Package: blimps-examples Description-md5: 18ddc9ff8aab78bc1efd53cccc24389d Description-en: blocks database improved searcher (example data) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains example data. Package: blimps-utils Description-md5: 1afe4567b883b39e7050a4f604a91e17 Description-en: blocks database improved searcher BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains the binaries. Package: fasta3 Description-md5: 0c5f0c74fdf5df990b61c52bee98824e Description-en: tools for searching collections of biological sequences The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. . * Protein - Protein-protein FASTA - Protein-protein Smith-Waterman (ssearch) - Global Protein-protein (Needleman-Wunsch) (ggsearch) - Global/Local protein-protein (glsearch) - Protein-protein with unordered peptides (fasts) - Protein-protein with mixed peptide sequences (fastf) . * Nucleotide - Nucleotide-Nucleotide (DNA/RNA fasta) - Ordered Nucleotides vs Nucleotide (fastm) - Un-ordered Nucleotides vs Nucleotide (fasts) . * Translated - Translated DNA (with frameshifts, e.g. ESTs) vs Proteins (fastx/fasty) - Protein vs Translated DNA (with frameshifts) (tfastx/tfasty) - Peptides vs Translated DNA (tfasts) . * Statistical Significance - Protein vs Protein shuffle (prss) - DNA vs DNA shuffle (prss) - Translated DNA vs Protein shuffle (prfx) . * Local Duplications - Local Protein alignments (lalign) - Plot Protein alignment "dot-plot" (plalign) - Local DNA alignments (lalign) - Plot DNA alignment "dot-plot" (plalign) . This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/. Package: fasta3-doc Description-md5: d8363a90c1f3049dede1153f13813e53 Description-en: user guide for FASTA tools The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. . The use of the package's many binaries and the equally representated conceptual approaches towards sequence analyses are summarised in this PDF. Package: firmware-qcom-dragonboard845c Description-md5: 3507088ed94312d44b4d5f5207d7374f Description-en: Binary firmware for various Qualcomm drivers used on Dragonboard 845c This package contains the binary firmware for GPU, USB, Venus, DSP hardware coprocessors found on SDM845, which is the main SoC on the Dragonboard 845c. Package: firmware-qcom-rb5 Description-md5: 0abf8cbedf59bff7af0b4696550319c7 Description-en: Binary firmware for various Qualcomm drivers used on Robotics RB5 This package contains the binary firmware for the SM8250, which is the main SoC on the Robotics RB5. Package: gitaly-installer Description-md5: a0db51942a7c98ec821bffaf2b5a8789 Description-en: Git RPC service for handling all the git calls made by GitLab Gitaly makes the git data storage tier of large GitLab instances fast. This is achieved by moving git operations as close to the data as possible and Optimizing git services using caching. Gitaly is a core service of gitlab. This package installs Gitaly from pre-built binaries from Gitlab artifacts. Package: gitlab-common Description-md5: ccb3bd8dfffd14a6e75d53315368861a Description-en: git powered software platform to collaborate on code (common) gitlab provides web based interface to host source code and track issues. It allows anyone for fork a repository and send merge requests. Code review is possible using merge request workflow. Using groups and roles project access can be controlled. . This package includes configurations common to gitlab and gitaly. Package: libblimps3 Description-md5: a1ad50ab461eca726e0a4e957f1a2ffa Description-en: blocks database improved searcher library BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the shared library. Package: libblimps3-dev Description-md5: 4d04b155f279229d68533b0ec59a8e4f Description-en: blocks database improved searcher library (development) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the library development headers and the static library. Package: libparmetis-dev Description-md5: 839c770f477cb92f6af09275d807c484 Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Libs: Devel ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains files needed to develop programs using ParMetis. Package: libparmetis4.0 Description-md5: 17a6686f47a3b63f4328881bffab697b Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Shared Libs ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains the ParMetis shared libraries. Package: libstdgpu-cuda-dev Description-md5: e4dd50a6deda827edd854dc36f6898ac Description-en: Efficient STL-like Data Structures on the GPU (CUDA development headers) stdgpu is an open-source library providing several generic GPU data structures for fast and reliable data management. Multiple platforms such as CUDA, OpenMP, and HIP are supported allowing you to rapidly write highly complex agnostic and native algorithms that look like sequential CPU code but are executed in parallel on the GPU. . This package installs the development headers for the CUDA version. Package: libstdgpu-cuda0d Description-md5: 86f2a09d523e7b55fff456ecf5defbc3 Description-en: Efficient STL-like Data Structures on the GPU (CUDA backend) stdgpu is an open-source library providing several generic GPU data structures for fast and reliable data management. Multiple platforms such as CUDA, OpenMP, and HIP are supported allowing you to rapidly write highly complex agnostic and native algorithms that look like sequential CPU code but are executed in parallel on the GPU. . This package installs the shared library that runs on CUDA. Package: parmetis-doc Description-md5: 55cc39b179c0b5b2dedead6fc6a8c34f Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Lib - Docs ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains the documentation and example files. Package: parmetis-test Description-md5: b9b53f52a3b7e53d03b5260911e600a9 Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Tests ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains programs which test the ParMetis libraries using files in the parmetis-doc package's examples directory. Package: sift Description-md5: 7788bf12148938f8dc8e4675657ce605 Description-en: predicts if a substitution in a protein has a phenotypic effect SIFT is a sequence homology-based tool that sorts intolerant from tolerant amino acid substitutions and predicts whether an amino acid substitution in a protein will have a phenotypic effect. SIFT is based on the premise that protein evolution is correlated with protein function. Positions important for function should be conserved in an alignment of the protein family, whereas unimportant positions should appear diverse in an alignment.