tRNAscan-SE-2.0/0000755000543100007160000000000013210665317012636 5ustar pchanlowelabtRNAscan-SE-2.0/COPYING0000644000543100007160000000442013072631703013667 0ustar pchanlowelabtRNAscan-SE -- a program for finding transfer RNAs Copyright (C) 2017 Patricia P. Chan, Brian Lin, and Todd M. Lowe This set of programs is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program, in the file GNULICENSE; if not, check out the web site at https://www.gnu.org/licenses/gpl-3.0.en.html. This distribution includes source code originally derived from other sources. In particular, modified source code from the program trnascan 1.3 (Fichant & Burks, 1991) is included under the conditions of the following notice: Copyright, 1991, The Regents of the University of California. This software was produced by the Los Alamos National Laboratory, which is operated by the University of California for the United States Department of Energy under contract W-7405-ENG-36. The U. S. Government is licensed to use, reproduce, and distribute this software. Permission is granted to the public to copy and use this software without charge, provided that this Notice and any statement of authorship are reproduced on all copies. Neither the Government nor the University makes any warranty, express or implied, or assumes any liability or responsibility for the use of this software. Also, the complete COVE package (Covariance models of RNA sequence and structure, Eddy & Durbin, 1994) is included under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. Please see accompanying files from the COVE package for more information. References 1. Fichant, G.A. and Burks, C. (1991) "Identifying potential tRNA genes in genomic DNA sequences", J. Mol. Biol., 220, 659-671. 2. Eddy, S.R. and Durbin, R. (1994) "RNA sequence analysis using covariance models", Nucl. Acids Res., 22, 2079-2088. tRNAscan-SE-2.0/Demo/0000755000543100007160000000000013265405366013530 5ustar pchanlowelabtRNAscan-SE-2.0/Demo/Example1.fa0000644000543100007160000012020213100451013015463 0ustar pchanlowelab> CELF22B7 C.aenorhabditis elegans (Bristol N2) cosmid F22B7. GATCCTTGTAGATTTTGAATTTGAAGTTTTTTCTCATTCCAAAACTCTGT GATCTGAAATAAAATGTCTCAAAAAAATAGAAGAAAACATTGCTTTATAT TTATCAGTTATGGTTTTCAAAATTTTCTGACATACCGTTTTGCTTCTTTT TTTCTCATCTTCTTCAAATATCAATTGTGATAATCTGACTCCTAACAATC GAATTTCTTTTCCTTTTTCTTTTTCCAACAACTCCAGTGAGAACTTTTGA ATATCTTCAAGTGACTTCACCACATCAGAAGGTGTCAACGATCTTGTGAG AACATCGAATGAAGATAATTTTAATTTTAGAGTTACAGTTTTTCCTCCGA CAATTCCTGATTTACGAACATCTTCTTCAAGCATTCTACAGATTTCTTGA TGCTCTTCTAGGAGGATGTTGAAATCCGAAGTTGGAGAAAAAGTTCTCTC AACTGAAATGCTTTTTCTTCGTGGATCCGATTCAGATGGACGACCTGGCA GTCCGAGAGCCGTTCGAAGGAAAGATTCTTGTGAGAGAGGCGTGAAACAC AAAGGGTATAGGTTCTTCTTCAGATTCATATCACCAACAGTTTGAATATC CATTGCTTTCAGTTGAGCTTCGCATACACGACCAATTCCTCCAACCTAAA AAATTATCTAGGTAAAACTAGAAGGTTATGCTTTAATAGTCTCACCTTAC GAATCGGTAAATCCTTCAAAAACTCCATAATCGCGTTTTTATCATTTTCT AACACATATTGACCATTTGGTTTGTTCAAATCAGAACAAATCTTAGCGAG CATAAAGTTAGATGCGATTCCAGCAGAACATGTTAATCCCGTGAGTTGTT CAACTCGAAATCGAATTTCTCGAACAGCCTCCTCTCGTCCAGTTCCGAAC TCCACATGGTCGTAGTAGATTTTCCGCGATTTTTCGCATTTTGGACAGAT CGATTCTTCGATTTTCAAGTCTTCCAAAGTATTTTCATTCTCGTCGAAAC GGGGTAACCAACATGGACAATCTCCGCCGAATCTGTGACGCTTGAAGGTT TCTAGTAAGCAAATAGTTTTTTGTTAATAATCAAATCTAAATCACTAACT TTTTTCTGTATTACTTGCCACATAGTCTGTCAAATCTATAAATGCCTCAT CCAATGACATCATTCCAACATCCGAATCGTATTCCATGAAAATTTGTGAA AATTGGCGACTGACTTTAGTGTATTTAGGGTAATTTCCTGGAACAATCGT TAGACTCGGACAAAGTTTATTTGAGATGAAGCCAGGCATTCCAGCACGGA CTCCAAAACGGCGAGCCAAGTAGTTGGATGTGCTCTGAAAGAATAGATTT AAAGCTTTTCCGAAATCGAAAATTTACTTTTCAAATTGAGTTAGGTGCTT ACCAGCATTGCCGATGAGCCTACGGCCATAGGAACTGTTCTCAGTGCAGG ATTATCTCTCATTTCAACTGCGGCAAAATAAGCATCCATATCTATACAAA CACAGTCTCTTGATAAATCTCTAGATGATTCCAGTTTCATCTCAAGATTC TCCATCTGAAAATTGGAAATTTGCTCTAAGTAAATTTATTAGCTTTTAAA ATACATACCAGTATCTCAGATTTTTGTCTTTCTTCTCTGGTTGCTGTTTG CAAACGATTTTTGATTTCTAAAACTTTCTCTTCAATTCTTGATTGTTGTT TTTTGGAAAACGACGAGTAGGACGCTGATGTGTTTTCTTCGATGACTTTC GTGATTTTCTCCTTATCCAGTCCATTCATTCCAGCTTTATTATCGTTGAA AGTCAGCATTTTTCACGAAAAAGAGCCGGATTTTGAAATTCGCGGAGAAA CTCCACTGATTGTGAGTGTGCAAATGCGCGTAATGGTGTACTTACGTACA TCGGCAACACATTTGACGACATATCAGAAAGCGGCGCCAAATTAGAAGTT GAGTGCGCGAGAAAAAACTACGCGTTAACCGCCAATTTTCACTTCCCCAC AGATCTGTCTCGAGATTCTCGAGTCATTTTTCAAGTTTATTTGTTTGTCA GCGGTTGTTTTATTGAAGATTTGTAAAATTTATAACAAAATGTGCAATAG TCTATTAAACCTCGTGAGATATTTGAAGAAACTTTCCCCGTTTTAAATAT TTCGTGTATTCGTGGAGATCGCGGGAATGTTTTGCCTGTTTCCGTAAAAT TCCTCTATTTCTTTTATTTTTGCTTGCAATTTTCGATTCATTTCAGAAGT TTCCACATTCGCAAAACGAATGGACGTCTCTTATTACGATGGTCCCAAGG ATGAAGTCGCCGAAGCAATGCTGAAAAGCGCGGTGACGGCCATGAGATTG GGACAATACGAGGATGGAAAAGGACGCTTAGAGGAGATAATGGAGTTCGG AACCTCAAATTTTCAACTACTTGGTACAATCTACATGTATTACGGAAGAG TGTGCAGGCATTTGAACCATGATGCCAAGGCCTTGGAGTTTTTCGAACAT GAGTTGAACATGTTCAAGTAAGTGAATCACAAAAATGAGCTGGACATTCT ATAACCTTAATTTTTCAGATTGATCTTCAACTACCCAGAAGCATGTGATT CCACACGTCGCATCGTCGAGCAGGCACTCAAAATGGGAAAGTTCCCCAAG GCTCGACGGTTTGCTGAGGATCTCATTGATTACACCAGCAATAAGAAGAA CGGAGAGAAGTATATCGGTCAAGCTCGAATTTTGTTCGCTTCCGTGTGCC TCGAAGGATGTGAAAGAGACGTCGAGAGTAATCAAGATGAGAAGAAGAAG CTTTTGTCAATATGTGCTGAACAGATTGCAGCCGTGAAATTGTTCAACGA GAATAATACGGAAGGAGCTGTGTCTGAGACCAAAATCATGTTACTTGAGG CGAAATGCTTGTCACTAGACGAAAAATACGAGGAATCGCGTCGCAAGTAT CAAGAATGCATCGATTTTGCCATCAAAACAGACCAGTTTGAAGCAGTTCA CATCGCCTATTACGACAAGGCTCTATATGCTGAGACAGATCTTCTTTTCT TTATTATCAGAGATCTCAGGTAATTTTTAGTTTTAACGATTAATAAAAAT ATCAATTCTTTATTCACAGAAGTGCTCTCTTCTACGCCACGAAATTCGGA AAAGAGCGAGATGTAGTCAAATATAAGTCGAAGCTATCCGAAGAGATGCT GAGAAATGGCGAATTCCACGAAGCATATCTCTACGGATTGGAAGCGCTTG TATCGATTCGGAAGCTTGGATTGAACGAATACATTGGAGATGTGTTGCTT ACAATCGCAAAGTGCCTCATTGCACTTGGAAAAAGACGCCAAGCTGCTTA TTTTATCATCTTGGGGAGTGTTCTGACCATCAACCAAAACAGTTTCAAAC TGTTCTACGAGCAGATCGACGTGGCGATGAATCAAGAGAGAAGCGAAACG GCAACTGATCAAGATGTATGCCTCGCAATTGATTCGTCTCCTGATCCGAC ATCCTCGAATGACATGATTAATAAGTTCGTCGTCGAACTGGAGCACGCAA CAAATGTGGAAACCTGGGAAATGATTGTCAACGGAATCATTGACGACCAG AAGAAACCAGTGGCGATCGAAAAGAAAGAGAACGAGGAACCCGTAGACAT GATGGATCTCATTTTCAGTATGAGCTCACGTATGGATGATCAAAGAACTG AACTGCCTGCTGCCAGATTCATTCCGCGTAAGAAATGTTATAAATAAGCG TATAAGTATGCAAATTTATATTTTTCCAGCTCGTCCAGTGTCATCGGCAT CGAAAAAGACTACAAAGAGTCACAGAATCCTCCCTGGACTCCGTGCCAAT TGGACAAAAGTGCAGTCGATGAAGTTCGATGGTCACACAATGAATAGGAT CCTGAAGAGGTCGAAGAAAAGCAAATCGTCATTGGATTCTACAAATTCGA TGCAGGGCGATGATACTCGAAGCGATGATGTGACAATGACGTCCAAATAG GACCATTATTTTTTCTGTCAAATAATACAATCAAACTTTCTTTATTTATT TTTTTTTTACTTTCTTTCAGTAAATATTATTATCATTTTAGTGGTTCTTT TATTTTATTTGCTGGTCAGAAAAGCTGATTTTTTCAATTAGCGAAAATCC ATCAAGTCATATTTCTATAGACTCTTTACTACATACGTTGATGACTTTCG TGATTTTCTCCTTATCCGGTTCATCCATTCCAGCTTTATTATTGTTGAAA GTAAATAAGCATTGTTTCCCGAAAAAGAGCCGGATTTTGAAATTCGCGGA GAAAAAGTTGAAAATTGAAAAATCCAAACGATGCTCCGATGTTCCGTCCG AAATGTGTGTTTTACCGTGACGGTGTTTGCAGACAGCTTGAAAAAACATT TATTTTTTTATTTTAATTTTATTAATTTATTATTTATTTTAGAATGTTCT ATATTTTAAAATGTGAATTTGTTTCAGGGTACTCGGAATGTTTGTCTTAA ACCGTTCAAGCGGGCTCATTCATCGATCTGTACCTTTATTAGCTCAAGTA TCCACGCCTACGACTTCCACAACAAAATTAGGTTAATAATTCTCCATTTG GTGATAAACCAATTCTTTTCTGCTTTTTTAAAACATTATGTTACAGCTCA ACTTCACACAACGCATGCACTAAGCAAAGAAGATTATTATAAGACTTTGG GTGTCGACAAAAAATCTGATGCAAAAGCAATCAAAAAGGCTTATTTCCAG GTAATATAAGTTTTTATCGAATACTTTGTAAGTATAAATACGTTATTTCA GCTTGCCAAGAAATACCATCCAGATGTAAACAAAACAAAAGAAGCGCAGA CGAAATTTCAAGAGATTTCTGAAGCATATGAGGTATTTTCAACAAACAAT AGAGCAGGCTCGAATCAAAAATATTAAGGTACTTTCCGATGACACAAAAC GTCAAGAATATGATGCATACGGAAGCGGAGGTGGCCCAGCTGGTGGAAGA GGTGGTGCTGGAGGTTTCCACCACCATGGAAATGTTGATGTTAACGAAAT TTTCAGAAGAGCATTTGGTGGAGGGGGTGGAATGGTGAGTTCTCCTTATG AATTCTTCTGAATATTATATTAATTATATAATTTTTATTGTAATTAATAA AAACTACAGTTTTATTTATTTTTTCGCTGATTCCAGGGTGGCTTTAATTT TGATAATTTTGCCCAAAGTGCTTTCGGACATTCTGCTGCTCAGGAAATGG TTATGGATATTTCGTTCGAAGAAGCTGTCCGAGGAGCCACCAAAAATGTT TCTGTAAACGTAGTTGAAGATTGTCTGAAATGTCACGGAACTCAAGTTGA ACCAGGTCACAAAAAGACGTCGTGTCCGTATTGTAACGGAACTGGAGCAG TTTCTCAACGTCTTCAGGGTGGTTTCTTCTATCAAACAACTTGTAATCGA TGCAGAGGAAGTGGACATTATAATAAGGTAGAGTTATTGATTTTTCTTTT ATTGTAGCTTTTAATTTTTTCTTCAGAATCCTTGTCAAGAATGTGAAGGT GAAGGTCAAACCGTTCAACGACGTCAAGTATCATTCAATGTGCCAGCTGG AACTAATAATGGAGATAGTTTGAAGTTCCAAGTGGGGAAAAATCAATTAT TTGTTCGTTTCAACGTTGCACCATCTTTGAAATTCCGACGTGAGAAAGAT GATATTCACTGTGACGTAGATATTTCTCTGGCTCAAGCTGTTCTTGGTGG TACTGTAAAGGTTCCTGGAATTAATGGAGATACATATGTTCATATTCCGG CAGGAACTGGCAGTCACACTAAAATGAGGTAATAAATCTCCAAAAATTGG AACTTAAATATTCATTAAACAATTTTCAGATTAACAGGAAAAGGAGTAAA ACGATTGCATTCTTACGGAAATGGAGATCAATATATGCATATTAAAGTAA CGGTTCCGAAATATTTGACAGCCGAACAGAAACAAATTATGTTGGCTTGG GCTGCGACGGAACAGCTGAAAGATGGAACCATCAAAGGATTGGAGAAAAA TCAGAAAACCGAGGAGAAGGAGACGAAGAAAAATGAGGAAAAGAAGTCTG AAGGTGAAAAAATATGATTTCAATTTGAAACAAAGGTTTTATCAAAAAGT TGTCTTTAAAAAATCGAGAAATTACCAAAAAAAATTCATTAATTTTTTTT TTTTAAACCGACATTATTGGTTGTAAAGATTCAAAAAGTTTGTAAAATTT TAAAGTTGTTTGAAAAATACCTGAAAGTCTTGTTTTTTTTTTTGCATTCT GATGCACTTGTAATCTCAATTTTTCCCCAAAACTGATTTTTGATTCTTTT CAATCCAAAATTACTAATTTATAGGTGCATCAGAATCACAAAAACGGAGA AGTGAGCCAGTAGCTGAGAATGCAGAAACTATTGACGAAAATCAAGAAAA CGAGGGATTTTTCGAAAAAATTAAACGAAAAATTTTCGGGTAAATATATA AATTTCTAAACAAAAATTAAATATTTTTGTTTCATTTGTATTAATTGAAA TTTTCCAGATAAGTCCGAGGAGAAGTCCGAGTCAAAAGAAGAGCCAAAAA ACGAAGAATCTAGTGAAACCCCCGAGAAAAAAGCTGCAGAATCCTAATAT TTGTCGCAATTTATCGATTACTGTCCCAATCTTTCCAGTTTTGTTCCCTT GAAATTTGTTTTGTCTCATTTGTAGTTCTATTAGAGTGATTATAGTGTCT TTTTTGTTACACTTGTTTTTTTTTTCTATTTTCAATTAAACCGAAACAAA TTTATCAAATTTTATTCAGAAAGAGATAACACAACTAGCAATGATATGAA GAGTTTTATGGATGAAACTGGATTTTTTTAGAAAATGGTCTGTAACTTGG CTGAACATGAAAATATCAAAAACCTCAAAATTGATAAAATGTGGTAAAAT GTTTTTCAGTTTTACTACACAACAAAGATTTTTTTATGAAATTAGATGGA TGTTGAGTTATGACTGGTAGAACAGAAAAGTTTTCAAAAATTTTTGTGGA TTTTGGTAAAATGGCTTTGACTCAATGTAACGCAACGAATAATTGGTATT TAAAAATGACAAAGATTTTAAAAGAAAGAAAAAACATTTCTGATCATTAT GTCAGTTGAACATTTGTTTCCTAGGCATTCATGTTTCAAGATACGCCAGT TTGAAGATACGCAGTTTAGTGAGTTTAGGAAGTTATATTCTCATTACAAG CACAGGTACATGAGAAAACAGCAGTCAAAGAAGGGCGGTATTTTTTAATT TGGAATTATATTTTGCTCCTTATAATATTGGGAACACATCTGTGCTGCTA AATTATTGTTTTGTTAATTTAAACCGAAACAAATTAATCAAAATTTATTG TAAAATAAAAATACAACTAGCAAAATATTTTATAGGACAAAATATGAAAA ACGGAATGTCGTGTGAAGATGGAATTGAAAAGATATGAAATCATTGTGAT CTGTTCAGGCAAACTTTATAAAAAGCAAGGTTTTCGGGATAGTTTGAAAG AGCAGATCACCTGGATGTGAAAATACGGTGACATTTTTTTGGAAAAGGGA AAGAAAATGAAAAAAAATCGATAATTTATAGAAATTTTAGCCCGTTTTTA ATTAGGGAAAGGGCGGTGAGTTAAGGATGTGAAATAATTGAAATTTCAAA ATGGAAAAGTGGTTTTTTTTGCACAGAATTTTTCATTTTTCATCTTGAAG GTTATATTAAACACGCGATGACTGTATTTAGAACCCATTAAAATAATGGA GAAAAATGTCTCAAAACTGAAATACTGATTTGAGAAAACCATTTTCCCTA TTTGAAAACTAAAAAAGATGACAAAATATAAAAATGGAAAATCTATTTGA ATGCACGATTGAGAGAATATCTTGAATGACAAAATCTACAACTTTGCATA TCAATTGCAGACGATGACGTGGAAATGGTAGCAGCATCGGCAGTTTGATC AATATATCGAATACATCGGATATCAGTTGGTATGAATGGTATGATGTGTT TGGAAACATAGAGATTCTCCACTATAAAAGCTTCTCGGGACATGTTACGA GCTCGCTTTTGCATTAAATTTGCGTAGAGTTCTGATACAAGGACTACCTG GAAATATTTCAATTTTCCGTTGATCAACATAAAAAAGCAAAAAAAAATGC TTTTCAAAAAAGGCAAAAGTTTTTTAAAAGTTTCAACTATATGCATATTT TTGACCACAAAACCAAAACAAAACAAACTCAATAATATAAGTAAAGAAAA CATTATGGAAATCATTTTCTCGCAAGGTCTTGTAAAACTAAATCGCACTT GAAACTGACTATTTATATATATGAGAAAAATGAAGGAGTCCTCCAAAAAT GATGCAACTCAAAAACGAAACATCAAAACGTATTTTTCAACATTTCGCAT TTCGCATTAGAGACATTTCGCATAGAACGGATTTATGTGGAAATTTATGG ACGTTTTCGTCCTTTTTAGATACATGAGCACATGTTCTCCTGTTTTATTT AGAGAGATGACTTGCTTTCAAAATTAAAAAAAAAAACTGCTTATACATAC CTTTCCTCCTACAACCGCCAATGCAGATCTAGCGTCTTGAATTTTTCTTC CGAAATAATGAATCTTTCGAATATACTGTACTCCTACCAAATCAATGCAC ATTGTAGTTATTGCAAGACCTAAAAATATTTTGAATTTTTGTTTTTTTTT CATTGAAAATTTACCTAAAATGATATAGAGCAATATGATATACATGTATC CGTCCCTTCTGGGCATCAAGTCGCCAAACCCGACCTAAAAATATTAATTT CAAAGAGTTCAACAAACTGGAACAAATTACAGTAGTCATTGTAATGAAGG ACCAGTAGAATGAAGTGAAGAAAGACCACGGCTCTAATTTTGACATTAGG ACACCGCCAAACGCTGTATATACTATCAGAATAGCTAATACCAGGAATGC AGGAATTCTGGAAAGACAAAAATTGAGATGAGTGAATTAAGTTTTGAAAG GTAATTTTCAAAATCCATTAAAAATGTATTAAAAATATTTTACAGTTTTC CAACGACCAAAAAATCTGTCGAACATATACAAAAAACCAAAGCCAGCTTA CAATGGAACCCCTAGTTTTTGTGATTGATCGATTGTTTCATAAATGTGTT TTATAACATTACGAACAAAAAACGCTTCTTGACTGGCAAAAACGTTTACC TTTTCTCCTCGATATTCATATCATGCCCCATTCCATGACTGTGACAGTGC TCACAAACGTGCTCTCTCCGTTCTTTTCGATGTCGTGACAATATGAGATA TTTTAATTTCAAATAGTTTCCATACAACCAAACAAGATGTTCAGATAGGA ATTTACCTGAAAATTATTAAAATTATAATACATTTTCTACATTTTCCCTT TAAAAACAAATTTTAGATGCGATTAGCTGATCGCAGTAGCTATCAGATGT AACTGATGTTTTTTTAAAAACTTCACGTACTACAGATTTTCTAGTAAAAG CATATAAGTGCCTGCCCACTTACCCAAGTCAGCGATGGTAACCAGTGTTA GAGGTATTCCAAGCAAGGAGAACAATATACACCATATCCGTCCAATGTTT GTCACTGGAACTGGATTACCGTATCCGATGGTAGTGACGACGGTTACGGC AAAGAAAATGGACGATGAAAATGTCCATGTCTCCGTTGCTGCGTTCTTTT TTACCTGAAAATAAATTAAATTATTTTTGAGGTATTTTGAGGTAGTATTA TTGTATTAAAAGTTTGAATAATTTTGGTTGAATTTGGAATAGGTTGAAAT CAAACTTTTCAAGTAAAAAACAAAGTTTCAATAGAAACAGTTTGAGAGAA ATGATAAATAGCTGACCGGAAATGAGTACGAAAATCTACTTTTTAAACTT TGAGTATGCTCTGAAATATTTTCCTGTTATTTCCTTTTTCCATATTCTGG CTTTCAATTATCTTTAAAAAATTTTAAAGACACATCTTGGTTAAGTGTTT GGTGAAACTATAAATCTAAAACTATTTTTAAAGGAAAATCCTTGTCCCTT TGGATTAAAAAGAACAAGAATAATTTTGAAATGTTTAATTACAGACACAG ACAATTGCTCAGTTAGCGCATAAAAAAATAAGCAGACAATGAACCAACAG AACAAAAAACTTGAAAGGGTCTCTCTATCTGACAAGTTAGAGTTTTGTCA TCTCCCGCGGGAACAGCTGAGCTTTCTCCACTTGTTTTTGTCTAATCTCT CCACATTTTTCATGATCTATTGTTGTTTCTATCTTTTGATAGTCACAAGG GACCTCTTGTGTTTTCCGTTTCTATTTCACACCGCCAAACAGACTCAAAG AATGGAAGGTTTTGTGGAAAAATAGGAAAAAGATGAATTGGTGAGGATTA TCAAGGATGGGGGAAAAGAGGTCGATAAGGAAATAGTTGGGTTAGAGAAG AACAAATAATAGTCCGGGTAGTTTGGATGGTTCAGATGTTACTTCTATAT TGATAAATTATAAGTTGTGTCGATGCAAAATGTTAATTTAAATAGCCGAT CGTAGTTTGAAGCAATCAGTTTACTGGTCAATTTCCGGCACATTTCGGCC AATTTTTGCCAAAATATTATATAAGTTTAGTTAGAAAGTTTTCAAAGCTG GAAATAAATTCGGCAAGACTTGGCCTAGATTTCCAAGTTTAGCTAAGCTT TGATTAAACTTCTGTCAATTTTTCATGAAAACTGTTCGTATTTTTTTATA GGGTCGAAATCGGGATGCCTGGAGTTGTGCCCGGATTGAGAAAAAAATTT GCAAATAGCCATCTCAATTACTCAATTACAAATTGCTTGCAATACATTTT CCGTACCTTCTGGTCGTCACATGCAATCTTTACAACAAAAAGTCCTGTCA AACTCACCTCGTTACTCGTCAAGAAATACTTCTCAAATGCGACAAACAGC TGATCGGACATATTGTGCATGTGCCGTTCGGCTAGTGACTCCCATTCGTA TCGTTCTGCAGACAATTGTGTTCAGGAAATTTTGTGGATTTCCATTTTTT GCCAGTTTGGTCGAATTATGTGTTGTAGGTATTGTCAAACAAGTTTCGTA AATTTGGCAATGTGCCAAAACTTTCAAAAAAAAAAAACAACGCTTTTAAA GTGTTTTAAAATACTTGGTCAATCTGAATTAATATAATTGCATGTAAATC CCCACTACTGATATTAAAAAGTTATGCCAATCTAACTTACTTGTCTCATT TCCAGCAGCCAAACGAATTAAGTCGTCAACAAACTCATTTTGACGAGTGT AGATCAGTTTAAGCTGAAAACTATTATTATTTTGAAAATTTCATATAATA TTTCGAAATATTCATAGAAAGAAAACAATTGTGTCCACAAAAATGCTGTT GTAAATATATAATTAGGTGCACTCATGTGCTGCCAGGTTGTTCTTTGTTG AAAAATTCGATTTCAGGATGCCATAAAGTAAATGGGAAAATATAATGGAA TCTAACGCGACATTGTTTAAAATACTTTGGCCGCTTGTGACGCCACACTG TTAAGTTTTAAAAATATATAAATTGATCCAAAAAAATTGAAACTAACTAT AAGCTTGACGAATAAAATCTAAGAGCCTAATATAAAAAAGAAGCTTTTTC TCATGCTAGGTACTAAAAAAGGCGCCCGAAAAGCACCTGGCCACCGCAGC CTTTTTTCCAGAAAATCGGAAGTCGTTCGCAAAGAAAATGGAAATGCTTG AGCCAACTGAGCCCATCTGCCACGTCAATGAAATAGGCAGATGGCTGAAT CGAACGGAAAAGAAGAAGGATGTGACGAGTGAATGAATGGCTTTTTGCGT TGAAAAAGTACCACTTTTGGTAGAATAAGATGGGCGAGTGGGAGTGAAGG AGTAGAAATAATAGAAATTGAAAATTGGAAACTTTTTCATAATTTTAACT AGATTAATTTTAGATGTCAGAGATAAATCAAAATGTGCTTCAAAATAAAA TAGTCTGAAATAGTCTTAATCCTTTTTATGCAAAATAAAAATTCGAACTT CCCCGAAATTCAAGTGGCATAATTGTTGCAATTTACACAGTAGTTTTGTG ATTTTTGCGCCAAAAGACAAATTATTATCAAGTGTGAAAAAAGTGTGCGC CTTTGAAGAGTACTGTAGTTCTAAACTCTTGTTGCTGCAGGGTTTTTCAA AGTTTTTGTCATTTTTTTAATGTTTATCTTTATATTTTTAATTCATACAT GTATTTTAAAAATATATTTTTAACAAAAACTGTGAAAAATCTAAATAGAT TTCGCAGCAATGAGAGTTTGCAGTTACAGTTATTATATATCTTTAAAGGC ACACACCTTTTTGAAATTAACAAACAATATCGAGTCGAGACCGCGTACCG TATTAATATCGCAAAACTTAGAGTTTTATTTGTTTTTATCTTGATGAAAG GCTTTTCAGGAGAACGTTTTTTTTTCAAGAAGAATTATCACCTCTCTCAC GAATTATCAACTCGTTCTCATTTTATTTCATTTTTAAGTGTACATACACA TCGCTGTTAGTTACCATCGCACGGATGGCCGAGTGGTCTAAGGCGCCAGA CTCAAGCGAAATGCTTGCCTCATGCTCGAGGTCGACTGGGTGTTCTGGTA CTCGTATGGGTGCGTGGGTTCGAATCCCACTTCGTGCAGAATTTTTTATG TTTTCAACCTTGACCAAAAGTCATATTCATCCAATTCGGTACCCTATTTC TACGTTATCTTGTTCCTCAAACGATGGCCTTATGTTTTGATCTTCAACAC TGCATAAGGAAATGTATACCAAAGACGAAGGTCGTTTTGATTTTTCAGTA ACTGGCAGCAATGATCCTTAAATCAGACTCCCACGCCCCTTCCGTTGAAA ATAGGGCTTCGATCGCCAAACTAATCTTATAAACACTAGAAAAGTTTTTG TTAAAAATCCGTATAAAAAGGGAATAATGTGATGAAAAAAGGCATCAAAT TTCAAATTTGAACATTTCAAGCTTAACTCGAACTTCAGCTTTCTCGCGAA AAAATGAGTCAAATCTTCCAAATTCTTGTGATCTTCGCCATTTTGTCAGC ATTGCAAGTGAATGGGTAGGTGAAGTACAGTACTTTATGGCATCAAATGA AATATACTCAGATTCCTCTTTCCAACTTATTCGTCAGGATATGACTACGA TTGTTATGGATACGGTAACAATGGTTACGGTAATGGTGGATACGGCTATG GAAATGGTGGCGGATACTATGGAGGATACAATGGATACTAAATAAAATAA ATGAATACTTTTTGACGGATTTTTCATTGAAAATTTATTTAATAAATGTT AAGCATTCATAAGTCTTGATGTAGCCTACCCTGAAGTATGATTTCGGACG GAATTATTAGGTGTAGGTCGTTTCCTACGTTTGCCTTATATGCAGGCAGG CACGCCTTCGCGGAGATCAGGGGTGTATTTTTGCTATCGGGCAATCAAAT GAAATATAGATTTGAAAAATTTTGTATTTTTTTTTTCTCTAAATGTTTTC AATTTTCAAGCTCAAAACATTTCAAGCCTAGAAGGAATTGTTTCAAATTT CTTCTCTCAAGTTGTGGAACTATTTCCAATATAATATATTTATTCCAAAT TACTCCCATGTGAACTATAGAACACGTATTGTCTCATCATTTCACTTTTA TAGTTTCTGTATTACAACACTTGAATGAATGCTTGGTGTAAACAATTTAT CAATGTGATAAACAATTCGATTTGACGAATTTTTCCGAATTCTCAGGATG ACCGAGTTTCGATGGTCAGTGGGAGTAAATGAATTGGGCAAATTGGTAAT GGAAATCTAGTTTTTATGGTGAGTCATGGCAAAGAAATCAAACATTTAAA AATTACAAGTGATAAACCATGAGTAAACTTAATCAGGCAAGCTGGCGTTA TCAAGTTGTTCAGTTGTTATAATAAAAATTACAAAAAAGATTTTCAAACA ATGTAGATTTTTTCCACTATCAATATTCGGTAACTCAAAATAAGTCTCCG TAGCATAGGACCTGGCAGCCTACACCTACATCTACATCTACATCTACACC TACCCACACTACAAGTACACCTAAATTAATGGTTCAAATGAGTCAAACTA ACCTGTTGTTCCTTCATCATTTGCTCGTGCGGCTGCTCAACACTATAAAA TATCAATGCTCCAATTACTGTATATGTACACGTTAGAAGTACAAGTGCAA CATGAGGTAGGACGAGTTTAGCAAACTGAAATAGGAAAATCACTTCAATT AAAATATTAGAATAAATACTAAGTTTTCAATTTTTAATTAATTAATTTCA ACGCGTTTGAATAATTTTGTTAAACTGTCGAGGAAAAAAATCTCATAGTC AGCGATCGAATTCTCACGAGTTCTGCCAATTTTTCCTTTTTTTTTAGATT CTTGTTTCCAATAGATTACCTTCCTGATTCCAGTCTCCTCTTCTTCTTCA TCTTCATCTTTACTTTCATCATCACTTTCATCGTCGATATCTTCATGGCC ACTCTGAAAAGTTGTATTAACTTTTTAAAAATTCAACCAAAAATAAAAAT AAACAACTGTGTGAATCAAATGAAAAACTTTTAGTTAAAATTCTATAACA TTGAAAATTGTATGAAACTAACAATAAAATCACACAGTTGACTATTTTCT TCAACGATCCATTTTTGCTAATGATTATAAAATGGTTAGCATAAAAATCC TTGTAAAATCAATAAAAACACACAAAATGGGTATATGGGAAAGGGGAATA TAAATGAAAAATTCCATGCTTCTAATTCCAAAACCTACTTAATAAACTCA CAATTATGGCTGAAATCAAGCTGATTTCTAGCTCAACTTCCTCATTTTCA ATGAAAATTTTTGCAGATTTTTTCGATTTTTTTATTTTCCGATTTGCGTA CGGACATTGATGAGGGTTATCTGGTGCTTCCTGTTTTACAAGAGTTTTAC AAAATAGGGAAAAGAGCAAAAGGCACAGTAAATCTTGTAAATTTAGAATT AATGAAAACAAACCTTATCACAACTGTGAATTAAATGACTATCTTCATAA TATTCAGCTCTTCCAAGTCCAGCTCTTGTTACTTCTTCACCGAATAAAGC TTCCTGAAAATAAAGGGAAAAGGGCATGCAAACGTTTTTGGAAAATCATG CAGTTTTTATTTTTATTTTCTAAGATGCATTTTATTGTCCACGGTGTTAA CACCTGGTAACTCTATCTATATATGTTTTTTTTTGAAATTTCTTATACCT TTAGCTCTGGTATACCTAATTTTTTTAAATATTAATTTTAAAAATTACAT GCATTACTAACAGAGATAATTATTCTGATCATTAAAATTTTGTGATTGCT CTGGTCCTTGTAGATAAAAATAGACAAAATAATTACCCTCCTCAAAACTC TCAACTCTTCATCTGTTGCCACGTCATCTCCGTAAATCAAGTTCTCAAAA ATTTTAATATTATGATCAATTGAGCCATTATTATTTTCATAATGATCTGG TTTTGTATAGCCACGTTTTTCATTTATAAAAAACTTTGCGATTCCAAAAA ATTCCATTATGAAGAATTTGGAGACCGTGCTGAAAACATCCATCAAAATT GAGTTAAAGAAAATCGAAATAATTAAATGAAATTGAGTTGAACGTAGGAT ATTTATTAATTTGTTTTAAAATCAGTTTAAAACCATTTTTGACGAATCTC AAAGCATTCAAAAATAAATAACAGAACATGGGAAAAATTGTATGAGTTTA TATAATACGTTTTCTCATGGTACTATTGATTGATCAGTGACAGAGTTTTC GATTCAAATTATTATGTCGCCTTGATCAATGAACTGAATTTTCTGAAATC GTATGTCATACTATTTACTAAAACTTCACAAGTCATAAAAATCAAAATAT CAAAAAAAAAGGATCTAGAGAACTTTCAATTTTTCTCCGTTTCAAAAGTG TTTGCCAAAAACCGAAATGGGAGTACATTTCTGAAGATTCCTTTTTTCTT TTTTGTTCAAAAAAAAGTTGTTAAGCTGGAAAAAAACTTTGGTTTGAAGA GATGGAAGTTGTCTTGGACACACTCACATTTTTGATGGACAGCCTATCAG CGAACCACTTTTGGATTCTTGGCGAGAAATTTTTGAATTTTCGAGTCAAT TTTCATGTCTAACTTGAGTATATTTATGACAGATATCACATTTTTCGAAA ACAACAAAACAGAAATAAAAATTTATGAAAAACAGATTTTTTTCCGGATT TCAAAATTGTAAACTAGAATTTAGATTTTTTCTATTAGTAATGCATACAA CTTTTTGGAAGGAAAAATACTAGAATTTTAGTAAAATTTGTTTTTTTTTA ATTTTCTAATTTCTACAATTTTCCAAAACCATGCAAGAATCCATTCAATG TCACCCAAAAAAGCAAAAGTCAAACAAGAAAAATCAATTAAAAAAAAGTT GAACCCTTTCAATTTATACACTCACCCTTCTCTGCCGTCTATGAAATCCT TCTGGAATTTCAGTGACTCGATCATCCATCTCATGCCGTTCAAGTTCTTC ATAGCTGTCATATTCAACTCCTACGTGGTGGTATGTTGAAGCTGCAACAG AAAAATTGAACATCAAGTTATTTCTTACAGCTTGAACCTTCAGCTCGCGC AGATTAAAAATTGGTAACTCCGTTGCAAAAAAGATGGAGTTGCGTTTTTG GGAAGTTTTCAAGATTTCTTACTAAGAAGTTTGGTACTTCGGAGTTATGT TGAGTATAATAGGGCAACTACCCAAGTTTATTCTACCTTTAACAATCCTA ACACTACTTACCGTAATCATCGTTATTACGATGAAGCAATGCTTCATGTG GATTATCACCTTCCTCTTCCATAAGTAGACTGCCACCATCACCACTAGAG TCAACTCGTTGATATCCACGAGATGATGAAGTCATCGCTGATGACGTGGC ATCTGAAAACTCAATTAATTGATGTTAAATTAATTGTATTATAATATTAA GTTCAACTTGAATTTTCTGAATGTATGGAAATTGAGCTTTTTTTTTAGCA AATCGCCATTTTGAAAACTCTCATTTTCAAATAGGGTCTAAAAGAGACAA AAAGGCAATACCTGTTCATAAGACACTGTTTGAAATTTTCAGTGAAAATT TTGGCAATATGCCAAAATTGCAAAAAACTACAAGTTATGATATAAGATGC TACGAGAAAAAATAAAAATGTAAATTTCAATCTACATCTTCTAAAAATTG TAAGAACATCATGCAAAACCTGCAACAAAACCTTGAAAAATTGAAAGAAA AAAGAAAGGTGAGGTAATCTGAGTCAAGGTGGAATGATGGAGGTTGGTGG GAAGAGGAAGGAAATTCAAAACCGCATAGACACCAAATATTGCAATGTTT GACAGAGGGCGACGAGGAGAGGAAAAAAACGAGATGAGCTCACGGGCGGA AAAAAGTTTTTTTGGAAGCGCTAAACTGATTAGTCAGTGGCGGTGGAGGA AGACCATTGGTATTGGATGGATAGCCCCCAATTTCGATGATTGACTTTTA CACATATACACACCAAGCTTTTGTTTAGAAAAAAGAAACAAAGAATTGTG TGTGTTGTAGGATGCCATTTTGAGGCGTGTGATTTGATAAATGAAGACTT CAACACCACTACTCCCTTGAGTCCAGATGAATTGAAGAACACGAAAAAAC GATTTATAAACAGATGGTTTCGTGTGGTTTCTGTGTTTTAAAAAGGCTGA CCAAAAAACTTCTGTTTTACAGGACGATGTGAGGGCTCTTCCAAGCTCGT TCTTTCCTCGCGCCTTACCGCAACTACCCATTAGTTTATCTGTGAGTTTA TTGAAATACAGTAACCTAGCTTCACCGTATTTCCTCTAATAGTATTTCAC CACACCACTTTACTTTAAAAGGTTATATCTTGGTGAACTTCAAAGATATG AAAAATTATAAAGTATGAATCGACTAAAAAACGAATATTCTTCCAACTTG AAATTTTTGAAAAGAACAAACGACAGCTGAGATATAAGTTGTTAAAGTTG AACAATGGGGTCCAACACTAGTAGAGGATCATATTACTCTTTGTAAAACT TTTTCGAATAGTGGAAAACTTAGTCGTAAATACACAAAATTAGACTCTAG TGACTCATAAATTTCGATCAAAATCTTTGAAATGTAGAATTTTTTGCCAG CAAGTTCTGTGAGCCACAACAATCAAAGAAGAAACCATGGAAAATGTTGA ATCGGTCAAAGGAAATCGCGGAAAAAGTAGTGGAAAAGGGGCAAAAAGTG AAGAAGAACTAGGCAAGATTAATGAGCCGCCTTTTTGGCTCTGAAGAGCC ATGTTTCCCTTGTGAGCATCATTTCTTCCGCGGCGCAAAGAATACGGAAG AATTGGAACAAACTTTTGATATTTGTTAAATATTTGCCCTTTTGGAAAAA ATCGTTGTGGTTGTGAAGGAAAAAACTACAGACAAAACATTTGTAAAAGT CGAAAATTGCTTGAAAATTTGCGAAATCGGTGAAACAATCAGAATTTCTG GCTTTGCCACCAATACCTAACGAGACCCTGCGTTTAGGGGCGGAGCATTT TATTAAGCCATGGAGCGCGATTACACCTTGGAGTGCTTTTCGAAAAAAAC CAAATTCAAATAATTTTTTAAAAAATCGAGAAATTATAAGTTTTAATTTT AACTTTGCTCTATTGATATGGGTTATCTAGAAGCTAGACTCTCTATAAAA AATCGAATAAAAACTAACGCGAATAAATCTTGAAAAGGTCGGAGTGCTCC CGAGAAAAGTTTTTGTGCTCTTTTCGTCGTAAGACTTCAAAAAAAGAGGC ATTTGGTTTGAAAAATGGCTCTGATCTCTTCGGTTTTTGCCCTCTTTTTG TTTAGAATATTTCATCTGGAACAATATTTGGAATCACGGAAAGAAATTTG CAGATGGTATTGTTTATAACTTTTATATATTTATGGAAAATCACTCTTTT GAATAGATTGTTCCACAAAACCTCACAAAATACTGAAAAAAGGAGAAATG GAAGACAGATATACAACGATATAACTTTTTTTGAATATAGGTTAATAAAA AATATTTGTGGGGGAATATTTGAAGATATTGGCATATTGAAAAAAAAAAA GAAGAAAGCGGCTACCTTTGAGTTTTATGGACAATGGAAATGGGAAAAGA GAAGGAATTTCATAGGTAGCTAGGAAAAGGTTCTAGTATATGGAACTACG TTTTGGGTATTATAGAGTTCAATAATATGAAAATCAATTTAATGATGGCA CAGTTTACACCCTATTCCCGGCAGTCGAACACAAACTTGTGCAAAAAATA GTATGTCATTTTTGTTCTAATTTTTCCGAGCAGTCATGTCCGAGTGGTTA AGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCC TGCTGACTGCGTGTACTTTTTATTTTCTTTCAATTCATAGAGTAATGCAA ATTCTATTAAAATCGGATACAGTATGTTATGAAAAAAAAGTGTTCTTCTC GAAAGTATTTGGCCTCGCTTCTTCAGGCTGCTGGTTCTAGAGCAGCAGTC AACTCAATTGTTTTCCACTTTTCCTTCTCATTTTCATTTTTTCATCGCTC CTTTTTCGTTCCTCACACTCCTCTAATTTTCCCTTTTTTACTCATTTTTG GAAAAAAAAAAGAAAAGGAGGTCTTATTTTGTAATCCTTCGGAAATTCGA AAGCTTGAAGAAAAACTAATAATGATGGAACTGTGTGGATTATTGAACGA GAAAAAGTTTTAAAGGTGCATACAGTAATTTGTGTGTGGTCTCGCCGCGA TCTATGATATACCAGCAAATACGGGATTATTACTTCAATATTGATGGAGA ATGTACATAGAGGGAACGGGGTTGGGTATCGCTGTCAGAAAAATACTGAA AAACCAAAAAAAAAATCCAAAAAAATTGTTTTTCATGATTATAACCTAAA CTTCATGAGTAAAAGTATCAAACTATCTCATTCTGAACAAGTTGAAAACC TCGGGACCACCACACCAAGAAGTGAGAAGCGCCCTCTTTTTGGCCATTGT TCCCGGGGGACAGTTTTGCGATTTGACATAAAAATCGCGAGAATAGTGTG TGAGATGAAGAAACGCAGAGTAGTAGAAGTAGGGGTATACGATGTTAGGC AAAGAAAAGGAGGGAGCTGGAGAAATGTGTCTGAAGAGCACTGACTGACA AAAATGTGCAAAATGTCGGAAGGAGGATGGGTTTTCATGTTTTCGGTGTA AAACTGACATAAGAAAAACATAAGAATATTGGTAGAAACTGGTAGGGGTT GTTAGGTTTTTCAATCTTTGAGAAATTGACGAAAAGTTGAAGTCTTCCGA ACTTTTTTGTGAAATTTAGGAGAAAAGATCAATTGAACGTCGGATTGAGA ATTTAAAACTAGATAAGTTTCAACTCAAGCGACGTTTGAAAAGATATGAA GTTTTAAATGAAAAATAAACGAACATTTTAAACAGGCAAACAATGCCTGC CTACGTGCTTACAAGAAAATTGAAACTAACAAGTAGGGCTACCAAATCAG ACGTACGATTTCACTGGATTCCGGACGATCCCGCCCCTTGTTTGTTTCCA ATTTACAAGAATATAAATGGTTAGGTTTTCTACGTGCCTACACGTCAACT TCATGACTGCCTGCCTACTTGCCTACTATATGGATACCGTGGCGAGGTCT TCTGGTTTTGCAAGCGTGCAGGCAAGCAATAGTTTTTTTTCTGTATAAAC ATTCTGGAAAATTTAACTGACCGTGGTTTATCAAATACTTCAATACTTCA AAAATACAGTTTAAAACATAATTTTTCTTTTTTTTCAACTTCTAAACTAA CCTGTTGTAGATTCATCAATAGCCGGAATATCTGATTCTATTGAAGGTTC GAACGGCTTAGACGGCGTAGAAGCTGGAACTTTTCAGTCTATTTTCAGTT TAAAAAACTTTAACTAACCTTTTTTGAAAAGTCGTAAATATTTTGCTCCA GTTCCACGTGGCATGATAGCTGGGGAGCTTTTTCAATTTTGTTTCCGATT TCAAAACAATTTTCAAAAAACACTGGTAAAGTGCACTTCCTGCTCAATAT CAGCCAGACAGAAACCAGAAGAACACAACTATTTCTGTCTATTTTTCTGA GAGAAAAAGAGCATTTTGAGCAATTTTGAGCCAGAGAGTCCCAAAACACA TTTTAATTTGAAGGATCCTTGCTCCTGAGCCCCCAGTTTTACGGGTCAAG TTAGGCATAATTGAATATGAGGAGGCGCAGAAAAAAAGAGAAGAAAATAA ATGAAAATTAATTTTATGGAGCTAATTTTTGAAAAAGAAGCAGGAACTAA TGTTTTAATTGTTCGTAGTTTGACTTGATGTGTGGTGAATAGTGTTTTAG TGTTTCACTGATCCTTCAAAGTAGATGTTGCACCATGGTCGAGGGCGCTT TTCAACCGCTTTGCTCTGTGGACCACAGTTATTTGAACTTTTCTAATTAT TTTTTTTTGTTTTTTAGTTTAAATCAAAATAGTGTCACTATTTTACTTTT TTTTATATGAACAAAACACTGGGAGTCGGGGTTCCAAATTTTATGAATTC ATATCACATCACAGCGATTTTTGTATTTTCAAAAAAAAACAAAATTTCAG ATCATTCTCCGGAGGTGGACAGTAAATGTTCTCAAATCAATAAAATTTAA TTCGATTTGTGATCCCAACCATCAATATGCATAAATATTTCCCAGATCAT TCGAAGAAATCATTCGAAAATGCGTCTTCTTATTCTCGCCCTCGCCTCTT TTTCCGTTCTTGTGAGCTCTTTCATCGTAAGTTCTTCTTTTGACTAAAAC TGTGTGAAAACCGTGGAAATACGTGTTTATCAGAGTTAGTGACGAAATTT TACCTTTTAATGGTATGATGCCTCGTAAATTTAATCAAACCTCTGTAGAA AACTCGTGTCATGTCAAGCGATTCGAAATCGATTTCTGAATGTGAAACGG AAACCCGTGTCACTTTGATGTCCAAACGCAGGAATAATTCCTTTGAAATT CAGATTCGTACTCATGATCTGCAAAATGCACCAAAAGCAAGAAGATTCCT GAAAAGTTTTGATCAACCTGAAGTAGTTGATCTTACTAAGGATCCCACTA CGTTCCAGGAGTTTACCAAATTCTATGTCCAACTTCTAATCGACGTAATC CAAAAAAAAGACACCAGAAGCCTTCATGGCACACAATAATTACCTGGATC TTGAAATGTTGTTCAATGAATGTAATGCTCAACATTACGAAAATTTAGGT TGGTTTCTGTAATAATATTTCAAAGTCTTTTTTAATAAAATTTTCAGGAA TGTTCTTCAAATGGCTTCAACAATTTGCTGCTCATCACGAAGATCCAAAG ATCACAATTAAAGATTTCAAGGGAGATAAAACATCAGGAGAAATGATTCT TCATGTTAATACCTTCACTTTATTCAAGTACAGACAAGAATTTGACATGA AAGTTAGCGCTTTGAATGTGGGTTATTGAATCAATATTTTGAAGACAAAA CTAATTTTTCAGGACAATGGACTTGGGTGGAAGATTTTGTTTGTTGACCG CAGTCTTGGGTGTAATTGATTCATTTTTTGAAACCGAATAAACTAATTTG TTAAATTATTAAATTAGGCAATGGGACAGTCTGGAAGTTGCTAGAATCTA CCGATATTTATTAGATATTTATTACTTACTTGCTACTATGTTTCACAAAA CAATATCAGAGAAAAAAAATCAAAACTGAGAAAAAACGAAACAACTTACC GAACAATAGTTAGCATTGCTTTGTACAAAAAAAACTGTGAGGCTATTGGA GCACTCCTCTGATTGATCCGGTCGTGAGTATTGATTTTGTTTGTCAATTT GTCTAGGACGCAATTGATTCATCGTTTGAAAAAAAAGCTCGTTCATTCAA AATCATTGATTATTTATTCCATGCAGAAAACTGTTTTATAATTCTCGATA AAAATGTTATATTTTAAACTGTAAATATTTATTTTTCCACATGATATGGT CTAACCGTGGGCGTAATATTTTCGGTTTAGAACGGCTGAATCGAATCTTT TGGACTGCAAAGACGGATTGGATTTTGAAACAAACTACGGTGTTTTTGTG ACAGTATTAGTCAACGAATGGTAATTAGGCATATGTTTTTGGAACAACTC ATAATTTCTTGTTGGAAAACAAAAGTGGCAAAGTATAATTATTTAAAACT CTGACAAATCTTTTGTCTTTTTTCTCTGGTACTCCTGTTTTTAACAGTGT CCTTATTATGCTCCTATTACTCTTGTGTTGTGCACGTTCTTTTGAAATCT ATATTGCAGAGCGGGAATGAATTTAAATAAGAATAATTCAACTTGGTCAT TCAAACAATAAAACGCCTACCATTAATATATCCAAAATAAGTTCTTTATT TTTGCAAGGTATTCAAATATATCAATAACTCGAGCCTGAAGAAATCCACC GCTAGAACATAAAATTAACGATAAATATTAAGGCAAAATGTTTGGGCCGA ACCGGGAATCGAACCCGGGACCTCTCGCACCCGAAGCGAGAATCATACCT CTAGACCATCCGGCCACTGCCCGGCTGGAGAAAAATGGGGGACTTTGAGC GTTACAACATTCTCGAGGCCCTCTCGAGTCGAGGGGGACCGAGACGGAGA GTGCTAGGAAAACCAAGCATATTTGGTTTTTGAGTATATAGTCGTACGAT TGAGAGGAAGCAAAGATAGATTTATAGCTTTTAATTTATTTTTTCTAGGA TTTTACGTAACATTAATTTCAATACTGATTTCGAGATTTGTCTTTTGATA GATTTACAACATGGTTATCATCCGGTATACTATTGTATAAAAGATGGTCC TAAATTCTATGAGATTATTTTATATTCTCTCTCAACGAGATGCTTCTTCC AAAAATTTCAATTCTTCTATATATTCTCGTCGTTCTTCAAGAAACAGCGG CTGTCCCGGTGCTCTTTTTCGCTCCGGAAGAGCTGTTCCGTTTGAGCGTG TCGTTGGACAACAGGTGAATTTTTTATTTCATTTTGAGTGAGCCATTGTA ACATTGGATCATAAGAGTCACGTGGAAAGTAGAACAATCTCAACCCACAA GTTAAAGCCTAATATTATTCCAATGCCTCTAGTAAGATTTTTATAAAAAT AGAAACCTCGCCATATTAGCCAGACACGAGATTTTTACGATTTCTTCGTC AAATATACGGTACCCAATCTCGACACGTCAATTTTTCAATAAATGCAAAA AGATGTGCGCCTTCAATGAGTACTGTAACTTCAAACTTTTGTTGCTGCCG AATCGACTTAGTTTTGTGAAAATATATGTATTCATGTTTTAAACAACTCA GAATTAACCCAAAAATTTTAACAAAAACTTTTTTTTAAGCTATGAAAAAT CAATTTGAATTCGGCAGCAACAAATGTTTTAAATTACAGTATTTTTTAAA AGCTTACGCCATTTTGCATTCATTGAACATTTGTCGTGTCGAGGCCGGGT ATATTTTTGACAGAAAAAAAACAAAATTTCAGGTTCGTTGTTTTTTGTTG TCAAAATTATAATGTGTTTTAATATCATATCAAAAAATTAGTCATTTGAT TTTCGATAGATCAAGCTTCAGTAGAGGTTTCTAATCATTCGGAAATATAC ACAAAATCTTGAATTTACACTTCCGATCAGTTGGAGAATATCATTGATCT ATCAATAATGTTAGATTTTGTAGTTGATATTTTCACAAAACTCTCAAAAC TTTTTAACATAAAAAGTTGGCATGGTGCGTCTTATAATTTTTGAATAACT TATTAAATTTCTAAAATTAATATAGAGATTGGCTCCCACATGTCGAGAAG TTGAATTATTTGTTCCTTGTCTATTCACTTCTAACCGTGATTGTGTTATC GACAAAATATGTGTTCATGAGAAACCACTTCCCCTTTCATCGATTTCTGT GTCAAGCCCGAGTCCAAATACAAAACGGGAAGGTCATCCCGAGTTCATGA GCCAAATTGCGCCGCCTAGAAGAAATGTGAGAGTTGAGCACAGCATTCAA CAATTTCTAATCAGCTTTCAGGACTTTTTGCGATTCGGAAGAGCCGGAAT GGCTTCTGGAGTTGGTGGAGGATCGGAAGGAGGACCTGATGATGTGAAGA ATTCGTATATTCGGGTCAATGGGGAGCCAGAGATTGTTTATCAATAAAAT AATATGGATTCGATGCGTCCGATTATTTTTTTTTACTTGATATTACATTC TCGAAACTATTGTAATGTGTGGGGAATCGTTATAAATAAAATATCTTCTT GTTAAACAATTATTCCATGAAATATGAAGTTATAAAGATATAATCCAGAT ACGAAACTTTGAGATTTTCGTCCGAAAAGTACGGTAGTGGGTCTCGACAC GACAAATGTTAGTTGTGCGCCTTTGAAGATTACTATCATTTAATTTTTTG ATTAAATCGTTTTATTCTAAATGCTTAGTATTTACACAAATATATTTCAA TCGGAATTTTCAAAGTATTTTCCTAGAGGAAACTACTTTGAAAATTCAAA AATTCAGCAACAACGAGAGTTTGTAATTACGGTAATCTTCAAAGGCGCAC ACCTACTCGTATTTAACAAAAATTTGTCGTGTCAAGACCGGGTTCCGCTC TTTTTTGCAGTAGTACAGAGAATATTCCGAAAGAAGTTTGAAATTAAATT AATTTATTATACCGACAAATCATCAAATGTGATGTATTTCAATGAGTACA ATTTTTCGAAAGAAAAACAGATTGAGGATAAAACTTGAGTGATGAGATAA CCGTAATATGGAGAATTATATCAGTGTCAAGAAGGCACATTGTTCAGTTT CATATTTACAGATGTTTGGGATTAAATGAAGATTCGGTATGCATCGACGA TCAGAACAATGAACGAGTGAGTTGAAAGACCTGGAATGTTTAAAATTAAT TTTTAAATTAAAATTCAATTTTCTGCCAACCTTTTGTTGAATGATATCAG TTCTTGGAGAAGACCATCTTTCAATTGCTTCAAATTCACGACGTCTTTTC ACCAGTTGTAAGAAGGCGGTCAACGACCCGTCAACGTTTGCGTAGTGTGT GCGGCAGGAGAAGAGACTGCAAAACAGAGATATTTCATGAAGACTCAAAT GAACAGCGGAAAATGTGCCTCGATAGCTCAGTTGGGAGAGCGTACGACTG AAGATCGTAAGGTCACCAGTTCGATCCTGGTTCGGGGCAATTCTTTTTCG ATTTTTTGAAACTTACCAAATTCCATCATACGAGAGTCCTTGGTGCAGAA TTTCGTGAACCAAATCAAATTCTGCTTCTTGCCGGTTTAGAAGATCTGGT GCCAAAATGATGTCGAATTTTTTTCCGCCAAGGAACTTCATTGCCTCTTC AATTGTACCACATGAAACCTTGGTCTTGATCATTGGAATATTATTTCTCT TAAGTGTTGGACGACAGTAAAGCTCCAAACTAGTCTTATCCATTGTGTGC ATTGCAATTTCTTCTGCTCCATTTTCGAAAGCATATACTGATGGGAGTCC AGTTACGAATCCGATTTCCAAAACAGATTTTCCATCGAAAAAGTCAGTTT CCATCTCAACATTGACAATATTATCAATAGTGTGGCAAATTGTGTTGACA CCTTCCCAGTCATCATGATGATCTGAAAATAAGACATTTTCAAAATTAAA TCAAAAATTAAAAAAGCAATGCCCCGAACCAGGATCGAACTGGTGACCTT ACGATCTTCAGTCGTACGCTCTCCCAACTGAGCTATCGAGGCATGCCGAA ACTGACGTTTCTGATCAAACAGGAAAAATTTGAAATTGAACCGTACCTTG GTGACTATTTTTTCTCATTATAGGCAATTCCTCTGCCACATGATTTTTCG GGTTTGAATTTCTGGTTGCCACGTACTTGATGCAACGGCCGGAATCCAAA CTGAGTTCACAGTTGACTGGAGCAACGGAAGCAATTGTTGGGATGGTAAG GACCATTTTTGTGTGATGAAAGGATATGAGAAGAACGCTGAAACCGAGCC GGAGCTATTATTTATTTTGAAAAAAATGACCCGAAACTAAAGAGACAGGT GGTTCTTTGTAGTTTTAGATAGTAAATAAAGTAATGGGTAGGGGGCAAAA ACAAAGAAGATAAGATACGCTTTAGGATGGAGTGAATCTTGATCGCATGA CGTGAATGGCAGAAAGTTGAAATTTTGAAAAAAAAGGAAGGAAAAAGTTT GTACCGAAAACTAGAGAATTTCCAAAGGGTTTGTTTGCATTCGACCATTC AGTTGCTTTTAAAGATTGTCCCGCAAAAGAGAGAGGGGCGGAGTGAATGG AAAAGTCACGAGGGCGGGTTGTGTGCAGAACAACGGCAGGAAAATCATAA ACACGAACATAGAGAGAGCTATTGTACTTGGAAGAATCAAAGAACGAACT GGAGTACTGGAATTGAGTGTGGAATTTGTATGTCTAGGTCAGGAAAGTGA GATCTAAAGCTAAAATAAAAGTGAAAGTCCATCTGAGTTGCAGGAGAATA ATTGAGATATTAGTCGAGCTTGTTCTTCAACTCTAAAAACTAATTGAATA AGTTTAAAGTAAAATGGAGCTCTTGAGAAAAAGCGAAAATGCCATGCTGC TTTAATACCACCCTAACCCCCTTCTATTGACTCCGCCTACTTTTTGTCTT CGCTAGATGAAGTAGATGAAGACGCCGGAAGCAATTGGAGATGTTAGACG TTTAGAGATGATAGAATCTATTCATCCAAGTGAGAGATCAAACAAGACAC TGAAGAAGAAAAGAAGATTGGCGGTAAAAGGGATGATCTTCAAAGAACAG AGAGCTCCGACACTTTTTGTTTTTCATCTCTTTTTTCACTGGTTGGTGGT CAGCGAAGAGGAATAAGAAGAAGAATGATGGCAAGAAAAAGAGAACAGCT GATCGATTCTTGTTCCTGAATAGATCAATGACGTACCATGAAAGAGTGTG AGTAGGTGGATAGTTGATGAAATTGATGGCAGAGGGTAGATCATTGTAGA AAAGAACGATCAACTTGAAGTAAACACAAAGTAATACGATAGAGATGATT CCTTAGCAAAAATAGTACCGGTGTCTACTGAACAGATCACGATTAATCTT TTTTATAGAGAACTTCTGTTGCTTAGAGACATTGTTTTTTAGAAGAAGTT GAAATATCAATTGAGATTCTCGTCAACTTCCTGATGAACACAAATAACTG GGCATTCACCAAAGGGCACCGCGATCAGTTCAGGGTTTCACCTAGACCGG GTTATTCAAAACTTCGAAAAATTCGGATAACCTGTAATTTGTCGATTTTC CGAACTGGCCGATAATCAACGTGCCGAACGATAATCACCGCTCATTCCTG ATTGAATACACGAGAAGCTGCAAATTAAAATACCTAAATTTCGAGGTTTC CAGAGTTTAGCCAACATCTAAGCTTAGACAAAAAAAAGCCTTTGCGAGTG TTTCTGGAATGGATTATTTTCTCTCAGCTTCAGTAAAAGATCCTTGGTTA CTATTTCTTGACCATCTCACGTTTAACTCCCAAAAATCATCGAACACAAC TAATTTCTCAACAAACCTATTTACTTTATTTCGCCTTGCTTTGTTATTTA TTTCACTAAAAAACGAACCTCAATGATTCACGTGTGATCGGTGACCAATG AGGCTGGCTGGCACGTGTACCAGGCGAAAATTTTCAGTGAGAAACACAGA GAACAGTGTATTCGGTAAATAAAATTAAACTTATTAAACTTTTTTTGCTG CTGATTCACGTGAATAATACACCAATGTTTGAGGTGAGCAGACTGATGAT ATCATTATTAATAGCAAGCTAATTACTAATACATTTTTAGACGTAATTCA ATCTAACTATTTCTATAGGAATATTTTTTCAACTTGCGAAATAGTTCCAT AATAATAAAACAACTAGAATTGGGCCATCAAGTAGTTACAAAAACTGTGA CTGCCATAAAAGGATTCAGGTAGGTAGGTGGCGCCATGCGTTTCAATTGA ATATTACTGAGTCAACTTCACATCTACAAAAATCACAGCATGATCATATC TAGTAAAGAAATCATAATAACAGCTGAGAGTGTTCAGATTTGCATAAATG ATGACATCAACATCTGATCTAGTCCAAACAATCACACTTTCATTTCCTTC ATTCTATGAATAATCTTCTCTTTAAAAAGAACCTGTTCTTCAGGACCTCC ATCTATATTGTCGTCTTCTCGTATGTTCCCAAATGTTATGATAATACTAT CTTCTATGACATCTTTTGGTGTGGGTGCATAATGACGTGGCAACCGTACT CAGTGTGCACCAAACTACGAAAACAACGAACAAACAAAAGTGAGTGTTAT CTTATTATCGCATAACGAATTCTTGTCGAATGGCATGATATGGGGACCTG GAAATTTAATTTGAAAATCTATCCATCAACTGAAAGAAAAAAATGAATCA GAGGGATTTGCGAAATTTCAAAATCAAAGAATGACCACGTGTCTTATTCA ATCAAATCAGTGGACGTTTCTCATAGAATGCTGCAGAGTAGTTACGAAGG AAATGTCTCAGTTTCTACCGCCAGCCTATCACAGGGATGGGTCTCACCAC AACGGGCTTCGCAAAAATGGGTCTTGCAAGGATGGGTCCCGCAACAATCG GTTCCGTAACAATAAGTCTCGTAAAAATGGGTCTCACAGCGAAGAACCGC TTAAATCGTGTAACACGAGGCCCTTGCTTCCACGCCAAAATGCGGAAAAG AAGTACTCGGCATTCAGAGGCAACTTCCTGCCATTTTATGGCAACTTCCT GCCAAACTTTTGCACATTCCTGCCAACATTTAGATGTTGCTGAGCGTTTT TTCCCACTTGCTGCCACTACGTGGCGACTTCCTGCCAACAACTCGGCAAC TTCCTGCCAGCAATTTGGCAACTTATTTTAGTGGCACTAAATAAGTTGCC AAAGTGTGGCAGGAAGTTGTCTCTGAATGCCGAGTTGGCAGGCACGTAGG CATTTAAGGGGGAAGGTGCCTGTCTGCCCTAGAAGACTTACTAAATAACT ATGAAAAGCATTAACATTTAGCGGCCACGCATAACACTATAAACCATTTC AGTTTGCTTACAGAGAATAATCAAGAAAAGCGGAACGTTATCTTGAAACT ATTGAACTATCTCCATGTGATGCGTTTTCTAGCACTTGACTTAATTTATC ATTCCGTTTCTGTCGCTTGTGATAAGAAAATTCTCAAATTTAATCGCCAA TTTAATTTTTTCGCAGATGGTAATCTGTTTGGACTTTCGTTCCAGTTCGG TTCACGTGAAACTCATGTTCAAGTTTTTATTTTTTAATTTTCAGATGAGA GCTACGTAATCATATTTTTGTTTTGTTTGCATTGGTATGGTTCTTGATCT ACTCGTATGGGGGTAAAAACGTGTGTCTAGTTGACATCAGTCGAGTGATA AGATGGAGATGAATAGTTTGGGAAGAAGATGGGGATCGGAAAAAAGCTCA AGAAATGGGTTTCAACTTTTTGAAGTTTTAATTTGGCAGCGTGAACATTT GCAAGGTATATGAAACTTCAAGAAGGAGAAGTGTAGGAAACAATGTGGAG ACGCTGTTATAAATTACGTTTTGAAAAAGTCTCCGGTTTTCCGTCAAGCA ACTTAGATATACATATGTATACTGCTTCACTTTGAAAAATCAATATGTCG CAAAATAAAATAAAAATAAGCCGCGAAGAAAAATAAAAATAAGCCGCGTA GGCCCGTAACCGTCTTTCTACCTTACTTATCGGAGTACGCCTAACTCGTG CCTACGTGCCTACTGCCAAAACAAATTTGGCACGAGACAGGCCTTTTCAC ATGTAGTATTTTCGTAACATGGATGCGTTATCCGATATATGGAAACTTTA GAGCTTTTATTCATTTAAAGTCAGTTTCTAATTCTGATCAGTATCGCCTT GTGCTGAACAACGAATTGTTAATTACATAACCACATCTCGTACTTCTGAT CTATTGATACTTCTTTTTTGTTTTGTTTCCATTTTTAAAAAGTTGCTCGT GTTTTTTGTACTTTTCCGTTTTCATAGTCTTTACCATCAGTTGTCATGGA AATTGTTTTCAAAGTTTGTGGATTTCAACCCGGAAGTCTATCAATTGTTT GCCACTCTGTTTTGTCAATGTATTTCTAGGTGCACCTTGCAGACATGTAC TCTGCGACCGAACCTGTCACCTGACAAAGTACCGTAACTTATTGTTTTCA CAAACACTTAAAGATGCCTGACCTGGAACGACGATCACTATCATCAAACG GTAATGATCGAAATTAGTTGAAAACATGATTTGACCGCAGATCGAACTGA TGGCGCCAGGGAAACACCGATAGAAATGTTTTTCAAAAGTCACATGTGCT AAAAATAACTTTTATTTGGTCTTTCTTTTTCCTTTTGTCACATCAACCAT TACATGGGCGGTCAATATCTGTCTTCTTATCTATTCAGTCTCACGTTAAA TACACGTGTCAATTTATGTAAAAGTCGGGCGGTCCTGACTTTTGATGATC ATGACATGTTTTCGATCAGTCGGAAACTGGGGGGAAAAAGAGAAAGACAG AGACGTGTTTACCACTATGCAGCTGCAATTCGGTTTTCTCTCGAACATTC CATGACGAGAAGAGACGCAGAACATTCAATCAAGAGGGGTCTTTGAAGAT CATCGTGTGCTTCTTTTATGTGTGTTTGTGTACGTGTTTGTGTGTTACTA AAAGTTGACTGAGGGACGGGAGACAGAGAGAGCTCAATGAGCAATGACGG ATGAGGGATTGGTTCTTAAAGTTGGTTATTTGTGGAACTTCAAGGTAGTT GTGATGTCTAAAGATTAAGGTTAAGAAACCAAATATTTTAAGTTTAAGAT AAATAAATAAAAACTTTTCAGGCATCGTCCGTAATTATCGGTAATTCGGA ATGATTTTAGATCTCAAGACCAGAAAAATTTTTGCGAAATATTCAAAATT TAATCGATAAAAATTTTAGGTGGAAAATTCAATTTCAATTTTTAAAAATT TTGGACCGGAAATTGAACTGCAAACTCTACGAAATGGCCGATTGCACCAT GTTGTTCGGACATTTTTAATTAAAAATTAGTATCAAAATTTTTTTCAAAT GAATTTAAAAAAATTACCTGATTTATTTTAAAATCCCATTAGTCTCAGCT AGCACGTTTTAAAAAGTACTCAGAACTGTTCTGAAAATTGTAAATTACTG GTAAACAAAATTCGACAATTCCATATTCTACTAGTGGCAACTTTCAAATC ATTTTCGAGCATTTTCTTAAATATTTCAGCTAAACAATGGGATTTTCGGA TTAATCAAATAATTTTCTATATTTTGACATTAATTTTCGATGAAAAATAT AGGAACTGCATGGTGCAGTGTGTCATTTTGCAGAATCGCCGAAAATAACT GTCGCACATTCTTGATTGAAACTTCATTTTTTTAATTGGCGCGAAATTCA AATTTTAATTTTTAAATATTTTAGGCGGAAACCTCAGACTTCAACTTTCG AACCATTTTGACTGAAAAATCATACTTTAATTTTCAGAAATTAATGAAAT CAGCATTATTGTAGATGTTTCGGCGCACACCGTTGGCCTGTGGGTTGGCC GGTAGGCATATAAGTGCCTATATGAGATGTTGATCTAGAAATTAAAAATA GACAAATTTCTAATCTAGGATATTTAACTGTTCAGTTTTGTTTGTCATAT TTTCTGCTTTCAAATGTTTTCAATTTCTTCTCCTCTTTTCATATTTTTCA TTTGCACTTCACATCAAAGTTTTATTGTCAGAGGACCTAGTAAATAAATA CATTTTTCATTCTCTCACATGCTGGTGTTTGATGTTCAGTTAAAAATGTT TTTGATTCTGCAGGAAAAAAAAGAAGAAAAAGTCAACATACAGTACCGGT TCATTTGATTTCATCGTTTTGGAATTACAGAAAAATACTGGAACTAAATA AATAAATTTAAAAACAAAATAGAAAAAAATCAGATTTTCAAAACAATATA ATTCCTATTAGCATTATAAACTATTTTAAATGGAGCTATTCGTGAATTGT CTTTTGAATTTGCAGCAAGTATCCAAAGATCACAAAGAGCTGTTCGACCA CTATTCTTTGGATCTTCTTCATCCCACATTCCACGATAAACACATTCTGG CCTGAAAAATAGGTTTTTTTTAAATGAACATTATTGTTCCGATTTTTATA CCTCCTCTCATCATTTGAACAATTCATAAGTTGGAAAACAAAATAATTGA CACCCATTTCTTTCATTATTTTGTGAACTTCCGCGATTGGTTTTTTACTA AACATAGAATACACTTTCAGAGTTCGTTCACTGAAACAAACAAGGTTTAA TACTTTCTAGAGAAAATTAACAAATTACCGTATTCCAACATGTTCATAAT GAGGGTGATTGACAATTGGCCTAAGAGTTGTGAGCTTCACATTTGCCATT ACTGGCATTGTTCCAGCGAACACAGCGTCTGAAAAAAGTTATTTTGAAGC TAATATGGAAGGCAGGCATGTCTTCAGATGTACGTGCCTGCCTACCACTT CGGTGGTAAGTTTGTATATTACCTTGTTTGGTGTTATGTTGAATCCAGTC AAACAACATTTCTTGATCAGGATTACTGTATTCTCCCTTGACATTCAACT GTTGACGGATATTTGGAATTCCTGAAGGATGAATAAATATTTAGTAATGC AGTGAAAGAATTCAAACCTCTATAAAATAATATTGCGATCACTCCAACAA GAGCAGAAACTCGTATAGTTTTTGATATTCGATCTCCCCCCAGCAGCTTG GAGTTTGCAAAAAGTGCAGCAACAATACATAAATGAGGTGTCATGAATAG TTTGAGACGCATTATCAGGAATGCCATGACAGTTGAACAGCAGAGTTGGA CCACATTATATAGAATCTGAAATGCCAAATTGTAACTTTTTAGTTTCAAA AGTTATAGTATTGAAGCTGAAAACAATAATCTTAAAATTTTAAAATTTTA AACAAAGCTGTATTTTATTTTTCTATTTTTTTAATAATATTTTTTAAATA ACCACCGATCTGCCAGATTCAAAATAGTTGTTTTAAAATTTGGAAATTAC CTCTCCATTTTCTCCAATTTCTTCACTATTCCTCCATAATAAATTCGTAT TTTTCACAAAGTTAAAAACGAAAGTGACAAGAGAAATGAGGGCAAGTGGA ATAAGAAGTGTTCCACACAATTTCTCAATTGTTGAATATTGAATAAAATC GAATTCAGCTGAACAAGTATACAGTCTCGTGTGAAAGTTGGCAAAACTTG TGAATTTTGAACGAAGAATATCAAAGATATGAGCCTGAAATCATTAATTG AAACACAATACAATAAAAACGATAACCAACATCATCTTCAATTCCAAGTC CTTTTGACAATCCAATTTTAAGCCCAAGAGTAATTGATGCAAAGATGATA GCCAGGAAAAGAACATAAGCTGGACGGAATTTAAGATTTGAGAGTAGAGG AGAGATGTATATGATCATCTGGAAGCTTTTTGAAATTTATTTTTATCTAG TTTTTTTTTTTTTGGATTTGAGTTTTTACCCGAAAATTGTATAAGAGACA TAAACTATTTTTAGTTTCTCTATTCAATAGAAAACTTACCCCCAATGCCA AAATACTTGGAAAATACAATGCAGTAATCATCATCTCGTTACCAAAAAGC AGCAAAAATCCAATGAGAAATGAAATGATATGAGAATGAATTACTGTTTT AGCAGTAGAGAATGGAATCAGATCCAGTGAAAACGCTAAGAATATTGAAC AAATTTGTGTGAAAAATGCAAATTGGGTGAATTGCCAGAATAAAAGAGCT GGAACTGCCATGGAAGTTAAAAGAAGAATCATTGAGTGACCAGACTTTTT ATATCTGGAAAAATGAGTTTTGAGAACATCATATGCCAAAGAAAATTAGC ATTGCTACGTCTCGCATTTTCGTCATTTTTTTTGTCATAACTTACTTGAT AACAAATGTCAAAATCGCAATATGCCCGATAATAAACGGAAAAGCAAAGC TCTCCCGAAGAGGAGGTGTCCATTGAACTCGAGTTGCTTCTCCGTGATTA AATGCAAAACATAATACTGACAAGAATCCTCCGAATATTGAATCACTGTA ATATATATATTTAGTTAAAAGTAATAATTTTTGTGTCGCTCACCTAACAA GAACACCCAAATAAAAAATGGATGAAGCTACAGTTCCAGCCACAATGAAA ACTCCGGTTATATAGAAATAATGAGGATTTCCAATTCCTTCACAACTTTC AACAGGCCGAAGTTCTCCTCGATTAACTTGCCAGCATAGTTCGATTTGCC AATTCGCTGATTTGGCAAATGCTCGGAATGGGCGGTACAGAAATGCAAGG ATTACCTAAAATAAGCTTGGAAGGATTTTAGGTATGGAGGAAATTGAGAG AAAATGTAATACAGGTGAATGTATTCTTGTGGTAATTAGAAGTTTGCCAA AGGTTTTTCCGACGGAAAACATTACAATGTGAAAACTTTGCGACTCACCT CTGGATATAAATTAAATCGATTTAGTGTGTTAATCTCGTGTCCATGTTCT GTCACAGTATCATGTGTTATCTCCTGAACACCCTCAAGAAATGATGGTGC ATTGATTATTGTTTTATAGTATGAATAGTAGAGACCCTGAAAAAACAAGA AATTTTGAATTTGTATTTTTAAAGAAAACTGTACCATTTCCGTTCGATAT GCCATCTCGCGTTCAAAGTCCGCCAAATGGGAGAAATGTTTGTCGTTTTC GAATAATGTGTAGACATGTTGGTAGTTGATGTATCCAACGAGGAGTCCTG AAAATAAAAAAAACTGTATTGAAATTCGTTTGAGCGTAAAATAATTTGTC GCAAGTTTGATAAAGATCCGAGAAGACTATTTCTGTAACTTGCATGATTG TCTGCCAACTAATTATTTTCTGAATTTTTCTGTCAGGTCACATGCCATAT CCGGGTGGAACAGGACCACTTTAGAGATTGATACGGCTCTAGTTTAATGA AGAGCAAAAAATCTGCAGGTAGGTCAGTAGGTAGGTGTTGTAAGCAGGCA GACATTTTGAACCCTACATGGACACCCCATTTCAAATAACTACTATTAAA ACATAGTTTTCTTAAAAAAGTATTTAATTTGTTTCCCCACCCAATTGCTC TTAATAATCCTCATTGGTTCTCCTAGTTTTACTCTTTTGTTCCCATTTCC CTTTTTTTGCAATTCAAAACACATCCAGTTTTGAGAGAGAGGTCTCTCTC TCTGTCCCTCTCTACCTCCCCCTCTCTCTGTAATTATCGACTTTGGGGAC GAAATGTCAGTTCATTTGTGGAAATAGTTTATGAATCGGAGAGACTTTAG ACACTTTGAACAAACCGTGTCGTCGTCAGTGACGAGACACAAACACAGGA AGTTTCGTTGAATATGTTGATGTTTCTGTTGACGTTTCGTTCCCTAGTTT TTAGAGATTGAGAGCATCTAAGGATTAAGGTTCAATGTTTCAAGATTTAA AGTTTTGAAACATAAGTAACAGAGTAAATGATATGATTTAGATAATTTTC TTATTTTTTAATCTGGCAAGCACGCTCAACTAACAAAACACGAATCCGAC AATCAGTCAAACATCTTAAACTTTTTAAAAAATTGTTCATTCTTTATAAG AGCGAATTTCAAATTTAAAAAAAACTTTAATTAAGCTTCAGGTCAAGCAA TTAGGCGTTATTATTAATTCTGGCAAGTTTCCGTTTTTCAGATATAATCA TTTCAATTTCGATTCTTTCTTCAAAGTGTCTGGAAAAAATGCTCTTTTTT AATAATTTCGCCGAATCTAATAGTTCTAAAATTTTATGTTGAAACGATCA ATTCTATAACAGTATATTCAAAAATAACCTCACTAAACTTGAATTTTTTC CAAAAAAAAGCATTCAAAGTGAGCAAATAGTTTTGGTAATACAGGTGGCT ACAAATTTTCTGTCAAAATGTTCAATACACAAAGTGTGAGCAAGAGCAGA ACCAGTTTTCAAACATATTGCTCTCAGTTCTCACTTTCATTTTTGTTTGT ATTAGAGGCTCATTGAGCAATAGCAACTTGAACTTTACTTACTGTTTGTA ATAGCTTAACTGTTCACATTTTTACTAAAACTTTGCAACCTATAGGTATA CCTAATAATTGGGTTTTTCAATTTTGTATGAGAAATCACATCCCGAAACT GAATGGAAACTTTCTGATTAAAATGGATATCACTTCAAACATAGTGTCTT TTAATATTGTCTAAGCCTGTATGACAGTGATAATTTCTAATAAAGAGGCG CAGAGAAATTAGATAATGACCGATAATGATGAGATGAATGAATGTAATGA TGTGGGAAAATAGATAATAGAATAAGAAGTGTGGGCATAATGATTTAGAT GATAGAAGCGTTCAGTCTAGGAATCATTTCAAGTCAATATCACTAATTAT CTCATTTATTTTTGTTCCTTTGATTTATTCGTTTTGGTAGGGCCGTTTCA TCTTAAAGCGTATATTCAAAACAATTAAAAAATCGTTTTTGAAGTCTTCC AAGTAAAAATAAATATCTGCTTTGTGCCTATATTGCGCACCTATCATTTA ATTTCTTAAATGGGGCGTAGCAATTTTGGACTTCTGCTTCAATATCTTCA AAATGATCCCAATAGACCGAATTTCATAATGTGACTCCTCGAAAATTTCT TATGAAGATACAACATTTTAACACTGTTTTCTTTCATAGTGTCCAACGCC TGCCTTTTTCCTACACTAGTTTTTTTTTCAATATCCTTGCAAGTGCACCT GCAAGAAAAGTTTAACAAAAGTTCTTAAACTTAAAAAAGTAGGTGGTAGG CAGGCACGTAGGTGCGCAGGTATGTAGCCAATAGATTCTCAAAATATAAT TATAAAAACTCTGCATTTCTTTTTATTCATCCTAAAAGCGCATTCTACTC AAAACCCAGTCACATGCTCTATTCACAAAAGTCAATTTTTTTTCATCTGC TCTCCGCATAAACTCTTGCTTCCAATTTCCAGATGCATTTAATGTCACGT GCGTTCACTTTTTTCCCTTCAAGCTTCCAGAACAAAAAAGTCTTGTGATG TTTCGCTCAGAAATTTGTTTGAATAGATGATAATTGGATTTCGGTTGAAT TATTTTTGCCATCGCATGTCCTTTCTTCAATTCTCAATTTCCAGTTTTCG TGTGATTCTCCAAAAGTTTCAAACATCATCCGAATTTTCTTGTTTTTCTA TTATGTCACTGATTTCCTATTTATTTTTCATATTTTTAAAGTTTTTTTTA AGGGAAAATGAAAACGCCTGCAATTTTATTACTCCTATTCTTATTTATGA TGAGTTTGGCACAAAGTGATGAGGAACAAAGTGGAAAGGAACCTCCCGAA AAAGATGATGTTCTAGTTATTCTGGTTGGTTTTTGCCAATGTTACCATGT CAGAAATGCATGCATGCCTACTTTCGGCACATCTTCGTTTTCTTTTCCCG TATTCTATGTTTTAATTTTCAGGCAGAAGACAATTCGACACTATTAAACA ATAACCAAACAATGTATGACCCTTCTTCCGAAGAAAAAGAAAGTGACAAA CCAAAATTCAATTTATTGGAGACATATTTACCACTTTTCATATTTGTACT CGATCTACCAACAGAGGATAGAGAAACTTTGAAAGCCTATGTAAAAGATA AAACTTATGAAAAACTGAAATATGTAATCGATTCAAAAGTTAAAATGAAT CGAAATGAGAAAAATGTCTTAGGAAGAATCAATGAATCCTTGGTACAATC AATCGATAATTTGGAACATTTTGATGAGATTACTGTAGATGTGGTGAATG GTTATCACGTAAGTTTGACATTTCAATGGAAAATCATCTCTCTTTAATCT TTAAAATGTTTTATTTTCAAAAAAAACCTTAATATGACAATACCAAATTT TCCTTCTATAACTAAATTTCTAGAATGCCTCCGTATACAACGCAATCCGT TCAGTTTGGTTGAAACAATTACGTCCATTTCTGCCGCTAATTGATCAAAT GGCCATTCAGCAGTATTTTGCACAAAGGTTTCAAACATCAAGCGTCTATC AAAAACTATGTTTATTTTCCAGAAAATCTTCTGAAACTGAGAAAATGTCA ATTTGGGCAAGATTATGGGAAAATCTGAGTGTTTGGATGTATGGAAAGAA AAAATTAAACGAATGTTATGCAATGGAGCCAAAATGTGTTCGACACGCAT TGGAATTGCTTAATTTTGAACAAAGGATTGATTTGGATTTAGCTGCTTAT GAGAACAAGTTTGACAGTGTTGATGGAATTATTAGGGAAAGAGTGAGTCA ATTTAGATATTTAAAAAATGTCAAAAGCCCCAAAACGAATTAATTTTCAG CTTGGCGAAAATCGGAAAAGCAGTGAACTCGACGAATGGTTGCACAGAAA TCGCCCACCAAAAGCGCTACAAGCTATTTTAGATGAGCGAAGTGACATTG AGGAGGAGTAAGATATTTATATTGAATAGATAAACGTTAGATTTTTAGAG CTCTTCAACGCCTTCGAGATAACGGAGTTCTGAGCTCACTCAAACATTAT TACAAAGCAGTTATAGAGTCAAGAAGTCATGAAGAGCAAGAGGTAACCAA TGTTTTAGATAGTTCTTGTCAATTTTCTTACGCATTTTTCGATATTCTGC TAATGGGTGCAAAGTTCTAAATTGTTTTTAATTGTAGCTTTCTATATTAA ACTTTCAGGACATTCGTCATTTCTTCGACATAATGAATGACACATTTGCT CGTTGCTTTGACCCACTACGAGGCCAGTATCATGATTTCTAGAAAAACCC TCTTTTTGACTTCTTCCTCCAT tRNAscan-SE-2.0/Demo/Example2-tRNAs.stats0000644000543100007160000000745113100451013017233 0ustar pchanlowelab tRNAscan-SE v.2.0rc1 (April 2017) scan results (on host pismo.soe.ucsc.edu) Started: Mon Apr 10 01:02:38 PDT 2017 ------------------------------------------------------------ Sequence file(s) to search: Example2.fa Search Mode: Eukaryotic Results written to: Example2-tRNAs.out Output format: Tabular Searching with: Infernal First Pass->Infernal Isotype-specific model scan: Yes Covariance model: /home/pchan/lib/tRNAscan-SE/models/TRNAinf-euk.cm /home/pchan/lib/tRNAscan-SE/models/TRNAinf-euk-SeC.cm Infernal first pass cutoff score: 10 Temporary directory: /tmp tRNA secondary structure predictions saved to: Example2-tRNAs.ss tRNA predictions saved to: Example2-tRNAs.bed Isotype specific predictions saved to: Example2-tRNAs.iso Search log saved in: Example2-tRNAs.log Search statistics saved in: Example2-tRNAs.stats Reporting HMM/2' structure score breakdown ------------------------------------------------------------ First-pass Stats: --------------- Sequences read: 6 Seqs w/at least 1 hit: 6 Bases read: 595 (x2 for both strands) Bases in tRNAs: 504 tRNAs predicted: 6 Av. tRNA length: 84 Script CPU time: 0.01 s Scan CPU time: 2.74 s Scan speed: 0.4 Kbp/sec First pass search(es) ended: Mon Apr 10 01:02:42 PDT 2017 Infernal Stats: ----------- Candidate tRNAs read: 6 Infernal-confirmed tRNAs: 6 Bases scanned by Infernal: 575 % seq scanned by Infernal: 48.3 % Script CPU time: 0.21 s Infernal CPU time: 16.21 s Scan speed: 35.5 bp/sec Infernal analysis of tRNAs ended: Mon Apr 10 01:03:10 PDT 2017 Overall scan speed: 62.1 bp/sec tRNAs decoding Standard 20 AA: 5 Selenocysteine tRNAs (TCA): 1 Possible suppressor tRNAs (CTA,TTA): 0 tRNAs with undetermined/unknown isotypes: 0 tRNAs with mismatch isotypes: 0 Predicted pseudogenes: 0 ------- Total tRNAs: 6 tRNAs with introns: 1 | Ser-CGA: 1 | Isotype / Anticodon Counts: Ala : 0 (0) AGC: GGC: CGC: TGC: Gly : 0 (0) ACC: GCC: CCC: TCC: Pro : 0 (0) AGG: GGG: CGG: TGG: Thr : 1 (1) AGT: GGT: CGT: TGT: 1 Val : 0 (0) AAC: GAC: CAC: TAC: Ser : 1 (1) AGA: GGA: CGA: 1 TGA: ACT: GCT: Arg : 1 (1) ACG: GCG: CCG: TCG: CCT: TCT: 1 Leu : 1 (2) AAG: 1 GAG: CAG: TAG: CAA: TAA: Phe : 0 (0) AAA: GAA: Asn : 0 (0) ATT: GTT: Lys : 1 (0) CTT: 1 TTT: Asp : 0 (0) ATC: GTC: Glu : 0 (0) CTC: TTC: His : 0 (0) ATG: GTG: Gln : 0 (0) CTG: TTG: Ile : 0 (0) AAT: GAT: TAT: Met : 0 (0) CAT: Tyr : 0 (0) ATA: GTA: Supres: 0 (0) CTA: TTA: Cys : 0 (0) ACA: GCA: Trp : 0 (0) CCA: SelCys: 2 (0) TCA: 2 tRNAscan-SE-2.0/Demo/Example2.fa0000644000543100007160000000122613100451013015470 0ustar pchanlowelab>MySeq1 GTTTCTGCGTGAGGCCCTATAGCTCAGGGGTtAGAGCACTGGTCTTGTAA ACCAGGGGtCGCGAGTTCAAATCTCGCTGGGGCCTTGCGAAACTACTTTC >MySeq2 AGAATGTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGA GGTTCTGGGTTCGAGTCCCGGCAGAGATGATCACCT >MySeq3 TTCAAATCGAAATGGCACTATGGCCGAGTGGTtAAGGCGAGAGACTCGAA tggaataaaaagttcggctATCTCTTGGGCTCTGCCCGCGCTGGTTCAAA TCCTGCTGGTGTCGTTTAATTTTTTTTAAATAAC >MySeq4 GCCAGGGAGAGATGGCCGAGCGGTCCAAGGCGCTGGTTTAAGGCAACCAG TAGCTTCGGGGGCGTGGGTTCGAATCCCACTCTCTTCA >MySeq5 TAGCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGCTTCAAACCTGTAGC TGTCTAGCGACAGAGTGGTTCAATTCCACCTTTCGGGCGAGATAA >MySeq6 TTAGCAGACACGGTGGCCGAGTGGTTTAAGGCATGAGACACTTGATCTCA AACGGTTCTAACCGAACGCAGGTTCGAATCCTGCCCGTGTCA tRNAscan-SE-2.0/Demo/Example1-tRNAs.out0000644000543100007160000000116313100451013016675 0ustar pchanlowelabSequence tRNA Bounds tRNA Anti Intron Bounds Inf HMM 2'Str Hit Isotype Isotype Name tRNA # Begin End Type Codon Begin End Score Score Score Origin CM Score Note -------- ------ ----- ------ ---- ----- ----- ---- ------ ----- ----- ------ ------- ------- ------ CELF22B7 1 12619 12738 Leu CAA 12657 12692 74.2 51.20 23.00 Inf Leu 119.9 CELF22B7 2 19480 19561 Ser AGA 0 0 81.6 47.50 34.10 Inf Ser 125.0 CELF22B7 3 26367 26439 Phe GAA 0 0 82.5 56.60 25.90 Inf Phe 112.1 CELF22B7 4 26992 26920 Phe GAA 0 0 82.5 56.60 25.90 Inf Phe 112.1 CELF22B7 5 23765 23694 Pro CGG 0 0 71.5 48.20 23.30 Inf Pro 113.0 tRNAscan-SE-2.0/Demo/Example1-tRNAs.ss0000644000543100007160000000402413100451013016512 0ustar pchanlowelabCELF22B7.trna1 (12619-12738) Length: 120 bp Type: Leu Anticodon: CAA at 35-37 (12653-12655) Score: 74.2 Possible intron: 39-74 (12657-12692) HMM Sc=51.20 Sec struct Sc=23.00 * | * | * | * | * | * | * | * | * | * | * | * Seq: GCACGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGcgaaatgcttgcctcatgctcgaggtcgactgggtgTTCTGGTACTCGTATGGGTGCGTGGGTTCGAATCCCACTTCGTGCA Str: >>>>>>>..>>>...........<<<.>>>>>...........................................<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. CELF22B7.trna2 (19480-19561) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (19513-19515) Score: 81.6 HMM Sc=47.50 Sec struct Sc=34.10 * | * | * | * | * | * | * | * | Seq: GCAGTCATGTCCGAGTGGTtAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCTGACTGCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. CELF22B7.trna3 (26367-26439) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (26400-26402) Score: 82.5 HMM Sc=56.60 Sec struct Sc=25.90 * | * | * | * | * | * | * | Seq: GCCTCGATAGCTCAGTTGGGAGAGCGTACGACTGAAGATCGTAAGGtCACCAGTTCGATCCTGGTTCGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CELF22B7.trna4 (26992-26920) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (26959-26957) Score: 82.5 HMM Sc=56.60 Sec struct Sc=25.90 * | * | * | * | * | * | * | Seq: GCCTCGATAGCTCAGTTGGGAGAGCGTACGACTGAAGATCGTAAGGtCACCAGTTCGATCCTGGTTCGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CELF22B7.trna5 (23765-23694) Length: 72 bp Type: Pro Anticodon: CGG at 33-35 (23733-23731) Score: 71.5 HMM Sc=48.20 Sec struct Sc=23.30 * | * | * | * | * | * | * | Seq: GGCCGGATGGTCTAGAGGTATGATTCTCGCTTCGGGTGCGAGAGGtCCCGGGTTCGATTCCCGGTTCGGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tRNAscan-SE-2.0/Demo/Example2-tRNAs.out0000644000543100007160000000122413100451013016674 0ustar pchanlowelabSequence tRNA Bounds tRNA Anti Intron Bounds Inf HMM 2'Str Hit Isotype Isotype Name tRNA # Begin End Type Codon Begin End Score Score Score Origin CM Score Note -------- ------ ----- ------ ---- ----- ----- ---- ------ ----- ----- ------ ------- ------- ------ MySeq1 1 13 85 Thr TGT 0 0 78.0 54.80 23.20 Inf Thr 93.1 MySeq2 1 6 79 Arg TCT 0 0 75.1 56.60 18.50 Inf Arg 89.3 MySeq3 1 14 114 Ser CGA 51 69 71.8 49.10 22.70 Inf Ser 118.3 MySeq4 1 6 88 Leu AAG 0 0 65.0 43.90 21.10 Inf Leu 92.2 MySeq5 1 3 89 SeC TCA 0 0 146.9 0.00 0.00 Inf SeC 146.9 MySeq6 1 7 92 Lys CTT 0 0 72.1 40.60 31.50 Inf Leu 75.7 ISM (-73.90) tRNAscan-SE-2.0/Demo/Example1-tRNAs.iso0000644000543100007160000000140413100451013016656 0ustar pchanlowelabtRNAscanID Anticodon_predicted_isotype Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro SeC Ser Thr Trp Tyr Val iMet CELF22B7.trna1 Leu 37.4 55.3 10.1 12.7 51.2 39.7 -8.4 45.3 58.7 58.5 119.9 27.1 8.8 5.0 16.6 -7.6 69.0 52.1 41.5 45.5 28.8 -999 CELF22B7.trna2 Ser 30.7 40.4 5.2 4.8 56.8 31.0 -0.1 28.9 45.0 36.2 72.1 5.5 0.4 -11.4 -999 -17.2 125.0 43.9 35.2 43.0 11.5 -999 CELF22B7.trna3 Phe 54.4 63.8 67.7 32.4 71.8 43.0 6.1 37.0 49.7 73.6 -999 71.1 85.0 112.1 43.3 -999 -999 84.2 71.9 81.3 60.8 -17.7 CELF22B7.trna4 Phe 54.4 63.8 67.7 32.4 71.8 43.0 6.1 37.0 49.7 73.6 -999 71.1 85.0 112.1 43.3 -999 -999 84.2 71.9 81.3 60.8 -17.7 CELF22B7.trna5 Pro 74.8 50.4 13.0 54.6 48.0 54.4 49.8 60.0 59.9 32.0 19.9 4.4 19.2 6.6 113.0 -999 -5.2 50.9 53.7 22.5 61.2 -999 tRNAscan-SE-2.0/Demo/Example2-tRNAs.iso0000644000543100007160000000157113100451013016664 0ustar pchanlowelabtRNAscanID Anticodon_predicted_isotype Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro SeC Ser Thr Trp Tyr Val iMet MySeq1.trna1 Thr 62.6 63.2 48.1 34.4 77.1 62.4 21.9 36.3 60.9 66.0 28.5 46.4 65.2 39.8 47.1 -999 32.5 93.1 59.9 58.6 61.3 -7.1 MySeq2.trna1 Arg 42.5 89.3 67.8 29.2 48.4 45.1 30.0 38.1 47.4 54.0 11.1 51.0 62.4 24.8 22.6 -999 26.2 65.8 61.6 44.4 49.2 25.7 MySeq3.trna1 Ser 24.2 45.4 8.9 0.1 58.6 43.5 8.7 31.9 47.1 43.5 74.6 7.8 0.3 -2.7 -11.5 -999 118.3 45.3 28.2 51.0 19.0 -999 MySeq4.trna1 Leu 40.8 32.4 -12.6 -5.6 34.6 23.7 -999 26.8 50.6 30.5 92.2 -11.2 3.2 -11.9 12.8 -999 67.7 44.5 37.5 29.8 17.6 -999 MySeq5.trna1 SeC -999 -999 5.4 -2.1 -3.4 -10.0 -999 -2.0 -2.5 -5.8 -5.7 -2.0 -999 -999 -12.7 146.9 -14.6 -0.5 -999 -4.4 -999 -999 MySeq6.trna1 Lys 15.0 50.3 21.2 6.0 40.4 34.1 -9.2 23.3 69.9 55.8 75.7 1.8 14.6 -2.1 2.5 -999 72.4 51.9 36.6 54.8 19.2 -999 tRNAscan-SE-2.0/Demo/Example2-tRNAs.ss0000644000543100007160000000452113100451013016515 0ustar pchanlowelabMySeq1.trna1 (13-85) Length: 73 bp Type: Thr Anticodon: TGT at 34-36 (46-48) Score: 78.0 HMM Sc=54.80 Sec struct Sc=23.20 * | * | * | * | * | * | * | Seq: GGCCCTATAGCTCAGGGGTtAGAGCACTGGTCTTGTAAACCAGGGGtCGCGAGTTCAAATCTCGCTGGGGCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. MySeq2.trna1 (6-79) Length: 74 bp Type: Arg Anticodon: TCT at 35-37 (40-42) Score: 75.1 HMM Sc=56.60 Sec struct Sc=18.50 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATGGAcgAGCGCGCTGGACTTCTAATCCAGAGGtTCTGGGTTCGAGTCCCGGCAGAGATG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. MySeq3.trna1 (14-114) Length: 101 bp Type: Ser Anticodon: CGA at 34-36 (47-49) Score: 71.8 Possible intron: 38-56 (51-69) HMM Sc=49.10 Sec struct Sc=22.70 * | * | * | * | * | * | * | * | * | * | Seq: GGCACTATGGCCGAGTGGTtAAGGCGAGAGACTCGAAtggaataaaaagttcggctATCTCTTGGGCTCTGCCCGCGCTGGTTCAAATCCTGCTGGTGTCG Str: >>>>>>>..>>>..........<<<.>>>>>..........................<<<<<.>>>>...<<<<..>>.>>.......<<.<<<<<<<<<. MySeq4.trna1 (6-88) Length: 83 bp Type: Leu Anticodon: AAG at 35-37 (40-42) Score: 65.0 HMM Sc=43.90 Sec struct Sc=21.10 * | * | * | * | * | * | * | * | Seq: GGAGAGATGGCCGAGCGGTccAAGGCGCTGGTTTAAGGcAACCAGTaGCTTCGGGGGCGTGGGTTCGAATCCCACTCTCTTCA Str: >>>>>>>..>>>...........<<<.>>>>>........<<<<<...>>>><<<<..>>>>>.......<<<<<<<<<<<<. MySeq5.trna1 (3-89) Length: 87 bp Type: SeC Anticodon: TCA at 36-38 (38-40) Score: 146.9 HMM Sc=0.00 Sec struct Sc=0.00 * | * | * | * | * | * | * | * | * Seq: GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGCTTCAAACCTGTAGCTGTCTAGCGACAGAGTGGTTCAATTCCACCTTTCGGGCG Str: >>>>>>>.>..>>>>>>....<<<<<<>>>>>>.......<<<<<<.>>>>>....<<<<<.>>>>.......<<<<<.<<<<<<<. MySeq6.trna1 (7-92) Length: 86 bp Type: Lys Anticodon: CTT at 35-37 (41-43) Score: 72.1 ISM: HMM Sc=40.60 Sec struct Sc=31.50 * | * | * | * | * | * | * | * | * Seq: GACACGGTGGCCGAGTGGTttAAGGCATGAGACACTTGATCTCAAACGGTTCTAACCGAaCGCAGGTTCGAATCCTGCCCGTGTCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<...>>>>>.......<<<<<<<<<<<<. tRNAscan-SE-2.0/Demo/Example1-tRNAs.bed0000644000543100007160000000055613100451013016625 0ustar pchanlowelabCELF22B7 12618 12738 CELF22B7.tRNA1-LeuCAA 742 + 12618 12738 0 2 38,46, 0,74, CELF22B7 19479 19561 CELF22B7.tRNA2-SerAGA 816 + 19479 19561 0 1 82, 0, CELF22B7 23693 23765 CELF22B7.tRNA5-ProCGG 715 - 23693 23765 0 1 72, 0, CELF22B7 26366 26439 CELF22B7.tRNA3-PheGAA 825 + 26366 26439 0 1 73, 0, CELF22B7 26919 26992 CELF22B7.tRNA4-PheGAA 825 - 26919 26992 0 1 73, 0, tRNAscan-SE-2.0/Demo/Example1-tRNAs.stats0000644000543100007160000000745513100451013017236 0ustar pchanlowelab tRNAscan-SE v.2.0rc1 (April 2017) scan results (on host pismo.soe.ucsc.edu) Started: Mon Apr 10 01:02:12 PDT 2017 ------------------------------------------------------------ Sequence file(s) to search: Example1.fa Search Mode: Eukaryotic Results written to: Example1-tRNAs.out Output format: Tabular Searching with: Infernal First Pass->Infernal Isotype-specific model scan: Yes Covariance model: /home/pchan/lib/tRNAscan-SE/models/TRNAinf-euk.cm /home/pchan/lib/tRNAscan-SE/models/TRNAinf-euk-SeC.cm Infernal first pass cutoff score: 10 Temporary directory: /tmp tRNA secondary structure predictions saved to: Example1-tRNAs.ss tRNA predictions saved to: Example1-tRNAs.bed Isotype specific predictions saved to: Example1-tRNAs.iso Search log saved in: Example1-tRNAs.log Search statistics saved in: Example1-tRNAs.stats Reporting HMM/2' structure score breakdown ------------------------------------------------------------ First-pass Stats: --------------- Sequences read: 1 Seqs w/at least 1 hit: 1 Bases read: 40222 (x2 for both strands) Bases in tRNAs: 420 tRNAs predicted: 5 Av. tRNA length: 84 Script CPU time: 0.02 s Scan CPU time: 0.77 s Scan speed: 104.5 Kbp/sec First pass search(es) ended: Mon Apr 10 01:02:13 PDT 2017 Infernal Stats: ----------- Candidate tRNAs read: 5 Infernal-confirmed tRNAs: 5 Bases scanned by Infernal: 520 % seq scanned by Infernal: 0.6 % Script CPU time: 0.07 s Infernal CPU time: 8.38 s Scan speed: 62.1 bp/sec Infernal analysis of tRNAs ended: Mon Apr 10 01:02:25 PDT 2017 Overall scan speed: 8706.1 bp/sec tRNAs decoding Standard 20 AA: 5 Selenocysteine tRNAs (TCA): 0 Possible suppressor tRNAs (CTA,TTA): 0 tRNAs with undetermined/unknown isotypes: 0 tRNAs with mismatch isotypes: 0 Predicted pseudogenes: 0 ------- Total tRNAs: 5 tRNAs with introns: 1 | Leu-CAA: 1 | Isotype / Anticodon Counts: Ala : 0 (0) AGC: GGC: CGC: TGC: Gly : 0 (0) ACC: GCC: CCC: TCC: Pro : 1 (1) AGG: GGG: CGG: 1 TGG: Thr : 0 (0) AGT: GGT: CGT: TGT: Val : 0 (0) AAC: GAC: CAC: TAC: Ser : 1 (1) AGA: 1 GGA: CGA: TGA: ACT: GCT: Arg : 0 (0) ACG: GCG: CCG: TCG: CCT: TCT: Leu : 1 (1) AAG: GAG: CAG: TAG: CAA: 1 TAA: Phe : 2 (2) AAA: GAA: 2 Asn : 0 (0) ATT: GTT: Lys : 0 (0) CTT: TTT: Asp : 0 (0) ATC: GTC: Glu : 0 (0) CTC: TTC: His : 0 (0) ATG: GTG: Gln : 0 (0) CTG: TTG: Ile : 0 (0) AAT: GAT: TAT: Met : 0 (0) CAT: Tyr : 0 (0) ATA: GTA: Supres: 0 (0) CTA: TTA: Cys : 0 (0) ACA: GCA: Trp : 0 (0) CCA: SelCys: 0 (0) TCA: tRNAscan-SE-2.0/lib/0000755000543100007160000000000013167521467013414 5ustar pchanlowelabtRNAscan-SE-2.0/lib/models/0000755000543100007160000000000013167523403014667 5ustar pchanlowelabtRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Ile.cm0000644000543100007160000017247412573631651021130 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Ile-2nd-align STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:54 2015 COM [1] cmbuild --hand --enone Ile-final-vert.cm ../Ile-2nd-align.sto COM [2] cmcalibrate --seed 208 Ile-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 3281815814 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9418 0.71866 ECMLC 0.69666 -6.66771 2.30932 1600000 624061 0.001923 ECMGC 0.31784 -47.24317 -32.30362 1600000 46161 0.008665 ECMLI 0.74118 -5.59712 2.76196 1600000 588705 0.002038 ECMGI 0.34897 -42.42545 -28.92003 1600000 44552 0.008978 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 122 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 16 38 101 123 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 40 102 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - U - + MR 3 2 3 5 5 23 48 100 122 -6.145 -0.021 -14.876 -15.088 -15.980 -0.273 -2.336 -1.618 1.405 D 4 2 3 5 5 14 35 99 120 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 43 100 122 -5.854 -0.039 -9.365 -7.533 -8.639 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 103 G C = = MP 6 5 3 10 6 24 47 99 121 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.583 -10.632 -12.981 2.097 -14.772 -12.797 -9.840 -12.992 -11.846 3.457 -12.301 -0.435 -9.937 -12.794 -11.905 -11.598 ML 7 5 3 10 6 15 36 97 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 36 97 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 33 95 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 38 99 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 38 98 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 102 G C = = MP 12 11 6 16 6 23 45 97 119 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.817 -10.555 -15.721 -2.422 -15.506 -11.754 -9.853 -15.344 -11.916 3.977 -12.122 -3.970 -10.202 -12.207 -12.281 -14.632 ML 13 11 6 16 6 15 36 95 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 36 95 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 33 93 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 37 97 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 38 96 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 101 A U = = MP 18 17 6 22 6 22 43 95 117 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -3.242 -12.232 3.886 -14.362 -15.520 -3.930 -2.254 -11.792 -1.575 -12.462 -1.649 -3.563 -5.333 -11.653 -3.891 ML 19 17 6 22 6 15 36 93 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 36 93 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 32 91 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 37 95 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 37 94 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 100 A U = = MP 24 23 6 28 6 20 41 93 115 -3.718 -15.934 -0.114 -14.710 -14.990 -15.385 -5.067 0.077 -9.789 3.332 -6.072 -0.425 -3.742 -1.013 -10.226 1.414 -10.472 -4.671 -1.485 -1.172 -7.993 -8.754 ML 25 23 6 28 6 15 36 91 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 35 91 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 32 89 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 40 92 113 -9.059 -9.322 -0.007 -10.977 -11.754 -11.414 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 37 92 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 99 a u = = MP 30 29 6 34 6 18 39 91 112 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.654 -2.547 -9.704 2.901 -0.750 -3.309 1.195 -3.715 -9.696 1.453 -10.201 -4.030 1.082 -1.901 -3.243 -8.534 ML 31 29 6 34 6 14 35 89 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 35 89 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 32 87 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 36 90 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 36 90 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 98 U A = = MP 36 35 6 40 6 16 37 89 110 -3.521 -15.934 -0.132 -14.710 -14.990 -15.385 -12.455 -3.831 -12.005 -3.852 1.148 -4.909 1.427 -3.787 -12.033 -8.348 -12.270 -10.409 3.321 -4.634 -0.607 -2.727 ML 37 35 6 40 6 14 34 88 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 34 87 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 32 86 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 36 88 109 -9.254 -9.517 -0.006 -11.172 -11.948 -11.609 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 35 88 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 97 G C = = MP 42 41 6 46 4 14 35 87 108 -15.218 -15.425 -0.000 -13.839 -12.717 -10.620 -13.185 2.251 -14.864 -12.578 -9.843 -13.184 -11.857 3.484 -12.271 -4.501 -9.975 -12.687 -11.957 -11.809 ML 43 41 6 46 4 13 33 87 109 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 33 86 108 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 31 85 107 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 34 88 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 34 87 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 12 33 85 106 -16.127 -0.000 -14.781 -12.760 -5.155 -13.943 1.990 D 49 47 6 50 3 10 31 83 105 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 33 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - G - + - ML 51 50 3 53 2 11 32 84 105 -16.782 -0.000 -4.840 -11.971 1.872 -1.717 D 52 50 3 53 2 10 31 83 104 -8.445 -0.004 IL 53 53 3 53 2 11 32 85 106 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 31 83 104 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 41 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 41 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 41 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 12 28 C G = = MP 58 57 1 62 6 2 3 23 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.046 -13.328 -12.364 -9.565 -2.389 -4.134 3.528 -11.630 -12.468 -9.536 -4.144 -3.402 2.022 -12.881 -8.417 -11.269 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 C G = = MP 64 63 6 68 6 2 3 21 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 3.860 -11.630 -12.468 -9.537 -12.588 -11.733 -3.015 -12.881 0.431 -11.270 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 U A = = MP 70 69 6 74 6 2 3 19 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.856 0.894 -12.508 1.026 -11.630 -12.468 -9.537 -12.588 -11.733 3.573 -12.881 -3.949 -11.270 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 G A = = MP 76 75 6 80 4 2 3 17 35 -15.218 -15.425 -0.000 -13.839 -2.861 -10.710 -12.233 -7.023 -14.199 -15.419 -9.686 -12.266 3.830 -3.561 -12.463 -1.637 0.291 -13.528 -11.532 -10.834 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 14 33 -16.127 -0.115 -3.711 2.000 -12.065 -11.312 -11.398 D 83 81 6 84 3 0 0 17 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 13 32 -16.013 -0.345 -2.231 1.430 -0.956 -0.895 -1.991 D 86 84 3 87 3 0 0 12 30 -13.842 -9.355 -0.002 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - a - + - ML 88 87 3 90 3 1 1 12 31 -15.667 -2.699 -0.241 0.797 0.052 -4.079 0.221 D 89 87 3 90 3 0 0 11 29 -15.675 -11.188 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - + - ML 91 90 3 93 3 1 1 12 31 -12.969 -5.120 -0.042 -0.194 -0.405 -5.995 1.236 D 92 90 3 93 3 0 0 10 29 -17.375 -0.798 -1.235 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - + - ML 94 93 3 96 3 1 2 11 29 -15.167 -0.000 -13.821 0.342 -3.099 1.325 -3.179 D 95 93 3 96 3 0 0 9 27 -16.506 -3.364 -0.147 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - c - + - ML 97 96 3 99 3 1 1 9 28 -15.294 -0.712 -1.360 -0.280 0.719 -2.123 0.380 D 98 96 3 99 3 0 0 7 26 -16.359 -11.872 -0.000 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - c - + - ML 100 99 3 102 3 1 1 6 10 -3.084 -0.181 -13.236 -0.803 0.978 -7.782 0.539 D 101 99 3 102 3 0 0 3 7 -16.942 -0.001 -11.333 IL 102 102 3 102 3 1 1 5 9 -6.243 -0.022 -8.943 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.284 -1.120 -5.946 0.123 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.001 -10.990 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 26 45 -6.466 -0.017 -14.875 -15.087 -15.979 0.816 -3.267 1.037 -3.573 D 110 108 2 111 5 0 0 25 43 -5.708 -0.423 -4.969 -3.344 -3.257 IL 111 111 3 111 5 1 1 26 45 -5.565 -0.048 -7.244 -9.076 -8.349 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 49 u a = = MP 112 111 3 116 6 2 2 25 43 -15.995 -5.984 -0.023 -14.710 -14.990 -15.385 -2.207 -10.027 -10.321 -3.807 1.978 -4.580 1.950 -1.333 -5.441 -4.198 -10.692 -4.669 2.863 -4.780 -5.701 -5.725 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 24 43 -6.009 -0.035 -9.520 -7.688 -8.794 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 47 C G = = MP 118 117 6 122 6 2 2 23 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 3.115 -11.630 -12.468 -9.537 -12.588 -11.733 2.853 -12.881 -3.210 -11.270 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 46 A U = = MP 124 123 6 128 6 2 2 21 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -4.522 -12.232 3.936 -14.364 -15.522 -9.823 -12.274 -11.792 -2.379 -12.462 -7.984 -1.189 -13.537 -11.655 -6.193 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 45 C G = = MP 130 129 6 134 6 2 2 19 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -6.444 -12.508 3.926 -11.630 -12.468 -9.537 -12.588 -11.733 -0.539 -12.881 -3.383 -11.270 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 44 U A = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.501 -3.164 -12.035 -2.997 -0.170 -2.070 0.735 -11.364 -12.069 -3.374 -12.297 -10.492 3.588 -12.455 -0.245 -10.845 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - + - ML 142 141 6 144 3 1 1 14 32 -16.127 -0.000 -14.781 -1.860 -5.069 -5.408 1.876 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - * - ML 154 153 3 156 3 1 1 8 27 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.435 -0.017 -14.781 1.957 -11.845 -3.114 -11.316 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 7 12 -4.560 -0.072 -7.260 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - G - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -1.127 -10.918 1.797 -3.907 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 51 72 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 4 53 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 50 - A - + - ML 166 165 2 168 3 1 3 51 72 -16.127 -0.003 -9.080 1.669 -0.979 -3.888 -2.033 D 167 165 2 168 3 0 1 49 71 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 52 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 51 - U - + - ML 169 168 3 171 2 1 2 50 71 -16.780 -0.000 -0.606 0.143 -5.178 1.145 D 170 168 3 171 2 0 1 49 70 -8.812 -0.003 IL 171 171 3 171 2 1 2 51 72 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 49 70 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 52 69 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 53 68 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 54 67 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 55 66 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 56 65 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 57 64 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 58 63 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.431 -15.112 -3.707 -0.115 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - A - + - ML 216 215 6 218 3 1 1 13 31 -12.448 -0.001 -11.102 1.996 -8.548 -7.799 -7.923 D 217 215 6 218 3 0 0 8 26 -17.429 -12.942 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - A - + - ML 219 218 3 221 3 1 1 12 30 -12.448 -0.001 -11.102 1.996 -8.548 -7.799 -7.923 D 220 218 3 221 3 0 0 7 25 -17.429 -12.942 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - U - + - ML 222 221 3 224 3 1 1 10 28 -12.448 -0.001 -11.102 -8.966 -7.987 -10.112 1.998 D 223 221 3 224 3 0 0 5 24 -17.429 -12.942 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.996 -8.548 -7.799 -7.923 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 37 58 -16.127 -0.115 -3.711 IL 230 230 2 230 3 1 2 39 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 70 - a - + - ML 231 230 2 233 3 1 3 37 58 -0.351 -2.210 -14.667 0.981 -0.291 -3.551 0.168 D 232 230 2 233 3 0 0 36 57 -0.007 -9.355 -8.233 IL 233 233 3 233 3 1 2 36 57 -10.501 -0.001 -13.201 0.000 0.000 0.000 0.000 [ MATL 62 ] 72 - U - + - ML 234 233 3 236 5 1 3 35 56 -15.061 -0.000 -14.876 -15.088 -15.980 -3.505 -0.454 -9.703 1.669 D 235 233 3 236 5 0 0 33 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 35 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 73 96 A U = = MP 237 236 3 241 6 2 3 34 55 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.082 -14.373 -15.520 -9.831 -12.275 -11.792 2.602 -12.462 -2.096 -9.755 -13.536 -11.661 0.290 ML 238 236 3 241 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 74 95 G C = = MP 243 242 6 247 6 2 3 32 53 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.514 -0.627 -10.380 1.109 -11.588 -11.084 -6.670 -10.986 -10.679 3.534 -10.991 0.292 -2.826 -2.700 -8.672 -3.684 ML 244 242 6 247 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 30 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 31 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 75 94 G C = = MP 249 248 6 253 6 2 2 30 51 -5.102 -4.917 -0.095 -10.448 -14.990 -10.441 -2.628 -0.342 -12.377 2.353 -14.454 -14.284 -9.826 -12.416 -11.804 3.295 -12.420 -3.100 -9.792 -13.315 -11.710 -10.979 ML 250 248 6 253 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 28 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 28 50 -7.701 -7.964 -1.269 -0.800 -10.395 -10.056 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 27 49 -7.013 -5.101 -0.060 -8.692 -9.798 0.000 0.000 0.000 0.000 [ MATP 66 ] 77 92 G C = = MP 255 254 6 259 6 2 2 28 49 -15.918 -15.857 -0.017 -8.537 -14.914 -6.787 -13.542 -0.805 -14.950 -0.859 -15.328 -11.760 -9.774 -14.736 -11.832 3.873 -12.063 -5.556 -2.317 -12.184 -12.157 -13.722 ML 256 254 6 259 6 1 1 26 47 -12.593 -12.939 -7.653 -0.028 -12.789 -6.165 1.613 -0.169 -5.515 -5.016 MR 257 254 6 259 6 1 1 27 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 23 45 -10.309 -9.007 -4.804 -5.487 -5.504 -0.125 IL 259 259 5 259 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 27 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 78 91 G C = = MP 261 260 6 265 4 2 2 26 47 -15.124 -15.331 -0.037 -5.301 -3.652 0.815 -13.216 -2.591 -1.791 -12.377 -9.749 -13.206 -11.769 3.773 -12.162 -4.858 -9.902 -12.537 -11.892 -11.845 ML 262 260 6 265 4 1 1 25 46 -9.733 -9.915 -0.007 -8.644 -0.231 1.642 -7.048 -5.724 MR 263 260 6 265 4 1 1 26 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 23 44 -8.863 -8.544 -6.560 -0.022 IL 265 265 5 265 4 1 1 27 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 1 24 45 -4.382 -0.071 -14.732 -1.225 -1.104 -5.937 1.628 D 268 266 6 269 3 0 0 22 44 -12.670 -0.842 -1.177 IL 269 269 3 269 3 1 1 24 46 -2.005 -0.416 -9.531 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - U - + - ML 270 269 3 272 3 1 1 23 44 -16.106 -0.000 -14.760 -1.514 -2.650 -2.786 1.742 D 271 269 3 272 3 0 0 22 43 -11.505 -0.025 -5.896 IL 272 272 3 272 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - a - + - ML 273 272 3 275 3 1 1 22 43 -16.127 -0.044 -5.042 0.950 0.065 -1.380 -0.649 D 274 272 3 275 3 0 0 20 42 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 23 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - A - + - ML 276 275 3 278 3 1 1 21 42 -3.444 -0.289 -3.481 1.678 -2.974 -0.852 -3.063 D 277 275 3 278 3 0 0 20 41 -3.361 -1.318 -0.995 IL 278 278 3 278 3 1 1 22 44 -1.228 -0.805 -10.897 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 9 27 -15.972 -0.021 -6.086 1.963 -4.075 -5.864 -5.372 D 280 278 3 281 3 0 0 9 27 -14.258 -6.989 -0.011 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - A - + - ML 282 281 3 284 3 1 1 6 11 -5.621 -0.041 -6.986 1.243 -1.805 0.223 -2.485 D 283 281 3 284 3 0 0 3 8 -14.424 -9.937 -0.002 IL 284 284 3 284 3 1 1 6 11 -5.138 -0.048 -7.838 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.346 0.783 -5.545 1.143 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ile-2nd-align LENG 90 MAXL 166 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:54 2015 COM [1] cmbuild --hand --enone Ile-final-vert.cm ../Ile-2nd-align.sto NSEQ 1085 EFFN 7.710857 CKSUM 3281815814 STATS LOCAL MSV -8.6995 0.71866 STATS LOCAL VITERBI -9.6403 0.71866 STATS LOCAL FORWARD -3.7425 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30794 1.56279 1.37708 1.31766 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 0.00000 * 1 1.46443 3.31886 0.37138 3.15087 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 2 3.33081 4.57516 0.05871 4.51421 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 3 0.03438 4.86235 4.03806 4.77530 3 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 4 0.98677 1.75075 1.37426 1.60669 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.08284 2.65958 4.65383 0.25302 1.49813 1.09861 0.40547 5 1.20424 1.48691 1.51344 1.37098 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 6 2.15342 1.19631 2.05058 0.79198 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.09249 2.54063 4.65383 0.22632 1.59682 1.09861 0.40547 7 1.41789 3.52826 0.36587 3.35741 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 8 3.79495 3.43448 4.32457 0.07039 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 9 3.03406 3.87084 0.14728 2.68840 11 G + - , 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 10 2.64775 0.60702 2.34284 1.24422 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 11 4.02110 0.20203 3.87864 1.93577 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 12 3.18752 1.23677 3.14080 0.46975 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 13 2.71606 3.44890 0.21311 2.36429 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 14 0.03284 4.73438 4.35635 4.53792 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08284 4.65383 2.65958 1.46634 0.26236 1.09861 0.40547 15 0.59482 1.93070 1.90188 1.87077 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.20579 4.59147 1.73806 1.46634 0.26236 2.23502 0.11316 16 1.01117 1.44962 2.29139 1.20256 18 a + - _ 1.38629 1.38629 1.38629 1.38629 1.03711 4.41028 0.45670 1.46634 0.26236 3.24624 0.03970 17 1.33348 1.57062 1.98440 0.93889 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.43730 3.43948 1.13276 1.46634 0.26236 0.56949 0.83429 18 1.19853 2.39763 0.74210 2.03015 20 g + - _ 1.38629 1.38629 1.38629 1.38629 0.03145 4.16810 4.16810 1.46634 0.26236 2.17762 0.12026 19 1.40300 1.17314 2.11632 1.12617 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.34877 4.22697 1.27351 1.46634 0.26236 3.67570 0.02566 20 1.53698 1.08258 2.30462 1.06001 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.11252 2.44699 3.91874 0.40909 1.09140 0.03531 3.36122 21 0.68950 1.91146 2.54157 1.30354 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 22 0.20853 2.95613 3.25878 2.32518 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 23 0.38524 3.30515 1.46012 2.97968 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 24 2.81186 4.01085 0.10706 3.75867 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 25 1.34194 2.54676 0.56718 2.37295 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.01960 4.65383 4.61660 1.46634 0.26236 1.09861 0.40547 26 0.93195 2.68626 0.80658 2.38927 29 g + - , 1.38629 1.38629 1.38629 1.38629 0.02839 3.99181 4.65346 0.83308 0.57041 1.07395 0.41803 27 1.99554 1.02508 1.94856 1.01387 31 u = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 28 3.55870 0.67452 3.34641 0.85117 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 29 0.10605 4.39028 2.83938 3.51468 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 30 4.14429 0.14012 4.01463 2.33469 34 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 31 2.18282 1.38899 2.07855 0.66779 35 U = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 32 2.45014 2.90018 3.39560 0.19215 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 33 4.06240 3.82361 4.61284 0.05022 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 34 4.08352 5.11164 0.03355 4.59343 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 35 0.03284 4.73438 4.35635 4.53792 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 36 4.06240 3.82361 4.61284 0.05022 40 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 37 0.07564 4.15785 3.24060 4.01367 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02860 3.98101 4.65383 0.82516 0.57654 1.09861 0.40547 38 2.08711 3.61678 0.21922 3.08045 43 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 39 0.74168 2.16914 1.28560 2.01796 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 40 2.56397 4.15848 0.11959 3.90752 45 G = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 41 3.62860 3.14724 4.18765 0.08851 46 U = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 42 0.91603 3.51014 0.62824 3.31118 47 G = - > 1.38629 1.38629 1.38629 1.38629 0.03212 3.81274 4.65383 0.71406 0.67266 1.09861 0.40547 43 0.88601 2.11364 1.20122 1.79530 49 a = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 44 0.36707 2.04091 2.76764 2.16704 50 A + - , 1.38629 1.38629 1.38629 1.38629 0.02070 4.65383 4.51352 1.46634 0.26236 1.09861 0.40547 45 1.62483 1.35055 2.65899 0.74668 51 u + - , 1.38629 1.38629 1.38629 1.38629 1.65666 4.65239 0.22354 1.46634 0.26236 1.14760 0.38184 46 1.80805 1.30439 1.07542 1.49819 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 47 1.80296 1.30595 1.07731 1.49717 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 48 1.80056 1.30668 1.07820 1.49669 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 49 1.79949 1.30701 1.07860 1.49648 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 50 1.79907 1.30714 1.07876 1.49639 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 51 1.79895 1.30718 1.07880 1.49637 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 52 1.79900 1.30716 1.07878 1.49638 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.45994 0.08931 53 0.51484 2.20645 2.02655 1.82931 59 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07317 3.34451 3.34451 1.46634 0.26236 4.37751 0.01264 54 0.51484 2.20645 2.02655 1.82931 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07317 3.34451 3.34451 1.46634 0.26236 4.37751 0.01264 55 1.68670 1.83976 2.13564 0.62018 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07317 3.34451 3.34451 1.46634 0.26236 4.37751 0.01264 56 0.51484 2.20645 2.02655 1.82931 62 A + - _ 1.38629 1.38629 1.38629 1.38629 0.34878 3.34451 1.35027 1.46634 0.26236 4.37751 0.01264 57 1.73026 1.22020 1.16210 1.53821 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 58 1.73018 1.22024 1.16213 1.53819 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 59 1.73019 1.22024 1.16213 1.53819 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 60 1.73035 1.22017 1.16207 1.53824 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 61 1.73078 1.21998 1.16191 1.53837 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 62 1.73171 1.21959 1.16157 1.53864 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 63 1.73350 1.21882 1.16092 1.53917 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02353 3.76104 64 0.89601 1.59090 2.32377 1.23733 70 a + - , 1.38629 1.38629 1.38629 1.38629 0.89714 0.54001 4.65383 0.03238 3.44648 1.09861 0.40547 65 2.65707 1.76671 3.36883 0.32224 72 U + - , 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 66 0.90810 3.06077 0.79678 2.31182 73 g = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 67 1.62101 2.74575 0.42441 2.47756 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 68 1.24590 2.83787 0.53595 2.67870 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.04371 3.42076 4.59729 0.50663 0.92262 1.09861 0.40547 69 2.29355 3.53206 0.18587 3.23227 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.02678 4.65327 4.08093 1.46634 0.26236 1.11781 0.39600 70 1.73717 2.59094 0.39752 2.56336 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.03886 4.64588 3.55733 1.46634 0.26236 1.34302 0.30253 71 2.01189 1.98594 3.00365 0.38654 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05897 3.04756 4.62679 0.54929 0.86124 0.81418 0.58520 72 2.14816 2.46133 2.77904 0.30669 82 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01946 4.64203 4.64203 1.46634 0.26236 0.64001 0.74926 73 0.90374 1.47686 1.99029 1.46994 83 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04154 4.65383 3.46853 1.46634 0.26236 1.09861 0.40547 74 0.36061 2.63783 1.95616 2.40982 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.17657 2.50297 2.52552 0.67479 0.71185 0.96259 0.48111 75 0.09281 3.52248 3.52424 3.51895 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03261 4.56963 3.82951 1.46634 0.26236 2.38471 0.09664 76 0.70941 2.17406 1.38188 1.94319 88 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04359 3.64464 4.10283 0.67028 0.71655 2.52703 0.08327 77 2.39168 0.99972 3.00324 0.71149 90 u + - _ 1.38629 1.38629 1.38629 1.38629 0.05068 4.55274 3.24734 1.46634 0.26236 0.42701 1.05687 78 2.69516 0.37977 2.53596 1.77629 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02025 4.60263 4.60263 1.46634 0.26236 0.56359 0.84203 79 3.43171 0.18569 3.38172 2.27160 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.01953 4.63895 4.63895 1.46634 0.26236 0.57903 0.82199 80 2.85975 0.56291 2.64278 1.19732 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 81 2.80079 0.49813 2.55045 1.37229 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 82 3.12229 0.89096 2.85524 0.71715 96 u = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 83 3.58373 0.40301 3.34147 1.31476 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 84 0.80530 2.19404 1.21073 1.94073 98 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 85 1.52568 1.58637 1.37924 1.12058 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 86 1.86082 1.31178 1.69480 0.93782 100 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 87 5.07109 4.30671 4.84701 0.02799 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 88 4.63544 0.07285 4.46267 3.01535 102 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 89 3.40776 0.44911 3.13127 1.25518 103 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03069 3.87784 4.65383 0.75528 0.63465 1.09861 0.40547 90 1.47187 2.17089 2.14314 0.61777 105 U + - : 1.38629 1.38629 1.38629 1.38629 0.00966 4.64426 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Tyr.cm0000644000543100007160000017247612573631650021176 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Tyr-2nd-align STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:14:00 2015 COM [1] cmbuild --hand --enone Tyr-final-vert.cm ../Tyr-2nd-align.sto COM [2] cmcalibrate --seed 208 Tyr-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 2768569377 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9771 0.71869 ECMLC 0.59681 -8.55097 1.50862 1600000 485902 0.002470 ECMGC 0.32205 -48.50731 -33.96330 1600000 43278 0.009243 ECMLI 0.60674 -8.05088 1.77526 1600000 466025 0.002575 ECMGI 0.32684 -45.48846 -31.24039 1600000 42121 0.009496 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 123 -15.012 -16.257 -0.258 -2.610 IL 1 1 2 1 4 24 46 101 125 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 25 47 102 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - A - + MR 3 2 3 5 5 26 47 100 124 -14.803 -0.000 -14.618 -14.831 -15.722 1.975 -5.397 -10.458 -4.461 D 4 2 3 5 5 21 43 99 123 -13.036 -0.007 -8.042 -12.094 -10.088 IR 5 5 3 5 5 19 39 100 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 G C = = MP 6 5 3 10 6 26 47 99 123 -15.994 -15.933 -0.000 -14.710 -14.989 -15.384 -13.750 -10.557 -15.462 -1.501 -15.473 -11.779 -9.852 -15.152 -11.913 3.951 -12.127 -2.469 -10.192 -12.224 -12.266 -14.311 ML 7 5 3 10 6 18 38 98 121 -7.112 -7.458 -0.574 -1.867 -7.308 -4.838 -0.294 -1.254 1.092 -0.660 MR 8 5 3 10 6 18 37 97 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 33 95 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 38 99 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 39 98 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 G C = = MP 12 11 6 16 6 26 45 97 121 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.042 -10.694 -12.238 -1.850 -14.371 -15.385 -9.821 -12.282 -11.792 3.160 -12.457 2.687 -2.119 -13.513 -11.656 -3.180 ML 13 11 6 16 6 18 37 95 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 37 95 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 33 93 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 38 97 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 38 96 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 U A = = MP 18 17 6 22 6 25 43 95 119 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.728 -5.081 -12.508 -2.469 -11.630 -12.468 -9.537 -12.588 -11.732 3.772 -2.774 0.585 -1.624 ML 19 17 6 22 6 17 36 93 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 36 93 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 32 91 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 38 95 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 38 94 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 A U = = MP 24 23 6 28 6 23 41 93 117 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -2.783 -12.232 3.955 -14.373 -15.528 -9.831 -12.275 -11.792 -2.429 -12.462 -3.874 -9.756 -13.537 -11.662 -3.562 ML 25 23 6 28 6 17 36 91 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 36 91 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 14 32 89 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 37 93 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 37 92 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 A U = = MP 30 29 6 34 6 21 39 91 115 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.397 -5.097 -10.514 3.282 -11.757 -11.303 -3.878 -11.088 -4.630 2.143 -4.599 0.515 -7.092 -10.511 -2.411 -9.419 ML 31 29 6 34 6 17 35 90 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 35 89 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 32 87 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 36 91 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 90 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 G C = = MP 36 35 6 40 6 19 37 89 113 -15.995 -15.934 -0.011 -7.084 -14.990 -15.385 -10.083 -3.881 -9.911 2.596 -11.057 -10.532 -6.126 -10.584 -10.324 3.009 -3.654 -0.224 -1.798 -9.784 -0.789 -5.802 ML 37 35 6 40 6 17 35 88 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 34 88 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 32 86 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 35 89 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 35 88 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 A U = = MP 42 41 6 46 4 17 35 87 111 -15.207 -15.414 -0.000 -13.828 -12.026 -10.686 -12.221 3.556 -14.363 -15.517 -9.820 -12.264 -11.781 1.070 -3.491 0.965 -9.745 -13.527 -11.651 -3.366 ML 43 41 6 46 4 16 34 86 110 -7.020 -7.203 -0.045 -5.932 -1.811 -4.226 1.841 -3.680 MR 44 41 6 46 4 15 33 86 110 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 31 85 109 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 34 88 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 34 87 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 15 33 85 109 -16.127 -0.000 -14.781 -9.405 -5.670 -5.145 1.982 D 49 47 6 50 3 13 31 84 107 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 33 86 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - + - ML 51 50 3 53 2 14 32 84 108 -16.782 -0.000 -2.409 -12.415 1.930 -11.396 D 52 50 3 53 2 13 31 83 107 -8.445 -0.004 IL 53 53 3 53 2 14 32 85 108 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 31 83 107 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 12 49 71 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 12 49 71 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 31 53 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 28 G C = = MP 58 57 1 62 6 2 3 31 53 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.234 -10.670 -12.491 -1.808 -14.522 -13.810 -9.835 -12.525 -11.814 3.809 -12.394 0.653 -9.827 -13.188 -11.755 -3.030 ML 59 57 1 62 6 1 1 29 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 29 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 31 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 30 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G = = MP 64 63 6 68 6 2 3 29 51 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 3.957 -11.630 -12.468 -9.537 -12.588 -11.733 -2.376 -12.881 -1.875 -11.270 ML 65 63 6 68 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 29 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 U A = = MP 70 69 6 74 6 2 3 27 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -2.742 -12.508 2.376 -11.630 -12.468 -9.537 -12.588 -11.733 3.115 -12.881 0.996 -11.270 ML 71 69 6 74 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 26 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 27 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 26 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 G A = = MP 76 75 6 80 4 2 3 25 47 -15.218 -15.425 -0.000 -13.839 -12.097 -10.798 -12.242 -7.110 -3.718 -14.872 -9.002 -12.210 3.869 -3.097 -1.578 -0.395 -3.559 -13.472 -10.908 -10.861 ML 77 75 6 80 4 1 1 25 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 45 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 23 45 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 83 81 6 84 3 0 0 22 43 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - + - ML 85 84 3 87 3 1 1 22 44 -16.127 -0.720 -1.348 -0.790 -4.612 1.600 -1.516 D 86 84 3 87 3 0 0 21 43 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 21 43 -15.408 -3.678 -0.117 -0.612 -0.924 -1.311 1.272 D 89 87 3 90 3 0 0 20 42 -16.199 -11.712 -0.000 IL 90 90 3 90 3 1 1 22 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 18 40 -11.731 -4.835 -0.052 -5.046 -4.880 -0.528 1.697 D 92 90 3 93 3 0 0 20 42 -17.476 -0.822 -1.203 IL 93 93 3 93 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - G - + - ML 94 93 3 96 3 1 2 21 43 -15.239 -0.000 -13.894 -0.473 -4.606 1.582 -2.031 D 95 93 3 96 3 0 0 16 37 -16.425 -5.363 -0.036 IL 96 96 3 96 3 1 1 23 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 97 96 3 99 3 1 1 20 42 -15.269 -0.333 -2.279 -0.594 -1.158 -0.329 1.066 D 98 96 3 99 3 0 0 12 34 -16.390 -9.161 -0.003 IL 99 99 3 99 3 1 1 22 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 19 41 -2.777 -0.228 -13.592 -1.639 -1.610 -2.011 1.634 D 101 99 3 102 3 0 0 7 29 -16.714 -0.001 -11.106 IL 102 102 3 102 3 1 1 21 42 -1.223 -0.809 -10.382 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 -0.409 -1.706 -1.903 1.419 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 26 45 -6.056 -0.022 -14.876 -15.088 -15.980 0.281 -4.018 1.432 -5.335 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.936 -0.037 -7.614 -9.447 -8.720 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 g u = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.227 -3.329 -5.834 -2.821 -2.733 -8.571 -2.052 -4.388 1.027 1.201 -8.361 2.223 2.169 -6.157 -2.125 0.530 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 U A = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.337 -10.041 -10.333 -0.487 -6.589 -3.508 1.194 -9.849 -10.193 -2.554 -10.703 -4.309 3.373 -10.518 -0.165 0.504 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 G C = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.220 -5.054 -12.472 2.771 -14.511 -13.876 -9.833 -12.506 -11.812 3.146 -12.398 -1.803 -9.821 -13.208 -11.748 -11.076 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.471 -6.127 -14.624 0.853 -15.326 -11.911 -9.850 -14.478 -11.902 3.806 -12.156 -2.410 -10.145 -12.308 -12.197 -13.344 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 g c = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -4.376 1.231 -9.787 2.610 -10.918 -5.221 -5.984 -2.842 -10.224 2.625 -10.471 -0.531 -2.221 -2.450 -7.992 -4.339 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -12.982 1.009 -14.348 0.990 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.668 -4.720 -13.814 1.986 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 0.674 -11.146 1.265 -11.003 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - c - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.756 0.778 -9.471 -0.749 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 50 73 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 6 52 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 5 50 73 -16.127 -0.005 -8.111 1.043 -2.480 -0.382 -0.011 D 167 165 2 168 3 0 4 48 72 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - g - + - ML 169 168 3 171 2 1 4 49 72 -16.777 -0.000 -0.649 -1.015 0.595 0.440 D 170 168 3 171 2 0 3 48 71 -9.098 -0.003 IL 171 171 3 171 2 1 5 50 73 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 48 71 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 36 59 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 39 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - A - + - ML 231 230 2 233 3 1 4 36 59 -5.488 -0.033 -14.781 1.979 -11.578 -5.630 -4.727 D 232 230 2 233 3 0 0 34 58 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 36 59 -5.425 -0.039 -8.125 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - C - + - ML 234 233 3 236 5 1 4 35 58 -15.061 -0.003 -8.989 -15.088 -15.980 -5.071 1.530 -2.329 -0.179 D 235 233 3 236 5 0 0 34 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 35 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 93 A U = = MP 237 236 3 241 6 2 4 34 57 -15.992 -6.334 -0.018 -14.708 -14.987 -15.382 -12.034 -10.694 -12.229 3.679 -14.370 -15.525 -9.828 -12.272 -11.789 1.331 -12.459 -0.582 -9.753 -13.534 -11.659 -10.828 ML 238 236 3 241 6 1 1 32 55 -8.262 -8.608 -3.322 -0.192 -8.457 -5.987 -1.720 -2.961 1.753 -2.348 MR 239 236 3 241 6 1 1 32 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 33 56 -5.688 -0.044 -9.199 -7.367 -8.473 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 91 G C = = MP 243 242 6 247 6 2 4 32 55 -15.992 -15.931 -0.000 -14.708 -14.987 -15.382 -9.961 -6.604 -9.780 1.078 -10.911 -10.375 -2.703 -10.470 -10.218 3.665 -10.464 -0.473 -3.244 -3.181 -4.288 -4.353 ML 244 242 6 247 6 1 1 30 54 -8.262 -8.608 -3.322 -0.192 -8.457 -5.987 -1.720 -2.961 1.753 -2.348 MR 245 242 6 247 6 1 1 30 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 31 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 90 A U = = MP 249 248 6 253 6 2 2 30 53 -15.992 -15.931 -0.037 -14.708 -14.987 -5.327 -12.034 -2.622 -12.229 3.563 -14.370 -15.524 -9.828 -12.272 -3.295 1.417 -12.459 0.185 -9.753 -13.534 -11.659 -3.244 ML 250 248 6 253 6 1 1 29 52 -8.262 -8.608 -0.231 -3.016 -8.457 -5.987 1.746 -2.504 -2.122 -2.059 MR 251 248 6 253 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 26 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 30 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 29 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 89 G C = = MP 255 254 6 259 6 2 2 28 51 -15.958 -15.898 -0.094 -7.855 -10.049 -4.109 -13.612 -10.526 -15.082 -0.728 -15.385 -11.787 -9.816 -14.849 -3.479 3.912 -12.101 -2.003 -10.140 -12.216 -12.206 -13.868 ML 256 254 6 259 6 1 1 27 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 27 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 24 47 -14.715 -13.414 -9.211 -9.893 -9.910 -0.006 IL 259 259 5 259 6 1 1 28 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 88 G C = = MP 261 260 6 265 4 2 2 26 50 -15.087 -15.294 -0.180 -3.091 -13.567 -3.972 -15.142 -0.863 -15.307 -11.668 -1.761 -14.882 -11.781 3.903 -12.000 -2.896 -10.047 -12.104 -12.115 -13.960 ML 262 260 6 265 4 1 1 25 48 -6.318 -6.500 -1.800 -0.537 -0.064 -2.532 1.390 -2.004 MR 263 260 6 265 4 1 1 26 49 -6.074 -5.103 -0.491 -2.031 -0.801 1.226 -1.571 -0.414 D 264 260 6 265 4 0 0 24 47 -11.829 -11.510 -2.431 -0.297 IL 265 265 5 265 4 1 1 28 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 1 24 48 -5.374 -0.038 -9.003 -1.854 -3.922 -3.300 1.830 D 268 266 6 269 3 0 0 23 47 -15.051 -0.176 -3.125 IL 269 269 3 269 3 1 1 24 48 -5.270 -0.044 -7.970 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 23 47 -16.096 -0.003 -8.831 -3.215 -2.779 -1.177 1.724 D 271 269 3 272 3 0 0 22 45 -12.041 -0.301 -2.410 IL 272 272 3 272 3 1 1 25 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - U - + - ML 273 272 3 275 3 1 1 22 46 -16.118 -0.000 -14.772 0.014 -0.180 -3.352 1.007 D 274 272 3 275 3 0 0 20 44 -10.254 -3.151 -0.174 IL 275 275 3 275 3 1 1 24 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 21 45 -5.089 -0.094 -4.880 1.353 -4.158 0.277 -2.487 D 277 275 3 278 3 0 0 20 44 -10.111 -0.066 -4.503 IL 278 278 3 278 3 1 1 21 45 -5.795 -0.030 -8.495 0.000 0.000 0.000 0.000 [ MATL 72 ] 82 - A - + - ML 279 278 3 281 3 1 1 20 44 -16.078 -0.039 -5.234 1.852 -2.883 -3.855 -2.426 D 280 278 3 281 3 0 0 15 39 -12.672 -4.602 -0.061 IL 281 281 3 281 3 1 1 22 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 83 - G - + - ML 282 281 3 284 3 1 1 19 43 -4.045 -0.140 -4.965 -0.602 -1.948 1.044 0.028 D 283 281 3 284 3 0 0 10 33 -13.450 -3.320 -0.152 IL 284 284 3 284 3 1 1 22 45 -1.141 -0.874 -10.284 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.098 -0.713 -3.823 1.626 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Tyr-2nd-align LENG 90 MAXL 168 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:14:00 2015 COM [1] cmbuild --hand --enone Tyr-final-vert.cm ../Tyr-2nd-align.sto NSEQ 1085 EFFN 7.090015 CKSUM 2768569377 STATS LOCAL MSV -9.0656 0.71869 STATS LOCAL VITERBI -9.5156 0.71869 STATS LOCAL FORWARD -3.5354 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39706 1.56758 1.27889 1.32507 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 0.00000 * 1 3.02829 4.29453 0.08040 4.18592 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 2 2.12484 3.01440 0.27176 2.66740 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 3 3.06798 2.33625 2.93443 0.21861 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 4 0.06101 4.87549 3.22562 4.43737 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 5 0.98261 2.59171 0.77516 2.40632 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 6 1.28431 2.62796 0.60418 2.25942 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 7 0.56278 3.23385 1.08198 2.95563 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 8 3.22972 3.07575 3.58220 0.12052 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 9 2.88261 4.37917 0.09120 3.98251 9 G + - , 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 10 2.17462 3.10039 0.24344 2.85786 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 11 4.28871 0.10559 4.16910 2.64483 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 12 2.99824 1.04978 2.76601 0.62139 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 13 2.81939 2.87068 0.18717 2.91151 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 14 0.03649 4.62882 4.25477 4.43375 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 15 1.75006 2.86798 0.42765 2.14232 15 G + - _ 1.38629 1.38629 1.38629 1.38629 0.39447 4.59203 1.15255 1.46634 0.26236 1.09861 0.40547 16 1.48653 1.75014 1.97792 0.77276 16 u + - _ 1.38629 1.38629 1.38629 1.38629 1.06941 4.22718 0.44286 1.46634 0.26236 3.50167 0.03061 17 1.37179 1.70000 1.62053 1.00547 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.24365 3.23939 1.73130 1.46634 0.26236 0.58607 0.81308 18 1.52860 2.56497 0.55263 2.03407 18 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03206 4.14936 4.14936 1.46634 0.26236 3.03050 0.04950 19 1.42382 1.78829 1.68392 0.90062 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.18269 4.16267 1.88777 1.46634 0.26236 3.57308 0.02847 20 1.76018 1.90031 2.21680 0.56298 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13288 2.24023 4.01759 0.70959 0.67697 0.04433 3.13826 21 1.52176 2.03173 2.21071 0.61444 24 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 22 0.29244 2.86343 2.53204 2.14563 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 23 0.82552 2.93823 0.80818 2.75881 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 24 3.03637 4.29318 0.08263 4.03776 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 25 3.17174 0.35840 2.89650 1.58933 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 26 1.23711 2.95882 0.52410 2.72100 29 G + - , 1.38629 1.38629 1.38629 1.38629 0.03247 3.82517 4.59203 0.76123 0.62941 1.09861 0.40547 27 1.78868 1.70745 1.12053 1.12275 31 g = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 28 2.06577 1.40991 2.00962 0.70305 32 u = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 29 1.10123 3.22848 0.54356 3.05238 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 30 2.16656 3.80909 0.17707 3.66746 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 31 1.11129 2.43294 0.74848 2.20725 35 g = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 32 2.76610 0.80844 3.39914 0.78058 36 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 33 3.65772 3.28814 4.18421 0.08159 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 34 3.99413 5.01105 0.03681 4.50523 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 35 3.95856 3.72977 4.50712 0.05564 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 36 0.03649 4.62882 4.25477 4.43375 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 37 0.95665 3.40986 0.62220 3.07885 41 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 38 1.00941 1.07141 2.61941 1.51325 42 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 39 2.48387 0.73301 2.27816 1.09768 43 c = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 40 3.87749 0.20679 3.63672 1.96776 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 41 3.30317 0.61303 3.03384 0.98512 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 42 0.91238 2.16940 1.20899 1.68369 46 a = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 43 1.22670 1.69147 1.50155 1.20494 47 u = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 44 0.86415 2.13834 1.65839 1.30824 48 a + - , 1.38629 1.38629 1.38629 1.38629 0.02332 4.59203 4.34894 1.46634 0.26236 1.09861 0.40547 45 1.46488 1.84498 1.23250 1.14161 49 u + - , 1.38629 1.38629 1.38629 1.38629 1.59351 4.58924 0.24000 1.46634 0.26236 1.18638 0.36431 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 47 1.80298 1.30594 1.07730 1.49718 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 48 1.80061 1.30667 1.07818 1.49670 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 49 1.79954 1.30700 1.07858 1.49649 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 50 1.79912 1.30712 1.07874 1.49640 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 51 1.79902 1.30716 1.07878 1.49638 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 52 1.79907 1.30714 1.07876 1.49639 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 57 1.73033 1.22018 1.16208 1.53823 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 58 1.73024 1.22021 1.16211 1.53821 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 59 1.73024 1.22021 1.16211 1.53821 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 60 1.73039 1.22015 1.16205 1.53825 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 61 1.73082 1.21997 1.16190 1.53838 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 62 1.73173 1.21958 1.16157 1.53865 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02542 3.68506 64 0.06207 4.15648 3.77525 3.83578 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.03832 3.59478 4.59203 0.62352 0.76798 1.09861 0.40547 65 2.47207 0.51101 2.69415 1.39393 70 C + - , 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 66 0.37284 3.91208 1.32905 3.63068 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 67 1.70545 2.66189 0.40916 2.47358 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 68 0.62161 3.01657 1.04600 2.77083 73 A = - < 1.38629 1.38629 1.38629 1.38629 0.04051 4.59203 3.52111 1.46634 0.26236 1.09861 0.40547 69 2.68587 3.92364 0.11688 3.79982 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.06875 4.57241 2.88055 1.46634 0.26236 1.59292 0.22732 70 2.53875 3.35244 0.15567 3.50019 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.12048 4.52555 2.27615 1.46634 0.26236 1.43219 0.27284 71 2.25604 2.56930 2.88257 0.27095 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04377 3.51796 4.33001 0.66353 0.72367 0.24009 1.54437 72 2.38781 2.44567 2.28223 0.32928 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02254 4.57504 4.42464 1.46634 0.26236 0.67920 0.70729 73 1.34208 1.51535 2.35269 0.85836 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02057 4.58735 4.58735 1.46634 0.26236 1.19644 0.35992 74 0.59750 2.66069 1.33025 2.15844 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07208 3.41113 3.30927 0.53259 0.88451 0.88106 0.53502 75 0.23089 2.70982 2.89228 2.47487 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04219 4.56542 3.47672 1.46634 0.26236 1.62689 0.21883 76 1.49439 2.11779 0.92843 1.34653 83 g + - _ 1.38629 1.38629 1.38629 1.38629 0.09684 2.86248 3.34747 0.75840 0.63189 1.64471 0.21452 77 2.17165 1.82358 2.81819 0.40819 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.08795 4.52567 2.61235 1.46634 0.26236 0.36047 1.19518 78 3.71801 0.18047 3.22393 2.29221 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.02196 4.52280 4.52280 1.46634 0.26236 0.52438 0.89629 79 3.85393 0.14824 3.75986 2.37204 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02245 4.57241 4.43372 1.46634 0.26236 0.52199 0.89977 80 2.99874 1.27156 2.81660 0.49438 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59052 4.59052 1.46634 0.26236 1.14701 0.38212 81 2.79572 0.48851 2.46456 1.42569 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.03043 3.92063 4.59052 0.82723 0.57494 1.14701 0.38212 82 3.83871 1.59335 3.69404 0.28720 93 U = - > 1.38629 1.38629 1.38629 1.38629 0.02638 4.59052 4.14196 1.46634 0.26236 1.00833 0.45386 83 3.26924 1.49165 2.96661 0.37763 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02059 4.58628 4.58628 1.46634 0.26236 0.82290 0.57831 84 2.64551 0.71287 2.27304 1.09124 95 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 85 2.68469 0.94486 2.34221 0.80540 96 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 86 4.77356 3.51716 4.70071 0.04837 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 87 0.28568 3.05782 1.97319 2.77272 98 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 88 2.95108 0.65972 2.82643 0.99021 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02089 4.59203 4.55269 1.46634 0.26236 1.09861 0.40547 89 4.40434 0.09717 4.22531 2.72188 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.15934 4.59162 1.98660 1.46634 0.26236 1.11190 0.39889 90 0.08280 3.73773 3.66038 3.50888 101 A + - : 1.38629 1.38629 1.38629 1.38629 0.01182 4.44410 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Tyr.cm0000644000543100007160000017242012573631164021447 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Tyr STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:29 2015 COM [1] cmbuild --hand --enone Tyr_model.cm aligntRNAdb-Tyr.sto COM [2] cmcalibrate --seed 208 Tyr_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3141745492 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.8300 0.71876 ECMLC 0.70535 -6.90224 1.66420 1600000 505032 0.002376 ECMGC 0.35170 -47.23962 -33.34253 1600000 53053 0.007540 ECMLI 0.63232 -7.82202 1.66579 1600000 483781 0.002480 ECMGI 0.36618 -43.31075 -30.12237 1600000 50053 0.007992 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -13.075 -14.320 -0.152 -3.323 IL 1 1 2 1 4 19 42 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 44 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 21 45 97 116 -12.975 -0.001 -12.791 -13.003 -13.894 1.999 -10.040 -9.275 -9.381 D 4 2 3 5 5 17 38 96 115 -10.416 -0.017 -8.043 -9.474 -7.468 IR 5 5 3 5 5 16 36 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 G C = = MP 6 5 3 10 6 22 45 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.835 -8.641 -13.551 -1.554 -13.557 -9.863 -7.936 -13.240 -9.998 3.958 -10.211 -3.335 -8.276 -10.307 -10.350 -12.400 ML 7 5 3 10 6 14 35 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 35 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 31 92 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 36 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 36 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 G C = = MP 12 11 6 16 6 22 43 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.580 -8.651 -12.777 -0.751 -13.422 -9.977 -7.932 -12.620 -9.985 3.837 -10.234 0.140 -8.231 -10.379 -10.285 -11.505 ML 13 11 6 16 6 14 34 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 34 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 31 90 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 35 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 36 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 U A = = MP 18 17 6 22 6 21 41 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -1.923 -9.692 -10.530 -7.599 -10.650 -9.794 3.694 -10.943 1.470 -9.332 ML 19 17 6 22 6 14 34 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 34 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 31 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 35 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 35 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 A U = = MP 24 23 6 28 6 19 39 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.294 3.967 -12.418 -13.580 -7.879 -10.336 -9.855 -1.613 -10.524 -6.046 -7.812 -11.598 -9.711 -8.893 ML 25 23 6 28 6 14 34 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 34 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 30 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 14 35 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 35 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 A U = = MP 30 29 6 34 6 17 37 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.864 -12.435 -13.590 -7.893 -10.336 -9.854 -0.508 -10.524 -0.483 -7.817 -11.599 -9.723 -8.892 ML 31 29 6 34 6 13 33 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 33 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 30 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 34 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 34 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 90 A U = = MP 36 35 6 40 6 15 35 86 105 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.294 3.781 -12.411 -13.572 -7.872 -10.335 -9.855 -0.226 -10.524 0.027 -3.188 -11.597 -2.480 -3.674 ML 37 35 6 40 6 13 33 85 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 32 85 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 30 83 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 33 86 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 33 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 89 A U = = MP 42 41 6 46 4 13 33 84 103 -13.280 -5.448 -0.034 -11.901 -10.099 -8.759 -10.294 3.879 -12.435 -13.590 -7.893 -10.336 -9.854 -0.868 -10.524 -0.479 -7.817 -11.599 -9.723 -8.892 ML 43 41 6 46 4 12 32 84 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 31 84 103 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 30 83 102 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 32 85 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 32 83 103 -3.753 -0.129 -6.453 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 31 82 101 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 10 29 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 31 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - + - ML 51 50 3 53 2 10 30 81 100 -14.843 -0.000 -8.727 -10.497 1.998 -9.485 D 52 50 3 53 2 9 29 80 99 -8.445 -0.004 IL 53 53 3 53 2 11 30 82 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 29 80 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.678 -8.647 -13.042 -2.012 -13.475 -9.930 -7.934 -12.839 -9.990 3.850 -10.225 0.396 -8.249 -10.350 -10.311 -11.803 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.947 -9.692 -10.530 -7.600 -10.650 -9.795 -2.005 -10.943 -1.678 -9.332 ML 65 63 6 68 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.426 -7.627 -2.289 -10.571 1.568 -9.692 -10.530 -7.599 -10.650 -9.795 3.401 -10.943 1.169 -9.332 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 G A = = MP 76 75 6 80 4 2 2 18 36 -13.280 -13.487 -0.001 -11.901 -10.107 -8.773 -10.296 -5.086 -12.245 -13.471 -7.735 -10.327 3.836 -5.434 -0.124 -0.442 -7.750 -11.589 -9.583 -8.897 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 16 34 -14.190 -0.175 -3.127 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - + - ML 85 84 3 87 3 1 1 15 33 -14.015 -0.955 -1.047 -3.513 -3.857 1.596 -0.286 D 86 84 3 87 3 0 0 13 31 -12.498 -8.011 -0.006 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - u - + - ML 88 87 3 90 3 1 1 14 33 -13.061 -3.646 -0.120 0.676 -1.842 -2.937 0.995 D 89 87 3 90 3 0 0 12 31 -14.731 -10.244 -0.001 IL 90 90 3 90 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 15 34 -9.422 -2.526 -0.278 -4.047 -3.686 -4.845 1.936 D 92 90 3 93 3 0 0 12 30 -15.557 -2.442 -0.293 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - G - + - ML 94 93 3 96 3 1 1 14 32 -11.745 -0.001 -10.400 0.192 -6.207 1.499 -5.837 D 95 93 3 96 3 0 0 10 28 -15.319 -6.121 -0.021 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - A - + - ML 97 96 3 99 3 1 1 12 31 -11.832 -1.501 -0.629 1.020 -6.541 0.963 -6.389 D 98 96 3 99 3 0 0 9 27 -15.299 -10.812 -0.001 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 12 -0.611 -1.542 -8.988 -5.450 -4.969 -6.292 1.975 D 101 99 3 102 3 0 0 5 10 -5.921 -0.026 -9.900 IL 102 102 3 102 3 1 1 6 12 -4.968 -0.054 -7.668 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.485 -3.586 -1.830 1.161 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.920 -9.521 -2.237 -9.190 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -1.437 -11.383 -10.427 -7.620 -1.162 -10.572 -4.491 -9.693 -3.445 -7.594 -10.650 -9.776 3.896 -10.944 -2.796 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.104 -11.364 -10.427 -7.603 -8.782 -10.576 -4.495 -9.695 -10.527 -7.582 -10.650 -9.732 3.955 -10.945 -1.218 -9.324 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.751 -12.435 -13.590 -7.893 -10.336 -9.854 0.888 -10.524 -0.590 -7.817 -11.599 -9.723 -8.892 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.601 -4.407 -12.831 0.588 -13.431 -9.965 -7.929 -12.667 -9.986 3.841 -10.231 -3.180 -8.233 -10.371 -10.288 -11.567 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 -8.759 -10.294 3.859 -12.435 -13.590 -7.893 -10.336 -9.854 -0.457 -10.524 -0.435 -7.817 -11.599 -9.723 -8.892 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.301 1.983 -9.703 -4.529 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - + - ML 166 165 2 168 3 1 5 49 68 -14.190 -0.005 -8.098 1.344 -2.167 0.065 -2.368 D 167 165 2 168 3 0 3 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 4 48 67 -14.838 -0.000 -0.647 -0.994 1.229 -0.956 D 170 168 3 171 2 0 3 47 66 -8.643 -0.004 IL 171 171 3 171 2 1 4 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 29 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 4 29 47 -4.238 -0.079 -12.844 1.999 -10.184 -9.419 -9.524 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 29 47 -4.793 -0.061 -7.493 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - C - + - ML 234 233 3 236 5 1 4 28 46 -13.126 -0.001 -12.941 -13.153 -14.045 -2.802 1.520 -3.836 -0.122 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 87 A U = = MP 237 236 3 241 6 2 4 27 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.589 -12.435 -13.583 -7.892 -10.337 -9.854 1.794 -10.524 -1.054 -7.817 -11.598 -9.723 -8.893 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 86 G C = = MP 243 242 6 247 6 2 4 25 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.408 -4.695 -12.369 0.505 -13.311 -10.067 -7.915 -12.276 -9.974 3.771 -10.250 -0.185 -8.186 -10.430 -10.223 -11.063 ML 244 242 6 247 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 85 A U = = MP 249 248 6 253 6 2 4 23 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.098 -1.871 -10.293 3.380 -12.432 -13.564 -7.888 -10.336 -9.853 1.943 -10.522 0.541 -7.814 -11.592 -9.719 -8.892 ML 250 248 6 253 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 84 G C = = MP 255 254 6 259 6 2 2 21 39 -14.078 -14.017 -0.083 -8.480 -7.562 -4.384 -11.607 -8.649 -12.845 -0.068 -13.436 -9.964 -7.932 -12.677 -9.986 3.866 -10.232 -1.148 -8.236 -10.371 -10.292 -11.581 ML 256 254 6 259 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 83 G C = = MP 261 260 6 265 4 2 2 18 37 -13.195 -13.402 -0.485 -1.809 -10.664 -1.216 -11.053 0.653 -12.159 -9.877 -2.135 -11.344 -9.720 3.722 -10.005 -0.835 -7.278 -9.981 -9.168 -9.880 ML 262 260 6 265 4 1 1 23 41 -4.627 -4.809 -1.375 -0.893 -0.501 -1.511 1.268 -0.905 MR 263 260 6 265 4 1 1 22 40 -6.469 -5.498 -0.358 -2.426 -1.327 1.490 -2.133 -0.826 D 264 260 6 265 4 0 0 19 37 -9.196 -8.878 -3.614 -0.129 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - U - + - ML 267 266 6 269 3 1 1 15 33 -4.287 -0.076 -12.296 -1.200 -1.782 -1.287 1.518 D 268 266 6 269 3 0 0 14 32 -13.955 -0.031 -5.562 IL 269 269 3 269 3 1 1 15 33 -4.265 -0.089 -6.965 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 32 -14.182 -0.000 -12.836 -1.416 -2.380 -1.057 1.562 D 271 269 3 272 3 0 0 16 34 -8.490 -0.215 -2.882 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - u - + - ML 273 272 3 275 3 1 1 13 31 -14.190 -0.015 -6.583 0.490 -1.519 -1.612 0.941 D 274 272 3 275 3 0 0 16 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - a - + - ML 276 275 3 278 3 1 1 11 29 -3.919 -0.161 -4.663 0.935 -2.917 0.726 -1.734 D 277 275 3 278 3 0 0 10 28 -9.197 -0.128 -3.588 IL 278 278 3 278 3 1 1 11 29 -5.070 -0.050 -7.770 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.133 -0.172 -3.153 1.691 -2.147 -1.478 -2.417 D 280 278 3 281 3 0 0 11 29 -10.978 -6.491 -0.017 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - G - + - ML 282 281 3 284 3 1 1 7 14 -4.812 -0.209 -3.329 -0.152 -1.256 1.013 -0.592 D 283 281 3 284 3 0 0 4 11 -12.855 -3.982 -0.095 IL 284 284 3 284 3 1 1 7 14 -4.090 -0.101 -6.790 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.677 0.068 -2.282 1.283 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Tyr LENG 90 MAXL 174 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:30 2015 COM [1] cmbuild --hand --enone Tyr_model.cm aligntRNAdb-Tyr.sto NSEQ 282 EFFN 3.610199 CKSUM 3141745492 STATS LOCAL MSV -9.1222 0.71876 STATS LOCAL VITERBI -9.7200 0.71876 STATS LOCAL FORWARD -3.5589 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23585 1.61140 1.39430 1.34018 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 0.00000 * 1 2.65713 3.62056 0.13566 3.50856 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 2 2.33312 3.29722 0.19413 3.15899 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 3 2.89609 1.68628 2.69001 0.36864 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 4 0.21557 3.40917 2.09842 3.26485 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 5 0.33135 3.29335 1.61548 3.07640 5 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 6 0.55020 2.57283 1.38075 2.34910 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 7 0.30848 3.34466 1.68085 3.12465 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 8 3.11410 2.99544 3.64725 0.12840 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 9 3.22007 4.15892 0.08307 3.72406 9 G + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 10 2.49197 3.40220 0.16712 3.27391 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 11 3.48058 0.20825 3.28973 2.12074 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 12 2.52438 1.23415 2.31095 0.63556 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 13 2.11048 2.59554 0.32983 2.46309 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 14 0.08847 3.76540 3.44171 3.52340 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11326 4.19774 2.38541 1.46634 0.26236 1.09861 0.40547 15 1.85552 2.38335 0.59803 1.60201 15 G + - _ 1.38629 1.38629 1.38629 1.38629 0.42371 4.11759 1.11138 1.46634 0.26236 2.09491 0.13134 16 1.14265 1.77841 1.99052 0.97951 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.68132 3.74243 0.75427 1.46634 0.26236 3.30818 0.03727 17 1.30465 1.64576 1.71271 1.03425 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.15492 3.15065 2.29569 1.46634 0.26236 1.64209 0.21514 18 1.19149 2.08203 0.96134 1.66507 18 g + - _ 1.38629 1.38629 1.38629 1.38629 0.06914 3.39920 3.39920 1.46634 0.26236 3.26895 0.03879 19 0.98352 2.04238 1.20229 1.63076 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.28914 3.41598 1.52212 1.46634 0.26236 3.14180 0.04417 20 1.42488 1.68494 1.84499 0.87712 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.17182 2.13168 3.23831 0.56654 0.83814 0.04647 3.09207 21 1.17272 2.03351 2.00898 0.85455 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 22 0.54962 2.19283 2.08959 1.67401 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 23 0.83461 2.48161 0.96297 2.29668 24 a = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 24 2.45482 3.43616 0.17163 3.22785 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 25 3.45446 0.23769 3.21011 1.96899 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 26 0.18848 3.21886 2.52556 2.96104 27 A + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 27 3.10884 2.54275 2.99015 0.19066 28 U = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 28 3.59302 2.29742 3.39450 0.17625 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 29 0.48538 3.03853 1.27829 2.84526 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 30 2.13051 3.27275 0.22304 3.14111 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 31 0.33691 3.28714 1.59791 3.07152 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 32 3.35376 0.12855 3.91663 2.72156 33 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 33 3.11410 2.99544 3.64725 0.12840 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 34 3.22007 4.15892 0.08307 3.72406 35 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 35 3.11410 2.99544 3.64725 0.12840 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 36 0.08847 3.76540 3.44171 3.52340 37 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 37 0.08847 3.76540 3.44171 3.52340 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 38 0.08847 3.76540 3.44171 3.52340 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 39 3.27683 1.98755 3.07978 0.24942 40 U = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 40 3.36246 0.25997 3.09556 1.90362 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 41 3.06212 1.55201 2.83564 0.38169 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 42 0.21158 3.56207 2.06367 3.34306 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 43 0.20529 3.17361 2.39060 2.95339 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 44 0.72715 2.11824 1.48508 1.77202 45 a + - , 1.38629 1.38629 1.38629 1.38629 0.03296 4.19774 4.05144 1.46634 0.26236 1.09861 0.40547 45 1.45084 1.89685 0.90433 1.55698 46 g + - , 1.38629 1.38629 1.38629 1.38629 1.19964 4.19537 0.38034 1.46634 0.26236 1.14979 0.38082 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 47 1.80327 1.30585 1.07719 1.49724 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 48 1.80107 1.30653 1.07801 1.49679 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 49 1.80012 1.30682 1.07837 1.49660 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 50 1.79977 1.30692 1.07849 1.49653 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 51 1.79972 1.30694 1.07851 1.49652 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 52 1.79982 1.30691 1.07848 1.49654 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 57 1.73103 1.21988 1.16182 1.53844 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 58 1.73090 1.21993 1.16187 1.53840 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 59 1.73084 1.21996 1.16189 1.53838 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 60 1.73091 1.21993 1.16187 1.53841 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 61 1.73123 1.21979 1.16175 1.53850 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 62 1.73198 1.21947 1.16148 1.53872 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04298 3.16834 64 0.08847 3.76540 3.44171 3.52340 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.06800 2.98166 4.19774 0.51433 0.91106 1.09861 0.40547 65 1.99374 0.65713 2.59640 1.30587 67 C + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 66 0.65927 2.87255 1.02444 2.69977 68 A = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 67 2.04026 3.09929 0.25745 2.95845 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 68 0.88059 2.61509 0.85352 2.44891 70 g = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 69 2.29314 3.35595 0.19303 3.22602 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.06876 4.19774 2.96771 1.46634 0.26236 1.09861 0.40547 70 1.80736 2.65711 0.37156 2.57566 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.24960 4.16067 1.58335 1.46634 0.26236 1.35156 0.29953 71 1.58877 1.85044 1.99115 0.68892 73 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07058 3.01503 3.95806 0.65368 0.73423 0.14090 2.02935 72 1.69819 2.01405 2.00199 0.60062 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03064 4.19386 4.19386 1.46634 0.26236 0.95168 0.48791 73 1.15827 1.83497 1.95068 0.95666 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03770 4.19774 3.81825 1.46634 0.26236 1.09861 0.40547 74 0.94030 2.17416 1.16475 1.69400 77 a + - _ 1.38629 1.38629 1.38629 1.38629 0.10652 2.82170 3.18112 0.44871 1.01735 0.86222 0.54857 75 0.49716 2.19225 2.02390 1.91094 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11153 4.17117 2.40679 1.46634 0.26236 1.55702 0.23669 76 1.31309 1.88722 1.07353 1.43666 80 g + - _ 1.38629 1.38629 1.38629 1.38629 0.12714 3.23540 2.52512 0.70360 0.68280 1.92311 0.15800 77 1.66092 1.45867 2.16023 0.77178 82 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07706 4.03521 2.87378 1.46634 0.26236 0.17756 1.81589 78 2.81929 0.43114 2.47899 1.57621 83 C = - > 1.38629 1.38629 1.38629 1.38629 0.03163 4.16246 4.16246 1.46634 0.26236 0.47305 0.97577 79 3.43924 0.23843 3.18027 1.97708 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 80 2.68802 1.04298 2.41871 0.71224 85 u = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 81 3.19075 0.32408 2.91513 1.70666 86 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 82 2.92402 1.20540 2.67219 0.54886 87 U = - > 1.38629 1.38629 1.38629 1.38629 0.04649 3.49347 4.19774 0.80324 0.59398 1.09861 0.40547 83 3.32373 2.09158 3.13662 0.22682 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 84 2.63644 1.66276 2.33813 0.44276 90 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 85 3.27870 2.00454 3.08697 0.24595 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 86 3.47577 2.41150 3.21328 0.17536 92 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 87 0.56165 2.85812 1.19369 2.66997 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 88 3.38905 0.25704 3.13192 1.90186 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 89 3.73907 0.15863 3.49583 2.37963 95 C = - ) 1.38629 1.38629 1.38629 1.38629 0.10203 4.19774 2.50138 1.46634 0.26236 1.09861 0.40547 90 0.10177 3.63229 3.31976 3.37702 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01651 4.11221 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Ile.cm0000644000543100007160000017244012573631164021404 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Ile STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:53:50 2015 COM [1] cmbuild --hand --enone Ile_model.cm aligntRNAdb-Ile.sto COM [2] cmcalibrate --seed 208 Ile_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3863379960 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.2093 0.71877 ECMLC 0.48493 -11.25528 2.11163 1600000 783916 0.001531 ECMGC 0.31402 -51.01420 -34.87057 1600000 63635 0.006286 ECMLI 0.49664 -10.67094 2.31789 1600000 759867 0.001579 ECMGI 0.33525 -46.08676 -31.20653 1600000 58691 0.006815 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 38 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 39 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 21 47 97 116 -13.126 -0.001 -12.941 -13.153 -14.045 1.810 -9.099 -1.032 -8.971 D 4 2 3 5 5 12 34 96 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 38 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 A U = = MP 6 5 3 10 6 22 46 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.961 -12.429 -13.586 -7.888 -10.336 -9.854 -5.420 -10.524 -1.376 -7.816 -11.599 -9.719 -8.892 ML 7 5 3 10 6 14 36 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 36 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 32 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 37 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 37 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 G C = = MP 12 11 6 16 6 21 44 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 13 11 6 16 6 14 36 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 36 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 32 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 37 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 37 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 A U = = MP 18 17 6 22 6 20 43 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.290 3.973 -12.417 -13.578 -7.878 -10.331 -9.855 -1.949 -10.524 -6.046 -7.812 -11.598 -9.710 -8.891 ML 19 17 6 22 6 13 35 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 35 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 32 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 36 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 37 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 A U = = MP 24 23 6 28 6 18 41 90 109 -3.139 -14.017 -0.174 -12.794 -13.073 -13.468 -2.077 -8.759 -10.294 3.958 -12.432 -13.588 -7.890 -10.336 -9.854 -5.420 -10.524 -2.451 -7.816 -11.599 -9.721 -8.892 ML 25 23 6 28 6 13 35 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 35 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 32 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 39 89 108 -7.745 -8.008 -0.017 -9.663 -10.440 -10.100 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 36 90 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 91 A U = = MP 30 29 6 34 6 16 39 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 31 29 6 34 6 13 35 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 34 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 32 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 36 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 36 88 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 90 U A = = MP 36 35 6 40 6 14 37 86 105 -3.139 -14.017 -0.174 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 0.890 -10.571 -0.319 -9.692 -10.530 -7.600 -10.650 -9.796 3.707 -10.943 -1.891 -9.332 ML 37 35 6 40 6 12 34 86 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 33 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 31 84 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 36 85 104 -7.745 -8.008 -0.017 -9.663 -10.440 -10.100 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 35 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 89 A U = = MP 42 41 6 46 4 12 35 84 103 -13.280 -13.487 -0.001 -11.901 -10.100 -8.760 -10.290 3.974 -12.417 -13.578 -7.878 -10.331 -9.855 -1.966 -10.524 -6.046 -7.812 -11.598 -9.710 -8.891 ML 43 41 6 46 4 11 33 85 104 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 32 85 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 31 83 103 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 34 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 34 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 10 33 82 101 -14.190 -0.000 -12.844 -9.745 -4.371 -10.641 1.982 D 49 47 6 50 3 9 31 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 33 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - G - + - ML 51 50 3 53 2 9 32 81 100 -14.843 -0.000 -8.771 -10.361 1.824 -1.135 D 52 50 3 53 2 8 31 80 99 -8.445 -0.004 IL 53 53 3 53 2 10 32 82 101 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 31 80 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 12 28 U A = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 59 57 1 62 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 C G = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 3.817 -9.693 -10.530 -7.599 -10.650 -9.793 -5.510 -10.943 0.897 -9.332 ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -2.165 -10.571 -2.085 -9.693 -10.530 -7.599 -10.650 -9.793 3.955 -10.943 -6.480 -9.332 ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 G A = = MP 76 75 6 80 4 2 2 18 36 -13.280 -13.487 -0.001 -11.901 -10.125 -8.802 -10.298 -5.114 -11.938 -13.266 -7.472 -10.308 3.762 -2.038 -10.528 -1.776 0.893 -11.570 -9.345 -8.906 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.190 -0.178 -3.111 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 16 34 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - C - + - ML 85 84 3 87 3 1 1 15 33 -14.013 -0.031 -5.562 -3.155 1.367 -4.650 0.343 D 86 84 3 87 3 0 0 13 31 -12.514 -8.027 -0.006 IL 87 87 3 87 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - A - + - ML 88 87 3 90 3 1 1 14 32 -13.982 -7.086 -0.011 1.872 -2.900 -4.062 -2.774 D 89 87 3 90 3 0 0 13 31 -12.727 -8.240 -0.005 IL 90 90 3 90 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - a - + - ML 91 90 3 93 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 92 90 3 93 3 0 0 10 29 -15.602 -11.115 -0.001 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - a - + - ML 94 93 3 96 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 95 93 3 96 3 0 0 10 28 -15.602 -5.156 -0.041 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - A - + - ML 97 96 3 99 3 1 1 13 32 -9.313 -2.416 -0.302 1.953 -4.850 -4.304 -4.566 D 98 96 3 99 3 0 0 8 26 -15.561 -11.074 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - a - + - ML 100 99 3 102 3 1 1 7 15 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 101 99 3 102 3 0 0 6 14 -5.781 -0.028 -9.993 IL 102 102 3 102 3 1 1 8 16 -3.492 -0.156 -6.192 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.235 -9.325 1.495 -8.999 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.063 -11.168 -10.422 -7.418 -8.821 -10.612 -4.532 -9.709 -10.503 -7.445 -10.646 -9.310 3.967 -1.816 -6.522 -9.314 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.156 -11.397 -10.491 -7.685 -8.844 -10.635 -4.583 -9.765 -10.518 -7.664 -10.714 -9.798 3.967 -10.913 -1.750 -8.487 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 C G = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.863 -9.692 -10.530 -7.600 -10.650 -9.795 0.360 -10.943 -2.799 -9.332 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.105 -2.101 -10.426 -7.605 -8.781 -10.575 0.524 -9.694 -10.528 -7.583 -10.650 -9.738 3.838 -10.945 -6.484 -9.331 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.982 -10.014 -4.370 -9.442 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -8.727 -10.497 1.998 -9.485 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 50 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 4 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 3 50 68 -14.190 -0.000 -12.844 1.983 -10.029 -4.522 -9.450 D 167 165 2 168 3 0 1 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - + - ML 169 168 3 171 2 1 2 49 67 -14.843 -0.000 -1.361 -2.036 -4.551 1.733 D 170 168 3 171 2 0 1 48 66 -8.445 -0.004 IL 171 171 3 171 2 1 2 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 48 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -3.101 -0.179 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.157 -0.002 -9.811 1.991 -7.269 -6.587 -6.748 D 217 215 6 218 3 0 0 9 28 -15.423 -10.936 -0.001 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - A - + - ML 219 218 3 221 3 1 1 13 31 -11.157 -0.002 -9.811 1.991 -7.269 -6.587 -6.748 D 220 218 3 221 3 0 0 8 27 -15.423 -10.936 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.157 -0.002 -9.811 -6.823 -6.181 -7.746 1.990 D 223 221 3 224 3 0 0 7 25 -15.423 -10.936 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.991 -7.269 -6.587 -6.748 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 29 48 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 1 29 48 -0.188 -3.035 -12.844 1.303 -1.077 -0.881 -0.953 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 28 47 -8.705 -0.004 -11.405 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -4.325 -8.536 -9.711 1.980 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 88 A U = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.294 3.796 -12.421 -13.581 -7.881 -10.336 -9.854 -2.147 -10.524 -6.046 -7.813 -11.599 -9.713 0.891 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 87 G C = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.892 -8.640 -13.771 -6.066 -13.585 -9.841 -7.937 -13.404 -10.000 3.822 -10.206 0.868 -8.285 -10.293 -10.363 -12.673 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 86 A U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.100 -0.117 -10.295 3.429 -12.435 -13.558 -7.891 -10.338 -9.854 2.064 -10.523 -3.198 -7.817 -11.594 -9.723 -8.894 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 73 85 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.917 -2.324 -13.877 -1.685 -13.598 -9.832 -7.937 -13.480 -10.001 3.951 -10.204 -6.553 -8.289 -10.287 -10.369 -12.807 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 74 84 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.025 -5.859 -11.913 0.928 -13.858 -6.074 -13.596 -9.833 -7.937 -13.466 -10.001 3.789 -10.205 -2.047 -8.288 -10.288 -10.368 -12.783 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 75 - U - + - ML 267 266 6 269 3 1 1 15 34 -4.996 -0.046 -12.820 -0.960 -1.573 -5.252 1.643 D 268 266 6 269 3 0 0 15 33 -9.844 -0.080 -4.236 IL 269 269 3 269 3 1 1 15 34 -4.107 -0.100 -6.807 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -3.667 -1.409 -1.580 1.683 D 271 269 3 272 3 0 0 17 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - u - + - ML 273 272 3 275 3 1 1 13 31 -14.190 -0.000 -12.844 -0.800 -0.057 -0.908 0.950 D 274 272 3 275 3 0 0 16 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - A - + - ML 276 275 3 278 3 1 1 12 30 -4.681 -0.243 -3.111 1.457 -1.974 -0.450 -1.904 D 277 275 3 278 3 0 0 10 29 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 12 30 -4.399 -0.081 -7.099 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 11 29 -14.013 -0.000 -12.667 1.980 -9.816 -4.243 -9.258 D 280 278 3 281 3 0 0 10 29 -12.514 -8.027 -0.006 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - A - + - ML 282 281 3 284 3 1 1 9 27 -14.013 -0.036 -5.354 1.355 -3.469 0.402 -5.007 D 283 281 3 284 3 0 0 9 27 -12.514 -8.027 -0.006 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 83 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -6.535 1.367 -4.897 0.461 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Ile LENG 90 MAXL 178 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:53:50 2015 COM [1] cmbuild --hand --enone Ile_model.cm aligntRNAdb-Ile.sto NSEQ 282 EFFN 2.904510 CKSUM 3863379960 STATS LOCAL MSV -9.0096 0.71877 STATS LOCAL VITERBI -9.7568 0.71877 STATS LOCAL FORWARD -2.9611 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17294 1.74811 1.51257 1.21706 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 0.00000 * 1 0.27598 3.20433 1.88175 3.03105 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 2 2.74703 3.49014 0.13596 3.42629 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 3 0.28004 3.07220 1.92255 2.96244 3 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 4 0.24928 3.12412 2.07487 2.97415 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.11247 2.42444 4.02600 0.36361 1.18797 1.09861 0.40547 5 0.25197 3.08641 2.06060 3.00199 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 6 2.48502 1.29315 2.29828 0.61278 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.11247 2.42444 4.02600 0.36361 1.18797 1.09861 0.40547 7 0.28071 3.06693 1.92322 2.95552 9 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 8 2.70590 2.57303 3.22600 0.20191 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 9 2.25977 2.90704 0.32428 2.13755 11 G + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 10 3.28403 2.13251 3.05841 0.22687 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 11 2.95085 0.40603 2.73055 1.53139 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 12 3.14622 1.92344 2.93225 0.27759 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 13 2.15571 2.00139 0.57714 1.67382 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 14 0.11791 3.49355 3.19341 3.22393 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11247 4.02600 2.42444 1.46634 0.26236 1.09861 0.40547 15 1.84684 0.83979 2.42914 1.13211 17 c + - _ 1.38629 1.38629 1.38629 1.38629 0.05196 3.95270 3.46005 1.46634 0.26236 1.94030 0.15509 16 0.36036 2.41071 2.38829 2.11168 18 A + - _ 1.38629 1.38629 1.38629 1.38629 0.94467 3.94040 0.52467 1.46634 0.26236 2.02781 0.14113 17 1.13112 1.65303 1.51838 1.32128 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 18 1.13112 1.65303 1.51838 1.32128 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.94883 0.05382 19 0.92059 1.79726 1.59266 1.45851 21 a + - _ 1.38629 1.38629 1.38629 1.38629 0.13718 3.13292 2.46984 1.46634 0.26236 3.10411 0.04590 20 1.13112 1.65303 1.51838 1.32128 22 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09258 3.11881 3.11881 1.46634 0.26236 0.05648 2.90189 21 0.11791 3.49355 3.19341 3.22393 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 22 0.59116 2.07711 1.82334 1.83548 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 23 0.30964 3.09254 1.79472 2.90539 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 24 2.10864 2.88646 0.28013 2.70103 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 25 0.26006 3.23138 1.96657 3.00468 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 26 1.25339 2.71738 0.59740 2.32097 29 G + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 27 3.32186 2.48462 3.07052 0.18133 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 28 3.26740 2.05898 3.04250 0.24004 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 29 0.25048 3.09459 2.06244 3.01320 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 30 2.99161 0.36715 2.76499 1.63933 33 C = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 31 2.31716 1.45310 2.09021 0.60891 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 32 2.85113 2.77471 3.37714 0.16758 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 33 2.85113 2.77471 3.37714 0.16758 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 34 2.95695 3.86740 0.11086 3.44060 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 35 0.11791 3.49355 3.19341 3.22393 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 36 2.85113 2.77471 3.37714 0.16758 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 37 0.14699 3.32615 2.92091 3.06009 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 38 2.95695 3.86740 0.11086 3.44060 41 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 39 0.68768 2.21989 1.30764 2.13557 42 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 40 1.87575 2.92647 0.31584 2.74894 43 G = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 41 3.23887 2.38671 2.90369 0.20575 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 42 0.28143 3.21196 1.85622 3.02084 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 43 0.20622 3.17276 2.31428 3.08739 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 44 0.14434 3.33999 2.94220 3.07440 47 A + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 45 1.80595 1.98284 2.47580 0.48791 48 U + - , 1.38629 1.38629 1.38629 1.38629 1.03027 4.02600 0.46961 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 47 1.80341 1.30581 1.07714 1.49726 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 48 1.80128 1.30646 1.07793 1.49684 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 49 1.80037 1.30674 1.07827 1.49665 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 50 1.80006 1.30684 1.07839 1.49659 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 51 1.80003 1.30685 1.07840 1.49658 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 52 1.80014 1.30681 1.07836 1.49661 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.01034 0.14381 53 0.65986 2.02172 1.84534 1.64674 56 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08017 3.25659 3.25659 1.46634 0.26236 3.49880 0.03070 54 0.65986 2.02172 1.84534 1.64674 57 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08017 3.25659 3.25659 1.46634 0.26236 3.49880 0.03070 55 1.51519 1.73047 1.94484 0.77648 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08017 3.25659 3.25659 1.46634 0.26236 3.49880 0.03070 56 0.65986 2.02172 1.84534 1.64674 59 A + - _ 1.38629 1.38629 1.38629 1.38629 0.26086 3.25659 1.65502 1.46634 0.26236 3.49880 0.03070 57 1.73133 1.21975 1.16171 1.53853 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 58 1.73118 1.21981 1.16177 1.53849 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 59 1.73110 1.21985 1.16180 1.53846 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 60 1.73114 1.21983 1.16178 1.53847 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 61 1.73141 1.21971 1.16168 1.53855 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 62 1.73209 1.21942 1.16144 1.53875 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.05551 2.91876 64 0.80843 1.83352 1.78541 1.48340 67 a + - , 1.38629 1.38629 1.38629 1.38629 0.84958 0.58958 4.02600 0.06316 2.79349 1.09861 0.40547 65 2.50299 2.56035 3.08370 0.22930 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 66 0.43216 2.65644 1.81844 2.13353 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 67 2.41833 3.20131 0.19353 3.07532 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 68 0.91359 2.42272 0.90019 2.26582 72 g = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 69 2.42983 3.31209 0.18068 3.19892 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 70 2.00805 3.01482 0.27382 2.87842 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.04715 4.02600 3.56814 1.46634 0.26236 1.09861 0.40547 71 1.68622 1.88055 2.41484 0.55705 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05663 3.29607 4.01559 0.79281 0.60252 0.81769 0.58241 72 1.91572 1.88182 2.18877 0.53035 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 73 1.45645 1.50659 1.85024 0.94656 78 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 74 0.70216 2.03633 1.67791 1.67549 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.13947 3.17845 2.42444 0.71009 0.67649 1.09861 0.40547 75 0.17089 3.18497 2.80060 2.90162 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03916 3.95270 3.95270 1.46634 0.26236 1.94030 0.15509 76 0.70971 2.28943 1.33468 1.94038 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05398 3.95270 3.40095 1.46634 0.26236 1.94030 0.15509 77 1.94831 0.82124 2.48583 1.09559 83 c + - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93846 3.93846 1.46634 0.26236 0.30089 1.34770 78 3.10534 0.27560 2.83312 1.98599 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 79 3.40361 0.20835 3.14004 2.19333 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 80 2.50099 0.97248 2.22772 0.83915 86 u = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 81 3.28437 0.27649 3.02062 1.86225 87 C = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 82 2.75228 2.05398 2.46274 0.32463 88 U = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 83 3.17010 2.22168 2.87457 0.23176 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 84 0.62045 2.46645 1.29448 2.26939 90 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 85 3.22306 2.38433 2.89711 0.20723 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 86 3.09250 2.37042 2.93376 0.21323 92 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 87 3.18535 2.22163 2.88095 0.23052 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 88 3.63059 0.16086 3.33877 2.44635 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 89 3.25840 2.26915 3.01557 0.21179 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 90 0.32997 2.80093 1.99037 2.48104 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01834 4.00800 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/Dsignal0000644000543100007160000000034011021467303016161 0ustar pchanlowelab0.0000 0.0000 0.0000 1.0000 0.5100 0.0400 0.4200 0.0200 0.0000 0.0000 1.0000 0.0000 0.0400 0.6400 0.0500 0.2800 0.0500 0.2500 0.3000 0.4000 0.0900 0.4900 0.1300 0.2900 1.0000 0.0000 0.0000 0.0000 0.1800 0.0100 0.7500 0.0600 tRNAscan-SE-2.0/lib/models/TRNAinf-bact-SeC.cm0000644000543100007160000020177012712034725020036 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME bact-SeC-043016 STATES 304 NODES 77 CLEN 95 W 111 ALPH RNA RF yes CONS yes MAP yes DATE Sat Apr 30 15:16:09 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/bact-SeC-043016.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 59 EFFN 59.000000 CKSUM 3815334794 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4186 0.71863 ECMLC 0.76623 -6.89800 1.57419 1600000 791504 0.001516 ECMGC 0.34091 -49.28657 -35.94677 1600000 37763 0.010592 ECMLI 0.70546 -7.59235 1.57579 1600000 772822 0.001553 ECMGI 0.36343 -43.70338 -31.27906 1600000 36564 0.010940 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 111 129 -10.854 -12.100 -0.005 -8.553 IL 1 1 2 1 4 22 55 112 131 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 57 113 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 109 - A - * MR 3 2 3 5 3 28 61 111 129 -12.268 -0.001 -10.586 1.970 -4.008 -6.760 -6.653 D 4 2 3 5 3 18 50 109 128 -6.390 -1.568 -0.620 IR 5 5 3 5 3 23 56 112 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 108 - C - * MR 6 5 3 8 3 27 60 110 128 -12.268 -0.001 -10.586 -7.477 1.993 -7.951 -6.500 D 7 5 3 8 3 17 49 108 127 -6.390 -1.568 -0.620 IR 8 8 3 8 3 22 55 111 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 107 - C - * MR 9 8 3 11 3 27 59 109 127 -12.268 -0.001 -10.586 -7.477 1.993 -7.951 -6.500 D 10 8 3 11 3 17 48 107 126 -6.390 -1.568 -0.620 IR 11 11 3 11 3 22 55 110 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 106 - G - + MR 12 11 3 14 5 26 58 108 126 -10.914 -0.003 -10.730 -10.942 -11.834 -6.593 -8.359 1.993 -7.354 D 13 11 3 14 5 16 47 106 125 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 20 52 108 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 105 G C = = MP 15 14 3 19 6 26 58 107 125 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.653 -6.516 -11.223 -0.617 -11.382 -7.757 -5.798 -10.961 -7.868 3.929 -8.088 -4.403 -6.133 -8.193 -8.197 -10.039 ML 16 14 3 19 6 18 49 105 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 18 49 105 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 14 44 103 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 19 51 107 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 20 51 106 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 104 G C = = MP 21 20 6 25 6 26 56 105 123 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883 3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 ML 22 20 6 25 6 17 49 103 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 17 48 103 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 13 44 101 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 19 50 104 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 19 51 104 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 103 A U = = MP 27 26 6 31 6 24 54 103 121 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -7.805 -6.475 -7.943 3.398 -9.490 -10.295 -0.786 -8.013 -7.589 2.239 -8.210 -3.798 -5.131 -8.950 -6.845 -6.587 ML 28 26 6 31 6 17 48 101 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 17 48 101 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 13 43 99 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 18 50 102 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 19 50 102 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 102 A U = = MP 33 32 6 37 6 22 52 101 119 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -7.870 -6.531 -8.065 3.645 -10.203 -11.351 -5.660 -8.108 -7.626 0.964 -8.296 0.538 -5.587 -9.368 -7.491 -6.664 ML 34 32 6 37 6 17 47 99 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 16 47 99 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 13 43 97 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 18 49 101 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 18 49 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 101 G C = = MP 39 38 6 43 6 20 50 99 117 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.443 -6.509 -10.626 -0.355 -11.243 -7.827 -5.760 -10.498 -7.848 3.888 -8.093 -1.518 -6.063 -8.224 -8.109 -9.375 ML 40 38 6 43 6 16 47 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 16 46 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 12 42 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 17 48 99 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 18 48 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 100 u a = = MP 45 44 6 49 6 18 48 97 115 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.499 -6.143 -6.475 2.170 -5.387 -7.288 1.958 -6.027 -6.359 1.439 -6.852 -3.723 2.185 -6.667 -2.861 -5.085 ML 46 44 6 49 6 15 46 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 15 45 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 12 42 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 16 47 97 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 17 47 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 99 G C = = MP 51 50 6 55 6 16 46 95 113 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.129 -4.886 -5.967 1.372 -6.473 -6.585 1.057 -6.424 -6.313 3.156 -6.602 -2.521 0.772 -5.865 -1.453 -4.878 ML 52 50 6 55 6 14 45 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 14 44 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 12 42 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 15 45 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 15 45 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 98 c g = = MP 57 56 6 61 4 14 44 93 111 -11.053 -11.260 -0.023 -6.045 -4.199 -4.344 -4.372 1.743 -4.157 -5.222 2.289 -1.061 1.349 -0.330 -0.220 -2.795 0.533 -0.070 -2.182 -3.532 ML 58 56 6 61 4 13 43 95 113 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 13 43 94 113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 12 42 93 112 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 14 44 96 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 14 44 95 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - a - + - ML 63 62 6 65 3 12 43 90 109 -11.948 -0.001 -10.603 0.916 -1.542 -0.005 -0.370 D 64 62 6 65 3 11 41 90 108 -7.786 -0.369 -2.178 IL 65 65 3 65 3 13 43 94 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - U - + - ML 66 65 3 68 2 11 42 89 108 -12.610 -0.000 -1.694 -1.716 -2.641 1.690 D 67 65 3 68 2 10 41 89 107 -8.445 -0.004 IL 68 68 3 68 2 12 42 91 109 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 69 68 3 70 179 10 41 88 107 [ BEGL 16 ] - - - - - - S 70 69 1 71 1 0 7 46 65 0.000 [ BIF 17 ] - - - - - - B 71 70 1 72 122 0 7 46 65 [ BEGL 18 ] - - - - - - S 72 71 1 73 4 0 0 27 46 -0.005 -10.033 -9.440 -10.080 [ MATP 19 ] 11 28 C G = = MP 73 72 1 77 6 2 2 27 46 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.624 -6.027 -6.597 1.013 -5.740 -7.460 3.194 -6.272 -6.511 1.545 -6.996 -0.499 -1.495 -6.794 -0.470 -5.242 ML 74 72 1 77 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 75 72 1 77 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 76 72 1 77 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 77 77 5 77 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 78 78 6 78 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 12 27 G C = = MP 79 78 6 83 6 2 2 25 44 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.093 -4.726 -5.917 0.560 -7.035 -6.506 1.043 -6.595 -6.331 3.433 -6.583 -0.132 -2.374 -5.773 -1.366 -4.879 ML 80 78 6 83 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 81 78 6 83 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 82 78 6 83 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 83 83 5 83 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 84 84 6 84 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 13 26 u g = = MP 85 84 6 89 6 2 2 23 42 -2.114 -11.892 -0.382 -10.668 -10.948 -11.343 -6.193 -5.480 -6.139 0.053 -5.501 -6.891 1.097 -5.991 -6.179 2.265 -6.618 0.186 0.927 -6.201 2.266 -4.860 ML 86 84 6 89 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 87 84 6 89 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 88 84 6 89 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 89 89 5 89 6 1 1 22 40 -6.690 -6.953 -0.035 -8.608 -9.384 -9.045 0.000 0.000 0.000 0.000 IR 90 90 6 90 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 25 c g = = MP 91 90 6 95 6 2 2 21 39 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -5.911 -5.290 -5.895 1.503 -5.399 -6.655 2.553 -5.851 -5.958 1.913 -6.410 -0.761 -0.626 -1.614 0.840 -4.702 ML 92 90 6 95 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 93 90 6 95 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 94 90 6 95 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 95 95 5 95 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 96 96 6 96 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 24 c g = = MP 97 96 6 101 6 2 2 19 37 -5.397 -11.892 -0.037 -10.668 -10.948 -11.343 -4.678 -4.760 -1.078 -0.564 -4.449 -5.679 2.540 -4.924 -4.841 0.305 -0.360 0.088 1.568 -4.980 1.301 -1.808 ML 98 96 6 101 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 99 96 6 101 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 100 96 6 101 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 101 101 5 101 6 1 1 19 37 -3.989 -4.252 -0.242 -5.907 -6.683 -6.343 0.000 0.000 0.000 0.000 IR 102 102 6 102 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 23 C G = = MP 103 102 6 107 4 2 2 17 35 -11.053 -11.260 -0.003 -9.674 -11.491 -11.735 -8.283 -8.627 -6.530 -7.823 3.996 -10.677 -11.490 -8.477 -7.850 -10.546 -6.497 -11.672 -7.488 -10.262 ML 104 102 6 107 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 105 102 6 107 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 106 102 6 107 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 107 107 5 107 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 108 108 6 108 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - U - + - ML 109 108 6 111 3 1 1 13 32 -11.969 -0.001 -10.623 -6.041 0.969 -7.095 1.014 D 110 108 6 111 3 0 0 16 34 -6.174 -1.687 -0.566 IL 111 111 3 111 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - G - + - ML 112 111 3 114 3 1 1 12 30 -11.969 -0.001 -10.623 -6.593 -8.359 1.993 -7.354 D 113 111 3 114 3 0 0 15 33 -6.174 -1.687 -0.566 IL 114 114 3 114 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - G - + - ML 115 114 3 117 3 1 1 10 29 -11.969 -0.001 -10.623 -6.593 -8.359 1.993 -7.354 D 116 114 3 117 3 0 0 13 32 -6.174 -1.687 -0.566 IL 117 117 3 117 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - U - + - ML 118 117 3 120 2 1 1 1 1 * 0.000 -8.197 -7.345 -9.248 1.996 D 119 117 3 120 2 0 0 0 0 * 0.000 IL 120 120 3 120 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 121 120 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 122 71 1 123 3 0 0 29 48 -11.969 -0.001 -10.623 IL 123 123 2 123 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - C - + - ML 124 123 2 126 5 1 1 29 48 -10.914 -0.036 -5.405 -10.942 -11.834 -2.636 1.073 0.383 -1.216 D 125 123 2 126 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 126 126 3 126 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 48 C G = = MP 127 126 3 131 6 2 2 28 47 -11.921 -3.450 -0.141 -10.637 -10.917 -11.312 -6.761 -6.317 -6.748 -0.863 -5.707 -7.652 3.613 -6.295 -6.589 -0.002 -7.097 -0.513 -0.558 -7.026 -3.186 -0.666 ML 128 126 3 131 6 1 1 27 45 -7.852 -8.198 -0.316 -2.607 -8.048 -5.578 -1.131 -2.274 1.594 -1.658 MR 129 126 3 131 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 3 131 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 27 46 -4.678 -0.090 -8.189 -6.357 -7.462 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 45 c g = = MP 133 132 6 137 6 2 2 26 44 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.887 -6.618 -6.807 0.775 -5.597 -7.535 2.857 -6.291 -6.696 -0.696 -7.155 -4.220 2.618 -7.041 -3.102 -5.428 ML 134 132 6 137 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 44 G C = = MP 139 138 6 143 6 2 2 24 42 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.575 -6.515 -10.984 -0.027 -11.334 -7.785 -5.789 -10.774 -7.862 3.898 -8.092 -4.386 -6.112 -8.208 -8.170 -9.765 ML 140 138 6 143 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 43 G C = = MP 145 144 6 149 6 2 2 22 40 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883 3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 ML 146 144 6 149 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 148 144 6 149 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 149 149 5 149 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 150 150 6 150 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 42 a u = = MP 151 150 6 155 4 2 2 20 38 -11.053 -11.260 -0.003 -9.674 -7.875 -6.583 -8.018 2.967 -9.183 -10.534 -4.704 -2.228 -7.630 1.009 -8.262 -3.888 2.536 -9.161 -6.640 -6.642 ML 152 150 6 155 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 153 150 6 155 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 154 150 6 155 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 155 155 5 155 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 156 156 6 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - C - + - ML 157 156 6 159 3 1 1 17 36 -11.969 -0.001 -10.623 -6.606 1.827 -7.201 -1.204 D 158 156 6 159 3 0 0 19 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - + - ML 160 159 3 162 3 1 1 16 34 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 161 159 3 162 3 0 0 18 36 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - U - * - ML 163 162 3 165 3 1 1 15 33 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 164 162 3 165 3 0 0 17 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - C - * - ML 166 165 3 168 3 1 1 13 32 -11.969 -0.001 -10.623 -7.477 1.993 -7.951 -6.500 D 167 165 3 168 3 0 0 16 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - A - * - ML 169 168 3 171 3 1 1 12 30 -11.969 -0.001 -10.623 1.994 -8.093 -7.361 -7.495 D 170 168 3 171 3 0 0 15 33 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - A - + - ML 172 171 3 174 3 1 1 10 29 -11.969 -0.001 -10.623 1.994 -8.093 -7.361 -7.495 D 173 171 3 174 3 0 0 13 32 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 41 - A - + - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.957 -3.403 -6.583 -6.404 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 45 ] - - - - - - S 179 69 1 180 3 0 9 53 71 -11.969 -0.033 -5.504 IL 180 180 2 180 3 1 11 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - U - + - ML 181 180 2 183 2 1 10 53 71 -2.748 -0.233 -1.623 -2.634 -1.279 1.633 D 182 180 2 183 2 0 8 52 70 -8.698 -0.003 IL 183 183 3 183 2 1 10 53 71 -2.556 -0.269 0.000 0.000 0.000 0.000 [ BIF 47 ] - - - - - - B 184 183 3 185 247 0 8 52 70 [ BEGL 48 ] - - - - - - S 185 184 1 186 4 0 0 33 50 -0.064 -4.599 -9.440 -10.080 [ MATP 49 ] 52 79 u g = = MP 186 185 1 190 6 2 2 33 50 -11.895 -11.834 -0.112 -3.774 -10.891 -11.286 -3.314 -3.527 -1.907 -0.327 -3.502 -4.363 0.281 -3.861 -0.457 1.216 -2.263 1.059 1.517 -1.526 1.987 -0.302 ML 187 185 1 190 6 1 1 32 49 -8.489 -8.835 -0.195 -3.244 -8.685 -6.214 -2.304 1.746 -3.135 -1.606 MR 188 185 1 190 6 1 1 32 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 1 190 6 0 0 30 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 190 190 5 190 6 1 1 33 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 33 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 78 g c = = MP 192 191 6 196 6 2 2 31 48 -1.956 -11.787 -0.434 -10.564 -10.844 -11.239 -5.908 -0.637 -5.728 1.218 -6.847 -6.325 0.050 -6.415 -6.164 2.760 -6.412 1.923 -1.086 -5.583 -1.238 -1.268 ML 193 191 6 196 6 1 1 29 47 -9.186 -9.532 -0.117 -3.941 -9.382 -6.912 0.254 -2.403 1.230 -1.872 MR 194 191 6 196 6 1 1 29 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 27 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 196 196 5 196 6 1 1 30 47 -2.745 -7.223 -0.253 -8.878 -9.655 -9.315 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 30 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 77 g c = = MP 198 197 6 202 6 2 2 28 46 -11.952 -11.892 -0.038 -10.668 -5.341 -11.343 -6.032 -4.676 -5.853 1.897 -6.949 -6.454 0.239 -6.528 -6.282 2.977 -6.533 -0.036 1.004 -5.712 -4.035 -4.814 ML 199 197 6 202 6 1 1 27 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 27 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 202 202 5 202 6 1 1 29 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 76 G C = = MP 204 203 6 208 6 2 2 26 44 -2.546 -11.856 -0.274 -10.633 -10.913 -11.308 -6.021 -4.666 -1.836 -0.438 -6.934 -6.446 1.004 -6.514 -6.268 3.426 -6.521 -0.383 -2.285 -5.705 0.122 -4.803 ML 205 203 6 208 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 24 42 -8.575 -7.304 -0.368 -7.282 -2.416 -5.496 -1.302 -2.476 1.650 -1.861 D 207 203 6 208 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 208 208 5 208 6 1 1 25 43 -6.253 -0.775 -1.808 -3.158 -8.947 -8.608 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 25 42 -4.853 -0.079 -8.364 -6.532 -7.638 0.000 0.000 0.000 0.000 [ MATP 53 ] 59 74 g u = = MP 210 209 6 214 6 2 2 24 41 -11.924 -11.863 -0.003 -10.640 -10.919 -11.314 -6.996 -6.053 -6.806 -2.301 -6.317 -7.410 0.707 -6.762 -6.968 1.996 -0.819 2.985 0.312 -6.888 -1.485 -5.636 ML 211 209 6 214 6 1 1 23 40 -7.775 -8.121 -0.335 -2.529 -7.971 -5.500 -1.027 -2.151 1.555 -1.535 MR 212 209 6 214 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 213 209 6 214 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 214 214 5 214 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 215 215 6 215 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 60 73 c g = = MP 216 215 6 220 6 2 2 22 39 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -4.593 -4.591 -4.737 0.767 -4.483 -0.671 2.458 -4.910 -4.782 1.660 -5.327 0.814 0.687 -1.009 -0.285 -3.836 ML 217 215 6 220 6 1 1 21 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 218 215 6 220 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 219 215 6 220 6 0 0 19 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 220 220 5 220 6 1 1 22 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 221 221 6 221 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 61 72 c g = = MP 222 221 6 226 6 2 2 20 37 -11.952 -11.892 -0.036 -5.407 -10.948 -11.343 -5.843 -5.507 -5.877 1.185 -5.134 -6.691 2.466 -5.685 -5.848 2.030 -1.026 -0.448 1.083 -6.005 -0.761 -4.652 ML 223 221 6 226 6 1 1 19 36 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 224 221 6 226 6 1 1 19 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 225 221 6 226 6 0 0 17 34 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 226 226 5 226 6 1 1 20 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 227 227 6 227 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 62 71 G C = = MP 228 227 6 232 4 2 2 18 35 -11.016 -0.895 -1.119 -9.637 -5.917 -0.575 -5.763 0.138 -1.535 0.028 -0.121 -6.371 -6.156 3.232 -6.433 -2.305 0.016 -5.642 0.266 -4.727 ML 229 227 6 232 4 1 1 17 34 -5.155 -5.337 -0.172 -4.067 1.638 -2.044 -1.709 -1.556 MR 230 227 6 232 4 1 1 18 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 231 227 6 232 4 0 0 17 34 -4.568 -4.250 -2.265 -0.520 IL 232 232 5 232 4 1 1 19 36 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 233 233 6 233 3 1 1 16 34 -2.105 -0.386 -8.850 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - u - + - ML 234 233 6 236 3 1 1 13 32 -11.969 -0.001 -10.623 -2.331 0.086 0.408 0.499 D 235 233 6 236 3 0 0 16 34 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - c - + - ML 237 236 3 239 3 1 1 12 30 -11.969 -0.035 -5.390 -0.171 0.859 -1.009 -0.320 D 238 236 3 239 3 0 0 14 33 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - A - + - ML 240 239 3 242 3 1 1 10 29 -11.935 -0.001 -10.589 1.518 -5.822 0.003 -3.097 D 241 239 3 242 3 0 0 12 30 -8.327 -0.243 -2.718 IL 242 242 3 242 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - g - + - ML 243 242 3 245 2 1 1 1 1 * 0.000 0.133 -2.553 0.891 -0.187 D 244 242 3 245 2 0 0 0 0 * 0.000 IL 245 245 3 245 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 246 245 3 -1 0 0 0 0 0 [ BEGR 62 ] - - - - - - S 247 184 1 248 3 0 0 29 48 -11.969 -0.001 -10.623 IL 248 248 2 248 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 80 - G - + - ML 249 248 2 251 5 1 1 29 47 -10.914 -0.003 -10.730 -10.942 -11.834 -6.593 -8.359 1.993 -7.354 D 250 248 2 251 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 251 251 3 251 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 81 97 g u = = MP 252 251 3 256 6 2 2 28 46 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -7.972 -6.523 -8.192 -0.967 -10.265 -10.229 -5.646 -8.236 -7.645 2.908 -8.267 2.981 -5.612 -9.169 -7.524 -6.796 ML 253 251 3 256 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 254 251 3 256 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 255 251 3 256 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 256 256 5 256 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 257 257 6 257 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 82 96 U A = = MP 258 257 6 262 6 2 2 26 44 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.758 -6.494 -6.696 0.146 -5.499 -7.443 1.670 -6.188 -6.580 -2.118 -7.051 -0.631 3.149 -6.915 0.884 -5.310 ML 259 257 6 262 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 260 257 6 262 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 261 257 6 262 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 262 262 5 262 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 263 263 6 263 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 83 95 G C = = MP 264 263 6 268 6 2 2 24 42 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.601 -2.343 -6.474 2.079 -7.643 -7.018 0.375 -7.090 -6.710 3.304 -7.001 -2.788 -2.974 -6.341 -4.725 -5.406 ML 265 263 6 268 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 266 263 6 268 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 267 263 6 268 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 268 268 5 268 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 269 269 6 269 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 84 94 G C = = MP 270 269 6 274 6 2 2 22 40 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.418 -6.513 -10.563 0.693 -11.229 -7.845 -5.765 -10.433 -7.847 3.834 -8.098 -4.350 -6.065 -8.239 -8.107 -9.298 ML 271 269 6 274 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 272 269 6 274 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 273 269 6 274 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 274 274 5 274 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 275 275 6 275 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 68 ] 85 93 G C = = MP 276 275 6 280 4 2 2 20 38 -11.053 -11.260 -0.003 -9.674 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883 3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 ML 277 275 6 280 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 278 275 6 280 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 279 275 6 280 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 280 280 5 280 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 281 281 6 281 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 86 - U - + - ML 282 281 6 284 3 1 1 17 36 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 283 281 6 284 3 0 0 19 37 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 87 - U - + - ML 285 284 3 287 3 1 1 16 34 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 286 284 3 287 3 0 0 18 36 -6.174 -1.687 -0.566 IL 287 287 3 287 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 88 - C - + - ML 288 287 3 290 3 1 1 15 33 -11.969 -0.001 -10.623 -7.477 1.993 -7.951 -6.500 D 289 287 3 290 3 0 0 17 35 -6.174 -1.687 -0.566 IL 290 290 3 290 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 89 - G - + - ML 291 290 3 293 3 1 1 13 32 -11.969 -0.001 -10.623 -3.727 -8.215 1.969 -7.257 D 292 290 3 293 3 0 0 16 34 -6.174 -1.687 -0.566 IL 293 293 3 293 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 90 - A - + - ML 294 293 3 296 3 1 1 12 30 -11.969 -0.001 -10.623 1.994 -8.093 -7.361 -7.495 D 295 293 3 296 3 0 0 15 33 -6.174 -1.687 -0.566 IL 296 296 3 296 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 91 - U - + - ML 297 296 3 299 3 1 1 10 29 -11.969 -0.001 -10.623 -6.046 0.945 -7.094 1.037 D 298 296 3 299 3 0 0 13 32 -6.174 -1.687 -0.566 IL 299 299 3 299 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 92 - U - + - ML 300 299 3 302 2 1 1 1 1 * 0.000 -8.197 -7.345 -9.248 1.996 D 301 299 3 302 2 0 0 0 0 * 0.000 IL 302 302 3 302 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 76 ] - - - - - - E 303 302 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-SeC-043016 LENG 95 MAXL 182 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sat Apr 30 15:16:09 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/bact-SeC-043016.sto NSEQ 59 EFFN 3.482239 CKSUM 3815334794 STATS LOCAL MSV -8.9124 0.71863 STATS LOCAL VITERBI -10.1148 0.71863 STATS LOCAL FORWARD -3.4198 0.71863 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.66423 1.29067 1.20700 1.44188 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 0.00000 * 1 2.51682 3.53042 0.15355 3.43168 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 2 2.90103 3.71406 0.11121 3.65328 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 3 0.92502 2.28596 0.90692 2.32242 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 4 0.57810 2.92068 1.13907 2.73297 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 5 2.36950 3.40108 0.17988 3.27636 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 6 1.57542 1.32246 1.41823 1.25717 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 7 1.68280 1.75148 0.77852 1.70624 7 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 8 1.49307 1.34800 1.42807 1.28812 8 u = - ( 1.38629 1.38629 1.38629 1.38629 0.04026 4.20436 3.70767 1.46634 0.26236 1.09861 0.40547 9 0.95473 1.92845 1.50714 1.39364 9 a + - , 1.38629 1.38629 1.38629 1.38629 0.03061 4.19471 4.19471 1.46634 0.26236 0.79620 0.59973 10 1.87718 1.98594 2.40699 0.47861 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 11 1.84206 1.00340 1.39538 1.48219 11 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 12 1.76621 1.94816 0.57985 2.06750 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 13 1.87625 1.48672 1.17653 1.16355 13 u = - < 1.38629 1.38629 1.38629 1.38629 0.22821 1.66540 4.20436 0.15104 1.96476 1.09861 0.40547 14 1.66551 1.25808 1.29139 1.37905 15 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 15 1.70470 1.26567 1.51498 1.15103 16 u = - < 1.38629 1.38629 1.38629 1.38629 0.04875 3.42178 4.20436 0.75100 0.63846 1.09861 0.40547 16 3.68568 0.14598 3.52516 2.50960 18 C = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 17 2.18177 0.95684 2.75488 0.82226 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 18 3.17650 4.11094 0.08708 3.67791 20 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 19 3.17650 4.11094 0.08708 3.67791 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 20 3.06951 2.95784 3.60158 0.13428 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 21 2.78726 3.68937 0.12563 3.45832 23 G = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 22 1.45508 1.78144 0.98021 1.50062 24 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 23 1.73046 1.41834 1.05045 1.46576 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 24 1.65215 1.34323 1.07259 1.58357 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 25 2.36295 0.68186 1.76945 1.47073 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 26 1.75473 1.56667 0.87836 1.59533 28 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 27 1.71003 1.05029 1.40488 1.49652 29 c + - , 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 28 2.04842 0.82246 1.65476 1.42472 30 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 29 1.96949 0.99178 1.90621 1.07613 31 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 30 2.35197 3.42118 0.17961 3.30919 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 31 2.89407 3.70428 0.11230 3.64003 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 32 1.30850 1.66748 1.39407 1.22762 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 33 2.70621 0.30695 3.31168 1.82595 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 34 3.06951 2.95784 3.60158 0.13428 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 35 3.06951 2.95784 3.60158 0.13428 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 36 3.42192 0.11483 3.98323 2.86101 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 37 0.09283 3.71958 3.39964 3.47309 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 38 0.09283 3.71958 3.39964 3.47309 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 39 0.16270 3.01192 3.02633 2.94770 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 40 1.37391 1.52864 1.50999 1.17395 42 u = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 41 3.82274 0.13396 3.55772 2.59023 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 42 3.52613 0.20800 3.26227 2.11966 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 43 1.21600 2.07138 0.88765 1.79603 45 g = - > 1.38629 1.38629 1.38629 1.38629 0.12027 2.49733 3.47325 0.33016 1.26871 1.09861 0.40547 44 1.69045 1.88720 0.72574 1.71423 48 g = - > 1.38629 1.38629 1.38629 1.38629 0.04648 4.18814 3.49844 1.46634 0.26236 0.67435 0.71231 45 1.77817 2.07718 2.08493 0.54222 49 U + - , 1.38629 1.38629 1.38629 1.38629 0.14103 2.15087 4.18942 0.37116 1.17097 0.69487 0.69143 46 1.63969 1.54741 1.37539 1.07757 52 u = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 47 1.56670 2.01377 0.69234 1.84909 53 G = - < 1.38629 1.38629 1.38629 1.38629 0.23654 1.63111 4.20436 0.28010 1.40939 1.09861 0.40547 48 1.54517 1.95960 0.74057 1.77805 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.04928 4.20436 3.40642 1.46634 0.26236 1.09861 0.40547 49 1.78762 1.85575 0.65690 1.84612 57 G = - < 1.38629 1.38629 1.38629 1.38629 0.17272 1.94197 4.18596 0.20005 1.70755 0.64212 0.74691 50 1.81870 1.75570 0.74130 1.66874 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 51 1.64840 1.31395 1.27764 1.34634 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 52 1.70380 1.28461 1.23799 1.38118 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 53 1.63474 1.63332 0.96248 1.47941 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 54 1.64062 1.48466 1.40277 1.09767 64 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 55 1.35098 1.14123 1.88639 1.30945 65 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04704 4.20436 3.47325 1.46634 0.26236 1.09861 0.40547 56 0.55666 2.53840 1.49816 2.08468 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03082 4.18814 4.18814 1.46634 0.26236 0.67435 0.71231 57 1.24382 2.08804 1.08804 1.38265 67 g + - _ 1.38629 1.38629 1.38629 1.38629 0.52506 0.97756 3.43415 0.31284 1.31442 1.09861 0.40547 58 1.73525 0.98926 1.46861 1.50712 71 c = - > 1.38629 1.38629 1.38629 1.38629 0.03086 4.18688 4.18688 1.46634 0.26236 0.65536 0.73242 59 1.60608 1.41680 1.10627 1.48700 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 60 1.61032 1.43076 1.16565 1.38899 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.04572 4.20436 3.51465 1.46634 0.26236 1.09861 0.40547 61 1.89254 1.16760 1.53055 1.13388 74 u = - > 1.38629 1.38629 1.38629 1.38629 0.11635 2.35721 4.18942 0.29417 1.36707 0.69487 0.69143 62 2.19512 0.76022 1.58471 1.53209 76 c = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 63 1.97464 0.85370 1.80166 1.30812 77 c = - > 1.38629 1.38629 1.38629 1.38629 0.08602 4.20436 2.69572 1.46634 0.26236 1.09861 0.40547 64 2.16829 0.87475 1.80286 1.19127 78 c = - > 1.38629 1.38629 1.38629 1.38629 0.06458 4.15036 3.06234 1.46634 0.26236 0.36632 1.18181 65 1.42448 1.63972 1.17366 1.36220 79 g = - > 1.38629 1.38629 1.38629 1.38629 0.03125 4.17453 4.17453 1.46634 0.26236 0.51508 0.90995 66 3.17650 4.11094 0.08708 3.67791 80 G + - , 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 67 2.03018 2.99379 0.27538 2.82504 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 68 1.99048 1.26580 1.80734 0.87403 82 u = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 69 1.48793 2.17100 0.58710 2.26183 83 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 70 2.11766 3.27815 0.22374 3.15898 84 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 71 2.90135 3.71452 0.11116 3.65390 85 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 72 3.06951 2.95784 3.60158 0.13428 86 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 73 3.06951 2.95784 3.60158 0.13428 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 74 3.42192 0.11483 3.98323 2.86101 88 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 75 2.85284 3.90073 0.11477 3.48935 89 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 76 0.09283 3.71958 3.39964 3.47309 90 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 77 2.18129 0.97152 2.75317 0.80997 91 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 78 3.06951 2.95784 3.60158 0.13428 92 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 79 3.82979 0.13356 3.56114 2.59153 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 80 3.37756 0.25879 3.10249 1.90418 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 81 2.51559 0.65753 2.01780 1.31636 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 82 1.08185 2.04831 1.03490 1.73264 96 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 83 3.05973 0.70115 2.79881 0.92582 97 c = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 84 1.40595 1.72009 1.16414 1.33322 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 85 1.93742 0.86247 1.58010 1.47906 99 c = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 86 1.42094 1.54285 1.18867 1.42663 100 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 87 3.48427 0.22009 3.22910 2.06136 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 88 2.95298 1.47856 2.71989 0.42470 102 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 89 2.56447 1.01517 2.12333 0.81856 103 u = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 90 3.84446 0.13274 3.56822 2.59423 104 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 91 3.65102 0.17920 3.37685 2.26391 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 92 3.17650 4.11094 0.08708 3.67791 106 G + - : 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 93 3.42192 0.11483 3.98323 2.86101 107 C * - : 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 94 3.42192 0.11483 3.98323 2.86101 108 C * - : 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 95 0.14108 3.18972 3.11453 3.07921 109 A * - : 1.38629 1.38629 1.38629 1.38629 0.01527 4.18931 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-bact-iso.i1m0000644000543100007160000330476413054776762020275 0ustar pchanlowelabAL ..///000111222333444444555555666666777777888888999:::;;;<<<===>>>???@ !!!!!!""""""######$$$$$$%%%%%%&&&'''((()))***+++,,,-                                                 %%%%%&+++++,111112777778;;;>>>AADDDGGGJJJMMMPPPUUUUUV[[[[[\aaaaabggggghmmmmmnqqqtttwwwzzz}}}@  %&&&&&+,,,,,1222227888;;;>>?AAADDDGGGJJJMMMPPPPPUVVVVV[\\\\\abbbbbghhhhhmnnnqqqtttwwwzzz}}}? !'-39<?@BEHKNQW]ciorux{~4440430320,1(00+/',,.,-',,1-,'-,/,+',.-+*',,+*)'**)(('(('&'&%&% 6<75=;4b>3?<9100<8/J.9.-K-,>+L~7*)    FF4430/3321/-1100+,//.0*+/.,),++*+* 1   (*('('#&#'&%$$"$%###"""!"" 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[><>>i>?@>`7?>>>> bact-Alabact-Ala-r2-022416 GGGGcuaUAGCUCAGCUGGgAGAGCGCCUGCcUucuAcGCAGGAGGUCagcGGUUCGAuUCCgcuuagCUCCACCA  !$'()*+,-/12456789:ABCDEFG   Thu Feb 25 04:10:05 2016cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ala-r2-022416.sto cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cmL=L=Hz>Hz>V瞯<77Ѷ>|zFWL >>>>?558?'o|?ni5$MDS\U]:jYE)]?\r)? ,>i&?Jz=@>w=@.?E==VO=5?=~>3>,>0>>>xO<>6"><>a=8>Z>==ݢ<Pj?PRR?C"u<=1 >r=ɵE>z^">oL?憁=/?=8#/>k o?E<,ޠ<=ϵ@?2=>>Y=}Z>mVc= =/<(Y?<綟;w?pD<8v<;by?g;=rk>֫>w>&d?]?=i0?=x ?0>X>==)=Q?Cz]4?T=(>0g ?ҭ >أB>W=?v=d> >T 8>G>{>>=>N ?f>[>U\>d.>E[>U5>cӰ>bJ=n>j=Cj=3l&>Oj>߱>- q>(>jhg>坍>>r>H>6> E?LE/"=$z>RA> ">J>*>. >F?),>R=`?G>߬>>L>^c9>v^>:&>P> =?>Nh%>a=g?@>UKC?g`'=p>\=>u=FU=y=ҘF?m$= ;? <˜>V>W=b>=>~>?5>X>c>;>=">ӎ>=8?=!3<}B(>G>{>8R=U>=?a~,<8r?\<=ju=/,,?2e=X>O= >R>EF>S=>L>z >=J>>@>jH>Z>>>}K>}0>~s>>^>rp>eW>aZ>t=/?=>Ps~= >> ?jC=0!?r">ˉ'>CX<t?K <%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>^|?U;U;Nl>D??^|?U;U;Nl>D?Ī>t*?z?r;;,QD?Ī>t*?,Fw?kS?pB>D?.>h=?qrz?j<;hW>3?>1`Y?ev?*<;'?Ȱ>v>E?C|?se;;Nl>D?>?~>f|?c;c;Nl>D?T>#?w?E:<ç< >?Ī>t*?Z|?UR;UR;Nl>D?Q>/K?C|?XO;N;Nl>D?>H$?P|?);;Nl>D?,s>:C?gu?:P<v}< ?>>q>lC? W|?U-;U-;Nl>D?> ?{??;;D?^!p>C?>?κ;*}>Nl>D?`> G?vo?j\=_#<ۗ>4?Xp?t=Be|?;;Nl>D?lr>F2?Be|?;;Nl>D?lr>F2?:?>;:l?(=>r?w?u</; ?>Ī>t*?2g|?/;/;Nl>D?Ī>t*?p{?/;LD?Ī>t*?c|?b;.X;Nl>D?>?2g|?30;30;Nl>D?k>*?2g|?/;/;Nl>D?Ī>t*?{?/;W]KD?Ī>t*?b|?n;n;Nl>D?><;? 2*?"'<ɢ>A?)|>>D?Eu?۩+=R%|?;;Nl>D?"W?f#>2g|?30;30;Nl>D?ń>*?2g|?30;30;Nl>D?ń>*?2g|?30;30;Nl>D?ń>*?2g|?30;30;Nl>D?ń>*?2g|?30;30;Nl>D?ń>*?2g|?30;30;Nl>D?ń>*?'< ?5T>ń>*?&?;.H>Nl>D?,5>|5?z?7.<7.D?*0?>|?J;;Nl>D?[V?Q&>b|?n;n;Nl>D?X6>;?b|?m;m;Nl>D?+>?C%w?/;D?Ī>t*?>?+(~>"; |<|?)?pǭ>2g|?&3;&3;Nl>D? >**?2g|?&3;&3;Nl>D?G> *?1|?/;oD?Ī>t*?Z{?^;%#D?Q>-?c|?5;5;Nl>D?˻>7?c|?5;5;Nl>D?˻>7?E{?+;<5;R>?%>?f|?^;^;Nl>D?Q>-?f|?^;^;Nl>D?Q>-? O?l<>^;jg<`|?Q>-?f|?^;^;Nl>D?Q>-?]={?Di=<^;`>?Q>-?f|?^;^;Nl>D?0^>P$?c8s?ֆ#=w#<9?]>Ī>t*?{?:?>?f|?^;^;Nl>D?Q>-?yz?X<^; >H?Q>-?{?^;7$D?Q>-?d|?9;9;Nl>D? >?z?/;ND?Ī>t*?{?~;&D?ʐ>7:? {?lH<);ъ>y?|s> C?_z?&C?|s> C?[|?;;Nl>D?b>N$?q_|?;h;Nl>D?>?2g|?&3;&3;Nl>D?>*?z?K\<1;><?Ī>t*?F?rNl>D?Ī>t*?=z?B8D?=#v?=z?B8D?=#v?}?9[:<Nl>D?? bact-Alabact-Ala-r2-022416 GGGGcugUAGCUCAGcUGGgAGAGCGCCuGcuUuuuAcGCaGGAGGUCgGgGGUUCGAuUCCccucggCUCCACCA (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ala-r2-022416.sto> BAThu Feb 25 04:10:07 2016  !$'()*+,-/12456789:ABCDEFG   WL w- 8?=8?_l8?OǀOǀOǀOǀOǀOq^>>C >O,k>BM //000111222333444555555666666777777888888999999:::;;;<<<===>>>???@@@A !!!""""""######$$$$$$%%%%%%&&&&&&'''((()))***+++,,,---.                                                  %%%%%&+++++,111112777778;;;>>>AADDDGGGJJJMMMPPPUUUUUV[[[[[\aaaaabggggghmmmmmnqqqtttwwwzzz}}}@  %&&&&&+,,,,,1222227888;;;>>?AAADDDGGGJJJMMMPPPPPUVVVVV[\\\\\abbbbbghhhhhmnnnqqqtttwwwzzz}}}? !'-39<?@BEHKNQW]ciorux{~***&*)&)(&"(!*"$#$(!##'&!""#%!!""#! !"!  ;=:F83FU#!%"!$!"! 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M9F:Ƅc9q<8n6\/6g99?ܨ61 77\+8[6?<<>$<?o=4>KD>;F`> >Mw9/:/<#;r;y?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>505K|?N6q*6KI7 $6?I66f4,g6m;/7n6\/6g99?ܨ61 7?5(88838ʵ8:tt8}? #9v:j@9?t:Mw9/:/<#;r;y?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>x=Y5{.k?|yQ6x,6^36);*ɪ6@8hO>%7`6"9>{66>aV6%:h>8t6:B97?B6499IXe96)78ë8?M838ʵ8:tt8}? #9EX9?oP9]:H:6M7]9[y?I59G< s?7>>>G93?R79ѳ8B'8>>>>5 >[.X?ȊQ6,6<*62s66<½ 7ܚ7Cl?6_0:>^75=>j$?]5=<@=>>>>vX?!>6q7t6>>>>ۊ65\?޿6ڂ6Щ<;ۃ6<7 7c?̸66yN>VL67>>Ug6a}=8 e=s=6*4? >4>KD>;F`> >9:9O:%?v:j@9?t:kb7978? >';F>> =>>>>ty>B? h=>>>>f 5?G6|=a&>:d=d!>R?6@=i?ty>B? h=>>>>j5?D6Slo9RB? h=>>>>j5?D6Haz>4>{>>sZQ6ҭ>V^?ty>B? h=>>>> ^>wH?A6NƇ>W-X>FC>P>ep628?4> ?17>>>>R5?A6̊> >aR/>s>ep628?ty>B? h=>>>>R5?A6Qx?6كB? h=>>>>?d[ ?%><>>?@>`7?>>>> bact-Valbact-Val-r2-022416 GGGcgcUUAGCUCAGUUGGUAGAGCACCuCCuUuucAAGGaGGaGGUCgcuGGUUCGAgUCCagcAgcgCCCACCA  !#$%&'EFGHIJPQRS]_`abcyz{|}~]Thu Feb 25 21:44:39 2016cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Val-r2-022416.sto cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cmL=L=Hz>Hz>V瞯<77Ѷw:iF=kC>>>>m"8?6qr?xWf>7I1j\6qrC?{j?wJ[=Oc/j[̖p?xqZ|?Xs`"82?j]J]2a?fIZ?IF"DU?j F=Ӟb?L>6=7?~==[>{,?K=m>==?BA=([><'>:>ޙ>O)>,r>->=->@>$B>g>Q>F2>>Þ>>d<*T=@?X)=]x=->t= C>(>j?WГ<:=#<Y==1=;>S>fp>~>>>4=q{>U+5>A>S>C>=+> >M+>1= U>|R> >i0>> =>=> c`>U>\ː>R>@>3>v>>,<4>^ϋ>m?*0<=<7<:A>ˋ3>p= >4S>~kI>>F=>>/>>> >}>&N>>/=2>&>>ú=~>ڱ=j3>=>=p>_=hC.?$Z=*=֐=p=ܳ=?=!rA?T*=z=>q=?= >;>!>.v>5 >@>C>`>> A<4O?_{=1=_K<5i?<$=5&=e=b?68=G= 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|?;;Nl>D?Ī>t*?)T?;o(>Nl>D?Ī>t*?Ve?=m.<?~>cl?2={?;D?Ī>t*?s|?Ɲ;Ɲ;Nl>D?|;>[b5?k.?Z|>5 |;>[b5?d{?D;wh#D?$n>H ?s|?;;Nl>D?qӣ>`.?|?";";Nl>D?;>#?z?XT< ;|2>f?OB>'?}|?;;;Nl>D?Ī>t*? |?`;`;Nl>D?ۨ>0+?z?`;웈D?ۨ>0+?z?<;=D?nTc>*G?9U?$>wW;P2Z=\r?>?xa?<;=Nl>D?nTc>*G?|?D;D;Nl>D?.N=es?|?D;D;Nl>D?nM=s`?%|?;;Nl>D?_=r?%|?;;Nl>D?&>PV?޷M?!A>q;X ?N>24z=\p?4|?;;Nl>D?24z=\p?4|?;;Nl>D?24z=\p?mx?q;TD?24z=\p?[\?=<- >W?&>PV?Pj?7=\;S?m-1>f=Αq?|*|?\;\;Nl>D?6>]?4|?;;Nl>D?24z=\p?4|?;;Nl>D?F=Io?{?;D?z=Tp?Z?=<>~=?4=l?Fo?*;xf=Nl>D?n2V=r?0{?PD?>?4|?;;Nl>D?z=Tp?4|?;;Nl>D?z=Tp?4|?;;Nl>D?z=Tp?4|?;;Nl>D?z=Tp?4|?;;Nl>D?z=Tp?Lvw?;ȈD?z=Tp?"|?e;e;Nl>D?B?ڧt>$?>; r< 8|?r$:>wQ?+}|?d;d;Nl>D?r$:>wQ?+}|?d;d;Nl>D?"?$>|?;I;Nl>D?Ī>t*? |?;;Nl>D?>!r*?v?8?Ī>t*? |?;;Nl>D?A>p*? |?;;Nl>D?>*?y|?;5;Nl>D?Ī>t*? |?;;Nl>D?m[>`R(?x?G;_ӬD?Ī>t*?m|?t;t;Nl>D?:?>m|?;_H;Nl>D?o>G,?+z?ǁ<;>?J>'?y?;D?ة>+?i|?;;Nl>D?A^>oH?i|?;;Nl>D?Q? >`w?<;a?<>Ī>t*?K?BN Nl>D?Ī>t*?z?+<+D?!=u?z?+<+D?!=u?I}?-<Nl>D?? bact-Valbact-Val-r2-022416 GGGcguuUAGCUCAGUUGGuAGAGCAccuccuUuuaAagggggaGGUCGcuGGUUCGAguCCggcagcgCCCACCA (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Val-r2-022416.stow:)ACThu Feb 25 21:44:39 2016  !#$%&'EFGHIJPQRS]_`abcyz{|}~=kCG8?8?aTf8?OǀOǀOǀOǀOǀOdzo> €>9>ðp>tRNAscan-SE-2.0/lib/models/TRNAinf-bact-ns.cm0000644000543100007160000016732512706352166020020 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME bact-030216 STATES 283 NODES 95 CLEN 93 W 364 ALPH RNA RF yes CONS yes MAP yes DATE Wed Mar 2 10:51:10 2016 COM [1] cmbuild -F --enone --noss --hand bact-ns-030216.cm bact-030216.sto COM [2] cmcalibrate --hfile bact-ns.hfile --sfile bact-ns.sfile --qqfile bact-ns.qqfile --ffile bact-ns.ffile --seed 208 bact-ns-030216.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 73969 EFFN 73969.000000 CKSUM 3791442110 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8939 0.71661 ECMLC 0.62055 -11.86249 -1.15390 1600000 922895 0.001300 ECMGC 0.33924 -17.29022 -5.61600 1600000 20990 0.019057 ECMLI 0.53098 -12.33959 -0.23096 1600000 743751 0.001613 ECMGI 0.34672 -12.50671 -1.23300 1600000 19935 0.020065 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 364 743 -21.307 -21.514 -0.044 -5.041 IL 1 1 2 1 4 31 52 366 746 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 31 52 366 745 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - G - = - ML 3 2 3 5 3 33 53 365 744 -8.716 -0.004 -10.591 -1.892 -1.624 1.707 -2.811 D 4 2 3 5 3 27 47 361 740 -24.421 -1.343 -0.723 IL 5 5 3 5 3 33 53 365 744 -13.057 -0.000 -20.701 0.000 0.000 0.000 0.000 [ MATL 2 ] 4 - G - = - ML 6 5 3 8 3 32 52 364 743 -7.231 -0.011 -9.861 -1.627 0.470 1.115 -2.993 D 7 5 3 8 3 26 47 359 738 -23.746 -3.331 -0.151 IL 8 8 3 8 3 32 52 364 743 -14.560 -0.000 -22.203 0.000 0.000 0.000 0.000 [ MATL 3 ] 6 - g - = - ML 9 8 3 11 3 31 51 363 742 -6.804 -0.023 -7.225 0.274 -0.120 0.748 -2.387 D 10 8 3 11 3 26 47 359 738 -23.682 -3.623 -0.122 IL 11 11 3 11 3 31 52 363 742 -2.459 -0.290 -22.921 0.000 0.000 0.000 0.000 [ MATL 4 ] 9 - G - = - ML 12 11 3 14 3 30 51 362 741 -7.511 -0.011 -8.700 -0.852 -0.064 1.001 -1.033 D 13 11 3 14 3 26 46 358 738 -24.037 -3.447 -0.139 IL 14 14 3 14 3 31 51 362 742 -1.443 -0.661 -22.579 0.000 0.000 0.000 0.000 [ MATL 5 ] 12 - c - = - ML 15 14 3 17 3 29 50 361 740 -8.665 -0.009 -8.064 -0.288 0.586 0.323 -1.223 D 16 14 3 17 3 26 46 358 737 -24.051 -2.668 -0.247 IL 17 17 3 17 3 29 50 361 740 -13.118 -0.000 -20.762 0.000 0.000 0.000 0.000 [ MATL 6 ] 14 - g - = - ML 18 17 3 20 3 28 49 360 739 -4.962 -0.051 -8.427 -0.037 -0.175 0.237 -0.058 D 19 17 3 20 3 26 46 358 737 -24.048 -1.134 -0.877 IL 20 20 3 20 3 29 49 360 740 -1.273 -0.770 -25.237 0.000 0.000 0.000 0.000 [ MATL 7 ] 19 - G - = - ML 21 20 3 23 3 27 48 359 738 -4.875 -0.074 -5.958 -0.574 -3.355 1.322 -0.453 D 22 20 3 23 3 25 46 357 736 -23.460 -3.217 -0.164 IL 23 23 3 23 3 28 48 359 739 -1.291 -0.758 -25.323 0.000 0.000 0.000 0.000 [ MATL 8 ] 24 - U - + - ML 24 23 3 26 3 26 47 358 737 -6.087 -0.030 -7.488 -3.029 -4.816 -3.051 1.896 D 25 23 3 26 3 25 46 357 736 -24.392 -0.020 -6.208 IL 26 26 3 26 3 27 48 360 740 -0.513 -1.741 -25.072 0.000 0.000 0.000 0.000 [ MATL 9 ] 30 - A - + - ML 27 26 3 29 3 25 46 357 736 -7.666 -0.035 -5.694 1.237 -2.509 0.215 -1.703 D 28 26 3 29 3 24 45 356 735 -22.035 -0.029 -5.649 IL 29 29 3 29 3 27 47 357 737 -1.644 -0.556 -22.344 0.000 0.000 0.000 0.000 [ MATL 10 ] 33 - G - = - ML 30 29 3 32 3 26 45 356 735 -6.082 -0.026 -8.318 -1.801 -1.519 1.709 -3.408 D 31 29 3 32 3 21 41 352 732 -23.768 -1.780 -0.497 IL 32 32 3 32 3 26 46 356 736 -1.412 -0.680 -24.032 0.000 0.000 0.000 0.000 [ MATL 11 ] 37 - C - = - ML 33 32 3 35 3 25 44 355 734 -7.387 -0.021 -6.895 -1.856 1.217 -1.360 0.013 D 34 32 3 35 3 21 40 351 731 -23.564 -5.021 -0.045 IL 35 35 3 35 3 26 45 355 735 -1.329 -0.732 -22.783 0.000 0.000 0.000 0.000 [ MATL 12 ] 40 - U - = - ML 36 35 3 38 3 24 44 354 733 -7.928 -0.014 -7.439 -2.675 -0.060 -0.322 1.059 D 37 35 3 38 3 21 40 351 731 -24.112 -1.308 -0.746 IL 38 38 3 38 3 24 44 354 733 -13.854 -0.000 -21.498 0.000 0.000 0.000 0.000 [ MATL 13 ] 42 - C - = - ML 39 38 3 41 3 23 43 353 732 -5.128 -0.045 -8.772 -1.061 1.124 -0.403 -0.772 D 40 38 3 41 3 20 40 350 729 -23.835 -1.001 -0.999 IL 41 41 3 41 3 25 44 358 737 -0.286 -2.474 -26.778 0.000 0.000 0.000 0.000 [ MATL 14 ] 50 - A - + - ML 42 41 3 44 3 22 42 351 731 -19.479 -0.011 -7.031 1.809 -2.216 -4.178 -2.155 D 43 41 3 44 3 20 39 348 728 -23.125 -1.388 -0.695 IL 44 44 3 44 3 23 43 355 734 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 51 - G - + - ML 45 44 3 47 3 21 41 350 730 -19.475 -0.021 -6.133 0.062 -1.643 1.346 -3.416 D 46 44 3 47 3 19 38 347 727 -23.422 -1.694 -0.534 IL 47 47 3 47 3 23 42 354 734 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 52 - U - + - ML 48 47 3 50 3 21 40 349 729 -4.958 -0.945 -1.157 -2.123 0.278 -2.321 1.238 D 49 47 3 50 3 19 38 346 725 -24.113 -10.282 -0.001 IL 50 50 3 50 3 24 44 374 753 -0.100 -3.907 -28.375 0.000 0.000 0.000 0.000 [ MATL 17 ] 68 - U - + - ML 51 50 3 53 3 21 40 347 727 -2.034 -0.407 -9.359 -2.320 -0.307 -4.790 1.563 D 52 50 3 53 3 19 38 346 725 -28.348 -0.050 -4.863 IL 53 53 3 53 3 22 40 348 727 -1.061 -0.942 -27.475 0.000 0.000 0.000 0.000 [ MATL 18 ] 76 - G - + - ML 54 53 3 56 3 20 39 346 726 -5.106 -0.046 -8.583 -4.148 -6.791 1.939 -3.305 D 55 53 3 56 3 16 35 342 722 -23.558 -2.911 -0.206 IL 56 56 3 56 3 22 41 362 741 -0.124 -3.600 -27.932 0.000 0.000 0.000 0.000 [ MATL 19 ] 90 - G - + - ML 57 56 3 59 3 19 38 344 724 -19.472 -0.001 -9.948 -5.965 -8.461 1.992 -8.494 D 58 56 3 59 3 16 35 342 721 -23.587 -1.346 -0.721 IL 59 59 3 59 3 20 39 348 727 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 91 - U - + - ML 60 59 3 62 3 18 37 343 723 -0.786 -1.251 -13.222 -1.865 -0.131 -1.144 1.239 D 61 59 3 62 3 15 34 341 720 -22.999 -0.076 -4.278 IL 62 62 3 62 3 18 37 343 723 -0.981 -1.020 -29.679 0.000 0.000 0.000 0.000 [ MATL 21 ] 109 - A - + - ML 63 62 3 65 3 17 35 341 721 -4.432 -0.094 -5.889 1.657 -2.658 -0.826 -3.003 D 64 62 3 65 3 13 31 335 715 -18.956 -2.309 -0.325 IL 65 65 3 65 3 20 38 364 743 -0.099 -3.917 -28.946 0.000 0.000 0.000 0.000 [ MATL 22 ] 131 - G - = - ML 66 65 3 68 3 17 34 338 717 -6.790 -0.024 -7.104 0.510 -3.166 1.198 -2.549 D 67 65 3 68 3 13 31 335 715 -23.619 -2.051 -0.398 IL 68 68 3 68 3 17 35 339 719 -0.806 -1.224 -23.871 0.000 0.000 0.000 0.000 [ MATL 23 ] 135 - a - = - ML 69 68 3 71 3 16 33 337 716 -6.825 -0.013 -12.053 0.837 -0.392 0.341 -2.436 D 70 68 3 71 3 13 31 334 714 -23.844 -1.989 -0.419 IL 71 71 3 71 3 16 34 337 717 -2.042 -0.401 -23.009 0.000 0.000 0.000 0.000 [ MATL 24 ] 138 - G - = - ML 72 71 3 74 3 15 32 336 715 -6.375 -0.019 -10.317 -0.118 -1.401 1.254 -1.669 D 73 71 3 74 3 13 30 334 713 -23.447 -2.016 -0.410 IL 74 74 3 74 3 15 33 336 716 -2.041 -0.402 -23.466 0.000 0.000 0.000 0.000 [ MATL 25 ] 141 - C - = - ML 75 74 3 77 3 14 31 335 714 -8.584 -0.017 -6.740 -3.295 1.565 -1.496 -0.772 D 76 74 3 77 3 12 30 334 713 -23.130 -0.036 -5.356 IL 77 77 3 77 3 15 32 335 714 -13.216 -0.000 -20.860 0.000 0.000 0.000 0.000 [ MATL 26 ] 143 - a - + - ML 78 77 3 80 3 14 31 334 713 -6.323 -0.019 -11.200 0.883 -1.479 0.759 -3.249 D 79 77 3 80 3 10 27 332 712 -22.751 -0.268 -2.562 IL 80 80 3 80 3 14 31 335 714 -0.950 -1.052 -24.178 0.000 0.000 0.000 0.000 [ MATL 27 ] 148 - C - = - ML 81 80 3 83 3 13 30 333 712 -6.975 -0.023 -7.014 -0.984 1.040 -0.574 -0.384 D 82 80 3 83 3 9 25 328 708 -20.523 -2.911 -0.206 IL 83 83 3 83 3 14 30 333 712 -14.841 -0.000 -22.485 0.000 0.000 0.000 0.000 [ MATL 28 ] 150 - C - = - ML 84 83 3 86 3 13 29 332 711 -7.897 -0.010 -8.473 -1.592 1.152 -1.420 0.101 D 85 83 3 86 3 9 24 328 707 -22.743 -8.336 -0.004 IL 86 86 3 86 3 13 29 332 711 -13.908 -0.000 -21.552 0.000 0.000 0.000 0.000 [ MATL 29 ] 152 - g - = - ML 87 86 3 89 3 12 28 331 710 -5.694 -0.074 -5.018 -0.490 -0.975 0.713 0.189 D 88 86 3 89 3 9 24 328 707 -23.111 -2.146 -0.370 IL 89 89 3 89 3 15 31 334 714 -0.377 -2.122 -25.872 0.000 0.000 0.000 0.000 [ MATL 30 ] 159 - G - = - ML 90 89 3 92 3 13 28 330 709 -5.582 -0.033 -9.152 -5.210 0.065 1.518 -3.993 D 91 89 3 92 3 9 24 327 707 -24.817 -1.527 -0.615 IL 92 92 3 92 3 13 29 330 709 -2.860 -0.214 -24.035 0.000 0.000 0.000 0.000 [ MATL 31 ] 162 - c - = - ML 93 92 3 95 3 12 28 329 708 -6.041 -0.023 -10.447 0.038 0.647 -0.563 -0.454 D 94 92 3 95 3 8 24 326 706 -24.293 -0.631 -1.496 IL 95 95 3 95 3 14 29 335 715 -0.246 -2.676 -26.056 0.000 0.000 0.000 0.000 [ MATL 32 ] 171 - C - + - ML 96 95 3 98 3 11 27 327 707 -19.481 -0.005 -8.272 -3.223 1.340 -5.326 0.418 D 97 95 3 98 3 8 23 324 704 -22.895 -0.801 -1.230 IL 98 98 3 98 3 11 27 331 711 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 172 - U - + - ML 99 98 3 101 3 11 26 326 706 -4.738 -0.055 -19.485 -4.446 -3.966 -4.446 1.943 D 100 98 3 101 3 7 22 321 701 -22.441 -0.264 -2.583 IL 101 101 3 101 3 13 28 359 737 -0.086 -4.118 -28.830 0.000 0.000 0.000 0.000 [ MATL 34 ] 193 - u - * - ML 102 101 3 104 3 10 25 322 702 -19.495 -0.000 -19.495 -0.102 -0.039 0.025 0.107 D 103 101 3 104 3 6 20 318 698 -19.860 -1.189 -0.833 IL 104 104 3 104 3 10 25 325 705 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 194 - u - * - ML 105 104 3 107 3 9 24 321 701 -5.098 -0.058 -6.591 -0.102 -0.000 -0.007 0.102 D 106 104 3 107 3 6 20 316 696 -19.029 -2.341 -0.317 IL 107 107 3 107 3 12 26 339 720 -0.112 -3.743 -28.107 0.000 0.000 0.000 0.000 [ MATL 36 ] 209 - a - * - ML 108 107 3 110 3 10 23 319 699 -6.102 -0.021 -12.531 0.324 -0.178 -0.129 -0.074 D 109 107 3 110 3 6 19 315 695 -22.949 -9.658 -0.002 IL 110 110 3 110 3 10 24 324 704 -0.287 -2.473 -25.818 0.000 0.000 0.000 0.000 [ MATL 37 ] 216 - A - + - ML 111 110 3 113 3 9 22 318 698 -6.019 -0.022 -15.332 1.788 -5.079 -0.991 -6.264 D 112 110 3 113 3 6 19 315 695 -22.969 -5.050 -0.044 IL 113 113 3 113 3 9 23 322 702 -0.328 -2.297 -25.724 0.000 0.000 0.000 0.000 [ MATL 38 ] 223 - A - + - ML 114 113 3 116 3 8 21 316 697 -4.322 -0.084 -7.273 1.648 -0.838 -4.019 -2.026 D 115 113 3 116 3 6 19 315 695 -22.928 -0.078 -4.242 IL 116 116 3 116 3 9 22 323 703 -0.230 -2.760 -27.885 0.000 0.000 0.000 0.000 [ MATL 39 ] 238 - g - = - ML 117 116 3 119 3 7 20 315 695 -6.743 -0.047 -5.466 -0.508 -0.525 0.686 -0.010 D 118 116 3 119 3 5 17 313 694 -22.297 -0.371 -2.141 IL 119 119 3 119 3 9 21 316 696 -0.977 -1.023 -23.732 0.000 0.000 0.000 0.000 [ MATL 40 ] 242 - C - = - ML 120 119 3 122 3 7 19 314 694 -5.719 -0.032 -8.376 -2.851 1.400 -0.078 -1.868 D 121 119 3 122 3 4 16 311 692 -24.084 -2.560 -0.268 IL 122 122 3 122 3 8 20 314 694 -2.165 -0.364 -24.072 0.000 0.000 0.000 0.000 [ MATL 41 ] 245 - c - = - ML 123 122 3 125 3 7 18 313 693 -8.208 -0.007 -9.591 0.082 0.736 -0.842 -0.479 D 124 122 3 125 3 4 16 311 691 -24.014 -2.520 -0.276 IL 125 125 3 125 3 7 18 313 693 -13.577 -0.000 -21.220 0.000 0.000 0.000 0.000 [ MATL 42 ] 247 - G - = - ML 126 125 3 128 3 6 17 312 692 -6.203 -0.020 -17.373 -0.074 -1.827 1.252 -1.375 D 127 125 3 128 3 4 16 311 691 -23.831 -0.275 -2.526 IL 128 128 3 128 3 6 18 313 693 -1.312 -0.744 -23.973 0.000 0.000 0.000 0.000 [ MATL 43 ] 251 - G - = - ML 129 128 3 131 3 5 16 311 691 -19.492 -0.000 -18.195 -0.372 -1.707 1.010 -0.142 D 130 128 3 131 3 3 15 310 691 -21.307 -0.398 -2.054 IL 131 131 3 131 3 5 17 315 695 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 252 - a - + - ML 132 131 3 134 3 4 15 310 690 -7.339 -0.421 -2.018 0.547 -0.705 -0.098 -0.013 D 133 131 3 134 3 2 14 311 692 -19.259 -7.768 -0.007 IL 134 134 3 134 3 4 16 311 691 -0.585 -1.585 -23.707 0.000 0.000 0.000 0.000 [ MATL 45 ] 256 - G - + - ML 135 134 3 137 3 3 14 308 688 -4.471 -2.557 -0.349 0.137 -4.252 1.368 -1.905 D 136 134 3 137 3 2 14 311 692 -27.448 -0.499 -1.773 IL 137 137 3 137 3 5 18 315 695 -2.152 -0.368 -24.949 0.000 0.000 0.000 0.000 [ MATL 46 ] 260 - G - = - ML 138 137 3 140 3 4 17 314 694 -4.522 -0.095 -5.652 -0.001 -1.518 1.135 -1.135 D 139 137 3 140 3 2 13 305 685 -28.870 -7.488 -0.008 IL 140 140 3 140 3 6 18 315 695 -0.828 -1.196 -24.567 0.000 0.000 0.000 0.000 [ MATL 47 ] 264 - g - = - ML 141 140 3 143 3 4 16 313 693 -17.914 -0.017 -6.423 -1.300 -0.327 0.658 0.286 D 142 140 3 143 3 2 13 304 685 -28.876 -9.319 -0.002 IL 143 143 3 143 3 5 18 316 697 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 266 - g - = - ML 144 143 3 146 3 3 16 312 692 -4.852 -0.312 -2.645 -0.135 0.150 0.322 -0.455 D 145 143 3 146 3 2 13 304 685 -28.882 -8.205 -0.005 IL 146 146 3 146 3 5 18 316 696 -0.451 -1.897 -24.912 0.000 0.000 0.000 0.000 [ MATL 49 ] 271 - c - = - ML 147 146 3 149 3 4 16 312 692 -5.719 -0.202 -3.161 -2.597 0.770 0.646 -0.825 D 148 146 3 149 3 2 13 304 685 -28.988 -8.186 -0.005 IL 149 149 3 149 3 5 17 313 693 -1.186 -0.835 -22.744 0.000 0.000 0.000 0.000 [ MATL 50 ] 274 - G - = - ML 150 149 3 152 3 4 16 311 692 -4.746 -0.174 -3.717 -1.636 -0.598 1.275 -0.741 D 151 149 3 152 3 2 13 304 685 -29.044 -11.841 -0.000 IL 152 152 3 152 3 5 17 314 694 -0.586 -1.584 -24.309 0.000 0.000 0.000 0.000 [ MATL 51 ] 279 - g - = - ML 153 152 3 155 3 3 15 311 691 -4.783 -0.694 -1.533 -0.615 -0.202 0.955 -0.892 D 154 152 3 155 3 2 13 304 685 -29.080 -5.781 -0.026 IL 155 155 3 155 3 8 20 315 695 -0.535 -1.690 -24.265 0.000 0.000 0.000 0.000 [ MATL 52 ] 284 - c - = - ML 156 155 3 158 3 7 18 312 692 -2.775 -0.228 -13.632 -2.724 0.923 -1.073 0.563 D 157 155 3 158 3 2 13 304 684 -29.200 -2.116 -0.378 IL 158 158 3 158 3 7 20 316 697 -0.264 -2.579 -26.677 0.000 0.000 0.000 0.000 [ MATL 53 ] 294 - G - + - ML 159 158 3 161 3 6 17 310 690 -5.157 -0.041 -15.377 -2.186 -1.539 1.185 0.217 D 160 158 3 161 3 2 13 302 683 -28.822 -10.386 -0.001 IL 161 161 3 161 3 6 19 314 694 -0.322 -2.322 -25.147 0.000 0.000 0.000 0.000 [ MATL 54 ] 300 - u - + - ML 162 161 3 164 3 5 16 308 689 -18.019 -0.001 -10.043 -0.114 0.079 -3.054 0.926 D 163 161 3 164 3 2 13 302 683 -28.821 -15.786 -0.000 IL 164 164 3 164 3 5 17 312 692 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 301 - A - + - ML 165 164 3 167 3 4 15 307 688 -2.634 -0.411 -3.527 1.165 -0.272 -1.675 -0.697 D 166 164 3 167 3 2 13 302 683 -28.822 -8.337 -0.004 IL 167 167 3 167 3 4 16 308 688 -1.651 -0.553 -25.902 0.000 0.000 0.000 0.000 [ MATL 56 ] 306 - A - + - ML 168 167 3 170 3 3 15 307 687 -1.368 -2.723 -1.116 1.261 -1.491 -0.401 -1.030 D 169 167 3 170 3 2 13 302 683 -28.886 -5.901 -0.024 IL 170 170 3 170 3 5 17 308 689 -3.412 -0.142 -26.635 0.000 0.000 0.000 0.000 [ MATL 57 ] 310 - g - = - ML 171 170 3 173 3 4 16 307 687 -6.537 -0.140 -3.616 0.070 -0.766 0.693 -0.423 D 172 170 3 173 3 2 13 302 682 -29.161 -3.449 -0.139 IL 173 173 3 173 3 6 18 308 688 -12.875 -0.000 -20.519 0.000 0.000 0.000 0.000 [ MATL 58 ] 312 - c - = - ML 174 173 3 176 3 5 17 307 687 -5.020 -0.049 -8.559 -1.650 0.919 -0.008 -0.330 D 175 173 3 176 3 2 13 302 682 -29.052 -5.307 -0.037 IL 176 176 3 176 3 6 18 308 688 -0.799 -1.234 -23.662 0.000 0.000 0.000 0.000 [ MATL 59 ] 316 - u - = - ML 177 176 3 179 3 5 16 306 686 -4.785 -0.054 -10.959 -2.632 0.442 0.018 0.553 D 178 176 3 179 3 2 13 302 682 -29.016 -4.540 -0.063 IL 179 179 3 179 3 5 17 306 687 -1.039 -0.962 -23.728 0.000 0.000 0.000 0.000 [ MATL 60 ] 320 - g - = - ML 180 179 3 182 3 4 15 304 685 -7.070 -0.140 -3.559 -1.182 0.447 0.807 -1.161 D 181 179 3 182 3 2 13 301 682 -28.953 -4.182 -0.082 IL 182 182 3 182 3 5 16 305 685 -12.998 -0.000 -20.642 0.000 0.000 0.000 0.000 [ MATL 61 ] 322 - g - = - ML 183 182 3 185 3 4 15 304 684 -17.811 -0.001 -9.970 -2.242 -0.043 0.541 0.446 D 184 182 3 185 3 2 12 301 682 -28.925 -4.594 -0.061 IL 185 185 3 185 3 4 16 307 687 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 323 - c - = - ML 186 185 3 188 3 3 14 303 683 -5.136 -0.054 -6.909 0.303 0.491 -0.186 -1.053 D 187 185 3 188 3 2 12 301 681 -28.865 -12.887 -0.000 IL 188 188 3 188 3 3 14 303 683 -1.481 -0.640 -23.406 0.000 0.000 0.000 0.000 [ MATL 63 ] 327 - c - = - ML 189 188 3 191 3 2 13 302 682 -17.925 -0.783 -1.256 -1.939 0.838 -0.398 0.255 D 190 188 3 191 3 2 12 301 681 -28.871 -0.006 -7.817 IL 191 191 3 191 3 3 15 306 686 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 328 - G - + - ML 192 191 3 194 3 2 12 301 682 -0.350 -2.258 -7.271 -0.584 -3.070 1.443 -1.018 D 193 191 3 194 3 1 11 299 680 -26.664 -0.010 -7.176 IL 194 194 3 194 3 3 12 301 681 -6.571 -0.015 -28.904 0.000 0.000 0.000 0.000 [ MATL 65 ] 332 - C - + - ML 195 194 3 197 3 2 11 300 680 -19.487 -0.002 -9.188 -4.560 1.397 -1.025 -0.263 D 196 194 3 197 3 0 7 298 678 -22.206 -0.142 -3.419 IL 197 197 3 197 3 1 11 303 683 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 333 - G - = - ML 198 197 3 200 3 2 11 299 679 -8.612 -0.004 -13.061 -1.001 -2.237 1.687 -3.850 D 199 197 3 200 3 0 6 293 674 -20.708 -5.038 -0.045 IL 200 200 3 200 3 2 11 299 679 -13.203 -0.000 -20.847 0.000 0.000 0.000 0.000 [ MATL 67 ] 335 - c - = - ML 201 200 3 203 3 1 10 298 678 -8.488 -0.005 -9.990 -0.888 0.930 -0.491 -0.245 D 202 200 3 203 3 0 6 293 673 -20.736 -0.454 -1.890 IL 203 203 3 203 3 2 10 298 678 -13.327 -0.000 -20.971 0.000 0.000 0.000 0.000 [ MATL 68 ] 337 - G - = - ML 204 203 3 206 3 1 9 297 677 -4.805 -0.054 -10.284 0.114 -1.057 1.092 -1.713 D 205 203 3 206 3 0 5 280 661 -20.191 -1.698 -0.532 IL 206 206 3 206 3 3 10 297 677 -1.374 -0.703 -25.358 0.000 0.000 0.000 0.000 [ MATL 69 ] 342 - G - = - ML 207 206 3 209 3 2 9 295 676 -8.356 -0.004 -14.585 -0.490 -3.861 1.672 -4.972 D 208 206 3 209 3 0 5 267 647 -20.438 -2.045 -0.400 IL 209 209 3 209 3 2 9 295 676 -13.459 -0.000 -21.103 0.000 0.000 0.000 0.000 [ MATL 70 ] 344 - G - = - ML 210 209 3 212 3 1 8 294 675 -6.127 -0.076 -4.765 -4.418 -8.463 1.974 -5.602 D 211 209 3 212 3 0 5 217 597 -20.077 -5.713 -0.028 IL 212 212 3 212 3 2 10 298 679 -0.419 -1.987 -25.320 0.000 0.000 0.000 0.000 [ MATL 71 ] 350 - U - + - ML 213 212 3 215 3 1 8 294 674 -8.500 -0.021 -6.446 -5.795 -6.279 -7.169 1.986 D 214 212 3 215 3 0 5 184 564 -24.752 -7.635 -0.007 IL 215 215 3 215 3 3 9 294 675 -13.262 -0.000 -20.906 0.000 0.000 0.000 0.000 [ MATL 72 ] 352 - U - + - ML 216 215 3 218 3 2 8 293 674 -4.307 -0.075 -19.424 -2.419 -7.202 -4.844 1.915 D 217 215 3 218 3 0 5 124 375 -25.112 -0.811 -1.217 IL 218 218 3 218 3 3 10 354 734 -0.070 -4.402 -29.485 0.000 0.000 0.000 0.000 [ MATL 73 ] 377 - C - + - ML 219 218 3 221 3 1 7 125 270 -5.199 -0.040 -12.629 -5.521 1.910 -2.996 -3.387 D 220 218 3 221 3 0 5 121 266 -23.895 -1.539 -0.609 IL 221 221 3 221 3 3 9 143 288 -0.199 -2.959 -27.192 0.000 0.000 0.000 0.000 [ MATL 74 ] 389 - G - + - ML 222 221 3 224 3 2 6 121 267 -6.775 -0.013 -19.476 -0.240 -5.290 1.636 -5.666 D 223 221 3 224 3 0 5 120 266 -23.303 -0.144 -3.395 IL 224 224 3 224 3 2 7 123 269 -0.699 -1.381 -24.047 0.000 0.000 0.000 0.000 [ MATL 75 ] 394 - A - + - ML 225 224 3 227 3 1 5 120 266 -6.974 -0.012 -15.499 1.972 -5.845 -4.573 -5.884 D 226 224 3 227 3 0 3 118 264 -19.909 -1.450 -0.657 IL 227 227 3 227 3 2 6 122 268 -0.776 -1.265 -23.751 0.000 0.000 0.000 0.000 [ MATL 76 ] 399 - a - + - ML 228 227 3 230 3 1 4 119 265 -8.604 -0.011 -7.694 0.921 -1.371 -0.159 -0.278 D 229 227 3 230 3 0 3 118 263 -19.288 -0.084 -4.139 IL 230 230 3 230 3 1 4 119 265 -2.975 -0.196 -21.052 0.000 0.000 0.000 0.000 [ MATL 77 ] 402 - U - + - ML 231 230 3 233 3 1 3 118 264 -4.685 -0.063 -8.046 -3.996 -1.674 -7.086 1.855 D 232 230 3 233 3 0 2 32 169 -21.782 -0.007 -7.757 IL 233 233 3 233 3 1 5 143 289 -0.183 -3.073 -27.843 0.000 0.000 0.000 0.000 [ MATL 78 ] 416 - C - = - ML 234 233 3 236 3 1 2 31 100 -8.596 -0.018 -6.658 -7.810 1.965 -3.638 -6.425 D 235 233 3 236 3 0 0 30 99 -21.418 -0.171 -3.162 IL 236 236 3 236 3 1 4 31 100 -13.217 -0.000 -20.860 0.000 0.000 0.000 0.000 [ MATL 79 ] 418 - C - = - ML 237 236 3 239 3 1 3 30 99 -8.107 -0.005 -13.983 -5.233 1.695 -4.814 -0.512 D 238 236 3 239 3 0 0 29 98 -22.860 -0.033 -5.462 IL 239 239 3 239 3 1 4 32 100 -1.358 -0.714 -22.053 0.000 0.000 0.000 0.000 [ MATL 80 ] 421 - c - = - ML 240 239 3 242 3 1 3 29 98 -6.633 -0.015 -15.184 -1.825 0.892 -0.979 0.438 D 241 239 3 242 3 0 0 27 96 -17.733 -1.748 -0.510 IL 242 242 3 242 3 1 3 29 98 -2.189 -0.357 -23.186 0.000 0.000 0.000 0.000 [ MATL 81 ] 424 - G - = - ML 243 242 3 245 3 1 2 28 97 -8.395 -0.004 -14.995 -0.593 -1.021 1.046 -0.359 D 244 242 3 245 3 0 0 26 95 -17.400 -0.596 -1.563 IL 245 245 3 245 3 1 2 28 97 -10.554 -0.001 -21.067 0.000 0.000 0.000 0.000 [ MATL 82 ] 427 - C - = - ML 246 245 3 248 3 1 1 27 96 -4.723 -0.061 -8.180 -4.012 1.196 -2.331 0.534 D 247 245 3 248 3 0 0 25 95 -16.309 -0.057 -4.687 IL 248 248 3 248 3 1 2 27 96 -2.914 -0.205 -24.945 0.000 0.000 0.000 0.000 [ MATL 83 ] 431 - C - = - ML 249 248 3 251 3 1 1 25 95 -6.739 -0.019 -8.008 -0.438 1.059 -3.179 0.094 D 250 248 3 251 3 0 0 24 93 -21.284 -0.936 -1.067 IL 251 251 3 251 3 1 2 25 95 -15.075 -0.000 -22.719 0.000 0.000 0.000 0.000 [ MATL 84 ] 433 - g - = - ML 252 251 3 254 3 1 1 24 94 -7.276 -0.010 -12.399 -0.581 0.212 0.236 -0.006 D 253 251 3 254 3 0 0 23 92 -21.961 -0.920 -1.085 IL 254 254 3 254 3 1 2 25 94 -1.794 -0.491 -22.669 0.000 0.000 0.000 0.000 [ MATL 85 ] 436 - g - = - ML 255 254 3 257 3 1 1 23 93 -7.406 -0.009 -11.168 -1.535 0.236 0.659 -0.155 D 256 254 3 257 3 0 0 21 90 -20.974 -1.239 -0.795 IL 257 257 3 257 3 1 2 23 93 -14.408 -0.000 -22.052 0.000 0.000 0.000 0.000 [ MATL 86 ] 438 - c - = - ML 258 257 3 260 3 1 1 22 92 -8.359 -0.006 -9.771 -1.247 0.970 0.053 -0.779 D 259 257 3 260 3 0 0 20 89 -20.524 -1.467 -0.648 IL 260 260 3 260 3 1 1 22 92 -13.456 -0.000 -21.100 0.000 0.000 0.000 0.000 [ MATL 87 ] 440 - c - = - ML 261 260 3 263 3 1 1 21 91 -8.612 -0.009 -8.231 -2.476 0.528 -0.050 0.498 D 262 260 3 263 3 0 0 18 87 -20.786 -1.077 -0.927 IL 263 263 3 263 3 1 1 21 91 -13.202 -0.000 -20.846 0.000 0.000 0.000 0.000 [ MATL 88 ] 442 - c - = - ML 264 263 3 266 3 1 1 20 90 -8.530 -0.004 -18.227 -3.838 0.996 0.521 -0.998 D 265 263 3 266 3 0 0 12 81 -21.700 -3.114 -0.177 IL 266 266 3 266 3 1 1 20 90 -13.281 -0.000 -20.925 0.000 0.000 0.000 0.000 [ MATL 89 ] 444 - C - = - ML 267 266 3 269 3 1 1 19 89 -4.720 -0.131 -4.364 -2.292 1.637 -2.024 -1.182 D 268 266 3 269 3 0 0 5 71 -21.524 -7.192 -0.010 IL 269 269 3 269 3 1 2 20 89 -3.880 -0.101 -24.838 0.000 0.000 0.000 0.000 [ MATL 90 ] 447 - a - + - ML 270 269 3 272 3 1 1 19 88 -19.419 -0.628 -1.502 0.983 -2.279 0.273 -0.717 D 271 269 3 272 3 0 0 3 68 -25.209 -11.577 -0.000 IL 272 272 3 272 3 1 1 64 133 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 91 ] 448 - C - * - ML 273 272 3 275 3 1 1 18 87 -18.791 -0.000 -18.791 -16.908 2.000 -16.928 -17.765 D 274 272 3 275 3 0 0 2 61 -28.092 -18.127 -0.000 IL 275 275 3 275 3 1 1 63 132 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 92 ] 449 - C - * - ML 276 275 3 278 3 1 1 14 83 -18.791 -0.000 -18.791 -16.908 2.000 -16.928 -17.765 D 277 275 3 278 3 0 0 1 58 -28.092 -18.127 -0.000 IL 278 278 3 278 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 93 ] 450 - A - * - ML 279 278 3 281 2 1 1 1 1 * 0.000 2.000 -18.526 -16.943 -18.112 D 280 278 3 281 2 0 0 0 0 * 0.000 IL 281 281 3 281 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 94 ] - - - - - - E 282 281 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-030216 LENG 93 MAXL 364 ALPH RNA RF yes MM no CONS yes CS yes MAP no DATE Wed Mar 2 10:51:10 2016 COM [1] cmbuild -F --enone --noss --hand bact-ns-030216.cm bact-030216.sto COM [2] cmbuild -F --enone --noss --hand bact-ns-030216.cm bact-030216.sto NSEQ 73969 EFFN 73969.000000 STATS LOCAL MSV -8.6892 0.71661 STATS LOCAL VITERBI -9.9083 0.71661 STATS LOCAL FORWARD -3.3123 0.71661 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56315 1.31244 1.18404 1.53562 1.38629 1.38629 1.38629 1.38629 0.03084 14.76865 3.49436 0.39730 1.11515 0.00000 * 1 2.69798 2.51228 0.20339 3.33499 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00303 6.04177 7.34083 0.00012 9.05042 0.93072 0.50132 2 2.51411 1.06054 0.61361 3.46086 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00776 5.01218 6.83485 0.00004 10.09192 2.30864 0.10469 3 1.19652 1.46977 0.86758 3.04055 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01576 4.71622 5.00794 0.20067 1.70477 2.51110 0.08466 4 1.97713 1.43082 0.69261 2.10248 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00792 5.20616 6.03049 0.45841 1.00045 2.38937 0.09617 5 1.58617 0.97980 1.16222 2.23386 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00622 6.00634 5.58975 0.00011 9.09294 1.84921 0.17122 6 1.41198 1.50754 1.22190 1.42621 - g = - : 1.38629 1.38629 1.38629 1.38629 0.03562 3.43919 5.84092 0.53401 0.88249 0.78635 0.60789 7 1.78409 3.71170 0.47003 1.70030 - G = - : 1.38629 1.38629 1.38629 1.38629 0.05148 3.37876 4.12990 0.52528 0.89500 2.22997 0.11376 8 3.48615 4.72457 3.50095 0.07221 - U + - : 1.38629 1.38629 1.38629 1.38629 0.02049 4.21950 5.19008 1.20672 0.35550 0.01362 4.30304 9 0.52917 3.12549 1.23724 2.56644 - A + - : 1.38629 1.38629 1.38629 1.38629 0.02453 5.31384 3.94700 0.38550 1.13978 0.02013 3.91559 10 2.63481 2.43903 0.20153 3.74881 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01805 4.21600 5.76564 0.47148 0.97838 1.23365 0.34422 11 2.67275 0.54257 2.32928 1.37707 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01448 5.12038 4.77941 0.50742 0.92142 3.47999 0.03129 12 3.24041 1.42757 1.60959 0.65202 - U = - : 1.38629 1.38629 1.38629 1.38629 0.00992 5.49533 5.15622 0.00007 9.60307 0.90661 0.51733 13 2.12206 0.60751 1.66565 1.92110 - C = - : 1.38629 1.38629 1.38629 1.38629 0.03136 3.55471 6.08031 1.71462 0.19849 0.69418 0.69211 14 0.13212 2.92227 4.28202 2.87989 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00768 13.50158 4.87378 1.46634 0.26236 0.96212 0.48140 15 1.34357 2.52521 0.45314 3.75414 - G + - : 1.38629 1.38629 1.38629 1.38629 0.01435 13.49872 4.25104 1.46634 0.26236 1.17396 0.36982 16 2.85799 1.19374 2.99521 0.52847 - U + - : 1.38629 1.38629 1.38629 1.38629 0.65522 3.43681 0.80184 2.70805 0.06899 7.12728 0.00080 17 2.99429 1.59919 4.70613 0.30269 - U + - : 1.38629 1.38629 1.38629 1.38629 0.28191 1.41004 6.48736 0.65261 0.73539 0.03497 3.37063 18 4.26177 6.09340 0.04254 3.67716 - G + - : 1.38629 1.38629 1.38629 1.38629 0.03215 3.53940 5.94962 2.49562 0.08604 2.01758 0.14269 19 5.52126 7.25105 0.00542 7.27367 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00101 13.49684 6.89519 1.46634 0.26236 0.93271 0.50003 20 2.67933 1.47686 2.17913 0.52781 - U + - : 1.38629 1.38629 1.38629 1.38629 0.86738 0.54499 9.16455 0.70667 0.67981 0.05292 2.96536 21 0.23800 3.22873 1.95895 3.46775 - A + - : 1.38629 1.38629 1.38629 1.38629 0.06528 3.07217 4.08200 2.71492 0.06850 1.60013 0.22548 22 1.03277 3.58091 0.55616 3.15301 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01644 4.70624 4.92412 0.84851 0.55870 1.42172 0.27615 23 0.80599 1.65797 1.15004 3.07468 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00910 4.73064 8.35481 0.27824 1.41517 1.37866 0.29024 24 1.46775 2.35719 0.51706 2.54340 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01291 4.41908 7.15149 0.27845 1.41453 1.39723 0.28406 25 3.67020 0.30173 2.42329 1.92166 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01203 5.95017 4.67190 0.00011 9.16042 0.02472 3.71260 26 0.77449 2.41170 0.86015 3.63812 - a + - : 1.38629 1.38629 1.38629 1.38629 0.01300 4.38248 7.76334 0.72936 0.65820 0.18557 1.77569 27 2.06821 0.66532 1.78398 1.65281 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01581 4.83448 4.86172 0.00003 10.28681 2.01747 0.14271 28 2.48978 0.58796 2.37071 1.31604 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00703 5.47363 5.87324 0.00007 9.64006 5.77828 0.00310 29 1.72575 2.06227 0.89223 1.25508 - g = - : 1.38629 1.38629 1.38629 1.38629 0.05148 3.94688 3.47827 1.47076 0.26104 1.48744 0.25612 30 4.99766 1.34104 0.33412 4.15376 - G = - : 1.38629 1.38629 1.38629 1.38629 0.02289 3.86927 6.34338 0.14818 1.98248 1.05845 0.42617 31 1.35979 0.93762 1.77672 1.70081 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01603 4.18747 7.24110 1.85476 0.17018 0.43766 1.03717 32 3.62059 0.45718 5.07787 1.09682 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00324 13.50342 5.73343 1.46634 0.26236 0.55553 0.85277 33 4.46776 4.13526 4.46793 0.03972 - U + - : 1.38629 1.38629 1.38629 1.38629 0.03818 3.28447 13.50630 2.85411 0.05933 0.18266 1.79009 34 1.45714 1.41300 1.36865 1.31216 - u * - : 1.38629 1.38629 1.38629 1.38629 0.00000 13.51273 13.51273 1.46634 0.26236 0.82395 0.57749 35 1.45697 1.38659 1.39110 1.31553 - u * - : 1.38629 1.38629 1.38629 1.38629 0.04038 3.53357 4.56844 2.59470 0.07760 1.62259 0.21988 36 1.16149 1.50993 1.47578 1.43778 - a * - : 1.38629 1.38629 1.38629 1.38629 0.01484 4.22928 8.68582 1.71406 0.19861 6.69436 0.00124 37 0.14671 4.90647 2.07301 5.72844 - A + - : 1.38629 1.38629 1.38629 1.38629 0.01556 4.17235 10.62701 1.59207 0.22753 3.50052 0.03065 38 0.24421 1.96719 4.17194 2.79032 - A + - : 1.38629 1.38629 1.38629 1.38629 0.05812 2.99568 5.04158 1.91339 0.15968 0.05429 2.94037 39 1.73813 1.75047 0.91080 1.39328 - g = - : 1.38629 1.38629 1.38629 1.38629 0.03248 4.67407 3.78895 0.70914 0.67740 0.25707 1.48419 40 3.36254 0.41556 1.44010 2.68128 - C = - : 1.38629 1.38629 1.38629 1.38629 0.02225 3.96382 5.80560 0.25222 1.50091 1.77428 0.18585 41 1.32920 0.87600 1.97013 1.71798 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00469 5.68944 6.64796 0.00008 9.41056 1.74662 0.19160 42 1.43728 2.65237 0.51826 2.33938 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01367 4.29978 12.04205 0.51555 0.90925 0.19066 1.75110 43 1.64407 2.56930 0.68595 1.48454 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00000 13.51051 12.61196 1.46634 0.26236 0.27559 1.42347 44 1.00727 1.87521 1.45389 1.39512 - a + - : 1.38629 1.38629 1.38629 1.38629 0.29180 5.08724 1.39874 1.09862 0.40546 5.38448 0.00460 45 1.29149 4.33343 0.43808 2.70696 - G + - : 1.38629 1.38629 1.38629 1.38629 1.77250 3.09880 0.24209 0.25496 1.49142 0.34606 1.22919 46 1.38687 2.43861 0.59964 2.17287 - G = - : 1.38629 1.38629 1.38629 1.38629 0.06552 3.13415 3.91793 0.82869 0.57380 5.19000 0.00559 47 2.28730 1.61326 0.93051 1.18788 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01173 12.41714 4.45182 1.46634 0.26236 6.45917 0.00157 48 1.47978 1.28237 1.16296 1.70171 - g = - : 1.38629 1.38629 1.38629 1.38629 0.21626 3.36324 1.83351 1.31497 0.31263 5.68745 0.00339 49 3.18635 0.85224 0.93883 1.95804 - c = - : 1.38629 1.38629 1.38629 1.38629 0.14013 3.96402 2.19136 0.57878 0.82230 5.67430 0.00344 50 2.52014 1.80108 0.50273 1.90009 - G = - : 1.38629 1.38629 1.38629 1.38629 0.12028 3.28963 2.57623 1.09767 0.40593 8.20751 0.00027 51 1.81273 1.52662 0.72400 2.00459 - g = - : 1.38629 1.38629 1.38629 1.38629 0.48117 3.31545 1.06240 1.17135 0.37099 4.00696 0.01836 52 3.27466 0.74647 2.12978 0.99623 - c = - : 1.38629 1.38629 1.38629 1.38629 0.15797 1.92381 9.44879 1.78790 0.18310 1.46677 0.26223 53 2.90119 2.45318 0.56488 1.23582 - G + - : 1.38629 1.38629 1.38629 1.38629 0.02846 3.57438 10.65867 1.60944 0.22314 7.19892 0.00075 54 1.46509 1.33184 3.50306 0.74477 - u + - : 1.38629 1.38629 1.38629 1.38629 0.00095 12.48950 6.96120 1.46634 0.26236 10.94227 0.00002 55 0.57899 1.57512 2.54700 1.86927 - A + - : 1.38629 1.38629 1.38629 1.38629 0.28481 1.82592 2.44447 0.38324 1.14460 5.77855 0.00310 56 0.51208 2.41962 1.66415 2.10010 - A + - : 1.38629 1.38629 1.38629 1.38629 1.88745 0.94851 0.77387 0.09863 2.36531 4.09040 0.01687 57 1.33748 1.91717 0.90626 1.67966 - g = - : 1.38629 1.38629 1.38629 1.38629 0.09689 4.53102 2.50620 0.00013 8.92460 2.39082 0.09602 58 2.52980 0.74922 1.39156 1.61495 - c = - : 1.38629 1.38629 1.38629 1.38629 0.03404 3.47965 5.93290 0.85509 0.55381 3.67836 0.02559 59 3.21096 1.07967 1.37396 1.00275 - u = - : 1.38629 1.38629 1.38629 1.38629 0.03746 3.31684 7.59625 0.66652 0.72050 3.14703 0.04393 60 2.20575 1.07678 0.82702 2.19114 - g = - : 1.38629 1.38629 1.38629 1.38629 0.09680 4.90068 2.46724 0.00012 9.00962 2.89846 0.05668 61 2.94027 1.41582 1.01119 1.07694 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00100 12.34569 6.91079 1.46634 0.26236 3.18454 0.04228 62 1.17621 1.04628 1.51507 2.11593 - c = - : 1.38629 1.38629 1.38629 1.38629 0.03745 3.55988 4.78922 0.44372 1.02623 8.93232 0.00013 63 2.73010 0.80561 1.66237 1.20971 - c = - : 1.38629 1.38629 1.38629 1.38629 0.54248 12.42448 0.87062 1.46634 0.26236 0.00445 5.41814 64 1.79080 3.51425 0.38577 2.09172 - G + - : 1.38629 1.38629 1.38629 1.38629 1.56532 0.24271 5.03954 0.01057 4.55471 0.00694 4.97427 65 4.54681 0.41816 2.09666 1.56888 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00172 13.50746 6.36830 1.46634 0.26236 0.09818 2.36962 66 2.08022 2.93689 0.21725 4.05482 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00268 5.96934 9.05318 0.00011 9.15141 3.49178 0.03092 67 2.00202 0.74192 1.72693 1.55632 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00378 5.88320 6.92462 0.00010 9.23753 0.31445 1.31005 68 1.30705 2.11898 0.62932 2.57345 - G = - : 1.38629 1.38629 1.38629 1.38629 0.03725 3.33073 7.12847 0.48751 0.95231 1.17698 0.36847 69 1.72627 4.06282 0.22705 4.83234 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00310 5.79184 10.10930 0.00009 9.32936 1.41727 0.27757 70 4.44857 7.25267 0.01771 5.26920 - G = - : 1.38629 1.38629 1.38629 1.38629 0.05244 4.24691 3.30281 1.37717 0.29074 3.96025 0.01924 71 5.40324 5.73833 6.35522 0.00950 - U + - : 1.38629 1.38629 1.38629 1.38629 0.01434 5.89176 4.46795 0.00010 9.19239 5.29238 0.00504 72 3.06282 6.37850 4.74401 0.05886 - U + - : 1.38629 1.38629 1.38629 1.38629 0.05184 2.98537 13.46374 3.05136 0.04845 0.56245 0.84353 73 5.21292 0.06260 3.46288 3.73419 - C + - : 1.38629 1.38629 1.38629 1.38629 0.02777 3.60345 8.75391 2.05120 0.13763 1.06648 0.42192 74 1.55278 5.05322 0.25228 5.31353 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00917 4.69638 13.49994 0.95704 0.48456 0.09985 2.35356 75 0.01927 5.43748 4.55596 5.46512 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00801 4.83426 10.74283 0.87699 0.53791 1.00520 0.45566 76 0.74812 2.33668 1.49631 1.57919 - a + - : 1.38629 1.38629 1.38629 1.38629 0.00743 5.96418 5.33292 0.13603 2.06216 0.05845 2.86864 77 4.15644 2.54678 6.29823 0.10074 - U + - : 1.38629 1.38629 1.38629 1.38629 0.04359 3.24745 5.57731 2.12994 0.12652 0.00463 5.37675 78 6.79995 0.02440 3.90779 5.83980 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01257 5.95824 4.61466 0.00011 9.16104 0.11843 2.19207 79 5.01323 0.21171 4.72323 1.74143 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00370 5.61940 9.69239 0.49464 0.94108 0.02295 3.78603 80 2.65153 0.76789 2.06487 1.08285 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01015 4.59797 10.52460 0.24763 1.51709 1.21159 0.35343 81 1.79721 2.09396 0.66136 1.63530 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00301 5.81924 10.39346 0.00067 7.31551 0.41316 1.08340 82 4.16746 0.55728 3.00223 1.01593 - C = - : 1.38629 1.38629 1.38629 1.38629 0.04219 3.27366 5.66987 0.14239 2.01955 0.03959 3.24900 83 1.69010 0.65193 3.59002 1.32102 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01334 4.67084 5.55088 0.00003 10.44906 0.64865 0.73972 84 1.78889 1.23969 1.22273 1.39048 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00666 5.04332 8.59418 0.34017 1.24358 0.63739 0.75220 85 2.45012 1.22275 0.92940 1.49385 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00635 5.13364 7.74123 0.00005 9.98686 0.85862 0.55121 86 2.25052 0.71422 1.34942 1.92626 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00420 5.79378 6.77246 0.00009 9.32731 1.01688 0.44898 87 3.10250 1.02048 1.42090 1.04088 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00590 5.96940 5.70562 0.00011 9.15123 0.74639 0.64260 88 4.04668 0.69564 1.02548 2.07833 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00271 5.91251 12.63432 0.00010 9.20597 2.15878 0.12269 89 2.97493 0.25190 2.78941 2.20575 - C = - : 1.38629 1.38629 1.38629 1.38629 0.09050 3.27133 3.02468 0.07032 2.68962 4.98518 0.00686 90 0.70468 2.96597 1.19695 1.88316 - a + - : 1.38629 1.38629 1.38629 1.38629 0.43539 13.46018 1.04133 1.46634 0.26236 8.02424 0.00033 91 13.10623 0.00001 13.11982 13.70024 - C * - : 1.38629 1.38629 1.38629 1.38629 0.00000 13.02482 13.02482 1.46634 0.26236 12.56440 0.00000 92 13.10623 0.00001 13.11982 13.70024 - C * - : 1.38629 1.38629 1.38629 1.38629 0.00000 13.02482 13.02482 1.46634 0.26236 12.56440 0.00000 93 0.00000 14.22760 13.13011 13.94035 - A * - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Asn.cm0000644000543100007160000017247512573631650021140 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Asn-2nd-align STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:49 2015 COM [1] cmbuild --hand --enone Asn-final-vert.cm ../Asn-2nd-align.sto COM [2] cmcalibrate --seed 208 Asn-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 21435537 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.8910 0.71869 ECMLC 0.58959 -8.46437 2.02742 1600000 582994 0.002058 ECMGC 0.31347 -44.50760 -29.75502 1600000 40782 0.009808 ECMLI 0.59830 -7.70471 2.54627 1600000 553053 0.002170 ECMGI 0.31870 -41.78094 -27.35008 1600000 39757 0.010061 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 128 -15.013 -16.259 -0.035 -5.382 IL 1 1 2 1 4 22 44 103 129 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 23 45 104 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - G - + MR 3 2 3 5 5 26 47 102 128 -15.027 -0.000 -14.843 -15.055 -15.946 -3.998 -5.861 1.862 -1.808 D 4 2 3 5 5 19 41 100 126 -10.299 -1.657 -7.925 -0.574 -7.351 IR 5 5 3 5 5 19 41 102 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 U A = = MP 6 5 3 10 6 26 47 101 127 -15.972 -15.911 -0.000 -14.688 -14.968 -15.363 -3.486 -13.275 -12.341 -9.514 -1.054 -12.491 -6.409 -5.021 -12.442 -2.260 -12.564 -11.638 3.903 -12.860 -2.741 -4.019 ML 7 5 3 10 6 18 39 99 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 21 43 100 126 -11.541 -10.270 -0.042 -10.249 -5.382 -8.462 -5.476 -4.992 -6.319 1.976 D 9 5 3 10 6 15 34 97 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 40 100 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 40 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 A U = = MP 12 11 6 16 6 26 45 99 125 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -3.151 -10.698 -12.233 3.873 -14.375 -15.530 -9.832 -12.276 -11.793 -0.618 -12.463 -0.783 -9.757 -13.539 -11.663 -10.832 ML 13 11 6 16 6 18 38 97 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 38 97 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 34 95 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 40 98 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 40 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 G C = = MP 18 17 6 22 6 25 43 97 123 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.066 -3.741 -12.263 0.303 -14.282 -14.314 -9.640 -12.334 -11.772 3.739 -12.390 -1.996 -9.631 -13.202 -0.536 -1.324 ML 19 17 6 22 6 17 38 95 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 37 95 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 33 93 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 39 96 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 39 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 A U = = MP 24 23 6 28 6 23 41 95 121 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.858 -3.226 -11.989 3.541 -13.871 -14.247 -3.200 -12.134 -11.680 0.889 -12.295 0.864 -9.239 -5.807 -4.977 -1.247 ML 25 23 6 28 6 17 37 93 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 37 93 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 33 91 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 38 94 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 38 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 U A = = MP 30 29 6 34 6 21 39 93 119 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -10.606 -10.327 -10.570 0.379 -5.946 -11.356 1.758 -6.626 -10.443 -2.998 -10.931 -7.911 3.207 -10.772 0.895 -4.029 ML 31 29 6 34 6 17 36 91 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 36 91 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 33 89 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 37 92 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 92 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 u a = = MP 36 35 6 40 6 19 37 91 117 -6.304 -15.935 -0.019 -14.712 -14.991 -15.387 -10.069 -6.601 -9.943 2.126 -10.029 -10.605 -0.935 -6.272 -10.193 1.630 -10.533 0.078 2.530 -9.883 -0.256 -1.643 ML 37 35 6 40 6 17 35 90 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 34 90 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 32 88 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 36 90 116 -6.552 -6.815 -0.038 -8.470 -9.246 -8.906 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 90 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = MP 42 41 6 46 4 17 35 89 115 -15.219 -15.426 -0.020 -6.203 -12.687 -10.574 -13.128 1.760 -14.702 -12.460 -9.662 -13.179 -11.832 3.560 -4.153 -1.491 -1.326 -12.553 -11.779 -11.786 ML 43 41 6 46 4 16 34 89 115 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 15 33 88 114 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 32 87 113 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 34 90 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 34 89 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 15 33 87 113 -16.109 -0.002 -9.604 1.874 -3.021 -3.365 -3.137 D 49 47 6 50 3 14 32 86 112 -11.377 -0.027 -5.768 IL 50 50 3 50 3 15 33 88 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 14 32 86 112 -3.865 -0.103 1.450 -5.469 -2.432 0.084 D 52 50 3 53 2 13 31 85 111 -8.705 -0.003 IL 53 53 3 53 2 14 32 86 112 -8.156 -0.005 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 31 85 111 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 47 64 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 47 64 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 29 46 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 12 31 G C = = MP 58 57 1 62 6 2 3 29 46 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.101 -10.643 -12.308 -1.936 -14.291 -0.537 -3.424 -12.372 -11.780 3.078 -12.387 2.688 -9.650 -13.180 -11.539 -3.957 ML 59 57 1 62 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 30 C G = = MP 64 63 6 68 6 2 3 27 44 -15.996 -15.935 -0.008 -14.712 -7.443 -15.387 -13.048 -13.330 -12.365 -9.567 -10.716 -12.510 3.888 -11.631 -12.469 -9.538 -12.589 -11.734 0.106 -12.882 -3.072 -11.271 ML 65 63 6 68 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 29 C G = = MP 70 69 6 74 6 2 3 25 42 -15.988 -15.927 -0.000 -14.703 -14.983 -15.378 -13.040 -13.322 -12.357 -9.558 -4.205 -12.501 3.178 -11.623 -12.461 -9.530 -12.581 -11.726 2.024 -12.874 1.496 -11.263 ML 71 69 6 74 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 24 42 -10.129 -8.858 -0.115 -8.836 -3.970 -7.050 -3.564 -5.009 1.939 -4.304 D 73 69 6 74 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 28 c g = = MP 76 75 6 80 4 2 2 23 40 -15.219 -15.426 -0.053 -4.789 -0.529 -4.081 1.906 -0.538 -1.917 -4.462 2.842 -5.161 -3.309 -0.480 -8.016 -4.369 -0.132 -5.235 -0.247 -0.617 ML 77 75 6 80 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - + - ML 82 81 6 84 3 1 2 21 38 -16.075 -0.000 -14.729 -0.605 -9.951 1.676 -2.768 D 83 81 6 84 3 0 0 17 35 -12.770 -8.283 -0.005 IL 84 84 3 84 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - c - + - ML 85 84 3 87 3 1 1 20 37 -16.075 -0.010 -7.226 -1.032 0.807 -2.557 0.670 D 86 84 3 87 3 0 0 16 35 -12.770 -8.283 -0.005 IL 87 87 3 87 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - + - ML 88 87 3 90 3 1 1 19 36 -16.066 -4.070 -0.089 -1.220 -2.869 -2.747 1.716 D 89 87 3 90 3 0 0 16 34 -13.003 -8.516 -0.004 IL 90 90 3 90 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 21 38 -1.019 -0.983 -10.651 0.242 -3.668 -0.131 0.868 D 92 90 3 93 3 0 0 11 30 -17.463 -0.056 -4.708 IL 93 93 3 93 3 1 1 20 37 -1.570 -0.597 -9.011 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - + - ML 94 93 3 96 3 1 2 11 30 -16.076 -0.000 -14.730 -2.027 -2.411 1.800 -3.583 D 95 93 3 96 3 0 0 12 30 -12.759 -8.272 -0.005 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - + - ML 97 96 3 99 3 1 1 9 28 -16.076 -0.117 -3.678 -0.129 -4.118 1.399 -1.358 D 98 96 3 99 3 0 0 11 29 -12.759 -8.272 -0.005 IL 99 99 3 99 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 8 14 -0.131 -3.527 -14.613 -0.528 -0.691 -4.071 1.394 D 101 99 3 102 3 0 0 6 11 -4.779 -0.057 -8.774 IL 102 102 3 102 3 1 1 7 13 -4.509 -0.065 -13.294 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.589 -3.763 -2.215 1.142 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - + - ML 109 108 2 111 5 1 1 26 45 -5.685 -0.028 -14.877 -15.089 -15.981 0.328 -5.821 1.309 -2.004 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -6.280 -0.029 -7.959 -9.791 -9.065 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 50 u a = = MP 112 111 3 116 6 2 2 25 44 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -10.300 -10.001 -10.300 -0.511 -6.898 -11.143 2.573 -6.904 -10.158 -2.673 -10.671 -0.956 2.951 -10.482 -0.783 -1.544 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 49 U A = = MP 118 117 6 122 6 2 2 23 42 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.044 -13.323 -12.364 -0.225 -10.715 -12.509 1.130 -11.630 -12.467 -9.529 -12.587 -11.719 3.626 -12.880 -0.812 -4.654 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 48 U A = = MP 124 123 6 128 6 2 2 21 40 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.933 -12.818 -12.354 -9.081 -10.829 -12.617 -6.539 -11.674 -12.400 -9.172 -12.578 -0.535 3.878 -12.926 -0.759 -11.229 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 47 A U = = MP 130 129 6 134 6 2 2 19 38 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -4.369 -10.698 -12.233 3.871 -14.373 -15.529 -9.831 -12.276 -11.794 -0.843 -12.463 -3.858 -0.534 -13.539 -11.662 -10.832 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 46 G C = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -12.178 -10.679 -12.415 -0.139 -14.480 -14.119 -9.834 -12.452 -11.809 3.788 -12.414 0.220 -9.807 -13.277 -11.729 -3.238 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.128 -0.000 -14.782 -11.597 1.932 -12.068 -2.436 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -12.797 -5.328 -13.995 1.991 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - U - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 1.956 -11.839 -3.075 -11.314 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.899 -11.672 -11.571 -1.892 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 51 77 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 6 53 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 6 51 77 -16.128 -0.000 -14.782 1.378 -4.456 -0.728 -0.411 D 167 165 2 168 3 0 4 49 75 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - U - + - ML 169 168 3 171 2 1 5 50 76 -16.784 -0.000 -1.693 -4.116 0.580 1.096 D 170 168 3 171 2 0 4 49 75 -8.445 -0.004 IL 171 171 3 171 2 1 5 50 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 49 75 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 53 70 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 69 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 68 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 67 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 66 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 65 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 64 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.432 -15.113 -13.129 -0.000 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - a - + - ML 216 215 6 218 3 1 1 16 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -17.545 -3.499 -0.134 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - A - + - ML 219 218 3 221 3 1 1 11 30 -12.653 -0.238 -2.720 1.526 -6.437 -6.951 0.139 D 220 218 3 221 3 0 0 7 25 -17.412 -12.925 -0.000 IL 221 221 3 221 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - A - + - ML 222 221 3 224 3 1 1 10 28 -12.416 -0.227 -2.782 1.536 -6.093 -6.573 0.104 D 223 221 3 224 3 0 0 5 24 -17.433 -12.946 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - U - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -8.558 -7.647 -9.652 1.997 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 38 64 -16.128 -0.133 -3.502 IL 230 230 2 230 3 1 5 40 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - U - + - ML 231 230 2 233 3 1 5 38 65 -0.010 -7.173 -14.649 -1.838 -2.700 -1.315 1.662 D 232 230 2 233 3 0 3 37 63 -1.844 -0.477 -8.442 IL 233 233 3 233 3 1 4 37 64 -4.538 -0.064 -13.482 0.000 0.000 0.000 0.000 [ MATL 62 ] 74 - U - + - ML 234 233 3 236 5 1 3 36 62 -15.062 -0.065 -14.877 -4.507 -15.981 -1.474 0.116 -9.580 1.353 D 235 233 3 236 5 0 0 35 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 36 63 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 75 97 G C = = MP 237 236 3 241 6 2 7 35 62 -15.931 -5.862 -0.025 -14.647 -14.927 -15.322 -12.812 -10.544 -13.374 1.318 -14.905 -12.313 -9.781 -13.356 -11.805 3.588 -12.178 0.563 -9.953 -12.517 -11.951 -12.009 ML 238 236 3 241 6 1 1 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 2 29 56 -12.915 -11.644 -5.322 -11.623 -0.039 -9.836 -7.134 1.991 -7.596 -6.184 D 240 236 3 241 6 0 0 30 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 34 60 -6.063 -0.034 -9.574 -7.742 -8.848 0.000 0.000 0.000 0.000 [ MATP 64 ] 76 95 u a = = MP 243 242 6 247 6 2 7 33 59 -15.933 -15.872 -0.000 -14.648 -14.928 -15.323 -10.823 -10.537 -10.757 -0.128 -9.565 -11.508 0.693 -10.247 -10.638 -3.168 -11.107 -2.372 2.799 -10.988 1.011 2.065 ML 244 242 6 247 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 26 53 -12.887 -11.616 -7.525 -11.594 -6.728 -0.023 -6.296 -8.054 1.991 -7.055 D 246 242 6 247 6 0 0 28 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 32 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 77 94 G C = = MP 249 248 6 253 6 2 6 31 57 -6.348 -15.872 -0.018 -14.648 -14.928 -15.323 -12.274 -10.596 -12.568 2.692 -14.535 -13.341 -9.774 -12.596 -11.762 3.222 -3.687 -2.994 -9.798 -12.988 -11.739 -11.175 ML 250 248 6 253 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 29 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 24 51 -15.492 -14.190 -9.987 -10.669 -10.687 -0.003 IL 253 253 5 253 6 1 2 30 56 -6.452 -6.715 -0.041 -8.370 -9.146 -8.806 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 30 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 79 93 G C = = MP 255 254 6 259 6 2 5 29 55 -15.933 -15.872 -0.000 -14.648 -14.928 -15.323 -13.728 -1.204 -15.552 -1.484 -15.431 -11.702 -9.791 -15.204 -11.854 3.925 -12.062 -5.829 -10.137 -12.152 -12.213 -14.435 ML 256 254 6 259 6 1 1 28 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 28 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 24 50 -15.492 -14.190 -9.987 -10.669 -10.687 -0.003 IL 259 259 5 259 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 80 92 G C = = MP 261 260 6 265 4 2 3 27 53 -15.155 -15.362 -0.003 -8.871 -13.841 -1.268 -16.063 -3.072 -15.486 -11.661 -9.792 -15.562 -11.858 3.941 -3.268 -8.418 -10.153 -12.125 -12.238 -15.102 ML 262 260 6 265 4 1 1 27 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 26 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 24 50 -10.915 -10.596 -8.612 -0.005 IL 265 265 5 265 4 1 1 28 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 81 - A - + - ML 267 266 6 269 3 1 1 25 51 -4.610 -0.060 -14.716 1.701 -9.773 -1.515 -1.328 D 268 266 6 269 3 0 0 24 50 -13.087 -0.008 -7.479 IL 269 269 3 269 3 1 1 25 51 -6.198 -0.331 -2.387 0.000 0.000 0.000 0.000 [ MATL 69 ] 83 - U - + - ML 270 269 3 272 3 1 1 24 50 -16.117 -0.000 -14.771 -1.544 -5.808 -1.466 1.712 D 271 269 3 272 3 0 0 23 49 -10.591 -0.047 -4.983 IL 272 272 3 272 3 1 1 25 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 84 - C - + - ML 273 272 3 275 3 1 1 23 49 -16.128 -0.000 -14.782 -0.373 1.361 -2.677 -0.993 D 274 272 3 275 3 0 0 21 48 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 24 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 85 - G - + - ML 276 275 3 278 3 1 1 22 48 -5.991 -0.023 -14.782 0.362 -5.696 1.408 -4.570 D 277 275 3 278 3 0 0 20 46 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 22 48 -4.961 -0.054 -7.661 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 21 47 -16.128 -0.000 -14.782 1.808 -9.730 -2.510 -1.639 D 280 278 3 281 3 0 0 19 46 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 22 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - G - + - ML 282 281 3 284 3 1 1 20 46 -5.415 -0.053 -6.273 0.158 -1.777 1.288 -2.731 D 283 281 3 284 3 0 0 18 45 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 24 51 -1.012 -0.993 -9.151 0.000 0.000 0.000 0.000 [ MATL 74 ] 91 - G - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.215 -1.428 1.544 -1.008 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Asn-2nd-align LENG 90 MAXL 167 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:49 2015 COM [1] cmbuild --hand --enone Asn-final-vert.cm ../Asn-2nd-align.sto NSEQ 1086 EFFN 8.380806 CKSUM 21435537 STATS LOCAL MSV -9.2157 0.71869 STATS LOCAL VITERBI -9.3781 0.71869 STATS LOCAL FORWARD -3.9068 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39435 1.61217 1.30129 1.27164 1.38629 1.38629 1.38629 1.38629 0.03125 4.74498 3.81350 1.46634 0.26236 0.00000 * 1 4.68877 3.90032 4.53283 0.04101 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01778 4.73151 4.73151 1.46634 0.26236 0.58107 0.81939 2 0.14496 4.50896 2.21983 4.17959 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 3 1.85325 2.78653 0.38442 2.29467 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 4 0.71520 2.75365 1.01854 2.45237 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 5 2.14411 1.28691 2.26951 0.68648 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 6 1.48475 1.80908 1.29337 1.09276 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02807 3.96409 4.74498 0.75210 0.63747 1.09861 0.40547 7 1.57956 2.94691 0.40238 2.62135 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02874 4.74498 3.93033 1.46634 0.26236 1.09861 0.40547 8 0.18955 2.86319 2.94618 2.76400 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.01877 4.73397 4.62531 1.46634 0.26236 0.63424 0.75574 9 0.54545 2.59117 2.35817 1.38272 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.07576 2.74488 4.74398 0.25187 1.50212 1.02750 0.44301 10 2.06356 2.50481 0.32961 2.62962 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 11 4.09978 0.17525 3.95748 2.07894 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.74498 4.31625 1.46634 0.26236 1.09861 0.40547 12 3.30232 0.66257 3.07026 0.91312 14 C = - < 1.38629 1.38629 1.38629 1.38629 0.01763 4.74031 4.74031 1.46634 0.26236 0.83407 0.56965 13 1.36131 1.15840 1.75912 1.35677 15 c = - < 1.38629 1.38629 1.38629 1.38629 0.04775 4.74498 3.27197 1.46634 0.26236 1.09861 0.40547 14 1.76823 3.33159 0.32229 2.67163 16 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01808 4.71530 4.71530 1.46634 0.26236 1.85039 0.17100 15 1.72410 1.00277 2.42876 1.00332 17 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02353 4.71530 4.24740 1.46634 0.26236 1.85039 0.17100 16 2.04360 2.49972 2.74971 0.32243 18 U + - _ 1.38629 1.38629 1.38629 1.38629 1.48478 4.70994 0.26861 1.46634 0.26236 1.94003 0.15513 17 1.19309 1.76078 1.57916 1.14363 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.18661 2.01435 3.30166 0.70889 0.67765 0.06055 2.83438 18 2.21437 2.76262 0.27015 2.74289 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01807 4.71552 4.71552 1.46634 0.26236 1.84652 0.17172 19 1.46848 2.75557 0.55793 2.01170 23 G + - _ 1.38629 1.38629 1.38629 1.38629 0.08417 4.71552 2.63423 1.46634 0.26236 1.52608 0.24512 20 1.61779 1.74334 2.59971 0.59342 24 U + - _ 1.38629 1.38629 1.38629 1.38629 1.34345 0.31535 4.65425 0.06898 2.70830 0.16741 1.86986 21 1.09144 2.33318 2.22878 0.77735 27 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 22 1.57350 1.91003 0.82959 1.56841 28 g = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 23 1.35457 3.23221 0.42300 3.04933 29 G = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 24 2.27993 4.08947 0.15149 3.83809 30 G = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 25 2.91436 0.63667 2.57394 1.07742 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 26 1.23548 2.95295 0.59727 2.23672 32 G + - , 1.38629 1.38629 1.38629 1.38629 0.03368 3.71202 4.74498 0.60437 0.79058 1.09861 0.40547 27 2.24727 1.05626 2.05260 0.87189 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 28 2.47834 1.49496 2.72519 0.46788 35 U = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 29 3.80453 2.72837 3.06604 0.14410 36 U = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 30 0.19244 3.98589 2.26942 2.93549 37 A = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 31 2.03502 3.13520 0.26059 2.89611 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 32 4.04673 0.09327 4.54208 2.79822 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 33 3.89885 3.52952 4.42979 0.06347 40 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 34 4.17069 5.21046 0.03065 4.67963 41 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 35 4.16573 3.91760 4.71818 0.04535 42 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 36 4.16573 3.91760 4.71818 0.04535 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 37 0.07219 4.23263 3.25781 4.09465 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 38 0.12048 3.67492 3.69411 2.76008 45 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 39 3.22366 0.35610 2.94016 1.57538 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 40 2.97509 2.54563 3.78116 0.16518 47 U = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 41 0.17890 3.79314 2.37223 3.03623 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 42 0.55179 2.90341 1.30913 2.31069 49 A = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 43 1.03000 2.34447 0.92819 1.88500 50 g = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 44 0.61646 2.49793 1.82316 1.53074 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 45 1.79793 2.41396 1.20982 0.80599 52 u + - , 1.38629 1.38629 1.38629 1.38629 1.74924 4.74498 0.20163 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 47 1.80293 1.30596 1.07732 1.49717 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 48 1.80052 1.30669 1.07821 1.49668 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 49 1.79944 1.30703 1.07862 1.49647 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 50 1.79901 1.30716 1.07878 1.49638 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 51 1.79889 1.30719 1.07882 1.49636 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 52 1.79893 1.30718 1.07881 1.49636 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 53 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.34330 0.10094 54 0.82887 1.90707 1.92702 1.31170 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11445 3.40842 2.58965 1.46634 0.26236 4.47492 0.01146 55 0.84150 1.88893 1.89818 1.31728 62 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11057 3.36556 2.65730 1.46634 0.26236 4.48926 0.01129 56 1.65074 1.81508 2.09561 0.64957 63 U + - _ 1.38629 1.38629 1.38629 1.38629 0.33358 3.32932 1.39501 1.46634 0.26236 4.50076 0.01116 57 1.73020 1.22023 1.16212 1.53820 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 58 1.73013 1.22026 1.16215 1.53817 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 59 1.73014 1.22026 1.16215 1.53818 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 60 1.73030 1.22019 1.16209 1.53823 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 61 1.73075 1.22000 1.16193 1.53836 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 62 1.73169 1.21959 1.16158 1.53863 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 63 1.73350 1.21882 1.16092 1.53917 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08609 2.49510 64 2.09674 2.39625 2.26060 0.38302 71 U + - , 1.38629 1.38629 1.38629 1.38629 1.62575 0.23059 4.69213 0.05178 2.98646 0.25390 1.49507 65 2.02247 1.37142 3.02721 0.57009 74 U + - , 1.38629 1.38629 1.38629 1.38629 0.05446 4.74498 3.11654 1.46634 0.26236 1.09861 0.40547 66 1.81828 3.42259 0.26568 3.26013 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.01820 4.70871 4.70871 1.46634 0.26236 1.88076 0.16543 67 2.05785 1.51477 2.03935 0.64952 76 U = - < 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 68 1.16601 3.16933 0.51624 3.00369 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.02832 3.96814 4.70945 0.77812 0.61483 1.94790 0.15382 69 2.76249 4.25526 0.09770 4.15066 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 70 2.86928 4.12709 0.09515 4.02333 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.70945 4.54051 1.46634 0.26236 1.94790 0.15382 71 0.33329 2.95929 2.22988 2.08717 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04547 3.34016 4.70779 0.44930 1.01632 0.32553 1.28066 72 2.12979 2.75782 2.37584 0.32190 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 73 1.57234 0.67233 2.56335 1.58533 84 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 74 1.18515 3.25085 0.51230 2.87457 85 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03058 3.84326 4.74498 0.67756 0.70898 1.09861 0.40547 75 0.22970 3.18591 2.67194 2.35633 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 76 1.32805 2.33534 0.63377 2.22896 88 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04795 3.58729 3.95590 0.91754 0.50999 1.09861 0.40547 77 2.07276 2.26431 0.47074 1.92607 91 G + - _ 1.38629 1.38629 1.38629 1.38629 0.05429 4.73447 3.12225 1.46634 0.26236 0.64633 0.74226 78 4.13768 0.10154 3.78893 2.84776 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 79 4.19632 0.10110 4.05046 2.75364 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 80 3.19242 0.58347 2.89976 1.06151 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 0.33568 1.25475 81 1.12753 2.24709 1.17033 1.34633 95 a = - > 1.38629 1.38629 1.38629 1.38629 0.03125 3.81350 4.74498 0.66029 0.72713 1.09861 0.40547 82 3.31336 0.38266 3.16006 1.43071 97 C = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 83 2.83746 0.46829 2.73085 1.38553 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 84 1.29640 1.49072 1.54008 1.24858 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 85 0.88643 2.44332 1.01767 1.96918 100 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 86 2.89451 1.28880 2.55474 0.52533 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 87 2.90414 0.44288 2.37324 1.56140 102 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 88 4.05249 2.70373 4.27874 0.10336 103 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 89 0.04673 4.64526 3.78358 4.31923 104 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03739 4.74498 3.57544 1.46634 0.26236 1.09861 0.40547 90 2.79495 3.56721 0.17771 2.61094 105 G + - : 1.38629 1.38629 1.38629 1.38629 0.00899 4.71657 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Asn.cm0000644000543100007160000017244612573631164021422 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Asn STATES 289 NODES 76 CLEN 90 W 109 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:51:00 2015 COM [1] cmbuild --hand --enone Asn_model.cm aligntRNAdb-Asn.sto COM [2] cmcalibrate --seed 208 Asn_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3323941287 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.5804 0.71876 ECMLC 0.52385 -10.40344 1.66499 1600000 668081 0.001796 ECMGC 0.33810 -46.16329 -32.03251 1600000 47527 0.008416 ECMLI 0.52378 -10.15101 1.85893 1600000 647345 0.001854 ECMGI 0.35813 -41.50546 -28.29282 1600000 45399 0.008811 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 109 147 -13.075 -14.320 -0.023 -5.989 IL 1 1 2 1 4 20 44 110 148 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 46 110 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - G - + MR 3 2 3 5 5 25 50 109 147 -13.104 -0.001 -12.919 -13.131 -14.023 -8.705 -10.476 1.998 -9.463 D 4 2 3 5 5 17 41 108 146 -7.927 -0.097 -5.554 -6.985 -4.979 IR 5 5 3 5 5 18 42 109 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 U A = = MP 6 5 3 10 6 25 50 108 146 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 7 5 3 10 6 17 41 106 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 40 106 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 37 103 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 42 107 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 42 107 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 A U = = MP 12 11 6 16 6 24 48 106 144 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.908 -12.430 -13.587 -7.889 -10.336 -9.854 -5.420 -10.524 -0.080 -7.816 -11.599 -9.720 -8.892 ML 13 11 6 16 6 17 40 104 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 40 104 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 37 101 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 41 105 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 41 105 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 G C = = MP 18 17 6 22 6 23 46 104 142 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.603 -8.650 -12.835 1.063 -13.432 -9.966 -7.931 -12.668 -9.986 3.795 -10.232 -6.496 -8.235 -10.373 -10.290 -11.570 ML 19 17 6 22 6 16 40 102 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 40 102 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 36 99 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 41 103 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 41 103 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 A U = = MP 24 23 6 28 6 21 44 102 140 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.897 -12.435 -13.590 -7.893 -10.336 -9.854 -1.730 -10.524 -0.352 -7.817 -11.599 -9.723 -8.892 ML 25 23 6 28 6 16 40 100 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 39 100 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 36 97 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 41 101 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 41 101 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 U A = = MP 30 29 6 34 6 19 42 100 138 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 0.038 -9.692 -10.530 -7.599 -10.650 -9.795 3.630 -10.943 1.361 -9.332 ML 31 29 6 34 6 16 39 98 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 39 98 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 36 95 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 40 99 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 40 99 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 U A = = MP 36 35 6 40 6 17 40 98 136 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.486 -9.692 -10.530 -7.599 -10.650 -9.794 3.760 -10.943 0.425 -1.397 ML 37 35 6 40 6 15 38 97 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 38 96 134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 36 94 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 39 97 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 39 97 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 G C = = MP 42 41 6 46 4 15 38 96 134 -13.280 -13.487 -0.033 -5.472 -11.529 -8.653 -12.648 0.568 -13.393 -10.004 -7.930 -12.511 -9.982 3.834 -10.239 -2.034 -8.221 -10.396 -10.271 -11.362 ML 43 41 6 46 4 14 37 95 133 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 37 95 133 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 35 94 131 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 38 96 134 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 37 96 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - + - ML 48 47 6 50 3 13 36 94 132 -14.158 -0.010 -7.184 1.984 -9.930 -9.333 -4.589 D 49 47 6 50 3 12 35 93 131 -10.210 -0.062 -4.601 IL 50 50 3 50 3 13 36 95 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 35 93 131 -14.834 -0.000 1.890 -9.323 -1.778 -9.080 D 52 50 3 53 2 11 34 92 130 -8.796 -0.003 IL 53 53 3 53 2 12 36 94 131 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 34 92 130 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 44 63 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 44 63 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 2 26 44 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 28 G U = = MP 58 57 1 62 6 2 4 26 44 -14.078 -14.017 -0.005 -12.794 -8.337 -13.468 -10.099 -8.759 -10.294 0.384 -12.435 -13.588 -7.893 -10.337 -9.854 1.415 -10.524 3.586 -7.817 -11.599 -9.723 -8.892 ML 59 57 1 62 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G = = MP 64 63 6 68 6 2 4 24 42 -14.074 -14.013 -0.021 -12.789 -6.126 -13.464 -11.097 -11.347 -10.422 -7.586 -8.780 -10.573 3.953 -9.691 -10.521 -7.568 -3.233 -2.054 -5.511 -10.942 -2.957 -9.325 ML 65 63 6 68 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -8.043 -6.772 -0.567 -6.750 -1.884 -4.964 -0.594 -1.626 1.333 -1.016 D 67 63 6 68 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 C G = = MP 70 69 6 74 6 2 4 22 40 -14.057 -13.997 -0.001 -12.773 -13.053 -13.448 -11.088 -11.368 -10.406 -7.605 -8.756 -10.550 3.951 -9.672 -10.509 -7.577 -10.629 -9.770 -1.008 -10.922 -6.459 -9.311 ML 71 69 6 74 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -9.603 -8.332 -0.169 -8.310 -3.444 -6.524 -2.864 -4.240 1.898 -3.601 D 73 69 6 74 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 A G = = MP 76 75 6 80 4 2 2 20 38 -13.280 -13.487 -0.013 -6.782 1.000 -11.309 3.495 -0.760 -8.792 -10.585 -0.349 -9.698 -0.847 -7.543 -10.649 -9.606 -0.839 -10.949 -2.183 -9.326 ML 77 75 6 80 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - G - + - ML 82 81 6 84 3 1 2 17 35 -14.177 -0.000 -12.831 -0.320 -8.026 1.651 -4.211 D 83 81 6 84 3 0 0 18 36 -9.002 -4.515 -0.067 IL 84 84 3 84 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - U - + - ML 85 84 3 87 3 1 1 16 34 -14.177 -0.055 -4.731 -0.704 -2.724 -1.374 1.510 D 86 84 3 87 3 0 0 17 35 -9.002 -4.515 -0.067 IL 87 87 3 87 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 15 33 -14.122 -3.007 -0.192 -2.009 -4.646 -4.936 1.879 D 89 87 3 90 3 0 0 15 33 -11.212 -6.725 -0.014 IL 90 90 3 90 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 14 32 -2.124 -0.520 -3.768 -1.168 -3.575 -1.005 1.572 D 92 90 3 93 3 0 0 12 31 -15.429 -0.002 -9.820 IL 93 93 3 93 3 1 1 14 32 -3.960 -0.111 -6.660 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - + - ML 94 93 3 96 3 1 1 12 31 -14.178 -0.000 -12.832 -0.579 -5.252 1.708 -4.726 D 95 93 3 96 3 0 0 14 33 -8.970 -4.483 -0.069 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - a - + - ML 97 96 3 99 3 1 1 11 29 -14.178 -0.076 -4.278 0.981 -1.784 -0.729 0.180 D 98 96 3 99 3 0 0 13 32 -8.970 -4.483 -0.069 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 8 13 -0.397 -2.055 -12.756 -1.952 -0.542 -7.595 1.609 D 101 99 3 102 3 0 0 4 10 -11.574 -0.024 -5.966 IL 102 102 3 102 3 1 1 7 12 -4.546 -0.064 -11.167 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.659 -2.513 -2.244 -1.136 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.027 -8.173 0.729 -1.729 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.974 -11.183 -10.350 -1.279 -4.714 -10.533 1.443 -9.632 -10.436 -7.280 -10.583 -9.426 3.542 -10.841 -0.158 -1.888 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.361 -12.055 -12.202 -11.198 -10.406 -12.081 -9.322 -11.849 -10.389 -11.190 -12.400 -11.868 3.995 -10.491 -5.271 -5.537 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.901 -8.639 -13.807 -1.399 -13.588 -9.838 -7.936 -13.429 -10.000 3.963 -10.206 -6.551 -8.286 -10.291 -10.364 -12.718 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.249 1.948 -9.650 -2.851 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 58 96 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 3 60 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 2 58 96 -14.190 -0.040 -5.195 1.176 -7.555 -0.403 -0.030 D 167 165 2 168 3 0 0 57 94 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 59 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - + - ML 169 168 3 171 2 1 1 57 95 -14.803 -0.000 -1.598 -2.662 0.067 1.301 D 170 168 3 171 2 0 0 56 94 -9.539 -0.002 IL 171 171 3 171 2 1 1 58 95 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 56 94 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -13.489 -13.170 -3.654 -0.120 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - U - + - ML 216 215 6 218 3 1 1 14 32 -10.638 -0.003 -9.292 -5.946 -5.413 -6.813 1.982 D 217 215 6 218 3 0 0 9 27 -15.483 -10.996 -0.001 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - U - + - ML 219 218 3 221 3 1 1 13 31 -10.638 -0.003 -9.292 -5.946 -5.413 -6.813 1.982 D 220 218 3 221 3 0 0 8 26 -15.483 -10.996 -0.001 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - U - + - ML 222 221 3 224 3 1 1 11 30 -10.638 -3.741 -0.113 -4.159 -0.449 -4.930 1.668 D 223 221 3 224 3 0 0 7 25 -15.483 -10.996 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 47 85 -14.190 -0.053 -4.783 IL 230 230 2 230 3 1 1 49 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - U - + - ML 231 230 2 233 3 1 2 47 85 -0.075 -4.302 -12.791 -2.056 -2.559 -2.821 1.786 D 232 230 2 233 3 0 0 45 83 -10.878 -0.039 -5.269 IL 233 233 3 233 3 1 2 46 84 -8.764 -0.004 -11.464 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - C - + - ML 234 233 3 236 5 1 2 45 83 -13.126 -0.001 -12.941 -13.153 -14.045 -0.860 1.258 -7.399 0.072 D 235 233 3 236 5 0 0 44 81 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 46 83 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 92 G C = = MP 237 236 3 241 6 2 2 44 82 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.932 -8.682 -11.483 0.574 -13.025 -10.466 -7.912 -11.469 -9.941 3.584 -10.318 1.323 -8.081 -10.660 -10.076 -10.118 ML 238 236 3 241 6 1 1 43 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 42 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 39 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 44 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 44 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 91 U A = = MP 243 242 6 247 6 2 2 42 80 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.984 -11.117 -10.368 -1.551 -8.767 -10.566 -0.185 -9.657 -10.445 -7.281 -10.598 -2.020 3.314 -10.877 0.101 1.808 ML 244 242 6 247 6 1 1 41 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 40 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 37 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 42 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 90 G C = = MP 249 248 6 253 6 2 2 40 78 -3.884 -14.017 -0.102 -12.794 -13.073 -13.468 -11.374 -8.659 -12.298 1.326 -13.305 -10.095 -7.928 -12.207 -9.973 3.747 -10.257 -4.279 -8.190 -10.451 -10.227 -10.980 ML 250 248 6 253 6 1 1 39 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 38 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 36 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 39 77 -7.028 -7.290 -0.027 -8.946 -9.722 -9.382 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 39 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 89 G C = = MP 255 254 6 259 6 2 2 38 76 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.843 -2.042 -13.578 -1.361 -13.561 -9.860 -7.936 -13.261 -9.998 3.936 -10.210 -4.199 -8.277 -10.305 -10.352 -12.434 ML 256 254 6 259 6 1 1 37 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 37 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 35 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 38 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 37 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 88 G C = = MP 261 260 6 265 4 2 2 36 74 -13.280 -13.487 -0.055 -4.742 -11.955 -8.638 -14.050 -2.253 -13.615 -9.818 -7.937 -13.601 -10.003 3.967 -2.921 -6.560 -8.294 -10.279 -10.376 -13.033 ML 262 260 6 265 4 1 1 36 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 35 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 34 72 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 37 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 36 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - A - + - ML 267 266 6 269 3 1 1 34 72 -2.991 -0.194 -12.790 1.044 -7.195 -0.637 0.366 D 268 266 6 269 3 0 0 33 71 -10.911 -0.038 -5.302 IL 269 269 3 269 3 1 1 34 72 -5.904 -0.028 -8.604 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 33 71 -14.190 -0.000 -12.844 -0.925 -4.728 -4.069 1.755 D 271 269 3 272 3 0 0 31 69 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 34 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - a - + - ML 273 272 3 275 3 1 1 32 70 -14.190 -0.000 -12.844 0.740 -1.416 -0.657 0.401 D 274 272 3 275 3 0 0 30 68 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 33 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - G - + - ML 276 275 3 278 3 1 1 31 69 -5.326 -0.037 -12.844 0.559 -4.391 1.238 -3.049 D 277 275 3 278 3 0 0 29 67 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 31 69 -3.855 -0.120 -6.555 0.000 0.000 0.000 0.000 [ MATL 72 ] 82 - A - + - ML 279 278 3 281 3 1 1 30 68 -14.190 -0.000 -12.844 1.722 -7.440 -1.989 -1.173 D 280 278 3 281 3 0 0 28 65 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 31 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 83 - a - + - ML 282 281 3 284 3 1 1 29 67 -4.493 -0.305 -2.776 0.768 -4.406 0.562 -0.371 D 283 281 3 284 3 0 0 26 63 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 35 72 -0.704 -1.383 -8.574 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.618 -2.505 0.550 0.772 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Asn LENG 90 MAXL 177 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:51:00 2015 COM [1] cmbuild --hand --enone Asn_model.cm aligntRNAdb-Asn.sto NSEQ 282 EFFN 3.567169 CKSUM 3323941287 STATS LOCAL MSV -9.5299 0.71876 STATS LOCAL VITERBI -9.7987 0.71876 STATS LOCAL FORWARD -3.5132 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35485 1.59254 1.35389 1.27164 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 0.00000 * 1 3.57956 2.39361 3.40426 0.16537 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 2 0.26017 3.46549 1.84057 3.24168 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 3 2.00800 3.22058 0.24777 3.09507 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 4 0.28265 3.40227 1.76405 3.18037 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 5 2.78852 1.50565 2.57299 0.44581 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 6 2.61923 1.61180 2.39338 0.45210 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 7 2.13859 3.27322 0.22183 3.14093 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04653 4.17947 3.50121 1.46634 0.26236 1.09861 0.40547 8 0.11532 3.51520 3.26907 3.19085 8 A + - , 1.38629 1.38629 1.38629 1.38629 0.03619 4.16450 3.91193 1.46634 0.26236 0.70062 0.68573 9 0.22222 3.10942 2.34286 2.83736 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03123 4.17506 4.17506 1.46634 0.26236 0.93750 0.49693 10 1.76742 3.20442 0.30302 2.99452 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03318 4.17947 4.05517 1.46634 0.26236 1.09861 0.40547 11 3.43432 0.16686 3.09622 2.57417 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.04117 4.17744 3.68921 1.46634 0.26236 1.01748 0.44864 12 3.46542 0.20687 3.27585 2.13853 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.03140 4.16979 4.16979 1.46634 0.26236 0.80084 0.59593 13 1.08239 1.56756 1.61290 1.37298 13 a = - < 1.38629 1.38629 1.38629 1.38629 0.03718 4.17947 3.85413 1.46634 0.26236 1.09861 0.40547 14 1.53603 2.88351 0.44254 2.44846 14 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17356 4.17356 1.46634 0.26236 1.21921 0.35022 15 1.55531 2.02131 2.03480 0.64305 15 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05739 4.17356 3.20956 1.46634 0.26236 1.21921 0.35022 16 2.10637 2.34005 2.76169 0.33015 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.93350 4.14827 0.52588 1.46634 0.26236 1.61077 0.22281 17 1.32407 1.71217 1.68460 0.99979 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.14202 2.50973 2.97383 0.75118 0.63830 0.04947 3.03094 18 1.64100 2.89418 0.40070 2.51305 19 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03127 4.17372 4.17372 1.46634 0.26236 1.21629 0.35144 19 0.95368 1.90183 1.74553 1.23502 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06723 4.17372 3.00320 1.46634 0.26236 1.21629 0.35144 20 1.90734 1.68522 2.58518 0.52638 21 U + - _ 1.38629 1.38629 1.38629 1.38629 0.75132 0.66881 4.13888 0.09911 2.36063 0.44200 1.02932 21 0.52951 2.17655 2.15145 1.70728 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 22 1.46087 1.80774 0.95335 1.52100 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 23 2.37121 3.41545 0.18269 3.20047 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 24 2.81506 3.35517 0.14886 3.13487 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 25 3.17922 1.38099 2.98323 0.42095 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 26 0.87877 2.36089 1.13834 1.77183 29 a + - , 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 27 2.21914 1.27173 2.06427 0.72559 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 28 3.64669 2.35564 3.45224 0.16556 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 29 3.61052 2.39677 3.42052 0.16340 32 U = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 30 0.18350 3.42967 2.30789 3.33030 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 31 2.67836 3.64058 0.13187 3.55325 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 32 3.13052 0.17274 3.70897 2.40298 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 33 3.09926 2.98291 3.63205 0.13032 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 34 3.20561 4.14300 0.08438 3.70877 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 35 3.09926 2.98291 3.63205 0.13032 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 36 3.09926 2.98291 3.63205 0.13032 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 37 0.08989 3.75016 3.42770 3.50667 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 38 0.08989 3.75016 3.42770 3.50667 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 39 3.73938 0.15660 3.48050 2.40362 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 40 3.54993 2.66112 3.23616 0.14840 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 41 0.18556 3.61456 2.23226 3.34833 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 42 0.19212 3.62680 2.16691 3.39150 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 43 0.87736 2.23813 1.08530 1.96851 46 a = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 44 0.84663 2.15561 1.64845 1.33575 47 a + - , 1.38629 1.38629 1.38629 1.38629 0.04998 4.17947 3.39791 1.46634 0.26236 1.09861 0.40547 45 1.60500 1.99563 1.58262 0.78144 48 u + - , 1.38629 1.38629 1.38629 1.38629 1.16543 4.16116 0.39657 1.46634 0.26236 1.43147 0.27306 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 47 1.80328 1.30585 1.07719 1.49724 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 48 1.80108 1.30652 1.07801 1.49680 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 49 1.80013 1.30681 1.07836 1.49660 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 50 1.79979 1.30692 1.07849 1.49654 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 51 1.79974 1.30693 1.07851 1.49653 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 52 1.79983 1.30691 1.07847 1.49655 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.34710 0.10053 53 1.47179 1.70722 1.89678 0.82310 56 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08191 3.23598 3.23598 1.46634 0.26236 3.75886 0.02359 54 1.47179 1.70722 1.89678 0.82310 57 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08191 3.23598 3.23598 1.46634 0.26236 3.75886 0.02359 55 1.43957 1.52750 1.90102 0.92514 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.24025 3.23598 1.74727 1.46634 0.26236 3.75886 0.02359 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 57 1.73105 1.21987 1.16182 1.53845 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 58 1.73091 1.21993 1.16186 1.53841 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 59 1.73085 1.21995 1.16189 1.53839 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 60 1.73092 1.21992 1.16186 1.53841 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 61 1.73123 1.21979 1.16175 1.53850 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 62 1.73198 1.21947 1.16147 1.53872 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08039 2.56076 64 1.98527 2.13085 2.48972 0.41402 67 U + - , 1.38629 1.38629 1.38629 1.38629 1.07069 0.44388 4.15500 0.04820 3.05635 0.57410 0.82830 65 1.62799 0.85971 2.49133 1.21204 69 c + - , 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 66 1.92111 2.94076 0.30190 2.79161 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 67 1.97826 1.44790 1.80792 0.77082 71 u = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 68 1.89586 3.14460 0.27767 3.01232 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.07977 2.79091 4.17947 0.44094 1.03124 1.09861 0.40547 69 2.45435 3.43964 0.16754 3.31688 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 70 2.62720 3.43627 0.15072 3.33960 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.05696 4.17947 3.21744 1.46634 0.26236 1.09861 0.40547 71 0.92134 2.10315 1.71456 1.20430 76 a + - _ 1.38629 1.38629 1.38629 1.38629 0.12134 2.31696 4.15440 0.29275 1.37124 0.56772 0.83660 72 1.79763 2.25727 2.56345 0.42674 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 73 1.05213 1.83471 1.72908 1.15933 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 74 1.08713 2.46172 0.81099 2.01659 80 g + - _ 1.38629 1.38629 1.38629 1.38629 0.04838 3.44451 4.17947 0.78238 0.61123 1.09861 0.40547 75 0.44397 2.46615 2.16316 1.84110 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 76 1.02224 2.14875 1.26591 1.42047 83 a + - _ 1.38629 1.38629 1.38629 1.38629 0.17149 3.10308 2.18320 1.12019 0.39485 1.09861 0.40547 77 1.39667 1.95087 1.33937 1.05435 87 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07702 4.07702 1.46634 0.26236 0.24034 1.54346 78 3.53797 0.18102 3.19912 2.34640 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 79 3.51553 0.19183 3.26835 2.23721 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 80 3.23162 0.32065 2.96051 1.69807 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 81 1.06703 2.00094 1.22405 1.48401 91 a = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 82 3.01470 0.43577 2.74531 1.42734 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 83 3.35652 0.26427 3.09568 1.88299 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 84 0.58150 2.56324 1.33299 2.30064 94 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 85 0.64889 2.73943 1.09280 2.55758 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 86 3.38336 2.22180 3.19575 0.20246 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 87 3.32091 0.28457 3.04551 1.80809 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 88 3.45373 2.38178 3.26493 0.17699 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 89 0.18531 3.61702 2.23268 3.35097 99 A = - ) 1.38629 1.38629 1.38629 1.38629 0.04160 4.17947 3.67136 1.46634 0.26236 1.09861 0.40547 90 3.18701 4.12252 0.08610 3.68907 100 G + - : 1.38629 1.38629 1.38629 1.38629 0.01583 4.15370 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal.i1i0000644000543100007160000000151013054731276020745 0ustar pchanlowelabɳ$!NrHTRNAinf-mito-mammalAlaArgAsnXAsp CysGln\GluGlyHis` Ile $LeuTAA(LeuTAGdFLysdMethPhe hlPro pSerGCT tSerTGA Q:Thr XTrp \Tyr U`ValdtRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-SerGCT.cm0000644000543100007160000014713612573631650021502 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Ser-GCT-2nd-align STATES 242 NODES 62 CLEN 76 W 223 ALPH RNA RF yes CONS yes MAP yes DATE Sat Jun 27 19:34:18 2015 COM [1] cmbuild --hand --enone Ser-GCT-final-vert.cm Ser-GCT-2nd-align.sto COM [2] cmcalibrate --seed 208 Ser-GCT-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 434431968 NULL 0.000 0.000 0.000 0.000 EFP7GF -18.2269 0.71821 ECMLC 0.70191 -6.13473 2.31724 1600000 452514 0.002652 ECMGC 0.32242 -26.18255 -11.97919 1600000 38987 0.010260 ECMLI 0.66384 -5.55705 3.17579 1600000 395255 0.003036 ECMGI 0.33436 -22.83640 -9.18095 1600000 38457 0.010401 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 223 412 -15.013 -16.259 -9.326 -0.002 IL 1 1 2 1 4 13 38 225 413 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 38 225 413 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 129 - a - + MR 3 2 3 5 3 13 38 224 412 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 4 2 3 5 3 10 36 221 409 -17.514 -12.691 -0.000 IR 5 5 3 5 3 13 38 224 412 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 128 - a - + MR 6 5 3 8 3 12 37 223 411 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 7 5 3 8 3 10 36 221 409 -17.514 -12.691 -0.000 IR 8 8 3 8 3 12 37 223 412 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 127 - a - + MR 9 8 3 11 3 11 36 222 410 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 10 8 3 11 3 10 36 221 409 -17.514 -0.014 -6.733 IR 11 11 3 11 3 10 33 222 411 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 126 - a - + MR 12 11 3 14 5 13 38 221 409 -15.049 -0.000 -14.864 -15.076 -15.968 0.898 -2.484 0.865 -2.864 D 13 11 3 14 5 6 26 219 407 -8.984 -2.779 -6.610 -0.274 -6.035 IR 14 14 3 14 5 7 27 221 409 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 125 G C = = MP 15 14 3 19 6 14 37 220 408 -15.984 -15.923 -0.000 -14.700 -14.980 -15.375 -10.219 -2.458 -10.057 1.680 -11.205 -10.637 -1.979 -10.722 -10.423 3.445 -10.686 0.306 -2.155 -9.916 -8.280 -9.010 ML 16 14 3 19 6 6 25 217 406 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 8 28 219 407 -10.584 -9.313 -0.083 -9.291 -4.425 -7.505 -2.931 -1.318 -3.676 1.761 D 18 14 3 19 6 4 22 210 399 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 7 26 219 407 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 7 26 219 407 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 124 A U = = MP 21 20 6 25 6 13 35 218 406 -15.996 -6.790 -0.013 -14.712 -14.991 -15.387 -12.038 -3.069 -12.233 3.865 -14.374 -15.529 -9.832 -12.276 -11.793 -0.343 -12.463 -2.926 -1.387 -13.539 -11.663 -10.832 ML 22 20 6 25 6 6 25 216 404 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 6 25 214 403 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 4 22 208 396 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 6 26 217 405 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 8 29 217 405 -5.289 -0.058 -8.800 -6.968 -8.074 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 122 G C = = MP 27 26 6 31 6 13 33 216 404 -15.996 -4.355 -0.072 -14.712 -14.991 -15.387 -4.679 -8.603 -9.783 1.529 -10.914 -4.596 -2.136 -5.682 -10.222 3.610 -5.443 -1.471 -3.961 -3.091 -7.988 -8.749 ML 28 26 6 31 6 6 25 214 403 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 6 24 212 400 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 4 22 206 394 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 6 26 215 403 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 9 30 215 403 -7.557 -0.306 -2.446 -9.236 -10.342 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 120 a u = = MP 33 32 6 37 6 12 31 214 402 -6.657 -15.922 -0.015 -14.698 -14.978 -15.373 2.155 0.213 -2.670 2.226 -1.983 -5.969 -1.259 -9.381 -1.560 1.609 -6.266 -0.149 -1.084 -5.463 -4.021 -8.020 ML 34 32 6 37 6 7 27 214 402 -10.204 -0.095 -5.264 -4.959 -10.400 -7.929 -4.285 -5.824 1.964 -5.018 MR 35 32 6 37 6 6 24 210 398 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 4 21 203 391 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 8 29 213 401 -6.211 -6.474 -0.048 -8.129 -8.905 -8.566 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 8 28 213 401 -5.314 -0.057 -8.825 -6.993 -8.099 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 118 G C = = MP 39 38 6 43 6 11 29 212 400 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -3.158 -1.832 -9.783 2.353 -5.613 -6.015 -1.575 -3.071 -10.221 3.182 -10.467 -1.753 -1.677 -5.461 -2.213 -3.599 ML 40 38 6 43 6 6 24 208 396 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 6 24 207 395 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 3 21 200 388 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 6 25 210 399 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 6 25 210 399 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 117 A U = = MP 45 44 6 49 6 9 27 210 398 -3.854 -15.935 -0.104 -14.712 -14.991 -15.387 -9.965 -4.159 -9.783 3.431 -10.914 -3.405 -4.046 -4.671 -10.222 1.723 -10.468 -2.371 -0.791 -2.432 -4.810 -0.587 ML 46 44 6 49 6 5 23 204 392 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 5 23 203 391 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 3 21 197 385 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 8 26 209 397 -8.927 -2.215 -0.356 -10.845 -11.621 -11.281 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 7 26 209 397 -5.939 -0.037 -9.450 -7.618 -8.724 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 115 G C = = MP 51 50 6 55 3 7 25 208 396 -0.001 -24.440 -11.135 -4.864 -3.190 -2.682 0.569 -10.914 -2.235 -2.781 -10.473 -3.522 3.653 -2.992 -1.892 -1.758 -1.196 -4.086 -8.748 ML 52 50 6 55 3 4 22 196 384 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 3 4 22 196 384 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 54 50 6 55 3 3 21 195 383 -1.585 -1.585 -1.585 IL 55 55 5 55 3 5 23 206 394 -0.141 -7.219 -3.532 0.000 0.000 0.000 0.000 IR 56 56 6 56 2 4 21 74 109 -8.224 -0.005 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 57 56 6 121 58 3 20 73 108 [ BEGR 45 ] - - - - - - S 58 57 1 59 3 0 4 43 75 -16.128 -0.197 -2.967 IL 59 59 2 59 3 1 5 45 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 78 - a - + - ML 60 59 2 62 3 1 4 43 75 -15.931 -1.085 -0.919 0.518 0.491 -1.090 -0.530 D 61 59 2 62 3 0 2 42 74 -14.584 -10.097 -0.001 IL 62 62 3 62 3 1 5 45 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 79 - C - + - ML 63 62 3 65 3 1 4 43 75 -4.814 -0.052 -13.500 0.047 1.045 -8.047 -0.152 D 64 62 3 65 3 0 2 42 74 -16.784 -0.001 -11.176 IL 65 65 3 65 3 1 3 43 75 -4.864 -0.058 -7.565 0.000 0.000 0.000 0.000 [ MATL 48 ] 81 - C - + - ML 66 65 3 68 5 1 5 42 74 -15.062 -0.000 -14.877 -15.089 -15.981 -2.003 1.640 -9.668 -0.659 D 67 65 3 68 5 0 0 40 72 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 42 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 82 113 C G = = MP 69 68 3 73 6 2 5 41 73 -15.996 -1.007 -0.994 -14.712 -14.991 -15.387 -13.048 -13.330 -12.365 -9.567 -10.716 -12.510 3.880 -11.631 -12.469 -9.538 -12.589 -11.734 0.226 -12.882 -3.339 -11.271 ML 70 68 3 73 6 1 1 38 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 39 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 36 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 39 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 39 71 -10.869 -0.001 -14.380 -12.548 -13.653 0.000 0.000 0.000 0.000 [ MATP 50 ] 83 111 c g = = MP 75 74 6 79 6 2 5 38 70 -4.670 -7.332 -0.067 -14.712 -14.991 -15.387 -9.291 -1.547 -9.400 1.541 -1.914 -4.356 2.341 -5.801 -9.366 1.408 -5.786 -5.557 2.001 -9.560 -0.932 -3.039 ML 76 74 6 79 6 1 1 36 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 37 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 34 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 40 72 -1.062 -0.962 -7.240 -10.978 -11.754 -11.414 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 2 36 68 -7.456 -0.013 -10.968 -9.135 -10.241 0.000 0.000 0.000 0.000 [ MATP 51 ] 87 109 u a = = MP 81 80 6 85 6 2 4 35 67 -4.024 -9.426 -0.095 -14.712 -10.521 -15.387 -10.143 -6.948 -10.156 1.952 -6.019 -10.990 1.584 -6.283 -10.051 1.907 -10.562 -3.092 2.186 -5.806 -1.596 -1.613 ML 82 80 6 85 6 1 1 33 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 37 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 33 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 2 35 67 -8.758 -0.187 -3.087 -10.676 -11.452 -11.113 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 2 34 66 -7.750 -0.049 -11.261 -5.180 -10.535 0.000 0.000 0.000 0.000 [ MATP 52 ] 89 107 G C = = MP 87 86 6 91 6 2 3 33 65 -15.993 -15.932 -0.087 -5.815 -4.644 -10.517 -3.576 -0.582 -5.802 1.682 -5.932 -10.376 -1.114 -5.871 -10.218 3.266 -10.464 -3.398 0.772 -9.635 -3.611 -5.686 ML 88 86 6 91 6 1 1 31 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 37 69 -8.967 -7.696 -1.701 -7.675 -0.591 -5.888 1.117 -1.557 -0.010 -1.004 D 90 86 6 91 6 0 0 32 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 33 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 33 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 90 106 G C = = MP 93 92 6 97 4 2 3 24 56 -6.253 -15.337 -0.019 -13.751 -2.781 -1.843 -6.028 0.165 -2.883 -10.291 -0.894 -5.726 -3.839 3.759 -10.380 -5.010 -3.360 -9.550 -7.900 -8.661 ML 94 92 6 97 4 1 1 27 59 -8.202 -8.384 -0.115 -3.837 -5.784 1.976 -6.245 -4.892 MR 95 92 6 97 4 1 1 37 69 -10.859 -0.332 -2.495 -5.177 1.921 -2.526 -5.803 -5.519 D 96 92 6 97 4 0 0 29 62 -5.728 -5.409 -0.632 -1.679 IL 97 97 5 97 4 1 1 29 61 -5.825 -6.509 -0.045 -8.994 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 36 68 -0.828 -1.200 -9.858 0.000 0.000 0.000 0.000 [ MATL 54 ] 92 - U - + - ML 99 98 6 101 3 1 1 17 33 -2.351 -0.315 -14.780 -1.894 -0.971 -6.305 1.682 D 100 98 6 101 3 0 0 16 34 -8.808 -0.170 -3.200 IL 101 101 3 101 3 1 1 16 32 -8.478 -0.005 -11.178 0.000 0.000 0.000 0.000 [ MATL 55 ] 94 - U - + - ML 102 101 3 104 3 1 1 15 31 -16.128 -0.001 -10.500 -4.725 -4.390 -5.964 1.963 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 95 - A - + - ML 105 104 3 107 3 1 1 14 30 -16.127 -0.000 -14.782 1.135 -0.899 -0.459 -0.891 D 106 104 3 107 3 0 0 16 34 -7.627 -0.419 -2.019 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 96 - A - + - ML 108 107 3 110 3 1 1 13 28 -5.960 -0.033 -7.269 1.660 -10.368 -0.559 -2.641 D 109 107 3 110 3 0 0 12 30 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 13 28 -4.989 -0.053 -7.689 0.000 0.000 0.000 0.000 [ MATL 58 ] 98 - A - + - ML 111 110 3 113 3 1 1 12 27 -16.119 -0.021 -6.101 1.816 -1.377 -5.331 -3.880 D 112 110 3 113 3 0 0 12 30 -10.352 -0.056 -4.744 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 99 - a - + - ML 114 113 3 116 3 1 1 11 23 -4.156 -0.107 -6.017 0.813 0.605 -2.583 -0.850 D 115 113 3 116 3 0 0 7 19 -11.470 -4.407 -0.070 IL 116 116 3 116 3 1 1 12 24 -2.224 -0.350 -9.716 0.000 0.000 0.000 0.000 [ MATL 60 ] 102 - U - + - ML 117 116 3 119 2 1 1 1 1 * 0.000 -1.173 -0.024 -3.096 1.297 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 13 ] - - - - - - S 121 57 1 122 1 0 2 51 86 0.000 [ BIF 14 ] - - - - - - B 122 121 1 123 176 0 2 51 86 [ BEGL 15 ] - - - - - - S 123 122 1 124 4 0 0 43 78 -0.005 -8.930 -9.381 -14.171 [ MATP 16 ] 29 56 A U = = MP 124 123 1 128 6 2 2 43 78 -15.991 -6.049 -0.022 -14.707 -14.987 -15.382 -0.771 -0.623 -2.383 3.244 -8.234 -4.370 -0.811 -2.971 -4.653 1.358 -8.759 -0.716 -0.089 -5.349 -4.448 -3.024 ML 125 123 1 128 6 1 1 42 76 -8.298 -8.644 -0.225 -3.053 -8.494 -6.023 1.756 -2.556 -2.169 -2.117 MR 126 123 1 128 6 1 1 41 76 -8.540 -7.269 -0.378 -7.247 -2.381 -5.461 1.643 -2.063 -1.726 -1.576 D 127 123 1 128 6 0 0 38 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 42 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 42 77 -5.946 -0.037 -9.457 -7.625 -8.730 0.000 0.000 0.000 0.000 [ MATP 17 ] 30 54 A U = = MP 130 129 6 134 6 2 2 41 76 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 1.069 0.646 -4.152 3.017 -10.377 -5.196 -1.333 -3.453 -4.909 0.736 -10.218 0.330 -1.222 -3.897 -7.757 -2.242 ML 131 129 6 134 6 1 1 39 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 39 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 36 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 40 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 40 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 31 53 G C = = MP 136 135 6 140 6 2 2 39 74 -15.996 -4.730 -0.057 -10.020 -14.991 -15.387 -2.398 -0.580 -9.783 1.726 -10.914 -4.240 -5.980 -10.473 -6.602 3.455 -10.468 -2.393 -1.926 -3.296 -3.047 -3.246 ML 137 135 6 140 6 1 1 38 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 37 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 34 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 38 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 38 73 -7.194 -0.015 -10.705 -8.873 -9.979 0.000 0.000 0.000 0.000 [ MATP 19 ] 32 51 A U = = MP 142 141 6 146 6 2 2 37 72 -4.865 -6.235 -0.070 -14.710 -14.990 -15.385 -3.696 -1.018 -9.782 3.204 -5.038 -2.667 -4.136 -3.182 -10.220 1.728 -10.466 -0.004 -0.683 -0.242 -7.986 -3.721 ML 143 141 6 146 6 1 1 37 72 -7.547 -0.743 -2.608 -2.302 -7.743 -5.273 -0.744 -1.810 1.423 -1.197 MR 144 141 6 146 6 1 1 35 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 6 146 6 0 0 32 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 38 73 -7.932 -0.031 -6.113 -9.850 -10.626 -10.286 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 37 72 -1.280 -0.770 -11.814 -9.982 -11.088 0.000 0.000 0.000 0.000 [ MATP 20 ] 34 48 A U = = MP 148 147 6 152 4 2 2 34 69 -15.219 -6.400 -0.017 -13.840 -6.323 1.383 -5.149 3.343 -3.116 -1.021 -2.965 -4.082 -10.222 0.710 -10.468 -1.178 -3.076 -3.193 -7.988 -3.388 ML 149 147 6 152 4 1 1 33 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 4 1 1 33 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 151 147 6 152 4 0 0 31 66 -4.568 -4.250 -2.265 -0.520 IL 152 152 5 152 4 1 1 34 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 153 153 6 153 3 1 1 33 68 -4.590 -0.071 -7.290 0.000 0.000 0.000 0.000 [ MATL 21 ] 35 - C - + - ML 154 153 6 156 3 1 1 32 67 -5.080 -0.043 -14.782 -6.492 1.836 -4.905 -1.371 D 155 153 6 156 3 0 0 30 65 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 34 69 -1.167 -0.855 -9.337 0.000 0.000 0.000 0.000 [ MATL 22 ] 38 - U - + - ML 157 156 3 159 3 1 1 31 66 -16.128 -0.000 -14.782 -12.377 -3.428 -13.426 1.966 D 158 156 3 159 3 0 0 29 64 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 32 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 39 - G - * - ML 160 159 3 162 3 1 1 30 65 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 161 159 3 162 3 0 0 28 63 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 31 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 40 - C - * - ML 163 162 3 165 3 1 1 29 64 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 164 162 3 165 3 0 0 27 62 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 30 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 41 - U - * - ML 166 165 3 168 3 1 1 28 63 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 167 165 3 168 3 0 0 26 61 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 29 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 42 - A - + - ML 169 168 3 171 3 1 1 27 62 -4.497 -0.065 -14.782 2.000 -12.067 -11.313 -11.400 D 170 168 3 171 3 0 0 24 59 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 32 67 -0.761 -1.290 -10.341 0.000 0.000 0.000 0.000 [ MATL 27 ] 46 - A - + - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.846 -2.635 -2.898 -3.182 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 176 122 1 177 3 0 0 27 46 -16.128 -0.000 -14.782 IL 177 177 2 177 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 57 - g - + - ML 178 177 2 180 3 1 1 27 46 -16.128 -0.000 -14.782 0.407 -0.599 0.523 -0.794 D 179 177 2 180 3 0 0 29 48 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 58 - c - + - ML 181 180 3 183 5 1 1 26 45 -15.062 -8.886 -14.877 -5.084 -0.046 0.085 0.900 -2.060 -0.263 D 182 180 3 183 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 59 77 g c = = MP 184 183 3 188 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 185 183 3 188 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 29 47 -12.350 -11.079 -0.024 -11.057 -6.191 -9.271 -6.512 1.986 -6.963 -5.601 D 187 183 3 188 6 0 0 19 38 -19.967 -18.665 -14.462 -15.144 -15.162 -0.000 IL 188 188 5 188 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 60 76 G C = = MP 190 189 6 194 6 2 2 28 46 -11.200 -11.140 -2.458 -9.916 -10.196 -0.295 -9.055 -5.769 -11.024 -3.211 -10.650 -6.956 -5.034 -10.608 -7.131 3.973 -7.333 -3.686 -5.400 -7.413 -7.456 -9.971 ML 191 189 6 194 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 18 37 -19.967 -18.665 -14.462 -15.144 -15.162 -0.000 IL 194 194 5 194 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 61 75 g c = = MP 196 195 6 200 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 197 195 6 200 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 16 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 200 200 5 200 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 62 74 g c = = MP 202 201 6 206 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 203 201 6 206 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 14 33 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 206 206 5 206 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 63 73 g c = = MP 208 207 6 212 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 209 207 6 212 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 211 207 6 212 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 212 212 5 212 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 64 72 g c = = MP 214 213 6 218 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 215 213 6 218 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 216 213 6 218 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 217 213 6 218 6 0 0 12 30 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 218 218 5 218 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 219 219 6 219 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 65 71 g c = = MP 220 219 6 224 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 221 219 6 224 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 222 219 6 224 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 223 219 6 224 4 0 0 12 30 -15.432 -15.113 -4.353 -0.072 IL 224 224 5 224 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 225 225 6 225 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 66 - G - + - ML 226 225 6 228 3 1 1 14 33 -11.820 -0.091 -4.040 -0.882 -4.492 1.330 -0.154 D 227 225 6 228 3 0 0 8 27 -17.473 -9.898 -0.002 IL 228 228 3 228 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 67 - C - + - ML 229 228 3 231 3 1 1 13 32 -11.757 -0.028 -5.725 -3.875 1.084 -0.964 0.378 D 230 228 3 231 3 0 0 7 26 -17.476 -12.989 -0.000 IL 231 231 3 231 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 68 - A - + - ML 232 231 3 234 3 1 1 12 31 -11.731 -4.834 -0.052 1.674 -1.467 -4.902 -1.273 D 233 231 3 234 3 0 0 7 25 -17.478 -12.991 -0.000 IL 234 234 3 234 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 69 - a - + - ML 235 234 3 237 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 236 234 3 237 3 0 0 5 24 -17.545 -2.502 -0.280 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 70 - c - + - ML 238 237 3 240 2 1 1 1 1 * 0.000 -0.179 0.876 -1.010 -0.351 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ser-GCT-2nd-align LENG 76 MAXL 222 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sat Jun 27 19:34:18 2015 COM [1] cmbuild --hand --enone Ser-GCT-final-vert.cm Ser-GCT-2nd-align.sto NSEQ 1086 EFFN 645.736328 CKSUM 434431968 STATS LOCAL MSV -8.7656 0.71821 STATS LOCAL VITERBI -8.9694 0.71821 STATS LOCAL FORWARD -3.5581 0.71821 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29727 1.35073 1.53110 1.38081 1.38629 1.38629 1.38629 1.38629 0.00877 8.06928 4.77733 1.46634 0.26236 0.00000 * 1 1.55208 4.09867 0.27919 4.18643 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06115 8.06115 1.46634 0.26236 0.07173 2.67053 2 0.08578 8.60624 2.84819 3.72667 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 3 1.69678 3.97831 0.24154 4.37488 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 4 0.44105 3.12690 1.28589 3.31371 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01048 4.59415 8.06928 0.06081 2.83033 1.09861 0.40547 5 1.07032 3.46451 0.53532 3.21065 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 6 0.39425 4.34947 1.50937 2.38757 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.07232 2.66704 8.06928 0.00899 4.71629 1.09861 0.40547 7 2.18712 3.76756 0.20522 2.99206 9 G = - ( 1.38629 1.38629 1.38629 1.38629 5.07355 0.00659 8.06928 2.37330 0.09780 1.09861 0.40547 8 0.39039 3.02430 1.60105 2.61829 29 A = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 9 0.30915 3.40546 1.67583 3.08823 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 10 1.34638 5.26719 0.36095 3.27952 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 11 0.49739 3.77760 1.30198 2.33287 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03551 3.36458 8.06928 0.01801 4.02594 1.09861 0.40547 12 0.22895 2.99255 2.01628 3.84801 34 A = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 13 5.81278 0.11414 4.77383 2.33898 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03048 3.51652 8.06928 0.60228 0.79311 1.09861 0.40547 14 9.19498 3.75961 9.85889 0.02373 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 15 8.25252 9.47462 0.00049 8.77371 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 16 9.56558 0.00031 10.10849 8.52445 40 C * - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 17 10.14386 9.19922 11.21987 0.00015 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 18 0.00041 9.24161 8.71528 8.78029 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04568 3.11583 8.06928 0.90305 0.51975 1.09861 0.40547 19 0.10758 3.20748 3.39019 3.58163 46 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01245 4.41752 8.06928 0.05111 2.99929 1.09861 0.40547 20 4.12587 1.18980 4.50956 0.40262 48 U = - > 1.38629 1.38629 1.38629 1.38629 0.05030 3.02117 8.06928 0.53181 0.88562 1.09861 0.40547 21 3.07545 1.19699 5.31875 0.43567 51 U = - > 1.38629 1.38629 1.38629 1.38629 0.03905 3.27069 8.06928 0.01640 4.11855 1.09861 0.40547 22 3.52178 0.30772 4.64518 1.48844 53 C = - > 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 23 1.83313 1.56295 3.50974 0.50972 54 U = - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.17702 6.07360 0.04031 3.23123 1.09861 0.40547 24 2.30105 1.58119 2.93920 0.44440 56 U = - > 1.38629 1.38629 1.38629 1.38629 0.00063 8.06729 8.06729 1.46634 0.26236 0.24047 1.54300 25 1.10486 1.80095 1.02585 1.93027 57 g + - , 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 26 1.32722 0.76463 2.80670 1.56602 58 c + - , 1.38629 1.38629 1.38629 1.38629 5.07355 8.06928 0.00659 1.46634 0.26236 1.09861 0.40547 27 1.80314 1.30589 1.07724 1.49721 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51281 0.03027 28 4.31033 5.39853 0.02271 5.40377 60 G = - < 1.38629 1.38629 1.38629 1.38629 1.75510 4.75083 0.20032 1.46634 0.26236 8.03338 0.00032 29 1.80231 1.30614 1.07755 1.49704 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 30 1.80052 1.30669 1.07821 1.49668 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 31 1.79992 1.30688 1.07844 1.49656 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 32 1.79980 1.30692 1.07849 1.49654 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 33 1.79984 1.30690 1.07847 1.49655 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.01364 0.05036 34 1.96083 3.98326 0.47547 1.51851 66 G + - _ 1.38629 1.38629 1.38629 1.38629 0.06802 5.17600 2.81167 1.46634 0.26236 6.68055 0.00126 35 3.52919 0.65208 2.07587 1.12621 67 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02857 5.13655 3.80381 1.46634 0.26236 8.01556 0.00033 36 0.23754 2.38616 4.26523 2.24997 68 A + - _ 1.38629 1.38629 1.38629 1.38629 2.12427 5.12000 0.13410 1.46634 0.26236 8.01648 0.00033 37 1.13112 1.65303 1.51838 1.32128 69 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 1.73366 0.19436 38 1.50332 0.79186 2.07747 1.61264 70 c + - _ 1.38629 1.38629 1.38629 1.38629 3.37068 6.36641 0.03675 1.46634 0.26236 7.86934 0.00038 39 1.72883 1.22082 1.16263 1.53779 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 40 1.72683 1.22168 1.16336 1.53720 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 41 1.72331 1.22320 1.16465 1.53616 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 42 1.71707 1.22590 1.16696 1.53430 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 43 1.70605 1.23075 1.17109 1.53100 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51281 0.03027 44 4.57929 0.04340 4.72314 3.75849 76 C = - > 1.38629 1.38629 1.38629 1.38629 0.01744 4.75083 4.75083 1.46634 0.26236 8.03338 0.00032 45 3.76071 0.09664 3.27790 3.46907 77 C = - > 1.38629 1.38629 1.38629 1.38629 1.75510 4.75083 0.20032 1.46634 0.26236 0.10769 2.28182 46 1.02843 1.04843 2.13822 1.74824 78 a + - , 1.38629 1.38629 1.38629 1.38629 0.74713 7.93324 0.64261 1.46634 0.26236 6.01460 0.00245 47 1.35739 0.66292 6.42295 1.48854 79 C + - , 1.38629 1.38629 1.38629 1.38629 0.03727 3.32914 7.18763 0.04168 3.19854 0.00107 6.84314 48 2.77144 0.25061 7.53797 1.84154 81 C + - , 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 49 8.46262 0.08344 8.38565 2.53057 82 C = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 50 1.59271 1.08742 1.77938 1.23513 83 c = - < 1.38629 1.38629 1.38629 1.38629 0.04071 3.22941 8.06928 0.66481 0.72231 1.09861 0.40547 51 1.41911 1.66037 1.42080 1.11938 87 u = - < 1.38629 1.38629 1.38629 1.38629 0.06315 2.80954 6.94588 0.01036 4.57488 1.09861 0.40547 52 1.39242 3.45491 0.49978 2.17794 89 G = - < 1.38629 1.38629 1.38629 1.38629 0.04362 8.06863 3.16132 1.46634 0.26236 0.50098 0.93124 53 2.33615 2.79474 0.18083 4.88088 90 G = - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.33562 6.47487 0.04918 3.03673 0.03348 3.41348 54 2.69814 2.06044 5.69092 0.22078 92 U + - _ 1.38629 1.38629 1.38629 1.38629 0.21760 1.63352 8.06733 0.00321 5.74322 0.24397 1.53023 55 4.62832 4.40064 5.47068 0.02660 94 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00128 8.06928 6.94356 1.46634 0.26236 1.09861 0.40547 56 0.60142 2.00729 1.70421 1.99731 95 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06863 8.06863 1.46634 0.26236 0.50007 0.93264 57 0.23608 7.96836 1.77308 3.21575 96 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02327 4.11794 5.00166 0.03802 3.28850 1.09861 0.40547 58 0.12789 2.34061 5.04062 4.05624 98 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01520 8.06285 4.21525 1.46634 0.26236 0.08898 2.46346 59 0.82404 0.96861 3.16340 1.97003 99 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07446 2.88041 4.15750 0.24494 1.52672 2.84284 0.06003 60 2.19648 1.40334 3.52043 0.48867 102 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05536 3.36274 3.95209 0.84258 0.56317 0.02121 3.86391 61 2.70437 0.19055 3.36875 2.62901 106 C = - > 1.38629 1.38629 1.38629 1.38629 0.00064 8.05077 8.05077 1.46634 0.26236 0.03300 3.42773 62 2.17258 0.44535 3.31509 1.56452 107 C = - > 1.38629 1.38629 1.38629 1.38629 0.05833 2.87618 8.06929 0.01107 4.50881 1.09861 0.40547 63 1.25450 1.44580 1.56408 1.30954 109 a = - > 1.38629 1.38629 1.38629 1.38629 0.04718 3.08415 8.06928 0.01362 4.30287 1.09861 0.40547 64 1.32119 1.65940 1.04793 1.64888 111 g = - > 1.38629 1.38629 1.38629 1.38629 0.68957 0.69737 8.06928 0.00126 6.67977 1.09861 0.40547 65 2.61213 8.45753 0.07675 8.16210 113 G = - > 1.38629 1.38629 1.38629 1.38629 0.07486 2.63374 8.06929 0.00870 4.74935 1.09861 0.40547 66 3.62300 0.18497 3.46877 2.19811 115 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01571 4.18178 8.06928 0.04050 3.22663 1.09861 0.40547 67 3.30270 1.47251 4.95057 0.31912 117 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 68 3.55857 0.53378 3.34325 1.05035 118 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 69 1.06955 1.32339 3.16469 1.05446 120 u = - ) 1.38629 1.38629 1.38629 1.38629 0.05073 3.01277 8.06928 0.01269 4.37351 1.09861 0.40547 70 4.91706 0.26014 4.08143 1.58547 122 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00969 4.67439 8.06928 0.06579 2.75403 1.09861 0.40547 71 3.72248 2.86391 8.02340 0.08506 124 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 72 4.20090 0.37647 4.07337 1.26685 125 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00878 8.06834 4.77638 1.46634 0.26236 1.09861 0.40547 73 0.76533 3.10327 0.78700 3.36076 126 a + - : 1.38629 1.38629 1.38629 1.38629 4.74927 7.74500 0.00913 1.46634 0.26236 3.36368 0.03522 74 1.13112 1.65303 1.51838 1.32128 127 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 7.74798 0.00043 75 1.13112 1.65303 1.51838 1.32128 128 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 7.74798 0.00043 76 1.13112 1.65303 1.51838 1.32128 129 a + - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.04452 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch-3h.cm0000644000543100007160000011447212130431360017672 0ustar pchanlowelabINFERNAL1/a [1.1rc2 | December 2012] NAME tRNA1415G-arch-3h STATES 177 NODES 50 CLEN 56 W 66 ALPH RNA RF yes CONS yes MAP yes DATE Sun Apr 7 19:48:28 2013 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone TRNAinf-arch-3h-nc.cm ../trna1415G-arch-3h.sto COM [2] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmcalibrate --hfile cmcalibrate_files/TRNAinf-arch-3h.hfile --sfile cmcalibrate_files/TRNAinf-arch-3h.sfile --qqfile cmcalibrate_files/TRNAinf-arch-3h.qqfile --ffile cmcalibrate_files/TRNAinf-arch-3h.ffile --seed 208 TRNAinf-arch-3h.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 62 EFFN 62.000000 CKSUM 2530168343 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4641 0.72243 ECMLC 0.50837 -8.84685 3.26316 1600000 566025 0.002120 ECMGC 0.51240 -13.42120 -1.57648 1600000 172937 0.002313 ECMLI 0.57917 -5.26030 4.70304 1600000 384817 0.003118 ECMGI 0.54021 -11.15873 -0.41732 1600000 132465 0.003020 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 66 84 -11.123 -11.330 -0.003 -9.744 IL 1 1 2 1 4 1 11 71 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - + - ML 3 2 3 5 3 1 13 66 84 -12.038 -0.001 -10.692 1.751 -1.460 -2.801 -2.988 D 4 2 3 5 3 0 8 65 84 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 10 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - = - ML 6 5 3 8 3 1 12 65 83 -12.038 -0.001 -10.692 -2.614 0.378 0.475 0.197 D 7 5 3 8 3 0 8 64 83 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - = - ML 9 8 3 11 3 1 11 64 82 -12.038 -0.001 -10.692 -5.731 1.688 -0.704 -2.789 D 10 8 3 11 3 0 8 63 82 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - = - ML 12 11 3 14 3 1 10 63 80 -12.038 -0.001 -10.692 -1.126 1.363 -1.146 -0.949 D 13 11 3 14 3 0 7 62 81 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 9 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - = - ML 15 14 3 17 3 1 9 62 79 -12.038 -0.001 -10.692 -0.400 -1.698 0.983 -0.063 D 16 14 3 17 3 0 7 61 80 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 9 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - G - = - ML 18 17 3 20 3 1 8 61 78 -12.038 -0.001 -10.692 -0.597 -1.037 1.247 -1.066 D 19 17 3 20 3 0 6 60 79 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 9 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - u - + - ML 21 20 3 23 3 1 7 59 77 -12.038 -0.534 -1.694 0.441 -0.884 -2.152 0.907 D 22 20 3 23 3 0 6 59 78 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 8 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - G - + - ML 24 23 3 26 3 1 7 59 77 -11.807 -1.688 -0.537 -1.064 -1.354 1.375 -0.896 D 25 23 3 26 3 0 5 56 74 -10.539 -5.652 -0.030 IL 26 26 3 26 3 1 9 61 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 76 - A - * MR 27 26 3 29 3 1 9 59 77 -10.125 -0.005 -8.442 1.971 -5.577 -5.003 -5.251 D 28 26 3 29 3 0 5 56 74 -13.094 -8.272 -0.005 IR 29 29 3 29 3 1 9 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 75 - C - * MR 30 29 3 32 3 1 8 58 76 -10.125 -0.005 -8.442 -5.086 1.962 -5.602 -4.179 D 31 29 3 32 3 0 5 56 74 -13.094 -5.072 -0.044 IR 32 32 3 32 3 1 8 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 74 - C - * MR 33 32 3 35 3 1 7 57 75 -10.258 -0.005 -8.576 -4.007 1.802 -4.810 -1.267 D 34 32 3 35 3 0 5 56 74 -13.056 -0.009 -7.285 IR 35 35 3 35 3 1 3 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 73 - A - + MR 36 35 3 38 3 1 8 56 74 -12.337 -0.001 -10.655 1.157 -2.238 0.158 -1.174 D 37 35 3 38 3 0 0 54 72 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 3 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 71 - C - = MR 39 38 3 41 3 1 7 55 73 -12.337 -0.001 -10.655 -5.945 1.885 -3.230 -2.437 D 40 38 3 41 3 0 0 53 71 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 2 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 70 - G - = MR 42 41 3 44 3 1 6 54 72 -12.337 -0.001 -10.655 -1.887 0.300 1.294 -4.445 D 43 41 3 44 3 0 0 52 70 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 69 - g - = MR 45 44 3 47 3 1 5 53 71 -12.337 -0.001 -10.655 -2.551 0.011 0.998 -0.280 D 46 44 3 47 3 0 0 51 69 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 68 - c - = MR 48 47 3 50 3 1 4 52 70 -12.337 -0.001 -10.655 -1.760 0.870 0.500 -1.112 D 49 47 3 50 3 0 0 50 68 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 67 - g - = MR 51 50 3 53 3 1 3 51 69 -12.337 -0.001 -10.655 -1.233 0.392 0.866 -1.182 D 52 50 3 53 3 0 0 49 67 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 66 - C - = MR 54 53 3 56 3 1 2 50 68 -12.337 -0.001 -10.655 -1.785 1.220 0.168 -1.958 D 55 53 3 56 3 0 0 49 66 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 65 - C - = MR 57 56 3 59 2 1 1 49 67 -12.680 -0.000 -2.222 1.623 -5.516 -0.548 D 58 56 3 59 2 0 0 48 66 -4.432 -0.068 IR 59 59 3 59 2 1 1 50 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 60 59 3 61 117 0 0 48 66 [ BEGL 21 ] - - - - - - S 61 60 1 62 4 0 0 28 45 -1.450 -10.099 -9.506 -0.663 [ MATP 22 ] 11 34 G C = = MP 62 61 1 66 6 2 2 28 46 -10.656 -10.596 -0.007 -9.372 -9.652 -10.047 -5.969 -4.351 -5.918 -0.913 -6.889 -6.068 1.322 -6.436 -5.810 3.458 -6.099 0.596 -2.298 -5.625 -4.029 -4.831 ML 63 61 1 66 6 1 1 27 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 1 66 6 1 1 27 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 1 66 6 0 0 21 38 -15.345 -14.044 -9.841 -10.523 -10.540 -0.004 IL 66 66 5 66 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 12 33 g c = = MP 68 67 6 72 6 2 2 26 44 -10.656 -10.596 -0.007 -9.372 -9.652 -10.047 -5.414 -4.254 -5.306 1.656 -5.507 -6.058 2.440 -5.539 -5.462 2.654 -5.831 -1.835 -1.220 -5.360 -2.870 -4.152 ML 69 67 6 72 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 19 36 -15.345 -14.044 -9.841 -10.523 -10.540 -0.004 IL 72 72 5 72 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 13 32 C G = = MP 74 73 6 78 6 2 2 24 42 -10.656 -10.596 -0.826 -9.372 -9.652 -1.212 -5.718 -5.508 -5.600 0.718 -4.358 -6.259 3.189 -5.078 -5.515 -1.183 -5.945 -3.167 1.745 -5.849 0.096 -4.261 ML 75 73 6 78 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 18 35 -15.345 -14.044 -9.841 -10.523 -10.540 -0.004 IL 78 78 5 78 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 15 30 c g = = MP 80 79 6 84 6 2 2 23 40 -9.843 -9.783 -0.013 -8.559 -8.839 -9.234 -5.628 -5.634 -5.233 -1.684 -3.770 -5.586 2.921 -4.606 -5.254 -1.535 -5.515 -3.560 2.803 -5.624 -1.417 -4.041 ML 81 79 6 84 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 16 33 -15.692 -14.390 -10.187 -10.869 -10.887 -0.003 IL 84 84 5 84 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 16 29 C G = = MP 86 85 6 90 6 2 2 21 38 -9.843 -9.783 -1.101 -8.559 -8.839 -0.925 -7.476 -7.624 -6.580 -3.850 -4.945 -6.611 3.939 -6.162 -6.954 -3.819 -6.646 -5.815 -1.956 -7.376 -2.964 -5.757 ML 87 85 6 90 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 15 32 -15.692 -14.390 -10.187 -10.869 -10.887 -0.003 IL 90 90 5 90 6 1 1 22 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 28 g c = = MP 92 91 6 96 6 2 2 20 37 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 93 91 6 96 6 1 1 19 36 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 18 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 14 32 -15.891 -14.590 -10.387 -11.069 -11.086 -0.002 IL 96 96 5 96 6 1 1 20 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 27 g c = = MP 98 97 6 102 4 2 2 18 35 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 99 97 6 102 4 1 1 18 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 4 1 1 17 34 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 101 97 6 102 4 0 0 14 32 -11.314 -2.934 -2.423 -0.551 IL 102 102 5 102 4 1 1 19 36 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 103 103 6 103 3 1 1 15 34 -4.026 -0.106 -6.726 0.000 0.000 0.000 0.000 [ MATL 29 ] 19 - G - + - ML 104 103 6 106 3 1 1 14 33 -10.472 -0.004 -9.126 -3.604 -4.615 1.681 -0.578 D 105 103 6 106 3 0 0 11 29 -12.876 -8.389 -0.005 IL 106 106 3 106 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 20 - U - + - ML 107 106 3 109 3 1 1 13 31 -10.472 -0.004 -9.126 -3.953 -0.377 -4.732 1.645 D 108 106 3 109 3 0 0 10 28 -12.876 -8.389 -0.005 IL 109 109 3 109 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 21 - a - + - ML 110 109 3 112 3 1 1 11 30 -10.472 -0.305 -2.395 0.821 -0.261 -2.515 0.291 D 111 109 3 112 3 0 0 9 27 -12.876 -8.389 -0.005 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - g - + - ML 113 112 3 115 2 1 1 1 1 * 0.000 0.593 -1.029 0.857 -2.397 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 34 ] - - - - - - S 117 60 1 118 3 0 0 31 49 -12.038 -0.048 -4.957 IL 118 118 2 118 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - g - + - ML 119 118 2 121 3 1 1 31 49 -0.692 -1.395 -10.646 0.530 -2.147 0.666 -0.428 D 120 118 2 121 3 0 0 30 48 -0.263 -4.252 -3.131 IL 121 121 3 121 3 1 1 30 49 -3.867 -0.106 -8.905 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - C - + - ML 122 121 3 124 5 1 1 29 47 -10.983 -0.003 -10.799 -11.011 -11.902 -7.560 1.993 -8.036 -6.576 D 123 121 3 124 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 124 124 3 124 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 40 63 g c = = MP 125 124 3 129 6 2 2 28 46 -12.016 -11.955 -0.003 -10.732 -11.012 -11.407 -6.201 -5.148 -6.083 0.142 -6.025 -6.758 2.422 -6.267 -6.299 2.674 -6.654 0.487 -0.623 -6.043 -0.090 -4.909 ML 126 124 3 129 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 3 129 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 3 129 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 41 61 C G = = MP 131 130 6 135 6 2 2 26 44 -12.016 -11.955 -0.003 -10.732 -11.012 -11.407 -6.364 -6.063 -6.364 0.752 -5.239 -7.206 3.147 -5.890 -6.225 1.033 -6.738 -1.159 1.351 -6.546 -1.940 -4.946 ML 132 130 6 135 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 42 60 G C = = MP 137 136 6 141 6 2 2 24 42 -12.016 -11.955 -0.003 -10.732 -11.012 -11.407 -6.382 -5.059 -6.189 0.342 -6.914 -6.755 1.039 -6.743 -6.582 3.526 -6.830 -2.703 -1.247 -6.069 -1.192 -5.142 ML 138 136 6 141 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 58 G C = = MP 143 142 6 147 6 2 2 22 40 -12.016 -11.955 -0.003 -10.732 -11.012 -11.407 -9.500 -6.563 -10.646 -0.598 -11.142 -7.864 -5.723 -10.552 -7.907 3.896 -8.145 -4.416 -1.485 -8.253 -8.053 -9.432 ML 144 142 6 147 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 57 G C = = MP 149 148 6 153 4 2 2 20 38 -11.123 -11.330 -0.003 -9.744 -9.915 -6.581 -12.063 -4.041 -11.529 -7.755 -5.867 -11.583 -7.947 3.985 -8.143 -4.507 -6.232 -8.218 -8.304 -11.075 ML 150 148 6 153 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 152 148 6 153 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 153 153 5 153 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - U - + - ML 155 154 6 157 3 1 1 17 35 -12.038 -0.001 -10.692 -8.311 -7.441 -9.375 1.996 D 156 154 6 157 3 0 0 19 37 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 48 - U - + - ML 158 157 3 160 3 1 1 16 34 -12.038 -0.001 -10.692 -6.288 -3.438 -7.051 1.959 D 159 157 3 160 3 0 0 18 36 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - C - + - ML 161 160 3 163 3 1 1 15 33 -12.038 -0.001 -10.692 -6.288 1.961 -3.698 -5.813 D 162 160 3 163 3 0 0 17 35 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - + - ML 164 163 3 166 3 1 1 13 32 -12.038 -0.001 -10.692 1.326 -6.814 0.560 -6.714 D 165 163 3 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 52 - A - + - ML 167 166 3 169 3 1 1 12 30 -12.038 -0.001 -10.692 1.995 -8.160 -7.425 -7.557 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 53 - A - + - ML 170 169 3 172 3 1 1 10 29 -12.038 -0.001 -10.692 1.837 -5.474 -1.900 -2.873 D 171 169 3 172 3 0 0 13 32 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 56 - U - + - ML 173 172 3 175 2 1 1 1 1 * 0.000 -5.933 -2.003 -6.677 1.897 D 174 172 3 175 2 0 0 0 0 * 0.000 IL 175 175 3 175 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 176 175 3 -1 0 0 0 0 0 // HMMER3/f [i1.1rc2 | December 2012] NAME tRNA1415G-arch-3h LENG 56 MAXL 103 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Apr 7 19:48:28 2013 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone TRNAinf-arch-3h-nc.cm ../trna1415G-arch-3h.sto NSEQ 62 EFFN 61.125854 CKSUM 2530168343 STATS LOCAL MSV -7.6705 0.72243 STATS LOCAL VITERBI -8.4961 0.72243 STATS LOCAL FORWARD -3.1874 0.72243 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.70267 1.04266 1.24741 1.72575 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 0.00000 * 1 0.17251 2.39789 3.32601 3.45451 1 A + - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 2 3.19007 1.12455 1.05745 1.24935 2 g = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 3 5.34261 0.21609 1.87533 3.31741 3 C = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 4 2.16550 0.44218 2.18101 2.04218 4 C = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 5 1.66319 2.56143 0.70529 1.43001 5 g = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 6 1.79930 2.10516 0.52222 2.12397 7 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 7 1.08089 1.99825 2.87381 0.75790 8 u + - : 1.38629 1.38629 1.38629 1.38629 0.37111 6.46459 1.17612 1.46634 0.26236 1.09861 0.40547 8 2.12221 2.32463 0.43391 2.00662 9 G + - : 1.38629 1.38629 1.38629 1.38629 3.10225 6.09799 0.04835 1.46634 0.26236 0.01005 4.60537 9 3.22410 1.84336 0.24740 3.85877 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.00917 5.38925 5.38925 1.46634 0.26236 6.05435 0.00235 10 1.59139 1.07460 0.88477 3.16745 12 g = - < 1.38629 1.38629 1.38629 1.38629 0.00917 5.38925 5.38925 1.46634 0.26236 6.05435 0.00235 11 2.22695 0.55680 3.26060 1.27033 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.77698 5.38925 0.62429 1.46634 0.26236 6.05435 0.00235 12 3.61796 0.73663 3.43592 0.77167 15 c = - < 1.38629 1.38629 1.38629 1.38629 0.01966 4.63194 4.63194 1.46634 0.26236 6.29580 0.00185 13 4.73447 0.04717 4.72909 3.55933 16 C = - < 1.38629 1.38629 1.38629 1.38629 1.63621 4.63194 0.22873 1.46634 0.26236 6.29580 0.00185 14 1.80090 1.30658 1.07807 1.49676 17 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 6.43455 0.00161 15 1.80087 1.30659 1.07809 1.49675 18 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 1.14608 0.38255 16 3.86610 4.56601 0.22124 1.78894 19 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00917 5.38925 5.38925 1.46634 0.26236 6.05435 0.00235 17 4.11041 1.64818 4.65050 0.24636 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00917 5.38925 5.38925 1.46634 0.26236 6.05435 0.00235 18 0.81802 1.56739 3.11777 1.18466 21 a + - _ 1.38629 1.38629 1.38629 1.38629 0.21633 5.38925 1.66092 1.46634 0.26236 6.05435 0.00235 19 0.97584 2.09855 0.79360 3.03079 25 g + - _ 1.38629 1.38629 1.38629 1.38629 0.56334 5.18420 0.85546 1.46634 0.26236 6.14541 0.00215 20 1.73211 1.21941 1.16143 1.53876 27 g = - > 1.38629 1.38629 1.38629 1.38629 1.64462 4.64036 0.22657 1.46634 0.26236 6.29419 0.00185 21 1.73214 1.21940 1.16142 1.53877 28 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.03133 0.14060 22 3.80159 4.86604 0.04105 4.58778 29 G = - > 1.38629 1.38629 1.38629 1.38629 0.01966 4.63194 4.63194 1.46634 0.26236 6.29580 0.00185 23 0.81726 3.59472 0.69927 3.38294 30 g = - > 1.38629 1.38629 1.38629 1.38629 0.01966 4.63194 4.63194 1.46634 0.26236 1.53083 0.24380 24 1.53335 3.43765 0.45239 2.15467 32 G = - > 1.38629 1.38629 1.38629 1.38629 0.00917 5.38925 5.38925 1.46634 0.26236 6.05435 0.00235 25 3.40977 0.92094 1.05226 1.51567 33 c = - > 1.38629 1.38629 1.38629 1.38629 0.00917 5.38925 5.38925 1.46634 0.26236 6.05435 0.00235 26 4.08228 0.37207 1.81955 2.02704 34 C = - > 1.38629 1.38629 1.38629 1.38629 0.00917 5.38925 5.38925 1.46634 0.26236 0.00471 5.36120 27 1.01908 2.87130 0.92511 1.68221 35 g + - - 1.38629 1.38629 1.38629 1.38629 0.91450 0.51462 6.46459 0.06660 2.74220 1.09861 0.40547 28 6.61012 0.00499 6.93970 5.92933 39 C + - - 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 29 2.61800 1.08798 0.71861 2.27571 40 g = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 30 2.22531 0.58739 1.84890 1.72159 41 C = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 31 2.48546 2.03937 0.31503 2.86761 42 G = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 32 3.15853 6.31503 0.06988 3.76378 44 G = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 33 5.28876 6.37957 0.00845 6.39491 45 G = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 34 7.12433 6.52489 7.85941 0.00266 46 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 35 5.72642 3.76674 6.25446 0.02872 48 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 36 5.73177 0.02738 3.94939 5.40244 49 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 37 0.46694 6.09398 0.99856 6.02479 50 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 38 0.00371 7.02908 6.52032 6.61220 52 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 39 0.11304 5.16640 2.70277 3.37669 53 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 40 5.48048 2.77413 5.99599 0.07156 56 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 41 6.40405 0.01061 6.29727 4.95343 57 C = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 42 3.76677 0.07242 6.20648 3.10734 58 C = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 43 3.54651 0.32552 1.85024 2.38787 60 C = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 44 1.81358 2.04003 0.56161 1.99057 61 G = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 45 3.12688 0.91203 0.92975 1.83392 63 c = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 46 2.92449 0.26170 5.19644 1.76589 65 C = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 47 2.62107 0.54133 1.27060 2.73894 66 C = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 48 2.23899 1.11565 0.78678 2.20343 67 g = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 49 2.60260 0.78407 1.04006 2.15467 68 c = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 50 3.14755 1.37886 0.69465 1.58023 69 g = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 51 2.69230 1.17962 0.48900 4.45311 70 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 52 5.49253 0.08008 3.62520 3.07478 71 C = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 53 0.58510 2.93418 1.27726 2.19846 73 A + - : 1.38629 1.38629 1.38629 1.38629 0.84250 5.85674 0.56827 1.46634 0.26236 1.09861 0.40547 54 4.14808 0.13803 4.70601 2.26244 74 C * - : 1.38629 1.38629 1.38629 1.38629 0.01448 4.93514 4.93514 1.46634 0.26236 5.29852 0.00501 55 4.89768 0.02704 5.25700 4.26816 75 C * - : 1.38629 1.38629 1.38629 1.38629 0.01448 4.93514 4.93514 1.46634 0.26236 5.29852 0.00501 56 0.02012 5.23483 4.83771 5.01021 76 A * - : 1.38629 1.38629 1.38629 1.38629 0.00727 4.92792 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal.i1p0000644000543100007160000120176413054731276020772 0ustar pchanlowelabZAla =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))): GAGGgcUUAGCUUAAUUauuAAAGUGuuUGAUUUGCAUUCAguUGgggggggaaaagggggggAUGUAAGAUAuAgUCUUGCAGUCCUUA""""JJ$"""""JJ$"CCCCCCCC =""""JJ""""""JJ"CCCCCCC{"9""JJ"""""JJ""CCCCCCCC"""J"4""y""J""CCCCCCcCS"""J"K""""J"K"CCCCCCCCW"b""J"""b""J""CCCCCCC"\""J"""W""J""CCCCCCCKH"""J"""""J""CXCCCCC"""J""""""J""CCCCCCC"""JJ""""JJ""CCCCCCC"""JJ>""""JJ@"CCCCCHC"""JJ""""JJ""CCCCCCCX@ i9+:-zR2L~R}SB3l$WV z@(x\xA5?9x_9x!#[u9yJ=W9y:K{@-%f@P<@q-@-kxI;(-;xPH):x::x1g~nJpYI4rku*BG1 JY)| G6|yGF8.G.7Zi,g44xsbk1>e6/3^/U4/MAU/Lj+&_uTapkN_8vB66wTf, m,c~@;. , n"s,2Z IS _S$rCGBnO*8E.c-R#sEoBan[H]%0G5a33Ea3-&aruVQjm9wS(HQ~[agumQ{PP*ksB G7Gxr%Ggb9GhX"o% ,CZM!tWouGoQoHgbG.G@4C@Xj 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M?˳B?Q?mB?O$?:J?O?T+&?ϕO?=?P?v ?X(?M?l[>6?l=Y#3??a$?#=?$?Iz? >̽>S?C#?>V=q?_??=#= ?dY?-A=;>?iHt?={>q?w65?X*>>џ?J?&?Dv,?\?..?\-?\?ț?%1^?,?08?=jJ?hO/?5?7> =M0? 1?"I?s>#=;>VV?#==>&j?#=ƛ?o?v=`=D?(?_ >b% >5D?c?1?CZ?xE?b2?E?U??G?E?L ?ذ>4??*?q?R>??1?(?]?? `=Z?T? |?`b=#-?G??%>1?PG??`>v=G?? ?%?G?>H]?G}=G?T|?v?MR>UG?V?J??j]G?t4?3ܜ?T?ѢT???>z?6>9:?!|? ?7=1?/?G?1?ő>ښ >??z> D?8.?aj>nݛ=5\?c?f>>^\??o??\???Q2?H\?3?>41?\?D?`??y\?/N?_֖>>[?!?>C;>??s>{{x??w?f=Rf?ì?i?>!>wTe?}\>>s>:Ve?V?=>>Ve?i?W>@>ETe?(;?>L>Me?*]?"?^?$?e?FoQ??Wa?d"e?$9p?J}?lO?>6?\?ڍ>rf?>?;?6?.=s>M>B ?s>i>?=bd?%g>6\?B?>mi>s??'/= >}f?N?s^K?8>`?N?_$?q?W^?3M?>*D?]?6?[N?7?^?z"?>?U`?GQ?*>v>h?Y?=I?k?P{?@>??f?Iy?t.>Ѷ>r?06?0>=?N?d|>=>ږ?~q?݃=qw >r?bL?g9>>ϙ?ID?E? ?垊??d?fk?)y?ը?O?68?8-?>?Q?"5>:?ھ> p???b>=ak*>?==$=>Bw]?L=5?6?@b>">}?u?o>@>}?ГN?py?++?C}? -?6y?b#?}???XS?>}?j?˅B?*?}?BX?I:?ƭd?N?d?#=ܔ ?+?*H?>6>61?]?i>>4=r??(t`>>=?R9>?{>=>t?Y?0=P;b>t??z>>?>>r>=?>:>??[??}p?a"|?.>t@?@P?oy,?|>`=F_.?dx?J?C>>Q>O@?>>>y],?> }?]o?p=$>~n?{?Ӳ>=(n?{?K?H8?9n?Rx?V?o=?{@n?9C?5`?Ք>An?dy?J;h?U?@n?g?jwD?r?|i?"g?͒>6?g?ko?~>>D7g?2?> B>9u?QK?^b=>#i?a?`>~>"i?-?a>=i?9?)>J>i?>>0=i??m`?7>͸i?M>j?i>~i??h??>}r?HF?F7?h?Y>~gD?a?fy?~>~>W{?]?~>>>>A>>m?yy?KX>oN>iMw??l_>>`w?k?zOq?F6?iw?x^?H?tU?Glw?~H??C?lw?Ng?K/m?r^?Hlw?TY??ȹ3?I@?o?Ƅo>`>j_?`k?r8>?,c?U*?h>? y?J?6SV>R8>Ry?)?W>r8>Sy?wn? 6d>E>,Sy?~?Y>>Qy??>XZ>Ny?8l?h?q>Hy?ƶ?i?2?q:y? KH?jh?s^?8>R-m?Ìc?C>?F>.\?FS?dr?pH>r8>Ե>`j?r8>#/k>kE>x2?e>$w?I???5;$~?5;$~?5;$~?OǀOǀOǀOǀOǀO?tRNAscan-SE-2.0/lib/models/TRNA2-bact.cm0000644000543100007160000013445311021467310016746 0ustar pchanlowelab### cove V2 75 nodes ### node 0 type 6 1 -1 0.17391 0.00000 0.00000 0.77470 0.04743 0.00395 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.00000 0.66667 0.06667 0.06667 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.13333 0.06667 0.66667 0.13333 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 3 2 -1 0.95833 0.00000 0.00000 0.02083 0.00000 0.02083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00483 0.00000 0.00000 0.99034 0.00000 0.00483 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.98558 0.00481 0.00481 0.00481 # MATR ### node 2 type 3 3 -1 0.95833 0.00000 0.00000 0.02083 0.00000 0.02083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00483 0.00000 0.00000 0.99034 0.00000 0.00483 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00481 0.98558 0.00481 0.00481 # MATR ### node 3 type 3 4 -1 0.06250 0.00000 0.00000 0.91667 0.00000 0.02083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00483 0.00000 0.00000 0.99034 0.00000 0.00483 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00481 0.98558 0.00481 0.00481 # MATR ### node 4 type 3 5 -1 0.14286 0.42857 0.14286 0.14286 0.00000 0.14286 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.97222 0.00397 0.01190 0.00000 0.00794 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.33333 0.16667 0.16667 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 # INSL 0.20000 0.40000 0.20000 0.20000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.62550 0.03984 0.21912 0.11554 # MATR ### node 5 type 1 6 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00395 0.98024 0.00395 0.00395 0.00395 0.00395 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.12500 0.37500 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00380 0.00380 0.00380 0.03802 # MATP 0.03042 0.00380 0.06844 0.01141 # MATP 0.00380 0.69962 0.00380 0.06084 # MATP 0.05703 0.00380 0.00380 0.00380 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.16667 0.33333 0.16667 0.33333 # MATR ### node 6 type 1 7 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.02264 # MATP 0.00377 0.00377 0.33208 0.00377 # MATP 0.00377 0.52830 0.00755 0.03019 # MATP 0.03396 0.00377 0.01132 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 7 type 1 8 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.15472 # MATP 0.00377 0.00377 0.29057 0.00377 # MATP 0.00377 0.35094 0.00377 0.07170 # MATP 0.08679 0.00377 0.00755 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 8 type 1 9 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.06415 # MATP 0.00377 0.00377 0.28302 0.00377 # MATP 0.00377 0.47170 0.00377 0.01887 # MATP 0.10189 0.00377 0.02264 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 9 type 1 10 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.01132 0.00377 0.19623 # MATP 0.00377 0.00377 0.33585 0.00755 # MATP 0.00377 0.32453 0.00377 0.02264 # MATP 0.04528 0.00377 0.02642 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 10 type 1 11 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.97647 0.00392 0.00392 0.00784 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.20000 0.20000 0.40000 0.20000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.21509 # MATP 0.00377 0.00377 0.21887 0.00755 # MATP 0.00377 0.23396 0.00377 0.00377 # MATP 0.23774 0.00755 0.04528 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 11 type 1 12 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00791 0.00000 0.98419 0.00000 0.00395 0.00395 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.23774 # MATP 0.00377 0.00377 0.02642 0.00377 # MATP 0.00377 0.41132 0.00377 0.03396 # MATP 0.24906 0.00377 0.00377 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 12 type 2 13 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00797 0.00000 0.98805 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00397 0.00397 0.00794 0.98413 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 2 14 -1 0.66667 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99600 0.00000 0.00000 0.00000 0.00400 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.68254 0.03175 0.26587 0.01984 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 14 type 0 15 28 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 15 type 4 16 -1 0.00395 0.98814 0.00395 0.00395 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 16 type 1 17 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.00755 # MATP 0.00377 0.00377 0.06038 0.00377 # MATP 0.00377 0.83396 0.00377 0.04151 # MATP 0.01509 0.00377 0.00377 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 17 type 1 18 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.05660 # MATP 0.00377 0.00377 0.70566 0.00377 # MATP 0.00377 0.00755 0.00755 0.00377 # MATP 0.17358 0.00377 0.01132 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 18 type 1 19 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.02264 # MATP 0.00377 0.00755 0.12830 0.00377 # MATP 0.01132 0.24151 0.00377 0.00377 # MATP 0.54717 0.00377 0.00755 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 19 type 1 20 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00395 0.00000 0.98814 0.00000 0.00395 0.00395 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.13962 0.00377 0.00377 0.01887 # MATP 0.00755 0.00377 0.59245 0.00755 # MATP 0.12830 0.00377 0.00755 0.00377 # MATP 0.01887 0.00377 0.04528 0.01132 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 20 type 2 21 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.97628 0.00791 0.00791 0.00791 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01190 0.00000 0.98413 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20553 0.01186 0.77470 0.00791 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.60000 0.00000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.28000 0.00000 0.71600 0.00000 0.00400 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03984 0.33068 0.03187 0.59761 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.01351 0.00000 0.97297 0.00000 0.01351 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00552 0.00000 0.83978 0.00000 0.15470 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03226 0.00000 0.90323 0.00000 0.06452 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03125 0.25000 0.03125 0.68750 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06593 0.17582 0.00549 0.75275 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 25 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.98419 0.00791 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 2 26 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.98814 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.52381 0.00000 0.47222 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00685 0.00000 0.81507 0.00000 0.17808 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.21769 0.08844 0.12245 0.57143 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06324 0.17787 0.09881 0.66008 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99602 0.00000 0.00000 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.87747 0.00395 0.10672 0.01186 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 5 29 -1 0.00794 0.00000 0.98810 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 2 30 -1 0.66667 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99600 0.00000 0.00000 0.00000 0.00400 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.55159 0.03175 0.38095 0.03571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 30 type 0 31 44 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 31 type 4 32 -1 0.00395 0.98814 0.00395 0.00395 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 32 type 1 33 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.15472 # MATP 0.01132 0.00377 0.48302 0.00755 # MATP 0.01132 0.06792 0.00377 0.04151 # MATP 0.16981 0.00755 0.01887 0.00755 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 33 type 1 34 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.15094 # MATP 0.00377 0.00377 0.50566 0.00377 # MATP 0.00377 0.06038 0.00377 0.02264 # MATP 0.20377 0.00377 0.01132 0.01132 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 34 type 1 35 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00755 0.00377 0.00377 0.15849 # MATP 0.00377 0.00377 0.20000 0.00377 # MATP 0.00377 0.29057 0.00377 0.00755 # MATP 0.29811 0.00377 0.00377 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 35 type 1 36 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.01509 # MATP 0.00377 0.00377 0.21887 0.00377 # MATP 0.00377 0.69057 0.00377 0.02642 # MATP 0.00377 0.00377 0.00377 0.00755 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 36 type 1 37 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00395 0.00000 0.98814 0.00000 0.00395 0.00395 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00755 0.00377 0.30943 # MATP 0.00377 0.00377 0.36981 0.00377 # MATP 0.00377 0.18491 0.00377 0.00755 # MATP 0.07925 0.00377 0.00755 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01976 0.64822 0.00395 0.32806 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.00395 0.98814 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03162 0.24506 0.34387 0.37945 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 41 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.30830 0.19763 0.24901 0.24506 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 2 42 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21344 0.25296 0.20949 0.32411 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.80632 0.00395 0.18577 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99602 0.00000 0.00000 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.68775 0.20158 0.00791 0.10277 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 5 45 -1 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 2 46 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.00000 0.82937 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.33992 0.19763 0.25296 0.20949 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 2 47 -1 0.97674 0.00000 0.00000 0.00000 0.02326 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.98571 0.00000 0.00000 0.00000 0.01429 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.75000 0.00000 0.00000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.50000 0.16667 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16038 0.02358 0.68396 0.13208 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 47 type 0 48 60 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 48 type 4 49 -1 0.78261 0.20553 0.00791 0.00395 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 49 type 1 50 -1 0.97537 0.00493 0.00493 0.00493 0.00493 0.00493 0.01754 0.91228 0.01754 0.01754 0.01754 0.01754 0.28571 0.14286 0.14286 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01493 0.01493 0.04478 0.16418 # MATP 0.01493 0.01493 0.04478 0.01493 # MATP 0.01493 0.35821 0.08955 0.10448 # MATP 0.04478 0.01493 0.02985 0.01493 # MATP 0.20000 0.40000 0.20000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 50 type 1 51 -1 0.97549 0.00490 0.00490 0.00490 0.00490 0.00490 0.03509 0.89474 0.01754 0.01754 0.01754 0.01754 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01493 0.01493 0.01493 0.05970 # MATP 0.01493 0.01493 0.23881 0.01493 # MATP 0.01493 0.23881 0.02985 0.01493 # MATP 0.26866 0.01493 0.01493 0.01493 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 51 type 1 52 -1 0.97561 0.00488 0.00488 0.00488 0.00488 0.00488 0.28571 0.64286 0.01786 0.01786 0.01786 0.01786 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01515 0.01515 0.01515 0.07576 # MATP 0.01515 0.03030 0.42424 0.01515 # MATP 0.01515 0.10606 0.03030 0.04545 # MATP 0.09091 0.01515 0.07576 0.01515 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 52 type 1 53 -1 0.97727 0.00455 0.00455 0.00455 0.00455 0.00455 0.36585 0.53659 0.02439 0.02439 0.02439 0.02439 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03922 0.01961 0.01961 0.09804 # MATP 0.03922 0.01961 0.31373 0.01961 # MATP 0.01961 0.19608 0.01961 0.01961 # MATP 0.09804 0.01961 0.03922 0.01961 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 53 type 1 54 -1 0.97863 0.00427 0.00427 0.00427 0.00427 0.00427 0.33333 0.51852 0.03704 0.03704 0.03704 0.03704 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.02703 0.02703 0.02703 0.10811 # MATP 0.05405 0.02703 0.05405 0.02703 # MATP 0.02703 0.32432 0.02703 0.10811 # MATP 0.02703 0.05405 0.05405 0.02703 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 54 type 1 55 -1 0.97934 0.00413 0.00413 0.00413 0.00413 0.00413 0.47368 0.31579 0.05263 0.05263 0.05263 0.05263 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03448 0.03448 0.03448 0.10345 # MATP 0.03448 0.03448 0.06897 0.03448 # MATP 0.06897 0.24138 0.03448 0.03448 # MATP 0.03448 0.03448 0.13793 0.03448 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 55 type 1 56 -1 0.80242 0.00000 0.15726 0.00000 0.00403 0.03629 0.11111 0.00000 0.22222 0.00000 0.11111 0.55556 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.06667 0.00000 0.86667 0.00000 0.00000 0.06667 0.25000 0.25000 0.25000 0.25000 # INSL 0.50000 0.18750 0.06250 0.25000 # INSR 0.04762 0.04762 0.04762 0.04762 # MATP 0.04762 0.04762 0.09524 0.04762 # MATP 0.04762 0.04762 0.04762 0.04762 # MATP 0.14286 0.04762 0.09524 0.09524 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 56 type 2 57 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01852 0.00000 0.96296 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.07273 0.45455 0.38182 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 2 58 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01852 0.00000 0.96296 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23636 0.21818 0.03636 0.50909 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.18519 0.00000 0.77778 0.00000 0.03704 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.61818 0.16364 0.05455 0.16364 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 -1 -1 0.99522 0.00000 0.00000 0.00000 0.00478 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.97727 0.00000 0.00000 0.00000 0.02273 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.52174 0.17391 0.17391 0.13043 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 5 61 -1 0.06746 0.00000 0.92857 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 61 type 2 62 -1 0.05263 0.00000 0.89474 0.00000 0.05263 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00424 0.00000 0.22458 0.00000 0.77119 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00543 0.00000 0.98913 0.00000 0.00543 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02162 0.03784 0.03243 0.90811 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08861 0.02532 0.78481 0.10127 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 62 type 2 63 -1 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00394 0.98425 0.00394 0.00394 0.00394 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00791 0.77075 0.01186 0.20949 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 63 type 1 64 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.21132 # MATP 0.00377 0.00377 0.07547 0.00377 # MATP 0.00377 0.37736 0.00377 0.27547 # MATP 0.01132 0.00377 0.00377 0.01132 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 64 type 1 65 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00755 0.00377 0.14340 # MATP 0.00377 0.00755 0.35094 0.00377 # MATP 0.00377 0.18868 0.00377 0.09811 # MATP 0.11321 0.00377 0.05660 0.00755 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 65 type 1 66 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.01132 0.00377 0.21887 # MATP 0.00377 0.00377 0.22264 0.00755 # MATP 0.00377 0.34340 0.00377 0.04906 # MATP 0.10566 0.00377 0.01132 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 66 type 1 67 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00392 0.98039 0.00392 0.00392 0.00392 0.00392 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00755 0.00377 0.11698 # MATP 0.00377 0.00377 0.00755 0.00377 # MATP 0.00377 0.82264 0.00377 0.00377 # MATP 0.00377 0.00377 0.00377 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 67 type 1 68 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00395 0.00000 0.98814 0.00000 0.00395 0.00395 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00377 0.00377 0.00377 0.00755 # MATP 0.00377 0.00377 0.00377 0.00377 # MATP 0.00377 0.92830 0.00755 0.01132 # MATP 0.00377 0.00377 0.00377 0.00377 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00794 0.00000 0.98810 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.00395 0.98814 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00398 0.00000 0.99203 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00397 0.00397 0.00397 0.98810 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.98814 0.00395 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 72 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.31225 0.00395 0.67984 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 72 type 2 73 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00794 0.00000 0.98810 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.98814 0.00395 0.00395 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 73 type 2 74 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01594 0.00000 0.98008 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.38095 0.03968 0.38095 0.19841 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 74 type 2 -1 -1 0.80000 0.00000 0.00000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99597 0.00000 0.00000 0.00000 0.00403 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00800 0.16000 0.00400 0.82800 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-SerTGA.cm0000644000543100007160000017251512573631650021477 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Ser-TGA-2nd-align STATES 289 NODES 76 CLEN 90 W 103 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:59 2015 COM [1] cmbuild --hand --enone Ser-TGA-final-vert.cm ../Ser-TGA-2nd-align.sto COM [2] cmcalibrate --seed 208 Ser-TGA-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 3239661816 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8102 0.71866 ECMLC 0.64047 -8.11089 1.91347 1600000 736994 0.001628 ECMGC 0.29998 -49.45397 -33.66675 1600000 45587 0.008774 ECMLI 0.63202 -7.89077 2.19392 1600000 703492 0.001706 ECMGI 0.31457 -45.33135 -30.35719 1600000 44441 0.009001 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 103 132 -15.013 -16.259 -0.001 -10.874 IL 1 1 2 1 4 19 42 104 133 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 43 105 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - G - + MR 3 2 3 5 5 25 50 103 132 -15.061 -0.013 -14.877 -6.861 -15.981 -1.099 -11.034 1.799 -4.221 D 4 2 3 5 5 16 38 101 130 -5.918 -1.273 -3.544 -1.489 -2.970 IR 5 5 3 5 5 18 41 103 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 a u = = MP 6 5 3 10 6 26 49 102 131 -15.983 -15.922 -0.000 -14.699 -14.979 -15.374 -3.799 2.155 -2.878 2.308 -14.361 -15.515 -9.819 -12.263 -11.780 0.981 -3.710 2.115 -9.744 -13.525 -11.650 -10.818 ML 7 5 3 10 6 17 39 101 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 42 100 129 -10.710 -9.439 -3.962 -9.417 -0.109 -7.631 -4.282 -3.901 -5.085 1.946 D 9 5 3 10 6 14 36 98 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 40 102 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 41 102 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 A U = = MP 12 11 6 16 6 25 47 100 129 -15.984 -15.923 -0.000 -14.699 -14.979 -15.374 -12.026 -10.686 -12.221 3.918 -14.361 -15.516 -9.819 -12.263 -11.781 -7.347 -12.451 -0.194 -9.744 -13.526 -11.650 -10.819 ML 13 11 6 16 6 17 39 99 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 42 99 128 -10.652 -9.381 -0.079 -9.359 -4.493 -7.572 -4.754 1.951 -5.316 -3.834 D 15 11 6 16 6 14 35 96 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 40 100 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 40 99 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 G C = = MP 18 17 6 22 6 23 45 98 127 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.967 -10.551 -16.490 -0.556 -15.578 -3.115 -9.855 -15.856 -11.923 3.926 -12.111 -8.491 -10.225 -12.174 -12.314 -15.697 ML 19 17 6 22 6 17 39 97 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 38 96 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 35 94 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 40 98 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 40 97 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 A U = = MP 24 23 6 28 6 21 43 96 125 -6.031 -15.935 -0.022 -14.712 -14.991 -15.387 -12.038 -3.344 -12.233 3.743 -14.374 -15.529 -9.832 -12.276 -11.793 0.116 -12.463 0.151 -3.522 -13.539 -11.663 -2.120 ML 25 23 6 28 6 17 38 95 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 38 94 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 35 92 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 42 95 124 -6.809 -7.072 -0.032 -8.728 -9.504 -9.164 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 39 95 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 96 A U = = MP 30 29 6 34 6 19 41 94 123 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.035 -5.189 -3.808 3.733 -14.365 -15.501 -9.820 -12.274 -11.792 -0.013 -12.461 0.192 -2.762 -13.527 -2.023 -3.796 ML 31 29 6 34 6 16 38 93 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 38 93 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 35 90 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 39 94 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 39 93 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 95 A U = = MP 36 35 6 40 6 17 39 92 121 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.027 -10.688 -5.940 3.679 -14.294 -15.374 -2.058 -12.264 -11.787 0.760 -12.452 0.176 -9.702 -13.482 -4.470 -4.066 ML 37 35 6 40 6 16 37 91 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 37 91 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 35 89 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 38 92 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 38 92 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 94 G C = = MP 42 41 6 46 4 16 37 90 119 -15.219 -15.426 -0.346 -2.229 -9.967 -8.606 -9.786 0.829 -10.917 -10.382 -2.638 -10.476 -4.572 3.709 -4.293 -1.237 -1.351 -5.198 -7.991 -4.658 ML 43 41 6 46 4 15 36 90 119 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 36 89 118 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 34 88 117 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 37 91 120 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 37 91 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 14 36 89 117 -15.783 -0.000 -14.437 0.613 -3.947 -2.286 1.138 D 49 47 6 50 3 12 34 87 115 -15.320 -4.840 -0.051 IL 50 50 3 50 3 14 36 90 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 13 35 88 116 -16.451 -0.000 0.878 -4.821 1.053 -4.272 D 52 50 3 53 2 12 34 87 115 -13.530 -0.000 IL 53 53 3 53 2 14 35 88 117 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 34 87 115 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 57 86 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 57 86 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 39 68 -0.014 -14.123 -6.742 -14.171 [ MATP 15 ] 11 33 g c = = MP 58 57 1 62 6 2 3 39 68 -15.983 -15.922 -0.000 -14.698 -14.978 -15.373 -0.095 -4.817 -0.644 1.688 -3.474 -10.365 -5.966 -10.460 -3.766 2.799 -5.588 1.148 -2.154 -6.963 0.508 -2.921 ML 59 57 1 62 6 1 1 37 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 37 66 -10.758 -9.487 -5.395 -9.465 -0.047 -7.678 0.940 -3.559 0.915 -3.162 D 61 57 1 62 6 0 0 34 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 38 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 38 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 32 C G = = MP 64 63 6 68 6 2 3 37 66 -15.983 -15.922 -0.008 -14.698 -7.537 -15.373 -13.035 -13.317 -12.352 -9.553 -5.253 -12.496 3.883 -11.618 -12.456 -9.525 -12.576 -11.721 -0.296 -12.869 -1.319 -11.257 ML 65 63 6 68 6 1 1 35 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 36 65 -10.758 -9.487 -0.073 -9.465 -4.599 -7.678 0.880 -2.104 -2.302 0.786 D 67 63 6 68 6 0 0 32 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 36 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 36 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 31 A U = = MP 70 69 6 74 6 2 3 35 64 -15.988 -15.928 -0.000 -14.704 -14.984 -15.379 -4.033 -4.014 -3.550 3.938 -14.367 -15.522 -9.825 -12.268 -11.786 -3.070 -12.456 -2.199 -9.749 -13.531 -11.655 -2.996 ML 71 69 6 74 6 1 1 34 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 33 62 -10.034 -8.763 -4.671 -8.741 -0.078 -6.954 -3.966 1.917 -4.659 -3.046 D 73 69 6 74 6 0 0 31 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 34 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 34 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 30 u a = = MP 76 75 6 80 4 2 3 33 62 -15.211 -15.418 -0.000 -13.832 -3.001 -12.808 -12.277 -9.008 -10.734 -12.533 -1.580 -11.592 2.565 -2.098 -4.137 -1.072 2.938 -12.803 -0.148 -1.808 ML 77 75 6 80 4 1 1 32 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 32 61 -8.037 -7.066 -0.111 -3.994 1.932 -4.310 -3.786 -4.023 D 79 75 6 80 4 0 0 30 59 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 33 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 33 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 31 60 -16.128 -0.005 -8.263 1.661 -9.872 -1.376 -1.149 D 83 81 6 84 3 0 0 29 57 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 32 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - + - ML 85 84 3 87 3 1 1 30 59 -16.124 -0.058 -4.668 0.704 -4.799 1.040 -1.843 D 86 84 3 87 3 0 0 27 55 -9.428 -4.941 -0.050 IL 87 87 3 87 3 1 1 31 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 29 58 -16.066 -2.565 -0.267 -0.269 -1.657 -0.672 1.154 D 89 87 3 90 3 0 0 26 55 -13.000 -8.513 -0.004 IL 90 90 3 90 3 1 1 32 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 30 59 -1.416 -0.678 -12.156 -1.207 -2.036 -1.505 1.571 D 92 90 3 93 3 0 0 26 55 -17.293 -0.090 -4.048 IL 93 93 3 93 3 1 1 31 59 -1.019 -0.983 -10.482 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - + - ML 94 93 3 96 3 1 1 26 55 -16.054 -0.007 -7.641 -2.142 -3.584 1.883 -10.656 D 95 93 3 96 3 0 0 22 51 -13.248 -2.789 -0.226 IL 96 96 3 96 3 1 1 27 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - + - ML 97 96 3 99 3 1 1 25 54 -16.058 -0.111 -3.757 -2.103 -11.599 1.894 -4.280 D 98 96 3 99 3 0 0 15 44 -13.175 -8.688 -0.004 IL 99 99 3 99 3 1 1 27 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 25 53 -2.808 -0.222 -14.601 -2.360 -1.142 -4.097 1.720 D 101 99 3 102 3 0 0 11 40 -14.472 -0.003 -8.864 IL 102 102 3 102 3 1 1 27 55 -0.928 -1.076 -11.618 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 -1.657 -2.230 -1.019 1.574 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - G - + - ML 109 108 2 111 5 1 1 26 45 -15.062 -0.001 -14.877 -10.858 -15.981 -0.606 -3.833 1.560 -1.628 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 35 52 g c = = MP 112 111 3 116 6 2 2 25 44 -15.995 -6.216 -0.020 -14.711 -14.991 -15.386 -4.458 -4.376 -3.331 1.722 -4.499 -4.778 -1.859 -2.753 -1.209 2.620 -10.391 2.266 -1.494 -6.320 -3.176 -2.873 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -7.749 -6.478 -2.387 -6.456 -0.430 -4.670 -0.402 -0.632 -1.046 1.080 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 24 43 -5.798 -0.041 -9.309 -7.477 -8.582 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 50 u a = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -10.305 -10.006 -10.304 -1.921 -4.357 -11.146 2.343 -5.351 -10.162 -3.357 -10.675 -5.147 2.623 -4.843 1.849 -0.595 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -7.749 -6.478 -2.387 -6.456 -0.430 -4.670 1.233 -1.148 -0.890 -0.603 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 49 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -13.047 -13.329 -12.365 -9.566 -10.715 -12.509 -0.430 -11.630 -12.468 -9.538 -3.670 -11.733 3.843 -12.881 -0.630 -2.526 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -7.749 -6.478 -2.387 -6.456 -0.430 -4.670 1.233 -1.148 -0.890 -0.603 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 48 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -12.069 -10.689 -12.274 1.208 -14.390 -14.980 -9.818 -12.317 -2.947 3.557 -12.446 0.723 -9.758 -13.450 -11.667 -2.893 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 41 -7.749 -6.478 -0.734 -6.456 -1.590 -4.670 -0.381 0.877 -1.113 -0.099 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 47 G C = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -12.411 -6.047 -12.721 1.903 -14.442 -4.258 -9.541 -12.809 -11.792 3.561 -12.253 -1.695 -9.657 -12.657 -11.576 -3.661 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.128 -0.000 -14.782 -11.944 1.825 -12.518 -1.131 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.975 -5.086 -5.951 -5.405 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 47 65 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 3 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 53 - u - + - ML 166 165 2 168 3 1 2 47 65 -16.128 -0.082 -4.175 0.582 -1.559 -1.402 0.836 D 167 165 2 168 3 0 1 46 64 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 54 - U - + - ML 169 168 3 171 2 1 1 46 64 -16.702 -0.000 -1.015 -1.521 -0.048 1.130 D 170 168 3 171 2 0 0 45 63 -11.745 -0.000 IL 171 171 3 171 2 1 2 47 65 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 45 63 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 44 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 55 72 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 38 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 56 71 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 36 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 57 70 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 58 69 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 59 68 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 60 67 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 11 30 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 61 66 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 29 -15.432 -15.113 -4.820 -0.052 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - U - + - ML 216 215 6 218 3 1 1 13 32 -11.370 -0.002 -10.025 -7.188 -6.494 -8.140 1.992 D 217 215 6 218 3 0 0 7 26 -17.493 -13.006 -0.000 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.370 -0.002 -10.025 -7.188 -6.494 -8.140 1.992 D 220 218 3 221 3 0 0 6 25 -17.493 -13.006 -0.000 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.370 -4.474 -0.067 -7.188 -6.494 -8.140 1.992 D 223 221 3 224 3 0 0 5 24 -17.493 -13.006 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 27 46 -16.128 -0.000 -14.782 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 73 - A - + - ML 231 230 2 233 3 1 1 27 46 -4.495 -0.065 -14.782 1.358 -2.640 -0.818 -0.495 D 232 230 2 233 3 0 0 26 44 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 27 45 -6.374 -0.020 -9.074 0.000 0.000 0.000 0.000 [ MATL 62 ] 75 - U - + - ML 234 233 3 236 5 1 1 26 44 -15.062 -0.000 -14.877 -15.089 -15.981 0.200 -1.025 -3.163 1.169 D 235 233 3 236 5 0 0 26 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 76 93 G C = = MP 237 236 3 241 6 2 2 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.821 -10.557 -15.736 -2.770 -15.509 -11.754 -9.854 -15.355 -11.918 3.977 -12.123 -3.214 -10.204 -12.208 -12.283 -14.649 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 77 92 G U = = MP 243 242 6 247 6 2 2 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.730 -5.246 -11.820 1.290 -13.573 -13.696 -8.833 -12.031 -3.812 2.018 -12.174 3.174 -2.237 -3.318 -10.756 -3.906 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 78 91 G U = = MP 249 248 6 253 6 2 2 21 39 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -9.968 -5.530 -9.792 0.371 -10.805 -5.654 0.257 -10.443 -1.397 1.455 -10.469 3.192 -0.617 -2.383 -1.563 -5.405 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 79 90 G C = = MP 255 254 6 259 6 2 2 19 37 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.590 -10.566 -14.942 0.148 -15.391 -11.852 -9.853 -14.742 -11.909 3.878 -12.145 -2.410 -10.167 -12.271 -12.229 -13.700 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 80 89 G C = = MP 261 260 6 265 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -13.126 -2.950 -13.881 -7.671 -15.127 -12.140 -9.849 -13.825 -11.885 3.951 -12.202 -3.515 -10.077 -12.447 -12.099 -1.701 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 81 - U - + - ML 267 266 6 269 3 1 1 14 32 -16.128 -0.000 -14.782 -3.127 -3.507 -9.742 1.925 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - U - + - ML 270 269 3 272 3 1 1 13 31 -16.128 -0.000 -14.782 -9.274 -4.912 -5.060 1.976 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - C - + - ML 273 272 3 275 3 1 1 11 30 -16.128 -0.000 -14.782 -2.358 1.847 -10.362 -2.280 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - G - + - ML 276 275 3 278 3 1 1 10 29 -16.128 -0.000 -14.782 0.929 -10.841 1.048 -5.139 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.128 -0.000 -14.782 1.964 -11.345 -3.909 -5.014 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - U - + - ML 282 281 3 284 3 1 1 6 11 -6.018 -0.048 -5.839 -1.795 -1.072 -1.812 1.562 D 283 281 3 284 3 0 0 5 10 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 6 12 -4.936 -0.055 -7.636 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.034 -4.211 -3.859 1.932 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ser-TGA-2nd-align LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:59 2015 COM [1] cmbuild --hand --enone Ser-TGA-final-vert.cm ../Ser-TGA-2nd-align.sto NSEQ 1086 EFFN 6.450279 CKSUM 3239661816 STATS LOCAL MSV -8.9817 0.71866 STATS LOCAL VITERBI -9.5818 0.71866 STATS LOCAL FORWARD -3.7207 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41419 1.59019 1.30544 1.26607 1.38629 1.38629 1.38629 1.38629 0.02978 4.48290 4.01508 1.46634 0.26236 0.00000 * 1 0.99827 2.39477 0.83829 2.22712 1 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02302 4.47614 4.47614 1.46634 0.26236 1.25473 0.33569 2 0.14207 4.38035 2.27761 4.05209 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02301 4.47643 4.47643 1.46634 0.26236 0.82115 0.57969 3 2.78770 3.82624 0.10932 3.90178 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 4 0.37680 3.40719 1.48218 2.92490 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03476 3.77846 4.48290 0.80312 0.59408 1.09861 0.40547 5 0.54902 2.68773 1.33342 2.39826 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 6 0.54449 2.81245 1.21768 2.75062 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 7 1.74193 2.60896 0.41588 2.39199 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.20219 4.48290 1.76167 1.46634 0.26236 1.09861 0.40547 8 1.10976 2.15210 2.12946 0.83190 9 u + - , 1.38629 1.38629 1.38629 1.38629 0.02729 4.30801 4.30801 1.46634 0.26236 2.44684 0.09054 9 0.88586 2.73387 0.85151 2.34443 10 g + - , 1.38629 1.38629 1.38629 1.38629 0.03564 4.31457 3.83322 1.46634 0.26236 0.12748 2.12287 10 1.40718 1.89285 0.94760 1.52852 11 g = - < 1.38629 1.38629 1.38629 1.38629 0.02302 4.47589 4.47589 1.46634 0.26236 1.28599 0.32348 11 3.75002 0.21092 3.57580 1.97578 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02717 4.47589 4.17207 1.46634 0.26236 0.80464 0.59285 12 0.03142 5.16204 4.03773 4.88441 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.02295 4.47888 4.47888 1.46634 0.26236 1.21046 0.35391 13 1.90411 1.64582 1.27687 0.96948 14 u = - < 1.38629 1.38629 1.38629 1.38629 0.02295 4.47888 4.47888 1.46634 0.26236 0.90663 0.51731 14 0.40162 2.74023 2.11371 1.92814 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02534 4.48290 4.28858 1.46634 0.26236 1.09861 0.40547 15 1.02136 2.61209 0.84765 1.97983 16 g + - _ 1.38629 1.38629 1.38629 1.38629 0.05362 4.48048 3.19721 1.46634 0.26236 1.16767 0.37265 16 1.38596 1.94861 1.78896 0.82027 17 u + - _ 1.38629 1.38629 1.38629 1.38629 1.02724 4.45048 0.46151 1.46634 0.26236 1.76180 0.18842 17 1.46294 1.73703 1.90054 0.81438 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.20446 1.86882 3.48642 0.82619 0.57574 0.09552 2.39576 18 2.37441 3.25237 0.18998 3.18762 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02756 4.44421 4.17079 1.46634 0.26236 1.45668 0.26528 19 2.53656 3.81649 0.14888 3.29182 23 G + - _ 1.38629 1.38629 1.38629 1.38629 0.08163 4.44617 2.70805 1.46634 0.26236 1.82321 0.17615 20 2.24764 1.99882 2.86942 0.35364 24 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13788 2.15081 4.38966 0.81524 0.58436 0.20316 1.69363 21 1.89733 2.18364 2.06662 0.49301 29 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 22 0.85546 1.98927 1.38435 1.67327 30 a = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 23 4.95405 4.29142 4.86695 0.02885 31 U = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 24 2.28221 3.69980 0.17203 3.46535 32 G = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 25 1.75636 1.14907 1.50964 1.23992 33 c = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 26 1.65545 2.71438 0.47750 2.10034 34 G + - , 1.38629 1.38629 1.38629 1.38629 0.02325 4.48290 4.44949 1.46634 0.26236 1.09861 0.40547 27 1.52649 2.08371 0.67913 1.88932 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.10988 0.39988 28 2.20232 1.14819 2.04710 0.81388 36 u = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.10988 0.39988 29 3.24786 2.01137 2.98251 0.25274 37 U = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.10988 0.39988 30 1.67230 2.76523 0.39726 2.56308 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.07646 0.41673 31 1.51615 2.67833 0.45950 2.52362 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 32 3.33798 0.20634 3.95751 2.02629 40 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 33 3.84144 3.62483 4.38802 0.06245 41 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 34 3.84144 3.62483 4.38802 0.06245 42 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 35 3.89152 4.89649 0.04094 4.40404 43 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 36 0.04115 4.50924 4.14005 4.31364 44 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 37 0.04115 4.50924 4.14005 4.31364 45 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 38 0.07946 3.76977 3.59678 3.65303 46 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 39 2.81563 0.52928 2.50461 1.31158 47 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 40 2.81820 0.52784 2.57233 1.29444 48 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 41 0.31426 3.19995 1.74515 2.91347 49 A = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 42 1.19093 2.21865 0.83130 1.88505 50 g = - > 1.38629 1.38629 1.38629 1.38629 0.03331 3.84155 4.48290 0.84766 0.55934 1.09861 0.40547 43 2.06457 0.98936 1.89746 1.04594 52 c = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 44 1.09144 1.92927 1.95589 0.97399 53 u + - , 1.38629 1.38629 1.38629 1.38629 0.06640 4.48290 2.93858 1.46634 0.26236 1.09861 0.40547 45 1.55482 1.92987 1.57460 0.82893 54 u + - , 1.38629 1.38629 1.38629 1.38629 1.44464 4.44037 0.28452 1.46634 0.26236 1.89984 0.16204 46 1.80805 1.30439 1.07542 1.49819 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 47 1.80301 1.30593 1.07728 1.49718 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 48 1.80066 1.30665 1.07816 1.49671 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 49 1.79961 1.30698 1.07856 1.49650 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 50 1.79920 1.30710 1.07871 1.49642 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 51 1.79910 1.30713 1.07875 1.49640 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 52 1.79915 1.30712 1.07873 1.49641 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.03298 0.04937 53 1.42543 1.68519 1.84560 0.87646 62 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08571 3.19243 3.19243 1.46634 0.26236 4.20684 0.01501 54 1.42543 1.68519 1.84560 0.87646 63 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08571 3.19243 3.19243 1.46634 0.26236 4.20684 0.01501 55 1.42543 1.68519 1.84560 0.87646 64 u + - _ 1.38629 1.38629 1.38629 1.38629 0.19670 3.19243 1.98420 1.46634 0.26236 4.20684 0.01501 56 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 57 1.73041 1.22014 1.16205 1.53826 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 58 1.73032 1.22018 1.16208 1.53823 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 59 1.73031 1.22018 1.16209 1.53823 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 60 1.73045 1.22012 1.16203 1.53827 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 61 1.73086 1.21995 1.16188 1.53839 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 62 1.73176 1.21956 1.16156 1.53866 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 63 1.73350 1.21882 1.16092 1.53917 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02920 3.54805 64 0.67891 2.20583 1.83449 1.50068 73 A + - , 1.38629 1.38629 1.38629 1.38629 0.05759 3.10861 4.48290 0.44662 1.02106 1.09861 0.40547 65 1.27874 1.80918 2.30453 0.78085 75 u + - , 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 66 3.25117 4.41296 0.06590 4.34840 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 67 1.64864 2.62032 0.44263 2.37988 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 68 1.74216 1.88766 0.66339 1.84309 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 69 2.48409 3.96809 0.13211 3.84212 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 70 2.18794 3.02726 0.25733 2.71371 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 71 2.74063 2.74158 3.49863 0.17344 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 72 3.11993 2.94910 3.48747 0.13596 82 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 73 2.65427 0.22425 3.66741 2.25388 83 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 74 0.80861 3.17088 0.80038 2.75831 84 g + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 75 0.08566 3.89912 3.34362 3.62961 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 76 1.95212 1.90772 2.31829 0.49238 86 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04848 3.77641 3.71224 0.80171 0.59523 1.09861 0.40547 77 2.78878 2.76525 3.19245 0.18096 88 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02317 4.46970 4.46970 1.46634 0.26236 0.65514 0.73266 78 3.12049 0.29899 2.83418 1.86089 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 79 4.02700 0.15898 3.80453 2.23599 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 80 2.05201 1.26274 1.69932 0.90180 91 u = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 81 2.64061 0.96403 2.42974 0.77812 92 u = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 82 4.46840 0.08422 4.27216 2.89403 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 83 2.63297 0.49193 2.41295 1.48218 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 84 3.04396 1.50376 2.61296 0.42046 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 85 2.72241 1.59220 2.39654 0.44664 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 86 3.30601 1.85556 3.19887 0.26636 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 87 4.05941 0.12317 3.82441 2.56656 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 88 4.18985 3.03694 4.13882 0.08237 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 89 2.43666 0.93367 2.14997 0.90894 100 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02316 4.48290 4.45767 1.46634 0.26236 1.09861 0.40547 90 2.05610 3.53266 0.22883 3.05001 101 G + - : 1.38629 1.38629 1.38629 1.38629 0.01150 4.47125 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Gly.cm0000644000543100007160000017250312573631651021143 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Gly-2nd-align STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone Gly-final-vert.cm ../Gly-2nd-align.sto COM [2] cmcalibrate --seed 208 Gly-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 2291642441 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.9513 0.71858 ECMLC 0.57882 -7.62858 2.58801 1600000 444042 0.002702 ECMGC 0.28158 -45.83651 -29.27343 1600000 42414 0.009431 ECMLI 0.60000 -6.77038 2.97835 1600000 416378 0.002882 ECMGI 0.29089 -42.10203 -26.18494 1600000 41008 0.009754 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 118 -15.013 -16.259 -0.000 -12.712 IL 1 1 2 1 4 20 41 101 120 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 42 101 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - A - + MR 3 2 3 5 5 27 49 99 118 -15.062 -0.000 -14.877 -15.089 -15.981 2.000 -12.067 -11.313 -11.400 D 4 2 3 5 5 17 37 98 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 20 41 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 A U = = MP 6 5 3 10 6 27 48 98 117 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -3.663 -2.183 -12.233 3.575 -14.374 -15.528 -9.832 -12.276 -11.793 1.676 -12.463 -0.786 -9.757 -13.538 -11.663 -10.832 ML 7 5 3 10 6 19 39 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 39 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 16 35 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 40 98 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 40 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 U A = = MP 12 11 6 16 6 27 47 96 115 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.035 -13.310 -12.358 -9.539 -2.012 -12.506 2.367 -11.626 -12.460 0.051 -12.583 -11.697 3.238 -12.873 -3.089 -11.261 ML 13 11 6 16 6 18 38 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 38 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 34 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 40 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 40 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 c g = = MP 18 17 6 22 6 26 45 94 113 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.026 -13.296 -12.353 -9.520 -1.431 -12.503 2.891 -11.622 -12.454 0.180 -12.578 -11.671 2.793 -12.866 -2.759 -11.255 ML 19 17 6 22 6 18 38 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 38 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 19 39 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 40 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 U A = = MP 24 23 6 28 6 24 43 92 111 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -5.177 -10.345 -10.585 -2.880 -3.231 -11.367 2.251 -10.084 -10.458 -3.008 -10.945 -7.930 3.248 0.042 -1.848 -5.295 ML 25 23 6 28 6 18 38 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 18 37 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 34 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 39 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 39 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 U A = = MP 30 29 6 34 6 22 41 90 109 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.042 -13.320 -12.362 -3.297 -0.706 -12.508 1.026 -5.073 -12.465 -9.523 -12.586 -11.716 3.546 -12.877 0.507 -3.135 ML 31 29 6 34 6 18 37 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 18 37 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 15 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 38 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 38 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 U A = = MP 36 35 6 40 6 20 39 88 107 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.044 -13.323 -12.363 -3.445 -0.823 -12.508 1.555 -4.127 -12.466 -9.527 -12.587 -11.721 3.600 -12.879 -2.380 -5.259 ML 37 35 6 40 6 17 36 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 17 36 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 15 33 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 37 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 37 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 C G = = MP 42 41 6 46 4 18 37 86 105 -15.219 -15.426 -0.000 -13.840 -13.048 -13.330 -12.365 -9.567 -5.115 -12.510 3.170 -11.631 -12.469 -9.538 -3.656 -11.734 2.765 -12.882 -3.472 -11.271 ML 43 41 6 46 4 16 35 87 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 16 34 86 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 15 33 85 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 36 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 36 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 16 35 84 103 -3.773 -0.110 -14.782 -5.960 -5.906 -5.252 1.979 D 49 47 6 50 3 14 33 83 102 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 35 84 103 -7.078 -0.012 -9.778 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 15 34 83 102 -16.784 -0.000 2.000 -12.067 -11.313 -11.400 D 52 50 3 53 2 14 33 82 101 -8.445 -0.004 IL 53 53 3 53 2 15 34 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 14 33 82 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 43 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 43 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 25 43 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 11 30 G C = = MP 58 57 1 62 6 2 3 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.149 -10.590 -13.923 -1.447 -15.141 -12.123 -9.849 -13.864 -11.887 3.616 -12.198 1.751 -10.082 -12.437 -12.106 -12.584 ML 59 57 1 62 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 29 U A = = MP 64 63 6 68 6 2 3 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.046 -13.319 -12.365 -9.556 -10.718 -12.511 -2.767 -11.632 -12.468 0.051 -12.589 -11.708 3.886 -12.883 -4.888 -11.270 ML 65 63 6 68 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 28 A U = = MP 70 69 6 74 6 2 3 21 39 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.046 -3.553 -12.235 3.894 -14.203 -15.422 -9.690 -12.267 -11.799 -7.372 -12.465 -7.999 0.051 -13.530 -11.536 -10.836 ML 71 69 6 74 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 27 U G = = MP 76 75 6 80 4 2 3 19 37 -15.219 -15.426 -0.000 -13.840 -2.958 -13.325 -3.949 -4.052 -1.885 -12.509 0.682 -11.630 -12.467 -9.531 -12.588 -11.725 1.244 -12.880 3.329 0.537 ML 77 75 6 80 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 17 34 -16.128 -0.000 -14.782 1.108 -1.307 -4.691 0.487 D 83 81 6 84 3 0 0 19 38 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 16 33 -16.128 -0.227 -2.778 1.667 -1.978 -2.059 -1.593 D 86 84 3 87 3 0 0 18 37 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - + - ML 88 87 3 90 3 1 1 15 32 -15.901 -0.824 -1.201 1.119 -0.425 -4.258 0.044 D 89 87 3 90 3 0 0 13 31 -14.772 -10.285 -0.001 IL 90 90 3 90 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - a - + - ML 91 90 3 93 3 1 1 14 31 -2.480 -3.887 -0.409 0.837 -0.315 -8.254 0.493 D 92 90 3 93 3 0 0 13 30 -16.598 -0.383 -2.102 IL 93 93 3 93 3 1 1 14 31 -7.314 -0.010 -10.015 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 13 30 -15.174 -0.010 -7.200 1.457 -0.851 -0.622 -4.320 D 95 93 3 96 3 0 0 11 28 -16.501 -2.544 -0.271 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - g - + - ML 97 96 3 99 3 1 1 12 28 -15.381 -0.230 -2.763 -0.755 -0.063 0.717 -0.311 D 98 96 3 99 3 0 0 10 27 -16.242 -11.755 -0.000 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 11 22 -1.097 -0.909 -13.805 -2.521 -0.457 -4.826 1.614 D 101 99 3 102 3 0 0 9 20 -3.955 -0.097 -10.917 IL 102 102 3 102 3 1 1 11 22 -2.471 -0.287 -11.920 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.957 -4.463 -5.713 -4.246 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - A - + - ML 109 108 2 111 5 1 1 26 45 -15.062 -0.000 -14.877 -15.089 -15.981 1.598 -2.571 -0.772 -2.187 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 32 48 a u = = MP 112 111 3 116 6 2 2 25 44 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -0.440 1.233 -4.944 2.926 -3.988 -2.796 -2.143 -2.424 -5.200 1.268 -8.102 -1.608 0.231 -1.517 -3.935 -1.718 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 47 g c = = MP 118 117 6 122 6 2 2 23 42 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -8.564 -3.704 -8.655 1.182 -4.688 -5.872 0.977 -1.174 -8.816 2.427 -9.301 1.163 1.272 -0.387 -2.794 -2.079 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 46 U A = = MP 124 123 6 128 6 2 2 21 40 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -5.118 -13.258 -12.341 0.151 -1.313 -2.964 -3.536 -11.612 -12.439 -3.712 -12.568 -11.600 3.693 -4.255 -4.834 0.192 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 45 G C = = MP 130 129 6 134 6 2 2 19 38 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.575 -10.567 -14.898 -1.215 -15.383 -11.860 -9.853 -14.706 -11.908 3.843 -12.146 0.277 -10.165 -12.276 -12.225 -13.650 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 44 A U = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -12.040 -4.255 -12.229 3.715 -14.240 -15.420 0.582 -6.638 -11.795 0.184 -12.461 -4.411 -3.054 -13.518 -11.558 -10.831 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.128 -0.000 -14.782 -10.102 1.814 -5.538 -1.112 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -12.452 -3.756 -13.523 1.973 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -12.103 -1.947 -13.081 1.903 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.909 -2.038 -11.397 -11.038 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 48 67 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 6 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - u - + - ML 166 165 2 168 3 1 5 48 67 -16.128 -0.000 -14.782 0.553 -0.010 -3.946 0.561 D 167 165 2 168 3 0 3 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - + - ML 169 168 3 171 2 1 4 47 66 -16.784 -0.000 1.409 -1.885 0.052 -4.750 D 170 168 3 171 2 0 3 46 65 -8.445 -0.004 IL 171 171 3 171 2 1 4 48 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.432 -15.113 -13.129 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.545 -13.058 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.545 -13.058 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.545 -13.058 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 31 48 -16.128 -0.000 -14.782 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - G - + - ML 231 230 2 233 3 1 4 31 48 -6.296 -0.019 -14.782 0.247 -10.673 1.479 -5.346 D 232 230 2 233 3 0 0 29 46 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 31 48 -4.685 -0.066 -7.385 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - U - + - ML 234 233 3 236 5 1 3 30 47 -15.062 -0.000 -14.877 -15.089 -15.981 -0.706 -0.609 -3.850 1.412 D 235 233 3 236 5 0 0 29 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 31 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 93 C G = = MP 237 236 3 241 6 2 4 29 46 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.044 -13.323 -12.363 -9.557 -10.714 -12.508 3.168 -11.629 -12.466 0.051 -12.587 -11.721 2.559 -12.879 -3.630 -11.268 ML 238 236 3 241 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 28 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 29 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 92 U A = = MP 243 242 6 247 6 2 4 27 44 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.038 -13.314 -12.360 0.051 -3.020 -12.507 2.430 -11.627 -12.462 -9.514 -12.584 -11.705 3.164 -12.875 -1.038 -11.264 ML 244 242 6 247 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 24 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 27 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 91 U A = = MP 249 248 6 253 6 2 2 25 42 -15.996 -6.303 -0.052 -14.712 -8.903 -5.624 -11.173 -10.946 -11.051 -3.051 -4.325 -4.950 1.625 -4.828 -10.959 0.059 -11.390 -8.579 3.514 -11.300 -2.291 -9.693 ML 250 248 6 253 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 24 41 -5.720 -0.043 -9.231 -7.399 -8.505 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 89 G C = = MP 255 254 6 259 6 2 2 23 40 -15.963 -15.903 -0.038 -14.679 -7.724 -5.556 -13.283 -3.606 -14.231 1.434 -15.207 -11.972 -9.818 -14.134 -11.863 3.718 -12.143 -4.246 -10.084 -12.333 -12.123 -12.917 ML 256 254 6 259 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 21 39 -8.920 -7.649 -3.558 -7.628 -2.761 -0.404 -2.029 1.693 -2.860 -1.385 D 258 254 6 259 6 0 0 19 37 -14.429 -13.127 -8.924 -9.606 -9.623 -0.007 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 88 G C = = MP 261 260 6 265 4 2 2 21 38 -15.148 -15.355 -0.240 -2.705 -13.545 -1.960 -14.942 0.029 -15.324 -11.766 -2.764 -14.737 -11.838 3.857 -12.069 -3.685 -10.093 -12.188 -12.155 -13.718 ML 262 260 6 265 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 21 40 -7.853 -6.882 -4.749 -0.074 1.583 -1.043 -2.178 -1.750 D 264 260 6 265 4 0 0 19 37 -10.922 -10.603 -4.446 -0.069 IL 265 265 5 265 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 267 266 6 269 3 1 1 19 36 -5.004 -0.063 -6.444 -1.868 -1.576 -3.889 1.733 D 268 266 6 269 3 0 0 18 35 -15.168 -0.335 -2.269 IL 269 269 3 269 3 1 1 19 36 -5.592 -0.035 -8.292 0.000 0.000 0.000 0.000 [ MATL 69 ] 79 - U - + - ML 270 269 3 272 3 1 1 18 35 -16.056 -0.000 -14.710 -0.862 -1.793 -0.751 1.360 D 271 269 3 272 3 0 0 17 34 -13.203 -0.272 -2.542 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 80 - A - + - ML 273 272 3 275 3 1 1 17 34 -16.117 -0.007 -7.617 1.193 0.005 -3.192 -0.735 D 274 272 3 275 3 0 0 14 32 -10.682 -6.195 -0.021 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 81 - A - + - ML 276 275 3 278 3 1 1 16 33 -4.627 -0.069 -7.354 1.590 -1.322 -2.292 -1.375 D 277 275 3 278 3 0 0 11 28 -11.347 -0.246 -2.677 IL 278 278 3 278 3 1 1 18 35 -1.602 -0.580 -9.485 0.000 0.000 0.000 0.000 [ MATL 72 ] 84 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.117 -0.038 -5.281 1.859 -2.576 -3.883 -2.866 D 280 278 3 281 3 0 0 11 30 -10.625 -1.280 -0.767 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 85 - a - + - ML 282 281 3 284 3 1 1 6 10 -5.281 -0.171 -3.543 0.990 0.212 -0.880 -1.682 D 283 281 3 284 3 0 0 3 8 -12.510 -0.852 -1.165 IL 284 284 3 284 3 1 1 6 10 -5.579 -0.035 -8.280 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -3.456 1.171 -5.716 0.712 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Gly-2nd-align LENG 90 MAXL 164 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone Gly-final-vert.cm ../Gly-2nd-align.sto NSEQ 1086 EFFN 13.004128 CKSUM 2291642441 STATS LOCAL MSV -8.7259 0.71858 STATS LOCAL VITERBI -9.5231 0.71858 STATS LOCAL FORWARD -3.8707 0.71858 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15748 1.51943 1.65581 1.28754 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 0.00000 * 1 0.40915 3.96991 1.22720 3.73820 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 2 3.10872 1.06489 2.28114 0.67647 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 3 3.00923 0.82264 2.20137 0.91442 3 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 4 2.61755 1.15651 2.42022 0.64716 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 5 3.04147 1.48383 2.89194 0.40048 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 6 3.32259 1.33947 3.20475 0.41342 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 7 3.75148 0.63165 3.39901 0.88820 7 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 8 3.50198 3.40503 3.85775 0.08824 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.07900 2.67316 4.97272 0.18979 1.75525 1.09861 0.40547 9 0.01751 5.38003 4.97620 5.14188 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 10 3.02594 4.52007 0.07481 4.36795 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 11 4.26983 2.70468 2.63762 0.16535 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 12 0.13516 4.52965 3.05871 2.67811 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 13 2.48262 1.62903 2.47102 0.45278 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 14 0.75033 2.01998 2.69894 1.11518 15 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 15 0.32688 2.45670 2.53053 2.17602 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.14801 4.97272 2.03522 1.46634 0.26236 1.09861 0.40547 16 0.76318 1.66010 2.59149 1.31382 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.47154 4.84064 0.99952 1.46634 0.26236 3.03824 0.04911 17 0.98411 1.57876 2.41549 1.10662 18 a + - _ 1.38629 1.38629 1.38629 1.38629 1.22454 1.94282 0.57482 0.16426 1.88732 0.29061 1.37756 18 0.54440 1.95493 1.80371 2.17550 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02893 4.44370 4.08880 1.46634 0.26236 1.71972 0.19737 19 1.51648 1.54502 1.14122 1.39522 21 g + - _ 1.38629 1.38629 1.38629 1.38629 0.13827 4.55206 2.13205 1.46634 0.26236 2.48470 0.08703 20 2.29339 1.72383 2.96834 0.40151 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.43649 1.07199 4.47694 0.27027 1.44044 0.03422 3.39205 21 0.07270 3.74877 3.89569 3.64046 26 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 22 1.57891 2.64398 0.54873 1.93075 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 23 2.70948 3.33383 4.30669 0.12297 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 24 0.18172 2.67690 2.53878 3.99419 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 25 4.49932 0.26209 4.32159 1.57911 30 C = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 26 0.37120 2.64637 1.94159 2.34640 31 A + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 27 0.89213 1.85595 1.57227 1.48571 32 a = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 28 1.66031 1.63231 1.02829 1.35937 33 g = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 29 2.02127 1.82449 2.20623 0.51735 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 30 3.12816 4.71829 0.06471 4.61184 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 31 0.33871 2.25917 1.93385 3.26278 36 A = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 32 3.69816 0.17416 4.07468 2.13645 37 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 33 4.06203 3.35308 4.57774 0.06451 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 34 3.82891 2.60701 4.33864 0.11490 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 35 5.01395 0.02405 5.36011 4.38881 40 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 36 5.01395 0.02405 5.36011 4.38881 41 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 37 0.01751 5.38003 4.97620 5.14188 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 38 0.09883 2.89500 4.02584 3.86514 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 39 3.44732 2.06560 2.20825 0.31261 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 40 4.75540 0.13061 4.57636 2.26781 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 41 0.61560 2.31691 1.74236 1.68202 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 42 1.63555 1.20773 1.53212 1.23718 47 c = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 43 1.64053 1.38177 1.70282 0.98666 48 u = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 44 1.08325 1.43202 2.60682 1.05294 49 u + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 45 0.47451 2.48967 1.44056 2.84591 50 A + - , 1.38629 1.38629 1.38629 1.38629 1.97698 4.97272 0.15713 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 47 1.80283 1.30599 1.07735 1.49715 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 48 1.80036 1.30674 1.07827 1.49665 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 49 1.79924 1.30709 1.07869 1.49643 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 50 1.79878 1.30723 1.07887 1.49633 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 51 1.79864 1.30727 1.07892 1.49630 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 52 1.79866 1.30727 1.07891 1.49631 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 57 1.72994 1.22034 1.16222 1.53812 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 58 1.72989 1.22036 1.16224 1.53810 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 59 1.72992 1.22035 1.16223 1.53811 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 60 1.73012 1.22027 1.16216 1.53817 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 61 1.73060 1.22006 1.16198 1.53831 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 62 1.73160 1.21963 1.16161 1.53861 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01608 4.13851 64 1.25190 3.88964 0.41241 3.45665 69 G + - , 1.38629 1.38629 1.38629 1.38629 0.02495 4.03300 4.97272 0.65557 0.73219 1.09861 0.40547 65 1.75744 1.75258 2.87596 0.51446 71 U + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 66 3.34785 0.67281 2.37314 1.01783 72 C = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 67 2.41049 1.05527 2.77949 0.69303 73 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 68 2.81314 1.36167 2.18115 0.56065 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.03344 4.97272 3.65092 1.46634 0.26236 1.09861 0.40547 69 1.86698 4.14164 0.20936 3.99476 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.03684 4.95349 3.53648 1.46634 0.26236 1.74923 0.19105 70 2.38945 3.74739 0.14589 3.88807 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.15497 4.93119 1.99261 1.46634 0.26236 1.97389 0.14956 71 2.39290 2.28956 3.20384 0.26564 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05282 3.38741 4.03697 0.43351 1.04478 0.29913 1.35271 72 1.68120 2.16756 1.87969 0.60376 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01455 4.93033 4.93033 1.46634 0.26236 0.40684 1.09588 73 0.69179 1.47472 2.58365 1.63486 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01840 4.96573 4.48620 1.46634 0.26236 1.38777 0.28719 74 0.39362 2.16486 2.54809 2.02196 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05492 3.18730 4.41027 0.58765 0.81110 0.65861 0.72892 75 0.16781 2.83466 3.26916 2.85229 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03638 4.96601 3.54895 1.46634 0.26236 1.03966 0.43630 76 0.82293 1.38672 1.89232 1.83105 85 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11474 3.54651 2.53108 0.43629 1.03967 0.78375 0.61007 77 2.64049 0.66904 3.44709 0.95546 87 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03890 4.88724 3.48626 1.46634 0.26236 0.33760 1.24996 78 4.00864 0.15695 3.59208 2.30708 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.01448 4.93526 4.93526 1.46634 0.26236 0.77906 0.61403 79 4.17681 0.22597 3.95606 1.78514 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.01558 4.95528 0.65558 0.73218 0.45236 1.01095 80 0.61748 2.28337 1.26542 2.56867 91 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 81 0.77267 2.96028 0.95841 2.27387 92 a = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 82 1.08497 2.45736 0.63275 3.09454 93 G = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 83 0.93503 3.69397 0.59301 3.51017 94 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 84 0.41637 3.37982 1.35495 3.02509 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 85 0.49612 3.07045 1.27549 2.72694 96 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 86 0.79159 2.19388 1.06291 2.40856 97 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 87 0.95223 2.30408 0.79548 2.76611 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 88 0.71028 2.38128 1.02409 2.86579 99 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 89 3.79586 1.36498 3.76872 0.35800 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 90 0.01751 5.38003 4.97620 5.14188 101 A + - : 1.38629 1.38629 1.38629 1.38629 0.00700 4.96577 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-LeuTAG.cm0000644000543100007160000017250212573631164021753 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Leu-TAG STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:19 2015 COM [1] cmbuild --hand --enone Leu-TAG_model.cm aligntRNAdb-Leu-TAG.sto COM [2] cmcalibrate --seed 208 Leu-TAG_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3220087553 NULL 0.000 0.000 0.000 0.000 EFP7GF -6.8650 0.71874 ECMLC 0.54132 -9.57742 1.84487 1600000 581403 0.002064 ECMGC 0.31421 -55.09887 -38.66306 1600000 69971 0.005717 ECMLI 0.52098 -9.87138 1.94097 1600000 564724 0.002125 ECMGI 0.30712 -51.22417 -34.67859 1600000 64401 0.006211 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 118 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 38 101 120 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 40 101 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 21 47 99 118 -13.126 -0.001 -12.941 -13.153 -14.045 1.937 -8.690 -2.913 -4.788 D 4 2 3 5 5 12 35 98 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 38 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 A U = = MP 6 5 3 10 6 21 47 98 117 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.924 -12.434 -13.590 -7.893 -10.336 -9.854 -1.261 -10.524 -1.378 -7.817 -11.599 -9.723 -8.892 ML 7 5 3 10 6 13 37 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 37 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 34 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 38 98 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 38 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 C G = = MP 12 11 6 16 6 21 45 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 13 11 6 16 6 13 37 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 37 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 34 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 37 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 38 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 U A = = MP 18 17 6 22 6 19 44 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.349 -12.049 -12.181 -11.103 -10.388 -12.065 -9.099 -11.819 -10.390 -11.094 -12.380 -11.838 3.995 -10.493 -5.211 -5.545 ML 19 17 6 22 6 13 36 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 36 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 37 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 37 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 U A = = MP 24 23 6 28 6 17 42 92 111 -5.855 -14.017 -0.026 -12.794 -13.073 -13.468 -11.108 -11.366 -10.431 -7.608 -8.787 -10.580 -4.501 -9.700 -10.527 -7.587 -10.655 -9.735 3.960 -10.943 -1.426 -9.247 ML 25 23 6 28 6 12 36 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 36 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 39 91 110 -5.235 -5.497 -0.097 -7.153 -7.929 -7.589 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 37 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 91 U A = = MP 30 29 6 34 6 15 40 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 31 29 6 34 6 12 36 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 36 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 36 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 37 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 90 U A = = MP 36 35 6 40 6 13 38 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.962 -11.389 -10.427 -7.626 -8.778 -10.571 -1.481 -9.693 -1.831 -7.598 -10.650 -9.790 3.879 -10.943 -1.005 -9.332 ML 37 35 6 40 6 11 36 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 35 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 33 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 36 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 36 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 89 A U = = MP 42 41 6 46 4 11 36 86 105 -13.280 -13.487 -0.015 -6.635 -11.035 -10.928 -5.977 3.992 -11.491 -11.533 -10.188 -5.799 -11.285 -7.467 -11.327 -6.291 -10.337 -11.545 -10.678 -5.147 ML 43 41 6 46 4 10 35 87 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 34 87 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 33 85 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 35 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 35 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 9 34 84 103 -14.176 -0.000 -12.830 1.430 -3.065 -2.109 -0.069 D 49 47 6 50 3 8 33 83 102 -9.133 -0.134 -3.525 IL 50 50 3 50 3 10 34 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 8 33 83 102 -14.843 -0.000 1.987 -10.056 -4.849 -9.464 D 52 50 3 53 2 7 32 82 101 -8.445 -0.004 IL 53 53 3 53 2 9 33 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 7 32 82 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 15 44 62 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 15 44 62 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 26 43 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 29 G C = = MP 58 57 1 62 6 2 5 26 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.944 -3.322 -13.996 -2.322 -13.611 -9.822 -7.937 -13.563 -10.002 3.971 -10.202 -6.558 -8.293 -10.281 -10.374 -12.961 ML 59 57 1 62 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 G C = = MP 64 63 6 68 6 2 5 24 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.013 -8.636 -14.346 -6.113 -13.638 -9.798 -7.936 -13.797 -2.648 3.982 -10.197 -6.569 -8.302 -10.266 -10.386 -13.442 ML 65 63 6 68 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 A U = = MP 70 69 6 74 6 2 5 22 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.606 -10.294 3.944 -12.433 -13.589 -7.891 -10.336 -9.854 -1.275 -10.524 -6.045 -7.817 -11.599 -9.722 -8.892 ML 71 69 6 74 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 U A = = MP 76 75 6 80 4 2 4 20 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -0.750 -9.693 -10.530 -7.599 -10.650 -9.793 3.904 -10.943 -3.794 -1.543 ML 77 75 6 80 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 3 17 35 -14.190 -0.000 -12.844 1.794 -8.245 -1.079 -4.150 D 83 81 6 84 3 0 0 19 38 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - + - ML 85 84 3 87 3 1 2 16 34 -14.190 -0.000 -12.844 0.204 -5.100 1.493 -8.013 D 86 84 3 87 3 0 0 18 37 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - a - + - ML 88 87 3 90 3 1 1 15 32 -14.190 -3.818 -0.106 0.727 -0.373 -1.707 0.340 D 89 87 3 90 3 0 0 18 36 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 15 32 -1.626 -0.569 -9.030 0.013 -2.158 -0.006 0.824 D 92 90 3 93 3 0 0 14 30 -15.505 -0.002 -9.897 IL 93 93 3 93 3 1 1 15 32 -3.762 -0.128 -6.462 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 14 30 -14.190 -0.000 -12.844 1.978 -9.983 -4.090 -9.427 D 95 93 3 96 3 0 0 16 34 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - G - + - ML 97 96 3 99 3 1 1 13 28 -14.190 -0.048 -4.934 -8.727 -10.497 1.998 -9.485 D 98 96 3 99 3 0 0 15 33 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 12 25 -4.701 -0.057 -12.796 -2.011 -0.241 -7.619 1.536 D 101 99 3 102 3 0 0 12 26 -0.956 -1.133 -5.124 IL 102 102 3 102 3 1 1 13 26 -2.035 -0.412 -7.887 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - a - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.890 -0.982 -4.484 0.675 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.382 -4.075 0.414 -8.616 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = MP 112 111 3 116 6 2 2 26 45 -5.923 -14.017 -0.025 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.200 -10.571 -2.834 -9.692 -10.530 -7.600 -10.650 -9.795 3.942 -10.943 -1.965 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -5.177 -5.440 -0.101 -7.095 -7.872 -7.532 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 47 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.888 -10.571 -2.110 -9.692 -10.530 -7.600 -10.650 -9.795 3.940 -10.943 -2.919 -9.332 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 46 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.925 -8.639 -13.912 -2.012 -13.600 -9.829 -7.936 -13.504 -10.001 3.975 -10.204 -6.555 -8.290 -10.285 -10.369 -12.852 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 45 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.689 -8.647 -13.074 -1.429 -13.481 -9.925 -7.934 -12.865 -9.991 3.877 -10.224 -0.123 -8.251 -10.347 -10.314 -11.840 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 44 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.390 -10.426 -7.626 -2.710 -10.571 0.882 -9.692 -10.530 -7.598 -10.650 -9.794 3.624 -1.047 0.229 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.251 1.947 -9.652 -2.809 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.899 -2.674 -4.482 -3.847 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 1 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - ML 166 165 2 168 3 1 1 49 68 -14.190 -1.791 -0.492 1.999 -10.184 -9.419 -9.524 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - + - ML 169 168 3 171 2 1 1 48 67 -13.046 -0.000 1.996 -8.503 -7.756 -7.881 D 170 168 3 171 2 0 0 47 66 -13.384 -0.000 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 28 47 -14.190 -0.040 -5.203 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - A - + - ML 231 230 2 233 3 1 1 28 47 -5.271 -0.038 -12.805 1.927 -9.530 -2.373 -9.175 D 232 230 2 233 3 0 0 27 46 -10.474 -0.051 -4.866 IL 233 233 3 233 3 1 1 28 47 -3.866 -0.119 -6.567 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - A - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.551 -0.947 -3.826 -1.057 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 88 A A = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 3.423 -11.229 -1.185 -7.475 1.069 -10.600 -4.520 -9.704 -3.512 -7.488 -10.647 -9.434 1.364 -10.955 -6.510 -9.320 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 87 U A = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 0.096 -9.692 -10.530 -7.599 -10.650 -9.795 3.880 -10.943 -2.417 -9.332 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 86 U A = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -2.087 -9.693 -10.530 -7.599 -10.650 -9.793 3.950 -10.943 -1.778 -9.332 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 85 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 84 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 267 266 6 269 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - G - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - C - + - ML 273 272 3 275 3 1 1 13 32 -14.190 -0.000 -12.844 -4.809 1.985 -8.998 -8.103 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 12 30 -14.190 -0.000 -12.844 1.966 -5.247 -3.969 -8.630 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 15 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - C - + - ML 282 281 3 284 3 1 1 9 27 -14.190 -0.000 -12.844 -2.862 1.870 -5.325 -2.448 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 83 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -11.317 -10.026 -12.774 1.999 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Leu-TAG LENG 90 MAXL 181 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:19 2015 COM [1] cmbuild --hand --enone Leu-TAG_model.cm aligntRNAdb-Leu-TAG.sto NSEQ 282 EFFN 2.508636 CKSUM 3220087553 STATS LOCAL MSV -9.2290 0.71874 STATS LOCAL VITERBI -9.8631 0.71874 STATS LOCAL FORWARD -3.6211 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19247 1.58997 1.43197 1.37137 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 0.00000 * 1 0.39521 2.87517 1.58974 2.71690 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 2 3.26928 0.22222 3.05780 2.16946 2 C = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 3 3.06817 1.93378 2.83164 0.28771 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 4 3.03428 1.89569 2.79690 0.30019 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.04978 3.52720 3.95439 1.01715 0.44883 1.09861 0.40547 5 3.05578 1.97013 2.81799 0.28270 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 6 2.47740 1.82976 2.23116 0.43358 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 7 0.31209 2.84914 1.93723 2.71672 8 A = - ( 1.38629 1.38629 1.38629 1.38629 0.04504 3.95439 3.69410 1.46634 0.26236 1.09861 0.40547 8 0.75790 2.00911 1.97490 1.35299 9 a + - , 1.38629 1.38629 1.38629 1.38629 0.03932 3.94867 3.94867 1.46634 0.26236 0.93282 0.49996 9 0.16465 3.20831 2.85341 2.92359 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 10 2.46793 3.26265 0.18067 3.16436 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 11 2.47447 3.10632 0.19558 3.02271 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 12 0.37398 2.86442 1.66767 2.71342 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 13 2.66943 1.67964 2.40844 0.42417 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 14 0.39327 2.59466 1.95317 2.21953 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 15 1.24590 2.54096 0.65740 2.15995 16 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 16 1.08424 1.60571 1.90962 1.16168 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.86522 3.95439 0.58005 1.46634 0.26236 1.09861 0.40547 17 1.16596 1.71781 1.49975 1.25270 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11945 2.64717 3.17634 0.93272 0.50002 0.06624 2.74743 18 0.17828 3.14839 2.76170 2.86149 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 19 2.78154 3.67031 0.13509 3.24553 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04826 3.95439 3.57772 1.46634 0.26236 1.09861 0.40547 20 1.77577 1.56486 2.40165 0.63307 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.06240 3.19042 3.94558 0.89648 0.52425 0.86385 0.54738 21 1.03925 1.71456 2.09954 1.06792 25 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 22 0.49224 2.57678 1.51924 2.36609 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 23 2.92489 1.89492 2.66649 0.31951 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 24 3.15780 0.23497 2.92815 2.17694 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 25 3.33874 0.21486 3.07625 2.19168 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 26 0.68057 2.35954 1.32676 2.01084 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 27 2.96043 1.82833 2.73095 0.32523 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.04928 3.54342 3.95439 1.03126 0.44092 1.09861 0.40547 28 2.91503 1.77426 2.68874 0.34500 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 29 2.52355 3.27551 0.17283 3.20040 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 30 2.29697 3.09398 0.21934 2.97460 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 31 2.07601 1.33481 1.87341 0.78140 36 u = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 32 2.69628 0.25545 3.27716 2.11824 37 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 33 2.68463 2.63595 3.20496 0.19901 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 34 2.68463 2.63595 3.20496 0.19901 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 35 0.14220 3.31867 3.03502 3.03075 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 36 2.78154 3.67031 0.13509 3.24553 41 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 37 2.78154 3.67031 0.13509 3.24553 42 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 38 0.31977 2.47879 2.46338 2.25674 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 39 0.94790 1.98947 1.13440 1.87038 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 40 3.19280 0.27961 2.91770 1.90509 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 41 3.40665 0.20422 3.10919 2.23559 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 42 0.38778 2.85311 1.63267 2.68282 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 43 0.37033 2.89487 1.66759 2.72595 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 44 0.14220 3.31867 3.03502 3.03075 49 A + - , 1.38629 1.38629 1.38629 1.38629 0.60157 3.95439 0.83730 1.46634 0.26236 1.09861 0.40547 45 0.46116 2.29257 2.10715 1.91831 50 A + - , 1.38629 1.38629 1.38629 1.38629 0.42472 3.42045 1.16044 1.46634 0.26236 3.20196 0.04153 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 47 1.80351 1.30578 1.07710 1.49728 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 48 1.80143 1.30641 1.07787 1.49687 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 49 1.80056 1.30668 1.07820 1.49669 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 50 1.80027 1.30677 1.07831 1.49663 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 51 1.80026 1.30678 1.07831 1.49663 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 52 1.80038 1.30674 1.07827 1.49665 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 57 1.73156 1.21965 1.16163 1.53860 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 58 1.73140 1.21972 1.16169 1.53855 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 59 1.73130 1.21976 1.16172 1.53852 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 60 1.73131 1.21975 1.16172 1.53852 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 61 1.73155 1.21966 1.16163 1.53859 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 62 1.73217 1.21939 1.16141 1.53878 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08888 2.46462 64 0.24902 2.90521 2.39275 2.59937 69 A + - , 1.38629 1.38629 1.38629 1.38629 0.05532 3.37137 3.93854 0.90303 0.51977 0.74133 0.64718 65 0.67639 1.83029 2.13657 1.54588 71 A + - , 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 66 1.25789 1.44475 1.62921 1.25928 72 a = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 67 2.74265 1.46472 2.49280 0.47517 73 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 68 2.95704 1.77709 2.71386 0.33881 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 69 2.63674 3.32093 0.15796 3.25971 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 70 2.63603 3.32005 0.15811 3.25849 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 71 2.68463 2.63595 3.20496 0.19901 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 72 2.78154 3.67031 0.13509 3.24553 78 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 73 2.70594 0.22203 3.32979 2.33822 79 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 74 0.20338 2.99403 2.67390 2.73388 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 75 0.14220 3.31867 3.03502 3.03075 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 76 2.15355 0.41606 2.79572 1.81266 82 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 77 2.68463 2.63595 3.20496 0.19901 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 78 3.45584 0.18771 3.15567 2.33335 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 79 3.45681 0.18762 3.15610 2.33354 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 80 0.39541 2.87894 1.58878 2.71472 86 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 81 0.55102 2.65525 1.30417 2.50150 87 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 82 1.06098 1.79782 1.30930 1.52228 88 a = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 83 2.98832 2.22689 2.66134 0.25889 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 84 0.48632 2.42690 1.63685 2.28069 90 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 85 0.32043 3.00414 1.80708 2.80596 91 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 86 0.35153 2.96573 1.69381 2.79605 92 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 87 0.33068 3.00685 1.75458 2.82791 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 88 2.45103 3.23177 0.19059 3.04001 94 G = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 89 2.94430 1.90403 2.68647 0.31434 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 90 0.23968 2.90636 2.49483 2.57784 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01974 3.93503 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Gly.cm0000644000543100007160000017240112573631164021423 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Gly STATES 289 NODES 76 CLEN 90 W 104 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:47 2015 COM [1] cmbuild --hand --enone Gly_model.cm aligntRNAdb-Gly.sto COM [2] cmcalibrate --seed 208 Gly_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1209562705 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.5222 0.71867 ECMLC 0.57077 -7.86349 2.59640 1600000 469890 0.002554 ECMGC 0.27945 -46.04138 -29.01193 1600000 46643 0.008576 ECMLI 0.56203 -7.60541 2.92677 1600000 446622 0.002687 ECMGI 0.29361 -40.91744 -24.88889 1600000 44247 0.009040 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 104 133 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 18 39 106 134 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 40 106 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - A - + MR 3 2 3 5 5 24 47 104 133 -13.126 -0.001 -12.941 -13.153 -14.045 1.999 -10.184 -9.419 -9.524 D 4 2 3 5 5 15 35 103 132 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 38 105 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 A U = = MP 6 5 3 10 6 24 47 103 132 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.517 -12.435 -13.579 -7.892 -10.337 -9.854 1.896 -10.523 -0.297 -7.817 -11.597 -9.723 -8.893 ML 7 5 3 10 6 16 37 102 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 37 102 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 33 99 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 38 103 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 38 103 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 U A = = MP 12 11 6 16 6 24 45 101 130 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -1.392 -10.571 2.774 -9.692 -10.530 -7.598 -10.650 -9.793 3.064 -10.943 -1.333 -9.332 ML 13 11 6 16 6 16 36 100 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 36 100 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 33 97 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 37 101 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 38 101 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 U A = = MP 18 17 6 22 6 23 43 99 128 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 0.468 -10.571 0.893 -9.692 -10.530 -7.600 -10.650 -9.795 3.670 -10.943 -6.480 -9.332 ML 19 17 6 22 6 16 36 98 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 36 98 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 33 95 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 37 99 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 37 99 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 C G = = MP 24 23 6 28 6 21 41 97 126 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -1.381 -10.571 3.283 -9.692 -10.530 -7.598 -10.650 -9.793 2.472 -10.943 -1.679 -9.332 ML 25 23 6 28 6 16 36 96 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 36 96 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 33 93 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 97 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 37 97 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 U A = = MP 30 29 6 34 6 19 39 95 124 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.627 -0.570 -10.571 2.082 -9.692 -10.530 -7.598 -10.650 -9.794 3.373 -10.943 -0.483 -9.332 ML 31 29 6 34 6 15 35 94 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 35 94 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 91 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 95 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 95 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 U A = = MP 36 35 6 40 6 17 37 93 122 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.031 -11.270 -10.383 -2.928 -0.166 -10.549 1.490 -2.232 -10.476 -7.410 -10.612 -9.575 3.550 -10.885 -2.469 -4.207 ML 37 35 6 40 6 15 35 92 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 92 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 90 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 36 93 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 36 93 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 U A = = MP 42 41 6 46 4 15 35 91 120 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.266 -9.692 -10.530 -7.599 -10.650 -9.795 3.757 -10.943 -4.124 -9.332 ML 43 41 6 46 4 14 34 91 120 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 90 119 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 32 89 118 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 35 92 121 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 91 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 89 118 -14.190 -0.000 -12.844 -7.178 -4.891 -4.730 1.971 D 49 47 6 50 3 12 32 88 117 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 34 90 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 88 117 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 11 31 87 116 -8.445 -0.004 IL 53 53 3 53 2 13 33 89 118 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 87 116 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 55 84 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 55 84 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 37 66 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 29 G C = = MP 58 57 1 62 6 2 3 37 66 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.707 -8.646 -13.127 -2.248 -13.491 -9.917 -7.934 -12.908 -9.991 3.860 -10.222 0.323 -8.255 -10.342 -10.319 -11.901 ML 59 57 1 62 6 1 1 35 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 35 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 32 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 36 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 36 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 28 U A = = MP 64 63 6 68 6 2 3 35 64 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.107 -11.378 -10.426 -7.616 -8.779 -10.573 -1.813 -9.693 -10.529 -7.591 -10.650 -9.765 3.971 -10.944 -6.482 -9.331 ML 65 63 6 68 6 1 1 33 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 33 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 31 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 34 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 34 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 27 A U = = MP 70 69 6 74 6 2 3 33 62 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 71 69 6 74 6 1 1 32 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 31 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 29 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 33 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 32 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 26 U G = = MP 76 75 6 80 4 2 2 31 60 -13.280 -13.487 -0.009 -7.371 -11.109 -11.391 -3.118 -7.627 -8.777 -10.571 -0.848 -9.692 -10.530 -7.599 -10.650 -9.794 0.269 -10.943 3.818 -9.332 ML 77 75 6 80 4 1 1 31 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 30 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 29 58 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 32 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 31 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - a - + - ML 82 81 6 84 3 1 1 29 58 -14.182 -0.057 -4.695 0.867 -0.969 -3.321 0.646 D 83 81 6 84 3 0 0 27 56 -8.495 -4.008 -0.097 IL 84 84 3 84 3 1 1 30 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 28 57 -14.125 -0.600 -1.556 1.825 -3.236 -2.210 -2.898 D 86 84 3 87 3 0 0 27 56 -11.150 -6.663 -0.015 IL 87 87 3 87 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - u - + - ML 88 87 3 90 3 1 1 27 56 -13.526 -0.879 -1.133 0.528 -0.114 -6.276 0.696 D 89 87 3 90 3 0 0 27 56 -14.176 -9.689 -0.002 IL 90 90 3 90 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 26 55 -12.648 -3.059 -0.185 -0.709 -0.163 -5.810 1.309 D 92 90 3 93 3 0 0 27 56 -15.005 -0.238 -2.718 IL 93 93 3 93 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - A - + - ML 94 93 3 96 3 1 1 27 56 -13.451 -0.000 -12.105 1.086 -0.455 -0.845 -0.758 D 95 93 3 96 3 0 0 24 53 -14.296 -1.858 -0.466 IL 96 96 3 96 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - c - + - ML 97 96 3 99 3 1 1 26 55 -13.695 -0.739 -1.319 0.445 0.593 -2.739 -0.028 D 98 96 3 99 3 0 0 20 49 -13.833 -9.346 -0.002 IL 99 99 3 99 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 26 54 -1.928 -0.441 -11.610 -1.246 0.169 -6.249 1.288 D 101 99 3 102 3 0 0 20 49 -6.209 -0.022 -9.205 IL 102 102 3 102 3 1 1 27 56 -0.921 -1.087 -9.645 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.915 -9.301 -9.231 -2.145 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.665 -1.910 -2.522 -1.361 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 A U = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.067 -2.585 -7.885 3.177 -9.016 -8.481 -1.983 -3.812 -8.323 2.418 -8.569 -0.853 -1.810 -4.213 -6.090 -2.355 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 u a = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.400 -8.102 -8.399 -2.581 -2.863 -4.128 2.587 0.091 -8.257 -2.252 -8.770 -3.698 2.935 -8.582 -1.036 -2.990 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.104 -11.363 -10.426 -7.602 -0.802 -10.576 -4.494 -9.694 -10.527 -7.581 -10.650 -9.730 3.940 -10.945 -6.485 -9.330 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.475 -8.655 -12.521 -0.275 -13.362 -10.034 -7.929 -12.402 -9.979 3.798 -10.245 0.317 -8.210 -10.414 -10.255 -11.223 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.421 -9.329 -7.134 3.986 -11.961 -12.372 -8.478 -6.968 -10.296 -5.972 -10.809 -3.299 -8.430 -11.576 -10.050 -6.991 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.355 1.889 -9.796 -1.769 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.752 -4.391 -10.649 1.982 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 1 6 50 70 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - + - ML 166 165 2 168 3 1 6 50 70 -14.190 -0.000 -12.844 -0.056 -0.135 -4.826 1.065 D 167 165 2 168 3 0 5 48 69 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 5 49 69 -14.843 -0.000 1.882 -9.296 -1.685 -9.071 D 170 168 3 171 2 0 4 48 68 -8.445 -0.004 IL 171 171 3 171 2 1 6 50 70 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 68 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 33 53 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 3 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - G - + - ML 231 230 2 233 3 1 5 33 53 -5.376 -0.035 -12.844 -1.378 -10.303 1.853 -9.373 D 232 230 2 233 3 0 1 31 52 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 3 33 53 -3.813 -0.124 -6.513 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - U - + - ML 234 233 3 236 5 1 5 32 52 -13.126 -0.001 -12.941 -13.153 -14.045 -1.136 0.325 -2.348 1.068 D 235 233 3 236 5 0 0 31 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 2 32 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 92 U A = = MP 237 236 3 241 6 2 6 31 51 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.085 -10.571 1.185 -9.692 -10.530 -7.599 -10.650 -9.795 3.735 -10.943 -2.665 -9.332 ML 238 236 3 241 6 1 2 29 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 2 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 2 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 91 U A = = MP 243 242 6 247 6 2 6 29 49 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.426 -7.627 -4.109 -10.571 2.946 -9.692 -10.530 -7.599 -10.650 -9.794 3.019 -10.943 -3.143 -9.332 ML 244 242 6 247 6 1 2 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 2 27 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 2 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 2 28 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 90 u a = = MP 249 248 6 253 6 2 5 27 47 -14.078 -6.098 -0.022 -12.794 -13.073 -13.468 -9.928 -9.802 -9.657 -2.415 -3.442 -10.141 2.913 -9.056 -9.621 -1.980 -9.960 -7.541 2.924 -9.982 -1.608 -8.374 ML 250 248 6 253 6 1 2 26 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 2 25 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 2 27 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 3 26 46 -4.301 -0.118 -7.813 -5.980 -7.086 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 88 G C = = MP 255 254 6 259 6 2 3 25 45 -14.078 -14.017 -0.054 -12.794 -7.395 -5.032 -11.284 -3.462 -12.113 1.375 -13.237 -10.147 -7.911 -12.049 -9.966 3.714 -10.264 -2.485 -8.158 -10.477 -10.185 -10.787 ML 256 254 6 259 6 1 2 25 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 2 24 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 2 25 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 2 24 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 87 G C = = MP 261 260 6 265 4 2 2 23 43 -13.225 -13.432 -0.902 -1.106 -11.238 -0.771 -12.062 1.350 -13.066 -10.020 -2.240 -12.047 -9.899 3.659 -10.182 -6.363 -8.008 -10.344 -10.011 -10.778 ML 262 260 6 265 4 1 1 24 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 43 -6.588 -5.617 -3.484 -0.185 -1.510 1.556 -2.325 -0.972 D 264 260 6 265 4 0 0 21 41 -8.579 -8.260 -0.970 -1.048 IL 265 265 5 265 4 1 1 26 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 2 21 42 -4.701 -0.057 -11.936 -0.193 -0.689 -1.347 1.079 D 268 266 6 269 3 0 0 20 41 -14.515 -0.123 -3.618 IL 269 269 3 269 3 1 1 21 42 -3.628 -0.141 -6.328 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 20 41 -14.136 -0.000 -12.790 -0.069 -0.948 -1.267 1.079 D 271 269 3 272 3 0 0 19 40 -10.915 -0.038 -5.307 IL 272 272 3 272 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - A - + - ML 273 272 3 275 3 1 1 19 40 -14.190 -0.017 -6.411 1.101 0.365 -3.164 -1.135 D 274 272 3 275 3 0 0 18 38 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 18 39 -5.009 -0.046 -12.827 1.223 -1.341 -1.410 -0.160 D 277 275 3 278 3 0 0 14 34 -9.350 -0.114 -3.742 IL 278 278 3 278 3 1 1 21 41 -1.309 -0.759 -7.462 0.000 0.000 0.000 0.000 [ MATL 72 ] 83 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.190 -0.031 -5.559 1.623 -1.500 -2.803 -1.244 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 84 - a - + - ML 282 281 3 284 3 1 1 6 12 -5.150 -0.553 -1.786 0.868 0.041 -1.594 -0.294 D 283 281 3 284 3 0 0 6 12 -0.094 -5.649 -4.528 IL 284 284 3 284 3 1 1 6 12 -4.681 -0.066 -7.381 0.000 0.000 0.000 0.000 [ MATL 74 ] 86 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.197 0.992 -6.971 0.836 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Gly LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:47 2015 COM [1] cmbuild --hand --enone Gly_model.cm aligntRNAdb-Gly.sto NSEQ 282 EFFN 5.658417 CKSUM 1209562705 STATS LOCAL MSV -8.7206 0.71867 STATS LOCAL VITERBI -9.6060 0.71867 STATS LOCAL FORWARD -3.7946 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17432 1.53733 1.63632 1.26825 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 0.00000 * 1 0.57393 3.35968 1.02501 3.14293 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 2 2.83444 0.87637 2.60548 0.79609 2 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 3 3.17663 1.29795 2.98555 0.45465 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 4 2.88120 0.64960 2.65014 1.04686 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 5 2.79268 1.09655 2.57670 0.63734 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 6 2.39080 1.22293 2.23239 0.67963 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 7 3.46466 1.44667 3.27862 0.36286 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 8 3.00591 2.87152 3.37568 0.15117 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 9 0.04873 4.34243 3.98092 4.14237 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 10 2.83203 3.88773 0.10821 3.76471 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 11 4.10994 2.54398 3.97269 0.12080 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 12 0.09230 4.18384 2.89591 4.03510 12 A = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 13 3.50850 1.91880 3.55537 0.22978 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02813 4.44715 4.13346 1.46634 0.26236 1.09861 0.40547 14 0.97496 1.78565 2.23923 1.05394 14 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05364 4.44282 3.20727 1.46634 0.26236 1.21446 0.35222 15 0.28232 2.67335 2.43299 2.41715 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.32203 4.41370 1.33479 1.46634 0.26236 1.75936 0.18893 16 1.15634 1.50782 2.23670 1.02957 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.39907 4.12454 1.16192 1.46634 0.26236 3.27878 0.03840 17 1.49755 1.52501 2.19951 0.80331 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.67148 3.77255 0.76345 1.46634 0.26236 0.20497 1.68561 18 0.89797 1.68456 1.78292 1.43158 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03402 4.09090 4.09090 1.46634 0.26236 1.26685 0.33089 19 1.17108 1.25029 2.14847 1.24867 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.35850 4.20242 1.25066 1.46634 0.26236 2.66704 0.07199 20 1.62262 1.42104 2.30417 0.77367 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.20519 1.80069 3.89598 0.86657 0.54541 0.05240 2.97499 21 0.14182 3.40814 3.36728 2.73900 25 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 22 2.08616 3.70046 0.19903 3.45466 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 23 4.22469 3.29544 3.97860 0.07299 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 24 0.13871 4.12990 2.39017 3.82507 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 25 3.91180 0.17364 3.69811 2.16605 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 26 0.43970 2.22175 2.37073 1.87119 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 27 1.09552 2.36639 0.77785 2.18548 31 g = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 28 2.12024 1.03707 1.95069 0.95886 32 u = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 29 4.38574 2.83256 4.26004 0.08931 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 30 2.39447 3.59165 0.16321 3.44794 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 31 0.09606 4.38371 2.76589 4.12320 35 A = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 32 3.41710 0.16367 4.00359 2.30342 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 33 3.39919 3.07399 3.92460 0.10468 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 34 3.67839 3.48046 4.22228 0.07335 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 35 4.10410 0.05959 4.58928 3.46788 39 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 36 4.10410 0.05959 4.58928 3.46788 40 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 37 0.04873 4.34243 3.98092 4.14237 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 38 0.04873 4.34243 3.98092 4.14237 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 39 4.31234 3.23372 4.17585 0.07061 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 40 3.66603 0.23447 3.41522 1.89335 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 41 0.09067 4.42034 2.83787 4.12900 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 42 1.10442 2.12146 0.97723 1.75801 46 g = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 43 2.47607 0.87830 2.19693 0.94342 47 c = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 44 1.38346 1.49406 2.42096 0.83013 48 u + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 45 0.16781 3.52256 2.42196 3.31841 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.45141 4.44715 0.28230 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 47 1.80306 1.30592 1.07727 1.49719 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 48 1.80073 1.30663 1.07814 1.49673 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 49 1.79970 1.30695 1.07852 1.49652 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 50 1.79931 1.30707 1.07867 1.49644 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 51 1.79922 1.30710 1.07870 1.49642 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 52 1.79928 1.30708 1.07868 1.49643 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 57 1.73052 1.22009 1.16201 1.53829 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 58 1.73043 1.22013 1.16204 1.53826 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 59 1.73041 1.22014 1.16205 1.53826 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 60 1.73054 1.22009 1.16200 1.53829 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 61 1.73093 1.21992 1.16186 1.53841 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 62 1.73180 1.21955 1.16154 1.53867 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03059 3.50229 64 2.26363 3.79971 0.17254 3.43812 68 G + - , 1.38629 1.38629 1.38629 1.38629 0.04225 3.51797 4.44715 0.66160 0.72572 1.09861 0.40547 65 1.67873 1.29967 2.28081 0.82425 70 u + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 66 3.22843 1.41014 3.01466 0.40465 71 U = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 67 3.10978 0.79288 2.88024 0.80580 72 c = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 68 2.56141 0.88034 2.30335 0.89590 73 c = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 69 1.83635 3.30918 0.27237 3.15857 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.05241 4.44715 3.23527 1.46634 0.26236 1.09861 0.40547 70 1.67166 2.82573 0.37116 2.76679 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.45780 4.41912 1.03484 1.46634 0.26236 0.96060 0.48234 71 1.36183 1.66552 1.93093 0.89232 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06128 3.18333 4.01778 0.71817 0.66874 0.14308 2.01505 72 1.33262 1.77358 1.94578 0.85893 78 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02439 4.41895 4.41895 1.46634 0.26236 0.46554 0.98831 73 0.82360 1.36064 2.30355 1.58596 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03263 4.44715 3.89276 1.46634 0.26236 1.09861 0.40547 74 0.78364 1.92090 1.96820 1.35838 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04785 3.35496 4.43843 0.83682 0.56754 0.76493 0.62617 75 0.47455 2.10198 2.38954 1.80818 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 76 0.96871 1.48954 1.99710 1.35007 84 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29575 3.43362 1.49721 0.61473 0.77824 1.09861 0.40547 77 1.90830 0.96081 2.62356 0.92498 86 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06100 4.20884 3.11656 1.46634 0.26236 0.09956 2.35635 78 3.01095 0.39967 2.64963 1.56287 87 C = - > 1.38629 1.38629 1.38629 1.38629 0.02427 4.42367 4.42367 1.46634 0.26236 0.51337 0.91249 79 3.39228 0.31125 3.12372 1.66155 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.03510 3.78186 4.44715 0.83050 0.57240 1.09861 0.40547 80 1.00599 2.46747 0.79190 2.33784 90 g = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 81 0.87847 3.04903 0.73351 2.86541 91 g = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 82 0.44264 3.17834 1.32685 2.98198 92 A = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 83 0.40365 3.43811 1.34655 3.22230 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 84 0.71899 2.40857 1.19468 2.12015 94 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 85 0.70336 2.75057 1.01016 2.56357 95 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 86 1.13319 2.82434 0.60205 2.64565 96 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 87 0.41167 3.15260 1.41809 2.94615 97 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 88 0.87105 2.78175 0.80863 2.60246 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 89 3.38134 1.23342 3.16128 0.45834 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 90 0.04873 4.34243 3.98092 4.14237 100 A + - : 1.38629 1.38629 1.38629 1.38629 0.01192 4.43536 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-euk-iso.i1m0000644000543100007160000307452313054777036020140 0ustar pchanlowelab=H **+++,,,---...///000000111111222222333333444444555666777888999:::;;;<  !!!!!!"""###$$$%%%&&&'''((()               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D9 ;pl9?@>`7?>>>>]<|?˴8{=?h?ÓE<>>>>3>u<t?[<l";S;>>>>8h!8?c8kC8&l8#D80E;c8<9o!~:_b?rL8Cm8ُ=X78;<78tC<H 9=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>8h!8?c8kC8&l87p7 8hJ=;7=]8:8>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>8h!8?c8kC8&l8r7;A>5Ɏ< 3Q6Q~;U+9E,6Uѫ;}m?8 = 97s;7G6=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>8h!8?c8kC8&l8{7V?>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>,8tg8Y?`-9:744>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>p48 ?28ğ;|?V;?:5b<>,?ty>B? h=>>>>p48 ?28a9G?S8(`>5b<>,?ty>B? h=>>>>p48 ?28B>~>~>>5b<>,?ty>B? h=>>>>p48 ?28B>~>~>>5b<>,?ty>B? h=>>>>p48 ?28B>~>~>>5b<>,?ty>B? h=>>>>p48 ?28ji}?fQ9},?ty>B? h=>>>>?|?y;_;9?@>`7?>>>> euk-iMeteuk-iMet-r2-031616 AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCuuuAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUA  !"#$%&'()*+,-./0CDEFGIJKLMNOPRSTUVWXYZ[\]^_`ZThu Mar 17 11:18:14 2016cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-iMet-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-iMet-r2-031616.sto cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-iMet-r2-031616.cmL=L=Hz>Hz>V瞯<77ѶC[1>>>>ݵt 8?ݰmQ? .VK3Mg'EjE|'fx?]K=?(yyI{fICjBsFz?K7? m9E|'f?j 3ۃ`?6>W[?bŏ17@j3\Jb?HZ?=a=U^=>@=9)?W=xk<[?'7=.ۣ=ϛ> P=$>>Y2)>jU=n?4={>6NX>,x>K> f>Zڐ=5?Cյ=k?=V=%@<_?j=Z&=uQ?5F=X>L=w>?r=L<=]ZA?:r=">=u=;?Vg=vF?x=v">\=lJf=04H=AH?n= Q[=8> |=G?1d=xO>? >9P|>2>>,=Ք==>?=-+=2u=A?Ŏ=믦=?=mS?5=>O]>X>YD>>O]>X>YD>>O]>X>YD>[c?v<4==T`?U ===*=f=O?F@=:=_=~6?օ=!>^g=GP4?2=G(>K>=ё>%>% >C>?(=̙]?=~^D=vD=H>B'j=2??!= x= V<#`?^ =y==(rf=@?BΕ=C?{.=#U=*>O>n>I>4ԏ>+X>X>UD>t6>o>5>>U">d="? \=X= =@W?4=Z_?=1=x?=tX=j}==Z?,=L?. =v,=q=d=~O?vgN=d?==aj=".Y?t.=.Q=vm=<)b? <7=&= = Q?C\5=n =CV=?<=VW>8V>:]>60>W>n}>+>X{>|>v=I>j>c>=+?2=0>}$>^>H{>>K=?H>5X>Q=n>q?{=<>`? ==f+?G=&?>ͽ=j2=%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>w?T<TD??v?TD?Ī>t*?sw?VD?V=>R?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?ju?U<T<>?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?$r?=T<1>ig?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?u?<T<>"?Ī>t*?t?<T<>>?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?+w?T<\ D?Ī>t*? Ps?GC ={s

$?yd> N'?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?u?<T<>"?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?u?W <T<>g!?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?w?T<TD?Ī>t*?{?f<Nl>D?? euk-iMeteuk-iMet-r2-031616 AGCaGaGUGGCGCAGCGGAAGCGUGCuGGGCCuuuAACCCaGAGGUCgguGGAUCGAAACCaucCuCUGCUA (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-iMet-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-iMet-r2-031616.stoy]@Thu Mar 17 11:18:14 2016  !"#$%&'()*+,-./0CDEFGIJKLMNOPRSTUVWXYZ[\]^_`[1B` t 8?Xt 8?+mt 8?OǀOǀOǀOǀOǀO3~>?k> ><>IT  !!!!!!""""""######$$$%%%&&&'''((()))***+,,---./000000111111222222333333444555666777899:::;;;<<<<<<======>>>>>>??????@@@@@@AAABBBCCCDDDEEEFFFGGGH                                                      """""#((((()...../222555789:>>>>>?DDDDDEJJJJJKPPPPPQTTTWWWZZZ]]]```cccfffiiillloorrrwwwwwx}}}}}~      n "#####())))).///222556789999>?????DEEEEEJKKKKKPQQQTTTWWWZZZ]]]```cccfffiiill8ooorrrrrwxxxxx}~~~~~6      $*036789:@FLRUX[^adgjmnpsy 358/8622-2/622-36411-2220/-110..-//.-,-.-,+*-,-*)+)(*()++*&,)''!'"(%% '(%#$ %$#"! #"!  !!     r rsrZ|2   $     fhhgcifdd^d_ebb]deb`a]ba`_^]`_^]]\^^\[[\\\ZZY\[\XWYWVXV77++,-+**)-,++)',,+++%,+*-,"'+!&* # $(#'"&$&'&#&%$#$$#!!""!  4H5565-55314-301-.,11/,-,0,&%$-6-,-,+,++*)+*)+))(*'+*)*)%**)))#*)(+* %)$(""&!% ;76a?B9Q>9M=c'?*>>>>>ˆ>*S.?#od=>>>>uy<3|?78ӄ7YZ{?:i<;<>}=!=>(?4ʭ>9 u:59>>>>)g7Ip7N;97:EV?z3:]5;wn;cb>;KD>;F`> >;vx< >BH|<>Y=*>>>>:OW;w=z=,=E#\?iX+>>j$?]5=<@=>>>>?O;@F-94::>>>>>>> 7{< 9=9?>v-:W$>J>47x0;HE9=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >J#7E_%8[>:L9[9ґ?iX+>>j$?]5=<@=>>>>)?T>19 ^:y9>>>> 7v7|?77ڙ}<47 8: =*S;9%$?-97i(=;:>Š9˂=#;=W<X)<8y>>;KD>;F`> >k; +<א ?~.<>p=%?O=>Iy>J#7E_%8[>:L9[9ґ?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>> 77?d9$$7&U7$X;O;7&?077 >9z7!>k7g%;@=UW88tB;=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >"47\7$>':9\9l9?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>} 7i7?9 7GK9R76 8= ;3 8s/>e7z:5 >I7 *; ? 9% <*C=u>(>:>T><<>$<?o=4>KD>;F`> >x7/@8g0:59T9?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>> 77?7nk7R7 8G8I6:>=/978=77X>r7|><G:e=:=W<X)<8y>>;KD>;F`> >;D>|p<փ>O=Xq>-<>7=>>x7/@8g0:59T9?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Ik7YL7?_8]9^:#+-9?W79. <77o0[>9Ȅ;)d=l 18k:VU< e=s=6*4? >4>KD>;F`> >=^0=z>-?4>KD>;F`> >9J|? <ܿ; >';F>> =>>>>09?Ɍ>Mt9>>>>b6R?V7I:ڭ:;~?5b<>,?ty>B? h=>>>> 6?;6:|?;<;C?@>`7?>>>>??i9 88K7~<;5|? 7n7~K77c: 8>;7@9UW<' :2:Vm?:8c8s;j;)-?T>;# =m@>a>=Ek><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?մ<;z?n ;l:':>>>><Âx?P:; 4;>>>>t7;Sr~?}7P71K7m6@S6 :@38i;X:_u?mQ;6?<697#<668;{\7=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>(>>>Wm70 7?t77K7n6AS6:`38g;Dz6p?;hڿ6M:<:7oY)<6<{\7=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>d7!E7?@8s%=)7M6~94>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>b6R?V7s~?(;WAe8 ;5b<>,?ty>B? h=>>>>b6R?V7<7yy?';5b<>,?ty>B? h=>>>> E=*k?[7f<˲>A9<\!?5b<>,?=d?:>>>>b6R?V7V<67y?v;5b<>,?ty>B? h=>>>>b6R?V7Z;M Q8 X~?ޞJ;5b<>,?ty>B? h=>>>>6bA?y>E*9;C;e}?5b<>,?ty>B? h=>>>><ɝ{?7;p?,JB;^=,:73{?b‚<X>>>y6P?7\S='9=ro=@X?F3:>Iw?=ty>B? h=>>>>?Hw?Z8͚`7?>>>>څ<}?Z7>'>>>?r~7'?(; =:7x=RK ;l?aA<[=?[=;X)>3>[@>&}5?p=F>>>7@ 7?27C75L74R;f-8`sw9T>^<E<3s7;W ?k:7x='t:+_E7)h>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>ۖ9)L 7?L9}7[K7?78q`9=@ 9r7>~9#9=79[D?r:Q1;4:=W<X)<8y>>;KD>;F`> >W4;.;jC?;I> >>>[@>&}5?F<p=t<>>>>70 7?77K7c8=98s>7n9n(wp;*;&=z(:l:u*<;XK;R>?*,;?}=#B>=?><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Wm70 7?77K78:8P;::Ԡ?>t&:͔9F?sK7:);ڢ;;uҷ<8p;a;*%?u>ur;M=6P>K>=<<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>d7!E7?@88y-<Е:y.#?7U7g=g=<_9f>Z7;m=Y4:|9Q; e=s=6*4? >4>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>6?u99z;>0P<>5b<>,?ty>B? h=>>>>~6R?Lr7h;I <;z?>;Ÿ=f?ty>B? h=>>>>~6R?Lr7>>,>p->Ͽ;H? 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?0>%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?NW?av>8d<?>Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?8U?>8d<V?&$>Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?%x?8d<8dD?Ī>t*?^|?k:h<Nl>D??euk-SeCeuk-SeC-050216 =========++======++++============++***++============++++==========+++++++=============+ GCccggaUGAgCuucggUGGUgcgGgGuGCgGGCUUCAAACCcGUaGcuGucUAGcggCagAGuGGUUCgAUUCCaCCUuucggGCG (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>><<<<<<____>>>>>><<<<_______>>>>))))))))):cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-SeC-050216.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-SeC-050216.stoA#@Mon May 2 18:05:24 2016  !"#$%&'()*+,-./01234589:;=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[^w'2w 7?mV7?y7?OǀOǀOǀOǀOǀOzG>0>u>T^> GR  !!!!!!""""""###$$$%%%&&&'''((()))*++,,,-.//////000000111111222222333444555677888999::::::;;;;;;<<<<<<======>>>>>>???@@@AAABBBCCCDDDEEEF                                                    """""#((((()...../222555789:>>>>>?DDDDDEJJJJJKPPPPPQTTTWWWZZZ]]]```cccfffiiilloootttttuzzzzz{k "#####())))).///222556789999>?????DEEEEEJKKKKKPQQQTTTWWWZZZ]]]```cccfffii8llloooootuuuuuz{{{{{6 $*036789:@FLRUX[^adgjkmpv|57819744/42773/56532/34330/231/0+/0/-/+.--,+*,-+*+*)*)XZ[ZV[XXVQUVWWTOVWUTSOTURTPORSPOOKPPNMNKMMLKJJLMJIKIHIH))                    2 dfdQmE2231#12020#20-10#..,0/"0  #%#"#" "!         2211.220//-00..-,..,-,,.-*),)(+(','&$~ueubbcaTbb`baSc`^a`S^^\`_S`,%$=?=<=<;<;::8;:9:87997:87675:7636,:6599 $)$(#'"&!% V7p6/?49Q>9M=c'?*>>>>>ˆ>*S.?#od=>>>>;)?>L9c6: x9>>>>ϰ;g<hs?U77?zb;aa>;KD>;F`> ><<>$<?o=4>KD>;F`> >S:Rd;i= #=!=sY?Z>>>>'}:_>>>>>7:D7f?7hn7e=`7Z89} ;'>]:/7 >|:#8=! 9r>>7>=F&;d69z?H 1<ƈ7Y8z:&:.7:o?iX+>>j$?]5=<@=>>>>@K>>?Un9f:E%:>>>>y7k%+; 2:]?@u:9=7<l>l:?=KJZ9=W<X)<8y>>;KD>;F`> >9hV:*h? 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B>)r>?3x?HW<,O?A>y?p=;D?K¥>-?O|?૘;ͮ;Nl>D?>3; ?Fz?ڈJc> G?yz?\;vD?>X?O?s.9=8;>c"?U8>k-=w`?jf>?/=s6>E ?%>u e?m=P}?;;;;Nl>D?2iW?f\">}?j;j;Nl>D?t.?%>}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}?/;/;Nl>D?Ī>t*?}~?ܔ;Nl>D??Cys =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ AGCCCUGuGGUGuAuuuauUauCAUGUuGGAUUGCAAAUucgAAGgggggggaaaagggggggAaGCAGguUaAauucCUGCCGGGGCUU (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))):>cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto=NAFri Jun 26 17:13:50 2015  !"#$%&'()*+,-/0123456789:;<=>?@ABCDEGHIJLMOQRSUVY]^_`abcdefghi 7? 7?l 7?OǀOǀOǀOǀOǀOo>=]>>>!LZ  !!!!!!""""""###$$$%%%&&&'''((()))*++,,,---./000000111111222222333333444444555555666666777888999:::;<<===>>>??????@@@@@@AAAAAABBBBBBCCCCCCDDDEEEFFFGGGHHHIIIJJJK                                                         """""#((((()...../222555789:>>>>>?DDDDDEJJJJJKPPPPPQTTTWWWZZZ]]]```cccfffiiilloootttttuzzzzz{         k "#####())))).///222556789999>?????DEEEEEJKKKKKPQQQTTTWWWZZZ]]]```cccfffii8llloooootuuuuuz{{{{{6        $*036789:@FLRUX[^adgjkmpv|  +,5'+4))%**2((%**0((%)).((%,),('%()*'&$((('%$''&$&%$%$eggedfdcc`ddbaa^bb`__\``^]]Z]^\[[X\\ZYYWZZXWXWZYVUXUTUT33!!      #    030/2/.0.!     $    z||zy{yxxuyywvvswwuttquusrrorsqppnqqonnloomlmlonkjmjijiHH5544155322033110/11/0/.10-,/,+.+'/,+"&!%$-5-,-,,,*++*++)*)(+*)')%**)))#*)(+* %)$(#'"&!% CGCBFBACA.322(33100&11/..$//-,,"--+** ++))())'(')($'"% $-6-,-,+-+**(++)**'))'))'((%)(&('#('$&* %)$(#'"&!% 7U7k?K@9Q>9M=c'?*>>>>>ˆ>*S.?#od=>>>>47?t` 87ݮ7B>2?)9c?<̒<?5>@=yA>[@>&}5?F<p=t<>>>>V77?C88m7M7 7H7w<}8/'71:>7HA7j8R+7L8t?P7}I<7=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>V77?C88m7hy72>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>V77?C88m7X7 8D57f=266Ώ8 177~`?F< >;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>><7{?A887Oy7:Y7?SE6 5ɏ8Rt;a;{=V97> v8%J67lT<=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?x<u;|{?U ;0:L:>>>>[@>&}5?F<p=t<>>>>V77?C88m7T7L; m7QI?7m6f6;jE<~7.U=:v;8N=;6 7s<==W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>O7^څ7g|?Z<8e7>F9";&ۮ<1?L:88u=F.8J9{ړ=8K_Y= >(2:F.=)<=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>/7 78?78@+%=W)9:<3>P8%E88:Pp98=> ==@+8<<ё;~;So{?<=<`P?c-==^0=z>-?4>KD>;F`> >V,=q=W=U>2? 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>4>KD>;F`> >=^0=z>-?4>KD>;F`> >778Z? >';F>> =>>>>ty>B? h=>>>>9KD>;F`> >Op68?ty>B? h=>>>>9KD>;F`> >Op68?ty>B? h=>>>>9KD>;F`> >Op68?ty>B? h=>>>>?4>KD>;F`> >?@>`7?>>>>9j7Y?z:ty>B? h=>>>>҅<{?8n=$8Te?m<4;Q\? >w<.v? ;>>>>47?t` 87ݮ7|2>=t>>[=?[=;X)>3>[@>&}5?p=F>>>V77?C88m7g;9k4zۇ:DŲ;=*;- ;9=c;Bj>\?<9<;u;/G>>=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>V77?C88m7 :":Jj9S>{o99J=JW;a@c9Ì=_<ԫ;><=8>=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>`7\7]{?N8D'<>7~y7L8Y7p ?E6518< 7>F97=`ȗ8Sɰ6&73;=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>|p77lz?818>;KD>;F`> >魯9`:Xn>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>v7P7?r86E5811G5V95p78{5+7]?Iu7$]=9Fc8k7`V7Z,5 e=s=6*4? >4>KD>;F`> > Qv?°3; E<<̑;I{?gs;Ci<tІ:-: {?x<1vf>>>ty>B? h=>>>>@j7?;8Q9)2; ;|?5b<>,?ty>B? h=>>>>@j7?;8Ĭ9٢;,?ty>B? h=>>>>@j7?;88{?D{8<5b<>,?ty>B? h=>>>>@j7?;8_7>Ee<?_;!95b<>,?ty>B? h=>>>>@j7?;87z?w8h#<L<5b<>,?ty>B? h=>>>> ^G<4|?8ka>=@>>5b<>,?%= t?;>>>>?)= *>5x=2`7?>>>>Gln =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ UAGAAAgUGGUGUAgUUGGAAGCACgAAGAGUUUUGAUCUCUUaagggggggaaaacccccccGuauAGGUUCGAgUCCUaucUUUCUAG  "$%'()*+,-.012356789:;<=>?@ABCDEFGHIJKMNOPQRTUVWXY[\]^_`abcdefgheFri Jun 26 17:13:51 2015gcmbuild --hand --enone Gln-final-vert.cm ../Gln-2nd-align.sto cmcalibrate --seed 208 Gln-final-vert.cmL=L=Hz>Hz>V瞯<77Ѷ>D-#>>>> 4r7?Ll> ?sAKUBj ^?ƧϠ?I .V`@jiKu? 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U< UD?> ?Wy?.U<.UD?+>=j+?Wy?.U<.UD?>;+)?QXy?TD?Ī>t*?{u?r% ?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?T>T< :?Nl>D?Ī>t*?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?=0Tv?ki?0=0=Nl>D? <6"x?]?%+=oR=Nl>D?BD?b8<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?b<{?1h?.:=.:=Nl>D?)w?a =?4>Tt*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?2v?Q?Ī>t*?QXy?TD?Ī>t*?XAy?TD?Ī>t*?Wy?U<UD?­>)?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?y]u?3{?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?y]u?3{?Ī>t*?QXy?TD?Ī>t*?̹v?K&?Ī>t*?R@t?>=TĪ>t*?S:y?T<\D?Ī>t*?Wy? U< UD?>>(?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?QXy?TD?Ī>t*?|?\W<Nl>D??LeuTAA =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ GuUgGGGUGGCAgAGCCGGUAuUGCAaAAGgCCUAAGCCCUUuuagggggggucaagggggggaCAGAGGUUCAAaUCCUCUCCcuAaCu (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))):Fcmbuild --hand --enone Leu-TAA-final-vert.cm ../Leu-TAA-2nd-align.sto?@Fri Jun 26 17:13:55 2015  !"$%&'()*+,-./0123456789:;<=>?@ABCDEFGHILMNOQRSTUVWXZ[\^_acdefghij!CM7?\ 7?kW7?OǀOǀOǀOǀOǀOǞ>(i}>z>|>!LZ  !!!!!!""""""###$$$%%%&&&'''((()))*++,,,---./000000111111222222333333444444555555666666777888999:::;<<===>>>??????@@@@@@AAAAAABBBBBBCCCCCCDDDEEEFFFGGGHHHIIIJJJK                                                         """""#((((()...../222555789:>>>>>?DDDDDEJJJJJKPPPPPQTTTWWWZZZ]]]```cccfffiiilloootttttuzzzzz{         k "#####())))).///222556789999>?????DEEEEEJKKKKKPQQQTTTWWWZZZ]]]```cccfffii8llloooootuuuuuz{{{{{6        $*036789:@FLRUX[^adgjkmpv|  (*2$(1&(#''/&&#''-&&#''+%%"*&)%%"&&'%$"%%%$#"%$$"$#"#"defdcdcab_cba__]a`_]][_^][[Y\\[ZZX[ZYYXWYXWXWVYXUSWTSUS**    #      151040/1/      $              vxxwuwvttruutrrpssrppnqqpnnloommmkmmklkjlkikkjmkgfkfehe==**,+*++(++)**&++)*)$**),+"#* #)")"'!& -5-,-,,,*++*++)**(+*)*)&**)))#*)(+*!%)$(#'"&!% $DHDCGCBDB.0//%00.--#..,++!*+)** *)')) **(('((&'&('&%.7.,-,+-+,*),+*+()*)(+')')&**)))#*)(+*!%)$(#'"& % $7/V7i?\9Q>9M=c'?*>>>>>ˆ>*S.?#od=>>>>n7S? 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>';F>> =>>>>ty>B? h=>>>>8?!v9j:f9{?%:16n9?ty>B? h=>>>>8?!v9j:f9{?%:16n9?ty>B? h=>>>>|?{@<`9&]99V(8?16n9?7;\;n}?>>>>?4>KD>;F`> >?@>`7?>>>>bj74?.ŗ>ty>B? h=>>>>k.9?>S8_c?멝=M>>>`7?0y 8g7Ł7#> >g<?[=?[=;X)>3>[@>&}5?p=F>>>y77q[?`8>=7>%6Q;8u< 47mI?r7P97Av88U*7 7'= 7q?9RV7=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>7 7?G 68V8$7@]7v6g7"<;cQ7 o?!7(;<=W<X)<8y>>;KD>;F`> >\e*8r8q:?8fl?9>?XQ90F(:Ҙ:Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>?g<7Z|?068 8s97 [<6/g7UW < <̭Q7B>;KD>;F`> >k*8W8?C8G>;9>?XQ90F(:Ҙ:Cl:;ӏ=Z=V$X=Q1M? 6<>>>[@>&}5?F<p=t<>>>>m77?z887"f6R.8щ5y<ݱ5X7|8I5xs79z?k74d89E]8_7[yQ7{ 6=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>f77R?\8sl64>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>jj7?8H8S<7y?5b<>,?ty>B? h=>>>>jj7?8!9(uA8yT}?x'<5b<>,?ty>B? h=>>>>jj7?8;~}?&9d;5b<>,?ty>B? h=>>>>uj7N?!:k|?#;];-85b<>,?ty>B? h=>>>>)j7?87}?N8OY8Z<;4?,>ty>B? h=>>>>sj7#?4[;+>>g=4=5b<>,?ty>B? h=>>>>?;~"`7?>>>>LeuTAG =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ GCUUUUAAAGGAUAAcuAGUCAUCCaUUGGUCUUAGGAACCAAAAACUUUggGGUaccCAAAUAUCUUGGUGCAAaUCCAAGUAAAAGCU !"#$%&'()*+,-./012345789:;<=?@ABCDEFGJKLMOPQRSTUVWXYZ[\]^_`abcddFri Jun 26 17:13:55 2015scmbuild --hand --enone Leu-TAG-final-vert.cm ../Leu-TAG-2nd-align.sto cmcalibrate --seed 208 Leu-TAG-final-vert.cmL=L=Hz>Hz>V瞯<77Ѷ=De=>>>>L77?eF ^?Jfc]Cj 8h?ꐛ?^HkWAj'0?333333?W}7иp $ @j FѕT b?'@j?,eX7eS.W@jBwIQc?Z[>=' ?N'= v="?Xr]>f>\_?>K>=a>>"">`=[b>=,?>=>:u=̬8?==_=_?=BE=ݩ9=}\=1=2M?-I=SO=v\<@]?=H_?«J<>=>?G?-X?c=$=єD=4%?[=QG>6=_> ʹ>@=.ߡ>a֔>qW>Q;B>$>V9d?z<*&=D==VM!>_=\>B>[>v=]'>>\>@a>X8><62~=X<d?~<X? 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n< nD?<>x*$?x?n<nD?Ī>t*?x?n<nD?Ī>t*?$xv?1<n<>!?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?v?n<D?Ī>t*?ւx?5o<5oD?x>2?qx?/oD?>Y%?x?C+nD?W>Y)?x?n<nD?Ī>t*?x?n<nD?Ī>t*?w?n<D?Ī>t*?x?nD?>r1?x?nD?>r1?>nD?>?b?Z=Wa)= }>??u?+=x?n<nD?Ī>t*?w?n<ܧD?Ī>t*?:?N >/o>Y%?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?rw?n<D?Ī>t*?x?o<oD?zL>?~v?}<n<>1#?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?lx?n<vD?Ī>t*?Jx?9n<9nD?쿮>(?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?ћh?n<^=Nl>D?Ī>t*? >}<9?Nl>D?d >\?Nn?g=g=Nl>D?i<z?Nn?g=g=Nl>D?i<z?A3?_>g=H?_>i<z?Nn?g=g=Nl>D?i<z?A3?g=_>Nl>D?i<z?1h?.:=.:=Nl>D?uD?v>u"Y?Nn?g=g=Nl>D?i<z?Nn?g=g=Nl>D?i<z?Nn?g=g=Nl>D?i<z?A3?g=_>Nl>D?i<z?1h?.:=.:=Nl>D?uD?v>u"Y?Nn?g=g=Nl>D?i<z?Nn?g=g=Nl>D?i<z?Nn?g=g=Nl>D?i<z?Nn?g=g=Nl>D?i<z?A3?g=_>Nl>D?AH?]>l?P>r.D?Ī>t*?^_?n<=Nl>D?Ī>t*?w?ȃ<ȃD?E=rwe? ju?<ȃ<>}!?J?FET>x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?xx?nD?Ī>t*?Jx?.n<.nD?^>P)?yw?n<D?Ī>t*?x?nD?t>E"?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?x?n<nD?Ī>t*?V9|?q<Nl>D??LeuTAG =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ GCUuuUaAAGGAUAAcuAGucaUCCauUGGUCUUAGGAaCCAaAaacuuuggGGUaggcaaguAuCUUGGUGCAAaUCCAAGUAgaAGcu (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))):Fcmbuild --hand --enone Leu-TAG-final-vert.cm ../Leu-TAG-2nd-align.sto=X@Fri Jun 26 17:13:55 2015 !"#$%&'()*+,-./012345789:;<=?@ABCDEFGJKLMOPQRSTUVWXYZ[\]^_`abcde=ꬭ 7?d]7?G7?OǀOǀOǀOǀOǀO4ԏ>b>>Yz>!LZ  !!!!!!""""""###$$$%%%&&&'''((()))*++,,,---./000000111111222222333333444444555555666666777888999:::;<<===>>>??????@@@@@@AAAAAABBBBBBCCCCCCDDDEEEFFFGGGHHHIIIJJJK                                                         """""#((((()...../222555789:>>>>>?DDDDDEJJJJJKPPPPPQTTTWWWZZZ]]]```cccfffiiilloootttttuzzzzz{         k "#####())))).///222556789999>?????DEEEEEJKKKKKPQQQTTTWWWZZZ]]]```cccfffii8llloooootuuuuuz{{{{{6        $*036789:@FLRUX[^adgjkmpv|  (*0$'/%&!&'-%%!&&+%%!&&)$$!(&'$# %&%#" $$#"! #"! 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;p=m; >V=&?>f=@>{=x>ח=>np=C?斆=>>+=>܉>(6=v ?m=5<=V<k?\]?f?;r>{f+>:>Q?-=<=q0?h=)7>=Ö>[>9=O{>#>ܔ> =v>ٲ@?=E#y==|i>JGq>z>͠j>\>u>Q=>Y?d=r<ߑ=?=k8>F4>y?=;R|em?%9=?$=d?@=q>@e=>2=DR?C>R>p>>>0>B\>5?5N=`<`W=HS<(`?<<@ =P`>(p>ٞ>z ?Eq=|>=<™>z<!?+&'=X ?=*v>a=AY?h==Z=;=J=|H?uC='>>˫>2d>(>>!U>-#e>4)>>,>@e>e)>댊>_>Ne>Oz)>>Y>KSe>c)>/>>Ue>)>/>>Ue>"w?<=>q;%>go>>j.#>8<=1 ?go>>j.#>8<=1 ?95>jD>R`>+>Í5>>%> [>5>>$>[>5>{>%> [>e5>>(>[>n5>&>/>[>5@5>6>>>[>4>V>z[>b[>*(N?<=G|>Vk=>R< ?>:^>h>Lr>ű=M>NG=J>z=?.=N\>}p>W>$>v>uf>=#?Y=>Q)>j0=)?$S>#$=f>>5>m(?'?'>X=D>MG?J==)=-?rS>=8,%>C >>e]:=rf?VY >?5=j>Bv>g=k>ف>VaQ>-i=L!?Zu=>=ͺ>d=n)>>e>>d9=>?\=ҙ>3>=!>2>Z=>=_>ð=&>L ="5> zj=i>wt=L!>; <;v?c=HO%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>|?;;Nl>D??|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?uz?&z<;J>9)?Ī>t*?X|?;%fD?Ī>t*?@|?9.;9.;Nl>D?>J0?@|?9.;9.;Nl>D?c>?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?PDR?;h0>Nl>D?Ī>t*? ?f;>Nl>D? =.w?KN?[5=r=4?=>(]>?F>v?_};`D?-?w>"?;K>Nl>D?ݠ>2?cU?i>,'<% ?>w?i=|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?Dz?%<;y? >Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?;Q|?;1D?Ī>t*?}>4;]?Nl>D?I<>a1?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?eG=&s?m?==Nl>D?;~?m?==Nl>D?;~?8?=nx>Nl>D?;~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?;$~?1h?.:=.:=Nl>D?{I|? m% ?Ī>t*?8y?;"D?Ī>t*?}|? ; ;Nl>D?8Z>WI?^|? ;h;Nl>D?8Z>WI?Yf?|<,=q>G?zQ>K?DP?;5>Nl>D?8s=;p? k?  D?>?mn?$h=CX?YN>x?jb;/OD?B?t>Jy|?Ў;;Nl>D?>ױ?k?<,>~?i?q;%=Nl>D?>^?\?Ɏ=s=> ?-D=g?HM?8 ==,c>K*? ?J>%|?;;Nl>D?L?dL>4bm?Җ={;f5?2>?$>|?g;g;Nl>D?>?+?z?v<;E?5%>Ī>t*?ds?T/=;@B?u>Ī>t*? z?N<;E?>Ī>t*?|?;;Nl>D?Ī>t*?Gz?ς<;G?fp>Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?|?;;Nl>D?Ī>t*?N[~?3;Nl>D??Val =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ CAggGuGUAGCUuAAauAguAAAGCAUCUcGCUUACACCgAGAAGgggggggAUUagggggggAUauCcGUgCAAAUCgGauCaccuUGA (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))):>cmbuild --hand --enone Val-final-vert.cm ../Val-2nd-align.sto=[AFri Jun 26 17:14:01 2015  "#$%&'()*+,-./0123456789:;<=>?@ABCDEFGIJKLNOPSTUWX]cdghjlnoqrstuKY 47?47?Ju47?OǀOǀOǀOǀOǀOǰc>ty>uP>/u>tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Gln.cm0000644000543100007160000017240312573631164021412 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Gln STATES 289 NODES 76 CLEN 90 W 106 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:26 2015 COM [1] cmbuild --hand --enone Gln_model.cm aligntRNAdb-Gln.sto COM [2] cmcalibrate --seed 208 Gln_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 477239941 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.0631 0.71872 ECMLC 0.60245 -8.47402 1.85575 1600000 605160 0.001983 ECMGC 0.32498 -50.92250 -35.58657 1600000 58412 0.006848 ECMLI 0.54956 -9.22579 2.05459 1600000 590818 0.002031 ECMGI 0.34442 -45.98687 -31.72910 1600000 54295 0.007367 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 106 132 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 40 107 133 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 41 108 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - G - + MR 3 2 3 5 5 22 49 106 132 -13.126 -0.001 -12.941 -13.153 -14.045 -8.727 -10.497 1.998 -9.485 D 4 2 3 5 5 12 36 105 131 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 39 106 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 U A = = MP 6 5 3 10 6 22 48 105 131 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 7 5 3 10 6 14 38 103 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 38 103 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 35 101 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 39 105 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 39 104 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 A U = = MP 12 11 6 16 6 22 47 103 129 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.071 -10.294 3.933 -12.435 -13.590 -7.893 -10.336 -9.854 -3.005 -10.524 -1.540 -7.818 -11.599 -9.724 -8.892 ML 13 11 6 16 6 13 38 101 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 38 101 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 35 99 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 39 103 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 39 102 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 99 G C = = MP 18 17 6 22 6 20 45 101 127 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.984 -8.637 -14.191 -6.102 -13.630 -9.808 -7.938 -13.697 -10.004 3.968 -10.199 -1.661 -8.299 -10.272 -10.383 -13.224 ML 19 17 6 22 6 13 37 99 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 37 99 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 35 97 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 38 101 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 39 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 98 A U = = MP 24 23 6 28 6 18 43 99 125 -5.611 -14.017 -0.030 -12.794 -13.073 -13.468 -10.098 -4.218 -10.293 3.387 -12.433 -13.577 -7.890 -10.336 -9.854 1.765 -10.523 1.048 -7.816 -11.596 -9.721 -8.892 ML 25 23 6 28 6 13 37 97 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 37 97 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 35 95 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 40 98 124 -5.443 -5.706 -0.084 -7.361 -8.137 -7.797 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 38 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 97 A U = = MP 30 29 6 34 6 16 41 97 123 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -4.445 -10.294 3.605 -12.435 -13.589 -7.893 -1.583 -9.854 0.245 -10.524 -0.145 -7.817 -11.599 -9.723 0.437 ML 31 29 6 34 6 12 37 96 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 37 95 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 34 93 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 38 97 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 38 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 96 u a = = MP 36 35 6 40 6 14 39 95 121 -5.055 -14.017 -0.045 -12.794 -13.073 -13.468 -11.094 -11.366 -10.418 -7.594 -4.524 -10.567 -0.180 -9.686 -10.519 -7.560 -10.643 -3.079 2.848 -3.469 2.840 -1.040 ML 37 35 6 40 6 12 36 94 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 36 94 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 34 92 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 37 94 120 -5.935 -6.198 -0.579 -7.853 -1.770 -8.290 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 37 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 95 a u = = MP 42 41 6 46 4 12 37 93 119 -13.265 -13.472 -0.001 -11.886 1.079 -7.707 -0.687 1.980 -8.407 -9.283 -5.107 -8.455 1.379 -1.112 -0.383 1.440 1.182 -8.485 -1.482 -3.213 ML 43 41 6 46 4 11 36 93 119 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 36 92 118 -7.141 -6.170 -0.214 -3.098 1.821 -2.974 -2.547 -2.578 D 45 41 6 46 4 9 34 91 117 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 36 94 120 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 36 93 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 10 35 91 117 -14.190 -0.000 -12.844 -1.742 -6.822 -1.004 1.675 D 49 47 6 50 3 8 34 90 116 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 36 92 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - G - + - ML 51 50 3 53 2 9 34 90 116 -5.586 -0.030 -0.048 -7.920 1.570 -4.060 D 52 50 3 53 2 8 33 89 115 -8.445 -0.004 IL 53 53 3 53 2 9 35 90 116 -4.689 -0.057 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 33 89 115 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 15 56 82 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 15 56 82 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 37 64 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 13 35 G C = = MP 58 57 1 62 6 2 5 37 64 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 59 57 1 62 6 1 2 36 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 36 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 37 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 37 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 34 U A = = MP 64 63 6 68 6 2 5 35 62 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.105 -11.364 -10.427 -7.604 -8.783 -10.576 -4.496 -9.696 -10.527 -7.582 -10.651 -9.732 3.957 -10.945 -1.301 -9.311 ML 65 63 6 68 6 1 2 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 34 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 35 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 33 G C = = MP 70 69 6 74 6 2 5 33 60 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.800 -8.643 -13.425 -1.157 -13.539 -9.877 -7.936 -13.144 -9.996 3.945 -10.214 -2.924 -8.270 -10.316 -10.342 -12.250 ML 71 69 6 74 6 1 2 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 32 U G = = MP 76 75 6 80 4 2 4 31 58 -13.280 -13.487 -0.001 -11.901 -11.109 -11.390 -2.262 -7.627 -8.777 -10.571 -1.297 -9.693 -10.530 -7.599 -10.650 -9.793 0.701 -10.943 3.760 -2.377 ML 77 75 6 80 4 1 1 31 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 31 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 29 56 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 32 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 32 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - + - ML 82 81 6 84 3 1 3 29 56 -14.190 -0.000 -12.844 1.802 -8.094 -1.231 -3.591 D 83 81 6 84 3 0 0 28 54 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 2 31 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - + - ML 85 84 3 87 3 1 2 28 55 -14.190 -0.031 -5.582 1.157 -3.790 -0.478 -0.029 D 86 84 3 87 3 0 0 26 53 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 2 30 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - U - + - ML 88 87 3 90 3 1 1 28 54 -14.160 -0.449 -1.904 -1.026 -1.814 -1.736 1.548 D 89 87 3 90 3 0 0 25 51 -10.115 -5.628 -0.031 IL 90 90 3 90 3 1 2 29 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - + - ML 91 90 3 93 3 1 1 27 53 -0.726 -1.601 -3.927 0.219 -4.035 -1.669 1.299 D 92 90 3 93 3 0 0 25 51 -13.791 -0.005 -8.183 IL 93 93 3 93 3 1 1 26 52 -2.054 -0.399 -10.788 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - + - ML 94 93 3 96 3 1 1 25 51 -14.121 -0.000 -12.775 -3.813 -9.559 1.923 -2.881 D 95 93 3 96 3 0 0 24 50 -11.243 -0.030 -5.634 IL 96 96 3 96 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - + - ML 97 96 3 99 3 1 1 24 50 -14.190 -0.036 -5.333 -2.598 -3.507 1.905 -8.457 D 98 96 3 99 3 0 0 21 48 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - + - ML 100 99 3 102 3 1 1 23 49 -2.640 -0.253 -12.808 -1.091 -6.769 -1.054 1.604 D 101 99 3 102 3 0 0 14 40 -10.350 -0.056 -4.742 IL 102 102 3 102 3 1 1 24 50 -1.017 -0.986 -9.923 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.857 -7.790 -2.230 -2.656 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -0.837 -7.846 1.730 -3.089 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 37 54 A U = = MP 112 111 3 116 6 2 2 26 45 -5.364 -14.017 -0.036 -12.794 -13.073 -13.468 -8.578 -7.219 -8.443 3.000 -9.655 -9.179 -4.741 -9.046 -8.754 2.064 -1.664 1.454 -1.272 -8.401 -2.573 -3.059 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 25 44 -5.659 -5.921 -0.072 -7.577 -8.353 -8.013 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 53 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.918 -12.434 -13.590 -7.892 -10.336 -9.854 -2.617 -10.524 -0.511 -7.817 -11.599 -9.723 -8.892 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 40 52 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.910 -8.639 -13.845 -1.605 -13.592 -9.834 -7.936 -13.456 -10.001 3.968 -10.205 -6.552 -8.287 -10.289 -10.366 -12.766 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 41 51 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.713 -12.435 -13.590 -7.893 -10.336 -9.854 0.519 -10.524 0.521 -7.817 -11.599 -9.723 -8.892 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 50 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.132 -8.815 -10.300 3.072 -11.823 -3.514 -7.371 -4.176 -9.879 -2.486 -10.529 0.568 -3.289 -11.561 0.217 2.172 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -2.681 -1.100 -1.726 1.621 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.599 -9.066 -0.047 -8.982 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.445 -5.176 0.073 -2.332 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - A - + - ML 166 165 2 168 3 1 2 49 68 -14.190 -0.000 -12.844 1.780 -4.893 -2.038 -1.787 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - G - + - ML 169 168 3 171 2 1 1 48 67 -14.843 -0.000 0.615 -8.259 1.269 -4.175 D 170 168 3 171 2 0 0 47 66 -8.445 -0.004 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 57 74 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 58 73 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 59 72 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 60 71 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 61 70 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 62 69 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 63 68 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 64 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 65 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 66 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 67 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 29 47 -14.190 -0.022 -6.035 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 75 - G - + - ML 231 230 2 233 3 1 1 28 47 -14.168 -0.000 -12.822 -0.865 -8.741 1.774 -5.104 D 232 230 2 233 3 0 0 28 47 -9.693 -0.090 -4.084 IL 233 233 3 233 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 76 - a - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.576 -2.899 0.377 0.106 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 77 94 g u = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.126 -5.613 -1.726 1.281 -5.655 -6.488 -0.516 -3.349 -2.854 0.698 -3.140 2.642 -1.133 -3.351 -1.759 1.739 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 78 93 U A = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.101 -11.376 -10.423 -3.111 -8.775 -10.569 0.066 -9.689 -10.525 -7.579 -3.469 -9.766 3.690 -10.938 0.817 -3.835 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 79 92 A U = = MP 249 248 6 253 6 2 2 22 41 -6.070 -14.017 -0.022 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.760 -12.435 -13.590 -7.893 -10.336 -9.854 0.062 -10.524 0.470 -7.817 -11.599 -9.723 -8.892 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 22 40 -5.055 -5.318 -0.110 -6.973 -7.750 -7.410 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 91 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.849 -8.641 -13.599 -2.577 -13.564 -9.858 -7.936 -13.276 -9.998 3.952 -10.210 -1.566 -8.278 -10.304 -10.353 -12.460 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 90 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 83 - U - + - ML 267 266 6 269 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 84 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 85 - C - + - ML 273 272 3 275 3 1 1 13 32 -14.190 -0.000 -12.844 -9.274 1.929 -9.685 -2.400 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 86 - g - + - ML 276 275 3 278 3 1 1 12 30 -14.190 -0.000 -12.844 0.965 -4.040 0.989 -8.519 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 15 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - U - + - ML 282 281 3 284 3 1 1 9 27 -14.190 -0.000 -12.844 -1.001 -1.224 -0.518 1.247 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 89 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.872 -3.078 -1.474 1.700 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Gln LENG 90 MAXL 176 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:26 2015 COM [1] cmbuild --hand --enone Gln_model.cm aligntRNAdb-Gln.sto NSEQ 282 EFFN 3.954437 CKSUM 477239941 STATS LOCAL MSV -9.0284 0.71872 STATS LOCAL VITERBI -9.7419 0.71872 STATS LOCAL FORWARD -3.5792 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41803 1.68682 1.27275 1.22880 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 0.00000 * 1 3.76955 2.54259 3.60604 0.13798 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 2 0.18975 3.69124 2.15213 3.45282 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 3 2.90849 3.82212 0.10602 3.72336 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 4 0.79279 2.82156 0.87521 2.64323 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.04402 3.55130 4.24202 0.81262 0.58644 1.09861 0.40547 5 0.73624 2.15749 1.37943 1.87240 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 6 2.09190 1.44438 1.90083 0.71088 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.04399 3.55242 4.24202 0.81340 0.58581 1.09861 0.40547 7 1.34821 1.61290 1.34519 1.27120 9 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 8 1.84780 2.27712 2.06024 0.49035 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 9 1.41174 2.87379 0.49119 2.43155 11 G + - , 1.38629 1.38629 1.38629 1.38629 0.04399 3.55242 4.24202 0.81340 0.58581 1.09861 0.40547 10 3.02067 3.88208 0.09553 3.82902 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 11 3.75848 2.42832 3.57580 0.15024 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 12 2.66200 3.71462 0.12930 3.60747 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 13 2.64217 1.65551 2.53868 0.41729 16 U = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 14 0.31148 2.85347 2.08011 2.46417 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 15 0.84828 2.12179 1.67700 1.32766 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04399 4.24202 3.55242 1.46634 0.26236 1.09861 0.40547 16 1.66174 1.95584 2.15532 0.59261 19 U + - _ 1.38629 1.38629 1.38629 1.38629 0.23792 4.22764 1.62382 1.46634 0.26236 1.38452 0.28827 17 1.27304 1.99428 1.97685 0.80877 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.59137 0.94570 2.84692 0.33638 1.25299 0.12914 2.11070 18 2.60809 3.48994 0.17505 2.87519 24 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20911 4.20911 1.46634 0.26236 0.47939 0.96538 19 2.31811 3.11719 0.21769 2.93965 25 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04682 4.24202 3.46215 1.46634 0.26236 1.09861 0.40547 20 1.67849 2.21450 2.01226 0.56133 26 U + - _ 1.38629 1.38629 1.38629 1.38629 0.14941 2.08619 4.22489 0.77011 0.62169 0.65073 0.73745 21 0.27138 2.85882 2.40108 2.41111 31 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 22 1.75416 2.70137 0.39577 2.44561 32 G = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 23 3.77907 0.15772 3.54613 2.36196 33 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 24 0.18231 3.72828 2.18782 3.49135 34 A = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 25 3.94080 0.11853 3.70356 2.69253 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 26 1.76417 2.96638 0.36824 2.46242 36 G + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 27 1.24578 2.16081 0.79290 1.93432 37 g = - < 1.38629 1.38629 1.38629 1.38629 0.04682 3.46215 4.24202 0.75276 0.63689 1.09861 0.40547 28 0.22453 3.65294 1.95044 3.41181 39 A = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 29 2.77869 3.77895 0.11630 3.69574 40 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 30 0.47379 3.16701 1.26192 2.95421 41 A = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 31 1.27638 1.70076 1.39273 1.23784 42 u = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 32 1.94908 1.85950 2.25160 0.51648 43 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 33 3.22772 3.09160 3.76341 0.11460 44 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 34 3.22772 3.09160 3.76341 0.11460 45 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 35 3.22772 3.09160 3.76341 0.11460 46 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 36 3.32946 4.27903 0.07385 3.83859 47 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 37 0.43700 2.86876 1.52396 2.53309 48 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 38 0.61678 2.44984 1.46630 1.94328 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 39 1.75326 1.61417 1.44517 0.93642 50 u = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 40 3.16667 1.67186 2.96024 0.33107 51 U = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 41 3.87602 0.13856 3.62393 2.50129 52 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 42 3.61358 2.45287 3.44191 0.15666 53 U = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 43 2.19899 1.01121 1.91376 0.97344 54 u = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 44 0.37385 2.56475 2.24246 2.04960 55 A + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 45 1.05150 2.73016 0.72607 2.28696 56 g + - , 1.38629 1.38629 1.38629 1.38629 1.24628 4.24202 0.35946 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 47 1.80322 1.30587 1.07721 1.49723 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 48 1.80099 1.30655 1.07804 1.49678 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 49 1.80002 1.30685 1.07840 1.49658 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 50 1.79967 1.30696 1.07853 1.49651 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 51 1.79961 1.30698 1.07856 1.49650 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 52 1.79969 1.30695 1.07852 1.49652 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 53 1.13112 1.65303 1.51838 1.32128 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 54 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 55 1.13112 1.65303 1.51838 1.32128 66 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 56 1.13112 1.65303 1.51838 1.32128 67 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 57 1.73092 1.21992 1.16186 1.53841 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 58 1.73079 1.21998 1.16191 1.53837 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 59 1.73074 1.22000 1.16193 1.53835 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 60 1.73082 1.21996 1.16190 1.53838 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 61 1.73116 1.21982 1.16178 1.53848 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 62 1.73194 1.21949 1.16149 1.53871 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 63 1.73350 1.21882 1.16092 1.53917 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.05538 2.92103 64 1.84264 3.18112 0.30460 2.77031 75 G + - , 1.38629 1.38629 1.38629 1.38629 0.02949 4.23156 4.23156 1.46634 0.26236 0.77033 0.62150 65 1.09741 2.04934 1.35979 1.27036 76 a + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 66 1.54307 1.65224 1.14146 1.28988 77 g = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 67 2.42760 1.49087 2.21349 0.54947 78 U = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 68 0.41774 3.25607 1.36732 3.03373 79 A = - < 1.38629 1.38629 1.38629 1.38629 0.03995 3.69770 4.24202 0.92077 0.50785 1.09861 0.40547 69 2.78585 3.75175 0.11800 3.64391 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 70 3.00956 3.86572 0.09704 3.80684 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 71 3.22772 3.09160 3.76341 0.11460 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 72 3.22772 3.09160 3.76341 0.11460 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 73 3.16811 0.17561 3.75031 2.34901 85 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 74 0.84724 2.58598 0.93443 2.27042 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 75 0.07833 3.88184 3.54907 3.65073 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 76 1.53506 1.81403 1.77249 0.79484 88 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 77 1.89850 2.17791 2.20978 0.46648 89 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 78 3.96711 0.11723 3.71678 2.69743 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 79 3.82171 0.15039 3.59167 2.40587 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 80 3.24014 1.82215 3.04585 0.28554 92 U = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 81 0.70891 2.40582 1.18358 2.19422 93 a = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 82 1.66907 1.57037 1.42435 1.01350 94 u = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 83 1.28233 1.79581 1.32801 1.23233 95 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 84 1.17593 2.07477 0.90617 1.82132 96 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 85 2.27506 1.59088 2.01563 0.57941 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 86 2.87688 1.16234 2.62369 0.58268 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 87 3.90275 0.13569 3.67227 2.50987 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 88 3.66694 2.47049 3.49279 0.15142 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 89 0.15508 3.82028 2.38062 3.53237 101 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 90 3.32946 4.27903 0.07385 3.83859 102 G + - : 1.38629 1.38629 1.38629 1.38629 0.01470 4.22753 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Gln.cm0000644000543100007160000017244712573631650021136 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Gln-2nd-align STATES 289 NODES 76 CLEN 90 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:51 2015 COM [1] cmbuild --hand --enone Gln-final-vert.cm ../Gln-2nd-align.sto COM [2] cmcalibrate --seed 208 Gln-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 2451779061 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.2526 0.71865 ECMLC 0.65347 -6.79758 2.40311 1600000 490125 0.002448 ECMGC 0.26691 -54.02545 -36.67020 1600000 41102 0.009732 ECMLI 0.58010 -7.48428 2.79958 1600000 467761 0.002565 ECMGI 0.27544 -50.11687 -33.39358 1600000 40041 0.009990 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 122 -15.013 -16.259 -0.000 -12.712 IL 1 1 2 1 4 21 43 103 124 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 44 103 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 104 - G - + MR 3 2 3 5 5 29 53 101 122 -15.062 -0.000 -14.877 -15.089 -15.981 0.923 -10.597 1.001 -3.294 D 4 2 3 5 5 19 39 100 121 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 21 43 102 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 103 U A = = MP 6 5 3 10 6 29 52 100 121 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.941 -12.850 -12.355 -1.039 -10.820 -12.609 -6.531 -11.671 -12.405 -9.196 -12.579 -10.775 3.936 -12.923 -2.345 -11.232 ML 7 5 3 10 6 20 41 99 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 41 99 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 17 37 96 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 21 42 100 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 21 42 100 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 102 A U = = MP 12 11 6 16 6 29 50 98 119 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.038 -2.789 -12.233 3.911 -14.375 -15.530 -9.832 -12.276 -11.793 -0.903 -12.463 -1.892 -9.757 -13.539 -11.663 -10.832 ML 13 11 6 16 6 20 40 97 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 20 40 97 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 17 37 94 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 21 42 98 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 21 42 98 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 101 G C = = MP 18 17 6 22 6 27 48 96 117 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.240 -10.670 -12.498 0.625 -14.524 -13.784 -9.832 -12.532 -11.815 3.812 -2.364 -2.873 -9.826 -13.179 -11.755 -3.683 ML 19 17 6 22 6 20 40 95 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 20 40 95 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 37 92 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 20 41 96 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 41 96 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 100 A U = = MP 24 23 6 28 6 26 46 94 115 -5.859 -15.935 -0.025 -14.712 -14.991 -15.387 -12.038 -5.924 -12.233 3.151 -14.374 -15.528 -9.832 -3.139 -3.562 0.983 -12.463 2.238 -9.757 -13.538 -11.663 -2.269 ML 25 23 6 28 6 20 40 93 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 40 93 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 17 37 90 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 23 44 93 114 -6.972 -7.235 -0.028 -8.890 -9.667 -9.327 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 41 94 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 99 A U = = MP 30 29 6 34 6 24 44 92 113 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.949 -3.004 -12.111 3.658 -14.110 -14.777 -3.551 -2.997 -11.738 0.429 -4.929 -0.312 -3.072 -13.187 -11.358 -0.442 ML 31 29 6 34 6 19 40 91 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 39 91 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 17 37 88 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 20 40 92 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 20 41 92 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 98 A U = = MP 36 35 6 40 6 22 42 90 111 -15.996 -15.935 -0.019 -6.228 -14.991 -15.387 -8.759 -4.653 -1.550 3.063 -6.322 -9.717 -0.929 -9.016 -8.927 0.208 -9.464 -0.236 1.225 -6.523 0.984 -1.380 ML 37 35 6 40 6 19 39 89 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 18 38 89 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 16 36 87 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 20 40 90 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 40 90 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 97 g c = = MP 42 41 6 46 4 20 40 88 109 -15.199 -15.407 -0.000 -13.821 -0.632 -8.596 -2.453 2.167 -10.909 -10.374 -5.975 -10.465 -0.834 2.482 -1.627 1.657 -0.433 -9.632 -2.791 -2.723 ML 43 41 6 46 4 19 39 87 108 -7.812 -7.994 -0.026 -6.724 -1.503 -3.535 1.703 -1.713 MR 44 41 6 46 4 17 37 88 109 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 16 36 87 108 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 19 39 90 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 39 89 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 18 38 86 107 -16.128 -0.000 -14.782 -3.024 -8.786 -2.636 1.893 D 49 47 6 50 3 16 36 85 106 -6.174 -1.687 -0.566 IL 50 50 3 50 3 18 38 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 17 37 85 106 -6.291 -0.019 0.591 -4.810 1.271 -4.511 D 52 50 3 53 2 16 36 84 105 -8.445 -0.004 IL 53 53 3 53 2 17 37 85 106 -5.807 -0.026 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 16 36 84 105 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 2 15 51 72 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 2 15 51 72 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 33 53 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 12 31 G C = = MP 58 57 1 62 6 2 5 33 53 -15.996 -15.935 -0.001 -10.371 -14.991 -15.387 -11.829 -10.349 -11.937 0.069 -13.590 -13.070 -1.764 -12.171 -11.598 3.771 -2.365 -0.601 -8.917 -12.327 -10.746 -2.797 ML 59 57 1 62 6 1 2 31 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 31 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 32 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 32 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 30 U A = = MP 64 63 6 68 6 2 5 31 51 -15.995 -15.934 -0.000 -14.711 -14.990 -15.385 -13.047 -13.329 -12.364 -2.806 -5.145 -12.509 -2.136 -11.630 -12.468 -9.537 -12.588 -11.733 3.917 -12.881 -1.018 -11.270 ML 65 63 6 68 6 1 2 29 50 -7.342 -7.688 -0.474 -2.096 -7.537 -5.067 -0.604 -0.778 -1.271 1.229 MR 66 63 6 68 6 1 2 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 27 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 30 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 29 G C = = MP 70 69 6 74 6 2 5 29 49 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.845 -5.248 -13.388 2.165 -14.950 -12.413 -9.845 -13.373 -11.867 3.517 -12.248 -4.691 -10.010 -12.601 -12.005 -12.020 ML 71 69 6 74 6 1 2 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 26 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 28 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 28 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 28 U G = = MP 76 75 6 80 4 2 5 27 47 -15.219 -15.426 -0.000 -13.840 -13.047 -13.322 -3.945 -2.574 -10.717 -12.511 -2.070 -11.632 -12.468 -9.533 -12.589 -11.716 0.312 -12.883 3.828 -3.658 ML 77 75 6 80 4 1 2 27 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 46 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 28 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 27 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 3 25 45 -16.128 -0.000 -14.782 1.932 -10.959 -2.758 -4.818 D 83 81 6 84 3 0 0 23 44 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 2 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - g - + - ML 85 84 3 87 3 1 2 24 44 -16.128 -0.020 -6.204 0.593 -4.206 0.995 -1.172 D 86 84 3 87 3 0 0 22 43 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 2 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - + - ML 88 87 3 90 3 1 1 23 43 -16.109 -1.543 -0.607 -0.265 -1.835 -1.402 1.327 D 89 87 3 90 3 0 0 18 39 -11.379 -6.892 -0.013 IL 90 90 3 90 3 1 2 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - + - ML 91 90 3 93 3 1 1 23 44 -1.070 -0.933 -13.220 0.212 -2.242 -1.099 1.113 D 92 90 3 93 3 0 0 11 30 -16.952 -0.001 -11.343 IL 93 93 3 93 3 1 1 23 43 -1.278 -0.768 -11.664 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - + - ML 94 93 3 96 3 1 1 11 29 -16.128 -0.000 -14.782 -3.662 -12.143 1.949 -4.034 D 95 93 3 96 3 0 0 15 34 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - + - ML 97 96 3 99 3 1 1 9 28 -16.128 -0.062 -4.567 -2.936 -12.424 1.952 -11.401 D 98 96 3 99 3 0 0 14 33 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - A - + - ML 100 99 3 102 3 1 1 7 26 -16.066 -0.000 -14.720 1.146 -5.030 -0.711 0.197 D 101 99 3 102 3 0 0 9 27 -12.992 -0.009 -7.383 IL 102 102 3 102 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.854 -5.635 -3.519 -1.849 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - g - + - ML 109 108 2 111 5 1 1 26 45 -6.387 -0.017 -14.877 -15.089 -15.981 -0.541 -0.937 0.788 0.089 D 110 108 2 111 5 0 0 25 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.637 -0.046 -7.315 -9.148 -8.421 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 54 A U = = MP 112 111 3 116 6 2 2 25 44 -6.320 -15.935 -0.018 -14.712 -14.991 -15.387 -4.244 -8.515 -5.035 3.082 -5.656 -10.138 -0.773 -10.075 -9.823 1.697 -3.947 0.770 0.083 -4.389 -2.463 -0.895 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 24 43 -6.537 -6.800 -0.039 -8.455 -9.232 -8.892 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 53 A U = = MP 118 117 6 122 6 2 2 23 42 -15.996 -6.391 -0.017 -14.712 -14.991 -15.387 -12.038 -3.585 -12.233 3.605 -14.374 -15.529 -9.832 -4.186 -11.793 1.192 -12.463 0.415 -9.757 -13.538 -11.663 -3.722 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 22 41 -5.640 -0.045 -9.152 -7.319 -8.425 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 51 G C = = MP 124 123 6 128 6 2 2 21 40 -6.334 -15.935 -0.018 -14.712 -14.991 -15.387 -12.182 -10.678 -12.421 0.863 -14.483 -14.095 -9.834 -12.457 -11.809 3.800 -12.412 -2.799 -9.808 -13.271 -11.731 -3.202 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 21 39 -6.524 -6.787 -0.039 -8.442 -9.218 -8.878 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 50 A U = = MP 130 129 6 134 6 2 2 19 37 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.038 -6.674 -12.233 3.717 -14.373 -15.528 -3.028 -4.629 -11.793 0.491 -12.463 0.347 -9.756 -13.538 -11.662 -10.832 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 49 G C = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -9.965 -8.603 -6.338 1.965 -10.914 -5.176 -4.476 -5.346 -10.222 3.152 -3.934 0.310 -3.634 -9.637 -1.538 0.448 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - U - + - ML 142 141 6 144 3 1 1 14 32 -16.128 -0.000 -14.782 -4.385 -2.134 -3.929 1.871 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -12.630 -4.537 -13.761 1.984 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - G - * - ML 154 153 3 156 3 1 1 8 27 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - A - + - ML 157 156 3 159 3 1 1 6 11 -5.544 -0.031 -14.782 1.749 -5.713 -0.693 -10.665 D 158 156 3 159 3 0 0 5 10 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 6 11 -5.374 -0.041 -8.074 0.000 0.000 0.000 0.000 [ MATL 41 ] 48 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.014 -3.334 -0.609 1.161 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 48 67 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 5 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - a - + - ML 166 165 2 168 3 1 4 48 67 -16.128 -0.000 -14.782 0.946 -0.944 -0.464 -0.272 D 167 165 2 168 3 0 2 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - a - + - ML 169 168 3 171 2 1 3 47 66 -16.784 -0.000 0.834 -4.356 0.826 -1.338 D 170 168 3 171 2 0 2 46 65 -8.445 -0.004 IL 171 171 3 171 2 1 3 48 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 57 74 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 58 73 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 59 72 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 60 71 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 61 70 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 62 69 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 63 68 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.432 -15.113 -13.129 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 64 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.545 -13.058 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 65 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.545 -13.058 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 66 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.545 -13.058 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 67 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 27 45 -16.128 -0.002 -9.331 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 75 - G - + - ML 231 230 2 233 3 1 4 27 45 -5.936 -0.024 -14.780 -1.521 -11.285 1.845 -4.108 D 232 230 2 233 3 0 0 26 44 -8.503 -0.213 -2.895 IL 233 233 3 233 3 1 1 27 45 -5.009 -0.053 -7.710 0.000 0.000 0.000 0.000 [ MATL 62 ] 77 - u - + - ML 234 233 3 236 5 1 4 26 44 -15.062 -0.000 -14.877 -15.089 -15.981 -0.519 -1.601 0.536 0.607 D 235 233 3 236 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 78 96 a u = = MP 237 236 3 241 6 2 4 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -4.145 -7.409 -2.033 2.482 -5.914 -3.518 -0.914 -3.741 -3.476 0.990 -4.919 1.872 -1.027 -4.441 -3.082 1.572 ML 238 236 3 241 6 1 1 25 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 79 95 u a = = MP 243 242 6 247 6 2 4 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -5.850 -5.418 -8.128 1.032 -7.951 -8.979 0.971 -4.250 -8.172 0.137 -2.196 -4.002 2.643 -1.901 0.149 1.528 ML 244 242 6 247 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 80 94 A U = = MP 249 248 6 253 6 2 3 21 39 -15.996 -15.935 -0.023 -14.712 -6.005 -15.387 -12.037 -10.697 -12.232 3.023 -14.371 -15.517 -9.828 -2.000 -11.793 2.686 -12.462 0.115 -9.754 -13.534 -11.659 -3.315 ML 250 248 6 253 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 93 G C = = MP 255 254 6 259 6 2 2 18 37 -15.973 -15.913 -0.032 -14.689 -14.969 -5.528 -13.935 -10.529 -16.410 -0.746 -15.552 -3.793 -9.833 -15.799 -11.900 3.925 -12.089 -2.806 -10.201 -12.154 -12.290 -15.586 ML 256 254 6 259 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 22 40 -11.464 -10.193 -6.102 -10.171 -0.029 -8.385 -5.603 1.973 -6.073 -4.711 D 258 254 6 259 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 92 G C = = MP 261 260 6 265 4 2 2 16 35 -15.164 -15.371 -0.000 -13.786 -13.901 -10.498 -16.362 -7.985 -15.517 -11.652 -9.800 -15.757 -11.869 3.999 -12.058 -8.435 -10.169 -12.123 -12.256 -15.531 ML 262 260 6 265 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 21 39 -0.056 -8.511 -6.378 -5.439 -5.603 1.973 -6.073 -4.711 D 264 260 6 265 4 0 0 17 36 -9.925 -9.606 -0.028 -5.876 IL 265 265 5 265 4 1 1 20 38 -6.152 -6.836 -0.036 -9.321 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 84 - U - + - ML 267 266 6 269 3 1 1 14 32 -16.128 -0.000 -14.782 -9.383 -5.589 -5.063 1.981 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 85 - U - + - ML 270 269 3 272 3 1 1 13 31 -16.128 -0.000 -14.782 -9.274 -5.479 -3.954 1.968 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 86 - C - + - ML 273 272 3 275 3 1 1 12 30 -16.128 -0.000 -14.782 -11.566 1.977 -12.027 -4.000 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 87 - G - + - ML 276 275 3 278 3 1 1 10 29 -16.128 -0.000 -14.782 0.695 -4.777 1.229 -10.667 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 88 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.128 -0.000 -14.782 1.971 -11.425 -4.648 -4.703 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 89 - g - + - ML 282 281 3 284 3 1 1 6 12 -6.361 -0.018 -14.782 -0.183 -1.734 0.541 0.447 D 283 281 3 284 3 0 0 5 11 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 7 12 -4.627 -0.069 -7.327 0.000 0.000 0.000 0.000 [ MATL 74 ] 91 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.802 -0.585 -2.045 1.559 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Gln-2nd-align LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:51 2015 COM [1] cmbuild --hand --enone Gln-final-vert.cm ../Gln-2nd-align.sto NSEQ 1086 EFFN 7.825676 CKSUM 2451779061 STATS LOCAL MSV -8.9307 0.71865 STATS LOCAL VITERBI -9.5998 0.71865 STATS LOCAL FORWARD -4.0124 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41599 1.72917 1.29294 1.18607 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 0.00000 * 1 3.56921 2.87545 4.07139 0.10716 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 2 0.12082 4.58752 2.41662 4.23986 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 3 1.84798 2.94474 0.32040 2.74931 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 4 0.87176 2.82103 0.80152 2.60920 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03381 3.75454 4.62169 0.69816 0.68816 1.09861 0.40547 5 0.64739 2.45124 1.30286 2.13156 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 6 1.12918 1.74949 1.55779 1.23018 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 7 1.35268 1.96667 0.90090 1.63308 8 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 8 2.72251 2.99004 2.97095 0.18302 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 9 1.04187 3.07245 0.62394 2.73231 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.03014 3.91954 4.62169 0.80471 0.59279 1.09861 0.40547 10 1.89323 2.67327 0.34911 2.58932 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 11 4.01103 2.65799 4.13230 0.11009 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 12 1.46627 3.50799 0.35110 3.34256 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 13 3.46173 2.22797 3.76525 0.17708 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 14 0.10699 3.82334 2.98636 3.53581 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 15 1.08254 2.56498 0.86822 1.80394 17 g + - _ 1.38629 1.38629 1.38629 1.38629 0.03076 4.62169 3.88938 1.46634 0.26236 1.09861 0.40547 16 1.43959 2.05364 2.05285 0.68055 18 U + - _ 1.38629 1.38629 1.38629 1.38629 0.76325 4.61101 0.64643 1.46634 0.26236 1.40606 0.28118 17 1.25260 1.86881 1.84861 0.91012 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.36261 1.25989 3.88953 0.59856 0.79762 0.03652 3.32823 18 3.21074 4.36537 0.08275 3.63518 24 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 19 3.16114 4.63581 0.06923 4.21219 25 G + - _ 1.38629 1.38629 1.38629 1.38629 0.05420 4.62169 3.14848 1.46634 0.26236 1.09861 0.40547 20 0.78724 2.36933 1.78196 1.26214 26 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02056 4.58805 4.58805 1.46634 0.26236 0.37733 1.15738 21 0.19971 3.13850 2.94370 2.46497 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 22 2.15512 3.91800 0.19045 3.27957 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 23 3.57272 0.38652 3.31685 1.36165 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.02045 4.62169 4.56570 1.46634 0.26236 1.09861 0.40547 24 0.14115 4.27191 2.35094 3.79822 30 A = - > 1.38629 1.38629 1.38629 1.38629 0.01988 4.62112 4.62112 1.46634 0.26236 1.06164 0.42448 25 2.90164 0.43520 2.43625 1.55852 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 26 1.46095 1.85340 1.09848 1.28048 32 g + - , 1.38629 1.38629 1.38629 1.38629 0.02946 3.95316 4.62169 0.82820 0.57418 1.09861 0.40547 27 1.10883 2.04691 1.01817 1.71666 34 g = - < 1.38629 1.38629 1.38629 1.38629 0.02998 3.92711 4.62169 0.80994 0.58858 1.09861 0.40547 28 0.50847 3.27965 1.15637 3.07228 36 A = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 29 1.81605 3.13234 0.30344 2.89246 37 G = - < 1.38629 1.38629 1.38629 1.38629 0.02988 3.93218 4.62169 0.81346 0.58577 1.09861 0.40547 30 0.35359 3.48269 1.43709 3.52366 39 A = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 31 1.48969 2.61279 0.55531 2.06094 40 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 32 2.89550 2.49391 3.26540 0.19363 41 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 33 3.72707 3.31351 4.25163 0.07763 42 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 34 4.08071 3.84022 4.63149 0.04932 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 35 4.08071 3.84022 4.63149 0.04932 44 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 36 4.09910 5.12925 0.03301 4.60882 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 37 0.25241 3.45030 1.86032 3.33210 46 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03717 3.62496 4.62169 0.62381 0.76765 1.09861 0.40547 38 1.31013 2.24045 1.76798 0.79158 48 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 39 2.71946 0.67726 2.32663 1.11334 49 C = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 40 3.72935 1.89097 3.37281 0.23474 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 41 3.21873 0.35298 2.93678 1.58783 51 C = - > 1.38629 1.38629 1.38629 1.38629 0.02949 3.95175 4.62169 0.82720 0.57496 1.09861 0.40547 42 3.38082 1.45641 3.14102 0.37154 53 U = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 43 2.00369 1.22799 1.82919 0.88737 54 u = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 44 0.91112 1.83563 1.69174 1.36958 55 a + - , 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 45 0.94306 2.57022 0.98157 1.83682 56 a + - , 1.38629 1.38629 1.38629 1.38629 1.62595 4.62169 0.23138 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 47 1.80295 1.30595 1.07731 1.49717 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 48 1.80056 1.30668 1.07820 1.49669 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 49 1.79948 1.30701 1.07860 1.49647 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 50 1.79906 1.30715 1.07876 1.49639 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 51 1.79894 1.30718 1.07880 1.49637 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 52 1.79898 1.30717 1.07879 1.49637 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 53 1.13112 1.65303 1.51838 1.32128 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 54 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 55 1.13112 1.65303 1.51838 1.32128 66 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 56 1.13112 1.65303 1.51838 1.32128 67 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 57 1.73025 1.22021 1.16211 1.53821 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 58 1.73017 1.22024 1.16214 1.53819 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 59 1.73018 1.22024 1.16213 1.53819 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 60 1.73034 1.22017 1.16208 1.53824 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 61 1.73077 1.21999 1.16192 1.53836 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 62 1.73171 1.21959 1.16158 1.53864 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 63 1.73350 1.21882 1.16092 1.53917 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02599 3.66288 64 2.30920 3.78052 0.17614 3.23526 75 G + - , 1.38629 1.38629 1.38629 1.38629 0.03305 3.78724 4.62049 0.71891 0.66803 1.02389 0.44503 65 1.44514 1.99755 1.24924 1.07325 77 u + - , 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 66 1.31257 1.76917 1.22614 1.32060 78 g = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 67 1.65118 1.55443 1.70389 0.87974 79 u = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 68 1.01781 2.73255 0.68694 2.65289 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.03245 4.62169 3.81255 1.46634 0.26236 1.09861 0.40547 69 2.89956 4.04367 0.09343 4.09736 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.03764 4.60935 3.61263 1.46634 0.26236 0.63683 0.75282 70 3.57754 4.59469 0.04965 4.56681 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02021 4.60473 4.60473 1.46634 0.26236 0.55283 0.85641 71 3.29438 3.12790 3.62295 0.11385 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 72 3.21333 3.06502 3.40250 0.12802 85 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 73 4.25130 0.06103 4.69082 3.33025 86 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 74 0.94635 3.19967 0.65181 2.99638 87 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 75 0.06625 4.13197 3.65351 3.80999 88 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 76 1.34887 2.02671 1.24215 1.13963 89 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02965 3.94370 4.62169 0.82152 0.57939 1.09861 0.40547 77 2.25619 1.76706 2.49535 0.44325 91 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03717 4.62169 3.62496 1.46634 0.26236 1.09861 0.40547 78 4.55144 0.06445 4.43610 3.21821 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.02021 4.60473 4.60473 1.46634 0.26236 0.55283 0.85641 79 4.14880 0.11500 3.98345 2.60059 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 80 2.95837 0.82728 2.66227 0.81855 94 u = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 81 1.23469 1.84295 1.28952 1.28981 95 a = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 82 1.77128 1.62470 1.55305 0.86438 96 u = - > 1.38629 1.38629 1.38629 1.38629 0.03063 4.62169 3.89568 1.46634 0.26236 1.09861 0.40547 83 1.72363 1.21286 1.68414 1.08284 97 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02008 4.61114 4.61114 1.46634 0.26236 0.67685 0.70971 84 1.58301 1.77359 1.35769 1.00058 98 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 85 2.54332 1.49419 2.29037 0.51796 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 86 2.90013 1.39069 2.69291 0.46458 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 87 3.05373 0.38006 2.66577 1.61219 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 88 4.43923 2.73307 4.37546 0.09366 102 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 89 0.12554 4.27630 2.63451 3.43184 103 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 90 0.82690 3.14336 0.81392 2.57251 104 g + - : 1.38629 1.38629 1.38629 1.38629 0.00998 4.61180 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch-iso.i1m0000644000543100007160000341540613072025446020257 0ustar pchanlowelab=H **+++,,,---...///000000111111222222333333444444555666777888999:::;;;<  !!!!!!"""###$$$%%%&&&'''((()                                               """""#((((()...../222555|88;;;>>>AAADDDGGGLLLLLMRRRRRSXXXXXY^^^^^_dddddehhhkkknnnqqqtttwwwzzz}~7 "#####())))).///222556888;;;>>>AAADDDGGGGGLMMMMMRSSSSSXYYYYY^_____deeehhhkkknnnqqqtttwwwzz6|}~~~~} $*036|}~79<?BEHNTZ`filorux{)*1%)0'&#((.&&"((,&&"''*&%"''(%%!&&&$#!%%$#"!$#"!"! ! 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ٗ=8>c=Γ>>F>&,>\>>r>fs=>E>`.>= ?DA>H8,>o=>}Ry=w>b=?=<"d?_Љ>4V>7jM>9>_Љ>4V>7jM>9>_Љ>4V>7jM>9>sB?rP=qH=ߘ=>Wt>7=Aك>>p->o"?F{>/>>b>im=ZJ>S> >M>>8="> >^>pNv=ή'>b =<>\Yhd>o>=?.>4>qAM=S=no?U<<ϰ=\?֦>r)N>F>ED>">$=C?==>M`=u?P]R>;>)lk>%=M?6=T6=f< j?S%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>D??D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?v?m<*TH?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*??v>*T< ?>Ī>t*?D?Ī>t*?D?Ī>t*?;l?/}=*T</?m>Ī>t*?D?Ī>t*?w?U<*T<>د"?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?|e?*TD?Ī>t*?gx?fD?F?d>D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?>?/z>*T< X<x?Ī>t*?D?Ī>t*?D?Ī>t*?|e?*TD?Ī>t*?gx?fD?=nc?gx?fD?=nc?gx?fD?F?d>D?Ī>t*?D?Ī>t*?t?vw<<ü>! ?Ī>t*?Sy?b|UD?b>?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?Ҽp??=*T<44>R?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?w?;<*T^"?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?D?Ī>t*?#r?&>A>+?? arch-Alaarch-Ala-r2-033017 GGGCCGGUAGcucAGcGGaAGagCGCcgcCuUuuuAaGgcgGAGGuCcCGGGUUCAAAUCCCGgCCGGUCCA (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Ala-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Ala-r2-033017.sto@HFri Mar 31 11:14:26 2017  !"#$%&'()^_`abcdexz{|}~ o8?ˡ8?78?OǀOǀOǀOǀOǀOgV>(>JĠ>C[>@K --...///000111222333333444444555555666666777777888999:::;;;<<<===>>>?  !!!!!!""""""######$$$$$$%%%&&&'''((()))***+++,                                                  """""#((((()...../222555|88;;;>>>AAADDDGGGLLLLLMRRRRRSXXXXXY^^^^^_dddddehhhkkknnnqqqtttwwwzzz}~7 "#####())))).///222556888;;;>>>AAADDDGGGGGLMMMMMRSSSSSXYYYYY^_____deeehhhkkknnnqqqtttwwwzz6|}~~~~} $*036|}~79<?BEHNTZ`filorux{,.7(,6**'++4**'++2**'.+0*)&**.))&**,)(&))**'&))(&('&'&?AB@=@?=<7>>=;:5<<;984::9873887652665531543520341020/1/JJJ1IIpEDEDCECBCB@@<AA@>>:??><;8==<:96;;:855@(&$'%"&$!+        y{~}y~|{w}}|zyv{{zwutTRPSQORPMX"&!% $qq--..,.-+..,--)--,-,'--,.-%(,#'+"&*! ) (#'"&$_`_\_^[[U]]\YYS[[ZXVRYYXVTQWWVTQPVUTMTSJSREQQ=PP-NOw /87?W9Q>9M=c'?*>>>>>ˆ>*S.?#od=>>>>B9)8Z?X`@8 &87̛=.ڞ<Y?\=̒<?5>@=yA>[@>&}5?F<p=t<>>>>V7%7?aW8c1888ξ6-p835NX;$578Є5\7P}?"7^+}98V7Κ7_^+6=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>V7%7?aW8c188I8 >9h8W=78L`8>=O8C~8I?]U8L>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>4;e7}?7K:w_188; 8n;/>8|=:88ڑ>`}8lÖ8Z ?~8\=G;o8:7. ;=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?+>>>[@>&}5?F<p=t<>>>>7$7?W8188$+7 7I778MGW8+~x7r?W7z70>=k737U;H?7;8<";R ?ğ>Ja;x#=7Y>>>x><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>V7%7?aW8c188is8z%8ʾ8o~=C9B8I?8SL8DGR>A5[8{Nw: @=y89g=;=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>ݰ7p7 z?<[1888MCv; 8!'=9x8Ή6?^8jԜ8B=[8;=i8z8<l>9=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>(d88(?8!78W8|6[=Q67J;67Ug?ͤ7D;R-?4>KD>;F`> >V,=q=W=U>2? 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'=5b<>,?g^x?<{H7>>>>?qw? 8I`7?>>>> arch-Argarch-Arg-r2-033017 GGGCCCGUAGCucAGCCUGGAUAgaGCGgCGGCCUuguGAGCCGuAGGUCCcGGGUUCAAAUCCCgGCGGGCCCG  !"#$%&'()*+`abdefgh?Fri Mar 31 11:43:18 2017cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Arg-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Arg-r2-033017.sto cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Arg-r2-033017.cmL=L=Hz>Hz>V瞯<77ѶDDP>>>>[8?u7O?ЛTHiAjp(^emS?cz(?ɋG![=o@jVn|?q?4hb?IKDioI@j' T8T]?}"O? 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Q>XK?nw?<D?i-?,>w?&<&D?Ī>t*?w?&<&D?Ī>t*?·r?&D?Ī>t*?>w?<D?A ?+|>w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?C?_>&<t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?p?&D?Ī>t*?Kw?ȅ<ȅD?!H?o>ڋk?3=&< %?W>Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?DWw?z<&<>>?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?w?&<&D?Ī>t*?3T?_>&Y-?Ī>t*?{?@<Nl>D?? arch-Gluarch-Glu-r2-033017 GCUCCGGUgGUGUAGcCCGGCCAAgCAUucgGGCCUuuuGAGCCcguGACccGGGUUCAAAUCCCgGCCGGaGCA (((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))):cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Glu-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Glu-r2-033017.stoSYW@Fri Mar 31 11:31:33 2017  !"#$%&'(`abcdefghjklmnopqsvwxyz{|}~0zqio $ 8?7$ 8?/C$ 8?OǀOǀOǀOǀOǀO#`>>>G\>?J ,,---...///000111222222333333444444555555666666777888999:::;;;<<<===>  !!!!!!""""""######$$$%%%&&&'''((()))***+                                                 """""#((((()...../222555|88;;;>>>AAADDDGGGLLLLLMRRRRRSXXXXXY^^^^^_dddddehhhkkknnnqqqtttwwwzzz}~7 "#####())))).///222556888;;;>>>AAADDDGGGGGLMMMMMRSSSSSXYYYYY^_____deeehhhkkknnnqqqtttwwwzz6|}~~~~} $*036|}~79<?BEHNTZ`filorux{*,0'1/()%**1(*%)*/()$))-'($()+''$(()'&$'''&$$&&%#&$#%#oqqplqnkiemmljedkkjhdbiihfcaggfdb`eedca`ccba__bb`^a_^`^*+*22F$#     &&$$!%%$"" ##" !! !          z/26/.5-,.,,,*,,*++)+*(+*)*)&**)&)$*)(+*!%) $(#'"&!% $==<<9==;::7;;9886997776885474363253121/20.1/*/$        }|8A7?ɛ9Q>9M=c'?*>>>>>ˆ>*S.?#od=>>>>tj>3?̊8o8%8|a?Wk9s=V́9̒<?5>@=yA>K*?>> R[8XC9I8>>>>O78Uw?8 =0B87 @8*;6L=V76m`8t~ 9|g6l8 o?7F 9`%8Q7c/7o6=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>8W 8?L8!88H87˨U7 7*59\87E^?S*87 p=67%8`A: 7a;5[8=W<X)<8y>>;KD>;F`> >#9N:q[>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>?8T 8E}?}I8? 0n6U8 <6n 8J?79_r8Z7e7b7=W<X)<8y>>;KD>;F`> >#9N:q[>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>8X} 8a?878ĞJ89Y:9c->8738/>8?8?8 <=o 9=J29=W<X)<8y>>;KD>;F`> >Ȋ9u':\2|?Ɨ;m{;y|?7;;Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>8X} 8a?878ĞJ8[8?98ױ =j97n8%?98R>8U;R>+8= :=W<X)<8y>>;KD>;F`> >Ȋ9u':\2|?Ɨ;B*;gq:}?ih;Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>8X} 8a?878ĞJ8?U89ʅ9;=>:|8W# >J88 u+?r83q;= 9CuN< 9=W<X)<8y>>;KD>;F`> >Ԋ9 ':K>*:?L?E;葐O?eJ<Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>b8FD8+?9ﬕ7U8{Q7:>6h 7l!92,M7mJ8:I?)7yG<M= +7{8b|8 e=s=6*4? >4>KD>;F`> >:Y%;UQ5<1|?I!; {?'`;<V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>~7P?iy8b8;%=8b~?=9y`;3~?ty>B? h=>>>>|7?">0w>>հ9iI:?@>`7?>>>>'E7?2?8ty>B? h=>>>>'[7V?>DJ>5v>=U>5b<>,?ty>B? h=>>>>S>N-?8[U=5F9όr?947?1:r?R=38>>>> Z7Q?A|8>s+?#=fT>6=5b<>,?ty>B? h=>>>>M8?Eߴ8N>N< X>+>rTq8SD?,7;ty>B? h=>>>>l)t8?Ȋ8o8!8 >i^W?_;1<[=?[=;X)>3>[@>&}5?p=F>>>Å78?8:8\B87Jx7>L7=7y.97;U78?-%8n7T=7G 8<7G=oT8=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Å78?8:8\B8 w75L7=EF-9L18+77;?$8m7D2k7媾9S8=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Å78?8:8\B8 785x9+668]x 968?79484F7H77 26=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>q=+8g?8W8/B8 786c<06m8S 966%8&=|?@79>o827dO7e6=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?FC;#; ~? "O:9:>>>>[@>&}5?F<p=t<>>>>"[8=8?|9 785x9+668]x 968?79484F7H77 26 e=s=6*4? >4>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>'E7?2?8 E887?5b<>,?ty>B? h=>>>>'E7?2?8S8c,?ty>B? h=>>>>'E7?2?881?"Y8#U{95b<>,?ty>B? h=>>>>'E7?2?8i?t9y>A95b<>,?ty>B? h=>>>>'E7?2?8?#8jK9>R>95b<>,?ty>B? h=>>>>'E7?2?8yV^?u;so< =5b<>,?ty>B? h=>>>>?co8~d`7?>>>>??809 8Å78?8:8\B8Lؙ728]7wZ<}6\47W9]7} 84?6y76Vw> =78T8=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Å78?8:8\B8v7,K77%e,9tC87=$8A7 /9 78%e?Sc759\S8=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Å78?8:8\B8LD8Eb8+[8TR>z.8(9->>58<Ӝ 9=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>"[8=8?|9v7J776,9B X/;Q7/97c8!=2o7P>> e=s=6*4? >4>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>'E7?2?8?#8jK9>R>95b<>,?ty>B? h=>>>>'E7?2?8& v<(8|?@95b<>,?ty>B? h=>>>>77 ?>=?QL=ܟ>5b<>,?ty>B? h=>>>>4g?=#9C;^?58:OD=@7۴?E:i;X?29>>>>'E7?2?898?(@95b<>,?ty>B? h=>>>>'E7?2?898?(@95b<>,?ty>B? h=>>>>=_>@ >>0>~>[!=9V)?5b<>,?>] ?`l9>>>>r(8?8,=9=k:X? 8?P:ty>B? h=>>>>?kmw?a= Y94*o9?@>`7?>>>>'E7?2?8ty>B? h=>>>>l)t8?Ȋ8o8!8I>=\>j>>[=?[=;X)>3>[@>&}5?p=F>>>Å78?8:8\B8z888ZR&=81:8Be8>~98>`8xd>>=u>8?Թ<$9=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Å78?8:8\B8Q8;F86=z:98X?98j>g-8T>= z>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Å78?8:8\B87(8r.7 k>؀6O7N`9`17:B??78 9w;Gk7g^7cm7=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>Å78?8:8\B80!7;8f{69:',68 j>6)8A@@?7<78"78y7=W<X)<8y>>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>"[8=8?|9Z7=8E71;@7Y9s:.n7}9o8 e=s=6*4? >4>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>'E7?2?8l:%?=x>5b<>,?ty>B? h=>>>>'E7?2?8p9 =8@w?5b<>,?ty>B? h=>>>>'E7?2?83w>~>~>>5b<>,?ty>B? h=>>>>'E7?2?83w>~>~>>5b<>,?ty>B? h=>>>>'E7?2?83w>~>~>>5b<>,?ty>B? h=>>>>GD>:Y"?A8(l?KII9I=p95b<>,?ˇo?=|7>>>>?.]A?8J>; =?@>`7?>>>> arch-Glyarch-Gly-r2-033017 GCGGCGGUaGUCuAGCCGGUUAgGACgcCGGCCUuuuAAGCCGguGAaCCCGGGUUCAAAUCCCGGCCGCCGCA  !"#$%&'()*+,-.IJKLMNOPmnopqrsuvwxyz{|}~oFri Mar 31 11:38:39 20173cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Gly-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Gly-r2-033017.sto cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Gly-r2-033017.cmL=L=Hz>Hz>V瞯<77Ѷ D4>>>> 8?]T?H`G@jr4?9z?=D;EFB[Υ>jy '?O#-#?x].lI@jE VI[? 1Z?s)*Qkw"@j< EׅO]?J%=<Pc?M@<%,= S4? >)=O5>*=;7>>.>,=>6> >` >3> ?h>\1>™a=_/?\=kK>o> >;=?=oaF?=U<:A?2=~]> 0Q>{> v=Lr>@= "?mSu?s:<u=‘>r=E1?Qs4=ք8>P<<;Kku?$AN*%>hM=e+ ?= >x`=2?e?&=><=2 >0l= ?S>:K>2>>>>Nu=8;?Ԕ<.X>=٣n=P!?i=b>a>>>n>=-Υ>B>ܓ>r>I>>[>wN>ή0=3?[=f=$>MD.?r=~ex=a %??1>=dY=>?=ױ>2==<`? >Kb>^> A> >Kb>^> A> >Kb>^> A>X[?E=l==Ra$>++?[=O=u,%?-0>{>1#1=,?")U=]]n>/>&z>$>!S>Tw>.5>)w>(\>Z3{>&f>>b>B=< \?= ?ٙ={F>? >j>>=#N>`>>9?=y=`v=t ?;r>o>'=?|= f>=eH<$=q?ceP<'+=^U!Y=mSu?s:<=1)?=I > >$? =9=U.&?+=79[>=DD?r6>[H>DU>- > ?>$>>кg>XI=K5?L=@R>ҹ=&>H:?;*f=C`%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>[z?5-<5-D??Ys?5-<$Q=Nl>D?Ī>t*?(qz?n1D?b(;>5Q?!x?n1<ҍD?b(;>5Q?/hz?k3D?i(>U?/hz?k3D?i(>U?/hz?k3D?:>D?b(;>5Q?(qz?n1D?b(;>5Q?(qz?n1D?l"? (>[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[!?5-Nl>D?Ī>t*?>?簄D?Ī>t*?[z?5-<5-D?Ī>t*?4>N>[~>Y?#L>Ī>t*?@x?ocD?k?K=[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?y2?O>5-<;=hXo?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?K0?5-<>Nl>D?Ī>t*?~@?n>dt<W=r?^/o?L=W?5-<{>Nl>D?Ī>t*?y?I<ID?;`? =[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?Ig?0=5-<$J?lW>Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*?[z?5-<5-D?Ī>t*???u>5-<\>+?Ī>t*?C}?q/<Nl>D?? arch-Glyarch-Gly-r2-033017 GCGgcGGUaGUcUAGcCGGUUAGgACgccGGCCUuuuAAGCCgguGAaCCCGGGUUCAAAUCCCGGCCGcCGCA (((((((,,<<<<_________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Gly-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Gly-r2-033017.sto @fFri Mar 31 11:38:39 2017  !"#$%&'()*+,-.IJKLMNOPmnopqrsuvwxyz{|}~4 8? 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arch-Hisarch-His-r2-033017 GCCggGGUAGgGUAGcCGGuUAgccugcgGGgCUuuuGAcCCcguGACCCGGGUUCAAAUCCCGGCCcgGGCC (((((((,,<<<<_________>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))):cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-His-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-His-r2-033017.sto@@FFri Mar 31 11:44:23 2017  !"#$%&'()*+,_`abcdefgijklmnopqrstuvwxyz{|}d{B 8? 8?U0B 8?OǀOǀOǀOǀOǀOǰLD>R>4 >\>@K --...///000111222333333444444555555666666777777888999:::;;;<<<===>>>?  !!!!!!""""""######$$$$$$%%%&&&'''((()))***+++,                                                  """""#((((()...../222555|88;;;>>>AAADDDGGGLLLLLMRRRRRSXXXXXY^^^^^_dddddehhhkkknnnqqqtttwwwzzz}~7 "#####())))).///222556888;;;>>>AAADDDGGGGGLMMMMMRSSSSSXYYYYY^_____deeehhhkkknnnqqqtttwwwzz6|}~~~~} $*036|}~79<?BEHNTZ`filorux{*,2'12)(%**0(($)*/(($))-('$))+''$(()&&#'''%$#&&%#%$#$#/110,1.,+&--,*)$++*('#))(&&"''&$$!%%$#" $#"!!"" !  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N=|s?o?-~<;=Nl>D?K=Bs?m.s?{<H=Nl>D?;=@t?UZu?ґD?_4=:t?a?VD?52=t?̄l?EƟD?cM=*s?zu?&<&D? =1w?Us?&<D? =1w?t?2<D? =]Uw?|>w ?A<D?f"=u?u?Ҧ<ҦD?ib=(q?zu?&<&D? =1w?zu?&<&D? =1w?zu?&<&D?L=\vf?kv?<D?=Ld?sv?̘<̘D?u6=*l?9v?YD?+%J=]s?v? ̕< ̕D?'='l?v?rD?>X?/3w?ˌ<ˌD?g=pq?9w?)d<)dD?>1P^?xw?$n<$nD? =ra?2w?<D?a_i==jq?2w?<D?a_i==jq?2w?<D?a_i==jq?2w?<D?a_i==jq?2w?<D?a_i==jq?2w?<D?a_i==jq?2w?<D?=m?pw?k+D?=Rk?|w?hD??q=\p?|w?hD??q=\p?|w?hD?~=,h?w?C<CD?y=gp?w?C<CD?y=gp?w?C<CD?y=gp?w?C<CD?=ai?w?CRD?F=Oo?w?CRD?F=Oo?w?CRD?F=Oo?w?CRD?>?x?;m<;mD?= f?x?;m<;mD?= f?x?;m<;mD?= f?x?;m<;mD?= f?x?;m<;mD?= f?x?;m<;mD?= f?x?;m<;mD?= f?x?;m<;mD?= f?x?;m<;mD?0AL?N>n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?td?=wX<=Z k?Ī>t*?{Nl>D?Ī>t*?kw?<D?`?[=n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?td?=wXĪ>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?n?y?wXD?Ī>t*?xR^?|i=wX<΄>k=-?Ī>t*?q|?jZ<Nl>D?? arch-Trparch-Trp-r2-033017 GGGGccGUGGCcuAGCCaGGuAugGCGgcGGGCUuuuGcgGucuaaggauuagaaaggcuuuuaaaaaguuuuuuaauguuaaauuucuuauggauuuuaaagcaguaaaucGGAGAuACCCGucGAUCGgGGGUUCAAAUCCCgcCggCCCCA (((((((,,<<<<_________>>>>,<<<<<_______________________________________________________________________________________>>>>>,,,,,<<<<<_______>>>>>))))))):cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Trp-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Trp-r2-033017.sto@4Fri Mar 31 12:11:46 2017  !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNO  Jq=&7?87?xz17?OǀOǀOǀOǀOǀOv>x>W>ks>4Wb DDEEEFFFGGGHHHIIIJJJJJJKKKKKKLLLLLLMMMMMMNNNNNNOOOPPPQQQRRRSSSTTTUUUV  !!!!!!""""""######$$$%%%&&&'''((()))***+++,,,---...///000111222333444555666777888999:::;;;<<<===>>>???@@@AAABBBC                                                                         """""#((((()...../222555|88;;;>>>AAADDDGGGLLLLLMRRRRRSXXXXXY^^^^^_dddddehhhkkknnnqqqtttwwwzzz}~      ###&&&))),,,///2227 "#####())))).///222556888;;;>>>AAADDDGGGGGLMMMMMRSSSSSXYYYYY^_____deeehhhkkknnnqqqtttwwwzz6|}~~~~}      ###&&&))),,,///22 $*036|}~  !$'*-0379<?BEHNTZ`filorux{*+2&22(($))0('$))/''$((-''$((+&&$'')&&$'''%%#&%%#%$#$#'*'&)&%(%$'$#&#"#"! 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>4>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2?=w2>>;>>>>+>SY? <>>>>:?)*;{=+,?ty>B? h=>>>>:?)*; >7[==B>5b<>,?ty>B? h=>>>>:?)*;nC>&=#>>5b<>,?ty>B? h=>>>>?e>z==>k>?@>`7?>>>>N;~?;;0:[@>&}5?p=F>>>9X:Lja:6O~?0;E:6:y9=;A8d<8z:;8:hf:Bv?k^F:E>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>9X:Lja:6O~?0;E:6:y9=;A8d<8z:;8:hf:Bv?k^F:E>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>9X:Lja:6O~?0;E:6:y9=;A8d<8z:;8:hf:Bv?k^F:E>;KD>;F`> ><<>$<?o=4>KD>;F`> >Cl:;ӏ=Z=V$X=Q1M?iX+>>j$?]5=<@=>>>>[@>&}5?F<p=t<>>>>;9:}?;y9=;A8d<8z:;8:hf:Bv?k^F:E4>KD>;F`> >=^0=z>-?4>KD>;F`> >V,=q=W=U>2? >';F>> =>>>>ty>B? h=>>>>:?)*;.,?ty>B? h=>>>>:?)*;.,?ty>B? h=>>>>:?)*;L;y? ;K<5b<>,?ty>B? h=>>>>:?)*;i>3Y,?ty>B? h=>>>>:?)*;{? ;;f;5b<>,?ty>B? h=>>>>:?)*;.,?ty>B? h=>>>>?.`7?>>>> arch-SeCarch-SeC-050516 =========++=======++++=============+++++++============++++==========+++++++=============+ GGCGCgGGGUACCGGGCUUGGUAGCCCGGGGCGGACUUCAGAUCCGUCGAGuuCGaguGaaCUCGGGGUUCGAUUCCCCCCCuGCGCCG  !"#$%&'()*+,-./012345689:;=>?@ABCDEFGHIJKLMNOPQRSTUWXYZ[\hThu May 5 11:04:41 2016ycmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-SeC-050516.sto cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cmL=L=Hz>Hz>V瞯<77Ѷ PA=2>>>>(8?]`7l[?~W[ Gho >j ꫫx?mscz?|?5^D+<9ji˃9D|?]m{? eu@j GsdX?g\8?OjM Q( @j |DL$zY?Ypï=2>E=P?xQ=P=JD=P?4P=qK=??~p=ϛ>a>7%>H>>dT=>r=>3l>k@>G>>C>>->?O=꟮=xC=P?O=>>?=V>9> =z?,g>X=+>->H=s??.=@>#= >7=о>> >{2 ?S/>C>>-?2> >>7>i?*>7=>_N>ʼn>}=>=>!==*W=sE?ѧ==PT?[=ѧ==PT?[=!==*W=sE?>J=\>*=Da>Í5>1>> > V>>/m>h>N>^">ú>=?*bF>;>z>=p> ==?]=pF?{i=YJ=@B=`Q?g!M=*>!B>?n >QI=ZU??Ձ=\>=XB=Y0Q?9N= ='C=$Q?}N=&?O=O@>r==|F?+)=)=!==*W=sE?!==*W=sE?=|F?+)=)=AS?2B={==ѧ==PT?[=AS?2B={===p>=h2?&=I? f=y=;H&=4I?ff=V=.=h[=G?e== H>=]>Is>#=&@J?ue== f >Wv=g2?+~=,>RY>+`> '>=#=>ܸ>>Ο> >߶>>>u̟>J=T'??<=!>>b[= 8?=>w> j>Ӣ>ؾ}>%>ψ>u>v>Zd>*>>=ч\= F?j=u >G>x.>o> >PF>z.>ipt=#?=5b>Lj>:>m\y>]>=Tb1?#=i %>YJ=@B=`Q?g!M==-B=XNQ?M==wB=E>Q?M==XB=Y0Q?9N=!==*W=sE?!==*W=sE?=|F?+)=)=?O>y= ?=AS?2B={==!==*W=sE?!==*W=sE?;H&=4I?ff=V=\%=gI?)f=+=$=J?6e==#=&@J?ue==N=?)".>@])>(=I?g===?$.>Rc)>d>U>cw>L>7jL>%>>w>L=xe>[B>rz>@=r5\=F?}-=s&=I?f==j&=I?f=e`=ѧ==PT?[=%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>%>;u?HD??;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?_?H<=Nl>D?Ī>t*?r>t?ID?H6?:m>;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?_?H<=Nl>D?Ī>t*?r>t?ID?H6?:m>;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?O6?>H<)\?X>Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?uU?->HĪ>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?/pi?jk=HĪ>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?;u?HD?Ī>t*?z?_<Nl>D?? arch-SeCarch-SeC-050516 =========++=======++++=============+++++++============++++==========+++++++=============+ GGCgcgGGGUaCcGGGcuUGGUagccCgGGGCGGACUUCAGAUCCGuCGaGuuCGauuGggCuCGGGGUUCGAUUCCCCCCCugcGCCG (((((((((,,<<<<<<<____>>>>>>><<<<<<_______>>>>>><<<<<<____>>>>>><<<<_______>>>>))))))))):cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-SeC-050516.sto x?Thu May 5 11:04:41 2016  !"#$%&'()*+,-./012345689:;=>?@ABCDEFGHIJKLMNOPQRSTUWXYZ[\=2}8?j!8? R8?OǀOǀOǀOǀOǀO`W&>v>>:`>tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-LeuTAA.cm0000644000543100007160000017250712573631650021466 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Leu-TAA-2nd-align STATES 289 NODES 76 CLEN 90 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:54 2015 COM [1] cmbuild --hand --enone Leu-TAA-final-vert.cm ../Leu-TAA-2nd-align.sto COM [2] cmcalibrate --seed 208 Leu-TAA-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1087 EFFN 1087.000000 CKSUM 1125709857 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.6229 0.71866 ECMLC 0.78361 -5.53918 2.23016 1600000 528717 0.002270 ECMGC 0.29879 -57.99731 -42.62612 1600000 39507 0.010125 ECMLI 0.80926 -4.78896 2.66060 1600000 498183 0.002409 ECMGI 0.31002 -53.57542 -38.85656 1600000 38352 0.010430 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 119 -15.014 -16.260 -0.000 -12.713 IL 1 1 2 1 4 23 45 102 121 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 47 103 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 106 - U - + MR 3 2 3 5 5 31 55 101 119 -15.063 -0.000 -14.879 -15.091 -15.982 0.683 -2.062 -9.824 1.107 D 4 2 3 5 5 21 42 99 118 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 23 45 101 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 105 G C = = MP 6 5 3 10 6 31 54 100 118 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -11.097 -1.077 -11.027 2.253 -12.218 -11.356 -7.272 -11.601 -11.037 3.329 -4.040 -1.473 -2.265 -3.845 -9.293 -9.942 ML 7 5 3 10 6 22 43 98 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 22 43 98 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 19 40 96 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 23 45 99 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 23 45 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 104 U A = = MP 12 11 6 16 6 31 52 98 116 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -13.049 -13.330 -12.366 -9.566 -3.209 -12.511 2.055 -4.422 -12.470 -9.538 -12.590 -11.733 3.461 -2.936 -1.776 -1.981 ML 13 11 6 16 6 22 43 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 22 43 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 19 40 94 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 22 44 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 45 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 103 U A = = MP 18 17 6 22 6 29 50 96 114 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -4.272 -4.149 -12.366 -4.099 -4.665 -12.511 -1.860 -11.633 -12.470 -9.536 -12.590 -11.724 3.948 -5.028 -6.107 -4.751 ML 19 17 6 22 6 22 43 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 22 43 94 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 19 40 92 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 22 44 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 22 44 95 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 102 A U = = MP 24 23 6 28 6 27 48 94 112 -6.464 -15.937 -0.017 -14.713 -10.952 -15.388 -2.870 -0.353 -10.122 3.470 -4.050 -10.791 -6.373 -4.958 -10.491 1.716 -10.775 -2.209 -1.597 -4.427 -8.376 -6.450 ML 25 23 6 28 6 22 43 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 22 43 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 19 39 90 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 24 47 93 111 -6.404 -6.667 -0.042 -8.322 -9.098 -8.758 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 22 44 93 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 101 g c = = MP 30 29 6 34 6 25 46 92 110 -15.997 -15.936 -0.001 -10.519 -14.992 -15.387 -9.967 -0.630 -9.785 2.785 -4.584 -4.610 -5.982 -5.422 -10.224 2.862 -10.470 -0.159 -3.385 -5.450 -7.990 -4.430 ML 31 29 6 34 6 21 42 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 21 42 90 109 -7.710 -6.439 -0.761 -6.417 -1.551 -4.630 -0.344 0.837 -1.073 -0.074 D 33 29 6 34 6 18 39 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 22 43 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 22 43 91 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 100 G C = = MP 36 35 6 40 6 23 44 90 108 -15.996 -15.936 -0.000 -14.712 -14.992 -15.387 -5.784 -1.623 -9.783 0.668 -4.581 -1.076 -2.406 -4.287 -5.955 3.490 -10.468 -0.159 -0.850 -1.228 -7.988 -2.503 ML 37 35 6 40 6 21 42 89 107 -7.261 -7.607 -0.507 -2.016 -7.457 -4.987 -0.435 -1.430 1.217 -0.826 MR 38 35 6 40 6 20 41 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 18 39 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 21 42 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 21 42 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 99 G C = = MP 42 41 6 46 4 21 42 88 106 -15.220 -5.166 -0.041 -13.841 -12.109 -6.814 -12.249 0.991 -13.318 -11.580 -8.258 -12.753 -11.494 3.625 -3.351 0.379 -2.256 -4.371 -10.350 -11.163 ML 43 41 6 46 4 20 41 87 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 19 40 87 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 18 39 86 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 21 42 88 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 20 41 87 105 -5.731 -0.032 -8.431 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 19 40 86 104 -16.130 -0.008 -7.558 -4.438 -11.291 -12.935 1.983 D 49 47 6 50 3 18 39 84 103 -6.174 -1.687 -0.566 IL 50 50 3 50 3 20 41 88 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 18 39 85 103 -16.777 -0.000 -1.496 -12.368 1.866 -11.376 D 52 50 3 53 2 17 38 84 102 -9.328 -0.002 IL 53 53 3 53 2 19 40 86 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 17 38 84 102 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 18 47 64 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 18 47 64 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 5 29 46 -0.000 -14.125 -13.532 -14.172 [ MATP 15 ] 11 33 G C = = MP 58 57 1 62 6 2 6 29 46 -15.997 -15.937 -0.001 -10.916 -14.993 -15.388 -13.741 -10.561 -15.419 -2.023 -15.470 -11.788 -9.855 -15.121 -11.916 3.933 -12.131 -1.055 -10.193 -12.230 -12.266 -14.259 ML 59 57 1 62 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 32 C G = = MP 64 63 6 68 6 2 4 27 44 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -12.812 -13.053 -8.430 -12.838 -6.665 -7.913 3.998 -14.108 -14.762 -11.332 -7.938 -13.104 -9.919 -13.721 -11.122 -13.282 ML 65 63 6 68 6 1 1 27 45 -7.063 -7.409 -2.124 -0.485 -7.259 -4.789 -0.351 0.845 -1.081 -0.078 MR 66 63 6 68 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 31 A U = = MP 70 69 6 74 6 2 2 25 42 -15.997 -15.936 -0.016 -14.712 -7.595 -7.428 -2.984 -2.510 -12.234 3.955 -14.320 -3.595 -9.788 -12.274 -11.796 -7.364 -12.464 -7.989 -9.739 -3.425 -11.624 -10.833 ML 71 69 6 74 6 1 1 26 44 -7.063 -7.409 -2.124 -0.485 -7.259 -4.789 1.212 -1.117 -0.861 -0.572 MR 72 69 6 74 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 30 G U = = MP 76 75 6 80 4 2 3 23 40 -6.326 -15.411 -0.018 -13.825 -0.797 -3.531 -4.351 -2.908 -3.038 -15.510 -3.859 -12.260 2.251 -0.197 -1.423 3.143 -9.740 -13.523 -11.644 -2.987 ML 77 75 6 80 4 1 1 25 43 -4.403 -4.586 -0.303 -3.315 -0.250 -1.199 1.048 -0.609 MR 78 75 6 80 4 1 1 23 42 -7.997 -7.026 -0.114 -3.954 1.929 -4.254 -3.733 -3.965 D 79 75 6 80 4 0 0 22 40 -8.135 -7.816 -0.100 -4.087 IL 80 80 5 80 4 1 1 24 42 -5.826 -6.509 -0.045 -8.995 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 2 20 36 -16.130 -0.000 -14.784 1.989 -12.019 -5.105 -11.387 D 83 81 6 84 3 0 0 22 41 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - G - + - ML 85 84 3 87 3 1 2 19 35 -16.130 -0.000 -14.784 -1.905 -4.507 1.870 -4.911 D 86 84 3 87 3 0 0 21 40 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - C - + - ML 88 87 3 90 3 1 1 18 34 -16.130 -0.037 -5.314 -2.714 1.725 -5.378 -0.952 D 89 87 3 90 3 0 0 20 38 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - C - + - ML 91 90 3 93 3 1 1 17 32 -0.054 -4.764 -14.747 -1.475 1.645 -5.209 -1.044 D 92 90 3 93 3 0 0 15 31 -12.254 -0.015 -6.646 IL 93 93 3 93 3 1 1 16 31 -6.034 -0.022 -13.456 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - + - ML 94 93 3 96 3 1 1 15 30 -16.130 -0.000 -14.784 -2.155 -12.411 1.916 -11.396 D 95 93 3 96 3 0 0 17 36 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - + - ML 97 96 3 99 3 1 1 14 28 -16.130 -0.000 -14.784 -3.641 -12.430 1.971 -11.404 D 98 96 3 99 3 0 0 16 34 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 13 26 -0.185 -3.052 -14.784 -1.243 0.021 -4.514 1.333 D 101 99 3 102 3 0 0 9 22 -6.174 -1.687 -0.566 IL 102 102 3 102 3 1 1 12 25 -2.140 -0.371 -13.710 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.849 -2.188 -5.991 -2.613 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.130 -0.000 -14.784 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - A - + - ML 109 108 2 111 5 1 1 26 45 -5.742 -0.027 -14.879 -15.091 -15.982 1.658 -3.043 -0.632 -3.703 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -6.228 -0.030 -7.907 -9.739 -9.013 0.000 0.000 0.000 0.000 [ MATP 30 ] 36 52 A U = = MP 112 111 3 116 6 2 2 25 44 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -1.287 -2.073 -3.423 3.188 -4.110 -5.299 -1.232 -7.791 -4.461 0.359 -8.082 -2.156 1.937 -4.011 -2.543 -6.708 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 37 51 A U = = MP 118 117 6 122 6 2 2 23 42 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -11.999 -1.916 -12.178 3.800 -14.250 -3.874 -9.668 -4.024 -11.770 0.317 -12.427 -2.106 -3.483 -4.554 -11.518 -3.906 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 38 50 A U = = MP 124 123 6 128 6 2 2 21 40 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -12.039 -3.293 -12.235 3.907 -14.376 -15.531 -9.834 -12.277 -11.795 -0.315 -12.465 -3.440 -9.758 -13.540 -11.664 -10.833 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 49 G C = = MP 130 129 6 134 6 2 2 19 38 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -12.817 -5.575 -13.340 1.997 -14.930 -12.450 -9.845 -13.330 -11.866 3.538 -12.255 -1.433 -10.003 -12.621 -11.994 -11.971 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 48 g c = = MP 136 135 6 140 4 2 2 17 35 -15.220 -15.427 -0.000 -13.841 -11.749 2.536 -11.844 1.697 -13.609 -1.834 -8.875 -4.439 -11.608 2.662 -12.189 -3.047 -8.968 -2.776 -10.796 -5.080 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.130 -0.000 -14.784 -10.126 1.828 -5.864 -1.215 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - C - + - ML 145 144 3 147 3 1 1 13 31 -16.130 -0.000 -14.784 -5.746 1.301 -10.172 0.601 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.130 -0.000 -14.784 -13.415 -12.035 -14.993 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.130 -0.000 -14.784 2.000 -12.068 -11.314 -11.401 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.130 -0.000 -14.784 2.000 -12.068 -11.314 -11.401 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.130 -0.000 -14.784 0.547 -10.739 1.331 -5.417 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.048 1.484 -5.662 -2.743 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 47 66 -16.130 -0.000 -14.784 IL 165 165 2 165 3 1 4 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 53 - c - + - ML 166 165 2 168 3 1 3 47 66 -16.130 -0.000 -14.784 0.098 0.527 -2.350 0.371 D 167 165 2 168 3 0 1 46 65 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 54 - a - + - ML 169 168 3 171 2 1 2 46 65 -16.785 -0.000 0.725 0.180 -2.899 0.112 D 170 168 3 171 2 0 1 45 64 -8.445 -0.004 IL 171 171 3 171 2 1 2 47 66 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 45 64 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 25 44 -7.821 -14.125 -13.532 -0.007 [ MATP 48 ] 55 72 g c = = MP 174 173 1 178 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 38 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 178 178 5 178 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 56 71 g c = = MP 180 179 6 184 6 2 2 29 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 36 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 184 184 5 184 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 57 70 g c = = MP 186 185 6 190 6 2 2 27 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 190 190 5 190 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 58 69 g c = = MP 192 191 6 196 6 2 2 25 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 13 32 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 196 196 5 196 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 59 68 g c = = MP 198 197 6 202 6 2 2 23 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 12 30 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 202 202 5 202 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 60 67 g c = = MP 204 203 6 208 6 2 2 21 39 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 11 29 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 208 208 5 208 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 61 66 g c = = MP 210 209 6 214 4 2 2 19 37 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 10 29 -15.433 -15.115 -5.523 -0.032 IL 214 214 5 214 4 1 1 20 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - C - + - ML 216 215 6 218 3 1 1 13 32 -10.707 -0.003 -9.361 -4.000 1.292 -5.071 0.545 D 217 215 6 218 3 0 0 8 27 -17.515 -6.164 -0.020 IL 218 218 3 218 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - C - + - ML 219 218 3 221 3 1 1 12 31 -11.367 -1.279 -0.767 -6.781 1.988 -7.235 -5.855 D 220 218 3 221 3 0 0 6 25 -17.495 -13.008 -0.000 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - C - + - ML 222 221 3 224 3 1 1 12 30 -10.092 -3.195 -0.168 -5.405 1.969 -5.889 -4.508 D 223 221 3 224 3 0 0 5 24 -17.527 -13.040 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 28 46 -16.130 -0.000 -14.784 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 73 - A - + - ML 231 230 2 233 3 1 2 28 46 -0.981 -1.019 -14.784 1.091 0.291 -3.079 -0.921 D 232 230 2 233 3 0 0 26 44 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 27 46 -4.810 -0.053 -12.597 0.000 0.000 0.000 0.000 [ MATL 62 ] 76 - C - + - ML 234 233 3 236 5 1 1 26 45 -15.063 -0.000 -14.879 -15.091 -15.982 -3.703 1.889 -5.307 -2.368 D 235 233 3 236 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 77 97 A U = = MP 237 236 3 241 6 2 2 25 44 -15.997 -6.133 -0.021 -14.713 -14.993 -15.388 -12.039 -5.335 -12.235 3.783 -14.376 -15.531 -9.834 -3.760 -11.795 0.907 -12.465 -2.371 -9.758 -4.007 -11.664 -10.833 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 24 43 -5.875 -0.038 -9.386 -7.554 -8.660 0.000 0.000 0.000 0.000 [ MATP 64 ] 78 95 G C = = MP 243 242 6 247 6 2 2 23 42 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -3.850 -2.609 -14.105 -0.017 -15.196 -12.056 -9.851 -14.027 -11.893 3.884 -12.187 -6.300 -10.103 -12.398 -12.135 -12.778 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 79 94 A U = = MP 249 248 6 253 6 2 2 21 40 -6.266 -5.529 -0.051 -14.713 -14.993 -15.388 -12.040 -1.587 -12.236 3.528 -14.376 -15.518 -9.834 -12.278 -11.795 1.921 -12.464 -1.556 -9.759 -13.538 -11.665 -10.834 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 20 39 -6.589 -6.852 -0.037 -8.507 -9.283 -8.943 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 20 39 -6.434 -0.026 -9.945 -8.112 -9.218 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 92 G C = = MP 255 254 6 259 6 2 2 19 37 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -13.461 -2.194 -14.516 -0.340 -14.767 -4.995 -2.293 -14.715 -11.840 3.817 -12.034 -8.354 -0.601 -12.004 -11.670 -13.527 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 91 G C = = MP 261 260 6 265 4 2 2 17 35 -15.220 -15.427 -0.001 -10.785 -13.837 -1.942 -15.801 -1.060 -15.518 -11.750 -9.856 -15.402 -11.920 3.931 -12.123 -8.472 -10.208 -12.206 -12.288 -14.733 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 83 - U - + - ML 267 266 6 269 3 1 1 14 32 -16.129 -0.000 -14.783 -4.075 -5.336 -9.996 1.969 D 268 266 6 269 3 0 0 18 36 -7.390 -0.508 -1.782 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 84 - U - + - ML 270 269 3 272 3 1 1 13 31 -16.130 -0.000 -14.784 -9.194 -5.204 -3.100 1.947 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 85 - C - + - ML 273 272 3 275 3 1 1 12 30 -16.130 -0.000 -14.784 -11.594 1.983 -12.061 -4.468 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 86 - A - + - ML 276 275 3 278 3 1 1 10 29 -16.130 -0.000 -14.784 1.988 -12.016 -5.002 -11.386 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.130 -0.000 -14.784 1.991 -12.020 -11.325 -5.350 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - A - + - ML 282 281 3 284 3 1 1 6 11 -5.522 -0.032 -14.784 1.240 -0.117 -1.328 -1.651 D 283 281 3 284 3 0 0 5 10 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 6 11 -5.396 -0.040 -8.096 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -9.073 -2.553 -5.227 1.926 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Leu-TAA-2nd-align LENG 90 MAXL 175 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:55 2015 COM [1] cmbuild --hand --enone Leu-TAA-final-vert.cm ../Leu-TAA-2nd-align.sto NSEQ 1087 EFFN 4.938572 CKSUM 1125709857 STATS LOCAL MSV -9.0052 0.71866 STATS LOCAL VITERBI -9.7579 0.71866 STATS LOCAL FORWARD -3.3688 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35924 1.39646 1.40763 1.38250 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 0.00000 * 1 1.40533 2.54628 0.54483 2.33921 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 2 2.27234 1.18772 2.06491 0.76532 2 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 3 3.82457 3.08422 3.66111 0.09794 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 4 1.01428 2.13154 0.98378 1.93251 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03507 3.85715 4.31717 0.96767 0.47798 1.09861 0.40547 5 1.24611 2.40679 0.66094 2.24518 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02635 4.34271 4.34271 1.46634 0.26236 1.08143 0.41417 6 1.66712 2.18535 0.58031 1.97294 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 7 1.74168 2.65051 0.40441 2.44424 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 8 2.94631 2.99202 3.59277 0.13954 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.03022 4.34305 4.08833 1.46634 0.26236 1.09861 0.40547 9 2.29097 3.71866 0.17496 3.35024 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.02644 4.33928 4.33928 1.46634 0.26236 0.93620 0.49777 10 2.85068 3.92352 0.10494 3.81459 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 11 4.21230 0.08793 4.09032 2.94449 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 12 0.03859 4.66643 4.03996 4.52382 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.03443 4.34305 3.87056 1.46634 0.26236 1.09861 0.40547 13 1.64163 1.71374 0.83910 1.63964 14 g = - < 1.38629 1.38629 1.38629 1.38629 0.03569 3.81854 4.33517 0.94272 0.49359 0.80955 0.58889 14 0.07270 4.00197 3.51633 3.81082 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 15 2.23537 3.24761 0.22091 2.94902 17 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 16 2.31927 0.40579 3.06981 1.66721 18 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04495 4.34305 3.47516 1.46634 0.26236 1.09861 0.40547 17 1.98407 0.50516 2.87521 1.59612 19 C + - _ 1.38629 1.38629 1.38629 1.38629 1.23922 0.36075 4.32493 0.05165 2.98894 0.60958 0.78434 18 2.60644 3.93851 0.12991 3.55589 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 19 3.12037 4.28711 0.08204 3.86906 23 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 20 1.76457 1.44455 2.52599 0.66766 24 U + - _ 1.38629 1.38629 1.38629 1.38629 1.06419 0.44317 4.34305 0.28542 1.39311 1.09861 0.40547 21 0.27145 2.47904 2.82974 2.35518 29 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03097 4.34305 4.04573 1.46634 0.26236 1.09861 0.40547 22 1.52829 1.65328 1.51294 0.99045 30 u = - > 1.38629 1.38629 1.38629 1.38629 0.02646 4.33854 4.33854 1.46634 0.26236 0.93045 0.50150 23 4.72263 4.18229 4.51359 0.03575 31 U = - > 1.38629 1.38629 1.38629 1.38629 0.02635 4.34271 4.34271 1.46634 0.26236 1.10743 0.40109 24 3.21574 4.22995 0.07639 3.97017 32 G = - > 1.38629 1.38629 1.38629 1.38629 0.02635 4.34271 4.34271 1.46634 0.26236 1.08121 0.41428 25 3.94351 0.14273 3.73747 2.40994 33 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 26 0.43049 2.50484 1.81056 2.25801 34 A + - , 1.38629 1.38629 1.38629 1.38629 0.04014 3.63626 4.34305 0.80151 0.59539 1.09861 0.40547 27 1.16944 1.67774 1.48875 1.28370 36 a = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 28 0.47717 2.56896 1.54357 2.41653 37 A = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 29 0.20720 3.82803 1.98765 3.56230 38 A = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 30 1.56114 3.08127 0.37029 2.92486 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 31 1.16579 2.23771 0.77986 2.09435 40 g = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 32 2.87791 0.26439 3.43215 1.93963 41 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 33 2.37298 0.68769 3.01522 1.03556 42 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 34 3.50765 3.33151 4.04868 0.08681 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 35 0.05825 4.16787 3.81587 3.95889 44 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 36 0.05825 4.16787 3.81587 3.95889 45 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 37 1.07451 2.98328 0.63120 2.57762 46 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 38 1.42135 0.64802 2.70622 1.77939 47 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 39 2.36752 0.64429 2.09432 1.35442 48 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 40 3.16973 0.43213 2.89264 1.37267 49 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 41 3.76108 2.23614 3.61421 0.17087 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 42 2.67131 1.65063 2.39916 0.43369 51 U = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 43 1.43766 1.62073 1.46999 1.09412 52 u = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 44 1.29016 1.25358 2.13743 1.13527 53 u + - , 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 45 1.05130 1.41541 2.16420 1.22810 54 a + - , 1.38629 1.38629 1.38629 1.38629 1.34732 4.34305 0.31874 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 47 1.80312 1.30590 1.07725 1.49721 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 48 1.80082 1.30660 1.07810 1.49674 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 49 1.79981 1.30691 1.07848 1.49654 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 50 1.79943 1.30703 1.07862 1.49646 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 51 1.79935 1.30705 1.07865 1.49645 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 52 1.79942 1.30703 1.07862 1.49646 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.27599 0.03851 53 1.29545 1.40012 1.75753 1.18029 62 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09020 3.14368 3.14368 1.46634 0.26236 3.48274 0.03121 54 1.36146 1.16797 1.84061 1.29464 63 c + - _ 1.38629 1.38629 1.38629 1.38629 0.14300 3.17524 2.39179 1.46634 0.26236 4.02552 0.01802 55 1.24381 1.37888 1.70333 1.28093 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.12855 3.12429 2.56831 1.46634 0.26236 4.04653 0.01764 56 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 57 1.73066 1.22003 1.16196 1.53833 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 58 1.73055 1.22008 1.16200 1.53830 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 59 1.73052 1.22009 1.16201 1.53829 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 60 1.73064 1.22004 1.16197 1.53832 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 61 1.73101 1.21988 1.16183 1.53843 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 62 1.73185 1.21953 1.16152 1.53868 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 63 1.73350 1.21882 1.16092 1.53917 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03513 3.36630 64 0.85507 1.40666 2.22485 1.50642 73 a + - , 1.38629 1.38629 1.38629 1.38629 0.49167 0.97977 4.34305 0.10022 2.35009 1.09861 0.40547 65 2.80213 0.22207 3.44428 2.23930 76 C + - , 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 66 0.50504 2.74333 1.35252 2.60944 77 A = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 67 2.01507 3.03742 0.27035 2.88930 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 68 0.66218 2.97002 0.99101 2.78434 79 A = - < 1.38629 1.38629 1.38629 1.38629 0.03596 3.80198 4.34305 0.92331 0.50617 1.09861 0.40547 69 1.94631 2.65710 0.35803 2.43047 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 70 2.57175 3.74119 0.13565 3.62205 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02670 4.34305 4.31599 1.46634 0.26236 1.09861 0.40547 71 2.82141 2.83661 3.46643 0.16178 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02635 4.34270 4.34270 1.46634 0.26236 1.08065 0.41457 72 2.75682 2.69564 2.97140 0.20117 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 73 3.76476 0.08913 4.28701 3.02918 85 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 74 0.07368 3.99177 3.49953 3.80082 86 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 75 0.06953 3.99977 3.71143 3.71301 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 76 0.76965 1.60452 1.95407 1.63916 88 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04243 3.55614 4.34305 0.74820 0.64096 1.09861 0.40547 77 2.77564 2.46179 3.20984 0.20820 90 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 78 3.80808 0.15113 3.57474 2.40743 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 79 2.64371 0.40157 2.48882 1.73372 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.04243 3.55614 4.34305 0.74820 0.64096 1.09861 0.40547 80 3.01746 1.10085 2.76874 0.58744 94 U = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 81 3.09402 0.30811 2.84746 1.82108 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.03690 3.76233 4.34305 0.89266 0.52689 1.09861 0.40547 82 2.86349 1.50305 2.58144 0.43879 97 U = - > 1.38629 1.38629 1.38629 1.38629 0.04698 3.41428 4.34305 0.66183 0.72547 1.09861 0.40547 83 2.70305 0.50615 2.43828 1.41521 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02681 4.34305 4.30804 1.46634 0.26236 1.09861 0.40547 84 2.26638 0.64099 2.08308 1.40650 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02635 4.34259 4.34259 1.46634 0.26236 1.07541 0.41727 85 2.50140 0.74804 2.23458 1.08560 101 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 86 2.14031 1.05430 1.94845 0.93790 102 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 87 0.10849 3.81604 2.91860 3.61974 103 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 88 0.88954 2.21551 1.06251 2.00641 104 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 89 2.61174 0.61005 2.34512 1.24677 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 90 1.09458 1.99257 2.38690 0.82768 106 u + - : 1.38629 1.38629 1.38629 1.38629 0.01326 4.32997 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/Cren-eury-BHB-noncan.cm0000644000543100007160000006727313066315714020745 0ustar pchanlowelabINFERNAL1/a [1.1.2 | July 2016] NAME Cren-eury-NC-Intron DESC This subset of noncanonical introns is used to build BHB intron covariance model. STATES 124 NODES 28 CLEN 40 W 177 ALPH RNA RF yes CONS yes MAP yes DATE Mon Mar 27 16:07:38 2017 COM [1] cmbuild -F --hand --enone Cren-eury-BHB-noncan-nc.cm Cren-eury-BHB-noncan.sto COM [2] cmcalibrate --hfile cmcalibrate_files/Cren-eury-BHB-noncan.hfile --sfile cmcalibrate_files/Cren-eury-BHB-noncan.sfile --qqfile cmcalibrate_files/Cren-eury-BHB-noncan.qqfile --ffile cmcalibrate_files/Cren-eury-BHB-noncan.ffile --seed 208 Cren-eury-BHB-noncan.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 165 EFFN 165.000000 CKSUM 3763066553 NULL 0.000 0.000 0.000 0.000 EFP7GF 0.2076 0.83041 ECMLC 0.47290 -4.97691 5.87434 1600000 203135 0.005907 ECMGC 0.47339 -3.41533 8.23288 1600000 99275 0.004029 ECMLI 0.47423 -2.93392 7.40609 1600000 161718 0.007420 ECMGI 0.46296 -2.19231 9.36586 1600000 84327 0.004743 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 177 341 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 IL 1 1 2 1 6 1 3 178 342 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 3 178 342 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 75 c g = = MP 3 2 3 7 6 2 7 177 341 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 -1.061 -0.045 -1.012 -1.151 -0.072 -0.570 1.305 -0.225 1.224 0.077 -0.866 -2.351 -0.185 -0.078 0.993 -0.514 ML 4 2 3 7 6 1 3 175 339 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 3 174 338 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 1 170 334 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 3 176 340 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 3 176 340 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 74 g c = = MP 9 8 6 13 6 2 7 175 339 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 -1.233 0.278 -2.038 0.480 -1.534 0.435 0.405 -2.471 -1.173 1.364 0.835 -1.286 0.363 0.579 0.006 -0.924 ML 10 8 6 13 6 1 3 173 337 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 3 172 337 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 1 168 332 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 174 338 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 174 338 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 73 g c = = MP 15 14 6 19 6 2 7 173 337 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 -3.472 0.092 0.949 0.576 -4.772 -1.863 0.344 -0.440 0.453 1.501 1.167 0.145 -1.018 -2.047 -0.620 -2.577 ML 16 14 6 19 6 1 3 171 335 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 171 335 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 167 331 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 172 336 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 172 336 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 72 g c = = MP 21 20 6 25 6 2 6 171 335 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 -1.473 0.916 -0.153 0.613 0.144 -0.072 0.947 -1.819 -0.894 1.587 0.113 -0.972 -1.769 -2.777 0.419 -2.742 ML 22 20 6 25 6 1 2 169 333 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 169 333 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 166 330 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 170 334 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 170 334 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 71 g c = = MP 27 26 6 31 4 2 5 169 333 -12.309 -5.506 -0.034 -10.008 -4.579 -2.294 -0.074 -1.441 -0.528 -0.851 1.384 -0.178 -1.240 2.113 -0.506 -0.181 -0.051 -1.318 0.376 -0.526 ML 28 26 6 31 4 1 2 167 332 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 2 168 332 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 1 165 329 -12.737 -14.007 -2.036 -0.404 IL 31 31 5 31 4 1 2 168 332 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 3 168 332 -3.905 -0.122 -6.144 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - g - + MR 33 32 6 35 3 1 4 167 331 -13.719 -0.000 -12.037 -0.245 -0.554 0.318 0.297 D 34 32 6 35 3 0 1 165 329 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 2 167 331 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 67 - a - + MR 36 35 3 38 3 1 4 166 330 -13.719 -0.000 -12.037 0.768 -0.791 0.607 -2.358 D 37 35 3 38 3 0 1 164 328 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 2 166 330 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 66 - A - + MR 39 38 3 41 5 1 4 165 329 -12.361 -0.001 -12.177 -12.389 -13.280 1.880 -2.882 -3.171 -3.766 D 40 38 3 41 5 0 1 163 327 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 2 165 329 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 64 c g = = MP 42 41 3 46 6 2 5 164 328 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 -4.801 -3.564 -0.402 -0.832 -4.950 -2.985 2.703 -5.320 -2.926 1.261 -5.628 1.584 -0.109 -2.001 0.042 -3.142 ML 43 41 3 46 6 1 2 162 326 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 2 161 326 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 157 321 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 2 163 327 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 2 163 327 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 63 g c = = MP 48 47 6 52 6 2 5 162 326 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 -7.498 -3.686 -7.429 0.268 -6.903 -8.164 2.184 -7.349 -7.508 2.721 -3.030 -2.426 0.548 -7.464 0.812 -6.170 ML 49 47 6 52 6 1 2 160 324 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 2 160 324 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 156 320 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 2 161 325 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 161 325 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 62 G C = = MP 54 53 6 58 6 2 5 160 324 -13.330 -13.269 -0.001 -12.046 -12.326 -12.721 -7.353 -6.037 -7.181 0.964 -8.043 -7.789 1.777 -7.778 -7.582 3.129 -7.847 -0.870 -0.324 -7.052 -1.363 -3.650 ML 55 53 6 58 6 1 2 158 323 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 2 158 322 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 155 319 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 2 159 323 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 2 159 323 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 61 g c = = MP 60 59 6 64 4 2 4 158 322 -12.512 -12.719 -0.001 -11.133 -7.592 -7.148 -0.881 -0.908 -6.634 -3.037 2.222 -7.233 -1.665 2.601 -7.995 -4.763 -0.398 -7.712 1.539 -6.230 ML 61 59 6 64 4 1 1 157 321 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 156 320 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 155 319 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 2 158 322 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 2 158 322 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - a - + - ML 66 65 6 68 3 1 3 156 320 -13.424 -0.000 -12.078 0.662 -0.330 0.065 -0.795 D 67 65 6 68 3 0 0 154 318 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 2 157 321 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - g - + - ML 69 68 3 71 3 1 2 155 319 -13.424 -0.000 -12.078 -0.322 0.135 0.610 -0.795 D 70 68 3 71 3 0 0 153 317 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 156 320 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - + - ML 72 71 3 74 5 1 1 154 318 -12.361 -0.059 -6.722 -7.923 -5.263 1.479 -1.964 -1.558 -0.696 D 73 71 3 74 5 0 0 152 316 -4.959 -0.803 -4.221 -2.596 -2.508 IL 74 74 3 74 5 1 1 154 318 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 17 59 G C = = MP 75 74 3 79 6 2 2 153 317 -13.274 -13.214 -0.042 -11.990 -6.209 -6.079 -7.614 -6.898 -7.548 -1.504 -6.845 -8.292 2.351 -7.356 -7.576 3.053 -8.011 -1.928 0.811 -7.620 -2.613 -6.248 ML 76 74 3 79 6 1 1 148 312 -7.943 -8.289 -3.004 -2.698 -8.139 -0.493 1.644 -2.068 -1.730 -1.582 MR 77 74 3 79 6 1 1 152 316 -7.855 -6.584 -2.493 -6.563 -0.395 -4.776 1.302 -1.253 -0.989 -0.711 D 78 74 3 79 6 0 0 145 309 -12.214 -10.912 -6.709 -7.392 -7.409 -0.032 IL 79 79 5 79 6 1 1 152 317 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 152 317 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 18 58 G C = = MP 81 80 6 85 6 2 2 151 315 -13.233 -13.173 -0.256 -11.949 -5.680 -2.812 -7.250 -6.206 -2.904 0.804 -1.402 -7.816 1.719 -7.400 -3.892 3.117 -7.735 -2.223 -0.062 -7.094 -1.069 -6.009 ML 82 80 6 85 6 1 1 150 314 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 151 315 -9.185 -7.914 -0.571 -7.893 -1.725 -6.106 -0.546 -1.134 0.463 0.567 D 84 80 6 85 6 0 0 145 309 -13.073 -11.771 -7.568 -8.250 -8.268 -0.018 IL 85 85 5 85 6 1 1 151 315 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 151 315 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 19 57 g c = = MP 87 86 6 91 6 2 2 150 314 -13.003 -12.942 -0.276 -11.718 -6.804 -2.603 -3.042 -3.253 -3.499 0.669 -5.465 -6.246 2.289 -3.541 -1.862 2.694 -6.070 -1.046 0.567 -5.532 -1.742 -4.614 ML 88 86 6 91 6 1 1 149 313 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 149 314 -9.503 -8.232 -0.182 -8.210 -3.344 -6.423 0.582 0.075 -0.453 -0.478 D 90 86 6 91 6 0 0 145 309 -14.915 -13.613 -9.410 -10.092 -10.110 -0.005 IL 91 91 5 91 6 1 1 150 314 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 150 314 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 20 56 c g = = MP 93 92 6 97 6 2 2 148 313 -12.775 -12.715 -0.415 -11.491 -5.590 -2.128 -6.943 -2.868 -6.869 1.106 -6.401 -7.596 2.924 -3.307 -6.966 2.073 -7.380 -0.324 -0.413 -6.894 -2.426 -5.623 ML 94 92 6 97 6 1 1 148 312 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 147 312 -8.307 -7.036 -2.945 -7.015 -0.278 -5.228 1.545 -1.760 -1.453 -1.248 D 96 92 6 97 6 0 0 145 309 -15.689 -14.387 -5.572 -10.866 -10.884 -0.032 IL 97 97 5 97 6 1 1 148 312 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 148 312 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 21 55 C G = = MP 99 98 6 103 4 2 2 147 311 -11.515 -11.722 -0.844 -1.176 -6.512 -6.092 -2.236 0.100 -5.638 -7.323 3.020 -6.219 -1.496 2.105 -6.951 -1.118 -0.124 -6.644 -1.130 -5.201 ML 100 98 6 103 4 1 1 147 311 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 146 310 -7.439 -6.468 -0.171 -3.396 0.326 -2.078 1.112 -1.520 D 102 98 6 103 4 0 0 145 309 -11.671 -11.352 -9.367 -0.003 IL 103 103 5 103 4 1 1 147 311 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 147 311 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - c - = - ML 105 104 6 107 3 1 1 145 310 -11.699 -0.033 -5.475 -1.681 0.968 0.314 -1.032 D 106 104 6 107 3 0 0 145 309 -14.328 -0.003 -8.719 IL 107 107 3 107 3 1 1 145 310 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - a - + - ML 108 107 3 110 3 1 1 145 309 -13.414 -0.011 -6.997 0.295 0.188 0.078 -0.789 D 109 107 3 110 3 0 0 122 286 -8.051 -3.564 -0.133 IL 110 110 3 110 3 1 1 144 309 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - c - + - ML 111 110 3 113 3 1 1 144 308 -0.618 -2.384 -2.674 -0.206 0.432 0.197 -0.647 D 112 110 3 113 3 0 0 91 255 -8.928 -1.884 -0.460 IL 113 113 3 113 3 1 1 146 311 -0.162 -3.237 -13.428 0.000 0.000 0.000 0.000 [ MATL 24 ] 52 - a - + - ML 114 113 3 116 3 1 1 11 29 -13.164 -0.001 -11.818 0.075 0.014 -0.070 -0.023 D 115 113 3 116 3 0 0 10 29 -12.261 -0.073 -4.344 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 53 - g - + - ML 117 116 3 119 3 1 1 9 28 -13.414 -1.749 -0.510 0.128 -0.070 0.420 -0.698 D 118 116 3 119 3 0 0 12 30 -8.051 -0.300 -2.443 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 54 - g - = - ML 120 119 3 122 2 1 1 1 1 * 0.000 -1.351 0.233 0.998 -1.198 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME Cren-eury-NC-Intron DESC This subset of noncanonical introns is used to build BHB intron covariance model. LENG 40 MAXL 179 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Mon Mar 27 16:07:38 2017 COM [1] cmbuild -F --hand --enone Cren-eury-BHB-noncan-nc.cm Cren-eury-BHB-noncan.sto NSEQ 165 EFFN 165.000000 CKSUM 3763066553 STATS LOCAL MSV -10.1355 0.83041 STATS LOCAL VITERBI -11.0086 0.83041 STATS LOCAL FORWARD -1.3009 0.83041 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57912 1.23387 1.08098 1.81146 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 0.00000 * 1 1.89911 1.17314 1.35290 1.26438 1 c = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 2 1.58577 1.60885 1.12197 1.31135 2 g = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 3 1.25163 1.93171 0.75106 2.33102 3 g = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 4 1.23027 1.32187 1.13712 2.11686 4 g = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 5 2.32417 1.21632 0.92667 1.56090 5 g = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 6 2.40770 0.87143 1.05960 1.93080 7 c = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 7 2.51394 1.25487 0.84039 1.59752 8 g = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 8 2.08949 1.53745 0.54204 2.52871 9 G = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 9 2.68617 1.20342 0.91263 1.46870 10 g = - < 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 10 0.92760 1.61526 1.34114 1.93716 12 a + - - 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 11 1.60974 1.29298 0.96371 1.93701 13 g + - - 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 12 0.36126 2.74795 2.46655 1.86906 15 A + - - 1.38629 1.38629 1.38629 1.38629 0.03161 7.42178 3.48933 1.46634 0.26236 1.09861 0.40547 13 3.48426 1.14765 0.63250 2.11464 17 G = - < 1.38629 1.38629 1.38629 1.38629 0.04015 7.39140 3.25084 1.46634 0.26236 3.97089 0.01904 14 2.12752 1.47002 0.58069 2.39212 18 G = - < 1.38629 1.38629 1.38629 1.38629 0.18403 7.35252 1.78708 1.46634 0.26236 1.60521 0.22420 15 2.12539 1.16199 0.79341 2.15893 19 g = - < 1.38629 1.38629 1.38629 1.38629 0.20007 7.18687 1.71163 1.46634 0.26236 2.21160 0.11600 16 1.93510 0.73153 1.15934 2.80137 20 c = - < 1.38629 1.38629 1.38629 1.38629 0.30408 7.02280 1.34206 1.46634 0.26236 3.83376 0.02187 17 2.49638 0.67561 1.13895 2.42345 21 C = - < 1.38629 1.38629 1.38629 1.38629 0.58114 6.73425 0.82201 1.46634 0.26236 3.11671 0.04531 18 2.55124 0.71535 1.16873 2.10182 22 c = - _ 1.38629 1.38629 1.38629 1.38629 0.02584 6.23076 3.74902 1.46634 0.26236 0.00172 6.36892 19 1.18195 1.25604 1.33253 1.93289 23 a + - _ 1.38629 1.38629 1.38629 1.38629 0.00882 7.41520 4.80559 1.46634 0.26236 2.63635 0.07432 20 1.52942 1.08712 1.25003 1.83472 24 c + - _ 1.38629 1.38629 1.38629 1.38629 1.64856 0.42935 1.85318 2.25058 0.11131 1.30245 0.31727 21 1.33397 1.37685 1.43499 1.40209 52 a + - _ 1.38629 1.38629 1.38629 1.38629 0.00143 7.24229 7.24229 1.46634 0.26236 0.04780 3.06454 22 1.29790 1.43450 1.09484 1.87038 53 g + - _ 1.38629 1.38629 1.38629 1.38629 1.21028 7.41520 0.35484 1.46634 0.26236 0.15460 1.94320 23 2.32267 1.22457 0.69481 2.21699 54 g = - _ 1.38629 1.38629 1.38629 1.38629 0.00394 6.23076 6.23076 1.46634 0.26236 1.14983 0.38081 24 2.39674 1.33895 0.59969 2.32400 55 G = - > 1.38629 1.38629 1.38629 1.38629 0.01490 6.77614 4.29439 1.46634 0.26236 1.08722 0.41121 25 2.84381 1.31047 0.73122 1.65661 56 g = - > 1.38629 1.38629 1.38629 1.38629 0.00177 7.03339 7.03339 1.46634 0.26236 0.86978 0.54308 26 2.07073 0.89456 1.11967 1.97523 57 c = - > 1.38629 1.38629 1.38629 1.38629 0.00147 7.21497 7.21497 1.46634 0.26236 0.31497 1.30863 27 2.41277 0.62275 1.40295 2.05496 58 C = - > 1.38629 1.38629 1.38629 1.38629 0.00126 7.37073 7.37073 1.46634 0.26236 1.22739 0.34681 28 2.17925 0.65780 1.11259 3.21454 59 C = - > 1.38629 1.38629 1.38629 1.38629 0.00124 7.38588 7.38588 1.46634 0.26236 0.03282 3.43311 29 2.68479 0.94788 0.67879 3.29759 61 G = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 30 2.97624 0.60060 1.43075 1.82384 62 C = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 31 2.37854 0.87381 0.91197 2.42791 63 c = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 32 2.65209 1.72294 0.65434 1.46460 64 G = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 33 0.08342 3.38416 3.58434 3.99656 66 A + - - 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 34 0.85366 1.93423 0.96538 3.02059 67 a + - - 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 35 1.55631 1.77024 1.16612 1.18019 69 g + - - 1.38629 1.38629 1.38629 1.38629 0.02336 3.79484 7.42178 0.05237 2.97546 1.09861 0.40547 36 2.01837 1.07069 1.05697 1.73246 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 37 1.94066 0.98319 1.11550 1.86741 72 c = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 38 2.08396 1.28812 0.96507 1.51950 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 39 1.85572 0.88097 1.30114 1.85114 74 c = - > 1.38629 1.38629 1.38629 1.38629 0.00120 7.42178 7.42178 1.46634 0.26236 1.09861 0.40547 40 1.23645 1.47917 1.06689 1.98281 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.00060 7.42118 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNA2.cm0000644000543100007160000013070311021467310016031 0ustar pchanlowelab### cove V2 72 nodes ### node 0 type 6 1 -1 0.00846 0.00000 0.00000 0.80479 0.02326 0.16350 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02778 0.00000 0.00000 0.50000 0.02778 0.44444 0.00137 0.00000 0.00000 0.33789 0.00000 0.66074 0.05556 0.02778 0.86111 0.05556 # INSL 0.33060 0.66530 0.00137 0.00273 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 3 2 -1 0.06250 0.56250 0.06250 0.25000 0.00000 0.06250 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.99503 0.00071 0.00213 0.00000 0.00142 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.33333 0.16667 0.16667 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 # INSL 0.20000 0.40000 0.20000 0.20000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.56676 0.06605 0.22443 0.14276 # MATR ### node 2 type 1 3 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00071 0.99647 0.00071 0.00071 0.00071 0.00071 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.09091 0.54545 0.09091 0.09091 0.09091 0.09091 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00281 0.00561 0.00351 0.14727 # MATP 0.00771 0.00281 0.07433 0.00210 # MATP 0.00070 0.57153 0.00070 0.08555 # MATP 0.08555 0.00070 0.00210 0.00701 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.11111 0.33333 0.11111 0.44444 # MATR ### node 3 type 1 4 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00070 0.00070 0.00070 0.12159 # MATP 0.00349 0.00140 0.32565 0.00280 # MATP 0.00140 0.37596 0.00210 0.03774 # MATP 0.11461 0.00070 0.00839 0.00210 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 4 type 1 5 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00349 0.00210 0.00140 0.16771 # MATP 0.00280 0.00140 0.27533 0.00210 # MATP 0.00070 0.29979 0.00210 0.05451 # MATP 0.16841 0.00140 0.01328 0.00349 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 5 type 1 6 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99507 0.00070 0.00141 0.00141 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.20000 0.20000 0.20000 0.40000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00839 0.00280 0.00140 0.18728 # MATP 0.00559 0.00489 0.20685 0.00210 # MATP 0.00210 0.29769 0.00140 0.05031 # MATP 0.17750 0.00070 0.04892 0.00210 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 6 type 1 7 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00280 0.00629 0.00420 0.27832 # MATP 0.00490 0.00490 0.23007 0.00280 # MATP 0.00210 0.20280 0.00210 0.04895 # MATP 0.16014 0.00140 0.04266 0.00559 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.20000 0.40000 0.20000 0.20000 # MATR ### node 7 type 1 8 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99507 0.00141 0.00070 0.00141 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.20000 0.20000 0.40000 0.20000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00140 0.00140 0.00210 0.19497 # MATP 0.00419 0.00140 0.19846 0.00349 # MATP 0.00070 0.19427 0.00070 0.02935 # MATP 0.28302 0.00210 0.05870 0.02376 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 8 type 1 9 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00212 0.00000 0.99365 0.00000 0.00071 0.00353 0.20000 0.00000 0.40000 0.00000 0.20000 0.20000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.14286 0.00000 0.71429 0.00000 0.00000 0.14286 0.25000 0.25000 0.25000 0.25000 # INSL 0.12500 0.37500 0.12500 0.37500 # INSR 0.00070 0.00280 0.00070 0.36014 # MATP 0.00070 0.00070 0.02867 0.00070 # MATP 0.00140 0.35245 0.00070 0.03916 # MATP 0.20699 0.00070 0.00140 0.00210 # MATP 0.20000 0.20000 0.20000 0.40000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 9 type 2 10 -1 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00636 0.00000 0.98799 0.00000 0.00565 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09091 0.09091 0.63636 0.18182 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04799 0.00423 0.01764 0.93013 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 10 type 2 11 -1 0.90000 0.00000 0.00000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99290 0.00000 0.00000 0.00000 0.00710 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.90909 0.00000 0.00000 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.38462 0.30769 0.15385 0.15385 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.64352 0.03402 0.30191 0.02055 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 0 12 25 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 4 13 -1 0.00070 0.99789 0.00070 0.00070 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 1 14 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00140 0.00140 0.00419 0.06988 # MATP 0.00140 0.00140 0.03494 0.00140 # MATP 0.00210 0.72746 0.00210 0.12229 # MATP 0.02446 0.00070 0.00280 0.00210 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 14 type 1 15 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00070 0.00140 0.00140 0.02935 # MATP 0.00140 0.00070 0.59399 0.00070 # MATP 0.00070 0.05311 0.00140 0.00210 # MATP 0.29140 0.00349 0.01677 0.00140 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 15 type 1 16 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00419 0.00419 0.00070 0.09154 # MATP 0.00769 0.00140 0.19147 0.00070 # MATP 0.00210 0.16422 0.00070 0.00349 # MATP 0.50943 0.00140 0.01607 0.00070 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 16 type 1 17 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00352 0.00000 0.99507 0.00000 0.00070 0.00070 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.09574 0.00349 0.00769 0.03634 # MATP 0.01048 0.00349 0.34172 0.00210 # MATP 0.12788 0.00978 0.00489 0.02096 # MATP 0.18169 0.00419 0.10273 0.04682 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 17 type 2 18 -1 0.71429 0.00000 0.14286 0.00000 0.14286 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00707 0.00000 0.99222 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.94770 0.00495 0.01979 0.02756 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 18 type 2 19 -1 0.87500 0.00000 0.06250 0.00000 0.06250 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11886 0.00000 0.88043 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.35562 0.01991 0.56899 0.05548 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 19 type 2 20 -1 0.98901 0.00000 0.00549 0.00000 0.00549 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.55609 0.00000 0.44310 0.00000 0.00081 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10887 0.21290 0.03871 0.63952 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 20 type 2 21 -1 0.06552 0.00000 0.93333 0.00000 0.00115 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00544 0.00000 0.75318 0.00000 0.24138 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00725 0.00000 0.96377 0.00000 0.02899 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09353 0.25180 0.02158 0.63309 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07790 0.23551 0.01630 0.67029 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.96721 0.00000 0.01639 0.00000 0.01639 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00074 0.00000 0.99853 0.00000 0.00074 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09111 0.03086 0.83248 0.04555 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.96721 0.00000 0.01639 0.00000 0.01639 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.13750 0.00000 0.86176 0.00000 0.00074 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05217 0.03527 0.83174 0.08082 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.01215 0.00000 0.96761 0.00000 0.02024 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00341 0.00000 0.50681 0.00000 0.48978 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00789 0.00000 0.75526 0.00000 0.23684 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16689 0.16032 0.06965 0.60315 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09702 0.10298 0.04426 0.75574 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 -1 -1 0.91667 0.00000 0.00000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99929 0.00000 0.00000 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.87722 0.01490 0.06388 0.04400 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 5 26 -1 0.00212 0.00000 0.99718 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.75000 0.00000 0.00000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99505 0.00000 0.00000 0.00000 0.00495 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.87500 0.00000 0.00000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.45730 0.03529 0.41637 0.09104 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 0 28 41 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 4 29 -1 0.00070 0.99648 0.00211 0.00070 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 1 30 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99436 0.00070 0.00070 0.00141 0.00211 0.12500 0.37500 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.14286 0.42857 0.14286 0.14286 0.00000 0.14286 0.20000 0.20000 0.20000 0.40000 # INSL 0.16667 0.50000 0.16667 0.16667 # INSR 0.01190 0.00420 0.00210 0.14206 # MATP 0.01470 0.00910 0.30861 0.01260 # MATP 0.00560 0.06018 0.00070 0.06578 # MATP 0.29531 0.00700 0.04759 0.01260 # MATP 0.16667 0.33333 0.33333 0.16667 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 30 type 1 31 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00070 0.00070 0.00070 0.16073 # MATP 0.00070 0.00140 0.34871 0.00419 # MATP 0.00070 0.08456 0.00070 0.02166 # MATP 0.32984 0.00070 0.03215 0.01188 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 31 type 1 32 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99578 0.00070 0.00141 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00210 0.00839 0.00070 0.23690 # MATP 0.00280 0.00140 0.13697 0.00070 # MATP 0.00070 0.35989 0.00140 0.00769 # MATP 0.23201 0.00140 0.00349 0.00349 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 32 type 1 33 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00140 0.00280 0.00070 0.09161 # MATP 0.00140 0.00070 0.20909 0.00140 # MATP 0.00070 0.59720 0.00070 0.05734 # MATP 0.01608 0.00140 0.01049 0.00699 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.20000 0.20000 0.20000 0.40000 # MATR ### node 33 type 1 34 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00070 0.00000 0.99789 0.00000 0.00070 0.00070 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00210 0.00419 0.00210 0.34591 # MATP 0.00140 0.00070 0.24948 0.00140 # MATP 0.00140 0.19846 0.00280 0.01188 # MATP 0.11950 0.00489 0.04333 0.01048 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99718 0.00000 0.00212 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.50000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02114 0.60395 0.00634 0.36857 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00070 0.02607 0.00070 0.97252 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05144 0.18323 0.33756 0.42777 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.30444 0.19662 0.20789 0.29105 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25793 0.24172 0.20648 0.29387 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.97179 0.00000 0.02750 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.05485 0.00000 0.94374 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.31180 0.18680 0.21910 0.28230 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.78365 0.00141 0.21071 0.00423 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99929 0.00000 0.00000 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.67935 0.17970 0.02467 0.11628 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 5 42 -1 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.14104 0.00000 0.85825 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.48273 0.13531 0.12333 0.25863 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 44 -1 0.99502 0.00000 0.00000 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99754 0.00000 0.00000 0.00000 0.00246 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.75000 0.00000 0.00000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.50000 0.16667 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.28033 0.02787 0.52295 0.16885 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 0 45 57 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 4 46 -1 0.84144 0.15081 0.00705 0.00070 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 1 47 -1 0.99583 0.00083 0.00083 0.00083 0.00083 0.00083 0.00457 0.97717 0.00457 0.00457 0.00457 0.00457 0.60000 0.06667 0.13333 0.06667 0.06667 0.06667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00437 0.00873 0.01310 0.13974 # MATP 0.00437 0.00437 0.10044 0.00437 # MATP 0.00437 0.54148 0.02620 0.05240 # MATP 0.07424 0.00873 0.00873 0.00437 # MATP 0.07692 0.15385 0.23077 0.53846 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 47 type 1 48 -1 0.99586 0.00083 0.00083 0.00083 0.00083 0.00083 0.03653 0.94521 0.00457 0.00457 0.00457 0.00457 0.14286 0.14286 0.28571 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00437 0.00873 0.00437 0.13100 # MATP 0.01747 0.00437 0.23581 0.00437 # MATP 0.00437 0.24454 0.00873 0.02183 # MATP 0.27948 0.00437 0.01310 0.01310 # MATP 0.20000 0.20000 0.40000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 48 type 1 49 -1 0.99588 0.00082 0.00082 0.00082 0.00082 0.00082 0.30660 0.65566 0.00472 0.00472 0.01415 0.01415 0.14286 0.14286 0.28571 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.12500 0.37500 0.12500 0.12500 0.12500 0.12500 0.14286 0.42857 0.14286 0.14286 0.00000 0.14286 0.16667 0.33333 0.16667 0.33333 # INSL 0.16667 0.16667 0.16667 0.50000 # INSR 0.00901 0.00450 0.00450 0.22072 # MATP 0.02252 0.01351 0.31982 0.00901 # MATP 0.00450 0.14414 0.00901 0.02252 # MATP 0.15766 0.00450 0.04505 0.00901 # MATP 0.20000 0.20000 0.40000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 49 type 1 50 -1 0.99609 0.00078 0.00078 0.00078 0.00078 0.00078 0.45946 0.51351 0.00676 0.00676 0.00676 0.00676 0.14286 0.14286 0.28571 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01266 0.00633 0.00633 0.07595 # MATP 0.01899 0.00633 0.34177 0.00633 # MATP 0.00633 0.17089 0.00633 0.05063 # MATP 0.18987 0.01899 0.06962 0.01266 # MATP 0.20000 0.20000 0.20000 0.40000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 50 type 1 51 -1 0.99628 0.00074 0.00074 0.00074 0.00074 0.00074 0.32099 0.62963 0.01235 0.01235 0.01235 0.01235 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01099 0.01099 0.01099 0.20879 # MATP 0.03297 0.01099 0.06593 0.01099 # MATP 0.01099 0.16484 0.01099 0.10989 # MATP 0.23077 0.02198 0.07692 0.01099 # MATP 0.40000 0.20000 0.20000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 51 type 1 52 -1 0.99635 0.00073 0.00073 0.00073 0.00073 0.00073 0.59649 0.33333 0.01754 0.01754 0.01754 0.01754 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01493 0.01493 0.01493 0.23881 # MATP 0.01493 0.01493 0.16418 0.01493 # MATP 0.02985 0.11940 0.07463 0.01493 # MATP 0.10448 0.01493 0.10448 0.04478 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 52 type 1 53 -1 0.85796 0.00000 0.12134 0.00000 0.00071 0.01999 0.04545 0.00000 0.45455 0.00000 0.04545 0.45455 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.02564 0.00000 0.94872 0.00000 0.00000 0.02564 0.25000 0.25000 0.25000 0.25000 # INSL 0.52500 0.07500 0.12500 0.27500 # INSR 0.02941 0.02941 0.02941 0.02941 # MATP 0.02941 0.02941 0.20588 0.02941 # MATP 0.05882 0.02941 0.02941 0.05882 # MATP 0.20588 0.02941 0.11765 0.05882 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 53 type 2 54 -1 0.99834 0.00000 0.00083 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00922 0.00000 0.98618 0.00000 0.00461 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21101 0.09174 0.24312 0.45413 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 2 55 -1 0.99834 0.00000 0.00083 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06019 0.00000 0.93519 0.00000 0.00463 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.27650 0.16590 0.05530 0.50230 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 55 type 2 56 -1 0.99836 0.00000 0.00082 0.00000 0.00082 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.37745 0.00000 0.60294 0.00000 0.01961 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.50000 0.00000 0.37500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.44444 0.11111 0.11111 0.33333 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.45854 0.09756 0.04878 0.39512 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 56 type 2 -1 -1 0.99923 0.00000 0.00000 0.00000 0.00077 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99213 0.00000 0.00000 0.00000 0.00787 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.36434 0.11628 0.27132 0.24806 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 5 58 -1 0.04866 0.00000 0.95063 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.01408 0.00000 0.95775 0.00000 0.02817 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00148 0.00000 0.45259 0.00000 0.54593 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00133 0.00000 0.98400 0.00000 0.01467 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06525 0.07989 0.05060 0.80426 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.31384 0.02147 0.53442 0.13027 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.16667 0.33333 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00070 0.99718 0.00070 0.00070 0.00070 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05642 0.57546 0.02186 0.34626 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 1 61 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99296 0.00070 0.00070 0.00070 0.00422 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.10000 0.60000 0.10000 0.10000 0.00000 0.10000 0.25000 0.25000 0.25000 0.25000 # INSL 0.11111 0.66667 0.11111 0.11111 # INSR 0.00699 0.00280 0.00210 0.27044 # MATP 0.00280 0.00070 0.15164 0.00140 # MATP 0.00070 0.36758 0.00140 0.12159 # MATP 0.04682 0.00559 0.01398 0.00349 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 61 type 1 62 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00070 0.99648 0.00070 0.00070 0.00070 0.00070 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00070 0.00280 0.00070 0.17191 # MATP 0.00210 0.00210 0.32075 0.00140 # MATP 0.00070 0.14885 0.00070 0.05311 # MATP 0.24319 0.00349 0.03354 0.01398 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 62 type 1 63 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00493 0.98733 0.00070 0.00070 0.00493 0.00141 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.08333 0.58333 0.08333 0.08333 0.08333 0.08333 0.16667 0.33333 0.16667 0.16667 0.00000 0.16667 0.40000 0.10000 0.10000 0.40000 # INSL 0.20000 0.40000 0.20000 0.20000 # INSR 0.00070 0.00839 0.00070 0.27813 # MATP 0.00070 0.00070 0.14116 0.00140 # MATP 0.00140 0.36618 0.00210 0.02516 # MATP 0.14046 0.00070 0.02236 0.00978 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 63 type 1 64 -1 0.58333 0.08333 0.08333 0.08333 0.08333 0.08333 0.04382 0.95194 0.00141 0.00141 0.00071 0.00071 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00070 0.01053 0.00070 0.16561 # MATP 0.00211 0.00140 0.01614 0.00211 # MATP 0.00211 0.73684 0.00070 0.01193 # MATP 0.04000 0.00140 0.00632 0.00140 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 64 type 1 65 -1 0.36620 0.00000 0.60563 0.00000 0.01408 0.01408 0.02519 0.00000 0.97333 0.00000 0.00074 0.00074 0.20000 0.00000 0.40000 0.00000 0.20000 0.20000 0.20000 0.00000 0.40000 0.00000 0.20000 0.20000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00073 0.00954 0.00073 0.04479 # MATP 0.00954 0.00367 0.00367 0.00220 # MATP 0.00073 0.89574 0.00147 0.00808 # MATP 0.01101 0.00220 0.00367 0.00220 # MATP 0.20000 0.40000 0.20000 0.20000 # MATL 0.20000 0.40000 0.20000 0.20000 # MATR ### node 65 type 2 66 -1 0.04918 0.00000 0.93443 0.00000 0.01639 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00147 0.00000 0.99706 0.00000 0.00147 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05878 0.03159 0.01323 0.89640 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 66 type 2 67 -1 0.16667 0.00000 0.66667 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.99788 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03955 0.02401 0.04802 0.88842 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 67 type 2 68 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.99788 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10085 0.80889 0.01763 0.07264 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 68 type 2 69 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00635 0.00000 0.98941 0.00000 0.00423 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.22222 0.44444 0.22222 0.11111 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.42666 0.02962 0.50000 0.04372 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.81818 0.00000 0.09091 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03404 0.00000 0.96525 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.91850 0.02268 0.01701 0.04181 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.93103 0.00000 0.05172 0.00000 0.01724 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06310 0.00000 0.92517 0.00000 0.01174 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.05000 0.00000 0.80000 0.00000 0.15000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.42857 0.23810 0.14286 0.19048 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.46114 0.08284 0.21334 0.24267 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 -1 -1 0.99286 0.00000 0.00000 0.00000 0.00714 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99922 0.00000 0.00000 0.00000 0.00078 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05308 0.13973 0.01015 0.79703 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-1415-ns.cm0000640000543100007160000016417612131102003017445 0ustar pchanlowelabINFERNAL1/a [1.1rc2 | December 2012] NAME tRNA1415G STATES 274 NODES 92 CLEN 90 W 526 ALPH RNA RF yes CONS yes MAP yes DATE Tue Sep 18 19:30:16 2012 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone --noss TRNAinf-ns-nc.cm ../trna1415G.sto COM [2] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmcalibrate --hfile cmcalibrate_files/TRNAinf-ns.hfile --sfile cmcalibrate_files/TRNAinf-ns.sfile --qqfile cmcalibrate_files/TRNAinf-ns.qqfile --ffile cmcalibrate_files/TRNAinf-ns.ffile --seed 208 TRNAinf-ns.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1415 EFFN 1415.000000 CKSUM 1444642440 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.1756 0.72699 ECMLC 0.54212 -11.74058 -0.74984 1600000 464368 0.002584 ECMGC 0.41338 -9.29374 0.12170 1600000 19606 0.020402 ECMLI 0.48319 -11.24615 0.51481 1600000 352501 0.003404 ECMGI 0.43508 -6.70771 2.21691 1600000 19426 0.020591 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 526 1093 -15.600 -15.807 -0.011 -7.049 IL 1 1 2 1 4 36 56 529 1096 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 36 56 528 1095 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 3 - G - = - ML 3 2 3 5 3 35 55 527 1094 -13.780 -0.000 -13.780 -1.012 -1.366 1.499 -1.785 D 4 2 3 5 3 33 53 526 1093 -16.737 -0.027 -5.771 IL 5 5 3 5 3 35 56 530 1097 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 4 - g - = - ML 6 5 3 8 3 34 54 526 1093 -13.791 -0.000 -13.791 -0.698 0.447 0.589 -0.953 D 7 5 3 8 3 30 50 523 1090 -11.551 -1.585 -0.585 IL 8 8 3 8 3 35 55 529 1096 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 5 - g - = - ML 9 8 3 11 3 33 53 525 1092 -13.791 -0.000 -13.791 -0.043 0.082 0.096 -0.148 D 10 8 3 11 3 29 49 522 1089 -11.551 -1.585 -0.585 IL 11 11 3 11 3 34 54 528 1095 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 6 - g - = - ML 12 11 3 14 3 32 52 524 1091 -7.030 -0.012 -11.469 -0.139 -0.164 0.427 -0.226 D 13 11 3 14 3 29 49 522 1089 -11.551 -1.585 -0.585 IL 14 14 3 14 3 32 52 524 1091 -9.073 -0.003 -16.717 0.000 0.000 0.000 0.000 [ MATL 5 ] 8 - g - = - ML 15 14 3 17 3 31 51 523 1090 -13.790 -0.000 -13.790 0.247 -0.219 0.348 -0.553 D 16 14 3 17 3 29 48 521 1088 -12.773 -0.486 -1.807 IL 17 17 3 17 3 32 52 526 1093 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 9 - u - = - ML 18 17 3 20 3 30 50 522 1089 -7.164 -0.010 -13.791 -0.608 -0.817 0.276 0.647 D 19 17 3 20 3 28 47 520 1087 -11.551 -1.585 -0.585 IL 20 20 3 20 3 30 50 522 1089 -8.938 -0.003 -16.582 0.000 0.000 0.000 0.000 [ MATL 7 ] 11 - g - = - ML 21 20 3 23 3 29 49 521 1088 -13.791 -0.012 -6.989 0.522 -2.722 0.704 -0.352 D 22 20 3 23 3 27 47 519 1086 -11.551 -1.585 -0.585 IL 23 23 3 23 3 30 50 524 1091 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 12 - U - + - ML 24 23 3 26 3 28 48 520 1087 -5.627 -0.037 -7.676 -2.145 -4.851 -2.823 1.847 D 25 23 3 26 3 27 47 519 1086 -16.794 -0.026 -5.828 IL 26 26 3 26 3 28 48 520 1087 -10.470 -0.001 -18.114 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - A - + - ML 27 26 3 29 3 27 47 519 1086 -5.166 -0.041 -13.784 1.151 -3.361 0.620 -2.777 D 28 26 3 29 3 24 45 518 1085 -16.111 -0.041 -5.145 IL 29 29 3 29 3 27 47 519 1086 -10.937 -0.001 -18.581 0.000 0.000 0.000 0.000 [ MATL 10 ] 16 - G - = - ML 30 29 3 32 3 26 46 518 1085 -13.791 -0.000 -13.791 -1.845 -1.586 1.685 -2.538 D 31 29 3 32 3 21 41 515 1082 -11.551 -1.585 -0.585 IL 32 32 3 32 3 26 47 521 1088 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 17 - C - = - ML 33 32 3 35 3 25 45 517 1084 -13.791 -0.000 -13.791 -3.083 1.337 -1.808 0.097 D 34 32 3 35 3 20 40 514 1081 -11.551 -1.585 -0.585 IL 35 35 3 35 3 26 46 520 1087 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 18 - U - = - ML 36 35 3 38 3 24 44 516 1083 -13.791 -0.000 -13.791 -1.466 0.060 -0.957 1.057 D 37 35 3 38 3 20 40 513 1080 -11.551 -1.585 -0.585 IL 38 38 3 38 3 25 45 519 1086 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 19 - c - = - ML 39 38 3 41 3 23 43 515 1082 -13.791 -0.003 -8.783 -0.720 0.380 0.029 0.099 D 40 38 3 41 3 20 39 512 1079 -11.551 -1.585 -0.585 IL 41 41 3 41 3 24 44 518 1085 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 20 - A - + - ML 42 41 3 44 3 22 42 514 1081 -13.788 -0.010 -7.161 1.845 -5.518 -2.985 -1.941 D 43 41 3 44 3 19 39 511 1077 -15.060 -5.094 -0.043 IL 44 44 3 44 3 23 43 517 1084 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 21 - G - + - ML 45 44 3 47 3 21 41 513 1080 -13.778 -0.167 -3.190 0.337 -2.477 1.217 -2.100 D 46 44 3 47 3 19 39 510 1077 -17.010 -7.044 -0.011 IL 47 47 3 47 3 23 42 516 1083 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 22 - U - + - ML 48 47 3 50 3 21 40 512 1079 -13.610 -1.577 -0.589 -1.334 -0.076 -3.072 1.342 D 49 47 3 50 3 19 38 510 1077 -20.671 -10.705 -0.001 IL 50 50 3 50 3 23 43 516 1083 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 23 - U - + - ML 51 50 3 53 3 21 40 512 1079 -1.783 -0.503 -8.063 -1.746 0.094 -3.224 1.338 D 52 50 3 53 3 19 38 510 1077 -23.251 -0.073 -4.334 IL 53 53 3 53 3 21 40 512 1079 -3.214 -0.165 -20.380 0.000 0.000 0.000 0.000 [ MATL 18 ] 26 - G - + - ML 54 53 3 56 3 20 39 511 1078 -13.738 -0.000 -13.738 -1.513 -3.206 1.760 -2.697 D 55 53 3 56 3 17 36 507 1074 -18.962 -8.996 -0.003 IL 56 56 3 56 3 21 40 514 1081 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 27 - G - + - ML 57 56 3 59 3 19 38 510 1077 -13.738 -0.196 -2.975 -2.015 -3.163 1.752 -1.880 D 58 56 3 59 3 17 36 507 1074 -18.962 -5.134 -0.042 IL 59 59 3 59 3 21 40 513 1080 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 28 - U - + - ML 60 59 3 62 3 19 37 509 1076 -0.732 -1.337 -8.887 -1.866 -1.311 -2.773 1.667 D 61 59 3 62 3 17 36 507 1074 -21.091 -0.011 -6.981 IL 62 62 3 62 3 19 37 508 1075 -1.746 -0.511 -23.288 0.000 0.000 0.000 0.000 [ MATL 21 ] 32 - A - + - ML 63 62 3 65 3 18 36 507 1074 -13.787 -0.000 -13.787 1.788 -3.917 -2.017 -2.101 D 64 62 3 65 3 13 31 506 1073 -15.389 -0.069 -4.423 IL 65 65 3 65 3 15 35 510 1077 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 33 - a - = - ML 66 65 3 68 3 17 35 506 1073 -13.791 -0.000 -13.791 0.820 -3.479 0.704 -0.954 D 67 65 3 68 3 11 28 503 1070 -11.551 -1.585 -0.585 IL 68 68 3 68 3 15 35 509 1076 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 34 - a - = - ML 69 68 3 71 3 16 34 505 1072 -13.791 -0.000 -13.791 0.981 -0.948 0.224 -1.555 D 70 68 3 71 3 11 27 503 1070 -11.551 -1.585 -0.585 IL 71 71 3 71 3 15 34 509 1075 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 35 - G - = - ML 72 71 3 74 3 15 33 504 1071 -13.791 -0.000 -13.791 -0.013 -1.805 1.379 -3.042 D 73 71 3 74 3 10 27 502 1069 -11.551 -1.585 -0.585 IL 74 74 3 74 3 14 33 508 1074 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 36 - C - = - ML 75 74 3 77 3 14 32 503 1070 -13.791 -0.008 -7.602 -2.352 1.472 -1.485 -0.573 D 76 74 3 77 3 10 27 501 1068 -11.551 -1.585 -0.585 IL 77 77 3 77 3 14 32 507 1073 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - g - + - ML 78 77 3 80 3 14 32 502 1069 -6.247 -0.019 -13.783 0.385 -2.866 0.834 -0.369 D 79 77 3 80 3 10 26 501 1068 -16.194 -0.039 -5.228 IL 80 80 3 80 3 15 32 502 1069 -9.852 -0.002 -17.496 0.000 0.000 0.000 0.000 [ MATL 27 ] 39 - u - = - ML 81 80 3 83 3 14 31 501 1068 -7.174 -0.010 -13.791 -0.897 0.539 -0.880 0.553 D 82 80 3 83 3 7 24 498 1065 -11.551 -1.585 -0.585 IL 83 83 3 83 3 14 31 501 1068 -8.928 -0.003 -16.572 0.000 0.000 0.000 0.000 [ MATL 28 ] 41 - c - = - ML 84 83 3 86 3 13 30 500 1067 -13.791 -0.000 -13.791 -0.830 0.746 -1.663 0.531 D 85 83 3 86 3 7 23 497 1064 -11.551 -1.585 -0.585 IL 86 86 3 86 3 12 28 503 1070 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 42 - g - = - ML 87 86 3 89 3 13 29 499 1066 -13.791 -0.001 -10.983 0.045 -0.980 0.757 -0.376 D 88 86 3 89 3 7 23 497 1064 -11.551 -1.585 -0.585 IL 89 89 3 89 3 11 28 502 1069 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 43 - G - = - ML 90 89 3 92 3 13 28 498 1065 -13.790 -0.000 -13.790 -1.291 -0.782 1.404 -1.459 D 91 89 3 92 3 6 22 496 1063 -13.136 -0.363 -2.171 IL 92 92 3 92 3 10 27 501 1068 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 44 - a - = - ML 93 92 3 95 3 12 28 497 1064 -13.791 -0.000 -13.791 0.662 -0.482 -0.012 -0.494 D 94 92 3 95 3 6 20 492 1059 -11.551 -1.585 -0.585 IL 95 95 3 95 3 10 26 500 1067 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 45 - C - + - ML 96 95 3 98 3 12 27 496 1063 -6.954 -0.012 -13.791 -3.823 1.412 -5.758 0.322 D 97 95 3 98 3 6 20 489 1056 -11.551 -1.585 -0.585 IL 98 98 3 98 3 13 27 496 1063 -9.150 -0.003 -16.793 0.000 0.000 0.000 0.000 [ MATL 33 ] 47 - U - + - ML 99 98 3 101 3 12 26 495 1062 -13.791 -0.000 -13.791 -11.255 -3.938 -11.607 1.976 D 100 98 3 101 3 5 19 486 1053 -11.551 -1.585 -0.585 IL 101 101 3 101 3 9 26 498 1065 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 48 - u - * - ML 102 101 3 104 3 12 25 494 1061 -13.791 -0.000 -13.791 -2.590 -0.246 0.282 0.827 D 103 101 3 104 3 5 19 481 1048 -11.551 -1.585 -0.585 IL 104 104 3 104 3 9 25 497 1064 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 49 - a - * - ML 105 104 3 107 3 11 24 493 1060 -13.791 -0.000 -13.791 0.463 -0.299 -0.204 -0.088 D 106 104 3 107 3 5 18 474 1040 -11.551 -1.585 -0.585 IL 107 107 3 107 3 8 24 496 1063 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 50 - a - * - ML 108 107 3 110 3 11 23 492 1059 -13.791 -0.000 -13.791 0.618 -0.776 -0.581 0.278 D 109 107 3 110 3 5 18 457 1024 -11.551 -1.585 -0.585 IL 110 110 3 110 3 8 24 495 1062 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 51 - A - + - ML 111 110 3 113 3 10 22 491 1058 -2.145 -0.370 -13.791 1.584 -6.835 -0.042 -5.554 D 112 110 3 113 3 4 17 289 856 -11.551 -1.585 -0.585 IL 113 113 3 113 3 12 25 536 1103 -0.047 -4.967 -26.579 0.000 0.000 0.000 0.000 [ MATL 38 ] 101 - A - + - ML 114 113 3 116 3 9 21 84 153 -13.791 -0.000 -13.791 1.527 -0.872 -2.859 -1.206 D 115 113 3 116 3 4 16 82 152 -11.551 -1.585 -0.585 IL 116 116 3 116 3 8 22 103 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 102 - u - = - ML 117 116 3 119 3 8 20 83 152 -13.791 -0.000 -13.791 -0.848 -0.059 -0.215 0.699 D 118 116 3 119 3 4 16 81 151 -11.551 -1.585 -0.585 IL 119 119 3 119 3 8 21 102 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 103 - C - = - ML 120 119 3 122 3 7 19 82 151 -13.791 -0.000 -13.791 -3.901 1.288 -0.210 -0.676 D 121 119 3 122 3 3 16 80 150 -11.551 -1.585 -0.585 IL 122 122 3 122 3 7 20 101 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 104 - c - = - ML 123 122 3 125 3 6 18 81 150 -13.791 -0.000 -13.791 -0.416 0.771 -0.961 0.044 D 124 122 3 125 3 3 15 79 149 -11.551 -1.585 -0.585 IL 125 125 3 125 3 6 19 100 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 105 - g - = - ML 126 125 3 128 3 5 17 80 149 -7.173 -0.018 -7.596 0.372 -1.985 0.837 -0.584 D 127 125 3 128 3 3 15 78 148 -11.551 -1.585 -0.585 IL 128 128 3 128 3 5 17 80 149 -8.929 -0.003 -16.573 0.000 0.000 0.000 0.000 [ MATL 43 ] 107 - g - = - ML 129 128 3 131 3 4 16 79 148 -13.783 -0.000 -13.783 0.448 -1.869 0.540 -0.140 D 130 128 3 131 3 3 15 78 147 -16.200 -0.039 -5.234 IL 131 131 3 131 3 5 17 98 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 108 - a - + - ML 132 131 3 134 3 3 15 78 147 -13.791 -0.438 -1.935 0.644 -0.472 -1.335 0.401 D 133 131 3 134 3 2 14 79 149 -11.551 -1.585 -0.585 IL 134 134 3 134 3 3 15 95 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 109 - g - + - ML 135 134 3 137 3 2 13 74 143 -6.503 -4.675 -0.074 0.160 -1.107 0.825 -0.627 D 136 134 3 137 3 3 16 80 150 -21.823 -0.017 -6.394 IL 137 137 3 137 3 5 17 81 151 -9.163 -0.003 -16.807 0.000 0.000 0.000 0.000 [ MATL 46 ] 111 - G - = - ML 138 137 3 140 3 4 16 80 150 -12.033 -0.021 -6.141 -0.253 -0.685 1.001 -0.895 D 139 137 3 140 3 1 12 71 140 -23.251 -13.286 -0.000 IL 140 140 3 140 3 5 17 99 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 112 - u - = - ML 141 140 3 143 3 3 15 79 149 -12.013 -0.054 -4.778 -0.973 0.207 0.187 0.261 D 142 140 3 143 3 1 12 71 140 -23.260 -13.294 -0.000 IL 143 143 3 143 3 4 17 98 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 113 - g - = - ML 144 143 3 146 3 2 14 78 148 -5.121 -0.364 -2.365 -0.159 0.084 0.172 -0.123 D 145 143 3 146 3 1 12 71 140 -23.281 -13.315 -0.000 IL 146 146 3 146 3 3 15 79 148 -9.150 -0.003 -16.794 0.000 0.000 0.000 0.000 [ MATL 49 ] 115 - c - = - ML 147 146 3 149 3 2 14 78 147 -11.648 -0.723 -1.344 -2.152 0.485 0.346 0.144 D 148 146 3 149 3 1 12 71 140 -23.386 -13.421 -0.000 IL 149 149 3 149 3 4 16 98 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 116 - u - = - ML 150 149 3 152 3 2 14 78 148 -10.926 -0.508 -1.754 -0.265 -1.319 0.285 0.631 D 151 149 3 152 3 1 12 71 140 -23.544 -13.578 -0.000 IL 152 152 3 152 3 4 16 97 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 117 - u - = - ML 153 152 3 155 3 2 14 78 147 -10.420 -0.649 -1.468 -0.233 0.180 -0.676 0.476 D 154 152 3 155 3 1 12 71 140 -23.610 -13.644 -0.000 IL 155 155 3 155 3 5 18 98 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 118 - C - = - ML 156 155 3 158 3 5 17 77 147 -9.775 -0.003 -9.775 -6.054 1.111 -1.033 0.419 D 157 155 3 158 3 1 12 71 140 -23.665 -2.030 -0.405 IL 158 158 3 158 3 5 17 96 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 119 - u - + - ML 159 158 3 161 3 4 16 75 145 -12.013 -0.011 -7.130 -0.486 -1.390 0.146 0.846 D 160 158 3 161 3 1 12 66 136 -23.260 -13.294 -0.000 IL 161 161 3 161 3 4 17 95 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 120 - u - + - ML 162 161 3 164 3 3 15 74 143 -12.003 -0.038 -5.266 -0.017 0.026 -2.215 0.831 D 163 161 3 164 3 1 12 66 136 -23.264 -13.298 -0.000 IL 164 164 3 164 3 4 16 95 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 121 - u - + - ML 165 164 3 167 3 2 14 73 142 -3.167 -0.954 -1.425 0.667 -0.643 -2.658 0.690 D 166 164 3 167 3 1 12 66 136 -23.279 -13.313 -0.000 IL 167 167 3 167 3 3 15 75 144 -1.229 -0.802 -19.563 0.000 0.000 0.000 0.000 [ MATL 56 ] 125 - a - + - ML 168 167 3 170 3 2 13 73 142 -1.950 -2.507 -0.823 0.706 -0.659 0.038 -0.496 D 169 167 3 170 3 1 12 66 136 -23.476 -6.064 -0.022 IL 170 170 3 170 3 3 16 75 144 -11.664 -0.000 -19.307 0.000 0.000 0.000 0.000 [ MATL 57 ] 127 - g - = - ML 171 170 3 173 3 2 15 74 143 -10.305 -0.284 -2.491 0.441 -3.117 0.966 -0.802 D 172 170 3 173 3 1 12 66 135 -23.622 -5.290 -0.037 IL 173 173 3 173 3 5 18 94 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 128 - g - = - ML 174 173 3 176 3 4 17 73 142 -10.420 -0.026 -5.860 -0.070 -1.197 0.715 -0.045 D 175 173 3 176 3 1 12 65 135 -23.610 -4.472 -0.067 IL 176 176 3 176 3 5 18 93 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 129 - u - = - ML 177 176 3 179 3 5 16 71 140 -10.910 -0.002 -10.910 0.229 -0.770 -0.522 0.628 D 178 176 3 179 3 1 12 65 134 -23.546 -3.276 -0.157 IL 179 179 3 179 3 5 17 92 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 130 - g - = - ML 180 179 3 182 3 4 15 69 138 -4.665 -0.058 -11.638 -0.149 0.256 0.656 -1.609 D 181 179 3 182 3 1 12 64 133 -23.389 -3.830 -0.105 IL 182 182 3 182 3 4 15 69 138 -9.287 -0.002 -16.930 0.000 0.000 0.000 0.000 [ MATL 61 ] 132 - g - = - ML 183 182 3 185 3 3 14 68 137 -11.951 -0.001 -11.951 -0.342 0.080 0.301 -0.118 D 184 182 3 185 3 1 12 63 133 -23.284 -6.084 -0.021 IL 185 185 3 185 3 3 15 90 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 133 - a - = - ML 186 185 3 188 3 2 13 66 135 -12.005 -0.001 -12.005 0.314 0.179 0.098 -0.851 D 187 185 3 188 3 1 12 63 132 -23.263 -13.297 -0.000 IL 188 188 3 188 3 2 14 89 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 134 - c - = - ML 189 188 3 191 3 1 12 65 134 -12.005 -0.620 -1.518 -1.804 0.821 -0.097 0.017 D 190 188 3 191 3 1 12 63 132 -23.263 -0.011 -7.018 IL 191 191 3 191 3 2 14 89 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 135 - G - + - ML 192 191 3 194 3 1 12 63 133 -0.979 -1.023 -10.579 0.191 -3.657 1.162 -0.883 D 193 191 3 194 3 0 10 62 131 -20.528 -0.002 -9.563 IL 194 194 3 194 3 2 12 63 132 -4.633 -0.059 -22.674 0.000 0.000 0.000 0.000 [ MATL 65 ] 139 - C - + - ML 195 194 3 197 3 1 10 62 131 -13.790 -0.000 -13.790 -2.125 1.248 -2.231 0.243 D 196 194 3 197 3 0 7 61 130 -13.328 -0.312 -2.362 IL 197 197 3 197 3 1 11 86 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 140 - G - = - ML 198 197 3 200 3 1 9 60 130 -13.791 -0.000 -13.791 0.014 -0.937 1.176 -2.263 D 199 197 3 200 3 0 5 60 129 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 10 85 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 141 - u - = - ML 201 200 3 203 3 1 8 59 128 -13.791 -0.000 -13.791 -0.362 0.179 -0.499 0.467 D 202 200 3 203 3 0 5 58 127 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 9 84 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 142 - g - = - ML 204 203 3 206 3 1 7 58 127 -6.853 -0.019 -7.932 0.072 -1.449 0.928 -0.555 D 205 203 3 206 3 0 4 55 125 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 8 58 127 -9.251 -0.002 -16.895 0.000 0.000 0.000 0.000 [ MATL 69 ] 144 - G - = - ML 207 206 3 209 3 1 7 57 126 -13.785 -0.051 -4.852 -0.640 -3.802 1.616 -2.175 D 208 206 3 209 3 0 4 54 123 -15.874 -5.908 -0.024 IL 209 209 3 209 3 1 8 82 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 145 - G - = - ML 210 209 3 212 3 1 6 56 125 -13.734 -0.042 -5.126 -2.270 -4.069 1.876 -3.982 D 211 209 3 212 3 0 4 54 123 -19.063 -0.783 -1.256 IL 212 212 3 212 3 1 7 81 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 146 - U - + - ML 213 212 3 215 3 1 5 54 124 -6.804 -0.014 -11.263 -1.976 -3.343 -4.313 1.847 D 214 212 3 215 3 0 4 53 123 -19.241 -0.069 -4.414 IL 215 215 3 215 3 1 5 54 124 -9.236 -0.002 -16.880 0.000 0.000 0.000 0.000 [ MATL 72 ] 148 - U - + - ML 216 215 3 218 3 1 4 53 123 -13.788 -0.002 -10.005 -2.453 -3.259 -2.615 1.828 D 217 215 3 218 3 0 2 52 121 -15.078 -0.086 -4.112 IL 218 218 3 218 3 1 5 79 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 149 - C - + - ML 219 218 3 221 3 1 3 52 121 -13.789 -0.001 -11.221 -1.326 1.701 -3.930 -1.819 D 220 218 3 221 3 0 0 51 120 -13.944 -0.196 -2.979 IL 221 221 3 221 3 1 3 78 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 150 - g - + - ML 222 221 3 224 3 1 2 51 120 -6.125 -0.037 -6.495 0.845 -2.907 0.887 -2.177 D 223 221 3 224 3 0 0 49 118 -12.953 -0.419 -1.987 IL 224 224 3 224 3 1 2 51 120 -9.981 -0.001 -17.625 0.000 0.000 0.000 0.000 [ MATL 75 ] 152 - A - + - ML 225 224 3 227 3 1 1 50 119 -13.775 -0.045 -5.027 1.861 -3.056 -3.269 -2.805 D 226 224 3 227 3 0 0 46 115 -17.279 -7.314 -0.009 IL 227 227 3 227 3 1 2 76 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 153 - a - + - ML 228 227 3 230 3 1 1 48 118 -5.116 -0.130 -4.126 0.905 -1.466 -0.800 0.253 D 229 227 3 230 3 0 0 46 115 -19.165 -5.393 -0.035 IL 230 230 3 230 3 1 2 49 118 -3.294 -0.155 -18.731 0.000 0.000 0.000 0.000 [ MATL 77 ] 156 - U - + - ML 231 230 3 233 3 1 1 47 117 -13.646 -0.014 -6.712 -2.736 -0.499 -4.744 1.634 D 232 230 3 233 3 0 0 46 115 -20.367 -0.549 -1.661 IL 233 233 3 233 3 1 2 74 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 157 - C - = - ML 234 233 3 236 3 1 2 46 115 -13.734 -0.000 -13.734 -3.830 1.865 -5.317 -1.938 D 235 233 3 236 3 0 0 44 114 -19.069 -0.164 -3.219 IL 236 236 3 236 3 1 1 73 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 158 - C - = - ML 237 236 3 239 3 1 1 44 114 -7.099 -0.011 -13.785 -2.379 1.601 -3.274 -0.576 D 238 236 3 239 3 0 0 43 113 -15.874 -0.049 -4.908 IL 239 239 3 239 3 1 2 44 114 -8.997 -0.003 -16.641 0.000 0.000 0.000 0.000 [ MATL 80 ] 160 - c - = - ML 240 239 3 242 3 1 1 43 113 -13.791 -0.000 -13.791 -1.029 0.901 -0.940 0.166 D 241 239 3 242 3 0 0 44 113 -11.551 -1.585 -0.585 IL 242 242 3 242 3 1 1 71 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 81 ] 161 - g - = - ML 243 242 3 245 3 1 1 42 111 -6.046 -0.022 -13.791 0.272 -0.746 0.290 -0.037 D 244 242 3 245 3 0 0 40 109 -11.551 -1.585 -0.585 IL 245 245 3 245 3 1 2 42 111 -10.062 -0.001 -17.706 0.000 0.000 0.000 0.000 [ MATL 82 ] 163 - c - = - ML 246 245 3 248 3 1 1 41 110 -6.865 -0.013 -11.074 -2.510 0.883 -0.812 0.496 D 247 245 3 248 3 0 0 40 109 -11.551 -1.585 -0.585 IL 248 248 3 248 3 1 1 41 110 -9.239 -0.002 -16.883 0.000 0.000 0.000 0.000 [ MATL 83 ] 165 - u - = - ML 249 248 3 251 3 1 1 40 109 -13.790 -0.000 -13.790 -0.369 0.588 -2.663 0.645 D 250 248 3 251 3 0 0 40 109 -13.066 -0.383 -2.100 IL 251 251 3 251 3 1 1 68 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 84 ] 166 - u - = - ML 252 251 3 254 3 1 1 38 107 -13.791 -0.000 -13.791 -0.136 0.034 -0.310 0.333 D 253 251 3 254 3 0 0 40 109 -11.551 -1.585 -0.585 IL 254 254 3 254 3 1 1 67 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 85 ] 167 - u - = - ML 255 254 3 257 3 1 1 36 106 -13.791 -0.000 -13.791 -0.899 0.231 0.023 0.350 D 256 254 3 257 3 0 0 39 108 -11.551 -1.585 -0.585 IL 257 257 3 257 3 1 1 66 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 86 ] 168 - u - = - ML 258 257 3 260 3 1 1 34 103 -13.791 -0.000 -13.791 -0.489 0.129 0.050 0.212 D 259 257 3 260 3 0 0 37 107 -11.551 -1.585 -0.585 IL 260 260 3 260 3 1 1 65 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 87 ] 169 - u - = - ML 261 260 3 263 3 1 1 32 101 -13.791 -0.000 -13.791 -0.210 -0.106 0.136 0.148 D 262 260 3 263 3 0 0 36 105 -11.551 -1.585 -0.585 IL 263 263 3 263 3 1 1 64 133 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 88 ] 170 - g - = - ML 264 263 3 266 3 1 1 28 97 -13.791 -0.000 -13.791 -0.983 0.425 0.445 -0.340 D 265 263 3 266 3 0 0 33 102 -11.551 -1.585 -0.585 IL 266 266 3 266 3 1 1 63 132 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 89 ] 171 - C - = - ML 267 266 3 269 3 1 1 4 7 -6.064 -0.040 -6.295 -1.851 1.380 -1.413 -0.425 D 268 266 3 269 3 0 0 3 5 -11.551 -1.585 -0.585 IL 269 269 3 269 3 1 1 4 6 -10.044 -0.001 -17.688 0.000 0.000 0.000 0.000 [ MATL 90 ] 173 - A - + - ML 270 269 3 272 2 1 1 1 1 * 0.000 1.133 -2.010 -0.004 -0.832 D 271 269 3 272 2 0 0 0 0 * 0.000 IL 272 272 3 272 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 91 ] - - - - - - E 273 272 3 -1 0 0 0 0 0 // HMMER3/f [i1.1rc2 | December 2012] NAME tRNA1415G LENG 90 MAXL 526 ALPH RNA RF yes MM no CONS yes CS yes MAP no DATE Tue Sep 18 19:30:16 2012 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone --noss TRNAinf-ns-nc.cm ../trna1415G.sto COM [2] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone --noss TRNAinf-ns-nc.cm ../trna1415G.sto NSEQ 1415 EFFN 1415.000000 STATS LOCAL MSV -9.2031 0.72699 STATS LOCAL VITERBI -10.0855 0.72699 STATS LOCAL FORWARD -2.7871 0.72699 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42726 1.47091 1.30070 1.35488 1.38629 1.38629 1.38629 1.38629 0.00760 10.81323 4.88568 0.39730 1.11515 0.00000 * 1 2.08800 2.33330 0.34736 2.62367 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55150 9.55150 1.46634 0.26236 0.01848 4.00044 2 1.87030 1.07642 0.97824 2.04689 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 3 1.41627 1.32967 1.31981 1.48885 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 4 1.48263 1.50018 1.09031 1.54291 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00804 4.87287 7.94994 0.00186 6.28874 1.09861 0.40547 5 1.21539 1.53826 1.14498 1.76948 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55874 9.55874 1.46634 0.26236 0.33657 1.25251 6 1.80768 1.95247 1.19531 0.93794 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00707 4.96553 9.55902 0.00204 6.19542 1.09861 0.40547 7 1.02442 3.27276 0.89827 1.63056 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00798 9.55902 4.84407 1.46634 0.26236 1.09861 0.40547 8 2.87333 4.74847 3.34286 0.10593 - U + - : 1.38629 1.38629 1.38629 1.38629 0.02544 3.90054 5.32053 0.00071 7.25748 0.01776 4.03957 9 0.58863 3.71592 0.95684 3.31107 - A + - : 1.38629 1.38629 1.38629 1.38629 0.02831 3.58104 9.55423 0.00051 7.58075 0.02867 3.56618 10 2.66499 2.48589 0.21803 3.14538 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 11 3.52358 0.45937 2.63965 1.31886 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 12 2.40270 1.34475 2.04936 0.65373 - U = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 13 1.88532 1.12292 1.36614 1.31750 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00234 9.55902 6.08819 1.46634 0.26236 1.09861 0.40547 14 0.10777 5.21086 3.45515 2.73143 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00708 9.55682 4.96389 1.46634 0.26236 3.53116 0.02971 15 1.15280 3.10350 0.54290 2.84223 - G + - : 1.38629 1.38629 1.38629 1.38629 0.11610 9.54988 2.21143 1.46634 0.26236 4.88240 0.00761 16 2.31117 1.43876 3.51596 0.45584 - U + - : 1.38629 1.38629 1.38629 1.38629 1.09301 9.43394 0.40840 1.46634 0.26236 7.42015 0.00060 17 2.59664 1.32146 3.62116 0.45890 - U + - : 1.38629 1.38629 1.38629 1.38629 0.34860 1.23587 5.58861 0.11404 2.22769 0.05086 3.00399 18 2.43475 3.60880 0.16637 3.25542 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00015 9.52255 9.52255 1.46634 0.26236 6.23565 0.00196 19 2.78303 3.57843 0.17163 2.68911 - G + - : 1.38629 1.38629 1.38629 1.38629 0.13611 9.52255 2.06215 1.46634 0.26236 3.55840 0.02890 20 2.67978 2.29491 3.30852 0.23057 - U + - : 1.38629 1.38629 1.38629 1.38629 0.92658 0.50753 6.15986 0.35397 1.21030 0.00795 4.83859 21 0.14689 4.10105 2.78445 2.84232 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55620 9.55620 1.46634 0.26236 0.04772 3.06607 22 0.81806 3.79763 0.89844 2.04729 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 23 0.70665 2.04335 1.23097 2.46390 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 24 1.39518 2.63709 0.43034 3.49480 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 25 3.01656 0.36581 2.41581 1.78318 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00523 9.55902 5.26901 1.46634 0.26236 1.09861 0.40547 26 1.11958 3.37259 0.80816 1.64194 - g + - : 1.38629 1.38629 1.38629 1.38629 0.01332 4.33024 9.55393 0.00108 6.82914 0.02704 3.62391 27 2.00798 1.01301 1.99654 1.00291 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00702 4.97266 9.55902 0.00206 6.18823 1.09861 0.40547 28 1.96163 0.86923 2.53917 1.01842 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 29 1.35477 2.06581 0.86128 1.64685 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00056 9.55902 7.61258 1.46634 0.26236 1.09861 0.40547 30 2.28137 1.92818 0.41323 2.39764 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55860 9.55860 1.46634 0.26236 0.25120 1.50449 31 0.92731 1.72043 1.39469 1.72886 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 32 4.03616 0.40763 5.37751 1.16317 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00817 4.81996 9.55902 0.00176 6.34201 1.09861 0.40547 33 9.18737 4.11601 9.43131 0.01663 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 34 3.18131 1.55654 1.19079 0.81278 - u * - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 35 1.06570 1.59330 1.52765 1.44727 - a * - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 36 0.95764 1.92402 1.78925 1.19370 - a * - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 37 0.28819 6.12418 1.41525 5.23574 - A + - : 1.38629 1.38629 1.38629 1.38629 0.25649 1.48650 9.55902 3.44290 0.03249 1.09861 0.40547 38 0.32765 1.99088 3.36768 2.22249 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 39 1.97394 1.42729 1.53526 0.90206 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 40 4.09024 0.49319 1.53211 1.85464 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 41 1.67464 0.85218 2.05272 1.35574 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 42 1.12863 2.76229 0.80615 1.79094 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01217 4.97188 5.26485 0.00205 6.18902 1.09861 0.40547 43 1.07545 2.68149 1.01193 1.48334 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55391 9.55391 1.46634 0.26236 0.02693 3.62796 44 0.93996 1.71337 2.31169 1.10864 - a + - : 1.38629 1.38629 1.38629 1.38629 0.30333 9.55902 1.34103 1.46634 0.26236 1.09861 0.40547 45 1.27544 2.15333 0.81475 1.82112 - g + - : 1.38629 1.38629 1.38629 1.38629 3.24055 4.50753 0.05147 0.00175 6.35136 0.01196 4.43210 46 1.56165 1.86101 0.69270 2.00640 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01451 8.34046 4.25690 1.46634 0.26236 9.20884 0.00010 47 2.06095 1.24268 1.25688 1.20558 - u = - : 1.38629 1.38629 1.38629 1.38629 0.03739 8.32644 3.31173 1.46634 0.26236 9.21466 0.00010 48 1.49631 1.32839 1.26710 1.47188 - g = - : 1.38629 1.38629 1.38629 1.38629 0.25207 3.54992 1.63947 0.00176 6.34258 9.22945 0.00010 49 2.87800 1.05029 1.14655 1.28668 - c = - : 1.38629 1.38629 1.38629 1.38629 0.50147 8.07409 0.93128 1.46634 0.26236 9.30244 0.00009 50 1.56969 2.30042 1.18863 0.94924 - u = - : 1.38629 1.38629 1.38629 1.38629 0.35235 7.57365 1.21586 1.46634 0.26236 9.41155 0.00008 51 1.54800 1.26168 1.85484 1.05650 - u = - : 1.38629 1.38629 1.38629 1.38629 0.44959 7.22275 1.01783 1.46634 0.26236 9.45757 0.00008 52 5.58247 0.61655 2.10242 1.09581 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00229 6.77545 6.77545 1.46634 0.26236 1.40700 0.28087 53 1.72308 2.34986 1.28506 0.79970 - u + - : 1.38629 1.38629 1.38629 1.38629 0.00741 8.32644 4.94242 1.46634 0.26236 9.21466 0.00010 54 1.39835 1.36842 2.92195 0.81045 - u + - : 1.38629 1.38629 1.38629 1.38629 0.02658 8.31952 3.65033 1.46634 0.26236 9.21750 0.00010 55 0.92395 1.83197 3.22844 0.90798 - u + - : 1.38629 1.38629 1.38629 1.38629 0.66131 2.19531 0.98752 0.55612 0.85198 9.22793 0.00010 56 0.89705 1.84310 1.36004 1.73019 - a + - : 1.38629 1.38629 1.38629 1.38629 1.73786 1.35154 0.57047 0.00031 8.08459 4.20290 0.01507 57 1.08056 3.54651 0.71659 1.94244 - g = - : 1.38629 1.38629 1.38629 1.38629 0.19682 7.14313 1.72672 1.46634 0.26236 3.66681 0.02589 58 1.43464 2.21565 0.89083 1.41716 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01811 7.22276 4.06202 1.46634 0.26236 3.09979 0.04611 59 1.22767 1.92015 1.74826 0.95097 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00104 7.56197 7.56197 1.46634 0.26236 2.27058 0.10898 60 1.48959 1.20864 0.93142 2.50179 - g = - : 1.38629 1.38629 1.38629 1.38629 0.04054 3.23358 8.06703 0.00160 6.43698 2.65442 0.07294 61 1.62303 1.33098 1.17739 1.46793 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00051 8.28386 8.28386 1.46634 0.26236 4.21696 0.01485 62 1.16865 1.26211 1.31830 1.97641 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00049 8.32095 8.32095 1.46634 0.26236 9.21691 0.00010 63 2.63684 0.81712 1.45329 1.37472 - c = - : 1.38629 1.38629 1.38629 1.38629 0.42991 8.32095 1.05214 1.46634 0.26236 0.00774 4.86474 64 1.25400 3.92135 0.58106 1.99862 - G + - : 1.38629 1.38629 1.38629 1.38629 0.70926 0.67858 7.33256 0.04115 3.21102 0.00132 6.62837 65 2.85931 0.52158 2.93292 1.21784 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55851 9.55851 1.46634 0.26236 0.21636 1.63705 66 1.37666 2.03554 0.57110 2.95519 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 67 1.63688 1.26213 1.73222 1.06285 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 68 1.33628 2.39074 0.74336 1.77134 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01283 4.75027 5.49771 0.00164 6.41214 1.09861 0.40547 69 1.82959 4.02180 0.26628 2.89361 - G = - : 1.38629 1.38629 1.38629 1.38629 0.03532 9.55499 3.36306 1.46634 0.26236 4.09518 0.01679 70 2.95955 4.20680 0.08617 4.14615 - G = - : 1.38629 1.38629 1.38629 1.38629 0.02913 9.51982 3.55306 1.46634 0.26236 0.54262 0.87042 71 2.75602 3.70324 4.37588 0.10621 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00940 4.71598 7.80686 0.00166 6.40188 0.04806 3.05929 72 3.08654 3.64496 3.19854 0.11946 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00104 9.55679 6.93473 1.46634 0.26236 0.05956 2.85046 73 2.30552 0.20698 4.11034 2.64717 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00049 9.55812 7.77813 1.46634 0.26236 0.13567 2.06459 74 0.80028 3.40118 0.77181 2.89518 - g + - : 1.38629 1.38629 1.38629 1.38629 0.02574 4.24583 4.50188 0.00099 6.91863 0.29064 1.37748 75 0.09624 3.50470 3.65218 3.33078 - A + - : 1.38629 1.38629 1.38629 1.38629 0.03123 9.54795 3.48435 1.46634 0.26236 5.06945 0.00631 76 0.75920 2.40263 1.94085 1.21101 - a + - : 1.38629 1.38629 1.38629 1.38629 0.09002 3.54634 2.86017 0.10753 2.28323 3.73822 0.02408 77 3.28263 1.73188 4.67456 0.25336 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00966 9.45900 4.65232 1.46634 0.26236 0.38026 1.15101 78 4.04123 0.09331 5.07169 2.72964 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00015 9.51966 9.51966 1.46634 0.26236 0.11358 2.23150 79 3.03507 0.27652 3.65587 1.78577 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00739 4.92066 9.55499 0.00196 6.23655 0.03387 3.40204 80 2.09958 0.76191 2.03786 1.27149 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 81 1.19802 1.90357 1.18558 1.41221 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01533 4.19052 9.55902 0.00094 6.97449 1.09861 0.40547 82 3.12599 0.77393 1.94884 1.04279 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00908 4.75835 7.67568 0.00166 6.40401 1.09861 0.40547 83 1.64185 0.97848 3.23206 0.93899 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55863 9.55863 1.46634 0.26236 0.26556 1.45575 84 1.48073 1.36253 1.60135 1.15552 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 85 2.00955 1.22627 1.37047 1.14389 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 86 1.72541 1.29664 1.35158 1.23918 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 87 1.53164 1.46010 1.29236 1.28379 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 88 2.06750 1.09199 1.07760 1.62182 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 89 2.66949 0.42981 2.36542 1.68109 - C = - : 1.38629 1.38629 1.38629 1.38629 0.02807 4.20312 4.36365 0.00095 6.96184 1.09861 0.40547 90 0.60107 2.77978 1.38915 1.96299 - A + - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch-iso.i1i0000644000543100007160000000313513072025446020240 0ustar pchanlowelabɳ !$NoTRNAinf-arch-isoarch-Alaarch-Argarch-Asnarch-Asparch-Cys8.arch-Glnǎarch-GluU(arch-Glyarch-Histarch-Ilearch-Ile2arch-LeuLarch-LysY=arch-Met1arch-Phearch-Pro Earch-SeC narch-Ser arch-Thr xarch-Trp arch-Tyr #arch-Val \arch-iMet#arch-Ala-r2-033017arch-Alaarch-Arg-r2-033017arch-Argarch-Asn-r2-033017arch-Asnarch-Asp-r2-033017arch-Asparch-Cys-r2-033017arch-Cysarch-Gln-r2-033017arch-Glnarch-Glu-r2-033017arch-Gluarch-Gly-r2-033017arch-Glyarch-His-r2-033017arch-Hisarch-Ile-r2-033017arch-Ilearch-Ile2-r2-033017arch-Ile2arch-Leu-r2-033017arch-Leuarch-Lys-r2-033017arch-Lysarch-Met-r2-033017arch-Metarch-Phe-r2-033017arch-Phearch-Pro-r2-033017arch-Proarch-SeC-050516arch-SeCarch-Ser-r2-033017arch-Serarch-Thr-r2-033017arch-Thrarch-Trp-r2-033017arch-Trparch-Tyr-r2-033017arch-Tyrarch-Val-r2-033017arch-Valarch-iMet-r2-033017arch-iMettRNAscan-SE-2.0/lib/models/TRNAinf-arch-5h.cm0000644000543100007160000006273712130431263017704 0ustar pchanlowelabINFERNAL1/a [1.1rc2 | December 2012] NAME tRNA1415G-arch-5h STATES 115 NODES 35 CLEN 37 W 56 ALPH RNA RF yes CONS yes MAP yes DATE Sun Apr 7 19:48:36 2013 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone TRNAinf-arch-5h-nc.cm ../trna1415G-arch-5h.sto COM [2] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmcalibrate --hfile cmcalibrate_files/TRNAinf-arch-5h.hfile --sfile cmcalibrate_files/TRNAinf-arch-5h.sfile --qqfile cmcalibrate_files/TRNAinf-arch-5h.qqfile --ffile cmcalibrate_files/TRNAinf-arch-5h.ffile --seed 208 TRNAinf-arch-5h.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 62 EFFN 62.000000 CKSUM 1071205254 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.8031 0.73972 ECMLC 0.54782 -8.07549 3.75794 1600000 784397 0.001530 ECMGC 0.37872 -18.58015 -1.34892 1600000 272990 0.001465 ECMLI 0.55644 -6.02909 4.99035 1600000 552251 0.002173 ECMGI 0.37656 -17.16558 -0.46511 1600000 215384 0.001857 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 56 76 -11.123 -11.330 -0.003 -9.744 IL 1 1 2 1 4 1 8 59 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 3 - G - = - ML 3 2 3 5 3 1 12 56 76 -12.038 -0.001 -10.692 -1.263 -3.123 1.781 -4.991 D 4 2 3 5 3 0 4 54 75 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 7 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 4 - C - = - ML 6 5 3 8 3 1 11 55 75 -12.038 -0.001 -10.692 -4.766 1.142 0.641 -2.351 D 7 5 3 8 3 0 4 53 74 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 6 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 5 - c - = - ML 9 8 3 11 3 1 10 54 74 -12.038 -0.001 -10.692 -2.208 0.983 0.721 -2.655 D 10 8 3 11 3 0 4 52 73 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 6 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 6 - G - = - ML 12 11 3 14 3 1 9 53 73 -12.038 -0.001 -10.692 -2.157 0.463 1.090 -1.895 D 13 11 3 14 3 0 4 51 72 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 5 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 8 - c - = - ML 15 14 3 17 3 1 8 52 72 -12.038 -0.001 -10.692 -1.673 0.958 0.351 -1.097 D 16 14 3 17 3 0 3 50 71 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 5 53 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 9 - G - = - ML 18 17 3 20 3 1 7 51 71 -12.038 -0.001 -10.692 -2.155 0.381 1.081 -1.484 D 19 17 3 20 3 0 2 49 70 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 5 52 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 11 - G - = - ML 21 20 3 23 3 1 6 50 70 -12.038 -0.001 -10.692 -1.011 -5.253 1.714 -2.345 D 22 20 3 23 3 0 1 48 69 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 5 51 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 12 - U - + - ML 24 23 3 26 3 1 5 49 69 -12.038 -0.037 -5.324 -6.193 -3.149 -6.950 1.951 D 25 23 3 26 3 0 1 47 68 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 5 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - a - + - ML 27 26 3 29 3 1 6 48 68 -5.302 -0.038 -10.619 0.990 -2.091 0.747 -3.319 D 28 26 3 29 3 0 0 47 67 -7.346 -0.185 -3.129 IL 29 29 3 29 3 1 4 48 69 -3.105 -0.219 -5.344 0.000 0.000 0.000 0.000 [ MATR 10 ] - 51 - A - + MR 30 29 3 32 3 1 5 47 67 -12.337 -0.001 -10.655 1.011 -6.778 0.975 -6.633 D 31 29 3 32 3 0 0 45 66 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 2 47 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 50 - u - * MR 33 32 3 35 3 1 5 46 66 -12.337 -0.001 -10.655 0.072 -0.054 -0.380 0.284 D 34 32 3 35 3 0 0 44 65 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 1 46 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 49 - a - * MR 36 35 3 38 3 1 5 45 65 -12.337 -0.001 -10.655 0.512 -0.888 0.122 -0.081 D 37 35 3 38 3 0 0 43 64 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 1 45 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 48 - c - * MR 39 38 3 41 3 1 5 44 64 -12.337 -0.001 -10.655 -4.073 0.884 -0.022 0.152 D 40 38 3 41 3 0 0 42 63 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 1 44 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 47 - U - + MR 42 41 3 44 3 1 5 43 63 -12.337 -0.001 -10.655 -8.311 -7.441 -9.375 1.996 D 43 41 3 44 3 0 0 41 62 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 1 43 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 45 - C - + MR 45 44 3 47 3 1 4 42 62 -12.337 -0.001 -10.655 -6.622 1.782 -7.305 -0.876 D 46 44 3 47 3 0 0 40 61 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 42 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 44 - g - = MR 48 47 3 50 3 1 3 41 61 -12.337 -0.001 -10.655 -0.165 0.101 0.915 -2.737 D 49 47 3 50 3 0 0 39 60 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 41 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 43 - G - = MR 51 50 3 53 3 1 3 40 60 -12.337 -0.001 -10.655 -6.148 -0.986 1.796 -6.709 D 52 50 3 53 3 0 0 38 59 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 40 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 42 - G - = MR 54 53 3 56 3 1 2 39 59 -12.337 -0.001 -10.655 -0.836 -0.528 1.238 -1.368 D 55 53 3 56 3 0 0 37 58 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 39 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 41 - c - = MR 57 56 3 59 3 1 2 38 58 -12.337 -0.001 -10.655 -0.746 0.808 -0.739 0.075 D 58 56 3 59 3 0 0 36 57 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 38 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 39 - C - = MR 60 59 3 62 3 1 2 37 57 -12.337 -0.001 -10.655 -1.223 1.131 -0.698 -0.387 D 61 59 3 62 3 0 0 35 56 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 37 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 37 - G - + MR 63 62 3 65 5 1 1 36 56 -10.983 -0.003 -10.799 -11.011 -11.902 -1.414 -3.141 1.686 -1.764 D 64 62 3 65 5 0 0 34 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 36 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 36 G C = = MP 66 65 3 70 6 2 2 35 55 -12.016 -11.955 -0.003 -10.732 -11.012 -11.407 -8.449 -6.504 -8.711 -3.264 -9.578 -8.356 1.493 -8.795 -7.751 3.301 -8.133 1.656 -5.194 -8.328 -6.873 -7.440 ML 67 65 3 70 6 1 1 33 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 33 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 34 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 34 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 35 C G = = MP 72 71 6 76 6 2 2 33 53 -12.016 -11.955 -0.003 -10.732 -11.012 -11.407 -8.453 -8.483 -7.979 -4.527 -6.451 -8.277 3.262 -7.308 -8.014 1.316 -8.239 -6.432 1.908 -8.408 -4.104 -6.794 ML 73 71 6 76 6 1 1 31 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 31 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 29 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 32 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 32 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 34 c g = = MP 78 77 6 82 6 2 2 31 51 -12.016 -11.955 -0.003 -10.732 -11.012 -11.407 -6.455 -1.179 -6.450 -1.983 -5.326 -7.292 2.790 -5.974 -6.310 1.292 -6.819 -1.651 2.418 -6.644 -2.792 -5.034 ML 79 77 6 82 6 1 1 30 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 28 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 30 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 33 c g = = MP 84 83 6 88 4 2 2 29 49 -11.123 -11.330 -0.003 -9.744 -1.992 -2.046 -3.849 -0.322 -3.789 -1.777 2.206 -4.166 1.579 -1.061 -4.481 -2.492 -0.237 -2.389 1.417 1.141 ML 85 83 6 88 4 1 1 29 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 29 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 27 48 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 1 30 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 1 29 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - A - + - ML 90 89 6 92 3 1 1 27 47 -12.038 -0.001 -10.692 1.995 -8.160 -7.425 -7.557 D 91 89 6 92 3 0 0 25 46 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 28 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - G - + - ML 93 92 3 95 3 1 1 26 46 -12.038 -0.001 -10.692 -6.658 -8.425 1.993 -7.419 D 94 92 3 95 3 0 0 24 45 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 27 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - C - + - ML 96 95 3 98 3 1 1 25 45 -12.038 -0.388 -2.086 -2.240 1.280 -3.763 0.363 D 97 95 3 98 3 0 0 23 44 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - C - + - ML 99 98 3 101 3 1 1 24 45 -0.267 -2.572 -10.306 -1.292 1.455 -4.954 -0.290 D 100 98 3 101 3 0 0 22 43 -11.406 -0.027 -5.798 IL 101 101 3 101 3 1 1 23 44 -6.134 -0.024 -8.834 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - + - ML 102 101 3 104 3 1 1 22 43 -12.038 -0.001 -10.692 -6.658 -8.425 1.993 -7.419 D 103 101 3 104 3 0 0 20 41 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - G - + - ML 105 104 3 107 3 1 1 21 42 -12.038 -0.001 -10.692 -6.658 -8.425 1.993 -7.419 D 106 104 3 107 3 0 0 19 40 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 23 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - u - + - ML 108 107 3 110 3 1 1 20 41 -0.868 -1.148 -10.692 -0.255 -0.176 -1.112 0.859 D 109 107 3 110 3 0 0 15 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 40 -1.284 -0.766 -9.367 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - A - + - ML 111 110 3 113 2 1 1 1 1 * 0.000 1.947 -7.245 -2.940 -6.949 D 112 110 3 113 2 0 0 0 0 * 0.000 IL 113 113 3 113 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 114 113 3 -1 0 0 0 0 0 // HMMER3/f [i1.1rc2 | December 2012] NAME tRNA1415G-arch-5h LENG 37 MAXL 91 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Apr 7 19:48:36 2013 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone TRNAinf-arch-5h-nc.cm ../trna1415G-arch-5h.sto NSEQ 62 EFFN 60.346313 CKSUM 1071205254 STATS LOCAL MSV -7.6225 0.73972 STATS LOCAL VITERBI -7.8882 0.73972 STATS LOCAL FORWARD -2.5713 0.73972 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62914 1.36349 1.05715 1.60600 1.38629 1.38629 1.38629 1.38629 0.11373 2.26765 5.53506 0.07454 2.63344 0.00000 * 1 2.26097 3.54772 0.15214 4.81669 3 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 2 4.65401 0.59507 0.94270 3.00833 4 C = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 3 2.90991 0.70631 0.88693 3.21540 5 c = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 4 2.87461 1.06720 0.63098 2.69534 6 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 5 2.54040 0.72317 1.14385 2.14251 8 c = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 6 2.87277 1.12405 0.63702 2.41205 9 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 7 2.08649 5.00010 0.19869 3.00904 11 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 8 5.64377 3.56504 6.16770 0.03452 12 U + - : 1.38629 1.38629 1.38629 1.38629 0.02773 6.46459 3.65770 1.46634 0.26236 1.09861 0.40547 9 0.70054 2.83386 0.86858 3.67497 14 a + - : 1.38629 1.38629 1.38629 1.38629 0.02872 3.62268 6.44006 0.11552 2.21555 0.11403 2.22777 10 4.82054 1.73689 0.20736 5.76330 16 G = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 11 5.56819 0.51045 1.85253 1.43079 17 C = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 12 3.08893 0.83331 1.74622 1.06303 18 c = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 13 2.44603 1.15927 1.46721 0.99674 19 u = - < 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 14 0.00375 7.01711 6.50888 6.60105 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 15 5.97691 7.20129 0.00479 6.50440 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 16 2.93425 0.49958 3.98706 1.13479 22 C + - _ 1.38629 1.38629 1.38629 1.38629 0.27023 6.46459 1.44715 1.46634 0.26236 1.09861 0.40547 17 2.28056 0.37869 4.79453 1.58600 23 C + - _ 1.38629 1.38629 1.38629 1.38629 1.76680 0.18984 6.19843 0.00491 5.31936 0.01316 4.33745 18 5.97691 7.20129 0.00479 6.50440 26 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 19 5.97691 7.20129 0.00479 6.50440 27 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 20 1.56184 1.50845 2.15503 0.79164 28 u + - _ 1.38629 1.38629 1.38629 1.38629 0.79425 0.60418 6.46459 0.53316 0.88369 1.09861 0.40547 21 0.03704 6.37588 3.42419 6.17255 32 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 22 1.34739 2.57309 0.77491 1.59437 33 g = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 23 1.08836 1.70587 0.81601 3.23341 34 g = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 24 1.44473 1.85689 0.50553 5.32981 35 G = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 25 5.96850 0.48301 1.73389 1.59000 36 C = - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 26 2.36439 3.55789 0.21846 2.60719 37 G + - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 27 2.23077 0.60338 1.87038 1.65270 39 C = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 28 1.90072 0.82723 1.89846 1.33377 41 c = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 29 1.96435 1.75334 0.52855 2.33202 42 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 30 5.60830 2.07223 0.14163 5.99704 43 G = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 31 1.50013 1.31764 0.75260 3.27039 44 g = - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 32 5.93856 0.15135 6.41459 1.99379 45 C + - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 33 7.10387 6.50780 7.83659 0.00271 47 U + - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 34 4.17838 0.77422 1.40310 1.28092 48 c * - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 35 1.03204 2.00059 1.30265 1.44115 49 a * - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 36 1.33603 1.42416 1.64990 1.18963 50 u * - : 1.38629 1.38629 1.38629 1.38629 0.00312 6.46459 6.46459 1.46634 0.26236 1.09861 0.40547 37 0.68541 6.05432 0.71097 5.95241 51 A + - : 1.38629 1.38629 1.38629 1.38629 2.43001 0.09215 * 2.99410 0.05138 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch-iso0000644000543100007160000500474213072025334017565 0ustar pchanlowelabINFERNAL1/a [1.1.2 | July 2016] NAME arch-Ala ACC arch-Ala-r2-033017 STATES 230 NODES 61 CLEN 72 W 603 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:14:26 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Ala-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Ala-r2-033017.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ala-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ala-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ala-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ala-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Ala-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 529 EFFN 529.000000 CKSUM 3607829998 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7859 0.71902 ECMLC 0.66821 -7.57295 1.95843 1600000 700150 0.001714 ECMGC 0.33211 -51.46664 -37.36573 1600000 43238 0.009251 ECMLI 0.69620 -6.96866 2.13493 1600000 678756 0.001768 ECMGI 0.35060 -47.90006 -34.68484 1600000 41141 0.009723 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 603 1256 -13.978 -15.223 -0.001 -11.677 IL 1 1 2 1 4 15 41 605 1258 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 42 606 1258 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 155 - A - - MR 3 2 3 5 5 23 49 605 1257 -14.028 -0.000 -13.843 -14.055 -14.947 1.983 -10.945 -4.459 -10.345 D 4 2 3 5 5 11 37 602 1254 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 41 604 1257 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 154 G C - - MP 6 5 3 10 6 23 48 604 1256 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -12.939 -9.524 -15.457 -7.016 -14.548 -10.676 -8.827 -14.825 -10.896 3.976 -11.084 -7.464 -9.197 -2.069 -11.285 -14.661 ML 7 5 3 10 6 13 39 601 1253 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 38 600 1253 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 9 35 595 1247 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 40 602 1255 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 40 602 1255 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 153 G C - - MP 12 11 6 16 6 21 46 602 1254 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -12.920 -9.525 -15.338 -7.009 -14.537 -10.682 -8.826 -14.751 -10.895 3.998 -11.085 -7.461 -9.194 -11.152 -11.281 -14.481 ML 13 11 6 16 6 13 38 599 1251 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 38 598 1251 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 34 593 1246 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 40 600 1253 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 40 600 1253 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 152 G U - - MP 18 17 6 22 6 19 44 600 1252 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -11.201 -10.010 -11.230 -6.318 -11.351 -13.001 -2.199 -11.047 -10.903 -6.644 -11.459 3.977 -7.715 -12.305 -8.966 -9.896 ML 19 17 6 22 6 12 38 597 1250 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 38 597 1249 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 34 592 1245 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 39 598 1251 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 39 598 1251 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 151 C G - - MP 24 23 6 28 6 17 42 598 1250 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -12.728 -12.969 -8.371 -12.492 -6.606 -7.855 3.998 -13.880 -14.554 -11.165 -7.880 -12.963 -9.692 -13.607 -10.868 -13.099 ML 25 23 6 28 6 12 38 595 1248 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 37 595 1247 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 8 34 591 1243 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 39 596 1249 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 39 596 1249 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 150 C G - - MP 30 29 6 34 6 15 40 596 1248 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -11.799 -11.966 -11.208 -1.001 -9.607 -11.414 3.565 -10.499 -11.283 -3.487 -11.447 -10.132 1.690 -11.686 -1.534 -10.074 ML 31 29 6 34 6 12 37 593 1246 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 37 593 1246 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 8 33 590 1242 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 38 595 1247 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 38 594 1247 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 149 G C - - MP 36 35 6 40 6 13 38 594 1246 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -11.335 -10.786 -10.876 -2.221 -9.659 -11.194 1.773 -10.429 -11.022 3.540 -11.214 -8.593 -1.047 -11.177 -3.963 -2.473 ML 37 35 6 40 6 11 36 592 1245 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 35 591 1244 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 33 589 1242 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 37 593 1245 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 37 593 1245 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 148 G C - - MP 42 41 6 46 4 11 36 592 1244 -14.183 -14.390 -0.000 -12.805 -12.331 -9.545 -13.330 0.278 -14.219 -10.940 -8.807 -13.229 -10.868 3.844 -11.138 -2.194 -2.302 -11.310 -11.123 -12.031 ML 43 41 6 46 4 10 35 591 1243 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 34 590 1242 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 33 589 1241 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 36 591 1244 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 10 35 591 1244 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 9 34 590 1242 -15.093 -0.000 -13.747 -11.355 -5.224 -12.408 1.990 D 49 47 6 50 3 8 33 588 1241 -6.174 -1.687 -0.566 IL 50 50 3 50 3 9 34 590 1243 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 8 33 589 1241 -6.053 -0.022 1.622 -0.581 -2.409 -3.955 D 52 50 3 53 2 7 32 588 1240 -8.445 -0.004 IL 53 53 3 53 2 8 33 589 1241 -5.074 -0.043 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 7 32 588 1240 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 3 93 192 -15.093 -0.000 -13.747 IL 56 56 2 56 3 1 1 94 194 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 100 - A - - - ML 57 56 2 59 3 1 3 93 192 -15.093 -0.000 -13.747 1.778 -8.666 -1.760 -1.873 D 58 56 2 59 3 0 0 91 190 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 93 193 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 101 - G - - - ML 60 59 3 62 3 1 2 92 191 -15.093 -0.000 -13.747 -3.025 -9.755 1.831 -1.650 D 61 59 3 62 3 0 0 90 189 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 92 192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 120 - G - - - ML 63 62 3 65 3 1 1 91 190 -5.709 -0.035 -7.680 -1.243 -11.264 1.839 -10.314 D 64 62 3 65 3 0 0 89 188 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 91 190 -4.291 -0.088 -6.991 0.000 0.000 0.000 0.000 [ MATL 46 ] 122 - u - - - ML 66 65 3 68 3 1 1 90 189 -15.086 -0.000 -13.740 -4.063 0.831 -2.099 0.947 D 67 65 3 68 3 0 0 89 188 -9.026 -0.145 -3.417 IL 68 68 3 68 3 1 1 90 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 123 - C - - - ML 69 68 3 71 5 1 1 89 188 -14.028 -0.000 -13.843 -14.055 -14.947 -10.351 1.983 -10.778 -4.441 D 70 68 3 71 5 0 0 87 186 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 89 188 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 124 147 C G - - MP 72 71 3 76 6 2 2 88 187 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -9.297 -8.994 -9.294 -0.439 -8.161 -10.134 3.205 -8.814 -9.154 1.719 -9.666 -1.911 0.764 -9.478 -0.395 -7.873 ML 73 71 3 76 6 1 1 86 185 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 85 184 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 81 181 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 87 186 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 87 186 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 125 146 C G - - MP 78 77 6 82 6 2 2 86 185 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -11.012 -10.921 -10.692 -0.410 -9.264 -11.125 3.620 -10.072 -10.674 -0.802 -10.983 -8.702 0.631 -11.042 -0.280 -9.433 ML 79 77 6 82 6 1 1 84 183 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 83 183 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 80 179 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 85 184 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 85 184 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 126 145 G C - - MP 84 83 6 88 6 2 2 84 183 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -12.845 -9.528 -14.937 -2.622 -14.505 -10.708 -8.827 -14.489 -10.893 3.984 -11.091 -7.449 -9.184 -11.169 -11.266 -13.919 ML 85 83 6 88 6 1 1 83 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 81 181 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 79 178 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 83 182 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 83 182 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 127 144 G C - - MP 90 89 6 94 6 2 2 82 181 -14.968 -6.651 -0.015 -13.684 -13.964 -14.359 -12.781 -4.590 -14.657 -2.287 -14.474 -10.731 -2.251 -14.292 -10.890 3.953 -11.096 -4.332 -9.174 -11.183 -11.252 -13.559 ML 91 89 6 94 6 1 1 82 181 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 79 179 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 78 177 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 81 180 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 81 180 -4.557 -0.098 -8.068 -6.236 -7.342 0.000 0.000 0.000 0.000 [ MATP 52 ] 128 142 G C - - MP 96 95 6 100 4 2 2 80 179 -4.411 -14.390 -0.070 -12.805 -12.788 -9.530 -14.684 -2.337 -14.479 -10.729 -8.827 -14.310 -10.890 3.977 -11.096 -4.506 -9.176 -11.182 -11.254 -13.591 ML 97 95 6 100 4 1 1 81 180 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 77 177 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 77 176 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 94 194 -0.268 -9.915 -2.571 -12.400 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 135 - U - - - ML 102 101 6 104 3 1 1 15 33 -15.093 -0.000 -13.747 -12.328 -10.977 -13.865 2.000 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 136 - U - - - ML 105 104 3 107 3 1 1 14 32 -15.093 -0.000 -13.747 -8.087 -4.571 -4.746 1.970 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 137 - C - - - ML 108 107 3 110 3 1 1 12 31 -15.093 -0.000 -13.747 -11.436 1.999 -12.182 -9.983 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 138 - A - - - ML 111 110 3 113 3 1 1 11 30 -15.093 -0.000 -13.747 1.301 -10.018 0.617 -9.933 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 139 - A - - - ML 114 113 3 116 3 1 1 10 28 -15.093 -0.000 -13.747 1.999 -11.054 -10.293 -10.389 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 140 - A - - - ML 117 116 3 119 3 1 1 8 27 -15.093 -0.000 -13.747 1.777 -3.383 -1.975 -2.160 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 141 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -11.412 -5.424 -12.482 1.991 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 14 565 1218 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 0 14 565 1218 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 34 57 -0.001 -13.093 -12.500 -13.140 [ MATP 15 ] 11 29 G C - - MP 127 126 1 131 6 2 2 34 57 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -11.265 -9.630 -11.544 -1.790 -13.532 -12.507 -8.799 -11.574 -10.788 3.212 -11.342 2.663 -3.245 -12.066 -10.748 -10.150 ML 128 126 1 131 6 1 1 33 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 33 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 30 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 34 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 34 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 c g - - MP 133 132 6 137 6 2 2 32 55 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -11.997 -12.249 -11.324 1.901 -9.683 -11.477 2.766 -4.804 -11.424 -8.459 -11.549 -10.599 2.437 -11.842 -7.385 -10.227 ML 134 132 6 137 6 1 1 31 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 31 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 29 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 32 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 32 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 U A - - MP 139 138 6 143 6 2 2 30 53 -14.968 -6.667 -0.015 -13.684 -13.964 -14.359 -11.956 -12.115 -11.311 -1.662 -9.696 -11.490 2.260 -10.592 -11.397 -2.585 -11.537 -10.321 3.422 -11.834 -7.395 -10.204 ML 140 138 6 143 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 30 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 29 52 -4.545 -0.099 -8.056 -6.224 -7.329 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 25 C G - - MP 145 144 6 149 4 2 2 28 51 -14.183 -14.390 -0.000 -12.805 -12.012 -12.293 -11.330 -3.014 -9.681 -2.929 3.380 -10.596 -11.434 -8.502 -11.554 -10.696 -6.413 -11.847 2.279 -1.117 ML 146 144 6 149 4 1 1 28 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 28 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 27 49 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 30 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 29 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 151 150 6 153 3 1 1 26 49 -15.093 -0.000 -13.747 1.999 -11.054 -10.293 -10.389 D 152 150 6 153 3 0 0 25 47 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 28 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 154 153 3 156 3 1 1 25 48 -15.093 -0.000 -13.747 -4.455 -11.401 1.983 -10.375 D 155 153 3 156 3 0 0 23 46 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - C - - - ML 157 156 3 159 3 1 1 24 47 -1.005 -0.995 -13.747 -2.549 1.076 -1.060 0.312 D 158 156 3 159 3 0 0 19 41 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 24 47 -1.184 -0.838 -12.324 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - G - - - ML 160 159 3 162 3 1 1 11 29 -15.093 -0.000 -13.747 -4.788 -11.402 1.986 -10.376 D 161 159 3 162 3 0 0 16 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 163 162 3 165 3 1 1 9 28 -15.093 -0.000 -13.747 -9.621 -11.386 1.999 -10.374 D 164 162 3 165 3 0 0 14 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - a - - - ML 166 165 3 168 3 1 1 6 10 -3.875 -0.102 -13.747 0.900 -3.052 -0.208 0.199 D 167 165 3 168 3 0 0 4 9 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 5 10 -5.974 -0.027 -8.674 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.947 -5.154 -9.199 -3.130 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 3 549 1202 -15.093 -0.000 -13.747 IL 174 174 2 174 3 1 1 551 1203 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 175 174 2 177 5 1 3 549 1202 -14.028 -0.165 -3.212 -14.055 -14.947 -0.493 -10.971 1.717 -10.212 D 176 174 2 177 5 0 0 547 1200 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 549 1202 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 31 99 C G - - MP 178 177 3 182 6 2 4 549 1201 -14.805 -14.745 -0.000 -13.521 -13.801 -14.196 -11.830 -12.097 -11.156 -3.831 -9.511 -11.306 3.849 -10.424 -11.256 -1.979 -11.380 -10.471 -0.032 -11.669 -1.817 -10.058 ML 179 177 3 182 6 1 1 545 1197 -12.635 -12.981 -7.696 -0.009 -12.831 -10.361 1.994 -8.054 -7.324 -7.459 MR 180 177 3 182 6 1 1 545 1198 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 543 1196 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 548 1200 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 547 1200 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 32 98 C G - - MP 184 183 6 188 6 2 3 547 1199 -14.805 -14.745 -0.000 -13.521 -13.801 -14.196 -10.833 -10.410 -10.600 -3.422 -9.371 -11.222 3.267 -10.057 -10.514 -1.300 -10.883 -1.396 2.454 -11.049 -6.970 -9.319 ML 185 183 6 188 6 1 1 544 1196 -12.635 -12.981 -7.696 -7.390 -12.831 -0.016 -7.430 1.992 -7.901 -6.457 MR 186 183 6 188 6 1 1 543 1196 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 543 1195 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 546 1198 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 545 1198 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 97 g c - - MP 190 189 6 194 6 2 2 545 1197 -14.805 -14.745 -0.000 -13.521 -13.801 -14.196 -9.801 -9.409 -9.694 1.135 -8.571 -10.380 2.208 -9.244 -9.633 2.630 -10.065 -7.028 1.552 -9.894 -4.637 -8.352 ML 191 189 6 194 6 1 1 542 1195 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 541 1193 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 543 1195 -15.779 -14.478 -0.012 -10.957 -10.974 -7.050 IL 194 194 5 194 6 1 1 543 1196 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 543 1196 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 96 C G - - MP 196 195 6 200 6 2 2 543 1195 -14.968 -14.908 -0.000 -13.684 -13.964 -14.359 -11.873 -11.667 -11.320 -7.945 -9.827 -11.605 3.421 -10.654 -11.347 2.351 -11.539 -3.258 -6.539 -11.899 -4.014 -10.188 ML 197 195 6 200 6 1 1 540 1193 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 538 1191 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 535 1188 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 541 1194 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 541 1194 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 95 C G - - MP 202 201 6 206 4 2 2 541 1193 -14.183 -14.390 -0.000 -12.805 -11.397 -10.395 -11.259 -0.521 -10.634 -12.364 3.676 -10.899 -11.040 1.323 -11.486 -7.784 -7.197 -12.154 -8.299 -9.988 ML 203 201 6 206 4 1 1 539 1191 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 536 1188 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 534 1186 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 540 1193 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 540 1192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - U - - - ML 208 207 6 210 3 1 1 539 1191 -15.093 -0.000 -13.747 -4.043 0.873 -8.600 1.074 D 209 207 6 210 3 0 0 531 1184 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 538 1191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - U - - - ML 211 210 3 213 3 1 1 538 1190 -15.093 -0.000 -13.747 -11.454 -5.572 -12.537 1.992 D 212 210 3 213 3 0 0 528 1180 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 537 1190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - u - - - ML 214 213 3 216 3 1 1 537 1189 -15.093 -0.000 -13.747 -0.156 -0.169 -0.170 0.405 D 215 213 3 216 3 0 0 522 1175 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 536 1188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - u - - - ML 217 216 3 219 3 1 1 536 1188 -15.093 -0.000 -13.747 -0.156 -0.169 -0.170 0.405 D 218 216 3 219 3 0 0 514 1166 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 534 1187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - u - - - ML 220 219 3 222 3 1 1 535 1187 -15.093 -0.000 -13.747 -0.156 -0.169 -0.170 0.405 D 221 219 3 222 3 0 0 497 1149 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 532 1185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - A - - - ML 223 222 3 225 3 1 1 534 1186 -1.629 -0.564 -13.747 1.821 -9.152 -1.367 -3.672 D 224 222 3 225 3 0 0 421 1074 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 573 1225 -0.041 -5.168 -16.033 0.000 0.000 0.000 0.000 [ MATL 40 ] 94 - a - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 0.983 0.192 -3.597 -0.325 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME arch-Ala ACC arch-Ala-r2-033017 LENG 72 MAXL 584 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:14:26 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Ala-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Ala-r2-033017.sto NSEQ 529 EFFN 4.516228 CKSUM 3607829998 STATS LOCAL MSV -7.9981 0.71902 STATS LOCAL VITERBI -9.2895 0.71902 STATS LOCAL FORWARD -2.8711 0.71902 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56360 1.33930 1.15837 1.53903 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 0.00000 * 1 2.83504 3.59602 0.12972 3.33795 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 2 3.12720 4.02499 0.08400 3.97050 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 3 2.36094 3.17973 0.18863 3.32480 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 4 4.06599 0.10074 3.93800 2.82693 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 5 2.47136 0.60512 2.38307 1.28282 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 6 1.96997 1.70337 0.61040 2.00000 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 7 2.16723 3.25163 0.22616 3.01173 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 8 3.24406 3.02334 3.77350 0.11723 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 9 0.47923 1.87583 2.28105 2.07674 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.03744 3.73977 4.34394 0.87500 0.53933 1.09861 0.40547 10 2.17029 3.10138 0.24216 2.88354 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 11 1.69782 1.00422 2.07341 1.12445 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 12 2.55265 1.09724 2.37769 0.70205 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 13 2.42047 0.73416 2.25892 1.11857 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 14 0.06559 4.05275 3.70794 3.83583 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 15 3.21450 4.29325 0.07773 3.86567 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 16 1.80237 0.96290 2.00980 1.14164 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.48293 0.99414 4.34394 0.61065 0.78307 1.09861 0.40547 17 3.26474 4.32495 0.07453 3.89318 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 18 3.48684 4.45127 0.06248 4.00024 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 19 0.96630 2.07280 1.58948 1.23909 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07774 2.78365 4.34394 0.37754 1.15691 1.09861 0.40547 20 0.14298 3.26018 3.22127 2.90153 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 21 1.94076 2.39052 0.44209 2.10264 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03363 3.90752 4.34394 1.00921 0.45335 1.09861 0.40547 22 0.77879 2.54099 1.00552 2.33925 27 a - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 23 1.26067 2.24694 0.91140 1.56612 28 g - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 24 3.08941 0.56427 2.89846 1.10688 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 25 1.70843 3.28543 0.31800 2.92201 30 G - - , 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 26 2.42542 0.41971 2.60174 1.71381 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 27 2.25682 0.84662 1.93554 1.13287 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.10913 4.34394 2.40354 1.46634 0.26236 1.09861 0.40547 28 1.78046 1.34097 1.09829 1.44221 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.02855 4.26336 4.26336 1.46634 0.26236 0.25254 1.49979 29 2.35444 0.79623 1.25972 1.77025 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 30 2.25978 0.61937 1.66516 1.78270 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 31 2.16649 0.99815 2.79902 0.78528 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 32 3.27096 3.06191 3.80195 0.11328 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 33 1.31242 1.56203 1.60644 1.13781 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 34 1.31242 1.56203 1.60644 1.13781 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 35 1.31242 1.56203 1.60644 1.13781 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 36 0.27499 2.97808 2.16383 2.59501 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.29806 1.40748 4.34394 3.55840 0.02890 1.09861 0.40547 37 0.92996 1.43024 2.21953 1.35667 94 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 38 2.02221 1.77564 0.56065 2.06024 95 G - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 39 2.01976 1.34854 0.72275 2.10145 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.10913 4.34394 2.40354 1.46634 0.26236 1.09861 0.40547 40 1.62312 1.18637 1.21619 1.60428 97 c - - > 1.38629 1.38629 1.38629 1.38629 0.02855 4.26336 4.26336 1.46634 0.26236 2.19293 0.11832 41 1.26138 2.14453 0.76574 2.00527 98 g - - > 1.38629 1.38629 1.38629 1.38629 0.02855 4.26336 4.26336 1.46634 0.26236 2.19293 0.11832 42 1.97304 2.81119 0.30511 2.75211 99 G - - > 1.38629 1.38629 1.38629 1.38629 0.02855 4.26336 4.26336 1.46634 0.26236 0.25254 1.49979 43 0.34207 2.72300 2.22845 2.15131 100 A - - , 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 44 2.34908 3.18955 0.25713 2.40698 101 G - - , 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 45 2.12635 3.55050 0.21005 3.18277 120 G - - , 1.38629 1.38629 1.38629 1.38629 0.04405 3.62428 4.10874 0.79272 0.60260 1.09861 0.40547 46 1.97810 1.06130 2.31079 0.87592 122 u - - , 1.38629 1.38629 1.38629 1.38629 0.02641 4.34049 4.34049 1.46634 0.26236 0.94811 0.49016 47 3.64727 0.09902 4.18396 2.93796 123 C - - , 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 48 2.08280 0.93216 1.50034 1.35224 124 c - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 49 2.26533 0.65475 2.07414 1.38242 125 C - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 50 2.99351 3.98741 0.09270 3.91818 126 G - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 51 2.72953 3.48098 0.13308 3.55526 127 G - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 52 2.94642 3.97386 0.09628 3.88938 128 G - - < 1.38629 1.38629 1.38629 1.38629 0.06147 3.06542 4.34394 1.73812 0.19340 1.09861 0.40547 53 3.39495 3.23434 3.93396 0.09706 135 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 54 2.79259 2.68038 3.19569 0.18722 136 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 55 3.79953 0.07996 4.32674 3.18796 137 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 56 0.60574 2.92090 1.12917 2.56208 138 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 57 0.06559 4.05275 3.70794 3.83583 139 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 58 0.36711 2.50272 2.26006 2.11148 140 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 59 3.25999 3.04625 3.79034 0.11487 141 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 60 4.04062 0.11709 3.82244 2.64456 142 C - - > 1.38629 1.38629 1.38629 1.38629 0.03372 3.90356 4.34394 1.00583 0.45530 1.09861 0.40547 61 3.74922 0.15683 3.34169 2.45065 144 C - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 62 4.07029 0.11193 3.83752 2.69892 145 C - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 63 1.66058 2.22809 0.55230 2.06662 146 G - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 64 1.60281 1.63923 0.80781 1.84068 147 g - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 65 3.21401 0.26759 3.07183 1.90886 148 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 66 2.26626 0.67802 1.58263 1.69692 149 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 67 1.47009 2.55240 0.52921 2.27175 150 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 68 3.10917 4.10267 0.08604 3.84998 151 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 69 3.53628 2.54068 3.02058 0.17044 152 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 70 4.14148 0.10100 3.89479 2.81648 153 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 71 3.73415 0.14391 3.44842 2.54662 154 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02631 4.34394 4.34394 1.46634 0.26236 1.09861 0.40547 72 0.08845 3.82716 3.31786 3.62508 155 A - - : 1.38629 1.38629 1.38629 1.38629 0.68967 0.69663 * 1.10916 0.40023 0.00000 * // INFERNAL1/a [1.1.2 | July 2016] NAME arch-Arg ACC arch-Arg-r2-033017 STATES 239 NODES 64 CLEN 75 W 575 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:43:18 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Arg-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Arg-r2-033017.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Arg-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Arg-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 786 EFFN 786.000000 CKSUM 499898704 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4599 0.71884 ECMLC 0.63707 -7.25687 2.66090 1600000 665565 0.001803 ECMGC 0.30171 -49.93043 -35.74178 1600000 28920 0.013831 ECMLI 0.51786 -9.45471 2.66368 1600000 637776 0.001882 ECMGI 0.29932 -47.09210 -32.86906 1600000 28246 0.014161 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 575 1184 -14.548 -15.793 -0.000 -12.247 IL 1 1 2 1 4 21 44 577 1186 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 46 578 1186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 171 - G - - MR 3 2 3 5 5 28 55 576 1185 -14.597 -0.000 -14.412 -14.624 -15.516 -1.716 -3.688 1.767 -2.212 D 4 2 3 5 5 18 40 573 1182 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 21 44 576 1185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 170 G C - - MP 6 5 3 10 6 28 54 575 1184 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -13.424 -10.092 -15.573 -3.015 -15.077 -11.267 -9.392 -15.102 -11.458 3.988 -11.655 -8.016 -9.751 -11.730 -11.834 -14.579 ML 7 5 3 10 6 20 42 573 1181 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 42 572 1181 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 16 39 567 1175 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 21 43 574 1183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 21 43 574 1183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 169 G C - - MP 12 11 6 16 6 27 52 573 1182 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -9.821 -8.430 -9.654 -0.807 -10.700 -10.189 0.932 -10.301 -10.010 3.655 -10.263 -1.899 -0.675 -9.497 -6.170 -8.611 ML 13 11 6 16 6 20 42 571 1180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 20 42 570 1179 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 16 39 565 1174 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 21 43 572 1181 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 21 43 572 1181 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 168 G C - - MP 18 17 6 22 6 25 50 571 1180 -7.123 -15.472 -0.011 -10.768 -14.529 -14.924 -9.508 -3.009 -9.326 0.758 -10.455 -9.923 2.135 -10.015 -9.764 3.130 -10.011 -0.218 -3.139 -9.181 -5.691 -4.869 ML 19 17 6 22 6 20 42 569 1178 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 42 568 1177 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 39 564 1173 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 22 46 570 1179 -5.394 -5.657 -0.087 -7.312 -8.088 -7.749 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 43 570 1179 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 167 C G - - MP 24 23 6 28 6 24 48 569 1178 -15.532 -15.472 -0.000 -14.248 -14.528 -14.923 -12.581 -12.862 -11.899 -9.099 -10.250 -12.043 3.924 -11.165 -12.003 -0.731 -12.123 -11.264 -3.140 -12.416 -3.337 -10.805 ML 25 23 6 28 6 20 42 568 1176 -6.925 -7.271 -0.675 -1.680 -7.121 -4.651 -0.237 0.712 -0.956 -0.003 MR 26 23 6 28 6 19 41 567 1175 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 38 563 1172 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 42 568 1177 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 42 568 1177 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 166 C G - - MP 30 29 6 34 6 22 46 567 1176 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -9.856 -9.556 -9.853 -0.009 -8.718 -10.694 3.241 -9.372 -9.712 1.716 -10.224 -6.050 0.333 -10.037 -0.147 -3.719 ML 31 29 6 34 6 19 41 566 1175 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 18 41 565 1174 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 15 38 562 1171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 19 42 566 1175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 42 566 1175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 165 C G - - MP 36 35 6 40 6 20 44 565 1174 -15.533 -15.472 -0.033 -5.453 -14.529 -14.924 -9.850 -4.056 -9.849 -0.612 -8.714 -10.692 3.512 -9.368 -9.707 0.620 -10.220 -4.980 0.900 -10.033 -1.219 -8.427 ML 37 35 6 40 6 18 41 565 1174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 17 40 563 1172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 38 561 1170 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 41 565 1173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 41 564 1173 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 164 G C - - MP 42 41 6 46 4 18 42 563 1172 -14.720 -14.927 -0.000 -13.341 -12.661 -9.996 -13.409 -0.221 -14.289 -11.386 -3.410 -13.517 -11.342 3.854 -11.602 -2.284 -1.392 -11.677 -11.239 -12.204 ML 43 41 6 46 4 18 42 565 1174 -8.108 -0.068 -4.857 -7.020 1.983 -6.327 -5.712 -5.920 MR 44 41 6 46 4 15 39 562 1170 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 38 560 1169 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 41 563 1172 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 41 564 1173 -0.709 -1.373 -9.055 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 48 47 6 50 3 16 40 561 1170 -15.663 -0.000 -14.317 -11.950 -4.425 -13.011 1.983 D 49 47 6 50 3 14 38 560 1168 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 40 562 1171 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 51 50 3 53 2 15 39 560 1169 -16.318 -0.000 1.290 -3.719 0.488 -3.718 D 52 50 3 53 2 14 38 559 1168 -8.445 -0.004 IL 53 53 3 53 2 15 39 561 1169 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 14 38 559 1168 [ BEGR 45 ] - - - - - - S 55 54 1 56 3 0 4 330 726 -15.663 -0.000 -14.317 IL 56 56 2 56 3 1 3 330 727 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 103 - A - - - ML 57 56 2 59 3 1 4 330 726 -15.663 -0.004 -8.553 1.082 -1.365 -1.544 0.204 D 58 56 2 59 3 0 1 305 702 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 329 725 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 104 - G - - - ML 60 59 3 62 3 1 3 329 725 -2.661 -0.248 -14.313 -1.581 -3.362 1.770 -2.657 D 61 59 3 62 3 0 1 237 633 -8.764 -0.175 -3.156 IL 62 62 3 62 3 1 3 368 764 -0.067 -4.462 -14.864 0.000 0.000 0.000 0.000 [ MATL 48 ] 131 - G - - - ML 63 62 3 65 3 1 2 69 133 -6.889 -0.384 -2.151 0.341 -9.095 1.163 -1.022 D 64 62 3 65 3 0 1 68 131 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 2 69 133 -3.781 -0.126 -6.481 0.000 0.000 0.000 0.000 [ MATL 49 ] 133 - U - - - ML 66 65 3 68 3 1 1 68 132 -15.295 -0.269 -2.555 -0.539 -0.903 -5.371 1.461 D 67 65 3 68 3 0 1 67 131 -14.934 -0.002 -9.325 IL 68 68 3 68 3 1 1 69 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 134 - C - - - ML 69 68 3 71 5 1 1 67 131 -14.393 -0.000 -14.208 -14.421 -15.312 -10.887 1.992 -11.346 -5.565 D 70 68 3 71 5 0 0 66 130 -12.124 -0.004 -11.385 -9.760 -9.673 IL 71 71 3 71 5 1 1 67 131 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 135 160 C G - - MP 72 71 3 76 6 2 2 66 130 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -10.380 -9.724 -10.283 -1.439 -9.444 -11.008 3.025 -10.003 -10.280 2.434 -10.704 0.294 -1.740 -10.432 -0.856 -8.983 ML 73 71 3 76 6 1 1 64 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 64 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 60 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 65 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 65 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 136 159 c g - - MP 78 77 6 82 6 2 2 64 128 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -9.813 -5.405 -9.805 -0.502 -8.735 -10.635 2.888 -9.369 -9.689 1.469 0.929 0.157 0.931 -5.117 -3.212 -4.987 ML 79 77 6 82 6 1 1 62 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 62 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 58 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 63 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 63 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 137 158 G C - - MP 84 83 6 88 6 2 2 62 126 -6.769 -4.995 -0.060 -14.249 -14.529 -14.924 -13.200 -10.100 -14.695 -0.890 -14.962 -11.356 -3.012 -14.455 -11.449 3.909 -11.674 -1.685 -9.715 -11.786 -11.781 -13.488 ML 85 83 6 88 6 1 1 60 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 59 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 56 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 61 125 -5.703 -5.966 -0.069 -7.622 -8.398 -8.058 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 61 125 -6.499 -0.025 -10.010 -8.178 -9.284 0.000 0.000 0.000 0.000 [ MATP 54 ] 139 156 G C - - MP 90 89 6 94 6 2 2 60 124 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -9.881 -3.998 -9.722 0.144 -10.827 -4.045 -2.071 -10.402 -10.031 3.799 -10.272 -6.094 -3.787 -4.034 -1.135 -8.689 ML 91 89 6 94 6 1 1 58 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 57 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 54 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 59 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 59 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 140 155 G C - - MP 96 95 6 100 4 2 2 58 122 -3.056 -14.960 -0.185 -13.374 -13.517 -4.039 -16.110 -7.586 -15.122 -4.051 -9.393 -15.444 -11.461 3.982 -11.647 -8.031 -9.764 -4.054 -11.854 -15.365 ML 97 95 6 100 4 1 1 56 119 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 53 117 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 53 116 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 64 127 -0.417 -11.251 -1.997 -13.736 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 40 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 145 - U - - - ML 102 101 6 104 3 1 1 38 82 -15.663 -0.000 -14.317 -3.141 -5.777 -5.896 1.945 D 103 101 6 104 3 0 0 36 80 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 39 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 146 - U - - - ML 105 104 3 107 3 1 1 37 81 -15.663 -0.000 -14.317 -11.825 -3.944 -12.850 1.976 D 106 104 3 107 3 0 0 34 79 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 38 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 147 - C - - - ML 108 107 3 110 3 1 1 36 80 -4.986 -0.046 -14.317 -12.156 2.000 -12.978 -10.607 D 109 107 3 110 3 0 0 33 77 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 43 88 -0.599 -1.563 -9.686 0.000 0.000 0.000 0.000 [ MATL 59 ] 151 - A - - - ML 111 110 3 113 3 1 1 11 29 -15.663 -0.000 -14.317 1.177 -10.599 0.797 -10.511 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 152 - A - - - ML 114 113 3 116 3 1 1 9 28 -15.663 -0.000 -14.317 2.000 -11.609 -10.852 -10.943 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 153 - A - - - ML 117 116 3 119 3 1 1 8 26 -15.663 -0.000 -14.317 1.837 -5.551 -1.624 -3.602 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 154 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -8.522 -2.880 -2.565 1.885 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 17 528 1137 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 182 1 17 528 1137 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 28 45 -0.000 -13.660 -13.067 -13.707 [ MATP 15 ] 11 30 G C - - MP 127 126 1 131 6 2 6 28 45 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -11.646 -4.412 -11.863 -2.485 -13.965 -14.143 -9.367 -11.903 -11.336 3.531 -11.971 2.057 -9.318 -12.926 -11.232 -4.373 ML 128 126 1 131 6 1 2 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 2 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 2 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 29 C G - - MP 133 132 6 137 6 2 6 26 43 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -12.580 -12.860 -11.899 -9.096 -10.250 -12.044 3.505 -11.165 -12.002 1.776 -12.123 -11.259 0.249 -12.415 -5.241 -10.804 ML 134 132 6 137 6 1 2 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 2 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 28 u a - - MP 139 138 6 143 6 2 6 24 41 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -4.923 -4.113 -9.838 -0.169 -0.709 -10.680 1.852 -9.358 -9.697 2.095 -10.210 -7.104 2.684 -10.020 -3.595 -8.416 ML 140 138 6 143 6 1 2 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 2 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 27 c g - - MP 145 144 6 149 4 2 5 22 39 -14.753 -14.960 -0.000 -13.374 -11.524 -3.399 -11.221 -5.728 -9.808 -11.673 2.815 -10.608 -5.373 -0.722 -11.516 -9.180 -1.410 -3.900 1.336 2.391 ML 146 144 6 149 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 2 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 151 150 6 153 3 1 3 20 37 -15.663 -0.000 -14.317 2.000 -11.609 -10.852 -10.943 D 152 150 6 153 3 0 0 22 40 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 154 153 3 156 3 1 2 19 35 -15.663 -0.000 -14.317 -4.133 -11.966 1.979 -10.940 D 155 153 3 156 3 0 0 21 39 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - C - - - ML 157 156 3 159 3 1 1 18 34 -15.663 -0.179 -3.099 -3.851 1.535 -3.924 -0.048 D 158 156 3 159 3 0 0 20 38 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - C - - - ML 160 159 3 162 3 1 1 17 33 -15.484 -0.084 -4.145 0.214 1.140 -8.753 -0.656 D 161 159 3 162 3 0 0 15 32 -13.989 -9.502 -0.002 IL 162 162 3 162 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - U - - - ML 163 162 3 165 3 1 1 16 32 -15.400 -0.000 -14.054 0.800 -2.151 -6.013 1.013 D 164 162 3 165 3 0 0 15 31 -14.500 -0.003 -8.892 IL 165 165 3 165 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 1 15 31 -15.663 -0.000 -14.317 -10.188 -11.949 1.999 -10.938 D 167 165 3 168 3 0 0 17 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - - - ML 169 168 3 171 3 1 1 14 29 -15.663 -0.000 -14.317 -10.188 -11.949 1.999 -10.938 D 170 168 3 171 3 0 0 16 34 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - - - ML 172 171 3 174 3 1 1 13 28 -3.160 -0.223 -4.986 1.981 -6.459 -10.446 -4.598 D 173 171 3 174 3 0 0 10 27 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 13 28 -2.187 -0.359 -10.270 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - U - - - ML 175 174 3 177 3 1 1 8 26 -15.617 -0.000 -14.271 -2.588 0.089 -4.281 1.443 D 176 174 3 177 3 0 0 9 28 -12.117 -0.016 -6.509 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - A - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 1.920 -2.990 -3.686 -6.228 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 182 125 1 183 3 0 0 510 1119 -5.007 -0.046 -14.317 IL 183 183 2 183 3 1 1 511 1120 -5.441 -0.039 -8.141 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 184 183 2 186 5 1 1 510 1119 -14.597 -0.000 -14.412 -14.624 -15.516 -0.580 -1.898 1.554 -2.974 D 185 183 2 186 5 0 0 507 1116 -4.959 -0.803 -4.221 -2.596 -2.508 IL 186 186 3 186 5 1 1 510 1119 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 102 g u - - MP 187 186 3 191 6 2 2 509 1118 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -5.874 -9.518 -9.825 0.455 -1.690 -10.667 2.159 -9.353 -9.688 1.288 -6.911 2.166 1.344 -10.005 -1.519 -8.407 ML 188 186 3 191 6 1 1 507 1115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 506 1115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 500 1109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 508 1117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 508 1117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 101 C G - - MP 193 192 6 197 6 2 2 507 1116 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -9.835 -9.536 -9.835 -0.064 -6.121 -10.679 3.210 -9.354 -9.693 1.362 -10.206 -2.368 1.262 -10.017 -0.828 -4.695 ML 194 192 6 197 6 1 1 505 1113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 504 1113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 499 1107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 506 1115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 506 1115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 100 G C - - MP 199 198 6 203 6 2 2 505 1114 -15.533 -6.914 -0.012 -14.249 -14.529 -14.924 -9.504 -0.994 -9.323 0.791 -10.453 -9.918 -1.729 -10.013 -9.761 3.598 -10.007 -0.941 -0.669 -3.141 -3.682 -6.501 ML 200 198 6 203 6 1 1 503 1112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 502 1110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 497 1106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 504 1113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 504 1113 -4.796 -0.083 -8.308 -6.475 -7.581 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 98 G C - - MP 205 204 6 209 6 2 2 503 1112 -15.533 -15.472 -0.000 -14.249 -14.529 -14.924 -12.059 -10.175 -12.428 -3.867 -14.247 -12.450 -2.788 -12.443 -11.378 3.937 -11.851 -1.388 -9.448 -12.384 -11.403 -3.497 ML 206 204 6 209 6 1 1 501 1110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 499 1108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 496 1105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 502 1111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 502 1111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 37 97 C G - - MP 211 210 6 215 4 2 2 501 1110 -14.753 -14.960 -0.000 -13.374 -12.304 -11.829 -11.863 1.347 -10.534 -12.313 3.405 -11.264 -11.832 1.422 -12.089 -9.461 -2.521 -12.510 -8.225 -10.695 ML 212 210 6 215 4 1 1 500 1108 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 497 1105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 214 210 6 215 4 0 0 495 1104 -4.568 -4.250 -2.265 -0.520 IL 215 215 5 215 4 1 1 501 1110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 500 1109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - C - - - ML 217 216 6 219 3 1 1 499 1108 -15.663 -0.000 -14.317 -2.720 1.810 -5.658 -1.635 D 218 216 6 219 3 0 0 492 1101 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 499 1108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - U - - - ML 220 219 3 222 3 1 1 498 1107 -15.663 -0.000 -14.317 -11.824 -3.941 -12.848 1.976 D 221 219 3 222 3 0 0 489 1098 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 498 1107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - u - - - ML 223 222 3 225 3 1 1 497 1106 -15.663 -0.000 -14.317 -0.064 0.016 -0.072 0.112 D 224 222 3 225 3 0 0 484 1093 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 497 1105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - g - - - ML 226 225 3 228 3 1 1 496 1105 -15.663 -0.000 -14.317 -0.064 0.016 0.104 -0.063 D 227 225 3 228 3 0 0 476 1085 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 495 1104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - u - - - ML 229 228 3 231 3 1 1 495 1104 -15.663 -0.000 -14.317 -0.064 -0.072 -0.072 0.189 D 230 228 3 231 3 0 0 460 1069 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 493 1102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - G - - - ML 232 231 3 234 3 1 1 494 1103 -1.778 -0.498 -14.317 0.670 -5.581 1.154 -2.611 D 233 231 3 234 3 0 0 393 1002 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 534 1143 -0.044 -5.069 -16.353 0.000 0.000 0.000 0.000 [ MATL 43 ] 96 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.954 -11.344 -3.004 -10.837 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME arch-Arg ACC arch-Arg-r2-033017 LENG 75 MAXL 562 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:43:18 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Arg-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Arg-r2-033017.sto NSEQ 786 EFFN 7.996605 CKSUM 499898704 STATS LOCAL MSV -8.1519 0.71884 STATS LOCAL VITERBI -9.2689 0.71884 STATS LOCAL FORWARD -2.8901 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57587 1.30592 1.15697 1.57112 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 0.00000 * 1 3.46108 4.64300 0.05235 4.60713 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 2 2.04465 2.14854 0.41036 2.40234 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 3 1.78191 1.65339 0.59816 2.40284 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02512 4.18273 4.65076 0.98248 0.46902 1.09861 0.40547 4 4.00057 0.14596 3.08710 2.63288 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 5 2.18699 0.80993 1.57426 1.44521 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 6 2.28636 0.68139 1.87942 1.42806 7 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 7 2.25689 3.28660 0.21557 2.95919 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 8 3.73212 3.30184 4.25571 0.07790 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 9 0.60004 2.80452 1.17759 2.49305 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 10 2.27640 3.25129 0.21013 3.03357 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 11 2.98305 0.54801 1.60050 1.77508 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 12 2.07251 1.24666 1.44120 1.04975 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 13 2.20096 1.03746 1.95530 0.93285 14 u - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 14 0.03139 4.77998 4.40028 4.58238 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 15 3.59658 4.91116 0.04768 4.44158 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 16 2.53642 0.47917 3.10881 1.35908 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.11820 4.65076 2.28351 1.46634 0.26236 1.09861 0.40547 17 1.30999 0.82559 2.74858 1.47761 18 c - - _ 1.38629 1.38629 1.38629 1.38629 0.06674 4.55384 2.91809 1.46634 0.26236 2.53908 0.08223 18 1.00569 2.08016 2.46276 0.85779 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02226 4.50935 4.50935 1.46634 0.26236 0.12674 2.12831 19 4.12178 5.15493 0.03224 4.63124 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 20 4.12178 5.15493 0.03224 4.63124 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 21 0.05486 4.17610 4.06111 3.87289 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.14225 2.32182 3.36683 0.38098 1.14946 1.09861 0.40547 22 2.27959 1.41557 2.93112 0.50825 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01979 4.62550 4.62550 1.46634 0.26236 0.44076 1.03155 23 0.13607 3.07797 3.11309 3.30502 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 24 1.83109 2.07993 0.79486 1.33492 27 g - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 25 1.11574 1.52357 1.18161 1.91317 28 a - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 26 1.95211 1.65611 0.50743 2.73176 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 27 3.30712 0.46348 3.04402 1.24951 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.04470 3.37666 4.65076 0.48847 0.95078 1.09861 0.40547 28 1.68098 2.46424 0.44681 2.41837 32 G - - , 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 29 1.93980 1.23340 1.16877 1.36957 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 30 2.19306 0.82352 1.66202 1.34790 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 31 1.70126 2.63749 0.42982 2.34985 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 32 2.37927 3.11594 0.20620 3.00833 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 33 1.84696 0.69970 1.62616 1.90469 37 c - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 34 2.72002 0.24402 3.60789 2.09117 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 35 3.66193 3.17805 4.18190 0.08623 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 36 1.30864 1.48772 1.54700 1.23430 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 37 1.30859 1.49290 1.46828 1.29186 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 38 1.30785 1.52271 1.54665 1.20893 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 39 1.01760 2.94848 0.71126 2.35290 43 g - - _ 1.38629 1.38629 1.38629 1.38629 0.28763 1.42542 4.65076 3.49598 0.03079 1.09861 0.40547 40 0.07688 4.16808 3.20177 4.02692 96 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 41 2.12660 1.71951 0.64854 1.72151 97 G - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 42 3.32393 0.25814 2.94255 1.97493 98 C - - > 1.38629 1.38629 1.38629 1.38629 0.02604 4.12604 4.65076 0.93625 0.49774 1.09861 0.40547 43 2.62296 0.48053 2.44166 1.50535 100 C - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 44 1.57092 1.79599 0.72248 1.96157 101 g - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 45 1.52903 1.72313 1.12203 1.27608 102 g - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 46 0.83526 1.94894 2.02623 1.23107 103 a - - , 1.38629 1.38629 1.38629 1.38629 0.02141 4.65076 4.45472 1.46634 0.26236 1.09861 0.40547 47 2.08248 2.93588 0.29370 2.56666 104 G - - , 1.38629 1.38629 1.38629 1.38629 0.15577 2.00496 4.64869 3.06378 0.04784 0.97228 0.47517 48 1.21315 2.78297 0.72760 1.84630 131 g - - , 1.38629 1.38629 1.38629 1.38629 0.22814 4.12158 1.67253 0.93271 0.50003 1.09861 0.40547 49 1.64005 1.81539 2.64225 0.55852 133 U - - , 1.38629 1.38629 1.38629 1.38629 0.16276 4.45448 1.97632 1.46634 0.26236 0.09691 2.38200 50 4.26179 0.05402 4.70869 3.52420 134 C - - , 1.38629 1.38629 1.38629 1.38629 0.02157 4.54058 4.54058 1.46634 0.26236 0.15512 1.94013 51 2.24673 0.98306 1.06185 1.74712 135 c - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 52 2.00066 1.05973 1.26259 1.44697 136 c - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 53 2.80880 3.88076 0.10486 3.98248 137 G - - < 1.38629 1.38629 1.38629 1.38629 0.02676 4.08363 4.65076 0.90306 0.51975 1.09861 0.40547 54 1.88522 2.66053 0.36963 2.43838 139 G - - < 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 55 3.32824 4.14032 0.07126 4.07419 140 G - - < 1.38629 1.38629 1.38629 1.38629 0.12130 2.25683 4.65076 1.39102 0.28611 1.09861 0.40547 56 2.85241 3.03972 3.57721 0.14330 145 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 57 3.66249 3.17907 4.18248 0.08616 146 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 58 4.51685 0.03967 4.93312 3.87433 147 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04508 3.36605 4.65076 1.17833 0.36787 1.09861 0.40547 59 0.60709 3.57322 0.94346 3.27751 151 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 60 0.03139 4.77998 4.40028 4.58238 152 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 61 0.20583 3.27064 2.35955 2.92656 153 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 62 3.04910 2.69459 2.97297 0.18167 154 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 63 4.31289 0.07898 4.11528 3.07424 155 C - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 64 2.85521 0.41410 2.37144 1.67039 156 C - - > 1.38629 1.38629 1.38629 1.38629 0.04508 3.36605 4.65076 0.48387 0.95813 1.09861 0.40547 65 4.12345 0.13454 3.73710 2.45490 158 C - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 66 1.63643 1.65776 0.84987 1.67508 159 g - - > 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 67 2.04537 1.23945 0.87936 1.79532 160 g - - > 1.38629 1.38629 1.38629 1.38629 0.03453 3.71374 4.65076 0.97473 0.47368 1.09861 0.40547 68 3.16886 0.24191 3.14746 2.04130 164 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 69 1.64799 1.99788 0.59945 2.09697 165 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 70 1.75208 1.66899 0.69102 1.98715 166 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01972 4.65076 4.60811 1.46634 0.26236 1.09861 0.40547 71 2.95338 3.16045 0.12511 3.77109 167 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01930 4.65034 4.65034 1.46634 0.26236 1.07038 0.41989 72 2.66852 0.69680 1.57258 1.49183 168 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 73 2.61849 0.47005 2.03874 1.76069 169 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 74 4.75586 0.06276 4.55625 3.17665 170 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01929 4.65076 4.65076 1.46634 0.26236 1.09861 0.40547 75 2.11780 2.98042 0.29529 2.46966 171 G - - : 1.38629 1.38629 1.38629 1.38629 0.54514 0.86693 * 1.10793 0.40084 0.00000 * // INFERNAL1/a [1.1.2 | July 2016] NAME arch-Asn ACC arch-Asn-r2-033017 STATES 233 NODES 62 CLEN 73 W 621 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:18:24 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Asn-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Asn-r2-033017.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asn-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asn-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asn-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asn-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Asn-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 188 EFFN 188.000000 CKSUM 1584467930 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.2147 0.71893 ECMLC 0.45337 -11.55843 2.41891 1600000 678077 0.001770 ECMGC 0.34037 -44.59381 -30.48629 1600000 48692 0.008215 ECMLI 0.46650 -10.66802 2.86296 1600000 661544 0.001814 ECMGI 0.33827 -41.51537 -27.48485 1600000 46053 0.008686 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 621 1286 -12.495 -13.740 -0.002 -10.194 IL 1 1 2 1 4 11 39 623 1289 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 40 623 1289 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 155 - G - - MR 3 2 3 5 5 19 46 622 1288 -12.547 -0.001 -12.362 -12.574 -13.466 -8.163 -1.992 1.904 -8.837 D 4 2 3 5 5 8 36 619 1285 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 11 39 622 1288 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 154 G C - - MP 6 5 3 10 6 19 45 621 1287 -13.511 -13.450 -0.006 -12.227 -8.212 -12.902 0.003 -8.077 -12.801 -5.456 -12.932 -9.317 -7.356 -12.527 -9.429 3.901 -9.649 -5.965 -7.694 -9.754 -9.754 -11.617 ML 7 5 3 10 6 10 38 619 1284 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 10 37 618 1284 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 6 33 613 1278 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 11 38 620 1286 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 11 39 620 1286 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 153 C G - - MP 12 11 6 16 6 18 44 619 1285 -13.506 -13.446 -0.001 -12.222 -12.502 -12.897 -10.521 -10.789 -9.841 -7.026 -8.195 -9.988 3.951 -9.108 -9.943 -2.717 -10.065 -9.169 -1.540 -10.359 -5.898 -8.746 ML 13 11 6 16 6 9 37 617 1282 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 10 37 616 1282 -7.821 -6.550 -2.459 -6.529 -0.406 -4.742 -0.353 -1.328 1.147 -0.729 D 15 11 6 16 6 6 32 611 1277 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 10 38 618 1284 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 11 38 618 1284 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 152 C G - - MP 18 17 6 22 6 16 42 617 1283 -13.506 -13.446 -0.001 -12.222 -12.502 -12.897 -12.512 -12.756 -8.346 -11.168 -6.582 -7.836 3.997 -12.935 -13.683 -10.477 -7.861 -12.397 -8.751 -13.200 -9.825 -12.338 ML 19 17 6 22 6 9 36 615 1280 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 10 37 615 1280 -7.821 -6.550 -2.459 -6.529 -0.406 -4.742 -0.353 -1.328 1.147 -0.729 D 21 17 6 22 6 6 32 610 1275 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 10 38 616 1282 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 10 38 616 1282 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 151 G C - - MP 24 23 6 28 6 14 40 615 1281 -13.506 -13.446 -0.001 -12.222 -12.502 -12.897 -7.588 -6.214 -7.411 -1.645 -8.523 -7.979 -0.354 -8.093 -7.824 3.663 -8.071 -0.872 -0.923 -0.014 -3.111 -6.375 ML 25 23 6 28 6 9 36 613 1279 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 9 36 613 1279 -7.821 -6.550 -0.688 -6.529 -1.662 -4.742 -0.451 0.948 -1.190 -0.150 D 27 23 6 28 6 6 32 609 1274 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 10 37 614 1280 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 10 37 614 1280 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 150 C G - - MP 30 29 6 34 6 13 38 613 1279 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -8.050 -7.763 -8.023 0.152 -3.378 -8.824 3.223 -7.530 -7.893 1.952 -8.388 -5.343 0.161 -8.220 -1.323 -6.615 ML 31 29 6 34 6 9 35 611 1277 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 8 35 611 1276 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 5 31 608 1273 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 9 36 612 1278 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 10 36 612 1278 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 149 c g - - MP 36 35 6 40 6 11 36 611 1277 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -8.212 -7.888 -8.158 0.572 -7.012 -8.919 2.912 -7.681 -8.052 2.412 -8.526 -5.481 0.270 -8.355 -1.358 -6.773 ML 37 35 6 40 6 8 34 610 1275 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 7 33 609 1275 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 5 31 607 1272 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 9 35 611 1276 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 9 35 610 1276 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 148 G C - - MP 42 41 6 46 4 9 34 609 1275 -12.699 -12.906 -0.001 -11.320 -8.347 -6.827 -8.237 0.926 -9.368 -8.575 -1.281 -8.861 -8.366 3.662 -8.635 -3.385 -0.171 -8.003 -6.445 -7.179 ML 43 41 6 46 4 7 33 608 1274 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 6 32 608 1273 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 5 31 606 1272 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 8 34 609 1275 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 7 33 609 1274 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 7 32 607 1273 -13.610 -0.000 -12.264 -8.868 -4.371 -9.722 1.981 D 49 47 6 50 3 5 31 606 1271 -6.174 -1.687 -0.566 IL 50 50 3 50 3 7 33 608 1273 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 6 31 606 1272 -14.261 -0.000 1.989 -9.491 -5.180 -8.908 D 52 50 3 53 2 5 30 605 1271 -8.445 -0.004 IL 53 53 3 53 2 6 32 607 1272 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 5 30 605 1271 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 0 72 150 -13.610 -0.000 -12.264 IL 56 56 2 56 3 1 1 74 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 107 - u - - - ML 57 56 2 59 3 1 1 72 150 -13.610 -0.000 -12.264 0.542 -1.217 -2.640 0.966 D 58 56 2 59 3 0 0 68 145 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 73 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 108 - G - - - ML 60 59 3 62 3 1 1 71 149 -3.955 -0.096 -12.264 -6.962 -5.365 1.593 -0.071 D 61 59 3 62 3 0 0 64 141 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 82 159 -0.342 -6.062 -2.349 0.000 0.000 0.000 0.000 [ MATL 46 ] 128 - G - - - ML 63 62 3 65 3 1 1 30 48 -13.514 -0.000 -12.168 -8.065 -9.838 1.997 -8.826 D 64 62 3 65 3 0 0 28 47 -11.119 -6.632 -0.015 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 129 - U - - - ML 66 65 3 68 3 1 1 29 47 -13.514 -0.000 -12.168 -8.275 -3.053 -9.075 1.954 D 67 65 3 68 3 0 0 27 45 -11.119 -6.632 -0.015 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 130 - C - - - ML 69 68 3 71 5 1 1 28 46 -12.451 -0.001 -12.267 -12.479 -13.370 -9.404 1.998 -9.977 -8.219 D 70 68 3 71 5 0 0 24 42 -9.111 -4.955 -8.372 -6.747 -0.069 IL 71 71 3 71 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 131 147 C G - - MP 72 71 3 76 6 2 2 27 45 -13.418 -13.357 -0.001 -12.134 -12.413 -12.808 -9.324 -7.990 -9.468 1.436 -11.150 -11.860 3.038 -9.555 -9.115 2.247 -9.741 -1.719 -6.681 -10.464 -8.459 -8.111 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 22 41 -13.599 -12.297 -8.094 -8.776 -8.794 -0.012 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 132 146 C G - - MP 78 77 6 82 6 2 2 25 43 -13.418 -13.357 -0.001 -12.134 -12.413 -12.808 -8.160 -7.884 -8.107 0.004 -6.920 -8.866 3.188 -7.603 -7.988 1.993 -8.464 -5.477 0.283 -8.317 -0.694 -6.714 ML 79 77 6 82 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 22 41 -13.599 -12.297 -8.094 -0.060 -8.794 -4.869 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 133 145 a u - - MP 84 83 6 88 6 2 2 23 41 -13.418 -13.357 -0.001 -12.134 -12.413 -12.808 -9.109 -7.989 -8.946 2.981 -8.738 -9.751 1.565 -8.930 -8.995 2.186 -9.364 -5.515 -0.895 -9.244 -6.262 -7.770 ML 85 83 6 88 6 1 1 22 41 -10.468 -10.814 -5.529 -0.039 -10.664 -8.194 -4.560 -6.142 1.970 -5.294 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 134 144 G C - - MP 90 89 6 94 6 2 2 21 39 -13.418 -13.357 -0.001 -12.134 -12.413 -12.808 -11.174 -7.984 -12.861 -1.041 -12.778 -9.202 -1.663 -12.540 -9.338 3.923 -9.551 -5.883 -7.586 -9.646 -9.625 -11.718 ML 91 89 6 94 6 1 1 21 40 -10.468 -10.814 -0.047 -5.223 -10.664 -8.194 1.973 -5.653 -5.076 -5.320 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 135 143 G C - - MP 96 95 6 100 4 2 2 19 37 -12.699 -12.906 -0.001 -11.320 -11.445 -8.070 -13.767 -5.547 -13.065 -9.233 -7.368 -13.221 -9.439 3.995 -9.631 -6.003 -7.734 -9.700 -9.817 -12.859 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 136 - U - - - ML 102 101 6 104 3 1 1 16 34 -13.610 -0.000 -12.264 -10.607 -9.388 -11.980 1.999 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 137 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.610 -0.000 -12.264 -8.668 -3.823 -9.498 1.973 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 138 - C - - - ML 108 107 3 110 3 1 1 14 32 -13.610 -0.000 -12.264 -9.527 1.998 -10.109 -8.327 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 139 - G - - - ML 111 110 3 113 3 1 1 12 31 -13.610 -0.000 -12.264 -0.528 -9.201 1.723 -8.518 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 140 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.610 -0.000 -12.264 1.998 -9.634 -8.870 -8.980 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 141 - G - - - ML 117 116 3 119 3 1 1 9 28 -13.610 -0.000 -12.264 0.289 -7.306 1.438 -4.013 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 142 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -3.689 -0.318 -7.161 1.638 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 584 1249 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 0 15 584 1249 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 26 45 -0.002 -11.625 -11.032 -11.672 [ MATP 15 ] 10 28 G C - - MP 127 126 1 131 6 2 2 26 45 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -11.085 -8.080 -12.401 0.775 -12.890 -9.374 -7.364 -12.211 -9.421 3.833 -9.660 -5.938 -7.676 -9.790 -9.735 -11.153 ML 128 126 1 131 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G - - MP 133 132 6 137 6 2 2 24 43 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -10.528 -10.808 -9.846 -7.044 -8.197 -9.991 3.964 -9.112 -9.950 -7.017 -10.070 -9.208 -1.545 -10.363 -5.900 -8.751 ML 134 132 6 137 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 U A - - MP 139 138 6 143 6 2 2 22 41 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -12.373 -12.044 -12.240 -11.391 -10.439 -12.108 -10.149 -11.913 -10.369 -11.402 -12.437 -11.879 3.996 -10.468 -5.708 -5.499 ML 140 138 6 143 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 C G - - MP 145 144 6 149 4 2 2 20 39 -12.699 -12.906 -0.001 -11.320 -10.528 -10.810 -9.846 -2.615 -8.197 -2.044 3.714 -3.613 -9.950 -7.018 -10.070 -9.212 -4.929 -10.363 1.222 -8.751 ML 146 144 6 149 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 1 17 36 -13.610 -0.000 -12.264 1.998 -9.634 -8.870 -8.980 D 152 150 6 153 3 0 0 20 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 1 16 35 -13.610 -0.000 -12.264 -8.159 -9.932 1.998 -8.919 D 155 153 3 156 3 0 0 19 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - - - ML 157 156 3 159 3 1 1 15 33 -13.610 -0.000 -12.264 -1.617 0.996 -6.836 0.741 D 158 156 3 159 3 0 0 18 36 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - u - - - ML 160 159 3 162 3 1 1 14 32 -1.480 -0.641 -12.264 0.181 -0.350 -2.928 0.963 D 161 159 3 162 3 0 0 15 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 13 32 -6.857 -0.014 -9.557 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - - - ML 163 162 3 165 3 1 1 12 30 -13.610 -0.000 -12.264 -8.159 -9.932 1.998 -8.919 D 164 162 3 165 3 0 0 16 34 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 1 11 29 -13.610 -0.000 -12.264 -8.159 -9.932 1.998 -8.919 D 167 165 3 168 3 0 0 14 33 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - - - ML 169 168 3 171 3 1 1 9 18 -3.317 -0.153 -12.264 -4.872 -1.203 -7.228 1.818 D 170 168 3 171 3 0 0 7 16 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 9 18 -3.057 -0.191 -7.946 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.842 -8.514 -1.291 -8.362 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 0 567 1233 -13.610 -0.000 -12.264 IL 177 177 2 177 3 1 1 568 1234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 178 177 2 180 5 1 1 567 1233 -12.547 -0.001 -12.362 -12.574 -13.466 -0.226 -8.969 1.651 -8.416 D 179 177 2 180 5 0 0 564 1229 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 567 1232 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 106 C G - - MP 181 180 3 185 6 2 2 566 1232 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -7.879 -7.560 -7.880 -0.003 -6.760 -8.733 3.112 -7.404 -7.736 0.401 -8.250 0.924 1.300 -8.071 -4.222 -0.783 ML 182 180 3 185 6 1 1 563 1229 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 562 1228 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 557 1222 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 565 1230 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 565 1230 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 105 C G - - MP 187 186 6 191 6 2 2 564 1230 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -10.171 -10.179 -9.654 -1.429 -8.116 -9.929 3.698 -8.975 -9.697 -0.382 -9.901 -8.139 0.884 -10.127 -5.786 -8.492 ML 188 186 6 191 6 1 1 561 1227 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 560 1226 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 555 1221 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 563 1228 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 563 1228 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 104 g c - - MP 193 192 6 197 6 2 2 562 1228 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -9.024 -8.489 -8.844 -0.520 -7.765 -9.451 1.727 -8.422 -8.813 2.881 -9.191 -6.114 2.189 -9.097 -5.310 -7.564 ML 194 192 6 197 6 1 1 559 1225 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 558 1224 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 554 1219 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 561 1226 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 561 1226 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 103 G C - - MP 199 198 6 203 6 2 2 560 1226 -13.511 -13.450 -0.001 -12.227 -12.507 -12.902 -11.171 -8.086 -12.603 -5.445 -12.650 -9.334 0.966 -12.333 -9.429 3.699 -9.653 0.026 -7.618 -9.764 -9.596 -11.407 ML 200 198 6 203 6 1 1 558 1223 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 556 1221 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 552 1218 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 559 1225 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 559 1224 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 102 G C - - MP 205 204 6 209 4 2 2 558 1224 -12.699 -12.906 -0.001 -11.320 -10.726 -8.083 -11.550 1.532 -12.519 -9.543 -2.376 -11.494 -9.394 3.687 -9.683 -5.859 -7.524 -9.873 -9.507 -10.244 ML 206 204 6 209 4 1 1 556 1222 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 553 1219 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 551 1217 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 558 1223 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 557 1223 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - - - ML 211 210 6 213 3 1 1 556 1222 -13.610 -0.000 -12.264 -8.576 1.953 -8.964 -3.005 D 212 210 6 213 3 0 0 549 1214 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 556 1221 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 214 213 3 216 3 1 1 555 1221 -13.610 -0.000 -12.264 -10.607 -9.388 -11.980 1.999 D 215 213 3 216 3 0 0 545 1211 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 555 1220 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - u - - - ML 217 216 3 219 3 1 1 554 1220 -13.610 -0.000 -12.264 0.015 -0.016 -0.017 0.017 D 218 216 3 219 3 0 0 540 1205 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 553 1219 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - u - - - ML 220 219 3 222 3 1 1 553 1219 -13.610 -0.000 -12.264 0.015 -0.016 -0.017 0.017 D 221 219 3 222 3 0 0 531 1196 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 552 1217 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - u - - - ML 223 222 3 225 3 1 1 552 1218 -13.610 -0.000 -12.264 0.015 -0.016 -0.017 0.017 D 224 222 3 225 3 0 0 513 1178 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 549 1215 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 226 225 3 228 3 1 1 551 1217 -1.348 -0.721 -12.264 1.998 -9.634 -8.870 -8.980 D 227 225 3 228 3 0 0 429 1095 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 584 1249 -0.040 -5.197 -14.870 0.000 0.000 0.000 0.000 [ MATL 41 ] 101 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.956 -3.126 -8.501 -8.340 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME arch-Asn ACC arch-Asn-r2-033017 LENG 73 MAXL 606 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:18:25 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Asn-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Asn-r2-033017.sto NSEQ 188 EFFN 4.087830 CKSUM 1584467930 STATS LOCAL MSV -8.2402 0.71893 STATS LOCAL VITERBI -9.1796 0.71893 STATS LOCAL FORWARD -3.3157 0.71893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59803 1.33101 1.15364 1.52322 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 0.00000 * 1 2.02653 2.90226 0.28680 2.77024 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03033 4.28461 4.12924 1.46634 0.26236 1.09861 0.40547 2 3.59060 0.17811 3.29291 2.31849 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02801 4.28229 4.28229 1.46634 0.26236 1.15313 0.37928 3 3.91963 0.11660 3.77598 2.69862 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02801 4.28229 4.28229 1.46634 0.26236 1.15313 0.37928 4 1.85901 2.26221 0.49704 2.02703 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02801 4.28229 4.28229 1.46634 0.26236 0.99776 0.45998 5 2.02586 0.92038 1.46231 1.43527 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 6 1.92461 1.08333 1.23127 1.49754 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 7 1.77164 2.44607 0.45018 2.24622 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 8 3.06423 2.83730 3.58929 0.14259 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 9 0.09000 3.78594 3.34577 3.57034 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 10 2.14856 3.43062 0.20527 3.30889 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 11 3.73780 0.15559 3.56939 2.38474 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 12 3.84376 2.59379 3.67889 0.12943 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 13 2.52653 0.53144 2.37283 1.43091 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 14 0.07493 3.92445 3.58853 3.69710 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 15 3.36904 4.32238 0.07080 3.87958 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 16 1.80687 0.96427 2.57932 0.97089 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 17 1.27723 1.57660 2.17428 0.91423 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.32833 1.32391 4.28461 0.10053 2.34715 1.09861 0.40547 18 3.36904 4.32238 0.07080 3.87958 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 19 3.36904 4.32238 0.07080 3.87958 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 20 2.49704 2.02135 3.04768 0.30418 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10329 2.47272 4.28461 0.37168 1.16981 1.09861 0.40547 21 0.24229 3.13339 2.16627 2.86479 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 22 1.99827 2.45923 0.38883 2.29184 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 23 0.14788 3.86600 2.42629 3.56996 26 A - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 24 2.63399 3.71488 0.13564 3.48378 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 25 3.49194 0.23953 3.23856 1.94254 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 26 1.53018 3.10834 0.39444 2.73687 29 G - - , 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 27 1.94736 1.01523 1.49740 1.30446 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 28 2.44914 0.57680 2.10335 1.47015 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 29 1.99604 1.43543 1.01214 1.33684 32 g - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 30 2.15237 2.21675 0.35830 2.57750 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 31 1.76754 2.90252 0.33276 2.85739 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 32 3.33060 0.14368 3.89810 2.55379 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 33 3.26938 3.12702 3.80594 0.10994 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 34 1.26720 1.52612 1.54660 1.24468 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 35 1.26720 1.52612 1.54660 1.24468 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 36 1.26720 1.52612 1.54660 1.24468 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 37 0.07493 3.92445 3.58853 3.69710 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.36246 1.23699 4.28461 3.58817 0.02804 1.09861 0.40547 38 0.14753 3.04834 3.14282 3.06686 101 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 39 3.09840 0.37824 2.73250 1.58594 102 C - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 40 2.82742 0.43952 2.09914 1.74914 103 C - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 41 1.48917 1.09547 1.30857 1.77283 104 c - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 42 1.65621 2.24647 0.51738 2.23223 105 G - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 43 1.52956 1.79989 0.91035 1.53401 106 g - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 44 1.14395 1.80139 2.12423 0.92420 107 u - - , 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 45 2.11721 2.63966 0.49797 1.60703 108 G - - , 1.38629 1.38629 1.38629 1.38629 0.07566 2.82874 4.28461 1.39907 0.28346 1.09861 0.40547 46 3.28868 4.23430 0.07715 3.79611 128 G - - , 1.38629 1.38629 1.38629 1.38629 0.07566 4.28461 2.82874 1.46634 0.26236 1.09861 0.40547 47 2.84258 2.54796 3.36204 0.18775 129 U - - , 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 1.83868 0.17320 48 3.55922 0.10067 4.11055 2.97774 130 C - - , 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 1.83868 0.17320 49 1.73047 1.11950 1.14512 1.72503 131 c - - < 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 1.83868 0.17320 50 2.03307 0.94982 1.42590 1.41895 132 c - - < 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 0.38281 1.14553 51 1.26759 1.64059 1.00568 1.83994 133 g - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 52 2.43878 3.14301 0.18647 3.22651 134 G - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 53 3.03447 3.89937 0.09416 3.83921 135 G - - < 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 54 3.26938 3.12702 3.80594 0.10994 136 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 55 3.00370 2.74479 3.52624 0.15464 137 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 56 3.65717 0.09165 4.19970 3.06244 138 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 57 1.69858 3.20643 0.33139 2.83647 139 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 58 0.07493 3.92445 3.58853 3.69710 140 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 59 1.23246 2.81378 0.58898 2.36922 141 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 60 2.23977 1.64337 2.83521 0.44397 142 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 61 3.99752 0.11356 3.75464 2.72454 143 C - - > 1.38629 1.38629 1.38629 1.38629 0.07566 4.28461 2.82874 1.46634 0.26236 1.09861 0.40547 62 3.44514 0.21181 2.99767 2.21566 144 C - - > 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 1.83868 0.17320 63 2.06086 1.11221 1.50529 1.13360 145 c - - > 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 1.83868 0.17320 64 1.67182 1.53430 0.83076 1.82779 146 g - - > 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 1.83868 0.17320 65 1.95452 1.26671 1.02625 1.52205 147 g - - > 1.38629 1.38629 1.38629 1.38629 0.02929 4.23824 4.23824 1.46634 0.26236 0.38281 1.14553 66 2.45524 0.51307 2.27594 1.54738 148 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 67 1.73350 1.32733 0.96603 1.72844 149 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 68 1.66269 1.57139 0.81675 1.82791 150 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 69 2.41631 0.55143 2.08091 1.56157 151 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 70 2.97805 3.94420 0.09976 3.70159 152 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 71 2.56948 3.44148 0.15467 3.36085 153 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 72 2.63005 0.32971 2.72258 1.94427 154 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02794 4.28461 4.28461 1.46634 0.26236 1.09861 0.40547 73 2.57627 2.80552 0.21021 2.93639 155 G - - : 1.38629 1.38629 1.38629 1.38629 0.28023 1.40898 * 1.12011 0.39489 0.00000 * // INFERNAL1/a [1.1.2 | July 2016] NAME arch-Asp ACC arch-Asp-r2-033017 STATES 233 NODES 62 CLEN 73 W 714 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:43:51 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Asp-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Asp-r2-033017.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asp-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asp-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asp-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Asp-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Asp-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 203 EFFN 203.000000 CKSUM 2350333242 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.6071 0.71900 ECMLC 0.53990 -8.85432 2.79618 1600000 647081 0.001854 ECMGC 0.31122 -45.21616 -29.60552 1600000 51524 0.007763 ECMLI 0.57224 -7.74649 3.18744 1600000 625909 0.001917 ECMGI 0.33937 -40.82237 -26.68847 1600000 48442 0.008257 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 714 1506 -12.605 -13.850 -0.001 -10.303 IL 1 1 2 1 4 11 39 716 1508 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 12 41 716 1509 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 157 - G - - MR 3 2 3 5 5 18 44 715 1507 -12.656 -0.001 -12.472 -12.684 -13.576 -0.876 -9.559 1.787 -8.755 D 4 2 3 5 5 9 34 712 1504 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 11 39 715 1507 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 156 G C - - MP 6 5 3 10 6 18 43 714 1506 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -11.557 -3.193 -13.907 -5.655 -13.185 -9.338 -7.478 -13.351 -9.546 3.985 -9.737 -6.110 -7.844 -9.806 -9.930 -13.012 ML 7 5 3 10 6 10 36 712 1504 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 10 36 711 1503 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 8 31 706 1498 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 11 38 713 1505 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 11 38 713 1505 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 155 C G - - MP 12 11 6 16 6 16 41 712 1504 -13.618 -13.557 -0.114 -12.334 -3.732 -13.008 -10.638 -10.920 -9.956 -7.157 -8.306 -10.100 3.803 -9.222 -10.060 -7.129 -10.180 -9.324 -0.395 -10.473 0.326 -8.861 ML 13 11 6 16 6 10 36 710 1502 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 10 36 709 1501 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 8 31 704 1496 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 11 37 711 1504 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 11 38 711 1503 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 154 C G - - MP 18 17 6 22 6 17 40 711 1503 -13.505 -13.444 -0.001 -12.221 -12.501 -12.896 -10.522 -10.802 -9.840 -7.039 -8.191 -9.985 3.945 -9.106 -9.944 -7.011 -10.064 -9.203 -0.860 -10.357 -5.894 -8.745 ML 19 17 6 22 6 10 35 708 1500 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 36 706 1499 -11.365 -10.094 -6.002 -10.072 -0.031 -8.285 -4.907 -6.542 1.977 -5.645 D 21 17 6 22 6 7 31 703 1495 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 11 37 709 1502 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 11 37 709 1502 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 153 C G - - MP 24 23 6 28 6 16 38 709 1501 -13.505 -13.444 -0.001 -12.221 -12.501 -12.896 -10.518 -10.794 -9.838 -7.029 -8.190 -9.984 3.806 -9.104 -9.940 0.561 -10.062 -9.187 -1.338 -10.354 -3.077 -8.742 ML 25 23 6 28 6 10 34 706 1498 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 11 35 705 1497 -11.365 -10.094 -3.328 -10.072 -0.160 -8.285 -3.523 1.413 0.174 -3.034 D 27 23 6 28 6 7 30 702 1494 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 10 36 708 1500 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 11 36 707 1500 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 152 c g - - MP 30 29 6 34 6 14 36 707 1499 -13.515 -13.455 -0.001 -12.231 -12.511 -12.906 -8.966 -8.506 -8.800 0.224 -7.675 -9.437 2.815 -8.346 -8.753 2.605 -9.147 -6.125 0.712 -9.067 -5.217 -7.499 ML 31 29 6 34 6 10 34 705 1497 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 10 34 704 1496 -11.238 -9.967 -5.876 -9.945 -0.034 -8.159 -4.784 -6.401 1.975 -5.520 D 33 29 6 34 6 7 30 701 1493 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 10 35 706 1498 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 10 35 706 1498 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 151 G C - - MP 36 35 6 40 6 12 34 705 1497 -13.515 -13.455 -0.001 -12.231 -12.511 -12.906 -7.562 -6.195 -7.384 0.753 -8.512 -7.972 -0.765 -8.069 -7.808 3.646 -8.056 -0.400 -2.408 -7.236 -2.313 -6.348 ML 37 35 6 40 6 9 32 703 1495 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 9 33 703 1495 -11.238 -9.967 -0.511 -9.945 -1.775 -8.159 -5.376 1.969 -5.862 -4.478 D 39 35 6 40 6 7 30 700 1493 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 10 33 704 1496 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 10 33 704 1496 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 150 G C - - MP 42 41 6 46 4 10 32 703 1495 -12.780 -12.987 -0.001 -11.401 -10.860 -8.166 -11.751 1.198 -12.738 -9.607 -7.395 -11.674 -9.480 3.757 -9.764 -5.951 -2.736 -9.954 -9.682 -10.440 ML 43 41 6 46 4 8 31 702 1494 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 8 30 701 1493 -7.566 -6.595 -4.462 -0.091 -3.227 1.863 -4.014 -2.375 D 45 41 6 46 4 7 30 700 1492 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 9 32 702 1495 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 9 32 702 1494 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 8 30 701 1493 -13.691 -0.000 -12.345 -9.179 -4.862 -10.065 1.987 D 49 47 6 50 3 7 29 699 1492 -9.598 -0.096 -3.990 IL 50 50 3 50 3 8 31 701 1493 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - a - - - ML 51 50 3 53 2 7 29 700 1492 -14.371 -0.000 0.910 -1.736 0.860 -7.604 D 52 50 3 53 2 6 28 699 1491 -8.445 -0.004 IL 53 53 3 53 2 7 30 700 1492 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 6 28 699 1491 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 0 31 49 -13.720 -0.000 -12.374 IL 56 56 2 56 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 110 - c - - - ML 57 56 2 59 3 1 1 31 49 -13.720 -0.000 -12.374 -1.551 0.810 -1.462 0.625 D 58 56 2 59 3 0 0 33 51 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 111 - G - - - ML 60 59 3 62 3 1 1 30 48 -13.720 -0.000 -12.374 -8.266 -10.038 1.998 -9.025 D 61 59 3 62 3 0 0 31 50 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 130 - A - - - ML 63 62 3 65 3 1 1 29 47 -5.766 -0.027 -12.374 1.980 -4.345 -8.784 -8.762 D 64 62 3 65 3 0 0 27 46 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 29 47 -3.162 -0.199 -5.862 0.000 0.000 0.000 0.000 [ MATL 48 ] 132 - C - - - ML 66 65 3 68 5 1 1 28 46 -12.656 -0.001 -12.472 -12.684 -13.576 -9.668 1.998 -10.261 -8.451 D 67 65 3 68 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 133 149 C G - - MP 69 68 3 73 6 2 2 27 45 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -8.567 -8.315 -8.482 -0.746 -7.258 -9.197 3.268 -7.960 -8.375 0.611 -8.830 -5.926 0.739 -8.711 1.334 -7.104 ML 70 68 3 73 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 134 148 C G - - MP 75 74 6 79 6 2 2 25 43 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -10.639 -10.920 -9.956 -7.157 -8.306 -10.100 3.964 -9.222 -10.060 -7.129 -10.180 -9.324 -2.073 -10.473 -3.007 -8.861 ML 76 74 6 79 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 135 147 G C - - MP 81 80 6 85 6 2 2 23 41 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -11.553 -8.177 -13.884 -5.654 -13.173 -9.339 -7.475 -13.334 -9.546 3.995 -9.738 -6.110 -7.841 -9.806 -9.924 -12.980 ML 82 80 6 85 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 136 146 G C - - MP 87 86 6 91 6 2 2 21 39 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -11.547 -8.177 -13.853 -2.545 -13.179 -9.341 -7.478 -13.316 -9.545 3.955 -9.738 -6.108 -7.842 -1.809 -9.927 -12.934 ML 88 86 6 91 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 137 145 G C - - MP 93 92 6 97 4 2 2 19 37 -12.809 -13.016 -0.001 -11.430 -11.324 -8.183 -12.910 0.024 -13.068 -9.423 -7.474 -12.641 -9.535 3.902 -9.755 -6.070 -7.807 -9.860 -9.876 -11.725 ML 94 92 6 97 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 138 - U - - - ML 99 98 6 101 3 1 1 16 34 -13.720 -0.000 -12.374 -10.746 -9.511 -12.137 1.999 D 100 98 6 101 3 0 0 19 37 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 139 - U - - - ML 102 101 3 104 3 1 1 15 33 -13.720 -0.000 -12.374 -6.087 -5.984 -6.526 1.985 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 140 - C - - - ML 105 104 3 107 3 1 1 13 32 -13.720 -0.000 -12.374 -4.235 1.941 -4.264 -4.182 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 141 - A - - - ML 108 107 3 110 3 1 1 12 31 -13.720 -0.000 -12.374 1.500 -4.134 0.080 -4.120 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 142 - A - - - ML 111 110 3 113 3 1 1 11 29 -13.720 -0.000 -12.374 1.942 -4.238 -4.279 -4.222 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 143 - A - - - ML 114 113 3 116 3 1 1 9 27 -13.720 -0.000 -12.374 1.908 -4.541 -3.146 -3.440 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 144 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -10.746 -9.511 -12.137 1.999 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 0 9 678 1470 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 176 0 9 678 1470 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 1 69 139 -0.029 -11.733 -5.671 -11.780 [ MATP 15 ] 10 33 G U - - MP 124 123 1 128 6 2 4 69 139 -13.590 -13.529 -0.001 -12.306 -12.586 -12.981 -9.608 -8.274 -9.796 -4.586 -11.749 -12.974 -7.238 -9.827 -9.361 -4.934 -10.026 3.991 -7.252 -11.090 -9.086 -8.397 ML 125 123 1 128 6 1 1 66 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 62 132 -9.572 -8.301 -4.210 -8.279 -3.413 -0.244 -2.820 -4.191 1.895 -3.555 D 127 123 1 128 6 0 0 61 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 68 138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 68 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 32 U A - - MP 130 129 6 134 6 2 3 67 137 -13.590 -13.529 -0.076 -4.303 -12.586 -12.981 -10.027 -9.059 -9.863 -5.362 -9.150 -10.881 -4.842 -9.476 -9.659 1.795 -10.087 -6.462 3.637 -10.728 -6.819 -8.602 ML 131 129 6 134 6 1 1 64 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 65 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 58 128 -12.106 -10.805 -6.602 -7.284 -7.301 -0.035 IL 134 134 5 134 6 1 1 66 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 66 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 31 G C - - MP 136 135 6 140 6 2 4 65 135 -13.515 -13.455 -0.001 -12.231 -12.511 -12.906 -1.711 -2.134 -7.504 1.041 -8.638 -8.090 -0.121 -8.177 -7.899 3.607 -8.155 -3.933 -3.973 -7.362 -2.862 -6.462 ML 137 135 6 140 6 1 1 59 129 -10.250 -10.596 -5.311 -5.005 -10.446 -0.087 -4.334 -5.881 1.965 -5.067 MR 138 135 6 140 6 1 1 63 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 57 127 -12.106 -10.805 -6.602 -7.284 -7.301 -0.035 IL 140 140 5 140 6 1 1 64 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 64 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 30 U U - - MP 142 141 6 146 4 2 4 63 133 -12.703 -12.910 -0.001 -11.324 -10.532 -10.810 -9.851 -7.047 -8.202 -9.996 -1.843 -9.117 -9.954 -7.020 -10.074 -9.206 -1.965 -10.368 1.753 3.593 ML 143 141 6 146 4 1 1 62 132 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 61 131 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 57 127 -9.252 -8.933 -6.949 -0.017 IL 146 146 5 146 4 1 1 63 133 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 63 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 148 147 6 150 3 1 3 61 131 -13.614 -0.000 -12.269 1.998 -9.638 -8.874 -8.984 D 149 147 6 150 3 0 0 57 127 -11.349 -6.862 -0.013 IL 150 150 3 150 3 1 1 62 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 151 150 3 153 3 1 2 60 130 -13.614 -0.000 -12.269 -8.163 -9.936 1.998 -8.923 D 152 150 3 153 3 0 0 57 127 -11.349 -6.862 -0.013 IL 153 153 3 153 3 1 1 61 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 154 153 3 156 3 1 1 59 129 -1.114 -0.895 -12.269 -1.896 1.062 -2.606 0.566 D 155 153 3 156 3 0 0 57 127 -11.349 -0.028 -5.740 IL 156 156 3 156 3 1 1 59 129 -1.018 -0.984 -10.892 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - G - - - ML 157 156 3 159 3 1 1 57 127 -13.720 -0.000 -12.374 -8.266 -10.038 1.998 -9.025 D 158 156 3 159 3 0 0 54 124 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 57 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 160 159 3 162 3 1 1 56 126 -13.720 -0.000 -12.374 -8.266 -10.038 1.998 -9.025 D 161 159 3 162 3 0 0 53 123 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 56 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - C - - - ML 163 162 3 165 3 1 1 55 125 -13.720 -0.340 -2.254 -0.240 1.323 -6.947 -0.635 D 164 162 3 165 3 0 0 51 121 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 56 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - C - - - ML 166 165 3 168 3 1 1 55 125 -3.793 -0.108 -12.035 -1.756 1.825 -7.542 -2.681 D 167 165 3 168 3 0 0 30 100 -12.897 -0.009 -7.289 IL 168 168 3 168 3 1 1 64 134 -0.379 -2.124 -9.214 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - U - - - ML 169 168 3 171 3 1 1 9 27 -13.720 -0.000 -12.374 -6.485 -0.070 -3.211 1.550 D 170 168 3 171 3 0 0 13 32 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.998 -9.737 -8.973 -9.082 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 176 122 1 177 3 0 0 660 1452 -13.720 -0.000 -12.374 IL 177 177 2 177 3 1 1 661 1454 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - G - - - ML 178 177 2 180 5 1 1 660 1452 -12.656 -0.001 -12.472 -12.684 -13.576 0.098 -3.426 1.446 -3.164 D 179 177 2 180 5 0 0 657 1449 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 660 1452 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 109 C G - - MP 181 180 3 185 6 2 2 659 1451 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -8.151 -7.610 -8.105 0.651 -7.178 -8.895 3.229 -7.762 -8.047 1.704 -8.515 -0.216 -1.856 -8.255 -0.696 -6.752 ML 182 180 3 185 6 1 1 656 1448 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 655 1447 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 649 1441 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 658 1450 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 658 1450 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 108 G C - - MP 187 186 6 191 6 2 2 657 1449 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -7.732 -6.361 -7.559 1.624 -8.695 -8.150 -0.094 -8.237 -7.966 3.434 -8.220 -0.495 -1.347 -7.417 -5.771 -6.519 ML 188 186 6 191 6 1 1 654 1446 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 653 1445 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 648 1440 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 656 1448 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 656 1448 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 107 G C - - MP 193 192 6 197 6 2 2 655 1447 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -10.268 -7.998 -10.602 1.040 -11.333 -9.484 -2.206 -10.841 -9.346 3.747 -9.623 -5.752 -1.898 -9.583 -8.492 -9.444 ML 194 192 6 197 6 1 1 652 1445 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 651 1443 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 646 1438 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 654 1446 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 654 1446 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 106 G C - - MP 199 198 6 203 6 2 2 653 1445 -13.618 -13.557 -0.001 -12.334 -12.613 -13.008 -11.257 -8.392 -11.974 -5.759 -10.701 -9.481 1.599 -11.364 -9.611 3.691 -9.809 -6.309 -6.864 -9.923 -8.214 -10.871 ML 200 198 6 203 6 1 1 651 1443 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 648 1441 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 645 1437 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 652 1444 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 652 1444 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 39 105 C G - - MP 205 204 6 209 4 2 2 651 1443 -12.809 -13.016 -0.001 -11.430 -10.541 -10.514 -9.941 0.485 -8.384 -10.174 3.813 -9.247 -10.000 -2.196 -10.165 -8.498 -1.741 -10.495 -6.083 -8.822 ML 206 204 6 209 4 1 1 649 1441 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 645 1438 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 643 1436 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 650 1443 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 650 1442 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - C - - - ML 211 210 6 213 3 1 1 649 1441 -13.720 -0.000 -12.374 -9.668 1.998 -10.261 -8.451 D 212 210 6 213 3 0 0 641 1433 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 649 1441 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - - - ML 214 213 3 216 3 1 1 648 1440 -13.720 -0.000 -12.374 -10.746 -9.511 -12.137 1.999 D 215 213 3 216 3 0 0 636 1429 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 647 1440 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - g - - - ML 217 216 3 219 3 1 1 647 1439 -13.720 -0.000 -12.374 -0.057 -0.087 0.083 0.054 D 218 216 3 219 3 0 0 630 1423 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 646 1438 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - u - - - ML 220 219 3 222 3 1 1 646 1438 -6.487 -0.016 -12.374 -0.057 -0.087 -0.088 0.210 D 221 219 3 222 3 0 0 620 1412 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 646 1438 -1.104 -0.944 -6.059 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - c - - - ML 223 222 3 225 3 1 1 645 1437 -13.720 -0.000 -12.374 -0.074 0.224 -0.105 -0.071 D 224 222 3 225 3 0 0 599 1392 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 642 1434 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - G - - - ML 226 225 3 228 3 1 1 644 1436 -1.732 -0.517 -12.374 0.380 -8.699 1.430 -8.435 D 227 225 3 228 3 0 0 511 1303 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 695 1487 -0.034 -5.445 -14.847 0.000 0.000 0.000 0.000 [ MATL 42 ] 104 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.587 -0.019 -8.093 -7.361 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME arch-Asp ACC arch-Asp-r2-033017 LENG 73 MAXL 690 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:43:51 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Asp-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Asp-r2-033017.sto NSEQ 203 EFFN 3.875015 CKSUM 2350333242 STATS LOCAL MSV -8.5713 0.71900 STATS LOCAL VITERBI -9.2650 0.71900 STATS LOCAL FORWARD -3.0043 0.71900 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.63754 1.29107 1.16324 1.52284 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 0.00000 * 1 2.86072 3.79030 0.11056 3.69467 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 2 3.11086 0.36967 2.90213 1.56270 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.08556 4.23216 2.69592 1.46634 0.26236 1.09861 0.40547 3 3.45626 0.21039 3.26991 2.11884 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03115 4.17775 4.17775 1.46634 0.26236 1.89418 0.16304 4 2.71453 0.46941 2.03868 1.72490 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03115 4.17775 4.17775 1.46634 0.26236 1.61521 0.22171 5 1.93599 1.15169 1.14030 1.51461 5 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03099 4.18267 4.18267 1.46634 0.26236 1.84456 0.17209 6 1.74141 2.33473 0.47286 2.25691 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03099 4.18267 4.18267 1.46634 0.26236 0.61971 0.77241 7 1.88806 3.03435 0.29767 2.84766 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02988 4.21868 4.21868 1.46634 0.26236 1.36651 0.29436 8 3.03060 2.84501 3.55705 0.14496 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02988 4.21868 4.21868 1.46634 0.26236 0.71333 0.67336 9 0.91594 2.15788 1.05045 2.00610 9 a - - , 1.38629 1.38629 1.38629 1.38629 0.04335 4.23216 3.57897 1.46634 0.26236 1.09861 0.40547 10 2.21773 3.47534 0.19465 3.29487 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02988 4.21868 4.21868 1.46634 0.26236 1.36651 0.29436 11 2.37920 1.75226 1.45506 0.69193 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.02988 4.21868 4.21868 1.46634 0.26236 1.36651 0.29436 12 1.61819 2.19819 0.55139 2.16638 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.06701 4.21868 2.99383 1.46634 0.26236 1.36651 0.29436 13 2.91668 1.73908 2.73946 0.34871 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03099 4.18267 4.18267 1.46634 0.26236 1.84456 0.17209 14 0.08880 3.76183 3.43843 3.51948 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03099 4.18267 4.18267 1.46634 0.26236 1.84456 0.17209 15 3.21669 4.15519 0.08337 3.72048 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03099 4.18267 4.18267 1.46634 0.26236 1.84456 0.17209 16 1.74940 0.98210 2.29079 1.04865 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.41623 1.12327 4.18267 0.71655 0.67028 0.38007 1.15141 17 3.30518 4.25240 0.07580 3.81333 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 18 3.30518 4.25240 0.07580 3.81333 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 19 1.47245 0.81705 2.50774 1.39654 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.18982 4.23216 1.84281 1.46634 0.26236 1.09861 0.40547 20 2.07987 0.40516 2.91179 1.87208 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08295 2.77035 4.07685 1.51003 0.24962 0.16837 1.86457 21 2.15383 1.52764 2.55364 0.52913 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 22 0.08048 3.85583 3.52502 3.62235 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08048 4.23216 2.76767 1.46634 0.26236 1.09861 0.40547 23 2.18248 2.91794 1.11590 0.68206 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.03099 4.18267 4.18267 1.46634 0.26236 1.84456 0.17209 24 2.38987 0.61933 2.01623 1.44014 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03099 4.18267 4.18267 1.46634 0.26236 0.61971 0.77241 25 0.76564 1.55735 1.58852 2.11990 32 a - - > 1.38629 1.38629 1.38629 1.38629 0.02988 4.21868 4.21868 1.46634 0.26236 0.71333 0.67336 26 3.39307 2.37373 3.16708 0.18496 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 27 1.30149 2.48752 0.64850 2.10432 34 G - - , 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 28 1.89805 0.99556 1.35656 1.50023 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 29 1.60424 2.26411 0.52842 2.24905 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 30 1.84503 2.71754 0.35510 2.59237 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 31 2.29923 1.88522 0.40914 2.48117 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 32 2.19905 0.47789 2.32913 1.76246 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 33 3.57937 0.09874 4.12901 2.99506 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 34 3.20230 3.07004 3.73745 0.11755 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 35 1.28285 1.55192 1.51253 1.23594 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 36 1.28473 1.54398 1.57730 1.19332 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03733 3.81109 4.23216 1.17742 0.36827 1.09861 0.40547 37 1.29020 1.44528 1.58437 1.25869 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 38 1.18181 2.89392 0.58545 2.51250 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.26877 1.50886 4.23216 3.75181 0.02376 1.09861 0.40547 39 0.48132 1.68144 2.54740 2.14012 104 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 40 2.00104 2.49719 0.42727 2.03865 105 G - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 41 2.73362 0.45317 1.78744 2.02480 106 C - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 42 2.82172 0.40505 2.54536 1.63420 107 C - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 43 2.49086 0.62193 2.10423 1.35359 108 C - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 44 1.77141 1.53379 0.87378 1.62548 109 g - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 45 1.64885 1.12800 2.05116 1.03434 110 u - - , 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 46 3.30518 4.25240 0.07580 3.81333 111 G - - , 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 47 0.11597 3.38356 3.27291 3.27884 130 A - - , 1.38629 1.38629 1.38629 1.38629 0.04250 3.60857 4.23216 0.86061 0.54974 1.09861 0.40547 48 3.57937 0.09874 4.12901 2.99506 132 C - - , 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 49 2.16632 0.86550 1.79672 1.20825 133 c - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 50 3.68010 0.16497 3.50530 2.33491 134 C - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 51 2.99572 3.84697 0.09866 3.78959 135 G - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 52 2.56203 3.30933 0.17453 3.06915 136 G - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 53 2.39649 3.54180 0.16527 3.43145 137 G - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 54 3.20230 3.07004 3.73745 0.11755 138 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 55 2.93176 2.85462 3.44181 0.15419 139 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 56 2.82384 0.20441 3.33205 2.41046 140 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 57 0.55410 2.53285 1.45772 2.17848 141 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 58 0.17156 3.08778 2.89516 2.86901 142 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 59 0.21897 2.92878 2.64527 2.62821 143 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 60 3.20230 3.07004 3.73745 0.11755 144 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 61 3.62946 0.19309 3.37313 2.16477 145 C - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 62 3.42510 0.19573 3.13852 2.28405 146 C - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 63 3.95214 0.11935 3.69538 2.68161 147 C - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 64 2.62982 3.65760 0.13928 3.43795 148 G - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 65 1.59446 1.93652 0.67090 1.95523 149 G - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 66 3.05200 0.34230 2.85050 1.68855 150 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 67 2.52848 0.56294 2.14132 1.45591 151 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 68 1.71240 1.24313 1.03993 1.72818 152 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 69 1.96632 2.12264 0.42673 2.43409 153 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 70 2.32670 3.36632 0.19320 3.13382 154 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 71 2.02877 3.06787 0.26716 2.87467 155 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 72 3.90222 0.12774 3.65533 2.60552 156 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02947 4.23216 4.23216 1.46634 0.26236 1.09861 0.40547 73 1.87410 3.27977 0.28210 2.90642 157 G - - : 1.38629 1.38629 1.38629 1.38629 0.32190 1.29016 * 1.12027 0.39481 0.00000 * // INFERNAL1/a [1.1.2 | July 2016] NAME arch-Cys ACC arch-Cys-r2-033017 STATES 236 NODES 63 CLEN 74 W 541 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 13:14:25 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Cys-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Cys-r2-033017.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Cys-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Cys-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Cys-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Cys-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Cys-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 239 EFFN 239.000000 CKSUM 4137479729 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9672 0.71906 ECMLC 0.61382 -7.70585 2.32911 1600000 567928 0.002113 ECMGC 0.26562 -37.51887 -21.07588 1600000 31539 0.012683 ECMLI 0.53618 -8.58764 2.78751 1600000 534544 0.002245 ECMGI 0.28328 -32.75675 -17.52346 1600000 29936 0.013362 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 541 1110 -12.838 -14.083 -0.001 -10.537 IL 1 1 2 1 4 17 40 543 1112 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 42 544 1113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 171 - U - - MR 3 2 3 5 5 22 48 542 1111 -12.889 -0.001 -12.705 -12.917 -13.808 -2.776 -3.137 0.095 1.418 D 4 2 3 5 5 15 37 539 1108 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 40 542 1111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 170 G C - - MP 6 5 3 10 6 23 48 541 1110 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -11.785 -8.404 -14.133 -5.883 -13.404 -9.565 -7.703 -13.576 -9.773 3.996 -9.965 -6.338 -8.070 -10.033 -10.153 -13.238 ML 7 5 3 10 6 16 39 538 1108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 39 538 1107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 35 532 1101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 40 540 1109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 40 540 1109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 169 C G - - MP 12 11 6 16 6 23 46 539 1108 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -10.859 -11.093 -10.188 -7.333 -8.550 -10.342 3.395 -9.459 -10.285 2.302 -10.411 -9.420 -0.949 -10.708 -6.252 -9.090 ML 13 11 6 16 6 16 38 536 1106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 38 536 1105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 35 531 1100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 39 538 1107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 40 538 1107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 168 C G - - MP 18 17 6 22 6 22 44 537 1106 -4.063 -13.785 -0.090 -12.561 -12.841 -13.236 -10.335 -9.558 -10.078 -0.717 -9.072 -10.842 3.853 -9.600 -9.944 -2.870 -10.312 -1.868 -0.981 -10.815 -6.739 -8.844 ML 19 17 6 22 6 16 38 534 1104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 38 534 1103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 34 529 1098 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 19 43 540 1109 -1.030 -1.033 -5.775 -9.512 -10.288 -9.948 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 43 538 1107 -0.620 -1.531 -10.803 -8.970 -10.076 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 164 G C - - MP 24 23 6 28 6 21 42 535 1104 -4.479 -13.785 -0.067 -12.561 -12.841 -13.236 -8.312 -6.929 -8.168 2.292 -9.320 -8.802 0.326 -8.788 -8.480 3.235 -8.771 -3.781 -1.677 -8.072 -6.412 -7.102 ML 25 23 6 28 6 16 38 532 1102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 37 532 1101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 34 528 1097 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 42 536 1105 -1.040 -1.043 -5.373 -9.110 -9.886 -9.547 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 41 534 1104 -1.394 -0.709 -9.598 -7.765 -8.871 0.000 0.000 0.000 0.000 [ MATP 6 ] 9 161 G C - - MP 30 29 6 34 6 19 40 533 1102 -3.521 -13.785 -0.132 -12.561 -12.841 -13.236 -9.583 -8.324 -9.421 2.093 -4.124 -10.036 1.109 -9.488 -9.442 3.241 -9.777 -5.890 -5.533 -9.590 -6.861 -8.277 ML 31 29 6 34 6 16 37 531 1100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 37 530 1099 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 34 527 1096 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 19 40 534 1103 -1.021 -1.023 -6.302 -10.040 -10.816 -10.476 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 39 532 1101 -6.299 -0.029 -9.811 -7.978 -9.084 0.000 0.000 0.000 0.000 [ MATP 7 ] 12 159 G C - - MP 36 35 6 40 6 17 38 531 1100 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -9.939 -8.065 -9.954 -1.921 -10.225 -9.516 0.379 -10.226 -9.408 3.800 -9.658 -4.208 -3.776 -9.394 -1.456 -8.867 ML 37 35 6 40 6 15 36 529 1098 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 36 529 1098 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 34 526 1096 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 37 530 1099 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 37 530 1099 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 13 158 G C - - MP 42 41 6 46 4 15 36 529 1098 -13.042 -4.191 -0.082 -11.664 -8.300 -6.870 -8.153 1.205 -9.292 -8.652 0.023 -8.806 -8.444 3.601 -8.708 -2.045 -1.987 -7.982 -6.369 -7.104 ML 43 41 6 46 4 14 35 528 1097 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 34 527 1096 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 33 526 1095 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 35 528 1097 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 34 527 1096 -4.620 -3.976 -0.159 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - U - - - ML 48 47 6 50 3 13 34 527 1096 -13.872 -0.000 -12.526 -9.270 -4.391 -10.143 1.982 D 49 47 6 50 3 12 33 526 1095 -11.221 -0.030 -5.613 IL 50 50 3 50 3 13 34 527 1096 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 15 - G - - - ML 51 50 3 53 2 12 33 526 1095 -14.606 -0.000 -0.489 -8.413 1.706 -5.518 D 52 50 3 53 2 11 32 525 1094 -8.445 -0.004 IL 53 53 3 53 2 13 33 526 1095 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 11 32 525 1094 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 2 186 389 -13.953 -0.000 -12.607 IL 56 56 2 56 3 1 3 188 391 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 113 - U - - - ML 57 56 2 59 3 1 3 186 389 -13.953 -0.085 -4.122 -1.245 0.253 -3.618 1.205 D 58 56 2 59 3 0 0 190 392 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 2 187 389 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 114 - u - - - ML 60 59 3 62 3 1 2 184 387 -1.616 -0.570 -12.522 -0.413 -0.239 -0.018 0.500 D 61 59 3 62 3 0 0 192 394 -0.537 -6.801 -1.729 IL 62 62 3 62 3 1 1 196 398 -0.131 -4.944 -4.198 0.000 0.000 0.000 0.000 [ MATL 47 ] 135 - u - - - ML 63 62 3 65 3 1 1 30 48 -2.502 -0.951 -1.708 0.149 -0.202 -3.148 0.933 D 64 62 3 65 3 0 0 27 46 -13.306 -8.819 -0.003 IL 65 65 3 65 3 1 3 30 48 -5.824 -0.030 -8.524 0.000 0.000 0.000 0.000 [ MATL 48 ] 137 - a - - - ML 66 65 3 68 3 1 2 29 47 -13.036 -0.001 -11.690 0.993 -1.299 -2.482 0.510 D 67 65 3 68 3 0 0 27 46 -14.289 -1.013 -0.987 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 138 - C - - - ML 69 68 3 71 5 1 1 28 46 -12.500 -0.001 -12.315 -12.528 -13.419 -3.441 1.620 -2.785 -0.539 D 70 68 3 71 5 0 0 26 45 -11.269 -0.996 -1.970 -2.055 -8.818 IL 71 71 3 71 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 139 156 g c - - MP 72 71 3 76 6 2 2 27 45 -13.668 -13.607 -0.050 -12.384 -12.664 -4.903 -8.323 -7.965 -8.270 -0.311 -2.795 0.180 2.369 -7.815 -8.175 2.614 -8.646 -5.560 1.342 -8.455 -4.636 -6.891 ML 73 71 3 76 6 1 1 25 43 -10.723 -11.069 -5.784 -0.033 -10.919 -8.449 -5.406 1.969 -5.890 -4.509 MR 74 71 3 76 6 1 1 25 44 -11.179 -9.908 -0.539 -9.886 -1.711 -8.099 -5.315 1.967 -5.807 -4.416 D 75 71 3 76 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 140 155 C G - - MP 78 77 6 82 6 2 2 25 43 -13.685 -13.624 -0.001 -12.401 -12.680 -13.075 -8.499 -7.943 -8.485 -1.210 -7.563 -9.394 3.191 -8.103 -8.354 2.017 -8.855 0.017 0.388 -8.736 -5.029 -7.104 ML 79 77 6 82 6 1 1 24 42 -10.723 -11.069 -0.039 -5.478 -10.919 -8.449 -4.813 -6.435 1.975 -5.550 MR 80 77 6 82 6 1 1 24 42 -9.577 -8.306 -4.214 -8.284 -0.109 -6.498 1.889 -3.625 -3.143 -3.294 D 81 77 6 82 6 0 0 23 41 -12.888 -11.586 -0.095 -8.065 -8.083 -4.158 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 141 154 G C - - MP 84 83 6 88 6 2 2 23 41 -6.362 -13.761 -0.018 -12.538 -12.818 -13.213 -10.659 -8.361 -11.039 -2.991 -11.333 -9.831 1.671 -11.064 -4.026 3.634 -9.932 -3.893 -7.038 -10.010 -2.981 -9.834 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 23 41 -9.577 -8.306 -0.172 -8.284 -3.418 -6.498 1.889 -3.625 -3.143 -3.294 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 22 41 -4.621 -4.884 -0.151 -6.539 -7.315 -6.975 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 143 153 G C - - MP 90 89 6 94 6 2 2 21 39 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -11.255 -8.404 -12.256 0.419 -12.684 -9.726 -3.307 -12.167 -9.737 3.847 -9.983 -6.243 -2.709 -10.097 -9.707 -11.033 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 144 152 G C - - MP 96 95 6 100 4 2 2 18 37 -13.042 -13.249 -0.001 -11.664 -11.785 -8.404 -14.133 -5.883 -13.404 -9.565 -7.703 -13.576 -9.773 3.996 -9.965 -6.338 -8.070 -10.033 -10.153 -13.238 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 145 - U - - - ML 102 101 6 104 3 1 1 16 34 -13.953 -0.000 -12.607 -11.034 -9.769 -12.460 1.999 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 146 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.953 -0.000 -12.607 -6.887 -4.050 -5.176 1.965 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 147 - C - - - ML 108 107 3 110 3 1 1 13 32 -13.953 -0.000 -12.607 -9.970 1.999 -10.585 -8.713 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 148 - G - - - ML 111 110 3 113 3 1 1 12 30 -13.953 -0.000 -12.607 0.568 -8.901 1.329 -8.712 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 149 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.953 -0.000 -12.607 1.998 -9.958 -9.194 -9.300 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 150 - A - - - ML 117 116 3 119 3 1 1 9 27 -13.953 -0.000 -12.607 1.126 -2.276 -1.846 0.414 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 151 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -11.034 -9.769 -12.460 1.999 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 13 498 1067 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 1 13 498 1067 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 5 49 93 -0.001 -11.963 -11.370 -12.010 [ MATP 15 ] 16 40 G C - - MP 127 126 1 131 6 2 6 49 93 -13.846 -13.785 -0.200 -2.953 -12.841 -13.236 -10.670 -4.670 -11.157 -0.274 -12.233 -10.079 2.094 -11.190 -9.682 3.438 -10.027 -6.090 -7.540 -10.254 -9.387 -9.854 ML 128 126 1 131 6 1 2 48 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 2 46 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 1 45 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 2 48 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 48 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 17 39 C G - - MP 133 132 6 137 6 2 6 47 91 -13.647 -13.586 -0.001 -12.362 -12.642 -13.037 -10.667 -10.947 -9.985 -7.184 -8.336 -10.130 3.891 -9.251 -10.089 -1.672 -10.209 -9.348 -1.713 -10.502 -0.921 -8.890 ML 134 132 6 137 6 1 3 48 92 -11.797 -12.143 -6.858 -0.901 -1.139 -9.523 -6.747 -6.115 -7.664 1.990 MR 135 132 6 137 6 1 2 44 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 1 44 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 46 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 46 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 18 38 c g - - MP 139 138 6 143 6 2 4 45 89 -13.647 -13.586 -0.199 -2.964 -12.642 -13.037 -9.204 1.190 -9.159 1.500 -8.926 -10.244 2.819 -9.048 -9.056 1.776 -9.530 -5.620 -1.475 -9.579 -6.409 -7.879 ML 140 138 6 143 6 1 2 48 93 -10.925 -11.271 -5.985 -0.029 -11.121 -8.650 -5.006 -6.656 1.978 -5.746 MR 141 138 6 143 6 1 2 37 80 -11.268 -9.997 -0.051 -9.975 -5.109 -8.189 1.978 -5.978 -5.384 -5.611 D 142 138 6 143 6 0 1 43 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 2 42 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 41 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 19 37 G A - - MP 145 144 6 149 4 2 3 34 74 -12.747 -12.955 -0.001 -11.369 -10.562 -10.783 -9.893 -7.024 -8.259 -10.052 -3.971 -9.166 3.653 -7.016 -10.117 -9.088 0.925 -10.417 0.512 -8.795 ML 146 144 6 149 4 1 2 47 92 -1.780 -9.548 -2.131 -1.061 -5.178 0.375 1.408 -5.472 MR 147 144 6 149 4 1 2 42 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 42 86 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 2 49 94 -0.600 -8.014 -1.574 -10.499 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 2 34 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - A - - - ML 151 150 6 153 3 1 1 32 58 -13.818 -0.074 -4.332 1.910 -9.036 -2.078 -8.750 D 152 150 6 153 3 0 0 31 57 -11.921 -0.019 -6.313 IL 153 153 3 153 3 1 1 33 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - G - - - ML 154 153 3 156 3 1 2 31 57 -13.887 -0.000 -12.541 -2.750 -3.676 1.811 -1.924 D 155 153 3 156 3 0 0 30 56 -10.953 -0.037 -5.345 IL 156 156 3 156 3 1 1 32 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - C - - - ML 157 156 3 159 3 1 1 30 56 -1.760 -0.505 -12.607 -0.670 1.168 -2.718 -0.040 D 158 156 3 159 3 0 0 25 51 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 31 57 -1.004 -0.998 -10.603 0.000 0.000 0.000 0.000 [ MATL 22 ] 28 - G - - - ML 160 159 3 162 3 1 1 23 44 -13.953 -0.000 -12.607 -4.317 -10.267 1.981 -9.247 D 161 159 3 162 3 0 0 22 43 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 29 - G - - - ML 163 162 3 165 3 1 1 22 43 -13.953 -0.000 -12.607 -8.494 -10.266 1.998 -9.253 D 164 162 3 165 3 0 0 21 42 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 30 - U - - - ML 166 165 3 168 3 1 1 21 42 -13.953 -0.933 -1.071 -5.246 0.686 -7.705 1.239 D 167 165 3 168 3 0 0 20 41 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 31 - C - - - ML 169 168 3 171 3 1 1 21 42 -1.406 -0.684 -11.675 0.625 1.163 -2.991 -3.429 D 170 168 3 171 3 0 0 10 31 -14.306 -1.884 -0.456 IL 171 171 3 171 3 1 1 21 42 -1.265 -0.779 -9.815 0.000 0.000 0.000 0.000 [ MATL 26 ] 35 - u - - - ML 172 171 3 174 3 1 1 9 28 -13.338 -0.000 -11.992 -0.566 0.548 -2.116 0.707 D 173 171 3 174 3 0 0 8 26 -13.852 -0.005 -8.244 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 36 - a - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 0.784 -0.287 -1.636 0.185 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 481 1051 -13.953 -0.000 -12.607 IL 180 180 2 180 3 1 1 483 1052 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 41 - G - - - ML 181 180 2 183 5 1 1 481 1051 -12.889 -0.001 -12.705 -12.917 -13.808 -0.387 -3.484 1.610 -3.412 D 182 180 2 183 5 0 0 478 1047 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 481 1050 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 42 112 g u - - MP 184 183 3 188 6 2 2 480 1050 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -8.092 -7.094 -7.986 1.056 -1.932 -8.685 0.795 -8.083 -8.154 1.811 -8.530 2.457 1.513 -7.977 -5.146 -6.783 ML 185 183 3 188 6 1 1 478 1047 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 477 1046 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 471 1040 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 479 1048 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 479 1048 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 43 111 C G - - MP 190 189 6 194 6 2 2 478 1048 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -8.287 -7.993 -8.273 -1.633 -7.125 -9.096 3.471 -7.786 -8.136 0.402 -8.641 -2.002 1.516 -8.465 -3.088 -6.858 ML 191 189 6 194 6 1 1 476 1045 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 475 1044 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 470 1039 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 477 1046 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 477 1046 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 44 110 G C - - MP 196 195 6 200 6 2 2 476 1046 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -10.594 -9.096 -10.381 -1.977 -9.278 -10.039 1.231 -9.945 -9.877 3.552 -10.107 -6.886 0.718 -10.210 -6.910 -9.242 ML 197 195 6 200 6 1 1 474 1043 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 473 1042 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 468 1037 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 475 1044 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 475 1044 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 45 109 G C - - MP 202 201 6 206 6 2 2 474 1044 -13.846 -13.785 -0.001 -12.561 -12.841 -13.236 -11.785 -8.404 -14.133 -5.883 -13.404 -9.565 -7.703 -13.576 -9.773 3.996 -9.965 -6.338 -8.070 -10.033 -10.153 -13.238 ML 203 201 6 206 6 1 1 472 1041 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 470 1040 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 467 1036 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 473 1042 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 473 1042 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 46 108 a u - - MP 208 207 6 212 4 2 2 472 1042 -4.165 -13.249 -0.083 -11.664 -9.338 -8.171 -9.115 2.873 -8.995 -9.749 1.634 -9.226 -9.311 2.174 -9.604 -5.766 -5.158 -0.179 -3.163 -8.006 ML 209 207 6 212 4 1 1 471 1040 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 468 1037 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 466 1035 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 474 1043 -0.428 -8.447 -1.982 -10.932 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 471 1040 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 51 - C - - - ML 214 213 6 216 3 1 1 470 1039 -13.953 -0.000 -12.607 -9.024 1.982 -9.420 -4.455 D 215 213 6 216 3 0 0 464 1033 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 470 1039 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 52 - U - - - ML 217 216 3 219 3 1 1 469 1038 -13.953 -0.000 -12.607 -3.523 -2.682 -7.518 1.908 D 218 216 3 219 3 0 0 460 1029 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 469 1038 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 53 - c - - - ML 220 219 3 222 3 1 1 468 1037 -13.953 -0.000 -12.607 -0.092 0.186 -0.120 0.006 D 221 219 3 222 3 0 0 456 1025 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 468 1037 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 54 - g - - - ML 223 222 3 225 3 1 1 467 1036 -13.953 -0.000 -12.607 -0.067 -0.093 0.205 -0.066 D 224 222 3 225 3 0 0 448 1017 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 466 1035 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 55 - u - - - ML 226 225 3 228 3 1 1 466 1035 -13.953 -0.000 -12.607 -0.067 -0.093 -0.095 0.228 D 227 225 3 228 3 0 0 433 1002 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 464 1033 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 56 - G - - - ML 229 228 3 231 3 1 1 465 1034 -1.644 -0.557 -12.607 -2.170 -5.566 1.901 -5.437 D 230 228 3 231 3 0 0 367 936 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 499 1069 -0.047 -4.974 -14.694 0.000 0.000 0.000 0.000 [ MATL 42 ] 107 - A - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 1.963 -3.362 -8.939 -8.826 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME arch-Cys ACC arch-Cys-r2-033017 LENG 74 MAXL 537 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 13:14:25 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Cys-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Cys-r2-033017.sto NSEQ 239 EFFN 10.236710 CKSUM 4137479729 STATS LOCAL MSV -8.0847 0.71906 STATS LOCAL VITERBI -9.5093 0.71906 STATS LOCAL FORWARD -3.1757 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.70771 1.26113 1.14562 1.52622 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 0.00000 * 1 3.84112 4.90842 0.03694 4.90510 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 2 3.34781 0.54505 1.28639 2.21860 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 3 2.67088 0.30899 2.60484 2.09797 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.06898 2.83326 4.84929 0.78707 0.60729 1.09861 0.40547 4 1.34942 2.35850 0.55734 2.61300 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05537 3.07845 4.84929 0.81345 0.58578 1.09861 0.40547 5 1.43847 2.04066 0.57663 2.64537 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.09420 2.50025 4.84929 0.76032 0.63021 1.09861 0.40547 6 2.29304 2.35047 0.31360 2.61857 12 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 7 1.74976 2.49083 0.39086 2.70502 13 G - - ( 1.38629 1.38629 1.38629 1.38629 0.06317 4.84929 2.93033 1.46634 0.26236 1.09861 0.40547 8 3.90920 3.42087 4.43192 0.06682 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.01655 4.80267 4.80267 1.46634 0.26236 0.25737 1.48318 9 1.76600 3.85295 0.25380 3.44442 15 G - - , 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 10 2.16500 1.61685 0.46358 2.85251 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 11 3.68548 0.24251 3.26178 1.88425 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.06898 4.84929 2.83326 1.46634 0.26236 1.09861 0.40547 12 1.41007 1.14396 1.23277 1.92527 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.01665 4.79695 4.79695 1.46634 0.26236 0.23615 1.55903 13 3.39392 2.31335 0.44549 1.48288 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.14626 2.93033 2.49264 1.13935 0.38570 1.09861 0.40547 14 0.10635 4.09600 2.72905 3.96507 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05927 4.77148 3.01436 1.46634 0.26236 0.17351 1.83701 15 2.47865 3.14326 0.23435 2.50204 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01641 4.81099 4.81099 1.46634 0.26236 0.29646 1.36043 16 1.68870 0.75008 2.61349 1.31069 25 c - - _ 1.38629 1.38629 1.38629 1.38629 0.30369 1.37013 4.84929 0.71476 0.67199 1.09861 0.40547 17 3.80841 5.22371 0.03719 4.71788 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 18 4.37384 5.44324 0.02482 4.88176 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 19 2.93072 1.00301 3.60981 0.59274 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.53220 4.84929 0.90423 1.46634 0.26236 1.09861 0.40547 20 1.06894 0.90224 2.39840 1.83193 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.35576 1.25047 4.34341 0.58130 0.81909 1.29334 0.32069 21 1.53124 1.18143 2.23480 0.99458 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02230 4.50752 4.50752 1.46634 0.26236 0.05136 2.99454 22 0.96727 1.59801 2.09309 1.22324 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.18598 4.84929 1.82090 1.46634 0.26236 1.09861 0.40547 23 0.23973 4.08488 1.75242 3.77300 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.01869 4.68200 4.68200 1.46634 0.26236 0.54564 0.86623 24 2.01530 1.16862 1.05733 1.56762 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.07347 4.78848 2.77246 1.46634 0.26236 2.35431 0.09978 25 2.75644 3.40361 0.12826 3.74638 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01776 4.73277 4.73277 1.46634 0.26236 0.12486 2.14237 26 3.09777 0.50308 1.56542 1.95770 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 27 1.64318 3.02723 0.36328 2.76784 41 G - - , 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 28 1.82305 1.70161 0.82367 1.52666 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 29 2.56639 0.62814 1.95555 1.39385 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 30 2.33655 1.92307 0.45984 2.07306 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 31 3.83488 4.89737 0.03728 4.88962 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 32 1.12540 1.74822 0.97371 2.08978 46 g - - < 1.38629 1.38629 1.38629 1.38629 0.06403 2.91520 4.84929 1.39394 0.28515 1.09861 0.40547 33 4.57863 0.04410 4.95776 3.65576 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 34 3.05570 2.78747 3.85616 0.13905 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 35 1.33641 1.39221 1.55523 1.28177 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 36 1.32490 1.52771 1.39459 1.31229 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 37 1.32399 1.52025 1.54181 1.19972 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 38 2.68942 4.02507 0.11664 3.71683 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.33194 1.29231 4.84929 3.44433 0.03245 1.09861 0.40547 39 0.06479 3.57370 4.07338 4.03647 107 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 40 2.60327 0.97906 1.63797 1.03302 108 c - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 41 4.95815 0.04642 4.79957 3.50334 109 C - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 42 2.21210 0.49890 1.83733 2.08676 110 C - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 43 1.53980 2.13364 0.57364 2.26627 111 G - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 44 1.62534 1.37305 1.61332 1.04812 112 u - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 45 1.90595 1.27772 2.77859 0.67232 113 U - - , 1.38629 1.38629 1.38629 1.38629 0.02999 4.84929 3.82988 1.46634 0.26236 1.09861 0.40547 46 1.43690 1.57930 1.51213 1.09131 114 u - - , 1.38629 1.38629 1.38629 1.38629 0.37165 1.19582 4.83531 2.37666 0.09746 1.56267 0.23519 47 1.28643 1.52538 2.37697 0.88340 135 u - - , 1.38629 1.38629 1.38629 1.38629 0.72065 2.10546 0.93707 0.12571 2.13598 1.56267 0.23519 48 0.90412 1.88079 2.15939 1.11707 137 a - - , 1.38629 1.38629 1.38629 1.38629 0.02612 4.35108 4.35108 1.46634 0.26236 0.71968 0.66730 49 2.52924 0.42044 2.90837 1.56563 138 C - - , 1.38629 1.38629 1.38629 1.38629 0.01972 4.62899 4.62899 1.46634 0.26236 0.33785 1.24931 50 2.05791 1.09113 1.18361 1.46850 139 c - - < 1.38629 1.38629 1.38629 1.38629 0.04378 4.80035 3.36377 1.46634 0.26236 0.53552 0.88036 51 2.33647 0.85860 1.23295 1.67055 140 c - - < 1.38629 1.38629 1.38629 1.38629 0.01644 4.80951 4.80951 1.46634 0.26236 0.64008 0.74919 52 2.30022 1.81081 0.40832 2.63843 141 G - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.00455 4.83531 0.72046 0.66656 0.54327 0.86952 53 2.30149 3.65335 0.17102 3.46794 143 G - - < 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 54 3.78043 4.80300 0.04039 4.76002 144 G - - < 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 55 4.41716 4.14797 4.97528 0.03539 145 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 56 3.44915 3.13337 3.77589 0.10343 146 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 57 4.77758 0.03053 5.15287 4.14323 147 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 58 1.01423 3.82297 0.53418 3.52996 148 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 59 0.02322 5.08699 4.69597 4.87399 149 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 60 0.76740 2.23530 2.17554 1.15431 150 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 61 4.41716 4.14797 4.97528 0.03539 151 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 62 4.74458 0.05066 4.67231 3.46251 152 C - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 63 3.60630 0.19173 3.49273 2.14645 153 C - - > 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 64 2.83449 0.45966 1.71935 2.03582 154 C - - > 1.38629 1.38629 1.38629 1.38629 0.09626 4.84929 2.47767 1.46634 0.26236 1.09861 0.40547 65 1.79866 1.47399 0.78335 1.90652 155 g - - > 1.38629 1.38629 1.38629 1.38629 0.01710 4.77013 4.77013 1.46634 0.26236 1.10617 0.40171 66 1.60993 1.09824 1.16296 1.87028 156 c - - > 1.38629 1.38629 1.38629 1.38629 0.06668 2.87800 4.79695 0.27142 1.43673 0.23615 1.55903 67 2.93548 0.44491 2.36706 1.54995 158 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 68 3.04189 0.35204 2.13712 2.03248 159 C - - ) 1.38629 1.38629 1.38629 1.38629 0.09420 2.50025 4.84929 0.18107 1.79803 1.09861 0.40547 69 2.87539 0.63071 1.95787 1.30846 161 C - - ) 1.38629 1.38629 1.38629 1.38629 0.05537 3.07845 4.84929 0.66824 0.71870 1.09861 0.40547 70 2.84277 0.61266 2.24156 1.22576 164 C - - ) 1.38629 1.38629 1.38629 1.38629 0.06898 2.83326 4.84929 1.13544 0.38755 1.09861 0.40547 71 2.29610 2.95045 0.28261 2.37282 168 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 72 2.41955 1.31439 0.51532 3.09914 169 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 73 5.03106 0.04517 4.84048 3.51573 170 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01579 4.84929 4.84929 1.46634 0.26236 1.09861 0.40547 74 2.22707 2.52837 1.52837 0.51839 171 U - - : 1.38629 1.38629 1.38629 1.38629 0.40982 1.08996 * 1.10764 0.40098 0.00000 * // INFERNAL1/a [1.1.2 | July 2016] NAME arch-Gln ACC arch-Gln-r2-033017 STATES 233 NODES 62 CLEN 73 W 601 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 13:45:44 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Gln-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Gln-r2-033017.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gln-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gln-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gln-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gln-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Gln-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 352 EFFN 352.000000 CKSUM 3694808156 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.6292 0.71888 ECMLC 0.63340 -8.13656 1.77570 1600000 639527 0.001876 ECMGC 0.35132 -48.53313 -35.47054 1600000 39366 0.010161 ECMLI 0.56895 -9.15221 1.77397 1600000 601117 0.001996 ECMGI 0.35348 -45.85566 -32.92013 1600000 38711 0.010333 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 601 1245 -13.393 -14.638 -0.001 -11.092 IL 1 1 2 1 4 16 41 603 1248 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 42 603 1248 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 146 - A - - MR 3 2 3 5 5 23 51 602 1247 -13.443 -0.000 -13.259 -13.471 -14.362 1.847 -9.517 -1.326 -9.349 D 4 2 3 5 5 12 37 599 1244 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 16 41 602 1247 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 145 A U - - MP 6 5 3 10 6 23 50 601 1246 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -1.616 -9.081 -10.613 3.966 -12.696 -13.873 -8.164 -10.652 -10.174 -5.742 -10.843 -6.368 -8.116 -11.915 -10.000 -9.212 ML 7 5 3 10 6 14 39 598 1243 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 39 598 1243 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 36 592 1237 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 40 600 1245 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 40 600 1245 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 144 G C - - MP 12 11 6 16 6 21 48 599 1244 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -12.316 -8.961 -14.483 -6.437 -13.589 -10.115 -1.400 -13.900 -10.322 3.963 -10.513 -6.895 -8.530 -10.583 -10.507 -13.560 ML 13 11 6 16 6 14 39 596 1241 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 39 596 1241 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 36 591 1236 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 40 598 1243 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 40 598 1243 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 143 C G - - MP 18 17 6 22 6 19 46 597 1242 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -11.425 -11.700 -10.744 -7.936 -9.096 -10.890 3.495 -10.011 -10.847 -2.117 -10.968 -10.091 2.162 -11.261 -6.799 -9.649 ML 19 17 6 22 6 13 38 594 1239 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 38 594 1239 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 36 589 1234 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 39 596 1241 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 40 596 1241 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 142 C G - - MP 24 23 6 28 6 17 44 595 1240 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -11.425 -11.696 -10.745 -7.934 -9.098 -10.891 3.933 -10.011 -10.847 -2.117 -10.968 -10.082 -1.085 -11.262 -6.800 -9.649 ML 25 23 6 28 6 13 38 593 1238 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 38 592 1237 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 35 588 1233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 14 39 594 1239 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 39 594 1239 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 141 C G - - MP 30 29 6 34 6 15 43 593 1238 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -11.417 -11.658 -10.744 -7.897 -9.105 -10.898 3.712 -10.014 -10.842 1.454 -10.967 -9.993 -2.917 -11.265 -6.807 -9.647 ML 31 29 6 34 6 12 38 591 1236 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 38 590 1235 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 35 587 1232 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 39 592 1237 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 39 592 1237 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 140 c g - - MP 36 35 6 40 6 13 41 591 1236 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -10.694 -10.286 -10.345 -0.391 -9.042 -10.790 2.833 -9.789 -10.329 2.772 -10.617 -7.976 0.331 -10.767 -6.674 -9.132 ML 37 35 6 40 6 11 37 589 1234 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 37 589 1234 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 35 586 1231 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 38 590 1235 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 38 590 1235 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 139 G C - - MP 42 41 6 46 4 11 39 589 1234 -13.598 -13.805 -0.001 -12.219 -11.725 -8.960 -12.688 -0.158 -13.594 -10.360 -8.198 -12.610 -10.284 3.829 -10.555 -2.610 -0.469 -10.721 -10.505 -11.396 ML 43 41 6 46 4 10 37 588 1233 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 36 587 1232 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 35 586 1231 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 37 589 1234 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 37 588 1233 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 9 37 587 1232 -14.508 -0.000 -13.162 -11.683 -10.366 -13.175 2.000 D 49 47 6 50 3 8 35 585 1230 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 37 588 1232 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - g - - - ML 51 50 3 53 2 8 36 586 1231 -15.162 -0.000 -0.014 0.114 0.906 -4.235 D 52 50 3 53 2 7 35 585 1230 -8.445 -0.004 IL 53 53 3 53 2 9 36 586 1231 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 7 35 585 1230 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 1 30 49 -14.508 -0.000 -13.162 IL 56 56 2 56 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 99 - c - - - ML 57 56 2 59 3 1 1 30 49 -14.508 -0.082 -4.181 -0.203 0.430 -0.834 0.291 D 58 56 2 59 3 0 0 32 51 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 100 - G - - - ML 60 59 3 62 3 1 1 29 48 -14.427 -0.000 -13.081 -8.863 -4.944 1.970 -4.416 D 61 59 3 62 3 0 0 29 47 -11.773 -0.021 -6.164 IL 62 62 3 62 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 119 - A - - - ML 63 62 3 65 3 1 1 28 47 -3.878 -0.102 -13.162 1.961 -10.181 -3.244 -9.682 D 64 62 3 65 3 0 0 27 45 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 28 47 -5.417 -0.039 -8.117 0.000 0.000 0.000 0.000 [ MATL 48 ] 121 - C - - - ML 66 65 3 68 5 1 1 27 46 -13.443 -0.000 -13.259 -13.471 -14.362 -9.650 1.980 -10.058 -4.261 D 67 65 3 68 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 122 138 c g - - MP 69 68 3 73 6 2 2 26 45 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -8.729 -7.600 -8.592 1.557 -8.691 -9.258 2.895 -8.845 -8.836 2.327 -9.171 -2.151 -1.824 -8.554 -3.883 -7.444 ML 70 68 3 73 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 123 137 G C - - MP 75 74 6 79 6 2 2 24 43 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -9.534 -8.418 -9.279 -0.598 -9.059 -9.793 1.919 -9.418 -9.575 3.402 -9.821 -6.082 -2.070 -9.287 -2.030 -1.067 ML 76 74 6 79 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 124 136 C G - - MP 81 80 6 85 6 2 2 22 41 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -8.676 -8.319 -8.670 0.439 -3.514 -3.578 3.070 -3.545 -8.551 2.018 -9.056 -0.159 -0.381 -8.836 -1.967 -7.266 ML 82 80 6 85 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 125 135 G C - - MP 87 86 6 91 6 2 2 20 39 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -3.557 -3.537 -3.558 1.693 -12.685 -13.054 -8.079 -10.686 -10.158 3.642 -10.796 -6.358 -8.048 -11.695 -9.945 -9.237 ML 88 86 6 91 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 126 134 G C - - MP 93 92 6 97 4 2 2 18 37 -13.598 -13.805 -0.001 -12.219 -12.321 -8.948 -14.636 -6.424 -13.954 -10.112 -8.250 -14.096 -3.579 3.974 -3.581 -3.452 -8.615 -10.579 -10.701 -13.722 ML 94 92 6 97 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 127 - U - - - ML 99 98 6 101 3 1 1 15 34 -14.508 -0.000 -13.162 -11.683 -10.366 -13.175 2.000 D 100 98 6 101 3 0 0 19 37 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 128 - U - - - ML 102 101 3 104 3 1 1 14 33 -14.508 -0.000 -13.162 -11.683 -10.366 -13.175 2.000 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 129 - C - - - ML 105 104 3 107 3 1 1 13 31 -14.508 -0.000 -13.162 -10.686 1.999 -11.361 -9.334 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 130 - G - - - ML 108 107 3 110 3 1 1 12 30 -14.508 -0.000 -13.162 -2.548 -10.778 1.936 -9.772 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 131 - A - - - ML 111 110 3 113 3 1 1 10 29 -14.508 -0.000 -13.162 1.999 -10.488 -9.724 -9.826 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 132 - A - - - ML 114 113 3 116 3 1 1 9 27 -14.508 -0.000 -13.162 1.900 -2.372 -3.824 -7.933 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 133 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -11.683 -10.366 -13.175 2.000 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 0 16 564 1209 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 176 0 16 564 1209 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 1 29 46 -0.001 -12.512 -11.919 -12.559 [ MATP 15 ] 10 28 G U - - MP 124 123 1 128 6 2 3 29 46 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -10.417 -9.077 -10.612 -2.775 -12.752 -13.908 -8.210 -10.655 -10.172 -0.917 -10.842 3.925 -8.136 -11.917 -10.041 -3.034 ML 125 123 1 128 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 U A - - MP 130 129 6 134 6 2 3 27 44 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -10.517 -9.244 -10.630 -2.662 -11.420 -12.948 -7.039 -10.554 -10.245 1.593 -10.858 -6.550 3.544 0.186 -8.966 -9.263 ML 131 129 6 134 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 G C - - MP 136 135 6 140 6 2 3 25 42 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -11.333 -10.848 -10.811 -7.303 -9.315 -10.948 2.018 0.185 -10.736 3.430 -10.926 -8.712 -6.018 -11.260 -7.011 -9.681 ML 137 135 6 140 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 u u - - MP 142 141 6 146 4 2 2 23 40 -13.598 -13.805 -0.001 -12.219 -11.418 -11.664 -10.744 -7.903 -9.103 -10.897 -4.816 -10.014 -10.843 -7.887 -10.968 -10.007 0.577 -11.265 2.753 2.948 ML 143 141 6 146 4 1 1 26 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 148 147 6 150 3 1 2 21 38 -14.508 -0.000 -13.162 1.999 -10.488 -9.724 -9.826 D 149 147 6 150 3 0 0 21 39 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 151 150 3 153 3 1 1 20 37 -14.508 -0.000 -13.162 -3.873 -10.813 1.975 -9.792 D 152 150 3 153 3 0 0 20 38 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - - - ML 154 153 3 156 3 1 1 19 36 -4.615 -0.060 -13.162 -3.026 0.956 -5.736 0.940 D 155 153 3 156 3 0 0 18 36 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 21 38 -1.576 -0.598 -7.973 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - G - - - ML 157 156 3 159 3 1 1 14 33 -14.508 -0.000 -13.162 -9.041 -10.809 1.999 -9.797 D 158 156 3 159 3 0 0 17 36 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 160 159 3 162 3 1 1 13 31 -14.508 -0.000 -13.162 -9.041 -10.809 1.999 -9.797 D 161 159 3 162 3 0 0 16 35 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - C - - - ML 163 162 3 165 3 1 1 12 30 -14.508 -0.224 -2.797 -3.254 1.271 -7.845 0.563 D 164 162 3 165 3 0 0 15 34 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - C - - - ML 166 165 3 168 3 1 1 10 29 -14.284 -0.000 -12.938 -10.397 1.999 -11.047 -9.084 D 167 165 3 168 3 0 0 10 28 -13.140 -0.236 -2.730 IL 168 168 3 168 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - - - ML 169 168 3 171 3 1 1 9 27 -14.477 -0.000 -13.132 1.812 -1.430 -7.787 -3.159 D 170 168 3 171 3 0 0 10 29 -10.435 -0.053 -4.827 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.969 -3.624 -9.584 -9.521 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 176 122 1 177 3 0 0 547 1192 -14.508 -0.000 -13.162 IL 177 177 2 177 3 1 1 548 1193 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - G - - - ML 178 177 2 180 5 1 1 547 1192 -13.443 -0.000 -13.259 -13.471 -14.362 -0.863 -0.384 1.026 -0.628 D 179 177 2 180 5 0 0 544 1189 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 547 1192 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 98 C G - - MP 181 180 3 185 6 2 2 546 1191 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -8.672 -3.400 -5.382 0.129 -3.097 -9.519 3.370 -8.205 -8.536 0.045 -9.051 0.335 0.676 -8.857 -1.385 -4.556 ML 182 180 3 185 6 1 1 543 1188 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 542 1187 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 537 1182 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 545 1190 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 545 1190 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 97 g c - - MP 187 186 6 191 6 2 2 544 1189 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -8.255 -2.892 -2.066 0.617 -4.125 -8.770 1.772 -8.636 -8.469 2.909 -8.781 -0.111 0.198 -4.620 -0.037 -7.083 ML 188 186 6 191 6 1 1 541 1186 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 540 1185 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 535 1180 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 543 1188 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 543 1188 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 96 G C - - MP 193 192 6 197 6 2 2 542 1187 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -11.404 -3.234 -12.055 1.519 -13.325 -10.538 -8.106 -12.066 -10.253 3.636 -10.575 -6.680 -0.788 -10.796 -10.321 -10.738 ML 194 192 6 197 6 1 1 539 1184 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 538 1183 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 534 1179 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 541 1186 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 541 1186 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 95 G C - - MP 199 198 6 203 6 2 2 540 1185 -14.390 -14.330 -0.001 -13.106 -13.386 -13.781 -12.256 -8.999 -13.939 -6.456 -12.857 -10.142 0.464 -13.342 -10.335 3.867 -10.527 -6.931 -8.304 -10.605 -10.053 -12.933 ML 200 198 6 203 6 1 1 538 1183 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 536 1181 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 532 1177 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 539 1184 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 539 1184 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 94 g c - - MP 205 204 6 209 4 2 2 538 1183 -13.598 -13.805 -0.001 -12.219 -10.353 -9.277 -10.149 2.236 -9.712 -10.883 2.214 -10.025 -10.169 2.666 -10.518 -6.809 -1.855 -10.510 -7.291 -8.978 ML 206 204 6 209 4 1 1 536 1181 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 533 1178 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 531 1176 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 538 1182 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 537 1182 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - C - - - ML 211 210 6 213 3 1 1 536 1181 -14.508 -0.000 -13.162 -10.091 1.758 -10.706 -0.699 D 212 210 6 213 3 0 0 529 1174 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 536 1181 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - - - ML 214 213 3 216 3 1 1 535 1180 -14.508 -0.000 -13.162 -1.805 -3.815 -8.069 1.864 D 215 213 3 216 3 0 0 525 1170 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 535 1180 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - g - - - ML 217 216 3 219 3 1 1 534 1179 -14.508 -0.000 -13.162 -0.128 -0.020 0.241 -0.126 D 218 216 3 219 3 0 0 520 1165 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 533 1178 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - a - - - ML 220 219 3 222 3 1 1 533 1178 -14.508 -0.000 -13.162 0.256 -0.146 -0.147 -0.001 D 221 219 3 222 3 0 0 511 1156 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 532 1177 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - a - - - ML 223 222 3 225 3 1 1 532 1177 -14.508 -0.000 -13.162 0.256 -0.146 -0.020 -0.126 D 224 222 3 225 3 0 0 494 1139 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 530 1175 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - G - - - ML 226 225 3 228 3 1 1 531 1176 -1.471 -0.646 -13.162 -1.646 -10.703 1.879 -9.733 D 227 225 3 228 3 0 0 416 1061 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 566 1211 -0.041 -5.151 -15.592 0.000 0.000 0.000 0.000 [ MATL 42 ] 93 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.623 -0.773 -1.726 -4.968 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME arch-Gln ACC arch-Gln-r2-033017 LENG 73 MAXL 586 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 13:45:45 2017 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.7/cm/arch-Gln-r2-033017.cm /projects/lowelab/users/blin/tRNAscan/models/1.7/alignments/arch-Gln-r2-033017.sto NSEQ 352 EFFN 5.137451 CKSUM 3694808156 STATS LOCAL MSV -7.9957 0.71888 STATS LOCAL VITERBI -9.1366 0.71888 STATS LOCAL FORWARD -3.3658 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54820 1.34332 1.20503 1.48408 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 0.00000 * 1 0.07214 4.38291 3.16728 4.20028 1 A - - ( 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 2 3.00606 3.38426 0.11471 3.68931 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 3 2.99762 0.55087 2.63631 1.19725 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 4 3.68633 0.17549 3.28631 2.31768 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 5 2.86813 0.46624 1.73990 1.96395 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 6 2.07480 1.10738 1.04974 1.64008 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 7 2.15987 3.09077 0.26232 2.66029 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 8 3.55732 3.37461 4.09920 0.08266 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 9 1.29466 1.56919 1.01268 1.86724 9 g - - , 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 10 2.33030 3.89801 0.16271 3.42308 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 11 2.10449 1.71212 1.45762 0.76611 11 u - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 12 2.14703 1.39531 0.67387 2.07401 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 13 3.20706 1.97884 3.05515 0.25595 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 14 0.05530 4.21862 3.86369 4.01265 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 15 3.21033 4.37015 0.07509 3.94513 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 16 2.10561 0.93568 2.77498 0.85906 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05588 3.16599 4.40830 0.71979 0.66719 1.09861 0.40547 17 3.63635 4.61495 0.05340 4.15093 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 18 3.63635 4.61495 0.05340 4.15093 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 19 2.19553 0.72345 2.91383 1.05166 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.13945 4.40830 2.13716 1.46634 0.26236 1.09861 0.40547 20 3.76104 0.08297 4.29268 3.15372 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02761 4.29645 4.29645 1.46634 0.26236 0.32849 1.27301 21 0.28746 2.28053 2.87046 2.39768 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39267 4.39267 1.46634 0.26236 0.63118 0.75921 22 0.10298 3.37918 3.45024 3.44085 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 23 1.91782 3.21780 0.81605 0.99195 25 g - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 24 2.32045 0.73410 1.41175 1.72533 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 25 0.91199 1.45754 1.53761 1.89330 27 a - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 26 3.75256 2.30741 3.64347 0.16151 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 27 1.51408 1.70812 0.98729 1.48634 29 g - - , 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 28 1.98511 0.86855 1.65898 1.37539 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 29 1.71820 1.56318 0.90231 1.58225 31 g - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 30 1.66511 2.80457 0.40489 2.48590 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 31 2.68103 2.54561 0.21089 3.14145 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 32 1.47714 1.48613 0.89860 1.97814 34 g - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 33 2.93643 0.29902 3.57148 1.72997 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 34 2.28099 2.57086 3.16307 0.24968 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 35 1.30931 1.52900 1.43300 1.29226 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 36 1.20019 1.56496 1.58450 1.25626 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 37 1.19950 1.56986 1.53603 1.28972 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 38 2.37662 3.80735 0.15925 3.43744 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.34224 1.28140 4.40830 3.55381 0.02903 1.09861 0.40547 39 0.45272 1.96106 2.17800 2.20611 93 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 40 2.20877 0.98170 1.38492 1.32748 94 c - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 41 3.38025 0.23773 2.45178 2.39245 95 C - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 42 2.69811 0.45457 2.61647 1.49216 96 C - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 43 1.87306 1.01971 1.34408 1.49224 97 c - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 44 1.59036 1.93757 0.76901 1.66800 98 g - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 45 1.35035 1.31821 1.82879 1.16273 99 u - - , 1.38629 1.38629 1.38629 1.38629 0.06703 4.40830 2.94388 1.46634 0.26236 1.09861 0.40547 46 3.12823 3.80236 0.10417 3.41693 100 G - - , 1.38629 1.38629 1.38629 1.38629 0.02571 4.36697 4.36697 1.46634 0.26236 0.38010 1.15137 47 0.10239 3.76754 3.07279 3.57819 119 A - - , 1.38629 1.38629 1.38629 1.38629 0.07731 2.77711 4.40830 0.35391 1.21044 1.09861 0.40547 48 3.79756 0.08745 4.31485 3.03787 121 C - - , 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 49 1.71347 1.13057 1.13107 1.74742 122 c - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 50 1.91715 1.65247 0.65519 1.95156 123 G - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 51 1.89204 1.02526 1.31274 1.50755 124 c - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 52 1.52713 2.63420 0.46595 2.48259 125 G - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 53 2.91443 3.75637 0.10930 3.65213 126 G - - < 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 54 3.55732 3.37461 4.09920 0.08266 127 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 55 3.55732 3.37461 4.09920 0.08266 128 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 56 3.97694 0.06741 4.48107 3.34899 129 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 57 2.78682 4.08824 0.10894 3.69582 130 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 58 0.05530 4.21862 3.86369 4.01265 131 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 59 0.19497 2.74568 2.85342 2.89513 132 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 60 3.55732 3.37461 4.09920 0.08266 133 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 61 3.74517 0.13762 3.51963 2.58586 134 C - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 62 2.71735 0.52888 2.42069 1.36327 135 C - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 63 1.72829 1.47761 0.92854 1.61395 136 g - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 64 2.29464 0.72516 1.51980 1.62862 137 c - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 65 1.97620 1.23830 1.03867 1.52508 138 g - - > 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 66 2.83306 0.30527 2.90847 1.89925 139 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 67 1.83658 1.12604 1.02026 1.85905 140 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 68 2.21153 1.81361 0.42382 2.61924 141 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 69 2.55174 3.41614 0.15375 3.45064 142 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 70 1.30756 2.78744 0.50341 2.75712 143 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 71 3.89807 0.13335 3.27746 2.70549 144 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 72 4.10205 3.53899 4.22971 0.06202 145 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02465 4.40830 4.40830 1.46634 0.26236 1.09861 0.40547 73 0.20822 3.35134 2.21903 3.11856 146 A - - : 1.38629 1.38629 1.38629 1.38629 0.49155 0.94592 * 1.11098 0.39934 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Glu ACC arch-Glu-r2-033017 STATES 239 NODES 64 CLEN 75 W 703 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:31:33 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Glu-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Glu-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Glu-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Glu-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Glu-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Glu-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Glu-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 339 EFFN 339.000000 CKSUM 1903879216 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.7118 0.71892 ECMLC 0.52671 -10.62849 1.56654 1600000 739174 0.001623 ECMGC 0.34179 -54.00445 -40.78919 1600000 36619 0.010923 ECMLI 0.52500 -10.40321 1.77188 1600000 716392 0.001675 ECMGI 0.36996 -49.52583 -37.39293 1600000 35603 0.011235 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 703 1478 -13.339 -14.584 -0.001 -11.038 IL 1 1 2 1 4 19 44 705 1480 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 45 706 1481 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 137 - A - - MR 3 2 3 5 5 25 52 705 1480 -2.233 -0.346 -13.205 -13.417 -14.308 1.999 -10.436 -9.672 -9.775 D 4 2 3 5 5 16 40 701 1476 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 24 51 706 1481 -0.592 -1.574 -13.065 -11.233 -12.339 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 133 G C - - MP 6 5 3 10 6 25 51 703 1478 -14.337 -14.277 -0.005 -13.053 -8.247 -13.728 -12.282 -8.895 -14.664 -6.376 -13.901 -10.054 -8.195 -14.093 -10.265 3.997 -10.456 -6.830 -8.562 -10.523 -10.647 -13.787 ML 7 5 3 10 6 18 42 700 1475 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 42 699 1474 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 38 694 1469 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 43 702 1477 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 43 702 1476 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 132 C G - - MP 12 11 6 16 6 25 51 701 1476 -14.333 -14.272 -0.001 -13.048 -13.328 -13.723 -11.368 -11.649 -10.686 -7.886 -9.037 -10.830 3.979 -9.952 -10.790 -7.858 -10.909 -10.052 -5.769 -11.203 -2.369 -9.592 ML 13 11 6 16 6 17 42 698 1473 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 42 696 1471 -8.242 -6.971 -2.879 -6.949 -0.292 -5.162 -0.838 -1.923 1.471 -1.308 D 15 11 6 16 6 13 38 692 1467 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 43 700 1475 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 43 700 1475 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 131 U A - - MP 18 17 6 22 6 24 49 699 1474 -14.333 -14.272 -0.001 -13.048 -13.328 -13.723 -11.366 -11.637 -10.686 -3.323 -9.039 -10.833 1.937 -9.953 -10.788 -7.849 -10.909 -10.022 3.591 -11.204 -6.742 -9.591 ML 19 17 6 22 6 17 41 696 1471 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 42 694 1469 -8.242 -6.971 -2.879 -6.949 -0.292 -5.162 -0.868 -0.981 -1.560 1.382 D 21 17 6 22 6 13 38 691 1466 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 42 698 1473 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 43 698 1473 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 130 C G - - MP 24 23 6 28 6 22 47 697 1472 -14.333 -14.272 -0.001 -13.048 -13.328 -13.723 -11.362 -11.621 -10.685 -7.859 -9.042 -10.835 3.747 -9.954 -10.786 1.015 -10.909 -9.984 -0.916 -11.204 -6.744 -9.589 ML 25 23 6 28 6 17 41 695 1469 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 41 693 1468 -8.242 -6.971 -2.879 -6.949 -0.292 -5.162 -0.838 -1.923 1.471 -1.308 D 27 23 6 28 6 13 38 690 1465 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 42 696 1471 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 42 696 1471 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 129 C G - - MP 30 29 6 34 6 20 45 695 1470 -14.333 -14.272 -0.001 -13.048 -13.328 -13.723 -11.233 -11.422 -10.611 -1.901 -8.997 -10.798 3.750 -9.895 -10.695 0.755 -10.844 -9.640 -1.501 -11.106 -2.125 -9.491 ML 31 29 6 34 6 16 41 693 1468 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 40 691 1466 -8.242 -6.971 -2.879 -6.949 -0.292 -5.162 -0.838 -1.923 1.471 -1.308 D 33 29 6 34 6 13 38 689 1464 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 41 694 1469 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 41 694 1469 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 128 G C - - MP 36 35 6 40 6 18 43 693 1468 -14.333 -14.272 -0.001 -13.048 -13.328 -13.723 -10.448 -9.312 -10.113 -1.157 -9.313 -10.274 -0.629 -9.930 -10.163 3.723 -10.360 -7.066 0.448 -10.134 -1.674 -9.035 ML 37 35 6 40 6 15 40 691 1466 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 39 690 1465 -8.242 -6.971 -2.879 -6.949 -0.292 -5.162 -0.936 1.308 -1.717 -0.519 D 39 35 6 40 6 12 38 688 1463 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 41 692 1467 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 41 692 1467 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 127 G C - - MP 42 41 6 46 4 16 41 691 1466 -13.539 -13.746 -0.001 -12.160 -10.858 -8.955 -11.219 1.316 -12.872 -11.154 -8.009 -11.240 -10.164 3.391 -10.624 -6.491 1.582 -11.106 -10.055 -9.848 ML 43 41 6 46 4 14 39 690 1465 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 38 689 1463 -6.186 -5.215 -3.082 -0.249 1.514 -1.680 -1.380 -1.162 D 45 41 6 46 4 12 37 688 1463 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 40 691 1466 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 40 691 1465 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 14 39 689 1464 -14.450 -0.000 -13.104 -10.369 -5.050 -11.334 1.989 D 49 47 6 50 3 12 37 687 1462 -8.061 -3.574 -0.132 IL 50 50 3 50 3 14 39 690 1464 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 13 38 688 1463 -15.103 -0.000 0.455 -3.593 1.347 -8.223 D 52 50 3 53 2 12 37 687 1462 -8.663 -0.004 IL 53 53 3 53 2 13 38 688 1463 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 12 37 687 1462 [ BEGR 46 ] - - - - - - S 55 54 1 56 3 0 1 34 56 -14.454 -0.000 -13.108 IL 56 56 2 56 3 1 1 38 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 102 - u - - - ML 57 56 2 59 3 1 1 34 56 -14.454 -0.061 -4.586 -1.094 0.382 -1.572 0.920 D 58 56 2 59 3 0 0 33 55 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 37 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 103 - G - - - ML 60 59 3 62 3 1 1 33 55 -14.393 -0.000 -13.047 -8.945 -5.194 1.989 -9.676 D 61 59 3 62 3 0 0 32 54 -11.324 -0.028 -5.716 IL 62 62 3 62 3 1 1 36 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 104 - A - - - ML 63 62 3 65 3 1 1 32 54 -3.764 -0.110 -13.108 1.943 -3.126 -4.752 -8.345 D 64 62 3 65 3 0 0 30 53 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 32 54 -5.473 -0.038 -8.174 0.000 0.000 0.000 0.000 [ MATL 50 ] 106 - C - - - ML 66 65 3 68 5 1 1 31 53 -13.389 -0.000 -13.205 -13.417 -14.308 -9.556 1.952 -9.961 -2.956 D 67 65 3 68 5 0 0 29 52 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 31 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 107 126 C G - - MP 69 68 3 73 6 2 2 30 52 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -10.924 -10.996 -6.241 -0.881 -8.875 -10.697 3.569 -3.586 -10.469 -6.920 -6.254 -8.999 1.136 -10.859 0.341 -9.250 ML 70 68 3 73 6 1 1 28 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 28 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 29 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 29 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 108 125 C G - - MP 75 74 6 79 6 2 2 28 50 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -8.961 -8.679 -6.123 1.245 -7.751 -9.709 3.457 -8.425 -8.797 0.827 -6.169 -6.263 -0.542 -9.127 -3.001 -7.521 ML 76 74 6 79 6 1 1 26 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 24 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 27 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 27 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 109 124 G C - - MP 81 80 6 85 6 2 2 26 48 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -12.319 -6.118 -14.892 -1.896 -13.925 -6.238 -8.198 -14.235 -10.266 3.970 -10.453 -6.835 -8.569 -6.267 -10.658 -14.133 ML 82 80 6 85 6 1 1 25 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 25 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 26 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 25 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 110 123 G C - - MP 87 86 6 91 6 2 2 24 46 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -12.282 -8.895 -14.664 -6.376 -13.901 -10.054 -8.195 -14.093 -10.265 3.997 -10.456 -6.830 -8.562 -10.523 -10.647 -13.787 ML 88 86 6 91 6 1 1 24 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 25 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 23 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 24 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 24 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 111 122 G C - - MP 93 92 6 97 4 2 2 22 44 -13.544 -13.751 -0.001 -12.165 -12.282 -8.895 -14.664 -6.376 -13.901 -10.054 -8.195 -14.093 -10.265 3.997 -10.456 -6.830 -8.562 -10.523 -10.647 -13.787 ML 94 92 6 97 4 1 1 24 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 24 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 23 45 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 25 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 112 - U - - - ML 99 98 6 101 3 1 1 20 42 -14.454 -0.000 -13.108 -11.622 -10.308 -13.108 2.000 D 100 98 6 101 3 0 0 23 46 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 113 - U - - - ML 102 101 3 104 3 1 1 19 41 -8.297 -0.005 -13.108 -6.634 -3.392 -7.059 1.959 D 103 101 3 104 3 0 0 23 46 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 25 47 -2.168 -1.524 -1.218 0.000 0.000 0.000 0.000 [ MATL 58 ] 115 - C - - - ML 105 104 3 107 3 1 1 14 36 -14.450 -0.000 -13.104 -4.476 1.950 -4.495 -4.440 D 106 104 3 107 3 0 0 24 46 -0.461 -3.537 -2.416 IL 107 107 3 107 3 1 1 24 47 -1.175 -0.909 -5.349 0.000 0.000 0.000 0.000 [ MATL 59 ] 118 - A - - - ML 108 107 3 110 3 1 1 12 30 -14.454 -0.000 -13.108 1.720 -4.390 -0.713 -4.381 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 119 - A - - - ML 111 110 3 113 3 1 1 10 29 -14.454 -0.000 -13.108 1.952 -4.511 -4.539 -4.499 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 120 - A - - - ML 114 113 3 116 3 1 1 9 27 -14.454 -0.000 -13.108 1.999 -10.436 -9.672 -9.775 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 121 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -11.622 -10.308 -13.108 2.000 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 1 18 666 1441 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 182 1 18 666 1441 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 3 28 47 -0.001 -12.458 -11.866 -12.506 [ MATP 15 ] 10 28 G U - - MP 124 123 1 128 6 2 6 28 47 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -10.364 -9.024 -10.558 -5.336 -12.684 -13.845 -8.145 -10.600 -10.119 -0.917 -10.788 3.948 -8.077 -11.863 -9.977 -9.157 ML 125 123 1 128 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 U A - - MP 130 129 6 134 6 2 6 26 45 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -10.934 -10.157 -10.643 -6.451 -9.605 -11.366 -5.305 -10.152 -10.520 -0.944 -10.869 -7.634 3.947 -11.405 -7.288 -9.426 ML 131 129 6 134 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 G C - - MP 136 135 6 140 6 2 5 24 43 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -10.900 -8.756 -11.114 0.796 -11.424 -10.212 -0.106 -11.274 -10.069 3.711 -10.340 -6.505 -2.194 -10.274 -8.742 -9.973 ML 137 135 6 140 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 u u - - MP 142 141 6 146 4 2 4 22 41 -13.544 -13.751 -0.001 -12.165 -11.367 -11.622 -10.690 -7.861 -9.047 -10.841 -4.759 -9.959 -10.791 -7.841 -10.914 -9.982 -0.007 -1.934 2.798 2.951 ML 143 141 6 146 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 27 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 26 44 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 1 29 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 148 147 6 150 3 1 3 20 38 -14.454 -0.000 -13.108 1.999 -10.436 -9.672 -9.775 D 149 147 6 150 3 0 0 22 41 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 151 150 3 153 3 1 2 19 37 -14.454 -0.000 -13.108 -2.974 -10.740 1.953 -9.727 D 152 150 3 153 3 0 0 21 40 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 154 153 3 156 3 1 1 18 36 -14.454 -0.068 -4.443 -2.637 1.209 -4.581 0.572 D 155 153 3 156 3 0 0 20 39 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 157 156 3 159 3 1 1 17 35 -14.386 -0.049 -4.899 -3.747 1.893 -5.889 -2.366 D 158 156 3 159 3 0 0 16 34 -11.464 -6.977 -0.012 IL 159 159 3 159 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - C - - - ML 160 159 3 162 3 1 1 15 34 -14.337 -0.000 -12.992 -4.139 1.967 -5.108 -7.909 D 161 159 3 162 3 0 0 15 33 -12.210 -0.015 -6.601 IL 162 162 3 162 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 163 162 3 165 3 1 1 14 33 -14.454 -0.000 -13.108 -8.987 -10.756 1.999 -9.744 D 164 162 3 165 3 0 0 18 36 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - - - ML 166 165 3 168 3 1 1 13 31 -14.454 -0.000 -13.108 -8.987 -10.756 1.999 -9.744 D 167 165 3 168 3 0 0 16 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - C - - - ML 169 168 3 171 3 1 1 12 30 -14.454 -0.047 -4.967 -3.870 1.545 -7.987 0.014 D 170 168 3 171 3 0 0 15 34 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - C - - - ML 172 171 3 174 3 1 1 10 29 -14.407 -0.000 -13.062 -9.507 1.972 -9.909 -3.738 D 173 171 3 174 3 0 0 11 30 -10.955 -0.037 -5.346 IL 174 174 3 174 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - A - - - ML 175 174 3 177 3 1 1 9 27 -14.454 -0.000 -13.108 1.977 -4.034 -9.550 -9.524 D 176 174 3 177 3 0 0 13 32 -6.174 -1.687 -0.566 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - A - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 1.999 -10.436 -9.672 -9.775 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 182 122 1 183 3 0 0 647 1422 -14.454 -0.000 -13.108 IL 183 183 2 183 3 1 1 649 1423 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - g - - - ML 184 183 2 186 5 1 1 647 1422 -13.389 -0.000 -13.205 -13.417 -14.308 -0.791 -1.749 0.708 0.576 D 185 183 2 186 5 0 0 644 1419 -4.959 -0.803 -4.221 -2.596 -2.508 IL 186 186 3 186 5 1 1 647 1422 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 30 101 C G - - MP 187 186 3 191 6 2 2 646 1421 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -8.662 -2.509 -8.660 -0.753 -0.767 -9.501 3.098 -8.178 -8.519 -1.597 -9.031 -5.931 2.319 -8.844 -0.539 -4.783 ML 188 186 3 191 6 1 1 643 1418 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 642 1417 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 636 1411 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 645 1420 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 645 1420 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 100 g c - - MP 193 192 6 197 6 2 2 644 1419 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -9.393 -8.910 -9.261 0.407 -8.206 -9.912 1.971 -8.863 -9.241 2.963 -9.649 -6.543 0.066 -9.440 0.909 -7.951 ML 194 192 6 197 6 1 1 641 1416 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 640 1415 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 635 1410 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 643 1418 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 643 1418 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 32 99 G C - - MP 199 198 6 203 6 2 2 642 1417 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -12.136 -8.900 -13.966 -0.830 -13.836 -10.106 -8.195 -13.615 -10.259 3.946 -10.467 -6.806 -8.542 -10.557 -10.618 -12.851 ML 200 198 6 203 6 1 1 639 1414 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 638 1413 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 633 1408 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 641 1416 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 641 1416 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 33 98 G C - - MP 205 204 6 209 6 2 2 640 1415 -14.337 -14.277 -0.001 -13.053 -13.333 -13.728 -12.141 -8.906 -13.939 -6.328 -13.643 -10.105 0.914 -13.556 -10.262 3.777 -10.468 -1.356 -8.498 -10.557 -10.516 -12.836 ML 206 204 6 209 6 1 1 638 1413 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 636 1410 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 632 1407 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 639 1414 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 639 1414 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 34 97 C G - - MP 211 210 6 215 4 2 2 638 1413 -13.544 -13.751 -0.001 -12.165 -11.256 -11.137 -10.679 1.201 -9.155 -10.944 3.748 -10.000 -10.724 -2.988 -10.903 -9.034 -3.055 -11.251 -6.855 -9.554 ML 212 210 6 215 4 1 1 636 1411 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 633 1407 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 214 210 6 215 4 0 0 631 1406 -4.568 -4.250 -2.265 -0.520 IL 215 215 5 215 4 1 1 638 1412 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 637 1412 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - C - - - ML 217 216 6 219 3 1 1 636 1411 -14.454 -0.000 -13.108 -3.911 1.966 -8.893 -5.370 D 218 216 6 219 3 0 0 628 1403 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 636 1411 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - U - - - ML 220 219 3 222 3 1 1 635 1410 -14.454 -0.000 -13.108 -11.622 -10.308 -13.108 2.000 D 221 219 3 222 3 0 0 624 1399 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 635 1409 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - u - - - ML 223 222 3 225 3 1 1 634 1409 -14.454 -0.000 -13.108 -0.062 0.068 -0.081 0.068 D 224 222 3 225 3 0 0 618 1393 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 633 1408 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - u - - - ML 226 225 3 228 3 1 1 633 1408 -14.454 -0.000 -13.108 -0.062 -0.080 -0.081 0.203 D 227 225 3 228 3 0 0 608 1382 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 631 1406 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 39 - c - - - ML 229 228 3 231 3 1 1 632 1407 -14.454 -0.000 -13.108 -0.062 0.187 -0.082 -0.061 D 230 228 3 231 3 0 0 587 1362 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 629 1404 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 40 - G - - - ML 232 231 3 234 3 1 1 631 1406 -1.689 -0.536 -13.108 -0.117 -9.927 1.621 -9.395 D 233 231 3 234 3 0 0 499 1274 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 679 1454 -0.034 -5.413 -15.583 0.000 0.000 0.000 0.000 [ MATL 44 ] 96 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.738 -0.601 -9.078 -8.314 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Glu ACC arch-Glu-r2-033017 LENG 75 MAXL 672 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:31:33 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Glu-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Glu-r2-033017.sto NSEQ 339 EFFN 3.364861 CKSUM 1903879216 STATS LOCAL MSV -8.5897 0.71892 STATS LOCAL VITERBI -9.2564 0.71892 STATS LOCAL FORWARD -3.0498 0.71892 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.51920 1.27898 1.24795 1.53387 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 0.00000 * 1 2.85811 3.65335 0.11767 3.58532 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03449 4.14222 4.01680 1.46634 0.26236 1.09861 0.40547 2 3.55113 0.17666 3.37863 2.31116 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.14219 0.38437 3 2.70678 1.15603 2.51711 0.62022 3 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.14219 0.38437 4 2.56450 0.55752 1.83854 1.65356 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.14219 0.38437 5 2.39163 0.60205 1.85349 1.58894 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.14219 0.38437 6 1.88343 2.10026 0.54668 1.91977 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.14219 0.38437 7 1.68327 2.24374 0.61460 1.78788 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.14219 0.38437 8 2.90505 2.75608 3.43000 0.16331 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.14219 0.38437 9 1.12706 2.50285 0.72959 2.18873 9 g - - , 1.38629 1.38629 1.38629 1.38629 0.03236 4.14009 4.14009 1.46634 0.26236 1.01677 0.44904 10 2.11157 3.39539 0.21809 3.18510 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 11 3.00634 2.03787 2.57845 0.29527 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 12 1.81868 2.31709 0.43840 2.36303 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 13 2.04985 1.59528 1.90080 0.65596 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 14 0.09716 3.67625 3.35995 3.42544 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 15 2.64281 3.73278 0.14024 3.33081 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 16 1.87643 0.88261 2.49600 1.04769 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.06376 4.14222 3.08178 1.46634 0.26236 1.09861 0.40547 17 2.47841 0.30520 3.11203 2.00519 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05577 4.11177 3.27372 1.46634 0.26236 1.58671 0.22891 18 2.70373 0.22098 3.27376 2.37035 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09005 4.09005 1.46634 0.26236 0.38950 1.13132 19 3.13503 4.06516 0.09110 3.63368 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 20 3.13503 4.06516 0.09110 3.63368 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 21 2.12903 0.61276 2.77619 1.28403 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05405 4.14222 3.30417 1.46634 0.26236 1.09861 0.40547 22 3.13828 0.16175 3.71239 2.50627 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03299 4.12115 4.12115 1.46634 0.26236 0.62332 0.76822 23 0.14181 3.20004 3.10114 3.06930 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 24 0.09716 3.67625 3.35995 3.42544 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 25 1.67420 2.02507 0.97537 1.19237 25 g - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 26 2.59951 0.49897 2.16253 1.59208 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 27 0.33224 2.73813 1.87405 2.74120 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 28 3.34998 2.01642 3.16241 0.23641 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 29 1.42779 1.90102 1.25526 1.12164 29 u - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 30 1.98260 0.97690 1.83335 1.12106 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 31 1.85471 1.40783 1.00662 1.45511 31 g - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 32 2.54710 3.52429 0.15099 3.43081 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 33 2.18405 2.24398 0.35079 2.56074 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 34 1.94692 0.56750 2.20235 1.71590 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 35 2.85190 0.18552 3.53990 2.49405 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 36 3.02744 2.92244 3.55844 0.14010 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 37 1.28078 1.50522 1.58129 1.22247 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 38 1.28075 1.54686 1.58113 1.19232 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 39 1.28102 1.46992 1.58139 1.24962 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 40 1.44859 2.92148 0.45872 2.53636 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.26728 1.52027 4.14222 3.71919 0.02455 1.09861 0.40547 41 0.39680 1.96595 2.55130 2.21155 96 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 42 1.96087 2.37875 0.50831 1.80127 97 G - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 43 2.80531 0.40934 2.12152 1.86062 98 C - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 44 3.62971 0.17825 3.35996 2.28274 99 C - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 45 1.80136 1.09672 1.17828 1.64426 100 c - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 46 1.28819 1.98491 0.86472 1.79775 101 g - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 47 1.54730 1.33686 2.02243 0.93605 102 u - - , 1.38629 1.38629 1.38629 1.38629 0.06074 4.14222 3.14548 1.46634 0.26236 1.09861 0.40547 48 2.91161 3.70104 0.12006 3.38001 103 G - - , 1.38629 1.38629 1.38629 1.38629 0.03321 4.11468 4.11468 1.46634 0.26236 0.55283 0.85642 49 0.19919 2.86719 2.79319 2.77227 104 A - - , 1.38629 1.38629 1.38629 1.38629 0.08327 2.74876 4.14222 0.43900 1.03474 1.09861 0.40547 50 3.07461 0.17975 3.65394 2.38138 106 C - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 51 2.23508 0.72119 2.10282 1.25621 107 c - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 52 1.84949 0.87359 1.63400 1.46931 108 c - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 53 2.70774 3.50177 0.13855 3.42494 109 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 54 2.87131 3.67163 0.11553 3.61007 110 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 55 2.87041 3.67038 0.11568 3.60837 111 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 56 3.02744 2.92244 3.55844 0.14010 112 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 57 2.65265 2.48351 3.16307 0.21842 113 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 58 2.72370 0.22598 3.24789 2.32502 115 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03441 4.02084 4.14222 1.36617 0.29448 1.09861 0.40547 59 0.41926 2.57981 1.82150 2.25481 118 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 60 0.17920 3.06274 2.85021 2.82222 119 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 61 0.09716 3.67625 3.35995 3.42544 120 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 62 3.02744 2.92244 3.55844 0.14010 121 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 63 3.78172 0.13898 3.51392 2.56151 122 C - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 64 3.78228 0.13894 3.51419 2.56162 123 C - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 65 3.62141 0.16225 3.34722 2.43218 124 C - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 66 1.69386 1.77271 0.77892 1.67442 125 g - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 67 1.54583 2.27731 0.59616 2.01453 126 G - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 68 1.94858 0.68988 2.06337 1.47465 127 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 69 2.16380 0.61584 1.90187 1.63150 128 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 70 1.84696 1.97655 0.52842 2.16978 129 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 71 1.88242 1.94815 0.49865 2.32392 130 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 72 0.69583 2.68318 1.05298 2.47581 131 a - - ) 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 73 2.62888 3.53115 0.14806 3.31901 132 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 1.09861 0.40547 74 3.73746 0.14166 3.49230 2.55310 133 C - - ) 1.38629 1.38629 1.38629 1.38629 0.18764 1.86305 4.14222 1.12668 0.39172 1.09861 0.40547 75 0.09716 3.67625 3.35995 3.42544 137 A - - : 1.38629 1.38629 1.38629 1.38629 0.01628 4.12620 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Gly ACC arch-Gly-r2-033017 STATES 236 NODES 63 CLEN 74 W 367 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:38:39 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Gly-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Gly-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Gly-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Gly-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 544 EFFN 544.000000 CKSUM 884259001 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.8015 0.71893 ECMLC 0.72311 -6.49938 2.31557 1600000 703813 0.001705 ECMGC 0.30204 -47.93536 -33.10201 1600000 35302 0.011331 ECMLI 0.66726 -6.96403 2.51690 1600000 670861 0.001789 ECMGI 0.32791 -43.60572 -30.06503 1600000 33913 0.011795 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 367 717 -14.018 -15.264 -0.001 -11.717 IL 1 1 2 1 4 19 42 369 718 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 44 369 719 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 140 - A - - MR 3 2 3 5 5 25 48 368 718 -1.748 -0.510 -13.883 -14.095 -14.987 1.818 -10.119 -1.084 -9.980 D 4 2 3 5 5 16 39 364 714 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 24 49 369 719 -0.588 -1.580 -14.223 -12.390 -13.496 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 136 G C - - MP 6 5 3 10 6 24 47 366 716 -15.008 -14.947 -0.050 -13.724 -4.893 -14.399 -12.756 -9.572 -14.447 0.003 -14.482 -10.797 -8.866 -14.144 -10.927 3.905 -11.142 -7.468 -9.205 -11.240 -11.278 -13.290 ML 7 5 3 10 6 18 40 363 713 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 41 361 711 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 37 357 707 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 42 365 714 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 42 365 714 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 135 C G - - MP 12 11 6 16 6 25 49 364 714 -14.959 -14.898 -0.000 -13.675 -13.954 -14.349 -11.999 -12.261 -11.320 -8.499 -9.675 -11.469 3.796 -10.588 -11.422 0.991 -11.544 -10.633 -6.407 -11.839 -3.318 -10.224 ML 13 11 6 16 6 18 40 362 711 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 42 357 707 -11.584 -10.313 -6.222 -10.291 -0.026 -8.505 -5.115 -6.780 1.980 -5.857 D 15 11 6 16 6 14 37 356 705 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 41 363 712 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 42 363 712 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 134 G C - - MP 18 17 6 22 6 23 47 362 712 -14.959 -14.898 -0.012 -13.675 -6.890 -14.349 -12.237 -9.545 -13.132 1.671 -14.104 -10.990 -2.874 -13.040 -10.856 3.663 -11.142 -7.328 -9.049 -11.341 -11.061 -11.814 ML 19 17 6 22 6 18 40 360 709 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 41 356 706 -11.584 -10.313 -6.222 -10.291 -0.026 -8.505 -5.723 1.975 -6.187 -4.831 D 21 17 6 22 6 13 36 354 704 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 41 361 711 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 41 361 710 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 133 G C - - MP 24 23 6 28 6 22 45 360 710 -14.947 -14.886 -0.000 -13.663 -13.942 -14.337 -8.958 -5.737 -8.792 1.442 -9.535 -9.406 1.457 -9.342 -9.173 3.065 -9.448 -2.885 0.563 -8.670 -0.946 -7.722 ML 25 23 6 28 6 17 39 358 707 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 40 355 705 -11.883 -10.612 -6.521 -10.590 -0.021 -8.804 -6.026 1.980 -6.480 -5.132 D 27 23 6 28 6 13 36 353 703 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 40 359 709 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 41 359 709 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 132 C G - - MP 30 29 6 34 6 20 43 358 708 -14.947 -14.886 -0.000 -13.663 -13.942 -14.337 -9.263 -8.964 -9.262 -0.874 -8.126 -10.104 3.367 -8.780 -9.120 1.163 -9.633 -4.265 1.163 -9.445 -0.819 -5.524 ML 31 29 6 34 6 16 39 356 706 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 39 354 703 -11.883 -10.612 -6.521 -10.590 -0.021 -8.804 -5.391 -7.090 1.984 -6.139 D 33 29 6 34 6 13 36 352 702 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 40 357 707 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 40 357 707 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 131 G C - - MP 36 35 6 40 6 18 41 356 706 -14.947 -14.886 -0.000 -13.663 -13.942 -14.337 -9.067 -7.927 -8.928 0.355 -5.740 -9.577 1.131 -9.223 -9.200 3.422 -9.527 -4.081 0.600 -8.860 -2.310 -7.789 ML 37 35 6 40 6 16 39 355 704 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 38 353 702 -11.883 -10.612 -2.334 -10.590 -0.326 -8.804 -3.824 -0.657 1.699 -4.337 D 39 35 6 40 6 13 36 352 701 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 39 355 705 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 39 355 705 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 130 G C - - MP 42 41 6 46 4 16 39 354 704 -14.174 -14.381 -0.000 -12.795 -11.774 -9.536 -12.289 1.274 -13.772 -11.299 -8.665 -12.319 -10.807 3.653 -11.176 -2.363 -0.315 -11.467 -10.820 -10.950 ML 43 41 6 46 4 14 38 353 703 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 36 351 701 -9.602 -8.631 -6.498 -0.022 -5.723 1.975 -6.187 -4.831 D 45 41 6 46 4 12 36 351 701 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 38 354 704 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 38 354 703 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 14 37 352 702 -15.084 -0.000 -13.738 -11.375 -5.341 -12.437 1.991 D 49 47 6 50 3 12 35 350 700 -11.703 -7.216 -0.010 IL 50 50 3 50 3 14 38 353 702 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - a - - - ML 51 50 3 53 2 13 36 351 701 -15.738 -0.000 0.982 -0.046 0.077 -9.214 D 52 50 3 53 2 12 35 350 700 -10.342 -0.001 IL 53 53 3 53 2 13 37 352 701 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 12 35 350 700 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 2 298 647 -15.134 -0.000 -13.788 IL 56 56 2 56 3 1 3 299 648 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 79 - u - - - ML 57 56 2 59 3 1 2 298 647 -15.134 -0.683 -1.408 -0.336 -0.054 -1.220 0.860 D 58 56 2 59 3 0 1 284 634 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 2 306 655 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 80 - G - - - ML 60 59 3 62 3 1 2 306 655 -1.631 -0.563 -13.105 -2.263 -10.703 1.922 -9.706 D 61 59 3 62 3 0 1 127 476 -15.147 -0.002 -9.539 IL 62 62 3 62 3 1 2 326 676 -0.076 -4.285 -14.510 0.000 0.000 0.000 0.000 [ MATL 47 ] 109 - A - - - ML 63 62 3 65 3 1 1 29 47 -15.134 -0.287 -2.473 1.422 -1.475 -0.269 -2.924 D 64 62 3 65 3 0 0 31 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 110 - a - - - ML 66 65 3 68 3 1 1 28 47 -14.847 -0.000 -13.501 0.653 -3.640 -0.242 0.586 D 67 65 3 68 3 0 0 27 46 -14.085 -0.004 -8.477 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 111 - C - - - ML 69 68 3 71 5 1 1 27 45 -14.068 -0.000 -13.883 -14.095 -14.987 -0.882 1.751 -6.193 -3.667 D 70 68 3 71 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 112 129 C G - - MP 72 71 3 76 6 2 2 26 44 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -12.044 -12.321 -11.366 -8.553 -4.484 -11.512 3.531 -10.632 -11.468 0.966 -11.590 -10.714 -1.102 -11.881 0.979 -10.269 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 113 128 C G - - MP 78 77 6 82 6 2 2 24 42 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -12.051 -12.326 0.768 -8.563 -9.722 -11.516 3.553 -10.636 -11.473 -2.522 -11.594 -10.720 1.247 -11.887 -7.425 -10.275 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 114 127 G C - - MP 84 83 6 88 6 2 2 22 40 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -12.960 -9.565 -15.380 -7.049 -14.578 -10.722 -8.866 -14.793 -10.935 3.998 -11.125 -7.501 -9.234 -11.191 -11.320 -14.524 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 115 126 G C - - MP 90 89 6 94 6 2 2 20 38 -3.412 -14.947 -0.143 -13.724 -14.004 -14.399 -12.873 -9.568 -14.922 -2.173 -14.540 -10.752 -8.867 -14.491 -10.932 3.979 -11.132 -7.487 -9.222 -11.211 -11.304 -13.887 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 19 38 -8.388 -8.651 -0.011 -10.306 -11.082 -10.743 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 117 125 G C - - MP 96 95 6 100 4 2 2 18 36 -14.224 -14.431 -0.000 -12.845 -12.960 -9.565 -15.380 -7.049 -14.578 -10.722 -8.866 -14.793 -10.935 3.998 -11.125 -7.501 -9.234 -11.191 -11.320 -14.524 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 118 - U - - - ML 102 101 6 104 3 1 1 15 33 -15.134 -0.000 -13.788 -12.372 -11.018 -13.911 2.000 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 119 - U - - - ML 105 104 3 107 3 1 1 14 32 -15.134 -0.000 -13.788 -11.105 -4.169 -12.082 1.980 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 120 - C - - - ML 108 107 3 110 3 1 1 12 31 -15.134 -0.000 -13.788 -11.487 1.999 -12.238 -10.027 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 121 - A - - - ML 111 110 3 113 3 1 1 11 30 -15.134 -0.000 -13.788 1.156 -10.064 0.823 -9.975 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 122 - A - - - ML 114 113 3 116 3 1 1 10 28 -15.134 -0.000 -13.788 1.999 -11.093 -10.332 -10.428 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 123 - A - - - ML 117 116 3 119 3 1 1 8 27 -15.134 -0.000 -13.788 1.797 -5.776 -3.897 -1.182 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 124 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -11.103 -4.162 -12.079 1.979 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 16 263 540 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 1 16 263 540 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 38 61 -0.001 -13.133 -12.540 -13.180 [ MATP 15 ] 10 34 G C - - MP 127 126 1 131 6 2 6 38 61 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -11.735 -9.626 -12.206 -1.847 -13.866 -11.564 -8.837 -12.208 -10.866 3.499 -11.276 1.950 -0.884 -11.679 -10.955 -10.834 ML 128 126 1 131 6 1 2 36 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 2 36 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 1 33 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 2 37 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 37 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 33 U A - - MP 133 132 6 137 6 2 6 36 59 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -12.053 -12.333 -11.370 -8.570 -9.721 -11.515 0.712 -10.636 -11.474 -8.542 -11.594 -10.735 3.843 -11.887 -7.424 -10.276 ML 134 132 6 137 6 1 2 34 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 2 34 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 1 32 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 35 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 35 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 32 C G - - MP 139 138 6 143 6 2 6 34 57 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -10.383 -10.178 -10.224 -1.546 -8.929 -10.838 3.305 -9.668 -10.146 1.716 -10.553 -7.833 1.058 -10.493 -1.348 -8.885 ML 140 138 6 143 6 1 2 32 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 2 32 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 1 30 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 2 33 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 33 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 31 u g - - MP 145 144 6 149 4 2 5 32 55 -14.224 -14.431 -0.000 -12.845 -12.053 -12.335 -11.370 -8.572 -1.524 -11.514 1.091 -4.546 -11.474 -8.543 -11.594 -10.739 -0.989 -11.887 2.959 2.376 ML 146 144 6 149 4 1 2 31 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 31 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 30 54 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 2 33 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 2 32 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 3 30 53 -15.134 -0.000 -13.788 1.999 -11.093 -10.332 -10.428 D 152 150 6 153 3 0 0 28 52 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 2 31 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 2 29 52 -15.134 -0.000 -13.788 -4.057 -11.438 1.978 -10.414 D 155 153 3 156 3 0 0 27 51 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 2 30 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 28 51 -15.134 -0.865 -1.148 -2.902 1.274 -2.325 0.321 D 158 156 3 159 3 0 0 26 50 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 2 29 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 160 159 3 162 3 1 2 27 51 -0.147 -3.370 -12.922 -5.062 1.795 -8.475 -1.010 D 161 159 3 162 3 0 0 25 49 -15.406 -0.002 -9.798 IL 162 162 3 162 3 1 1 26 50 -8.823 -0.004 -11.523 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - - - ML 163 162 3 165 3 1 2 25 49 -15.134 -0.000 -13.788 -9.660 -11.425 1.999 -10.414 D 164 162 3 165 3 0 0 23 47 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 2 24 48 -15.134 -0.000 -13.788 -9.660 -11.425 1.999 -10.414 D 167 165 3 168 3 0 0 22 46 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 25 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - - - ML 169 168 3 171 3 1 1 23 47 -1.311 -1.800 -1.691 -0.534 -0.983 -2.664 1.404 D 170 168 3 171 3 0 0 18 42 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 23 47 -1.118 -0.892 -12.113 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - U - - - ML 172 171 3 174 3 1 1 8 27 -14.599 -0.000 -13.253 -2.569 -1.178 -8.118 1.760 D 173 171 3 174 3 0 0 7 26 -14.864 -0.002 -9.256 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 30 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.951 -2.919 -10.238 -10.098 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 246 523 -15.134 -0.000 -13.788 IL 180 180 2 180 3 1 1 247 524 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 35 - g - - - ML 181 180 2 183 5 1 1 246 523 -14.068 -0.000 -13.883 -14.095 -14.987 0.093 -1.611 0.897 -0.427 D 182 180 2 183 5 0 0 243 520 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 246 523 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 78 c g - - MP 184 183 3 188 6 2 2 245 522 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -9.317 -9.017 -9.316 -0.622 -5.319 -10.159 2.521 -8.835 -9.175 1.257 -9.688 1.573 1.942 -9.499 -1.462 -7.894 ML 185 183 3 188 6 1 1 242 519 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 242 519 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 237 514 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 244 521 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 244 521 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 77 C G - - MP 190 189 6 194 6 2 2 243 520 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -9.223 -4.988 -9.167 -0.972 -8.457 -9.926 3.004 -8.970 -9.187 1.876 -9.632 1.059 0.444 -2.031 -4.960 -4.861 ML 191 189 6 194 6 1 1 240 517 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 240 517 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 235 512 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 242 519 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 242 519 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 76 G C - - MP 196 195 6 200 6 2 2 241 518 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -11.949 -9.611 -12.553 1.877 -13.994 -11.311 -8.836 -12.529 -5.239 3.605 -11.238 -7.292 -3.014 -11.545 -11.026 -11.196 ML 197 195 6 200 6 1 1 239 516 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 238 515 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 234 511 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 240 517 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 240 517 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 75 G C - - MP 202 201 6 206 6 2 2 239 516 -15.008 -14.947 -0.000 -13.724 -14.004 -14.399 -12.661 -9.597 -14.026 -6.953 -13.900 -10.841 1.871 -13.719 -10.932 3.587 -11.156 -1.677 -9.052 -11.271 -10.950 -12.831 ML 203 201 6 206 6 1 1 237 514 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 236 513 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 233 510 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 238 515 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 238 515 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 40 74 C G - - MP 208 207 6 212 4 2 2 237 514 -14.224 -14.431 -0.000 -12.845 -11.588 -10.773 -11.319 -2.452 -10.333 -12.090 3.721 -10.846 -11.182 1.382 -11.545 -8.234 -6.967 -12.100 -8.014 -10.095 ML 209 207 6 212 4 1 1 235 513 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 234 511 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 232 509 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 236 514 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 236 513 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - C - - - ML 214 213 6 216 3 1 1 235 512 -15.134 -0.000 -13.788 -7.764 1.374 -1.307 -0.000 D 215 213 6 216 3 0 0 230 508 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 235 512 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - U - - - ML 217 216 3 219 3 1 1 234 511 -15.134 -0.000 -13.788 -10.746 -2.880 -11.652 1.950 D 218 216 3 219 3 0 0 228 506 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 234 511 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - u - - - ML 220 219 3 222 3 1 1 233 510 -15.134 -0.000 -13.788 0.005 -0.006 -0.006 0.006 D 221 219 3 222 3 0 0 226 503 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 233 510 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - u - - - ML 223 222 3 225 3 1 1 232 509 -15.134 -0.000 -13.788 0.005 -0.006 -0.006 0.006 D 224 222 3 225 3 0 0 222 499 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 232 509 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - u - - - ML 226 225 3 228 3 1 1 231 508 -15.134 -0.000 -13.788 0.005 -0.006 -0.006 0.006 D 227 225 3 228 3 0 0 214 491 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 230 507 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - A - - - ML 229 228 3 231 3 1 1 230 507 -1.451 -0.657 -13.788 1.887 -10.347 -1.740 -10.090 D 230 228 3 231 3 0 0 180 457 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 244 521 -0.096 -3.959 -15.042 0.000 0.000 0.000 0.000 [ MATL 42 ] 73 - A - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 1.595 -0.335 -5.114 -2.672 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Gly ACC arch-Gly-r2-033017 LENG 74 MAXL 358 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:38:39 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Gly-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Gly-r2-033017.sto NSEQ 544 EFFN 6.279541 CKSUM 884259001 STATS LOCAL MSV -8.2494 0.71893 STATS LOCAL VITERBI -9.4404 0.71893 STATS LOCAL FORWARD -3.0949 0.71893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55467 1.31085 1.20823 1.51220 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 0.00000 * 1 2.58432 4.05741 0.11885 3.94673 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04842 4.54956 3.30502 1.46634 0.26236 1.09861 0.40547 2 3.16542 0.35042 2.00340 2.13252 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02195 4.52308 4.52308 1.46634 0.26236 1.69952 0.20184 3 1.73125 3.18124 0.30381 3.13725 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02857 4.52308 4.05633 1.46634 0.26236 1.69952 0.20184 4 1.67742 1.71855 0.76992 1.76747 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02209 4.51660 4.51660 1.46634 0.26236 1.80272 0.18014 5 2.25576 0.78677 1.72380 1.34130 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02209 4.51660 4.51660 1.46634 0.26236 1.80272 0.18014 6 1.85394 1.88096 0.61231 1.90490 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02209 4.51660 4.51660 1.46634 0.26236 1.33597 0.30503 7 1.75091 2.89900 0.37564 2.47150 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02195 4.52308 4.52308 1.46634 0.26236 1.69952 0.20184 8 3.57376 3.28413 4.10504 0.08557 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02195 4.52308 4.52308 1.46634 0.26236 1.69952 0.20184 9 0.84282 1.61411 1.45273 1.99139 9 a - - , 1.38629 1.38629 1.38629 1.38629 0.02195 4.52308 4.52308 1.46634 0.26236 0.45498 1.00638 10 2.22089 3.06251 0.25499 2.66221 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 11 3.69736 1.65536 3.52723 0.28130 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 12 2.36609 0.78572 1.58824 1.40212 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 13 2.81015 1.43995 2.68833 0.45433 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 14 0.04259 4.47518 4.10746 4.27902 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 15 3.40908 4.62601 0.05989 4.18238 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 16 2.10830 0.73143 2.50388 1.15339 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.45960 4.54956 1.02753 1.46634 0.26236 1.09861 0.40547 17 2.48553 0.36749 3.12231 1.71372 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.96053 0.50897 4.12289 0.05305 2.96298 0.05740 2.88628 18 3.86205 4.86374 0.04221 4.37495 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 19 3.86205 4.86374 0.04221 4.37495 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 20 1.57250 1.82453 2.35007 0.62396 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.84376 1.13659 1.39031 0.64472 0.74404 1.09861 0.40547 21 2.22339 1.97706 2.90402 0.35885 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02816 4.27719 4.27719 1.46634 0.26236 0.08150 2.54760 22 0.10732 3.20139 3.52096 3.45820 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 23 2.01005 2.85314 0.61742 1.31296 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 24 1.61536 1.68342 0.69611 2.14624 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 25 0.31288 3.67539 1.55535 3.43547 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 26 2.84281 0.45767 2.86450 1.37844 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 27 1.27763 2.02951 1.03109 1.45550 35 g - - , 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 28 2.11697 1.12751 1.32062 1.24204 36 c - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 29 2.03030 1.06622 1.17167 1.53922 37 c - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 30 1.60133 3.14341 0.35435 2.92606 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 31 2.37025 1.82852 0.38459 2.73090 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 32 2.80274 0.43901 1.75392 2.10711 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 33 2.27585 0.66225 2.25517 1.28465 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 34 3.29260 2.75961 3.80958 0.13083 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 35 1.27868 1.50963 1.52831 1.25984 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 36 1.27868 1.50963 1.52831 1.25984 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 37 1.27868 1.50963 1.52831 1.25984 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 38 0.15357 3.63677 2.47342 3.45056 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.36074 1.23008 4.54956 2.73251 0.06727 1.09861 0.40547 39 0.43344 1.77003 2.72623 2.15477 73 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 40 2.35917 1.82929 0.40253 2.57247 74 G - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 41 2.98081 0.43818 1.75797 2.02766 75 C - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 42 3.14084 0.39760 2.95572 1.45767 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 43 1.76304 1.40625 0.97489 1.57899 77 g - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 44 1.41881 1.73241 1.00473 1.53712 78 g - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 45 1.40522 1.48917 1.94704 0.95080 79 u - - , 1.38629 1.38629 1.38629 1.38629 0.37301 4.54956 1.20142 1.46634 0.26236 1.09861 0.40547 46 2.51709 3.72882 0.15098 3.34041 80 G - - , 1.38629 1.38629 1.38629 1.38629 0.28512 1.45594 4.20679 2.94662 0.05395 0.06794 2.72293 47 0.59648 2.10877 1.64077 2.00967 109 A - - , 1.38629 1.38629 1.38629 1.38629 0.17414 4.54956 1.90212 1.46634 0.26236 1.09861 0.40547 48 1.05982 2.12524 1.60292 1.10031 110 a - - , 1.38629 1.38629 1.38629 1.38629 0.02485 4.40027 4.40027 1.46634 0.26236 0.13249 2.08678 49 2.04128 0.32057 3.33066 2.21980 111 C - - , 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 50 2.73832 0.59319 1.90466 1.45291 112 C - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 51 2.11613 0.55571 2.51942 1.49017 113 C - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 52 3.42051 4.40281 0.05939 4.36462 114 G - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 53 3.17521 4.33879 0.07123 4.27470 115 G - - < 1.38629 1.38629 1.38629 1.38629 0.09889 2.48184 4.54956 0.23620 1.55886 1.09861 0.40547 54 3.40504 4.37741 0.06074 4.33011 117 G - - < 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 55 3.80815 3.59518 4.35417 0.06454 118 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 56 3.46983 3.09235 3.99315 0.09978 119 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 57 4.23527 0.05242 4.69930 3.59374 120 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 58 0.64808 3.26761 0.95261 2.93517 121 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 59 0.04259 4.47518 4.10746 4.27902 122 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 60 0.27222 2.88351 2.79582 2.10942 123 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 61 3.46885 3.09072 3.99212 0.09991 124 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 62 4.42677 0.07441 4.25222 3.08959 125 C - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 63 4.38228 0.08631 4.19855 2.89717 126 C - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 64 4.44776 0.07377 4.26378 3.09349 127 C - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 65 1.63692 2.67537 0.41413 2.58200 128 G - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 66 1.98067 1.99908 0.44045 2.49112 129 G - - > 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 67 2.65326 0.43210 2.71285 1.54138 130 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 68 2.11245 0.68330 1.72502 1.62993 131 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 69 1.56892 1.85276 0.68498 2.03390 132 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 70 2.01933 0.84674 1.55048 1.48590 133 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 71 3.31862 0.34505 2.99904 1.58098 134 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 72 2.39982 2.07048 0.31890 2.87897 135 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54956 4.54956 1.46634 0.26236 1.09861 0.40547 73 4.05949 0.13933 3.87808 2.38480 136 C - - ) 1.38629 1.38629 1.38629 1.38629 0.28836 1.42737 4.54956 1.11050 0.39957 1.09861 0.40547 74 0.21025 3.49681 2.10448 3.28563 140 A - - : 1.38629 1.38629 1.38629 1.38629 0.01074 4.53893 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-His ACC arch-His-r2-033017 STATES 233 NODES 62 CLEN 73 W 591 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:44:22 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-His-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-His-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-His-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-His-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-His-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-His-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-His-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 214 EFFN 214.000000 CKSUM 2070213119 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7715 0.71890 ECMLC 0.62191 -7.16706 2.95607 1600000 650660 0.001844 ECMGC 0.29792 -48.27766 -32.51600 1600000 43793 0.009134 ECMLI 0.51791 -9.08694 2.98268 1600000 622207 0.001929 ECMGI 0.31460 -44.02079 -29.26017 1600000 41571 0.009622 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 591 1230 -12.680 -13.925 -0.001 -10.379 IL 1 1 2 1 4 15 40 593 1233 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 41 594 1233 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 134 - C - - MR 3 2 3 5 5 21 48 593 1232 -4.429 -0.069 -12.547 -12.759 -13.651 -1.197 1.748 -2.883 -3.840 D 4 2 3 5 5 11 36 590 1229 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 45 594 1234 -0.637 -1.507 -10.269 -8.437 -9.543 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 130 G C - - MP 6 5 3 10 6 21 48 592 1231 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.560 -8.261 -13.539 -5.712 -12.948 -9.437 -7.444 -13.063 -9.620 3.900 -9.818 -6.183 0.028 -9.897 -9.842 -12.514 ML 7 5 3 10 6 13 38 589 1228 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 38 588 1227 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 9 35 583 1222 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 39 590 1230 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 14 39 590 1229 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 129 C G - - MP 12 11 6 16 6 21 47 590 1229 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.714 -10.994 -10.031 -7.231 -8.382 -10.176 3.904 -9.297 -10.135 -7.203 -10.255 -9.396 -0.014 -10.548 -6.085 -8.937 ML 13 11 6 16 6 13 38 587 1226 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 38 586 1226 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 35 581 1220 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 39 588 1228 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 39 588 1227 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 128 C G - - MP 18 17 6 22 6 19 45 588 1227 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.714 -10.996 -10.031 -7.232 -8.382 -10.176 3.923 -9.297 -10.135 -7.204 -10.255 -9.400 -0.784 -10.548 -2.169 -8.937 ML 19 17 6 22 6 13 37 585 1224 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 37 585 1224 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 34 580 1219 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 38 587 1226 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 39 586 1226 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 127 g c - - MP 24 23 6 28 6 18 43 586 1225 -4.771 -13.631 -0.055 -12.407 -12.687 -13.082 -8.056 -7.611 -8.030 -1.105 -7.020 -8.834 2.746 -7.636 -7.943 2.792 -8.430 -2.784 0.319 -8.179 -1.116 -6.649 ML 25 23 6 28 6 12 37 583 1222 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 37 583 1222 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 34 579 1218 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 40 585 1225 -5.843 -0.135 -4.024 -7.761 -8.537 -8.198 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 40 585 1224 -5.046 -0.069 -8.557 -6.724 -7.830 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 125 G C - - MP 30 29 6 34 6 16 41 584 1223 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -8.467 -7.642 -8.323 -1.203 -7.697 -8.962 1.716 -8.200 -8.435 3.330 -8.801 -5.275 1.008 -8.388 -3.720 -3.598 ML 31 29 6 34 6 12 37 581 1221 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 37 581 1220 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 34 578 1217 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 38 583 1222 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 38 582 1222 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 124 G C - - MP 36 35 6 40 6 14 39 582 1221 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.357 -8.336 -12.485 -5.706 -11.683 -9.517 1.008 -12.031 -9.637 3.780 -9.848 -3.194 -3.124 -9.952 -9.011 -11.351 ML 37 35 6 40 6 11 36 580 1219 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 36 579 1219 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 34 577 1216 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 37 581 1220 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 37 581 1220 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 123 G C - - MP 42 41 6 46 4 12 37 580 1219 -12.884 -13.091 -0.001 -11.505 -9.186 -7.736 -9.208 1.667 -10.672 -10.139 -5.812 -9.573 -9.073 3.240 -9.525 0.876 0.587 -9.401 -7.794 -8.003 ML 43 41 6 46 4 10 36 579 1218 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 35 578 1217 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 34 577 1216 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 36 579 1218 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 36 579 1218 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - - - ML 48 47 6 50 3 10 35 578 1217 -13.795 -0.000 -12.449 -9.405 -5.049 -10.311 1.988 D 49 47 6 50 3 8 34 576 1215 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 35 578 1217 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 51 50 3 53 2 9 34 577 1216 -14.447 -0.000 1.445 -8.677 0.347 -8.593 D 52 50 3 53 2 8 33 576 1215 -8.445 -0.004 IL 53 53 3 53 2 9 35 577 1216 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 8 33 576 1215 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 1 31 50 -13.795 -0.000 -12.449 IL 56 56 2 56 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 101 - u - - - ML 57 56 2 59 3 1 1 31 50 -13.795 -0.076 -4.284 0.681 -0.994 -1.780 0.681 D 58 56 2 59 3 0 0 33 51 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 102 - G - - - ML 60 59 3 62 3 1 1 30 49 -13.719 -0.000 -12.373 -1.923 -5.103 1.859 -3.664 D 61 59 3 62 3 0 0 30 48 -10.977 -0.036 -5.369 IL 62 62 3 62 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 103 - A - - - ML 63 62 3 65 3 1 1 29 48 -1.460 -0.652 -12.449 1.443 -8.240 0.293 -4.261 D 64 62 3 65 3 0 0 27 46 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 29 47 -7.058 -0.013 -9.758 0.000 0.000 0.000 0.000 [ MATL 48 ] 105 - C - - - ML 66 65 3 68 5 1 1 28 46 -12.732 -0.001 -12.547 -12.759 -13.651 -7.803 1.845 -1.740 -3.268 D 67 65 3 68 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 106 122 C G - - MP 69 68 3 73 6 2 2 27 45 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.561 -10.729 -9.949 -1.611 -8.342 -10.144 3.591 -9.236 -10.029 1.381 -10.183 -8.915 -2.769 -10.443 -0.216 -8.826 ML 70 68 3 73 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 107 121 C G - - MP 75 74 6 79 6 2 2 25 43 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.660 -10.751 -10.024 -0.504 -8.427 -10.219 3.838 -9.313 -10.103 -0.938 -10.248 -8.873 -5.151 -10.563 -1.207 -8.916 ML 76 74 6 79 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 108 120 G C - - MP 81 80 6 85 6 2 2 23 41 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.628 -8.250 -13.965 -5.728 -13.248 -9.412 -7.548 -13.412 -9.619 3.995 -9.811 -6.183 -7.915 -9.880 -9.998 -13.064 ML 82 80 6 85 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 109 119 G C - - MP 87 86 6 91 6 2 2 21 39 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -9.588 -2.590 -9.735 0.563 -11.610 -11.648 -6.911 -9.874 -9.364 3.584 -9.961 1.173 -6.963 -10.529 -8.820 -3.618 ML 88 86 6 91 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 110 118 G C - - MP 93 92 6 97 4 2 2 19 37 -12.884 -13.091 -0.001 -11.505 -11.537 -8.252 -13.514 -2.107 -13.211 -9.443 -7.550 -13.110 -9.615 3.976 -9.818 -6.168 -7.903 -9.900 -9.982 -12.451 ML 94 92 6 97 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 111 - U - - - ML 99 98 6 101 3 1 1 16 34 -13.795 -0.000 -12.449 -10.840 -9.595 -12.243 1.999 D 100 98 6 101 3 0 0 19 37 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 112 - U - - - ML 102 101 3 104 3 1 1 15 33 -13.795 -0.000 -12.449 -10.840 -9.595 -12.243 1.999 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 113 - C - - - ML 105 104 3 107 3 1 1 13 32 -13.795 -0.000 -12.449 -9.766 1.998 -10.365 -8.535 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 114 - A - - - ML 108 107 3 110 3 1 1 12 31 -13.795 -0.000 -12.449 1.561 -8.658 0.063 -8.575 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 115 - A - - - ML 111 110 3 113 3 1 1 11 29 -13.795 -0.000 -12.449 1.998 -9.809 -9.044 -9.152 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 116 - A - - - ML 114 113 3 116 3 1 1 9 27 -13.795 -0.000 -12.449 1.478 -3.321 -2.230 -0.151 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 117 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -9.173 -4.443 -10.043 1.982 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 1 15 554 1193 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 176 1 15 554 1193 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 3 27 46 -0.001 -11.807 -11.214 -11.854 [ MATP 15 ] 12 32 G U - - MP 124 123 1 128 6 2 5 27 46 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -9.766 -8.356 -9.979 -2.784 -12.087 -12.394 -7.499 -10.019 -9.467 2.734 -10.108 3.198 -7.446 -11.083 -9.359 -8.579 ML 125 123 1 128 6 1 2 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 2 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 2 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 2 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 31 g c - - MP 130 129 6 134 6 2 5 25 44 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.671 -10.854 -10.016 -7.095 -8.387 -10.174 2.102 -9.292 -10.103 2.896 -10.236 -9.126 2.080 -10.524 -6.087 -8.913 ML 131 129 6 134 6 1 2 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 2 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 2 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 2 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 30 G C - - MP 136 135 6 140 6 2 5 23 42 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -9.393 -8.026 -9.248 0.086 -9.227 -9.634 -0.641 -9.369 -9.210 3.321 -9.516 -5.644 2.089 -9.249 -6.697 -8.122 ML 137 135 6 140 6 1 2 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 2 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 2 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 29 u u - - MP 142 141 6 146 4 2 4 21 40 -12.884 -13.091 -0.001 -11.505 -10.714 -10.996 -10.031 -7.232 -8.382 -10.176 2.217 -9.297 -10.135 -7.204 -10.255 -9.399 -0.133 -10.548 1.376 2.967 ML 143 141 6 146 4 1 1 26 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 2 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 148 147 6 150 3 1 3 19 37 -13.795 -0.000 -12.449 1.998 -9.809 -9.044 -9.152 D 149 147 6 150 3 0 0 21 40 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - G - - - ML 151 150 3 153 3 1 2 17 36 -13.795 -0.000 -12.449 -4.846 -10.117 1.986 -9.096 D 152 150 3 153 3 0 0 20 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - C - - - ML 154 153 3 156 3 1 1 16 35 -13.795 -0.857 -1.159 -2.344 1.113 -0.940 0.163 D 155 153 3 156 3 0 0 19 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - C - - - ML 157 156 3 159 3 1 1 15 34 -0.493 -1.791 -11.593 -5.752 1.635 -3.801 -0.313 D 158 156 3 159 3 0 0 13 32 -14.060 -0.004 -8.452 IL 159 159 3 159 3 1 1 15 33 -3.248 -0.162 -10.017 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 160 159 3 162 3 1 1 13 32 -13.795 -0.000 -12.449 -8.340 -10.112 1.998 -9.099 D 161 159 3 162 3 0 0 17 35 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 163 162 3 165 3 1 1 12 30 -13.795 -0.000 -12.449 -8.340 -10.112 1.998 -9.099 D 164 162 3 165 3 0 0 15 34 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 166 165 3 168 3 1 1 10 29 -3.148 -0.504 -2.458 0.164 -0.258 -4.730 1.004 D 167 165 3 168 3 0 0 9 27 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 10 29 -5.433 -0.039 -8.133 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - U - - - ML 169 168 3 171 3 1 1 9 28 -13.506 -0.000 -12.160 -3.584 -0.793 -2.218 1.644 D 170 168 3 171 3 0 0 9 27 -12.769 -0.010 -7.161 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.998 -9.809 -9.044 -9.152 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 176 122 1 177 3 0 0 537 1176 -13.795 -0.000 -12.449 IL 177 177 2 177 3 1 1 539 1178 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - G - - - ML 178 177 2 180 5 1 1 537 1176 -12.732 -0.001 -12.547 -12.759 -13.651 0.171 -2.638 1.042 -0.611 D 179 177 2 180 5 0 0 534 1173 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 537 1176 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 100 c g - - MP 181 180 3 185 6 2 2 536 1175 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -7.996 -7.687 -7.995 0.142 -4.611 -8.837 2.801 -4.778 -7.859 1.069 -8.371 1.858 0.884 -8.175 -4.338 -2.286 ML 182 180 3 185 6 1 1 533 1173 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 533 1172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 527 1166 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 535 1174 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 535 1174 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 99 g c - - MP 187 186 6 191 6 2 2 534 1173 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -7.780 -6.428 -7.607 1.790 -8.688 -8.222 1.990 -8.265 -8.019 2.777 -8.279 0.151 -0.899 -7.478 -5.782 -6.562 ML 188 186 6 191 6 1 1 532 1171 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 531 1170 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 525 1164 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 533 1172 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 533 1172 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 98 G C - - MP 193 192 6 197 6 2 2 532 1171 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.439 -8.262 -13.076 -1.445 -12.928 -9.480 -0.386 -12.746 -9.613 3.891 -9.826 -6.160 -7.830 -9.923 -9.832 -11.930 ML 194 192 6 197 6 1 1 530 1169 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 529 1168 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 524 1163 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 531 1170 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 531 1170 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 97 G C - - MP 199 198 6 203 6 2 2 530 1169 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.410 -8.269 -12.949 -5.655 -12.779 -9.493 1.329 -12.621 -9.614 3.718 -9.830 -1.760 -7.791 -9.932 -9.748 -11.787 ML 200 198 6 203 6 1 1 528 1167 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 526 1165 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 523 1162 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 529 1168 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 529 1168 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 38 96 a u - - MP 205 204 6 209 4 2 2 528 1167 -12.884 -13.091 -0.001 -11.505 -9.609 -8.267 -9.760 2.749 -11.592 -12.223 2.052 -9.856 -9.399 2.326 -10.029 -3.406 -7.052 -10.775 -8.870 -8.400 ML 206 204 6 209 4 1 1 526 1166 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 523 1163 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 522 1161 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 528 1167 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 527 1166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - C - - - ML 211 210 6 213 3 1 1 526 1165 -13.795 -0.000 -12.449 -9.186 1.709 -9.894 -0.456 D 212 210 6 213 3 0 0 519 1158 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 526 1165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - U - - - ML 214 213 3 216 3 1 1 525 1164 -13.795 -0.000 -12.449 -10.840 -9.595 -12.243 1.999 D 215 213 3 216 3 0 0 516 1155 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 525 1164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - u - - - ML 217 216 3 219 3 1 1 524 1163 -13.795 -0.000 -12.449 0.013 -0.014 -0.015 0.015 D 218 216 3 219 3 0 0 510 1150 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 523 1163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - u - - - ML 220 219 3 222 3 1 1 523 1162 -13.795 -0.000 -12.449 0.013 -0.014 -0.015 0.015 D 221 219 3 222 3 0 0 502 1141 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 522 1161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - u - - - ML 223 222 3 225 3 1 1 522 1161 -13.795 -0.000 -12.449 0.013 -0.014 -0.015 0.015 D 224 222 3 225 3 0 0 485 1124 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 520 1159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - G - - - ML 226 225 3 228 3 1 1 521 1160 -1.679 -0.540 -12.449 -8.340 -10.112 1.998 -9.099 D 227 225 3 228 3 0 0 412 1051 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 561 1200 -0.042 -5.139 -14.668 0.000 0.000 0.000 0.000 [ MATL 42 ] 95 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.917 -4.330 -7.453 -2.561 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-His ACC arch-His-r2-033017 LENG 73 MAXL 582 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:44:23 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-His-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-His-r2-033017.sto NSEQ 214 EFFN 5.717682 CKSUM 2070213119 STATS LOCAL MSV -8.0506 0.71890 STATS LOCAL VITERBI -9.2822 0.71890 STATS LOCAL FORWARD -3.0342 0.71890 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65183 1.28022 1.15660 1.53354 1.38629 1.38629 1.38629 1.38629 0.04339 3.45936 4.50868 0.59577 0.80104 0.00000 * 1 2.79236 3.42307 0.17167 2.75118 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 2 3.75499 0.19502 3.59810 2.06824 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 3 3.83672 0.17011 3.68502 2.20941 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 4 2.14127 1.12365 1.04671 1.57836 5 g - - ( 1.38629 1.38629 1.38629 1.38629 0.05199 3.22758 4.50868 0.48544 0.95562 1.09861 0.40547 5 2.03469 1.62864 0.69588 1.74613 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 6 2.40739 2.22467 0.30112 2.78292 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 7 1.57808 2.63468 0.50332 2.14245 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 8 3.48922 3.20341 4.01905 0.09334 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 9 0.47854 3.18926 1.26391 2.87237 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 10 2.40917 3.64985 0.16072 3.42402 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 11 2.37275 1.28690 1.01493 1.31594 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 12 1.91673 2.14694 0.63800 1.57156 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 13 3.05724 1.12155 2.88906 0.55935 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 14 0.04807 4.35575 3.99358 4.15620 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 15 3.50182 4.61721 0.05715 4.16540 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 16 1.86641 0.89711 1.99159 1.20032 18 c - - _ 1.38629 1.38629 1.38629 1.38629 0.45273 4.50868 1.04102 1.46634 0.26236 1.09861 0.40547 17 2.15499 0.57055 2.66278 1.38980 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.67243 0.74909 4.09000 0.16666 1.87395 0.06051 2.83502 18 3.75778 4.74843 0.04705 4.27182 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 19 3.75778 4.74843 0.04705 4.27182 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 20 1.29466 1.54371 2.39550 0.86442 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.28390 2.33116 1.89730 0.21302 1.65099 1.09861 0.40547 21 2.16273 1.81904 2.45690 0.45082 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02591 4.35906 4.35906 1.46634 0.26236 0.13703 2.05527 22 0.04807 4.35575 3.99358 4.15620 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 23 2.04588 3.05124 0.79003 0.99533 29 g - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 24 1.69383 0.70261 1.99007 1.69168 30 c - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 25 1.44656 1.07745 1.18864 2.12426 31 c - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 26 3.60485 0.79759 3.42510 0.71366 32 u - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 27 1.26349 2.23480 0.91981 1.55247 33 g - - , 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 28 1.96967 1.08516 1.25575 1.43638 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 29 1.57798 1.63376 0.75517 2.05194 35 g - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 30 2.60147 2.92839 0.17750 3.35274 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 31 2.40431 2.12636 0.31098 2.85294 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 32 1.24832 1.54964 0.95874 2.14291 38 g - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 33 2.94790 0.32597 3.59583 1.61805 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 34 3.69140 3.49191 4.23551 0.07241 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 35 1.27590 1.51344 1.53262 1.25631 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 36 1.27590 1.51344 1.53262 1.25631 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 37 1.27590 1.51344 1.53262 1.25631 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 38 3.75778 4.74844 0.04705 4.27182 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.30195 1.38784 4.50868 3.55157 0.02910 1.09861 0.40547 39 0.15568 3.15788 3.27067 2.75398 95 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 40 2.38399 1.05207 1.45410 1.12395 96 c - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 41 3.10077 0.35881 2.04367 2.06414 97 C - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 42 3.58210 0.20255 2.82251 2.34259 98 C - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 43 2.27749 0.88639 1.52984 1.31398 99 c - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 44 1.63879 1.69656 0.98834 1.38517 100 g - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 45 1.05452 1.79398 2.02942 1.03865 101 u - - , 1.38629 1.38629 1.38629 1.38629 0.06307 4.50868 2.99364 1.46634 0.26236 1.09861 0.40547 46 2.29761 3.36643 0.20837 2.93584 102 G - - , 1.38629 1.38629 1.38629 1.38629 0.02319 4.46880 4.46880 1.46634 0.26236 0.36437 1.18625 47 0.50346 3.00896 1.30660 2.58382 103 A - - , 1.38629 1.38629 1.38629 1.38629 0.35650 1.24179 4.50868 0.07458 2.63295 1.09861 0.40547 48 3.00715 0.22267 2.79906 2.41551 105 C - - , 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 49 2.46950 0.61747 1.71653 1.62770 106 C - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 50 2.55356 0.37856 2.44186 1.89479 107 C - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 51 3.33940 4.30142 0.06523 4.25897 108 G - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 52 1.76099 2.77163 0.37085 2.58475 109 G - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 53 3.10730 4.23194 0.07775 4.16316 110 G - - < 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 54 3.69140 3.49191 4.23551 0.07241 111 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 55 3.69140 3.49191 4.23551 0.07241 112 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 56 4.11750 0.05882 4.60059 3.48059 113 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 57 0.40377 3.21791 1.43437 2.92061 114 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 58 0.04807 4.35575 3.99358 4.15620 115 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 59 0.59035 2.30007 2.21039 1.44411 116 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 60 3.41882 3.09578 3.94468 0.10242 117 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 61 4.28914 0.09383 4.09124 2.82810 118 C - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 62 2.87326 0.51172 2.57732 1.31661 119 C - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 63 4.36207 0.08054 4.16160 3.01499 120 C - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 64 2.25028 2.57608 0.32044 2.37806 121 G - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 65 1.99380 1.81103 0.51966 2.24794 122 G - - > 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 66 2.31809 0.64466 2.44483 1.23803 123 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 67 3.01700 0.34115 2.13096 2.10885 124 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 68 1.93723 0.76066 1.51244 1.78280 125 c - - ) 1.38629 1.38629 1.38629 1.38629 0.05199 3.22758 4.50868 0.48544 0.95562 1.09861 0.40547 69 1.82438 1.13013 1.00644 1.89597 127 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 70 2.50762 3.83599 0.13965 3.60091 128 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 71 2.25987 3.75367 0.17142 3.51546 129 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02227 4.50868 4.50868 1.46634 0.26236 1.09861 0.40547 72 2.86870 0.19506 3.25754 2.50153 130 C - - ) 1.38629 1.38629 1.38629 1.38629 0.05920 3.06893 4.50868 1.16610 0.37336 1.09861 0.40547 73 2.05556 0.36585 2.86430 2.10906 134 C - - : 1.38629 1.38629 1.38629 1.38629 0.21290 1.65149 * 1.14990 0.38077 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Ile2 ACC arch-Ile2-r2-033017 STATES 239 NODES 64 CLEN 75 W 559 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:55:26 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ile2-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Ile2-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile2-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile2-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile2-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile2-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ile2-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 166 EFFN 166.000000 CKSUM 2534905967 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.3080 0.71893 ECMLC 0.62341 -8.23202 2.08997 1600000 747817 0.001605 ECMGC 0.34737 -51.68429 -38.04605 1600000 45657 0.008761 ECMLI 0.62561 -7.91595 2.28895 1600000 710979 0.001688 ECMGI 0.36334 -47.30042 -34.44662 1600000 42691 0.009370 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 559 1149 -12.317 -13.563 -0.002 -10.016 IL 1 1 2 1 4 16 42 561 1151 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 44 561 1151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 125 - A - - MR 3 2 3 5 5 22 50 560 1150 -2.192 -0.357 -12.185 -12.397 -13.289 1.998 -9.467 -8.704 -8.816 D 4 2 3 5 5 12 39 556 1147 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 21 49 561 1152 -0.599 -1.563 -12.096 -10.263 -11.369 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 121 G C - - MP 6 5 3 10 6 23 50 558 1149 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -11.270 -7.898 -13.577 -5.373 -12.889 -9.062 -7.195 -13.036 -9.267 3.994 -9.459 -5.830 -7.561 -9.529 -9.643 -12.661 ML 7 5 3 10 6 14 41 556 1146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 40 555 1145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 37 550 1140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 42 557 1147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 42 557 1147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 120 G C - - MP 12 11 6 16 6 22 48 556 1147 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -11.233 -7.920 -13.196 -5.384 -12.305 -9.077 -0.832 -12.636 -9.274 3.943 -9.467 -5.851 -7.415 -9.541 -9.321 -12.216 ML 13 11 6 16 6 14 40 554 1144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 40 553 1144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 36 548 1138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 41 555 1146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 42 555 1145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 119 G C - - MP 18 17 6 22 6 20 47 554 1145 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -11.233 -7.920 -13.196 -5.384 -12.305 -9.077 -0.832 -12.636 -9.274 3.943 -9.467 -5.851 -7.415 -9.541 -9.321 -12.216 ML 19 17 6 22 6 13 40 552 1142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 40 551 1142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 36 547 1137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 41 553 1144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 41 553 1143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 118 C G - - MP 24 23 6 28 6 18 45 552 1143 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -10.283 -10.347 -9.657 -2.274 -8.069 -9.860 3.671 -8.950 -9.731 1.452 -9.881 -8.434 -4.788 -10.198 -1.932 -8.545 ML 25 23 6 28 6 13 40 550 1140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 39 550 1140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 36 546 1136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 14 41 551 1142 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 41 551 1142 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 117 C G - - MP 30 29 6 34 6 16 43 550 1141 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -9.985 -9.379 -9.612 -1.855 -8.394 -10.169 3.872 -9.057 -9.542 -1.444 -9.840 -1.989 -5.044 -10.297 -1.273 -8.421 ML 31 29 6 34 6 12 39 548 1139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 39 548 1138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 36 545 1135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 40 549 1140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 40 549 1140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 116 C G - - MP 36 35 6 40 6 14 41 548 1139 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -10.350 -10.631 -9.668 -6.867 -3.390 -9.812 3.601 -8.934 -9.771 -6.839 -9.891 -9.034 1.872 -10.184 -3.695 -8.573 ML 37 35 6 40 6 12 38 547 1137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 38 546 1136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 35 544 1134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 39 548 1138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 39 547 1138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 115 G C - - MP 42 41 6 46 4 12 39 546 1137 -12.521 -12.728 -0.001 -11.142 -7.722 -6.333 -7.571 0.628 -8.720 -8.168 -1.861 -8.212 -7.902 3.331 -8.179 -1.561 1.890 -7.448 -5.803 -6.514 ML 43 41 6 46 4 11 37 545 1136 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 36 545 1135 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 35 543 1134 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 38 546 1136 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 38 546 1136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 10 37 544 1135 -13.432 -0.000 -12.086 -8.717 -4.661 -9.575 1.984 D 49 47 6 50 3 8 35 543 1133 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 37 545 1135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 9 36 543 1134 -14.083 -0.000 1.949 -8.659 -8.431 -2.901 D 52 50 3 53 2 8 35 542 1133 -8.445 -0.004 IL 53 53 3 53 2 9 36 544 1134 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 8 35 542 1133 [ BEGR 45 ] - - - - - - S 55 54 1 56 3 0 0 32 51 -13.432 -0.000 -12.086 IL 56 56 2 56 3 1 1 39 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 93 - U - - - ML 57 56 2 59 3 1 1 32 51 -13.432 -0.000 -12.086 -1.621 0.333 -3.092 1.200 D 58 56 2 59 3 0 0 34 52 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 94 - G - - - ML 60 59 3 62 3 1 1 31 50 -13.432 -0.000 -12.086 -3.054 -3.355 1.906 -4.893 D 61 59 3 62 3 0 0 33 51 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 95 - G - - - ML 63 62 3 65 3 1 1 30 49 -13.432 -0.000 -12.086 -0.758 -9.119 1.767 -8.374 D 64 62 3 65 3 0 0 32 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 96 - U - - - ML 66 65 3 68 3 1 1 29 47 -13.432 -0.000 -12.086 -3.582 -1.413 -1.225 1.638 D 67 65 3 68 3 0 0 30 49 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 97 - C - - - ML 69 68 3 71 5 1 1 28 46 -12.370 -0.001 -12.185 -12.397 -13.289 -9.299 1.998 -9.866 -8.127 D 70 68 3 71 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 98 114 G C - - MP 72 71 3 76 6 2 2 27 45 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -8.525 -7.118 -8.484 2.147 -9.829 -9.361 1.465 -8.934 -8.519 3.072 -8.929 -1.578 -5.174 -8.593 -6.942 -7.326 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 99 113 c g - - MP 78 77 6 82 6 2 2 25 43 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -7.656 -7.323 -7.651 1.455 -6.554 -8.484 2.319 -7.197 -7.525 2.162 -8.032 -4.898 1.397 -7.824 -0.900 -0.895 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 100 112 G C - - MP 84 83 6 88 6 2 2 23 41 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -9.675 -8.793 -9.328 0.409 -8.357 -9.752 1.410 -8.973 -9.349 3.062 -9.608 -6.436 -4.895 -9.677 1.848 -8.190 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 101 111 G C - - MP 90 89 6 94 6 2 2 21 39 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -11.260 -3.341 -13.505 -5.372 -12.818 -9.065 -1.275 -12.973 -9.267 3.948 -9.460 -5.831 -7.545 -9.531 -9.607 -12.570 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 102 110 G C - - MP 96 95 6 100 4 2 2 19 37 -12.521 -12.728 -0.001 -11.142 -11.270 -7.898 -13.577 -5.373 -12.889 -9.062 -7.195 -13.036 -9.267 3.994 -9.459 -5.830 -7.561 -9.529 -9.643 -12.661 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 103 - U - - - ML 102 101 6 104 3 1 1 16 35 -13.432 -0.000 -12.086 -3.168 -7.178 -8.183 1.955 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 104 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.432 -0.000 -12.086 -10.377 -9.186 -11.719 1.999 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 105 - C - - - ML 108 107 3 110 3 1 1 14 32 -13.432 -0.000 -12.086 -9.299 1.998 -9.866 -8.127 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 106 - A - - - ML 111 110 3 113 3 1 1 12 31 -13.432 -0.000 -12.086 1.207 -8.316 0.752 -8.223 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 107 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.432 -0.000 -12.086 1.998 -9.467 -8.704 -8.816 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 108 - A - - - ML 117 116 3 119 3 1 1 9 28 -13.432 -0.000 -12.086 1.942 -8.841 -2.722 -8.467 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 109 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -6.241 -1.619 -1.871 1.760 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 16 520 1111 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 182 0 16 520 1111 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 1 28 47 -0.006 -8.241 -10.858 -11.498 [ MATP 15 ] 10 28 G C - - MP 127 126 1 131 6 2 3 28 47 -13.334 -13.274 -0.001 -12.050 -12.330 -12.725 -10.837 -7.896 -12.029 -1.182 -12.632 -9.211 -7.147 -11.897 -9.236 3.899 -9.480 -1.974 -1.457 -9.610 -9.497 -10.780 ML 128 126 1 131 6 1 1 28 46 -7.038 -7.384 -0.612 -1.793 -7.234 -4.763 -0.228 -1.172 1.025 -0.583 MR 129 126 1 131 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G - - MP 133 132 6 137 6 2 3 26 45 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -12.461 -12.705 -8.344 -10.942 -6.581 -7.836 3.997 -12.753 -13.510 -10.332 -7.862 -12.272 -8.569 -13.107 -9.630 -12.182 ML 134 132 6 137 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 U A - - MP 139 138 6 143 6 2 3 24 43 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -9.822 -8.924 -9.609 -0.737 -8.759 -10.507 -4.456 -9.180 -9.437 -5.496 -9.835 -6.351 3.935 -10.435 -6.435 -8.365 ML 140 138 6 143 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 C G - - MP 145 144 6 149 4 2 3 22 40 -12.521 -12.728 -0.001 -11.142 -10.347 -10.627 -9.666 -6.862 -8.018 -9.812 3.128 -8.933 -9.770 -6.832 -9.890 -9.026 1.151 -10.182 2.258 -2.190 ML 146 144 6 149 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 26 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 2 19 38 -13.432 -0.000 -12.086 1.998 -9.467 -8.704 -8.816 D 152 150 6 153 3 0 0 22 40 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 2 18 37 -13.432 -0.000 -12.086 -7.986 -9.759 1.997 -8.747 D 155 153 3 156 3 0 0 20 39 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 17 36 -13.432 -0.038 -5.271 -4.514 1.153 -3.858 0.734 D 158 156 3 159 3 0 0 19 38 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 160 159 3 162 3 1 1 16 34 -13.395 -0.020 -6.190 -8.459 1.843 -8.954 -1.299 D 161 159 3 162 3 0 0 16 35 -9.698 -5.211 -0.041 IL 162 162 3 162 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - u - - - ML 163 162 3 165 3 1 1 15 33 -13.375 -0.000 -12.029 0.416 -0.312 -6.116 0.884 D 164 162 3 165 3 0 0 15 33 -10.251 -0.060 -4.642 IL 165 165 3 165 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 166 165 3 168 3 1 1 13 32 -13.432 -0.000 -12.086 -7.986 -9.759 1.997 -8.747 D 167 165 3 168 3 0 0 17 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - - - ML 169 168 3 171 3 1 1 12 31 -13.432 -0.000 -12.086 -7.986 -9.759 1.997 -8.747 D 170 168 3 171 3 0 0 15 34 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - U - - - ML 172 171 3 174 3 1 1 11 29 -3.429 -0.689 -1.800 -8.162 -3.093 -8.960 1.955 D 173 171 3 174 3 0 0 9 27 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 11 29 -4.838 -0.059 -7.539 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - U - - - ML 175 174 3 177 3 1 1 10 28 -12.945 -0.001 -11.599 -1.947 0.157 -3.344 1.338 D 176 174 3 177 3 0 0 9 27 -13.062 -0.008 -7.453 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - A - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 1.924 -8.693 -2.327 -8.381 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 182 125 1 183 3 0 0 503 1093 -13.432 -0.000 -12.086 IL 183 183 2 183 3 1 1 504 1094 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - G - - - ML 184 183 2 186 5 1 1 503 1093 -12.370 -0.001 -12.185 -12.397 -13.289 -2.137 -2.088 1.819 -6.710 D 185 183 2 186 5 0 0 500 1090 -4.959 -0.803 -4.221 -2.596 -2.508 IL 186 186 3 186 5 1 1 502 1093 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 92 C G - - MP 187 186 3 191 6 2 2 502 1092 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -10.173 -10.337 -9.570 0.446 -7.966 -9.771 3.760 -8.860 -9.647 -2.477 -9.806 -8.509 -0.279 -10.058 -3.891 -8.442 ML 188 186 3 191 6 1 1 499 1089 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 498 1088 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 492 1083 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 500 1091 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 500 1091 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 91 C G - - MP 193 192 6 197 6 2 2 500 1090 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -9.378 -9.295 -9.051 -5.242 -7.618 -9.478 3.291 -8.429 -9.036 0.605 -9.341 -7.084 2.089 -4.113 -1.619 -7.795 ML 194 192 6 197 6 1 1 497 1087 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 496 1086 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 491 1081 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 498 1089 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 498 1089 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 90 C G - - MP 199 198 6 203 6 2 2 498 1088 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -10.162 -2.031 -9.614 -3.214 -8.107 -9.900 3.865 -8.943 -9.650 -1.829 -9.844 -7.892 -0.397 -10.171 -5.798 -8.475 ML 200 198 6 203 6 1 1 495 1085 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 494 1084 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 489 1080 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 496 1087 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 496 1087 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 89 G C - - MP 205 204 6 209 6 2 2 496 1086 -13.339 -13.278 -0.001 -12.054 -12.334 -12.729 -11.254 -7.908 -13.403 -5.378 -12.609 -9.068 -2.146 -12.852 -9.270 3.974 -9.463 -5.839 -7.496 -9.534 -9.496 -12.456 ML 206 204 6 209 6 1 1 493 1084 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 492 1082 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 488 1078 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 495 1085 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 494 1085 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 88 G C - - MP 211 210 6 215 4 2 2 494 1084 -12.521 -12.728 -0.001 -11.142 -11.180 -7.900 -13.141 -2.134 -12.856 -9.093 -7.197 -12.742 -9.263 3.975 -9.466 -5.815 -7.549 -9.549 -9.628 -12.072 ML 212 210 6 215 4 1 1 492 1082 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 489 1079 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 214 210 6 215 4 0 0 487 1077 -4.568 -4.250 -2.265 -0.520 IL 215 215 5 215 4 1 1 493 1083 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 493 1083 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - C - - - ML 217 216 6 219 3 1 1 492 1082 -13.432 -0.000 -12.086 -9.299 1.998 -9.866 -8.127 D 218 216 6 219 3 0 0 485 1075 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 492 1082 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - - - ML 220 219 3 222 3 1 1 491 1081 -13.432 -0.000 -12.086 -10.377 -9.186 -11.719 1.999 D 221 219 3 222 3 0 0 481 1072 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 490 1081 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - u - - - ML 223 222 3 225 3 1 1 490 1080 -13.432 -0.000 -12.086 0.017 -0.017 -0.019 0.019 D 224 222 3 225 3 0 0 477 1067 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 489 1079 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - u - - - ML 226 225 3 228 3 1 1 489 1079 -13.432 -0.000 -12.086 0.017 -0.017 -0.019 0.019 D 227 225 3 228 3 0 0 469 1059 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 487 1078 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - u - - - ML 229 228 3 231 3 1 1 488 1078 -13.432 -0.000 -12.086 0.017 -0.017 -0.019 0.019 D 230 228 3 231 3 0 0 453 1043 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 485 1076 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - A - - - ML 232 231 3 234 3 1 1 487 1077 -1.454 -0.656 -12.086 1.998 -9.467 -8.704 -8.816 D 233 231 3 234 3 0 0 381 971 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 518 1108 -0.045 -5.027 -14.419 0.000 0.000 0.000 0.000 [ MATL 43 ] 87 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.998 -9.467 -8.704 -8.816 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Ile2 ACC arch-Ile2-r2-033017 LENG 75 MAXL 541 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:55:26 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ile2-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Ile2-r2-033017.sto NSEQ 166 EFFN 3.118073 CKSUM 2534905967 STATS LOCAL MSV -8.3734 0.71893 STATS LOCAL VITERBI -9.2148 0.71893 STATS LOCAL FORWARD -3.0577 0.71893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54437 1.28861 1.20614 1.55330 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 0.00000 * 1 2.79438 3.56150 0.12779 3.49283 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 2 2.53038 2.85372 0.20603 3.01725 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 3 2.53228 2.85517 0.20558 3.02002 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 4 2.32586 0.68006 1.63765 1.60307 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 5 2.46170 0.49376 2.13025 1.68429 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 6 2.72881 0.56684 2.49773 1.25487 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 7 1.76494 2.06633 0.67155 1.65425 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 8 2.80494 2.66516 3.32751 0.18150 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 9 0.18308 3.09707 2.95451 2.65910 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 10 2.27436 3.03793 0.23750 2.80334 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 11 3.55807 0.16771 3.37119 2.39082 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 12 2.65676 1.94967 2.62242 0.33565 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 13 2.43098 0.84692 2.20484 0.98605 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 14 0.10746 3.58093 3.27291 3.32039 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 15 3.04277 3.96297 0.10080 3.53429 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 16 1.95255 0.91895 2.47080 0.98180 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05062 4.11141 3.41185 1.46634 0.26236 1.09861 0.40547 17 2.60463 0.32480 3.20172 1.81582 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04285 4.09468 3.67742 1.46634 0.26236 1.38951 0.28661 18 1.20719 1.56409 2.20160 0.96480 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03419 4.08601 4.08601 1.46634 0.26236 0.58238 0.81772 19 3.04277 3.96297 0.10080 3.53429 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 20 3.04277 3.96297 0.10080 3.53429 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 21 2.65356 2.43578 3.17145 0.22298 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32610 2.57231 1.59993 0.38488 1.14110 1.09861 0.40547 22 1.67643 1.43780 2.22554 0.76035 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04107 3.90620 3.90620 1.46634 0.26236 0.15040 1.96873 23 0.20749 3.10173 2.48775 2.82497 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 24 1.56091 2.37563 0.54193 2.15869 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 25 0.37679 2.82027 1.78637 2.44431 26 A - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 26 2.66594 3.52855 0.14550 3.30959 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03533 4.11141 3.99938 1.46634 0.26236 1.09861 0.40547 27 2.98437 0.28500 2.85061 1.96896 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03338 4.10947 4.10947 1.46634 0.26236 1.02534 0.44422 28 1.92760 2.53223 0.37863 2.40547 29 G - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 29 2.15769 0.57956 2.17820 1.55581 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 30 2.22444 0.88423 1.76227 1.18031 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 31 2.46576 0.46893 2.20477 1.71978 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 32 2.67820 3.21363 0.15861 3.27617 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 33 2.68038 3.53006 0.13871 3.45212 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 34 3.25827 0.13444 3.82800 2.72441 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 35 2.93520 2.84503 3.46370 0.15381 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 36 1.26140 1.53537 1.55671 1.23601 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 37 1.26140 1.53537 1.55671 1.23601 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 38 1.26140 1.53537 1.55671 1.23601 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 39 0.10746 3.58093 3.27291 3.32039 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.31296 1.37698 4.11141 3.46323 0.03183 1.09861 0.40547 40 0.10746 3.58093 3.27291 3.32039 87 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 41 3.64273 0.16500 3.36891 2.39144 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 42 3.48582 0.18621 3.06661 2.37845 89 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 43 1.93838 2.32640 0.42009 2.28841 90 G - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 44 1.36970 1.89694 0.77721 1.99435 91 g - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 45 1.78514 2.34393 0.51358 1.98104 92 G - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 46 1.69382 1.34786 2.27588 0.79036 93 u - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 47 2.25481 2.97888 0.25086 2.71622 94 G - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 48 1.74830 3.05564 0.34318 2.66893 95 G - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 49 1.90206 1.88544 2.10025 0.55069 96 U - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 50 3.25827 0.13444 3.82800 2.72441 97 C - - , 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 51 1.51279 1.82199 0.71505 2.04925 98 g - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 52 1.71822 1.28876 1.27729 1.32347 99 g - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 53 1.83051 1.54264 0.93693 1.45233 100 g - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 54 2.47433 2.98971 0.19984 3.06583 101 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 55 2.80767 3.57938 0.12548 3.51710 102 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 56 2.37679 2.51613 3.01423 0.25193 103 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 57 2.93520 2.84503 3.46370 0.15381 104 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 58 3.25827 0.13444 3.82800 2.72441 105 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 59 0.72448 2.61182 1.09731 2.22329 106 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 60 0.10746 3.58093 3.27291 3.32039 107 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 61 0.18695 3.17149 2.60874 2.90145 108 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 62 2.09271 1.97689 2.33266 0.44455 109 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 63 3.69924 0.15021 3.42105 2.50037 110 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 64 3.28509 0.23056 2.84246 2.20555 111 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 65 1.95152 1.02549 1.20135 1.61679 112 c - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 66 1.57062 1.39246 1.13421 1.50532 113 g - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 67 2.29170 0.81268 1.68673 1.30890 114 c - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 68 1.81625 0.76107 1.89228 1.51654 115 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 69 1.40482 2.66419 0.50717 2.49209 116 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 70 1.96985 2.33566 0.42753 2.19231 117 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 71 1.87317 1.74746 0.59917 2.09655 118 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 72 3.23846 0.23779 2.71565 2.24203 119 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 73 3.23251 0.23841 2.71374 2.24078 120 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03332 4.11141 4.11141 1.46634 0.26236 1.09861 0.40547 74 3.65326 0.15326 3.39900 2.49161 121 C - - ) 1.38629 1.38629 1.38629 1.38629 0.19195 1.84347 4.11141 1.12700 0.39157 1.09861 0.40547 75 0.10746 3.58093 3.27291 3.32039 125 A - - : 1.38629 1.38629 1.38629 1.38629 0.01680 4.09489 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Ile ACC arch-Ile-r2-033017 STATES 239 NODES 64 CLEN 75 W 555 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:50:04 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ile-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Ile-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ile-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ile-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 214 EFFN 214.000000 CKSUM 894548418 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.9544 0.71891 ECMLC 0.62008 -8.28480 2.06488 1600000 735034 0.001633 ECMGC 0.33054 -53.23159 -39.02438 1600000 43803 0.009132 ECMLI 0.64759 -7.49250 2.35095 1600000 704011 0.001705 ECMGI 0.36055 -48.25962 -35.42819 1600000 40859 0.009790 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 555 1145 -12.680 -13.925 -0.001 -10.379 IL 1 1 2 1 4 17 43 557 1147 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 44 558 1147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 127 - A - - MR 3 2 3 5 5 23 51 557 1146 -1.815 -0.483 -12.547 -12.759 -13.651 1.998 -9.809 -9.044 -9.152 D 4 2 3 5 5 13 39 553 1142 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 22 50 558 1147 -0.594 -1.571 -12.827 -10.995 -12.101 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 123 G C - - MP 6 5 3 10 6 24 51 555 1144 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.831 -8.103 -11.451 -0.006 -2.331 -4.210 -6.609 -11.691 -9.486 3.832 -9.689 -5.978 -1.073 -9.609 -8.806 -10.418 ML 7 5 3 10 6 15 41 552 1141 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 41 552 1141 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 37 546 1135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 42 554 1143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 42 554 1143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 122 G C - - MP 12 11 6 16 6 23 49 553 1142 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.593 -8.271 -13.591 -5.738 -12.680 -9.427 -0.792 -13.021 -9.626 3.943 -9.818 -6.203 -7.774 -9.892 -9.687 -12.623 ML 13 11 6 16 6 15 41 550 1139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 40 550 1139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 37 545 1134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 42 552 1141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 42 552 1141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 121 G C - - MP 18 17 6 22 6 21 47 551 1140 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.527 -8.253 -13.471 -1.843 -13.207 -9.447 -7.550 -13.079 -9.615 3.972 -9.818 -6.166 -7.901 -9.902 -9.980 -12.395 ML 19 17 6 22 6 15 40 548 1137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 40 548 1137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 37 543 1132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 41 550 1139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 42 550 1139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 120 C G - - MP 24 23 6 28 6 19 45 549 1138 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.513 -10.510 -9.945 -2.955 -8.392 -10.191 3.410 -9.256 -9.999 2.113 -10.178 -8.496 -0.184 -10.461 -6.079 -8.808 ML 25 23 6 28 6 14 40 547 1136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 40 546 1135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 36 542 1131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 41 548 1137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 41 548 1137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 119 C G - - MP 30 29 6 34 6 17 43 547 1136 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.674 -10.919 -10.011 -7.136 -8.373 -10.169 3.858 -9.283 -10.108 -1.355 -10.237 -3.467 -1.090 -10.522 -0.918 -8.909 ML 31 29 6 34 6 14 39 545 1134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 39 544 1134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 36 541 1130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 40 546 1135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 40 546 1135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 118 C G - - MP 36 35 6 40 6 15 41 545 1134 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -9.883 -9.622 -9.560 1.152 -8.199 -10.040 3.479 -8.963 -9.523 0.760 -9.836 -7.311 -0.158 -9.991 -5.820 -8.315 ML 37 35 6 40 6 13 39 543 1132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 38 543 1132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 36 540 1130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 40 544 1133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 40 544 1133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 117 G C - - MP 42 41 6 46 4 13 39 543 1132 -12.884 -13.091 -0.001 -11.505 -10.601 -8.228 -11.173 1.125 -12.472 -9.843 -7.294 -11.234 -9.528 3.737 -9.856 -1.958 -2.235 -10.057 -9.482 -9.873 ML 43 41 6 46 4 12 38 542 1131 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 37 541 1130 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 36 540 1129 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 38 543 1132 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 38 542 1132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 11 37 541 1130 -13.795 -0.000 -12.449 -9.288 -4.746 -10.175 1.986 D 49 47 6 50 3 9 35 539 1128 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 37 541 1131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 10 36 540 1129 -14.447 -0.000 1.587 -8.653 -0.015 -8.569 D 52 50 3 53 2 9 35 539 1128 -8.445 -0.004 IL 53 53 3 53 2 10 36 540 1129 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 9 35 539 1128 [ BEGR 45 ] - - - - - - S 55 54 1 56 3 0 0 32 50 -13.795 -0.000 -12.449 IL 56 56 2 56 3 1 1 39 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 95 - A - - - ML 57 56 2 59 3 1 1 32 50 -13.795 -0.000 -12.449 1.783 -5.194 -2.281 -1.615 D 58 56 2 59 3 0 0 34 52 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 96 - G - - - ML 60 59 3 62 3 1 1 31 49 -13.795 -0.000 -12.449 -2.723 -10.050 1.943 -9.055 D 61 59 3 62 3 0 0 33 51 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 97 - G - - - ML 63 62 3 65 3 1 1 30 48 -13.795 -0.000 -12.449 -3.060 -10.071 1.955 -9.067 D 64 62 3 65 3 0 0 32 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 98 - U - - - ML 66 65 3 68 3 1 1 29 47 -13.795 -0.000 -12.449 -2.756 -1.076 -7.320 1.753 D 67 65 3 68 3 0 0 30 49 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 99 - C - - - ML 69 68 3 71 5 1 1 28 46 -12.732 -0.001 -12.547 -12.759 -13.651 -8.906 1.874 -9.360 -1.593 D 70 68 3 71 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 100 116 c g - - MP 72 71 3 76 6 2 2 27 45 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -8.180 -7.775 -8.159 0.997 -7.104 -8.986 2.949 -7.728 -8.046 0.982 -8.541 1.792 -1.009 -8.342 -1.736 -6.765 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 101 115 c g - - MP 78 77 6 82 6 2 2 25 43 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -8.120 -7.774 -8.115 0.734 -7.012 -8.965 2.843 -7.649 -7.976 1.783 -8.486 -3.942 1.834 -8.309 -4.475 -6.700 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 102 114 G C - - MP 84 83 6 88 6 2 2 23 41 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.952 -8.974 -10.857 -6.091 -9.442 -9.831 2.367 -10.215 -9.819 3.431 -10.020 -6.868 -6.004 -10.222 -7.095 -9.727 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 103 113 G C - - MP 90 89 6 94 6 2 2 21 39 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.349 -8.165 -10.556 -0.125 -10.592 -9.542 0.548 -10.641 -9.456 3.742 -9.710 -5.940 -2.280 -9.648 -7.970 -9.429 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 104 112 G C - - MP 96 95 6 100 4 2 2 19 37 -12.884 -13.091 -0.001 -11.505 -11.628 -8.250 -13.965 -5.728 -13.248 -9.412 -7.548 -13.412 -9.619 3.995 -9.811 -6.183 -7.915 -9.880 -9.998 -13.064 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 105 - U - - - ML 102 101 6 104 3 1 1 16 34 -13.795 -0.000 -12.449 -10.840 -9.595 -12.243 1.999 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 106 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.795 -0.000 -12.449 -9.133 -4.333 -9.997 1.981 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 107 - C - - - ML 108 107 3 110 3 1 1 13 32 -13.795 -0.000 -12.449 -9.766 1.998 -10.365 -8.535 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 108 - A - - - ML 111 110 3 113 3 1 1 12 31 -13.795 -0.000 -12.449 1.276 -8.691 0.654 -8.603 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 109 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.795 -0.000 -12.449 1.998 -9.809 -9.044 -9.152 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 110 - A - - - ML 117 116 3 119 3 1 1 9 27 -13.795 -0.000 -12.449 1.964 -9.441 -3.386 -8.961 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 111 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -6.616 -2.711 -2.497 1.872 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 17 517 1106 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 182 1 17 517 1106 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 1 28 46 -0.001 -11.807 -11.214 -11.854 [ MATP 15 ] 10 27 G C - - MP 127 126 1 131 6 2 3 28 46 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.566 -8.252 -13.651 -5.703 -13.228 -9.433 -7.551 -13.206 -9.616 3.930 -9.815 -0.467 -7.908 -9.893 -9.990 -12.629 ML 128 126 1 131 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 C G - - MP 133 132 6 137 6 2 3 26 44 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -12.559 -12.802 -8.347 -11.401 -6.584 -7.836 3.998 -13.117 -13.853 -10.617 -7.861 -12.516 -8.931 -13.288 -10.020 -12.491 ML 134 132 6 137 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A - - MP 139 138 6 143 6 2 3 24 42 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.587 -1.894 -10.017 -0.416 -8.502 -10.290 -0.904 -9.342 -10.058 -6.805 -10.241 -8.326 3.840 -3.483 -6.201 -8.889 ML 140 138 6 143 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 C G - - MP 145 144 6 149 4 2 3 22 40 -12.884 -13.091 -0.001 -11.505 -1.056 -10.991 -10.031 -7.228 -8.383 -10.176 3.003 -9.297 -10.135 -7.201 -10.255 -9.389 -5.115 -10.548 2.849 -2.027 ML 146 144 6 149 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 26 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 2 19 37 -13.795 -0.000 -12.449 1.998 -9.809 -9.044 -9.152 D 152 150 6 153 3 0 0 21 40 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 2 18 36 -13.795 -0.000 -12.449 -1.619 -9.909 1.876 -8.974 D 155 153 3 156 3 0 0 20 39 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 2 17 35 -13.795 -0.000 -12.449 -2.849 1.780 -3.874 -1.481 D 158 156 3 159 3 0 0 19 38 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - c - - - ML 160 159 3 162 3 1 1 16 34 -13.795 -0.037 -5.305 -0.014 0.971 -6.927 0.059 D 161 159 3 162 3 0 0 18 36 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 163 162 3 165 3 1 1 14 33 -13.758 -0.000 -12.412 0.168 -2.386 -3.976 1.391 D 164 162 3 165 3 0 0 15 33 -10.004 -0.072 -4.395 IL 165 165 3 165 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 166 165 3 168 3 1 1 13 32 -13.795 -0.000 -12.449 -8.340 -10.112 1.998 -9.099 D 167 165 3 168 3 0 0 16 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - - - ML 169 168 3 171 3 1 1 12 30 -13.795 -0.000 -12.449 -8.340 -10.112 1.998 -9.099 D 170 168 3 171 3 0 0 15 34 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - U - - - ML 172 171 3 174 3 1 1 11 29 -13.795 -0.852 -1.165 -4.715 -1.887 -3.629 1.852 D 173 171 3 174 3 0 0 14 33 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - U - - - ML 175 174 3 177 3 1 1 10 28 -12.944 -0.001 -11.598 -3.533 -1.500 -6.510 1.827 D 176 174 3 177 3 0 0 8 26 -14.054 -0.004 -8.446 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - G - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 0.637 -4.284 1.020 -1.454 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 182 125 1 183 3 0 0 499 1089 -13.795 -0.000 -12.449 IL 183 183 2 183 3 1 1 501 1090 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - G - - - ML 184 183 2 186 5 1 1 499 1089 -12.732 -0.001 -12.547 -12.759 -13.651 0.070 -8.973 1.558 -8.562 D 185 183 2 186 5 0 0 496 1085 -4.959 -0.803 -4.221 -2.596 -2.508 IL 186 186 3 186 5 1 1 499 1088 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 29 94 C G - - MP 187 186 3 191 6 2 2 498 1088 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.714 -10.996 -10.031 -7.232 -8.382 -10.176 3.820 -9.297 -10.135 -7.204 -10.255 -9.400 0.803 -10.548 -3.233 -8.937 ML 188 186 3 191 6 1 1 496 1085 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 495 1084 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 489 1078 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 497 1086 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 497 1086 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 30 93 C G - - MP 193 192 6 197 6 2 2 496 1086 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -8.767 -8.529 -8.662 0.757 -7.417 -9.347 3.345 -8.130 -8.563 -1.477 -9.005 -6.151 1.382 -8.902 0.190 -7.295 ML 194 192 6 197 6 1 1 494 1083 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 493 1082 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 488 1077 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 495 1084 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 495 1084 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 92 C G - - MP 199 198 6 203 6 2 2 494 1084 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -10.356 -10.441 -9.826 -0.033 -8.263 -10.079 3.768 -9.136 -9.879 -0.439 -10.074 -8.476 -0.957 -10.281 -2.958 -8.666 ML 200 198 6 203 6 1 1 492 1081 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 491 1080 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 486 1075 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 493 1082 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 493 1082 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 32 91 G C - - MP 205 204 6 209 6 2 2 492 1082 -13.691 -13.631 -0.001 -12.407 -12.687 -13.082 -11.568 -8.286 -13.375 -5.745 -12.387 -9.437 -0.073 -12.800 -9.631 3.907 -9.824 -6.217 -7.684 -9.900 -9.505 -12.377 ML 206 204 6 209 6 1 1 490 1079 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 488 1078 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 485 1074 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 491 1080 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 491 1080 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 33 90 G C - - MP 211 210 6 215 4 2 2 490 1080 -12.884 -13.091 -0.001 -11.505 -10.290 -8.629 -10.183 -0.245 -9.437 -9.837 0.668 -9.925 -9.618 3.595 -9.874 -6.366 -5.830 -9.919 0.525 -9.041 ML 212 210 6 215 4 1 1 489 1078 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 486 1075 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 214 210 6 215 4 0 0 484 1073 -4.568 -4.250 -2.265 -0.520 IL 215 215 5 215 4 1 1 490 1079 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 489 1079 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - C - - - ML 217 216 6 219 3 1 1 488 1078 -13.795 -0.000 -12.449 -9.766 1.998 -10.365 -8.535 D 218 216 6 219 3 0 0 482 1071 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 488 1077 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - U - - - ML 220 219 3 222 3 1 1 487 1077 -13.795 -0.000 -12.449 -10.840 -9.595 -12.243 1.999 D 221 219 3 222 3 0 0 478 1067 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 487 1076 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - u - - - ML 223 222 3 225 3 1 1 486 1076 -13.795 -0.000 -12.449 0.013 -0.014 -0.015 0.015 D 224 222 3 225 3 0 0 473 1063 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 486 1075 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - u - - - ML 226 225 3 228 3 1 1 485 1075 -13.795 -0.000 -12.449 0.013 -0.014 -0.015 0.015 D 227 225 3 228 3 0 0 466 1055 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 484 1073 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - u - - - ML 229 228 3 231 3 1 1 484 1074 -13.795 -0.000 -12.449 0.013 -0.014 -0.015 0.015 D 230 228 3 231 3 0 0 450 1039 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 482 1071 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 39 - A - - - ML 232 231 3 234 3 1 1 483 1073 -1.557 -0.600 -12.449 1.998 -9.809 -9.044 -9.152 D 233 231 3 234 3 0 0 380 969 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 517 1106 -0.045 -5.023 -14.673 0.000 0.000 0.000 0.000 [ MATL 43 ] 89 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.942 -8.080 -5.401 -2.948 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Ile ACC arch-Ile-r2-033017 LENG 75 MAXL 540 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:50:04 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ile-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Ile-r2-033017.sto NSEQ 214 EFFN 3.954376 CKSUM 894548418 STATS LOCAL MSV -8.2183 0.71891 STATS LOCAL VITERBI -9.1713 0.71891 STATS LOCAL FORWARD -3.3965 0.71891 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55843 1.30763 1.18058 1.55131 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 0.00000 * 1 1.80865 2.30302 0.47499 2.16911 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 2 2.69193 2.98838 0.17106 3.24130 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 3 2.80674 3.78343 0.11416 3.69945 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 4 2.33325 0.79255 1.40714 1.58237 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 5 2.83311 0.39338 2.41778 1.73001 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 6 1.89061 0.80962 1.70391 1.50498 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 7 1.85804 2.95854 0.31763 2.74487 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 8 3.06351 2.86235 3.58991 0.14094 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 9 0.44418 2.86411 1.50647 2.52664 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 10 2.81823 3.72371 0.11741 3.61477 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 11 3.89481 0.12068 3.73891 2.66560 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 12 2.13734 1.64996 2.02107 0.58437 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 13 2.15337 0.95054 2.06973 0.99113 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 14 0.07833 3.88182 3.54905 3.65071 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 15 2.24813 3.54680 0.19416 3.16863 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 16 2.28294 0.39633 2.90234 1.76997 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 17 1.36350 1.03000 2.39301 1.21782 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04734 4.23394 3.44997 1.46634 0.26236 1.09861 0.40547 18 1.33474 1.99787 2.30863 0.68965 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02994 4.21654 4.21654 1.46634 0.26236 0.64877 0.73959 19 3.32944 4.27900 0.07386 3.83857 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 20 3.32944 4.27900 0.07386 3.83857 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 21 2.38067 2.16710 2.79501 0.31213 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.40824 4.23394 1.13729 1.46634 0.26236 1.09861 0.40547 22 2.00979 1.89930 2.55839 0.44804 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86839 3.86839 1.46634 0.26236 0.08655 2.49005 23 1.06540 2.32312 0.96710 1.73016 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 24 1.75390 2.24134 0.53525 2.00199 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 25 0.65745 2.14080 1.48868 1.97618 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 26 2.93907 3.88635 0.10491 3.64358 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 27 3.75800 0.16392 3.53671 2.31515 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 28 1.35985 2.99256 0.47795 2.61605 28 G - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 29 3.19411 0.34450 2.97740 1.61196 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 30 2.00099 0.82385 1.99189 1.23917 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 31 2.24454 0.56476 2.06469 1.61612 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 32 2.58038 2.70233 0.21082 3.05152 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 33 1.86796 1.94912 0.58700 1.91619 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 34 3.60897 0.09598 4.15601 3.02060 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 35 3.22770 3.09159 3.76339 0.11461 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 36 1.26644 1.52730 1.54788 1.24359 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 37 1.26644 1.52730 1.54788 1.24359 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 38 1.26644 1.52730 1.54788 1.24359 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 39 0.07833 3.88182 3.54905 3.65071 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.30449 1.39430 4.23394 3.46235 0.03186 1.09861 0.40547 40 0.16025 3.23241 3.03261 2.80643 89 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 41 2.36299 0.65539 1.65742 1.62968 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 42 3.28603 0.24077 2.58465 2.29113 91 C - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 43 1.85658 2.21075 0.50036 2.05679 92 G - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 44 1.50560 2.15844 0.69022 1.82546 93 G - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 45 1.81172 3.13882 0.30024 2.94400 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 46 0.36643 2.58318 2.29956 2.03288 95 A - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 47 2.68522 3.85539 0.12876 3.45947 96 G - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 48 2.78970 3.92884 0.11709 3.52706 97 G - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 49 2.19721 1.92553 2.84377 0.37851 98 U - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 50 2.96136 0.23370 3.56311 2.05334 99 C - - , 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 51 1.80850 1.12082 1.21132 1.54983 100 c - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 52 1.92007 1.06649 1.45543 1.28776 101 c - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 53 2.27039 1.44162 0.59863 2.20167 102 G - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 54 1.96109 2.23138 0.41136 2.41728 103 G - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 55 3.01029 3.86680 0.09694 3.80831 104 G - - < 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 56 3.22770 3.09159 3.76339 0.11461 105 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 57 3.02409 2.80438 3.54867 0.14840 106 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 58 3.60897 0.09598 4.15601 3.02060 107 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 59 0.64383 2.79789 1.12256 2.42657 108 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 60 0.07833 3.88182 3.54905 3.65071 109 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 61 0.12691 3.52031 2.94739 3.29362 110 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 62 2.41752 2.30677 2.65356 0.29992 111 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 63 3.96874 0.11715 3.71758 2.69772 112 C - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 64 2.65737 0.46552 2.09665 1.71929 113 C - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 65 2.45257 0.65083 1.35695 2.00342 114 C - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 66 1.45856 1.57541 0.96119 1.72559 115 g - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 67 1.79078 1.56324 1.00331 1.35849 116 g - - > 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 68 2.96318 0.37206 2.77347 1.62665 117 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 69 1.71436 1.83915 0.72947 1.72147 118 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 70 2.04513 2.59369 0.33025 2.56206 119 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 71 1.79353 1.49655 0.71927 2.09866 120 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 72 3.85538 0.13686 3.62265 2.52531 121 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 73 3.44295 0.19868 2.85970 2.39769 122 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02942 4.23394 4.23394 1.46634 0.26236 1.09861 0.40547 74 2.36150 0.54042 2.16131 1.57002 123 C - - ) 1.38629 1.38629 1.38629 1.38629 0.25451 1.55965 4.23394 1.11735 0.39623 1.09861 0.40547 75 0.07833 3.88182 3.54905 3.65071 127 A - - : 1.38629 1.38629 1.38629 1.38629 0.01482 4.21934 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-iMet ACC arch-iMet-r2-033017 STATES 239 NODES 64 CLEN 75 W 563 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:24:51 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-iMet-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-iMet-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-iMet-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-iMet-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-iMet-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-iMet-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-iMet-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 179 EFFN 179.000000 CKSUM 1706289804 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.9303 0.71894 ECMLC 0.65442 -7.77810 1.68126 1600000 585666 0.002049 ECMGC 0.41439 -52.35546 -40.49942 1600000 54421 0.007350 ECMLI 0.66445 -7.43898 1.83687 1600000 570016 0.002105 ECMGI 0.44120 -47.72797 -36.75114 1600000 50739 0.007883 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 563 1165 -12.425 -13.670 -0.002 -10.124 IL 1 1 2 1 4 15 42 565 1167 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 44 565 1168 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 138 - A - - MR 3 2 3 5 5 22 50 564 1166 -12.477 -0.001 -12.292 -12.505 -13.396 1.998 -9.568 -8.804 -8.915 D 4 2 3 5 5 11 39 561 1163 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 42 564 1166 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 137 A U - - MP 6 5 3 10 6 22 50 563 1165 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -10.908 -10.651 -5.971 3.993 -11.446 -11.512 -9.838 -5.793 -11.110 -7.211 -11.210 -6.210 -9.967 -11.477 -10.530 -5.969 ML 7 5 3 10 6 13 41 561 1163 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 41 560 1162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 9 37 555 1157 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 42 562 1164 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 42 562 1164 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 136 G C - - MP 12 11 6 16 6 21 49 561 1163 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.376 -8.002 -13.692 -5.478 -12.996 -9.165 -7.300 -13.148 -9.371 3.994 -9.563 -5.935 -7.666 -9.632 -9.748 -12.781 ML 13 11 6 16 6 13 41 559 1161 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 40 558 1160 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 37 553 1155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 42 560 1162 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 42 560 1162 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 135 C G - - MP 18 17 6 22 6 19 47 559 1161 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -12.494 -12.738 -8.345 -11.084 -6.582 -7.836 3.997 -12.868 -13.619 -10.424 -7.861 -12.352 -8.684 -13.167 -9.753 -12.281 ML 19 17 6 22 6 13 40 557 1159 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 40 556 1158 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 36 552 1154 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 41 558 1160 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 41 558 1160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 134 G C - - MP 24 23 6 28 6 17 45 557 1159 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.241 -8.006 -13.067 -1.150 -12.939 -9.213 -7.301 -12.717 -9.365 3.955 -9.573 -5.912 -7.647 -9.663 -9.723 -11.951 ML 25 23 6 28 6 12 40 555 1157 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 40 555 1157 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 8 36 551 1153 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 41 556 1158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 41 556 1158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 133 G C - - MP 30 29 6 34 6 15 43 555 1157 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.087 -8.010 -12.536 0.412 -12.859 -9.275 -7.297 -12.308 -9.357 3.871 -9.585 -5.884 -7.621 -9.702 -9.685 -11.318 ML 31 29 6 34 6 12 39 553 1155 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 39 553 1155 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 8 36 550 1152 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 40 554 1156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 40 554 1156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 132 G C - - MP 36 35 6 40 6 13 41 553 1155 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.248 -8.081 -12.636 -5.515 -11.532 -9.221 0.746 -12.054 -9.395 3.834 -9.591 -6.007 -7.206 -9.677 -8.838 -11.582 ML 37 35 6 40 6 11 38 552 1154 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 38 551 1153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 36 549 1151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 11 39 553 1155 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 11 39 552 1154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 131 G C - - MP 42 41 6 46 4 11 39 551 1153 -12.629 -12.836 -0.001 -11.250 -11.058 -8.010 -12.451 0.835 -12.842 -9.286 -7.294 -12.242 -9.355 3.814 -3.199 -5.878 -7.613 -9.708 -9.675 -11.222 ML 43 41 6 46 4 10 37 550 1152 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 37 550 1152 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 36 548 1150 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 10 38 551 1153 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 10 38 551 1153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 9 37 549 1151 -13.540 -0.000 -12.194 -8.815 -4.505 -9.671 1.983 D 49 47 6 50 3 7 35 548 1150 -6.174 -1.687 -0.566 IL 50 50 3 50 3 9 37 550 1152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 8 36 548 1150 -14.191 -0.000 0.474 -8.458 1.381 -8.227 D 52 50 3 53 2 7 35 547 1149 -8.445 -0.004 IL 53 53 3 53 2 8 36 549 1151 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 7 35 547 1149 [ BEGR 45 ] - - - - - - S 55 54 1 56 3 0 0 32 51 -13.540 -0.000 -12.194 IL 56 56 2 56 3 1 1 39 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 91 - A - - - ML 57 56 2 59 3 1 1 32 51 -13.540 -0.000 -12.194 1.998 -9.568 -8.804 -8.915 D 58 56 2 59 3 0 0 34 52 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 92 - G - - - ML 60 59 3 62 3 1 1 31 50 -13.540 -0.000 -12.194 -8.091 -9.864 1.998 -8.851 D 61 59 3 62 3 0 0 33 51 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 111 - A - - - ML 63 62 3 65 3 1 1 30 48 -13.540 -0.000 -12.194 1.295 -8.032 0.580 -4.413 D 64 62 3 65 3 0 0 32 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 112 - U - - - ML 66 65 3 68 3 1 1 29 47 -13.540 -0.000 -12.194 -6.337 -0.628 -2.904 1.681 D 67 65 3 68 3 0 0 30 49 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 113 - C - - - ML 69 68 3 71 5 1 1 28 46 -12.477 -0.001 -12.292 -12.505 -13.396 -9.437 1.998 -10.013 -8.248 D 70 68 3 71 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 114 130 G C - - MP 72 71 3 76 6 2 2 27 45 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -9.404 -7.862 -9.545 0.364 -11.053 -10.467 2.511 -9.723 -9.087 3.141 -9.593 -2.678 -6.480 -9.882 -8.269 -8.250 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 115 129 G C - - MP 78 77 6 82 6 2 2 25 43 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -9.360 -7.813 -9.486 1.120 -10.970 -10.335 2.237 -9.694 -9.057 3.170 -9.549 -3.720 -6.380 -9.762 -8.168 -8.208 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 116 128 U A - - MP 84 83 6 88 6 2 2 23 41 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -10.079 -9.551 -9.688 1.251 -8.415 -10.199 -0.339 -9.113 -9.635 -0.639 -9.921 -7.142 3.603 -10.331 -6.095 -8.499 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 117 127 G C - - MP 90 89 6 94 6 2 2 21 39 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -10.272 -7.983 -10.763 1.734 -11.835 -9.629 -0.445 -10.816 -9.270 3.572 -9.606 -5.679 -7.113 -9.807 -8.969 -9.473 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 118 126 G C - - MP 96 95 6 100 4 2 2 19 37 -12.629 -12.836 -0.001 -11.250 -11.376 -8.002 -13.692 -5.478 -12.996 -9.165 -7.300 -13.148 -9.371 3.994 -9.563 -5.935 -7.666 -9.632 -9.748 -12.781 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 119 - U - - - ML 102 101 6 104 3 1 1 16 34 -13.540 -0.000 -12.194 -10.517 -9.308 -11.879 1.999 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 120 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.540 -0.000 -12.194 -10.517 -9.308 -11.879 1.999 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 121 - C - - - ML 108 107 3 110 3 1 1 14 32 -13.540 -0.000 -12.194 -9.437 1.998 -10.013 -8.248 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 122 - A - - - ML 111 110 3 113 3 1 1 12 31 -13.540 -0.000 -12.194 1.865 -8.501 -1.513 -8.319 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 123 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.540 -0.000 -12.194 1.998 -9.568 -8.804 -8.915 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 124 - A - - - ML 117 116 3 119 3 1 1 9 28 -13.540 -0.000 -12.194 1.843 -4.463 -1.472 -7.388 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 125 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -10.517 -9.308 -11.879 1.999 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 16 525 1127 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 182 0 16 525 1127 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 1 28 46 -0.002 -11.556 -10.963 -11.603 [ MATP 15 ] 10 28 G C - - MP 127 126 1 131 6 2 3 28 46 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.337 -8.003 -13.495 -5.463 -12.989 -9.178 -7.303 -13.020 -9.369 3.970 -9.566 -1.793 -7.663 -9.641 -9.746 -12.504 ML 128 126 1 131 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 G C - - MP 133 132 6 137 6 2 3 26 44 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.376 -8.002 -13.692 -5.478 -12.996 -9.165 -7.300 -13.148 -9.371 3.994 -9.563 -5.935 -7.666 -9.632 -9.748 -12.781 ML 134 132 6 137 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 G C - - MP 139 138 6 143 6 2 3 24 42 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -10.208 -8.019 -10.602 0.855 -11.241 -9.666 1.448 -10.605 -9.275 3.513 -9.614 -5.702 -6.868 -9.815 -8.544 -9.327 ML 140 138 6 143 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 U U - - MP 145 144 6 149 4 2 2 22 40 -12.629 -12.836 -0.001 -11.250 -10.455 -10.726 -9.775 -0.500 -8.129 -9.922 2.119 -9.042 -9.878 -6.938 -9.999 -9.110 -2.342 -10.293 0.372 3.238 ML 146 144 6 149 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 26 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 2 19 38 -13.540 -0.000 -12.194 1.998 -9.568 -8.804 -8.915 D 152 150 6 153 3 0 0 22 40 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 1 18 37 -13.540 -0.000 -12.194 -8.091 -9.864 1.998 -8.851 D 155 153 3 156 3 0 0 21 39 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 17 35 -13.540 -0.000 -12.194 -8.759 1.759 -9.387 -0.709 D 158 156 3 159 3 0 0 20 38 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 160 159 3 162 3 1 1 16 34 -13.540 -0.000 -12.194 -8.604 1.868 -9.065 -1.531 D 161 159 3 162 3 0 0 19 37 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - A - - - ML 163 162 3 165 3 1 1 15 33 -13.540 -0.000 -12.194 1.468 -7.809 -8.497 0.295 D 164 162 3 165 3 0 0 18 36 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 166 165 3 168 3 1 1 13 32 -13.540 -0.000 -12.194 -8.091 -9.864 1.998 -8.851 D 167 165 3 168 3 0 0 16 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - - - ML 169 168 3 171 3 1 1 12 30 -13.540 -0.000 -12.194 -8.091 -9.864 1.998 -8.851 D 170 168 3 171 3 0 0 15 34 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - A - - - ML 172 171 3 174 3 1 1 10 29 -3.815 -0.515 -2.125 1.055 -2.294 -6.655 0.773 D 173 171 3 174 3 0 0 9 27 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 11 29 -4.589 -0.071 -7.289 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - g - - - ML 175 174 3 177 3 1 1 9 28 -13.165 -0.001 -11.819 0.429 -1.508 0.844 -0.980 D 176 174 3 177 3 0 0 9 27 -12.846 -0.010 -7.238 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - A - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 1.889 -8.177 -8.318 -1.784 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 182 125 1 183 3 0 0 508 1110 -13.540 -0.000 -12.194 IL 183 183 2 183 3 1 1 509 1111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - G - - - ML 184 183 2 186 5 1 1 508 1110 -12.477 -0.001 -12.292 -12.505 -13.396 -8.091 -9.864 1.998 -8.851 D 185 183 2 186 5 0 0 504 1106 -4.959 -0.803 -4.221 -2.596 -2.508 IL 186 186 3 186 5 1 1 507 1109 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 90 C G - - MP 187 186 3 191 6 2 2 507 1109 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -8.320 -7.969 -8.269 1.144 -7.131 -9.062 3.480 -7.783 -8.142 0.767 -8.621 -1.996 -1.996 -8.511 -1.356 -6.881 ML 188 186 3 191 6 1 1 504 1106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 503 1105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 497 1099 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 505 1107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 505 1107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 89 C G - - MP 193 192 6 197 6 2 2 505 1107 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -10.230 -9.939 -9.722 0.209 -8.285 -10.062 3.352 -9.084 -9.738 2.146 -9.953 -7.700 -4.962 -10.301 -2.683 -8.575 ML 194 192 6 197 6 1 1 502 1104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 501 1103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 496 1098 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 503 1105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 503 1105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 88 G C - - MP 199 198 6 203 6 2 2 503 1105 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.376 -8.002 -13.692 -5.478 -12.996 -9.165 -7.300 -13.148 -9.371 3.994 -9.563 -5.935 -7.666 -9.632 -9.748 -12.781 ML 200 198 6 203 6 1 1 500 1102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 499 1101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 494 1096 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 501 1103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 501 1103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 87 G C - - MP 205 204 6 209 6 2 2 501 1103 -13.443 -13.382 -0.001 -12.159 -12.438 -12.834 -11.376 -8.002 -13.692 -5.478 -12.996 -9.165 -7.300 -13.148 -9.371 3.994 -9.563 -5.935 -7.666 -9.632 -9.748 -12.781 ML 206 204 6 209 6 1 1 498 1100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 496 1099 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 493 1095 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 499 1101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 499 1101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 86 G C - - MP 211 210 6 215 4 2 2 499 1101 -12.629 -12.836 -0.001 -11.250 -11.376 -8.002 -13.692 -5.478 -12.996 -9.165 -7.300 -13.148 -9.371 3.994 -9.563 -5.935 -7.666 -9.632 -9.748 -12.781 ML 212 210 6 215 4 1 1 497 1099 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 494 1096 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 214 210 6 215 4 0 0 492 1094 -4.568 -4.250 -2.265 -0.520 IL 215 215 5 215 4 1 1 498 1100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 498 1100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - C - - - ML 217 216 6 219 3 1 1 497 1099 -13.540 -0.000 -12.194 -9.437 1.998 -10.013 -8.248 D 218 216 6 219 3 0 0 490 1092 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 496 1099 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - - - ML 220 219 3 222 3 1 1 496 1098 -13.540 -0.000 -12.194 -10.517 -9.308 -11.879 1.999 D 221 219 3 222 3 0 0 486 1088 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 495 1097 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - u - - - ML 223 222 3 225 3 1 1 495 1097 -13.540 -0.000 -12.194 0.016 -0.016 -0.018 0.018 D 224 222 3 225 3 0 0 481 1083 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 494 1096 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - u - - - ML 226 225 3 228 3 1 1 494 1096 -13.540 -0.000 -12.194 0.016 -0.016 -0.018 0.018 D 227 225 3 228 3 0 0 473 1075 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 492 1094 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - u - - - ML 229 228 3 231 3 1 1 493 1095 -13.540 -0.000 -12.194 0.016 -0.016 -0.018 0.018 D 230 228 3 231 3 0 0 457 1060 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 490 1092 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - A - - - ML 232 231 3 234 3 1 1 492 1094 -1.667 -0.546 -12.194 1.998 -9.568 -8.804 -8.915 D 233 231 3 234 3 0 0 388 991 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 528 1130 -0.044 -5.055 -14.344 0.000 0.000 0.000 0.000 [ MATL 43 ] 85 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.998 -9.568 -8.804 -8.915 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-iMet ACC arch-iMet-r2-033017 LENG 75 MAXL 539 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:24:51 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-iMet-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-iMet-r2-033017.sto NSEQ 179 EFFN 2.504623 CKSUM 1706289804 STATS LOCAL MSV -8.8629 0.71894 STATS LOCAL VITERBI -9.4263 0.71894 STATS LOCAL FORWARD -3.3178 0.71894 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50415 1.28989 1.19979 1.60329 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 0.00000 * 1 0.31257 2.86213 1.89897 2.78767 1 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 2 2.63142 3.31401 0.15910 3.25088 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 3 3.27082 0.22230 3.05735 2.16859 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 4 2.43263 3.22403 0.18744 3.13909 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 5 2.13399 3.04020 0.24749 2.93652 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 6 2.20365 2.17981 0.37214 2.43866 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 7 1.95019 2.76711 0.32211 2.65509 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 8 2.57262 2.48183 3.08936 0.22999 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 9 1.13445 2.56865 0.71957 2.16456 9 g - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 10 2.56675 3.31940 0.16567 3.22604 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 11 2.63887 3.32313 0.15752 3.26349 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 12 1.77286 1.84601 0.60308 2.07814 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 13 2.01746 1.20691 1.87800 0.87950 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 14 0.14249 3.31681 3.03334 3.02870 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 15 2.77964 3.66816 0.13538 3.24340 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 16 2.29186 0.46556 2.87750 1.53777 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 17 2.47378 0.35057 3.05929 1.80468 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 18 0.69260 2.14668 2.22442 1.29198 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 19 2.77964 3.66816 0.13538 3.24340 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 20 2.77964 3.66816 0.13538 3.24340 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 21 0.96598 1.89089 2.14668 1.04532 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.24762 2.79136 1.84514 0.50838 0.91998 1.09861 0.40547 22 1.14653 1.88005 1.21991 1.45063 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86966 3.86966 1.46634 0.26236 0.20467 1.68693 23 0.30368 2.66416 2.59362 2.14136 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 24 1.74550 2.04054 1.01025 1.10457 25 g - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 25 2.31978 0.67809 1.71082 1.54458 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 26 3.44481 0.18879 3.14959 2.33042 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 27 3.39320 0.20668 3.13352 2.21130 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 28 2.77964 3.66816 0.13538 3.24340 29 G - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 29 1.83598 0.94739 1.53812 1.43546 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 30 1.94045 0.98653 1.30698 1.54715 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 31 2.63796 3.32202 0.15771 3.26195 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 32 2.63677 3.32056 0.15796 3.25993 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 33 2.63580 3.31937 0.15816 3.25829 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 34 2.94036 0.18340 3.51665 2.46484 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 35 2.68287 2.63448 3.20313 0.19938 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 36 1.25729 1.54233 1.56472 1.22914 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 37 1.25729 1.54233 1.56472 1.22914 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 38 1.25729 1.54233 1.56472 1.22914 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 39 0.14249 3.31681 3.03334 3.02870 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.25930 1.55844 4.02055 3.47206 0.03155 1.09861 0.40547 40 0.14249 3.31681 3.03334 3.02870 85 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 41 3.45856 0.18763 3.15576 2.33303 86 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 42 3.46146 0.18739 3.15706 2.33358 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 43 3.46494 0.18711 3.15861 2.33423 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 44 1.79243 1.41971 0.88231 1.72689 89 g - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 45 1.68377 1.69779 0.83333 1.62638 90 g - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 46 0.14249 3.31681 3.03334 3.02870 91 A - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 47 2.77964 3.66816 0.13538 3.24340 92 G - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 48 0.72590 2.41663 1.23481 1.99513 111 a - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 49 1.96486 1.70172 2.36938 0.53800 112 U - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 50 2.94036 0.18340 3.51665 2.46484 113 C - - , 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 51 1.82042 1.44244 0.82113 1.82165 114 g - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 52 1.73060 1.54235 0.78905 1.86647 115 g - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 53 1.82928 1.43590 1.71605 0.86323 116 u - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 54 1.64991 2.28588 0.49919 2.31036 117 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 55 2.63488 3.31823 0.15836 3.25672 118 G - - < 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 56 2.68287 2.63448 3.20313 0.19938 119 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 57 2.68287 2.63448 3.20313 0.19938 120 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 58 2.94036 0.18340 3.51665 2.46484 121 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 59 0.30773 2.78139 2.14036 2.46136 122 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 60 0.14249 3.31681 3.03334 3.02870 123 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 61 0.34748 2.62391 2.08517 2.33587 124 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 62 2.68287 2.63448 3.20313 0.19938 125 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 63 3.45430 0.18799 3.15385 2.33222 126 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 64 2.55351 0.56806 2.12306 1.44433 127 C - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 65 0.97767 1.87622 1.27859 1.64914 128 a - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 66 2.10431 0.87906 1.41889 1.50997 129 c - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 67 2.05689 0.91460 1.32554 1.58078 130 c - - > 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 68 2.88693 0.37359 2.56336 1.72065 131 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 69 2.68224 0.41995 2.04727 1.92811 132 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 70 3.15529 0.28793 2.86509 1.89327 133 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 71 3.34757 0.22040 3.05668 2.15773 134 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 72 2.44835 3.22798 0.19128 3.03610 135 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 73 3.46285 0.18728 3.15768 2.33384 136 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 74 3.02813 2.20406 2.68114 0.25779 137 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03655 4.02055 4.02055 1.46634 0.26236 1.09861 0.40547 75 0.14249 3.31681 3.03334 3.02870 138 A - - : 1.38629 1.38629 1.38629 1.38629 0.19705 1.72121 * 1.12662 0.39175 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Leu ACC arch-Leu-r2-033017 STATES 274 NODES 75 CLEN 85 W 682 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:00:54 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Leu-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Leu-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Leu-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Leu-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Leu-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Leu-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Leu-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 893 EFFN 893.000000 CKSUM 764118852 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.1587 0.71884 ECMLC 0.67548 -7.46848 1.95851 1600000 699286 0.001716 ECMGC 0.29160 -55.12365 -39.99215 1600000 32987 0.012126 ECMLI 0.70682 -6.67351 2.27287 1600000 669001 0.001794 ECMGI 0.30736 -50.96025 -36.74710 1600000 31572 0.012669 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 682 1418 -14.731 -15.977 -0.000 -12.430 IL 1 1 2 1 4 19 47 684 1421 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 48 684 1421 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 173 - A - - MR 3 2 3 5 5 28 52 683 1420 -1.435 -0.666 -14.596 -14.808 -15.700 2.000 -11.790 -11.034 -11.123 D 4 2 3 5 5 16 43 679 1416 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 28 51 684 1421 -0.587 -1.582 -15.246 -13.414 -14.520 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 169 G C - - MP 6 5 3 10 6 26 51 681 1418 -15.716 -5.667 -0.029 -14.431 -14.711 -15.106 -13.553 -10.276 -15.507 -1.123 -15.234 -11.470 -9.574 -15.112 -11.638 3.957 -11.842 -8.190 -9.926 -11.925 -12.005 -14.435 ML 7 5 3 10 6 17 45 678 1415 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 45 678 1415 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 39 673 1409 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 46 680 1417 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 24 49 682 1419 -0.615 -1.540 -11.061 -9.228 -10.334 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 165 C G - - MP 12 11 6 16 6 25 49 679 1416 -15.716 -15.655 -0.201 -14.431 -2.945 -15.106 -12.700 -12.730 -12.078 -8.987 -10.498 -12.287 3.586 -11.375 -12.147 1.993 -12.301 -10.786 -7.222 -12.624 -8.199 -10.966 ML 13 11 6 16 6 17 44 677 1413 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 45 676 1413 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 39 671 1408 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 46 678 1415 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 46 678 1415 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 164 G C - - MP 18 17 6 22 6 24 48 677 1414 -15.515 -15.454 -0.000 -14.231 -14.511 -14.906 -11.704 -9.857 -11.837 1.838 -12.628 -11.624 -0.329 -12.069 -5.897 3.524 -11.508 -7.495 -3.315 -11.467 -9.894 -10.647 ML 19 17 6 22 6 17 43 675 1412 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 21 45 674 1411 -14.190 -12.919 -8.828 -12.898 -0.004 -11.111 -8.662 1.997 -9.190 -7.566 D 21 17 6 22 6 13 38 670 1407 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 45 676 1413 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 45 676 1413 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 163 G C - - MP 24 23 6 28 6 22 46 675 1412 -15.515 -15.454 -0.000 -14.231 -14.511 -14.906 -11.822 -9.984 -11.933 1.750 -12.307 -11.666 -0.990 -12.047 -11.235 3.522 -11.569 -7.633 -0.652 -11.572 -9.692 -10.742 ML 25 23 6 28 6 16 42 673 1410 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 20 44 673 1410 -14.190 -12.919 -8.828 -12.898 -0.004 -11.111 -7.504 -9.278 1.996 -8.266 D 27 23 6 28 6 13 38 669 1405 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 44 674 1411 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 44 674 1411 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 162 G C - - MP 30 29 6 34 6 20 44 673 1410 -15.515 -15.454 -0.000 -14.231 -14.511 -14.906 -13.181 -10.082 -14.675 -0.311 -14.944 -11.338 -2.824 -14.435 -11.431 3.905 -11.656 -3.833 -9.697 -11.769 -11.763 -13.467 ML 31 29 6 34 6 16 41 671 1408 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 43 672 1409 -14.190 -12.919 -0.007 -12.898 -8.031 -11.111 -7.504 -9.278 1.996 -8.266 D 33 29 6 34 6 13 37 668 1404 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 42 672 1409 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 42 672 1409 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 161 G C - - MP 36 35 6 40 6 18 42 671 1408 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -9.747 -2.746 -9.569 -0.494 -10.697 -10.155 0.291 -10.254 -9.991 3.586 -10.239 -1.556 -3.196 -9.421 0.533 -8.532 ML 37 35 6 40 6 15 40 670 1407 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 39 669 1406 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 37 667 1404 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 41 671 1407 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 41 670 1407 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 160 G C - - MP 42 41 6 46 4 16 40 669 1406 -14.937 -15.144 -0.000 -13.558 -13.208 -10.290 -14.388 0.107 -15.054 -11.622 -9.570 -14.235 -11.624 3.880 -11.875 -3.346 -3.420 -12.022 -11.921 -13.113 ML 43 41 6 46 4 14 39 668 1405 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 38 668 1404 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 37 666 1403 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 40 669 1406 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 39 669 1406 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 14 38 667 1404 -15.847 -0.000 -14.501 -12.310 -4.835 -13.428 1.987 D 49 47 6 50 3 12 36 666 1403 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 38 668 1405 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - a - - - ML 51 50 3 53 2 13 37 666 1403 -4.950 -0.047 0.710 -2.594 0.169 0.104 D 52 50 3 53 2 12 36 665 1402 -8.445 -0.004 IL 53 53 3 53 2 13 37 667 1404 -1.531 -0.613 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 173 12 36 665 1402 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 2 11 635 1372 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 116 2 11 635 1372 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 78 159 -0.111 -13.843 -3.761 -13.890 [ MATP 15 ] 12 38 G C - - MP 58 57 1 62 6 2 6 78 159 -15.606 -15.545 -0.000 -14.321 -14.601 -14.996 -10.546 -5.555 -10.456 -0.997 -11.484 -10.936 2.176 -10.986 -10.553 3.342 -10.868 -4.055 -0.408 -10.320 -8.617 -9.360 ML 59 57 1 62 6 1 2 76 157 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 3 58 139 -13.377 -12.106 -8.014 -12.084 -0.008 -10.298 1.995 -8.247 -7.508 -7.638 D 61 57 1 62 6 0 0 70 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 77 158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 77 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 37 C G - - MP 64 63 6 68 6 2 6 76 157 -15.606 -15.545 -0.000 -14.321 -14.601 -14.996 -12.655 -12.936 -11.973 -9.173 -10.323 -12.117 3.827 -11.238 -12.076 0.124 -12.196 -11.339 -1.365 -12.489 -1.636 -10.878 ML 65 63 6 68 6 1 2 74 155 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 55 137 -13.377 -12.106 -8.014 -12.084 -0.008 -10.298 -6.743 -8.511 1.994 -7.504 D 67 63 6 68 6 0 0 67 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 75 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 75 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 36 C G - - MP 70 69 6 74 6 2 6 74 155 -15.606 -15.545 -0.000 -14.321 -14.601 -14.996 -11.918 -11.897 -11.517 -2.325 -6.883 -11.873 3.649 -10.867 -11.528 0.848 -11.791 -9.765 0.324 -11.905 -2.387 -10.296 ML 71 69 6 74 6 1 2 72 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 52 134 -13.377 -12.106 -8.014 -12.084 -7.218 -0.016 -8.459 -7.564 -9.541 1.997 D 73 69 6 74 6 0 0 64 145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 73 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 73 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 35 g a - - MP 76 75 6 80 4 2 5 72 153 -14.826 -15.033 -0.000 -13.447 2.017 1.259 -11.947 -4.526 0.569 0.042 -6.305 -11.340 2.768 -8.412 -12.172 -9.602 -7.290 -12.592 -2.602 -10.785 ML 77 75 6 80 4 1 1 71 152 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 68 149 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 46 127 -11.407 -11.088 -9.104 -0.004 IL 80 80 5 80 4 1 2 72 153 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 71 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 82 81 6 84 3 1 4 70 151 -4.030 -0.091 -14.390 1.976 -3.962 -10.899 -10.890 D 83 81 6 84 3 0 0 40 121 -13.516 -9.029 -0.003 IL 84 84 3 84 3 1 3 81 163 -0.327 -2.305 -11.430 0.000 0.000 0.000 0.000 [ MATL 20 ] 22 - G - - - ML 85 84 3 87 3 1 3 17 36 -15.736 -0.000 -14.390 -10.261 -12.021 1.999 -11.011 D 86 84 3 87 3 0 0 16 35 -13.516 -9.029 -0.003 IL 87 87 3 87 3 1 2 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - C - - - ML 88 87 3 90 3 1 2 16 35 -15.736 -0.144 -3.392 -3.930 1.806 -9.876 -1.198 D 89 87 3 90 3 0 0 15 34 -13.516 -9.029 -0.003 IL 90 90 3 90 3 1 2 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - C - - - ML 91 90 3 93 3 1 2 15 34 -3.885 -0.172 -4.480 -2.060 1.637 -9.097 -0.626 D 92 90 3 93 3 0 0 13 32 -14.645 -10.158 -0.001 IL 93 93 3 93 3 1 3 15 33 -6.444 -0.019 -9.144 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - a - - - ML 94 93 3 96 3 1 2 14 32 -15.525 -0.000 -14.179 0.752 -0.701 -5.883 0.751 D 95 93 3 96 3 0 0 13 32 -14.944 -0.002 -9.336 IL 96 96 3 96 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - G - - - ML 97 96 3 99 3 1 2 13 31 -6.047 -0.022 -14.501 -10.371 -12.131 1.999 -11.121 D 98 96 3 99 3 0 0 16 34 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 13 32 -4.656 -0.068 -7.356 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - G - - - ML 100 99 3 102 3 1 2 12 30 -15.847 -0.000 -14.501 -10.371 -12.131 1.999 -11.121 D 101 99 3 102 3 0 0 16 35 -6.174 -1.687 -0.566 IL 102 102 3 102 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - U - - - ML 103 102 3 105 3 1 1 10 29 -15.847 -0.299 -2.419 -1.926 0.404 -5.695 1.259 D 104 102 3 105 3 0 0 15 34 -6.174 -1.687 -0.566 IL 105 105 3 105 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - C - - - ML 106 105 3 108 3 1 1 9 27 -6.881 -0.012 -14.202 -10.898 1.930 -11.347 -2.399 D 107 105 3 108 3 0 0 8 27 -14.850 -0.120 -3.647 IL 108 108 3 108 3 1 1 9 27 -3.696 -0.135 -6.396 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - A - - - ML 109 108 3 111 3 1 1 8 26 -15.825 -0.000 -14.479 1.702 -1.637 -4.200 -1.430 D 110 108 3 111 3 0 0 10 28 -11.217 -0.030 -5.609 IL 111 111 3 111 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - A - - - ML 112 111 3 114 2 1 1 1 1 * 0.000 1.988 -4.941 -11.014 -11.053 D 113 111 3 114 2 0 0 0 0 * 0.000 IL 114 114 3 114 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 115 114 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 116 56 1 117 3 0 0 617 1353 -15.847 -0.000 -14.501 IL 117 117 2 117 3 1 1 618 1355 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 39 - G - - - ML 118 117 2 120 5 1 1 617 1353 -14.780 -0.000 -14.596 -14.808 -15.700 -3.396 -11.208 1.879 -2.147 D 119 117 2 120 5 0 0 613 1350 -4.959 -0.803 -4.221 -2.596 -2.508 IL 120 120 3 120 5 1 1 616 1353 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 40 119 c g - - MP 121 120 3 125 6 2 2 616 1352 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -10.049 -9.411 -10.001 1.939 -9.202 -10.779 2.786 -9.743 -9.986 1.794 -10.443 -0.545 0.087 -10.103 -4.682 -8.672 ML 122 120 3 125 6 1 1 613 1349 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 123 120 3 125 6 1 1 612 1349 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 124 120 3 125 6 0 0 606 1343 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 125 125 5 125 6 1 1 614 1351 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 126 126 6 126 5 1 1 614 1351 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 41 118 c g - - MP 127 126 6 131 6 2 2 614 1350 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -10.016 0.405 -10.016 1.468 -8.886 -10.859 2.834 -9.537 -9.875 0.166 -10.388 0.266 1.189 -10.198 -3.048 -4.465 ML 128 126 6 131 6 1 1 611 1347 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 6 131 6 1 1 610 1347 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 6 131 6 0 0 604 1341 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 612 1349 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 612 1349 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 42 117 G C - - MP 133 132 6 137 6 2 2 612 1348 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -11.345 -1.999 -11.396 1.597 -12.914 -12.405 -2.282 -11.714 -11.192 3.493 -11.669 -7.358 -8.249 0.240 -10.050 -3.925 ML 134 132 6 137 6 1 1 609 1346 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 608 1344 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 603 1340 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 610 1347 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 610 1347 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 43 116 G C - - MP 139 138 6 143 6 2 2 610 1346 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -13.617 -10.275 -15.793 -7.739 -15.211 -11.446 -0.110 -15.297 -11.641 3.879 -11.837 -1.520 -9.923 -11.910 -11.992 -14.819 ML 140 138 6 143 6 1 1 607 1344 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 605 1342 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 601 1338 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 608 1345 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 608 1345 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 44 115 A U - - MP 145 144 6 149 4 2 2 608 1344 -14.937 -15.144 -0.000 -13.558 -11.800 -10.409 -12.007 3.129 -14.106 -14.600 -1.960 -12.048 -11.516 2.802 -12.164 -5.842 -9.481 -13.158 -11.385 -10.607 ML 146 144 6 149 4 1 1 606 1342 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 602 1339 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 600 1337 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 607 1344 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 607 1343 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 45 - C - - - ML 151 150 6 153 3 1 1 606 1342 -15.847 -0.000 -14.501 -5.718 1.467 -9.906 0.281 D 152 150 6 153 3 0 0 598 1334 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 605 1342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 46 - U - - - ML 154 153 3 156 3 1 1 605 1341 -15.847 -0.000 -14.501 -12.339 -4.960 -13.468 1.988 D 155 153 3 156 3 0 0 594 1330 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 604 1341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 47 - g - - - ML 157 156 3 159 3 1 1 604 1340 -15.847 -0.000 -14.501 -0.217 -0.171 0.200 0.141 D 158 156 3 159 3 0 0 588 1325 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 603 1339 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 48 - a - - - ML 160 159 3 162 3 1 1 603 1339 -15.847 -0.000 -14.501 0.268 -0.225 -0.225 0.118 D 161 159 3 162 3 0 0 578 1315 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 601 1337 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 49 - g - - - ML 163 162 3 165 3 1 1 602 1338 -15.847 -0.000 -14.501 -0.135 -0.225 0.200 0.118 D 164 162 3 165 3 0 0 559 1296 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 599 1335 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 50 - G - - - ML 166 165 3 168 3 1 1 601 1337 -1.679 -0.540 -14.501 -0.474 -11.784 1.713 -11.007 D 167 165 3 168 3 0 0 475 1212 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 646 1383 -0.036 -5.340 -16.906 0.000 0.000 0.000 0.000 [ MATL 44 ] 114 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.375 -2.473 0.140 -3.010 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 46 ] - - - - - - S 173 54 1 174 3 0 5 59 97 -15.847 -0.000 -14.501 IL 174 174 2 174 3 1 6 61 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 120 - U - - - ML 175 174 2 177 2 1 5 59 97 -3.706 -0.115 -0.938 -6.041 -3.388 1.752 D 176 174 2 177 2 0 4 58 96 -8.445 -0.004 IL 177 177 3 177 2 1 5 59 97 -8.036 -0.006 0.000 0.000 0.000 0.000 [ BIF 48 ] - - - - - - B 178 177 3 179 211 0 4 58 96 [ BEGL 49 ] - - - - - - S 179 178 1 180 4 0 0 38 76 -0.163 -13.843 -13.250 -3.232 [ MATP 50 ] 122 139 C G - - MP 180 179 1 184 6 2 2 38 76 -15.554 -15.493 -0.008 -14.270 -7.494 -14.944 -10.264 -9.954 -10.210 -1.350 -5.536 -5.632 3.226 -4.912 -10.101 2.449 -10.575 -6.121 -0.549 -10.411 -6.538 -8.823 ML 181 179 1 184 6 1 1 37 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 1 184 6 1 1 38 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 1 184 6 0 0 37 75 -16.510 -15.209 -11.006 -11.688 -11.705 -0.002 IL 184 184 5 184 6 1 1 37 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 37 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 123 138 c g - - MP 186 185 6 190 6 2 2 36 74 -15.546 -15.485 -0.032 -14.262 -14.542 -5.537 0.400 -9.563 -9.864 -0.563 -5.502 -5.621 2.478 -5.559 -9.725 2.405 -10.236 -7.131 1.594 -10.046 -4.734 -8.444 ML 187 185 6 190 6 1 1 35 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 37 76 -9.698 -8.427 -4.336 -8.406 -3.539 -0.222 -2.863 -2.636 -3.640 1.857 D 189 185 6 190 6 0 0 37 75 -16.510 -15.209 -11.006 -11.688 -11.705 -0.002 IL 190 190 5 190 6 1 1 35 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 35 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 124 137 C G - - MP 192 191 6 196 4 2 2 33 72 -5.163 -4.471 -0.110 -13.356 -11.897 -11.892 -11.474 -1.664 -9.974 -11.812 3.749 -10.818 -11.493 -0.281 -11.744 -9.783 -0.548 -11.875 -0.481 -6.083 ML 193 191 6 196 4 1 1 35 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 4 1 1 33 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 195 191 6 196 4 0 0 37 75 -1.526 -2.771 -9.923 -0.985 IL 196 196 5 196 4 1 1 39 77 -0.694 -2.263 -2.528 -12.536 0.000 0.000 0.000 0.000 IR 197 197 6 197 3 1 1 18 33 -1.742 -0.642 -4.048 0.000 0.000 0.000 0.000 [ MATL 53 ] 130 - G - - - ML 198 197 6 200 3 1 1 11 29 -15.735 -0.000 -14.389 -3.532 -4.277 1.608 -0.299 D 199 197 6 200 3 0 0 11 29 -13.525 -9.038 -0.003 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 131 - U - - - ML 201 200 3 203 3 1 1 9 28 -15.735 -0.000 -14.389 -1.016 -0.933 -1.511 1.396 D 202 200 3 203 3 0 0 9 28 -13.525 -9.038 -0.003 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 132 - A - - - ML 204 203 3 206 3 1 1 8 26 -15.735 -0.002 -9.776 1.842 -1.642 -3.896 -5.217 D 205 203 3 206 3 0 0 8 27 -13.525 -9.038 -0.003 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 133 - G - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -5.490 -12.039 1.992 -11.012 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 [ BEGR 58 ] - - - - - - S 211 178 1 212 3 0 1 28 47 -15.847 -0.000 -14.501 IL 212 212 2 212 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 140 - U - - - ML 213 212 2 215 3 1 1 28 47 -15.847 -0.000 -14.501 -2.850 -4.086 -0.704 1.673 D 214 212 2 215 3 0 0 32 50 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 141 - U - - - ML 216 215 3 218 3 1 1 27 46 -15.847 -0.000 -14.501 -1.485 -1.397 -0.212 1.263 D 217 215 3 218 3 0 0 30 49 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 142 - C - - - ML 219 218 3 221 5 1 1 26 45 -14.780 -0.000 -14.596 -14.808 -15.700 -12.386 2.000 -13.233 -10.807 D 220 218 3 221 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 221 221 3 221 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 143 159 g c - - MP 222 221 3 226 6 2 2 25 44 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -9.707 -4.103 -9.527 0.980 -10.658 -10.127 1.888 -10.214 -9.961 2.889 -10.209 1.324 -2.017 -9.385 -7.733 -3.374 ML 223 221 3 226 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 224 221 3 226 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 225 221 3 226 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 226 226 5 226 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 227 227 6 227 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 144 158 u a - - MP 228 227 6 232 6 2 2 23 42 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -9.999 -9.705 -10.002 0.472 -4.333 -10.846 2.092 -3.563 -9.862 1.241 -10.376 -2.114 2.787 -6.943 -2.893 -0.807 ML 229 227 6 232 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 230 227 6 232 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 231 227 6 232 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 232 232 5 232 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 233 233 6 233 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 145 157 G C - - MP 234 233 6 238 6 2 2 21 40 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -13.475 -10.284 -15.164 -0.849 -15.055 -11.501 -0.327 -14.832 -11.637 3.872 -11.850 -8.183 -9.882 -11.946 -11.914 -14.019 ML 235 233 6 238 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 236 233 6 238 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 237 233 6 238 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 238 238 5 238 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 239 239 6 239 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 146 156 G C - - MP 240 239 6 244 6 2 2 19 38 -15.716 -15.655 -0.000 -14.431 -14.711 -15.106 -11.743 -9.664 -11.837 -1.187 -12.735 -7.058 -1.428 -12.418 -11.139 3.898 -11.354 -2.833 -3.141 -10.976 -6.430 -10.807 ML 241 239 6 244 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 242 239 6 244 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 243 239 6 244 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 244 244 5 244 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 245 245 6 245 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 147 155 G C - - MP 246 245 6 250 4 2 2 17 36 -14.937 -15.144 -0.000 -13.558 -13.065 -10.300 -14.043 -7.501 -14.926 -11.706 -9.548 -13.932 -11.618 3.986 -11.892 -8.101 -9.830 -12.074 -11.856 -2.888 ML 247 245 6 250 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 248 245 6 250 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 249 245 6 250 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 250 250 5 250 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 251 251 6 251 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 148 - U - - - ML 252 251 6 254 3 1 1 14 33 -15.847 -0.000 -14.501 -13.123 -11.748 -14.693 2.000 D 253 251 6 254 3 0 0 19 37 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 149 - U - - - ML 255 254 3 257 3 1 1 13 32 -15.847 -0.000 -14.501 -12.228 -4.493 -13.318 1.984 D 256 254 3 257 3 0 0 18 36 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 150 - C - - - ML 258 257 3 260 3 1 1 12 30 -15.847 -0.000 -14.501 -2.930 1.850 -2.937 -2.916 D 259 257 3 260 3 0 0 17 35 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 151 - A - - - ML 261 260 3 263 3 1 1 11 29 -15.847 -0.000 -14.501 1.112 -2.829 0.638 -2.822 D 262 260 3 263 3 0 0 16 34 -6.174 -1.687 -0.566 IL 263 263 3 263 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 152 - A - - - ML 264 263 3 266 3 1 1 9 28 -15.847 -0.000 -14.501 1.839 -2.828 -2.834 -2.827 D 265 263 3 266 3 0 0 15 33 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 153 - A - - - ML 267 266 3 269 3 1 1 8 26 -15.847 -0.000 -14.501 1.855 -3.990 -1.834 -4.665 D 268 266 3 269 3 0 0 13 32 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 154 - U - - - ML 270 269 3 272 2 1 1 1 1 * 0.000 -8.963 -4.821 -5.242 1.977 D 271 269 3 272 2 0 0 0 0 * 0.000 IL 272 272 3 272 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 74 ] - - - - - - E 273 272 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Leu ACC arch-Leu-r2-033017 LENG 85 MAXL 663 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:00:55 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Leu-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Leu-r2-033017.sto NSEQ 893 EFFN 5.256268 CKSUM 764118852 STATS LOCAL MSV -8.7240 0.71884 STATS LOCAL VITERBI -9.6879 0.71884 STATS LOCAL FORWARD -3.0050 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.60183 1.29711 1.19150 1.50784 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 0.00000 * 1 2.85132 4.03576 0.09964 3.94251 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 2 2.78676 0.55437 1.46800 2.01319 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.12893 4.48564 2.21006 1.46634 0.26236 1.09861 0.40547 3 1.57661 2.39649 0.48429 2.45164 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02532 4.38203 4.38203 1.46634 0.26236 2.46245 0.08908 4 1.58786 2.40927 0.50552 2.27725 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02532 4.38203 4.38203 1.46634 0.26236 2.46245 0.08908 5 2.45177 3.43207 0.16363 3.42716 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02532 4.38203 4.38203 1.46634 0.26236 0.18687 1.76931 6 1.84556 2.17472 0.51558 2.03048 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 7 2.36700 3.60823 0.16754 3.39926 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 8 3.36963 3.09062 3.89759 0.10555 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 9 1.03862 2.06870 1.44013 1.26298 9 a - - , 1.38629 1.38629 1.38629 1.38629 0.10825 3.33479 2.70339 0.76134 0.62931 1.09861 0.40547 10 1.97908 1.54610 0.67765 1.95957 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02416 4.42832 4.42832 1.46634 0.26236 2.07232 0.13455 11 2.99330 0.37702 2.27594 1.82467 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02416 4.42832 4.42832 1.46634 0.26236 2.07232 0.13455 12 2.48532 0.60735 1.86937 1.52469 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.02416 4.42832 4.42832 1.46634 0.26236 2.07232 0.13455 13 1.33482 1.49696 1.31444 1.40911 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.02416 4.42832 4.42832 1.46634 0.26236 2.07232 0.13455 14 0.09849 3.46972 3.45572 3.47025 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07161 2.86171 4.42832 1.59105 0.22779 2.07232 0.13455 15 3.57401 4.54665 0.05701 4.08839 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02416 4.42832 4.42832 1.46634 0.26236 2.07232 0.13455 16 2.65896 0.29890 3.38703 1.86731 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.09900 4.42832 2.49715 1.46634 0.26236 2.07232 0.13455 17 2.09136 0.50952 2.93085 1.50353 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.11265 2.78873 3.10020 0.37538 1.16165 2.62762 0.07499 18 1.06054 1.68038 2.25344 1.01503 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02689 4.32260 4.32260 1.46634 0.26236 0.13049 2.10102 19 3.66251 4.64365 0.05196 4.17707 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03451 3.78734 4.48564 0.80736 0.59066 1.09861 0.40547 20 3.66251 4.64365 0.05196 4.17707 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 21 1.94471 1.25397 2.68259 0.68674 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.17845 4.48564 1.88281 1.46634 0.26236 1.09861 0.40547 22 3.26115 0.16306 3.83955 2.40113 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03281 3.95515 4.33378 1.05997 0.42536 0.21348 1.64905 23 0.41517 2.17097 2.56000 1.90782 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02305 4.47454 4.47454 1.46634 0.26236 0.69820 0.68812 24 0.07415 3.80373 3.66626 3.74602 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08148 4.48564 2.70339 1.46634 0.26236 1.09861 0.40547 25 1.04807 1.62420 1.42929 1.54722 35 a - - > 1.38629 1.38629 1.38629 1.38629 0.02416 4.42832 4.42832 1.46634 0.26236 0.29007 1.37917 26 1.74366 1.97857 0.55729 2.17073 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 27 2.10795 2.37474 0.33052 2.70424 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 28 2.02339 0.77889 1.46115 1.73213 38 c - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 29 2.61145 3.50648 0.18602 2.71340 39 G - - , 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 30 1.62265 1.14737 1.26425 1.59600 40 c - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 31 1.56071 1.14407 1.51777 1.37717 41 c - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 32 1.56089 2.48857 0.52679 2.14967 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 33 2.63012 2.83501 0.18618 3.24188 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 34 0.97157 2.73933 0.71136 2.71926 44 g - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 35 2.48489 0.55508 3.14851 1.20491 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 36 3.38253 3.10996 3.91122 0.10378 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 37 1.32991 1.57418 1.45570 1.22050 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 38 1.19672 1.58782 1.61324 1.22348 48 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 39 1.30898 1.59298 1.45410 1.22767 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 40 1.72494 3.41111 0.29867 3.05742 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.29824 1.39996 4.48564 3.67950 0.02556 1.09861 0.40547 41 0.63790 2.30481 1.43497 2.01218 114 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 42 2.96727 0.78867 2.56848 0.87357 115 c - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 43 3.47166 0.22503 2.72763 2.25314 116 C - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 44 2.64900 0.54711 2.30412 1.38305 117 C - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 45 1.57286 1.63411 1.02509 1.43272 118 g - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 46 1.80309 1.42080 1.04787 1.41467 119 g - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 47 1.90251 2.50461 2.71003 0.35302 120 U - - , 1.38629 1.38629 1.38629 1.38629 0.06312 3.95190 3.17122 0.92910 0.50238 1.09861 0.40547 48 2.16833 0.92335 1.25212 1.59678 122 c - - < 1.38629 1.38629 1.38629 1.38629 0.08169 4.45448 2.70588 1.46634 0.26236 1.74442 0.19206 49 1.74872 1.24744 1.28517 1.33880 123 c - - < 1.38629 1.38629 1.38629 1.38629 0.04128 4.39771 3.57062 1.46634 0.26236 0.94880 0.48972 50 2.48811 0.54176 2.11713 1.53788 124 C - - < 1.38629 1.38629 1.38629 1.38629 0.07222 2.85375 4.41922 0.94416 0.49267 1.33648 0.30486 51 2.05932 2.62750 0.48344 1.69532 130 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03080 4.43460 3.99159 1.46634 0.26236 2.00357 0.14486 52 1.62527 1.77989 2.08294 0.67350 131 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42797 4.42797 1.46634 0.26236 2.07604 0.13402 53 0.26714 2.39751 2.70912 2.56531 132 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02500 4.42797 4.36242 1.46634 0.26236 1.63304 0.21733 54 3.41834 4.46320 0.06428 4.01907 133 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10604 2.66773 3.46717 0.44971 1.01560 1.94712 0.15395 55 1.85172 2.25351 0.45505 2.26733 137 G - - > 1.38629 1.38629 1.38629 1.38629 0.03813 4.41509 3.67623 1.46634 0.26236 2.20216 0.11717 56 1.42094 1.38804 1.12440 1.69228 138 g - - > 1.38629 1.38629 1.38629 1.38629 0.02482 4.40178 4.40178 1.46634 0.26236 2.31630 0.10385 57 1.80574 1.33930 0.84591 1.93482 139 g - - > 1.38629 1.38629 1.38629 1.38629 0.02482 4.40178 4.40178 1.46634 0.26236 0.21974 1.62315 58 2.11176 2.38488 2.02743 0.42281 140 U - - , 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 59 1.64639 1.89336 1.67253 0.75733 141 u - - , 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 60 4.00751 0.06544 4.50725 3.37730 142 C - - , 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 61 1.71115 1.74708 0.64220 2.12927 143 G - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 62 1.90715 1.23482 1.60747 1.02106 144 u - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 63 2.42187 2.83947 0.20931 3.17851 145 G - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 64 2.38089 2.98838 0.21340 3.00924 146 G - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 65 2.31544 3.08636 0.22361 2.88274 147 G - - < 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 66 3.58604 3.39962 4.12840 0.08035 148 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 67 3.33196 3.03312 3.85792 0.11093 149 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 68 2.59618 0.26428 3.06069 2.19975 150 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 69 0.79835 2.34792 1.14990 1.98273 151 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 70 0.28009 2.59032 2.56366 2.38311 152 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 71 0.24045 2.91576 2.35295 2.74142 153 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 72 2.96649 2.82193 3.37579 0.15685 154 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 73 3.20661 0.26413 2.89727 1.99171 155 C - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 74 3.24008 0.24873 2.83882 2.09919 156 C - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 75 3.41235 0.23880 2.72253 2.17372 157 C - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 76 1.18907 1.75736 1.10949 1.64368 158 g - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 77 2.38561 0.81992 1.63599 1.29923 159 c - - > 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 78 3.53645 0.20012 3.41076 2.12667 160 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 79 2.50096 0.59302 1.82716 1.58734 161 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 80 3.47391 0.22492 2.81623 2.20191 162 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 81 2.45717 0.60959 2.04074 1.42372 163 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 82 2.62766 0.55007 2.25222 1.40374 164 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02280 4.48564 4.48564 1.46634 0.26236 1.09861 0.40547 83 2.26056 1.53152 0.51092 2.53131 165 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03817 3.64268 4.48564 1.22846 0.34636 1.09861 0.40547 84 4.03534 0.12035 3.85981 2.59511 169 C - - ) 1.38629 1.38629 1.38629 1.38629 0.35858 1.23765 4.48564 1.10908 0.40027 1.09861 0.40547 85 0.05366 4.24798 3.89141 4.04360 173 A - - : 1.38629 1.38629 1.38629 1.38629 0.01146 4.47431 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Lys ACC arch-Lys-r2-033017 STATES 236 NODES 63 CLEN 74 W 612 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:12:50 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Lys-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Lys-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Lys-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Lys-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Lys-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Lys-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Lys-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 382 EFFN 382.000000 CKSUM 892897310 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.1177 0.71898 ECMLC 0.52829 -10.13469 2.04250 1600000 746542 0.001607 ECMGC 0.32978 -54.98458 -40.92249 1600000 41311 0.009683 ECMLI 0.55584 -9.20813 2.32465 1600000 729708 0.001644 ECMGI 0.33131 -51.52801 -37.77419 1600000 38110 0.010496 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 612 1270 -13.510 -14.756 -0.001 -11.209 IL 1 1 2 1 4 19 43 614 1272 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 44 615 1273 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 137 - G - - MR 3 2 3 5 5 25 53 614 1272 -2.401 -0.303 -13.376 -13.588 -14.480 -0.234 -10.232 1.654 -9.627 D 4 2 3 5 5 15 39 610 1268 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 23 51 615 1273 -0.592 -1.574 -13.068 -11.235 -12.341 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 133 G C - - MP 6 5 3 10 6 25 52 612 1270 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -12.453 -9.064 -14.845 -6.546 -14.072 -10.222 -8.364 -14.270 -10.433 3.997 -10.624 -6.999 -8.731 -10.691 -10.817 -13.974 ML 7 5 3 10 6 17 41 609 1267 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 41 609 1267 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 38 603 1261 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 42 611 1269 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 42 611 1269 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 132 G C - - MP 12 11 6 16 6 24 50 610 1268 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -12.422 -9.064 -14.672 -6.533 -14.063 -10.233 -8.366 -14.159 -10.432 3.973 -10.626 -1.859 -8.728 -10.698 -10.813 -13.724 ML 13 11 6 16 6 16 41 607 1265 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 40 607 1265 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 38 602 1260 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 41 609 1267 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 42 609 1267 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 131 G C - - MP 18 17 6 22 6 22 48 608 1266 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -12.453 -9.064 -14.845 -6.546 -14.072 -10.222 -8.364 -14.270 -10.433 3.997 -10.624 -6.999 -8.731 -10.691 -10.817 -13.974 ML 19 17 6 22 6 16 40 605 1263 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 40 605 1263 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 38 600 1258 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 41 607 1265 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 41 607 1265 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 130 C G - - MP 24 23 6 28 6 20 46 606 1264 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -11.545 -11.827 -10.862 -8.063 -9.213 -11.006 3.897 -10.128 -10.966 -8.035 -11.086 -10.231 -0.290 -11.379 -1.872 -9.768 ML 25 23 6 28 6 16 40 604 1262 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 40 603 1261 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 38 599 1257 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 41 605 1263 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 41 605 1263 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 129 C G - - MP 30 29 6 34 6 18 44 604 1262 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -11.378 -11.557 -10.769 -0.790 -9.160 -10.964 3.674 -10.056 -10.849 -7.643 -11.005 -2.868 0.870 -11.258 -0.550 -9.644 ML 31 29 6 34 6 15 40 602 1260 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 40 602 1260 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 37 598 1256 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 40 603 1261 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 41 603 1261 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 128 C G - - MP 36 35 6 40 6 16 42 602 1260 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -10.733 -10.681 -10.359 -1.843 -8.893 -10.741 3.424 -9.720 -10.360 1.847 -10.638 -8.514 0.381 -10.738 -3.754 -9.127 ML 37 35 6 40 6 14 39 600 1258 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 39 600 1258 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 37 598 1256 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 40 601 1259 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 40 601 1259 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 127 G C - - MP 42 41 6 46 4 14 40 600 1258 -13.715 -13.922 -0.000 -12.337 -11.995 -9.077 -13.169 -0.427 -13.831 -10.408 -8.349 -13.024 -10.412 3.890 -10.662 -2.239 -2.255 -10.806 -10.698 -11.899 ML 43 41 6 46 4 13 39 599 1257 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 38 598 1256 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 37 597 1255 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 39 600 1258 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 39 600 1258 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 12 38 598 1256 -14.626 -0.000 -13.280 -7.576 -5.091 -3.006 1.941 D 49 47 6 50 3 11 36 596 1254 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 38 599 1257 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 11 37 597 1255 -15.279 -0.000 1.849 -9.648 -1.338 -9.476 D 52 50 3 53 2 10 36 596 1254 -8.445 -0.004 IL 53 53 3 53 2 12 37 597 1255 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 10 36 596 1254 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 3 31 50 -14.626 -0.000 -13.280 IL 56 56 2 56 3 1 1 39 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 105 - A - - - ML 57 56 2 59 3 1 3 31 50 -14.626 -0.000 -13.280 1.278 -0.257 -3.123 -0.682 D 58 56 2 59 3 0 0 34 52 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 106 - G - - - ML 60 59 3 62 3 1 2 30 49 -14.626 -0.000 -13.280 -4.768 -4.448 1.806 -1.251 D 61 59 3 62 3 0 0 33 51 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 107 - G - - - ML 63 62 3 65 3 1 1 29 48 -14.626 -0.013 -6.859 -1.685 -9.772 1.869 -4.822 D 64 62 3 65 3 0 0 31 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 108 - U - - - ML 66 65 3 68 3 1 1 28 47 -14.613 -0.000 -13.267 -7.439 -0.739 -4.110 1.739 D 67 65 3 68 3 0 0 28 47 -9.339 -0.115 -3.730 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 109 - C - - - ML 69 68 3 71 5 1 1 27 46 -13.560 -0.000 -13.376 -13.588 -14.480 -3.025 1.953 -9.432 -8.534 D 70 68 3 71 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 110 126 G C - - MP 72 71 3 76 6 2 2 26 45 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -8.612 -7.253 -8.440 0.553 -9.549 -9.054 1.471 -9.104 -8.848 3.064 -9.108 1.283 -0.116 -8.311 -6.636 -7.396 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 111 125 c g - - MP 78 77 6 82 6 2 2 24 43 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -8.541 -2.274 -8.381 1.453 -9.033 -9.004 2.271 -8.893 -8.744 2.105 -9.028 0.974 0.857 -8.269 -6.235 -3.070 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 112 124 G C - - MP 84 83 6 88 6 2 2 22 41 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -12.453 -9.064 -14.845 -6.546 -14.072 -10.222 -8.364 -14.270 -10.433 3.997 -10.624 -6.999 -8.731 -10.691 -10.817 -13.974 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 113 123 G C - - MP 90 89 6 94 6 2 2 20 39 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -12.407 -9.071 -14.531 -6.536 -13.851 -10.239 -8.288 -14.015 -10.434 3.940 -10.629 -7.000 -8.680 -10.703 -0.673 -13.558 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 114 122 G C - - MP 96 95 6 100 4 2 2 18 37 -13.715 -13.922 -0.000 -12.337 -12.356 -9.067 -14.350 -1.897 -14.030 -10.256 -8.365 -13.940 -10.430 3.974 -10.632 -6.983 -8.718 -10.713 -10.798 -13.293 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 115 - U - - - ML 102 101 6 104 3 1 1 15 34 -14.626 -0.000 -13.280 -5.036 -9.352 -10.696 1.988 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 116 - U - - - ML 105 104 3 107 3 1 1 14 32 -14.626 -0.000 -13.280 -9.957 -2.895 -10.820 1.950 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 117 - C - - - ML 108 107 3 110 3 1 1 13 31 -14.626 -0.000 -13.280 -10.837 1.999 -11.525 -9.465 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 118 - A - - - ML 111 110 3 113 3 1 1 12 30 -14.626 -0.000 -13.280 1.452 -9.533 0.336 -9.450 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 119 - A - - - ML 114 113 3 116 3 1 1 10 29 -14.626 -0.000 -13.280 1.999 -10.601 -9.838 -9.938 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 120 - A - - - ML 117 116 3 119 3 1 1 8 27 -14.626 -0.000 -13.280 1.899 -3.094 -4.480 -3.197 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 121 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -7.536 -3.983 -4.407 1.958 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 17 574 1232 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 0 17 574 1232 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 1 28 44 -0.001 -12.628 -12.036 -12.676 [ MATP 15 ] 10 30 G C - - MP 127 126 1 131 6 2 4 28 44 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -12.417 -9.065 -14.644 -6.531 -14.060 -10.234 -8.366 -14.141 -10.432 3.963 -10.627 -1.367 -8.727 -10.699 -10.812 -13.686 ML 128 126 1 131 6 1 1 27 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 27 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 25 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 29 C G - - MP 133 132 6 137 6 2 3 26 42 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -11.507 -11.644 -10.859 -2.426 -9.248 -11.040 3.980 -10.142 -10.944 -7.909 -11.082 -9.827 -5.975 -11.393 -6.949 -9.755 ML 134 132 6 137 6 1 1 25 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 28 U A - - MP 139 138 6 143 6 2 3 24 40 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -11.534 -11.782 -10.860 -2.998 -9.219 -11.013 -0.933 -10.130 -10.960 -1.812 -11.084 -10.128 3.897 -11.380 -2.605 -9.763 ML 140 138 6 143 6 1 1 24 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 24 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 27 C G - - MP 145 144 6 149 4 2 2 22 38 -13.715 -5.023 -0.045 -12.337 -2.677 -11.826 -10.862 -8.062 -9.212 -11.006 3.626 -10.128 -10.965 -8.033 -11.086 -10.229 -0.015 -11.378 1.108 -1.570 ML 146 144 6 149 4 1 1 23 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 23 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 22 38 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 25 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 21 37 -4.479 -0.077 -7.179 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 1 20 36 -5.025 -0.045 -13.280 1.999 -10.601 -9.838 -9.938 D 152 150 6 153 3 0 0 20 38 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 37 -4.479 -0.077 -7.179 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 154 153 3 156 3 1 1 18 35 -14.626 -0.000 -13.280 -9.157 -10.925 1.999 -9.912 D 155 153 3 156 3 0 0 20 39 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - C - - - ML 157 156 3 159 3 1 1 17 34 -14.626 -0.045 -5.022 -2.437 1.296 -3.853 0.368 D 158 156 3 159 3 0 0 19 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - C - - - ML 160 159 3 162 3 1 1 16 33 -14.581 -0.009 -7.319 -3.397 1.697 -8.286 -0.599 D 161 159 3 162 3 0 0 15 33 -11.067 -6.580 -0.016 IL 162 162 3 162 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - - - ML 163 162 3 165 3 1 1 15 32 -14.572 -0.000 -13.226 1.367 -1.769 -4.819 0.126 D 164 162 3 165 3 0 0 15 32 -11.316 -0.028 -5.707 IL 165 165 3 165 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 1 14 30 -14.626 -0.000 -13.280 -9.157 -10.925 1.999 -9.912 D 167 165 3 168 3 0 0 16 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - - - ML 169 168 3 171 3 1 1 13 28 -14.626 -0.000 -13.280 -3.891 -10.931 1.975 -9.909 D 170 168 3 171 3 0 0 15 33 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - c - - - ML 172 171 3 174 3 1 1 12 25 -2.576 -0.265 -13.280 -1.857 0.946 -3.630 0.780 D 173 171 3 174 3 0 0 10 22 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 13 25 -2.100 -0.412 -6.018 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.999 -10.597 -9.833 -9.934 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 557 1215 -14.626 -0.000 -13.280 IL 180 180 2 180 3 1 1 558 1216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - G - - - ML 181 180 2 183 5 1 1 557 1215 -13.560 -0.000 -13.376 -13.588 -14.480 -1.334 -10.777 1.849 -9.832 D 182 180 2 183 5 0 0 554 1212 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 557 1215 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 104 g u - - MP 184 183 3 188 6 2 2 556 1214 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -8.818 -8.517 -8.817 1.207 -7.687 -9.660 1.691 -8.339 -8.677 -0.217 -9.190 2.497 1.513 -2.473 -0.157 -7.397 ML 185 183 3 188 6 1 1 553 1211 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 552 1210 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 546 1204 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 555 1213 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 555 1213 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 103 C G - - MP 190 189 6 194 6 2 2 554 1212 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -10.601 -10.515 -10.267 -1.409 -8.831 -10.688 3.727 -9.642 -10.253 0.117 -10.554 -8.306 0.246 -10.627 -4.993 -3.890 ML 191 189 6 194 6 1 1 551 1209 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 550 1208 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 545 1203 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 553 1211 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 553 1211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 102 G C - - MP 196 195 6 200 6 2 2 552 1210 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -10.834 -9.923 -10.538 -2.516 -9.652 -11.084 -0.231 -10.197 -10.518 3.523 -10.820 -7.502 1.762 -10.965 -7.292 -3.896 ML 197 195 6 200 6 1 1 549 1207 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 548 1206 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 543 1201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 551 1209 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 551 1209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 101 G C - - MP 202 201 6 206 6 2 2 550 1208 -14.506 -14.445 -0.000 -13.222 -13.502 -13.897 -12.453 -9.064 -14.845 -6.546 -14.072 -10.222 -8.364 -14.270 -10.433 3.997 -10.624 -6.999 -8.731 -10.691 -10.817 -13.974 ML 203 201 6 206 6 1 1 548 1205 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 546 1204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 542 1200 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 549 1207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 549 1207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 100 G C - - MP 208 207 6 212 4 2 2 548 1206 -13.715 -13.922 -0.000 -12.337 -11.297 -9.119 -11.791 2.187 -13.192 -10.952 -1.569 -11.779 -10.367 3.471 -10.754 -6.754 -8.411 -11.109 -10.328 -10.432 ML 209 207 6 212 4 1 1 546 1204 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 543 1201 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 541 1199 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 547 1205 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 547 1205 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - C - - - ML 214 213 6 216 3 1 1 546 1204 -14.626 -0.000 -13.280 -9.866 1.989 -10.290 -5.194 D 215 213 6 216 3 0 0 538 1196 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 546 1204 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - - - ML 217 216 3 219 3 1 1 545 1203 -14.626 -0.000 -13.280 -11.815 -10.489 -13.318 2.000 D 218 216 3 219 3 0 0 535 1193 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 544 1202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - u - - - ML 220 219 3 222 3 1 1 544 1202 -14.626 -0.000 -13.280 0.008 -0.008 -0.009 0.009 D 221 219 3 222 3 0 0 530 1188 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 543 1201 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - u - - - ML 223 222 3 225 3 1 1 543 1201 -14.626 -0.000 -13.280 0.008 -0.008 -0.009 0.009 D 224 222 3 225 3 0 0 521 1179 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 541 1199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - u - - - ML 226 225 3 228 3 1 1 542 1200 -14.626 -0.000 -13.280 0.008 -0.008 -0.009 0.009 D 227 225 3 228 3 0 0 503 1161 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 539 1197 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - - - ML 229 228 3 231 3 1 1 541 1199 -1.509 -0.625 -13.280 1.667 -9.513 -0.282 -9.426 D 230 228 3 231 3 0 0 424 1082 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 577 1235 -0.040 -5.180 -15.700 0.000 0.000 0.000 0.000 [ MATL 42 ] 99 - A - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 1.999 -10.601 -9.838 -9.938 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Lys ACC arch-Lys-r2-033017 LENG 74 MAXL 587 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:12:50 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Lys-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Lys-r2-033017.sto NSEQ 382 EFFN 3.249588 CKSUM 892897310 STATS LOCAL MSV -8.3793 0.71898 STATS LOCAL VITERBI -9.3049 0.71898 STATS LOCAL FORWARD -2.7412 0.71898 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57764 1.27522 1.15998 1.60606 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 0.00000 * 1 2.82938 3.61212 0.12210 3.54404 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 2 2.75218 3.59928 0.12941 3.49807 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 3 2.83757 3.62332 0.12073 3.55919 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 4 3.15264 0.30521 2.94405 1.78592 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 5 2.25155 0.67612 2.08708 1.33893 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 6 2.19573 0.84401 1.49146 1.45374 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 7 2.24745 3.12316 0.22747 2.92313 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 8 2.39009 2.40463 2.70811 0.28579 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 9 0.27554 2.94725 2.13945 2.65022 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 10 2.73759 3.59149 0.13096 3.49131 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 11 3.27708 0.19863 3.19658 2.28763 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 12 2.75638 1.67001 2.46143 0.41110 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 13 2.20644 0.75736 2.00285 1.25158 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 14 0.10176 3.63246 3.31992 3.37721 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05340 3.32472 4.13394 0.73397 0.65393 1.09861 0.40547 15 3.09281 4.01847 0.09541 3.58838 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 16 1.84142 0.84641 2.44378 1.12201 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05340 4.13394 3.32472 1.46634 0.26236 1.09861 0.40547 17 2.15965 0.50926 2.82954 1.49320 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03735 4.11377 3.89659 1.46634 0.26236 1.44601 0.26854 18 0.76774 1.91528 2.18545 1.28659 19 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03337 4.10980 4.10980 1.46634 0.26236 0.58980 0.80842 19 3.09281 4.01847 0.09541 3.58838 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 20 2.81001 3.83266 0.12167 3.42026 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 21 1.73314 1.05556 2.34677 0.96865 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.14978 2.09488 4.13394 0.44142 1.03036 1.09861 0.40547 22 0.10219 3.62844 3.31625 3.37278 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05340 3.32472 4.13394 0.73397 0.65393 1.09861 0.40547 23 1.62945 2.17629 0.59701 1.96581 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 24 0.47206 2.61431 1.50076 2.52446 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 25 2.55979 3.35913 0.17377 3.04859 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 26 3.63935 0.16966 3.40548 2.33727 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 27 2.03945 3.27963 0.25244 2.89394 31 G - - , 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 28 1.70233 1.41680 1.18171 1.31490 32 g - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 29 2.29866 0.65067 1.90726 1.47219 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 30 1.92062 1.91290 0.67392 1.62900 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 31 2.84430 3.63254 0.11961 3.57172 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 32 1.51331 2.53138 0.48117 2.49851 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 33 3.24700 0.13960 3.81608 2.66796 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 34 2.98500 2.88679 3.51488 0.14624 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 35 1.26223 1.53401 1.55520 1.23731 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 36 1.26223 1.53401 1.55520 1.23731 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 37 1.26223 1.53401 1.55520 1.23731 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 38 0.42458 2.74728 1.65200 2.40588 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.30206 1.40779 4.13394 3.56078 0.02883 1.09861 0.40547 39 0.10176 3.63246 3.31992 3.37721 99 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 40 2.74471 0.54603 2.36029 1.33905 100 C - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 41 3.75533 0.14332 3.47679 2.53546 101 C - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 42 1.80606 0.74996 1.75269 1.66070 102 c - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 43 1.69090 2.05014 0.57940 2.06596 103 G - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 44 1.55799 1.58784 1.22510 1.23324 104 g - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 45 0.80676 1.62639 2.11961 1.43976 105 a - - , 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 46 2.14821 2.75086 0.36317 2.08774 106 G - - , 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 47 2.12561 3.25384 0.24521 2.82228 107 G - - , 1.38629 1.38629 1.38629 1.38629 0.03830 4.13394 3.83699 1.46634 0.26236 1.09861 0.40547 48 2.18576 1.79211 2.63619 0.43176 108 U - - , 1.38629 1.38629 1.38629 1.38629 0.03275 4.12838 4.12838 1.46634 0.26236 0.91074 0.51454 49 2.65550 0.21366 3.41295 2.41718 109 C - - , 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 50 1.74149 1.79156 0.67930 1.89000 110 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 51 1.64915 1.42792 1.04206 1.53595 111 g - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 52 2.84400 3.63213 0.11966 3.57117 112 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 53 2.25874 2.66669 0.30019 2.46093 113 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 54 2.67943 3.56315 0.13664 3.48150 114 G - - < 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 55 2.69287 2.70493 3.26622 0.18960 115 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 56 2.66587 2.41649 3.18375 0.22340 116 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 57 3.31944 0.12673 3.88645 2.77518 117 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 58 0.57008 2.66456 1.33168 2.29403 118 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 59 0.10176 3.63246 3.31992 3.37721 119 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 60 0.27608 2.61032 2.60534 2.36596 120 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 61 2.46700 2.40727 2.89283 0.26178 121 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 62 3.66721 0.16261 3.40123 2.39473 122 C - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 63 2.86382 0.34295 2.35199 1.97982 123 C - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 64 3.74769 0.14379 3.47315 2.53404 124 C - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 65 1.74512 1.22192 1.29364 1.36085 125 c - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 66 2.10936 0.84123 1.65145 1.36362 126 c - - > 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 67 3.12463 0.27036 2.94569 1.96343 127 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 68 1.66565 1.59985 0.75601 1.96989 128 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 69 1.59314 2.28466 0.57560 2.02088 129 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 70 2.06471 3.10238 0.25638 2.91221 130 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 71 3.73011 0.14488 3.46471 2.53074 131 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 72 3.66923 0.16207 3.43526 2.38700 132 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03256 4.13394 4.13394 1.46634 0.26236 1.09861 0.40547 73 3.70466 0.14649 3.45236 2.52589 133 C - - ) 1.38629 1.38629 1.38629 1.38629 0.16882 1.97101 4.13394 1.13025 0.39001 1.09861 0.40547 74 1.50536 2.93036 0.43675 2.54403 137 G - - : 1.38629 1.38629 1.38629 1.38629 0.13268 2.08543 * 1.13482 0.38784 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Met ACC arch-Met-r2-033017 STATES 344 NODES 99 CLEN 110 W 419 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:19:18 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Met-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Met-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Met-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Met-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Met-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Met-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Met-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 156 EFFN 156.000000 CKSUM 2973659068 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.9194 0.71844 ECMLC 0.51355 -10.98495 1.18035 1600000 620056 0.001935 ECMGC 0.32376 -55.33889 -40.51135 1600000 48634 0.008225 ECMLI 0.51118 -10.70703 1.43798 1600000 596224 0.002013 ECMGI 0.33803 -50.52902 -36.58813 1600000 44529 0.008983 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 419 790 -12.229 -13.474 -0.002 -9.928 IL 1 1 2 1 4 19 46 421 792 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 48 421 792 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 154 - A - - MR 3 2 3 5 5 25 54 420 791 -2.067 -0.394 -12.097 -12.309 -13.201 1.998 -9.384 -8.621 -8.734 D 4 2 3 5 5 15 42 416 788 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 23 54 421 792 -0.599 -1.563 -12.132 -10.300 -11.406 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 150 G C - - MP 6 5 3 10 6 25 53 418 789 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -11.182 -7.813 -13.482 -5.287 -12.802 -8.977 -7.109 -12.945 -9.181 3.994 -9.374 -5.745 -7.475 -9.444 -9.557 -12.562 ML 7 5 3 10 6 17 44 415 787 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 44 415 786 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 40 409 781 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 45 417 788 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 46 417 788 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 149 C G - - MP 12 11 6 16 6 24 51 416 787 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.262 -10.541 -9.580 -6.778 -7.931 -9.724 3.951 -8.846 -9.683 -6.750 -9.803 -8.941 -1.074 -10.097 -5.633 -8.485 ML 13 11 6 16 6 17 43 413 785 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 43 413 784 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 40 408 779 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 45 415 786 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 45 415 786 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 148 C G - - MP 18 17 6 22 6 22 49 414 785 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.258 -10.526 -9.579 -6.763 -7.932 -9.726 3.857 -8.846 -9.681 -1.971 -9.802 -8.907 0.272 -10.096 -5.635 -8.483 ML 19 17 6 22 6 16 43 412 783 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 43 411 782 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 39 407 778 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 44 413 784 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 45 413 784 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 147 G C - - MP 24 23 6 28 6 21 47 412 783 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.494 -8.526 -10.401 -5.631 -9.003 -9.394 2.336 -9.766 -9.372 3.443 -9.576 -6.412 -5.563 -9.781 -6.655 -9.268 ML 25 23 6 28 6 16 43 410 781 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 42 409 781 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 39 405 777 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 44 411 782 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 44 411 782 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 146 G C - - MP 30 29 6 34 6 19 45 410 781 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -8.388 -7.042 -8.218 0.901 -8.570 -8.705 1.857 -8.561 -8.398 3.334 -8.677 -4.671 -1.595 -8.156 -5.929 -7.134 ML 31 29 6 34 6 15 42 408 779 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 42 408 779 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 39 404 776 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 43 409 780 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 43 409 780 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 145 G C - - MP 36 35 6 40 6 17 43 408 779 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -8.391 -6.798 -8.316 -0.948 -9.400 -8.523 1.341 -8.896 -8.299 3.620 -8.576 -1.358 -2.245 -8.033 -6.496 -7.245 ML 37 35 6 40 6 14 41 406 778 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 41 406 777 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 38 404 775 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 42 407 779 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 42 407 778 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 144 G C - - MP 42 41 6 46 4 15 41 406 777 -12.432 -12.639 -0.001 -11.053 -9.970 -7.688 -10.404 0.750 -11.625 -9.287 -2.414 -10.601 -9.018 3.701 -9.332 0.136 -6.733 -9.412 -8.646 -9.172 ML 43 41 6 46 4 13 40 405 776 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 39 404 776 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 38 403 774 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 41 406 777 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 41 406 777 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 13 39 404 775 -13.344 -0.000 -11.998 -8.620 -4.740 -9.476 1.985 D 49 47 6 50 3 11 38 402 774 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 40 405 776 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 12 38 403 774 -13.994 -0.000 0.893 -8.212 1.095 -8.085 D 52 50 3 53 2 11 37 402 773 -8.445 -0.004 IL 53 53 3 53 2 12 39 404 775 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 11 37 402 773 [ BEGR 80 ] - - - - - - S 55 54 1 56 3 0 0 32 51 -13.344 -0.000 -11.998 IL 56 56 2 56 3 1 1 39 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 81 ] 122 - A - - - ML 57 56 2 59 3 1 1 32 51 -13.344 -0.000 -11.998 1.829 -7.520 -7.874 -1.192 D 58 56 2 59 3 0 0 34 52 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 82 ] 123 - G - - - ML 60 59 3 62 3 1 1 31 50 -13.344 -0.000 -11.998 -2.949 -4.148 1.808 -1.678 D 61 59 3 62 3 0 0 33 51 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 83 ] 124 - G - - - ML 63 62 3 65 3 1 1 30 49 -13.344 -0.000 -11.998 0.314 -8.277 1.459 -7.978 D 64 62 3 65 3 0 0 32 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 84 ] 125 - U - - - ML 66 65 3 68 3 1 1 29 48 -13.344 -0.000 -11.998 -7.733 -1.203 -8.507 1.831 D 67 65 3 68 3 0 0 30 49 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 85 ] 126 - C - - - ML 69 68 3 71 5 1 1 28 46 -12.281 -0.001 -12.097 -12.309 -13.201 -9.185 1.998 -9.745 -8.028 D 70 68 3 71 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 86 ] 127 143 G C - - MP 72 71 3 76 6 2 2 27 45 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -8.169 -6.730 -8.060 -1.391 -8.914 -8.527 2.066 -8.560 -8.187 3.395 -8.489 -1.595 -0.934 -7.922 -6.101 -6.970 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 87 ] 128 142 c g - - MP 78 77 6 82 6 2 2 25 43 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -7.642 -7.149 -7.622 1.648 -6.662 -8.453 2.738 -7.251 -7.534 1.844 -8.025 -2.132 1.175 -7.778 -4.111 -6.244 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 88 ] 129 141 G C - - MP 84 83 6 88 6 2 2 23 41 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -11.182 -7.813 -13.482 -5.287 -12.802 -8.977 -7.109 -12.945 -9.181 3.994 -9.374 -5.745 -7.475 -9.444 -9.557 -12.562 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 89 ] 130 140 G C - - MP 90 89 6 94 6 2 2 21 39 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.859 -7.824 -12.212 -1.948 -12.511 -9.098 -7.046 -11.995 -9.166 3.836 -9.398 -5.691 0.505 -9.519 -9.407 -10.986 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 90 ] 131 139 G C - - MP 96 95 6 100 4 2 2 19 37 -12.432 -12.639 -0.001 -11.053 -11.182 -7.813 -13.482 -5.287 -12.802 -8.977 -7.109 -12.945 -9.181 3.994 -9.374 -5.745 -7.475 -9.444 -9.557 -12.562 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 91 ] 132 - U - - - ML 102 101 6 104 3 1 1 16 35 -13.344 -0.000 -11.998 -3.021 -2.836 -6.906 1.899 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 92 ] 133 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.344 -0.000 -11.998 -10.259 -9.083 -11.586 1.999 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 93 ] 134 - C - - - ML 108 107 3 110 3 1 1 14 32 -13.344 -0.000 -11.998 -9.185 1.998 -9.745 -8.028 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 94 ] 135 - G - - - ML 111 110 3 113 3 1 1 12 31 -13.344 -0.000 -11.998 0.294 -8.285 1.468 -7.978 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 95 ] 136 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.344 -0.000 -11.998 1.450 -7.501 0.196 -3.094 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 96 ] 137 - A - - - ML 117 116 3 119 3 1 1 9 28 -13.344 -0.000 -11.998 1.700 -7.124 -0.701 -2.963 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 97 ] 138 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -2.028 -1.780 0.308 1.154 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 98 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 18 380 751 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 1 18 380 751 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 1 28 46 -0.002 -11.363 -10.771 -11.411 [ MATP 15 ] 10 28 G C - - MP 127 126 1 131 6 2 3 28 46 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.980 -7.817 -12.618 -2.364 -12.716 -9.050 -7.110 -12.333 -9.171 3.933 -9.388 -0.973 -7.446 -9.490 -9.517 -11.446 ML 128 126 1 131 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G - - MP 133 132 6 137 6 2 3 26 44 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -12.431 -12.675 -8.343 -10.821 -6.581 -7.836 3.997 -12.653 -13.416 -10.251 -7.862 -12.202 -8.469 -13.054 -9.525 -12.096 ML 134 132 6 137 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 U A - - MP 139 138 6 143 6 2 3 24 42 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.262 -10.541 -9.580 -6.778 -7.931 -9.724 1.968 -8.846 -9.683 -6.750 -9.803 -8.941 3.589 -10.096 -5.633 -8.485 ML 140 138 6 143 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 c g - - MP 145 144 6 149 4 2 3 21 40 -12.432 -12.639 -0.001 -11.053 -10.262 -10.543 -9.579 -6.780 -7.930 -9.724 2.557 -8.845 -9.683 -6.752 -9.803 -8.947 -0.423 -10.096 2.283 2.160 ML 146 144 6 149 4 1 1 26 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 2 19 37 -13.344 -0.000 -11.998 1.998 -9.384 -8.621 -8.734 D 152 150 6 153 3 0 0 21 40 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 2 18 36 -13.344 -0.000 -11.998 -7.900 -9.674 1.997 -8.661 D 155 153 3 156 3 0 0 20 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 16 35 -13.344 -0.032 -5.519 -2.966 1.674 -2.863 -0.878 D 158 156 3 159 3 0 0 19 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - - - ML 160 159 3 162 3 1 1 15 34 -1.252 -0.786 -11.966 -3.887 0.836 -3.491 1.042 D 161 159 3 162 3 0 0 14 33 -9.391 -0.111 -3.783 IL 162 162 3 162 3 1 1 15 33 -4.874 -0.052 -9.525 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 163 162 3 165 3 1 1 14 32 -13.344 -0.000 -11.998 -7.900 -9.674 1.997 -8.661 D 164 162 3 165 3 0 0 16 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - G - - - ML 166 165 3 168 3 1 1 12 31 -13.344 -0.000 -11.998 -7.900 -9.674 1.997 -8.661 D 167 165 3 168 3 0 0 15 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - - - ML 169 168 3 171 3 1 1 11 30 -13.344 -0.197 -2.969 -0.071 -1.440 -3.477 1.373 D 170 168 3 171 3 0 0 14 33 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - U - - - ML 172 171 3 174 3 1 1 9 28 -13.147 -0.001 -11.801 -8.156 0.862 -9.206 1.122 D 173 171 3 174 3 0 0 9 28 -11.820 -0.020 -6.212 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.700 -7.555 -0.501 -4.708 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 1 363 734 -13.344 -0.000 -11.998 IL 180 180 2 180 3 1 1 364 735 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - G - - - ML 181 180 2 183 5 1 2 363 734 -12.281 -0.001 -12.097 -12.309 -13.201 -7.900 -9.674 1.997 -8.661 D 182 180 2 183 5 0 0 360 731 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 363 734 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 121 C G - - MP 184 183 3 188 6 2 3 362 733 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.252 -10.526 -9.574 -1.539 -7.927 -9.721 3.803 -8.841 -9.676 -6.725 -9.798 -8.913 0.424 -10.089 -1.593 -8.477 ML 185 183 3 188 6 1 1 359 730 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 359 730 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 354 725 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 361 732 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 361 732 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 120 C G - - MP 190 189 6 194 6 2 3 360 731 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -9.722 -9.630 -9.280 0.176 -7.800 -9.625 3.683 -8.629 -9.294 -0.825 -9.539 -7.472 0.499 -9.731 -5.452 -8.085 ML 191 189 6 194 6 1 1 357 729 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 357 728 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 352 723 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 359 730 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 359 730 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 119 G C - - MP 196 195 6 200 6 2 3 358 729 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -8.204 -6.935 -8.022 1.719 -8.368 -8.638 2.057 -8.365 -8.284 3.009 -8.574 -4.547 -1.343 -8.014 -5.726 -6.933 ML 197 195 6 200 6 1 1 356 727 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 355 726 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 351 722 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 357 728 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 357 728 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 118 G C - - MP 202 201 6 206 6 2 3 356 727 -13.253 -13.192 -0.001 -11.969 -12.248 -12.643 -10.793 -8.108 -11.267 -5.428 -9.967 -9.170 1.781 -10.656 -9.267 3.643 -9.468 -6.017 -6.265 -9.600 -7.530 -10.148 ML 203 201 6 206 6 1 1 354 725 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 353 724 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 350 721 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 355 726 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 355 726 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 117 A U - - MP 208 207 6 212 4 2 2 354 725 -12.432 -12.639 -0.001 -11.053 -9.252 -7.910 -9.447 3.535 -11.586 -12.712 -7.042 -9.490 -9.006 2.061 -9.675 -2.318 -6.968 -10.746 -8.874 -8.046 ML 209 207 6 212 4 1 1 352 724 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 351 722 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 349 721 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 354 725 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 353 724 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - C - - - ML 214 213 6 216 3 1 1 352 723 -13.344 -0.000 -11.998 -9.185 1.998 -9.745 -8.028 D 215 213 6 216 3 0 0 348 719 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 352 723 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - - - ML 217 216 3 219 3 1 1 351 722 -13.344 -0.000 -11.998 -8.541 -4.546 -9.387 1.983 D 218 216 3 219 3 0 0 346 717 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 351 722 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - u - - - ML 220 219 3 222 3 1 1 350 721 -13.344 -0.000 -11.998 0.018 -0.019 -0.021 0.021 D 221 219 3 222 3 0 0 344 715 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 350 721 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - u - - - ML 223 222 3 225 3 1 1 349 720 -13.344 -0.000 -11.998 0.018 -0.019 -0.021 0.021 D 224 222 3 225 3 0 0 341 712 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 349 720 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - u - - - ML 226 225 3 228 3 1 1 348 719 -13.344 -0.000 -11.998 0.018 -0.019 -0.021 0.021 D 227 225 3 228 3 0 0 337 708 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 347 719 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - - - ML 229 228 3 231 3 1 1 347 718 -13.344 -0.286 -2.478 1.998 -9.384 -8.621 -8.734 D 230 228 3 231 3 0 0 329 700 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 349 721 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - G - - - ML 232 231 3 234 3 1 1 350 721 -13.059 -0.001 -11.713 -1.937 -0.307 1.541 -5.628 D 233 231 3 234 3 0 0 288 659 -12.303 -7.816 -0.007 IL 234 234 3 234 3 1 1 348 720 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - G - - - ML 235 234 3 237 3 1 1 349 720 -13.059 -0.001 -11.713 -6.940 -3.266 1.935 -3.951 D 236 234 3 237 3 0 0 286 657 -12.303 -7.816 -0.007 IL 237 237 3 237 3 1 1 347 719 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - G - - - ML 238 237 3 240 3 1 1 348 719 -13.059 -0.001 -11.713 -2.942 -3.222 1.877 -3.495 D 239 237 3 240 3 0 0 284 655 -12.303 -7.816 -0.007 IL 240 240 3 240 3 1 1 346 718 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - U - - - ML 241 240 3 243 3 1 1 347 718 -13.059 -0.001 -11.713 -0.172 -0.875 -1.826 1.192 D 242 240 3 243 3 0 0 282 653 -12.303 -7.816 -0.007 IL 243 243 3 243 3 1 1 345 717 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - u - - - ML 244 243 3 246 3 1 1 346 717 -13.059 -0.001 -11.713 -0.151 0.313 -1.361 0.554 D 245 243 3 246 3 0 0 279 651 -12.303 -7.816 -0.007 IL 246 246 3 246 3 1 1 344 716 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - u - - - ML 247 246 3 249 3 1 1 345 716 -13.059 -0.034 -5.413 -0.210 -0.286 -0.566 0.714 D 248 246 3 249 3 0 0 277 648 -12.303 -7.816 -0.007 IL 249 249 3 249 3 1 1 344 715 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - u - - - ML 250 249 3 252 3 1 1 344 715 -13.025 -0.034 -5.416 -0.764 0.064 -0.693 0.805 D 251 249 3 252 3 0 0 274 645 -12.447 -7.960 -0.006 IL 252 252 3 252 3 1 1 343 715 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - u - - - ML 253 252 3 255 3 1 1 344 715 -12.991 -0.010 -7.133 0.301 -0.917 -0.579 0.650 D 254 252 3 255 3 0 0 271 643 -12.574 -8.087 -0.006 IL 255 255 3 255 3 1 1 343 714 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - c - - - ML 256 255 3 258 3 1 1 343 714 -12.981 -0.001 -11.635 -0.023 0.618 -0.946 -0.057 D 257 255 3 258 3 0 0 269 640 -12.609 -8.122 -0.005 IL 258 258 3 258 3 1 1 342 713 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - a - - - ML 259 258 3 261 3 1 1 342 713 -12.981 -0.001 -11.635 0.585 -0.102 0.091 -0.990 D 260 258 3 261 3 0 0 266 637 -12.609 -8.122 -0.005 IL 261 261 3 261 3 1 1 341 712 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - a - - - ML 262 261 3 264 3 1 1 341 712 -12.981 -0.040 -5.193 0.740 -0.011 -0.441 -0.734 D 263 261 3 264 3 0 0 262 633 -12.609 -8.122 -0.005 IL 264 264 3 264 3 1 1 340 711 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - c - - - ML 265 264 3 267 3 1 1 340 712 -12.942 -0.001 -11.596 -0.116 0.193 -0.317 0.179 D 266 264 3 267 3 0 0 258 630 -12.738 -8.251 -0.005 IL 267 267 3 267 3 1 1 339 710 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 53 - u - - - ML 268 267 3 270 3 1 1 339 711 -12.942 -0.001 -11.596 0.002 0.067 -0.217 0.125 D 269 267 3 270 3 0 0 254 625 -12.738 -8.251 -0.005 IL 270 270 3 270 3 1 1 338 709 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - g - - - ML 271 270 3 273 3 1 1 338 710 -12.942 -0.001 -11.596 -0.732 0.083 0.638 -0.354 D 272 270 3 273 3 0 0 249 620 -12.738 -8.251 -0.005 IL 273 273 3 273 3 1 1 337 708 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - g - - - ML 274 273 3 276 3 1 1 337 709 -12.942 -0.266 -2.570 0.217 0.041 0.256 -0.701 D 275 273 3 276 3 0 0 243 614 -12.738 -8.251 -0.005 IL 276 276 3 276 3 1 1 340 711 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - g - - - ML 277 276 3 279 3 1 1 340 711 -12.676 -0.090 -4.056 -1.414 -0.498 0.909 0.056 D 278 276 3 279 3 0 0 231 603 -13.340 -8.853 -0.003 IL 279 279 3 279 3 1 1 340 711 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - g - - - ML 280 279 3 282 3 1 1 340 712 -12.587 -0.149 -3.350 -0.818 -0.097 0.710 -0.215 D 281 279 3 282 3 0 0 217 589 -13.478 -8.991 -0.003 IL 282 282 3 282 3 1 1 341 712 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 58 - c - - - ML 283 282 3 285 3 1 1 341 713 -0.283 -2.491 -11.093 -1.115 0.969 -0.266 -0.417 D 284 282 3 285 3 0 0 153 525 -13.668 -2.894 -0.209 IL 285 285 3 285 3 1 1 344 716 -0.072 -4.371 -13.939 0.000 0.000 0.000 0.000 [ MATL 60 ] 98 - c - - - ML 286 285 3 288 3 1 1 29 48 -12.598 -0.001 -11.252 -0.713 0.522 -0.021 -0.046 D 287 285 3 288 3 0 0 27 46 -13.463 -2.592 -0.262 IL 288 288 3 288 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 99 - c - - - ML 289 288 3 291 3 1 1 28 47 -12.751 -0.001 -11.405 -0.674 0.819 -0.079 -0.596 D 290 288 3 291 3 0 0 26 45 -13.204 -2.376 -0.309 IL 291 291 3 291 3 1 1 34 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 100 - g - - - ML 292 291 3 294 3 1 1 27 46 -12.885 -0.001 -11.539 -0.420 -0.506 0.956 -0.715 D 293 291 3 294 3 0 0 25 44 -12.900 -2.221 -0.349 IL 294 294 3 294 3 1 1 33 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 101 - c - - - ML 295 294 3 297 3 1 1 26 45 -12.996 -0.001 -11.650 -1.777 0.962 0.230 -0.769 D 296 294 3 297 3 0 0 23 42 -12.557 -8.070 -0.006 IL 297 297 3 297 3 1 1 32 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 102 - c - - - ML 298 297 3 300 3 1 1 25 44 -12.996 -0.001 -11.650 -1.113 0.850 -0.581 0.093 D 299 297 3 300 3 0 0 23 41 -12.557 -3.832 -0.105 IL 300 300 3 300 3 1 1 31 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 103 - u - - - ML 301 300 3 303 3 1 1 24 42 -13.022 -0.001 -11.676 -0.382 -0.080 -0.440 0.632 D 302 300 3 303 3 0 0 22 40 -12.458 -7.971 -0.006 IL 303 303 3 303 3 1 1 30 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 104 - c - - - ML 304 303 3 306 3 1 1 23 41 -13.022 -0.001 -11.676 -0.028 0.538 0.224 -1.326 D 305 303 3 306 3 0 0 21 39 -12.458 -3.860 -0.103 IL 306 306 3 306 3 1 1 29 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 105 - g - - - ML 307 306 3 309 3 1 1 22 40 -13.046 -0.001 -11.700 -0.326 -1.375 0.976 -0.234 D 308 306 3 309 3 0 0 20 38 -12.361 -7.874 -0.006 IL 309 309 3 309 3 1 1 28 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 106 - c - - - ML 310 309 3 312 3 1 1 21 39 -13.046 -0.001 -11.700 -0.020 0.195 -0.180 -0.021 D 311 309 3 312 3 0 0 19 37 -12.361 -5.133 -0.042 IL 312 312 3 312 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 107 - a - - - ML 313 312 3 315 3 1 1 20 38 -13.054 -0.001 -11.708 0.564 -1.730 -0.260 0.470 D 314 312 3 315 3 0 0 18 36 -12.325 -4.557 -0.063 IL 315 315 3 315 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 108 - C - - - ML 316 315 3 318 3 1 1 19 37 -13.066 -0.001 -11.720 -2.963 1.773 -3.226 -1.525 D 317 315 3 318 3 0 0 17 35 -12.269 -2.934 -0.203 IL 318 318 3 318 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 109 - C - - - ML 319 318 3 321 3 1 1 17 36 -13.105 -0.001 -11.759 -2.420 1.831 -3.262 -2.730 D 320 318 3 321 3 0 0 16 34 -12.074 -2.845 -0.217 IL 321 321 3 321 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 110 - U - - - ML 322 321 3 324 3 1 1 16 35 -13.140 -0.001 -11.794 -3.091 -3.989 -2.036 1.838 D 323 321 3 324 3 0 0 15 33 -11.867 -7.380 -0.009 IL 324 324 3 324 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 111 - G - - - ML 325 324 3 327 3 1 1 15 33 -13.140 -0.001 -11.794 -4.034 -9.448 1.976 -8.440 D 326 324 3 327 3 0 0 14 32 -11.867 -7.380 -0.009 IL 327 327 3 327 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 112 - G - - - ML 328 327 3 330 3 1 1 14 32 -13.140 -0.001 -11.794 0.719 -7.977 1.230 -7.808 D 329 327 3 330 3 0 0 13 31 -11.867 -7.380 -0.009 IL 330 330 3 330 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 113 - G - - - ML 331 330 3 333 3 1 1 13 31 -13.140 -0.001 -11.794 -7.703 -9.477 1.997 -8.465 D 332 330 3 333 3 0 0 12 30 -11.867 -7.380 -0.009 IL 333 333 3 333 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 114 - A - - - ML 334 333 3 336 3 1 1 11 30 -13.140 -0.001 -11.794 1.729 -2.185 -3.543 -1.400 D 335 333 3 336 3 0 0 11 29 -11.867 -7.380 -0.009 IL 336 336 3 336 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 115 - c - - - ML 337 336 3 339 3 1 1 9 28 -13.140 -0.001 -11.794 0.236 0.571 -1.015 -0.249 D 338 336 3 339 3 0 0 9 28 -11.867 -0.019 -6.259 IL 339 339 3 339 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 78 ] 116 - A - - - ML 340 339 3 342 2 1 1 1 1 * 0.000 1.998 -9.384 -8.621 -8.734 D 341 339 3 342 2 0 0 0 0 * 0.000 IL 342 342 3 342 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 79 ] - - - - - - E 343 342 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Met ACC arch-Met-r2-033017 LENG 110 MAXL 412 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:19:18 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Met-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Met-r2-033017.sto NSEQ 156 EFFN 3.051636 CKSUM 2973659068 STATS LOCAL MSV -9.4133 0.71844 STATS LOCAL VITERBI -10.4885 0.71844 STATS LOCAL FORWARD -3.0907 0.71844 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52424 1.35331 1.19515 1.50881 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 0.00000 * 1 2.77630 3.53513 0.13086 3.46621 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 2 3.30824 0.23347 3.11347 2.06205 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 3 2.91402 0.38174 2.57810 1.67584 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 4 2.15015 1.47148 0.64222 2.05712 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 5 1.75476 1.67040 0.70121 1.94565 5 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 6 1.91988 1.94043 0.51827 2.16994 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 7 1.88379 2.73100 0.33931 2.65117 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 8 2.78893 2.65741 3.31130 0.18403 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 9 0.90603 2.61863 0.88042 2.22227 9 g - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 10 2.56158 3.42851 0.15765 3.31767 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 11 3.53481 0.17212 3.34226 2.36868 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 12 2.74876 1.13779 2.51140 0.62678 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 13 2.23361 1.07604 2.05857 0.85736 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 14 0.11054 3.55425 3.24860 3.29095 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 15 3.01669 3.93398 0.10375 3.50595 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 16 2.00910 0.57416 2.51827 1.50456 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04716 4.13843 3.50280 1.46634 0.26236 1.09861 0.40547 17 1.88570 1.11406 2.38538 0.84863 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.36521 1.23865 4.12416 0.13093 2.09786 0.72232 0.66480 18 3.01669 3.93398 0.10375 3.50595 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 19 3.01669 3.93398 0.10375 3.50595 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 20 1.39575 1.81832 2.22145 0.73064 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.12291 4.13843 2.30547 1.46634 0.26236 1.09861 0.40547 21 2.02376 1.07660 2.57561 0.79632 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03543 4.05095 4.05095 1.46634 0.26236 0.27754 1.41735 22 0.42355 2.66044 1.74867 2.28911 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 23 1.71242 2.22598 0.72387 1.48396 25 g - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 24 0.70585 2.67609 1.03289 2.50712 26 a - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 25 2.64281 3.49734 0.14970 3.28078 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 26 3.48388 0.20315 3.24012 2.17162 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 27 3.01669 3.93398 0.10375 3.50595 29 G - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 28 2.62505 0.46373 2.51489 1.52436 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 29 2.13285 0.67720 1.97510 1.44939 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 30 1.63134 1.55793 0.83398 1.83606 32 g - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 31 2.17160 1.76155 0.49614 2.25046 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 32 0.76859 2.67696 0.94787 2.52576 34 a - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 33 3.22646 0.13864 3.79741 2.69813 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 34 2.77452 2.63686 3.29633 0.18752 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 35 1.26098 1.53608 1.55749 1.23534 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 36 1.26098 1.53608 1.55750 1.23534 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 37 1.26098 1.53608 1.55750 1.23534 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 38 0.11054 3.55425 3.24860 3.29095 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.16208 4.13843 2.01233 1.46634 0.26236 1.09861 0.40547 39 1.62328 1.83950 0.71160 1.87734 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03682 4.01318 4.01318 1.46634 0.26236 2.34008 0.10128 40 2.26995 2.86551 0.27293 2.54358 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03682 4.01318 4.01318 1.46634 0.26236 2.34008 0.10128 41 2.04563 2.73552 0.33703 2.38646 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03682 4.01318 4.01318 1.46634 0.26236 2.34008 0.10128 42 1.37377 1.69231 2.00498 0.84842 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03682 4.01318 4.01318 1.46634 0.26236 2.34008 0.10128 43 1.33068 1.39766 1.90861 1.07810 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03682 4.01318 4.01318 1.46634 0.26236 2.34008 0.10128 44 1.32629 1.57907 1.73601 1.04369 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05162 4.01318 3.43458 1.46634 0.26236 2.34008 0.10128 45 1.43409 1.47946 1.79247 1.00142 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05200 3.99891 3.43158 1.46634 0.26236 2.41284 0.09383 46 1.20554 1.71146 1.71680 1.07814 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04216 3.98481 3.78610 1.46634 0.26236 2.47899 0.08755 47 1.28626 1.31745 1.82020 1.22456 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03806 3.98072 3.98072 1.46634 0.26236 2.49725 0.08590 48 1.10124 1.60248 1.50580 1.40934 50 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03806 3.98072 3.98072 1.46634 0.26236 2.49725 0.08590 49 1.05660 1.56245 1.66691 1.37077 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05499 3.98072 3.35715 1.46634 0.26236 2.49725 0.08590 50 1.29224 1.47086 1.66257 1.18428 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96442 3.96442 1.46634 0.26236 2.56607 0.07995 51 1.26431 1.51216 1.62853 1.20093 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96442 3.96442 1.46634 0.26236 2.56607 0.07995 52 1.38267 1.54278 1.32568 1.31050 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96442 3.96442 1.46634 0.26236 2.56607 0.07995 53 1.20359 1.55692 1.45907 1.36004 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.14784 3.96442 2.13328 1.46634 0.26236 2.56607 0.07995 54 1.44513 1.68263 1.23869 1.24259 56 g - - _ 1.38629 1.38629 1.38629 1.38629 0.07774 3.85965 2.92405 1.46634 0.26236 2.90447 0.05634 55 1.37512 1.59447 1.32540 1.27842 57 u - - _ 1.38629 1.38629 1.38629 1.38629 0.10032 3.82647 2.60819 1.46634 0.26236 2.98590 0.05181 56 1.42763 1.23331 1.68432 1.26151 58 c - - _ 1.38629 1.38629 1.38629 1.38629 0.61871 0.82467 3.77319 3.01599 0.05024 1.82905 0.17503 57 1.37696 1.39044 1.59776 1.21625 98 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04437 3.83040 3.83040 1.46634 0.26236 1.65702 0.21159 58 1.38031 1.28053 1.61100 1.30593 99 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04183 3.88821 3.88821 1.46634 0.26236 1.52828 0.24451 59 1.33589 1.71957 1.16536 1.40193 100 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03962 3.94129 3.94129 1.46634 0.26236 1.43171 0.27299 60 1.52137 1.19763 1.51560 1.34707 101 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03782 3.98679 3.98679 1.46634 0.26236 2.47000 0.08838 61 1.47640 1.21567 1.77576 1.18523 102 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03782 3.98679 3.98679 1.46634 0.26236 2.00386 0.14481 62 1.35460 1.52992 1.70819 1.06653 103 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03740 3.99776 3.99776 1.46634 0.26236 2.41847 0.09328 63 1.25867 1.40052 1.47240 1.42659 104 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03740 3.99776 3.99776 1.46634 0.26236 1.98615 0.14760 64 1.33249 1.86882 1.13253 1.34839 105 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03703 4.00763 4.00763 1.46634 0.26236 2.36910 0.09824 65 1.26869 1.47624 1.61671 1.23184 106 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03703 4.00763 4.00763 1.46634 0.26236 2.19602 0.11793 66 1.12181 1.84136 1.61801 1.14754 107 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03690 4.01106 4.01106 1.46634 0.26236 2.09676 0.13108 67 2.01140 0.52827 2.54962 1.61715 108 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03670 4.01630 4.01630 1.46634 0.26236 1.66881 0.20883 68 2.03751 0.46699 2.61479 1.77446 109 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03609 4.03281 4.03281 1.46634 0.26236 1.60963 0.22310 69 1.98429 2.14742 2.32570 0.43383 110 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03554 4.04788 4.04788 1.46634 0.26236 2.13159 0.12630 70 2.63549 3.59893 0.15135 3.18398 111 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03554 4.04788 4.04788 1.46634 0.26236 2.13159 0.12630 71 1.01246 2.55475 0.81477 2.15224 112 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03554 4.04788 4.04788 1.46634 0.26236 2.13159 0.12630 72 2.84434 3.74115 0.12579 3.31590 113 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03554 4.04788 4.04788 1.46634 0.26236 2.13159 0.12630 73 0.51595 2.12370 2.22622 1.73988 114 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03554 4.04788 4.04788 1.46634 0.26236 2.13159 0.12630 74 1.22051 1.33205 1.82988 1.27099 115 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03554 4.04788 4.04788 1.46634 0.26236 0.27089 1.43845 75 0.11054 3.55425 3.24860 3.29095 116 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 76 2.75393 1.09003 2.48309 0.66042 117 U - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 77 2.50079 0.54943 1.65313 1.90211 118 C - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 78 2.06826 0.92327 1.43288 1.43651 119 c - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 79 1.65668 2.13211 0.60361 1.93926 120 G - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 80 1.77832 2.68159 0.39613 2.41119 121 G - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 81 0.33148 2.62717 2.61043 1.99252 122 A - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 82 2.03628 2.71509 0.37623 2.14690 123 G - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 83 1.21612 2.73238 0.61245 2.33782 124 G - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 84 2.38616 1.95905 2.90549 0.33925 125 U - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 85 3.22646 0.13864 3.79741 2.69813 126 C - - , 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 86 1.91826 1.60107 0.69051 1.89621 127 G - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 87 1.71389 1.18190 1.31723 1.40542 128 c - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 88 2.79219 3.55634 0.12804 3.49504 129 G - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 89 2.16677 2.64075 0.34148 2.26890 130 G - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 90 2.79000 3.55341 0.12842 3.49104 131 G - - < 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 91 2.23395 2.24171 2.84253 0.31699 132 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 92 2.90947 2.82349 3.43723 0.15789 133 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 93 3.22646 0.13864 3.79741 2.69813 134 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 94 1.22627 2.73722 0.60549 2.34282 135 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 95 0.62518 2.45368 1.41615 1.99356 136 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 96 0.45266 2.54155 1.81203 2.10373 137 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 97 1.60308 1.88384 1.48514 0.86691 138 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 98 3.67489 0.15361 3.39438 2.48317 139 C - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 99 2.44210 0.38874 2.46348 1.89729 140 C - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 100 3.67810 0.15340 3.39590 2.48377 141 C - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 101 1.60195 1.44873 1.06334 1.52175 142 g - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 102 2.12351 0.77796 1.48031 1.64259 143 c - - > 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 103 2.88910 0.42344 2.55480 1.55175 144 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 104 2.40796 0.59522 1.80934 1.63579 145 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 105 2.17972 0.78070 1.54477 1.53489 146 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 106 2.30335 0.70297 1.37213 1.88784 147 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 107 1.88960 2.72650 0.33640 2.67245 148 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 108 2.30990 3.27196 0.20291 3.06953 149 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03242 4.13843 4.13843 1.46634 0.26236 1.09861 0.40547 109 3.62624 0.15692 3.37116 2.47388 150 C - - ) 1.38629 1.38629 1.38629 1.38629 0.20962 1.75354 4.13843 1.12379 0.39311 1.09861 0.40547 110 0.11054 3.55425 3.24860 3.29095 154 A - - : 1.38629 1.38629 1.38629 1.38629 0.01634 4.12235 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Phe ACC arch-Phe-r2-033017 STATES 236 NODES 63 CLEN 74 W 405 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:30:45 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Phe-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Phe-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Phe-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Phe-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Phe-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Phe-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Phe-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 192 EFFN 192.000000 CKSUM 1309798945 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8017 0.71885 ECMLC 0.61933 -7.48898 2.70326 1600000 661634 0.001814 ECMGC 0.29212 -52.04449 -35.78218 1600000 46257 0.008647 ECMLI 0.63229 -6.87673 3.02868 1600000 629780 0.001905 ECMGI 0.32256 -46.33132 -31.85712 1600000 42629 0.009383 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 405 816 -12.525 -13.770 -0.002 -10.224 IL 1 1 2 1 4 14 40 407 818 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 42 408 818 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 125 - A - - MR 3 2 3 5 5 21 49 406 817 -12.577 -0.001 -12.392 -12.604 -13.496 1.981 -4.418 -8.704 -8.686 D 4 2 3 5 5 11 36 404 814 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 14 40 406 816 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 124 G C - - MP 6 5 3 10 6 21 48 405 816 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -11.475 -8.099 -13.799 -5.576 -13.094 -9.262 -7.397 -13.252 -9.468 3.995 -9.660 -6.032 -7.763 -9.729 -9.846 -12.892 ML 7 5 3 10 6 13 38 403 813 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 12 38 402 813 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 9 35 397 807 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 39 404 815 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 14 39 404 815 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 123 C G - - MP 12 11 6 16 6 20 47 403 814 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -10.478 -10.466 -9.869 -6.724 -8.304 -10.094 3.660 -9.172 -9.932 1.715 -10.092 -8.472 -5.026 -10.423 -6.005 -8.753 ML 13 11 6 16 6 12 38 401 811 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 12 38 400 811 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 35 395 806 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 13 39 402 813 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 39 402 813 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 122 C G - - MP 18 17 6 22 6 19 45 401 812 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -9.852 -9.743 -9.462 -1.168 -8.010 -9.848 3.597 -8.826 -9.461 0.666 -9.733 -7.547 0.867 -9.879 -5.644 -8.242 ML 19 17 6 22 6 12 37 399 809 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 37 399 809 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 8 34 394 804 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 13 38 400 811 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 13 39 400 811 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 121 G C - - MP 24 23 6 28 6 17 43 399 810 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -7.548 -6.192 -7.368 1.202 -8.455 -7.965 1.144 -8.043 -7.799 3.361 -8.048 -1.612 -0.534 -7.225 -2.888 -6.330 ML 25 23 6 28 6 12 37 397 807 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 11 37 397 807 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 8 34 393 803 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 38 398 809 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 38 398 809 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 120 C G - - MP 30 29 6 34 6 15 41 397 808 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -8.133 -7.841 -8.099 0.699 -6.937 -8.889 3.065 -7.607 -7.974 1.999 -8.463 -5.424 0.703 -8.298 -1.682 -6.696 ML 31 29 6 34 6 11 37 395 806 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 37 395 805 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 8 34 392 802 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 38 397 807 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 12 38 396 807 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 119 G C - - MP 36 35 6 40 6 13 39 395 806 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -9.947 -8.840 -9.653 -0.017 -8.731 -9.885 2.234 -9.320 -9.533 3.334 -9.792 -6.512 -5.245 -9.856 -2.566 -8.515 ML 37 35 6 40 6 11 36 394 804 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 36 393 804 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 34 391 801 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 11 37 395 805 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 11 37 394 805 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 118 G C - - MP 42 41 6 46 4 11 37 393 804 -12.729 -12.936 -0.001 -11.350 -9.037 -7.567 -9.059 1.270 -10.502 -9.904 -5.633 -9.434 -8.913 3.278 -9.354 1.127 0.726 -9.206 -7.619 -7.860 ML 43 41 6 46 4 10 35 392 803 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 35 392 802 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 34 390 801 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 10 36 393 804 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 10 36 393 803 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 9 35 391 802 -13.640 -0.000 -12.294 -8.182 -1.297 -8.966 1.843 D 49 47 6 50 3 7 34 390 800 -6.174 -1.687 -0.566 IL 50 50 3 50 3 9 35 392 802 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 8 34 390 801 -14.292 -0.000 1.842 -1.303 -7.977 -7.457 D 52 50 3 53 2 7 33 389 800 -8.445 -0.004 IL 53 53 3 53 2 8 35 391 801 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 7 33 389 800 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 1 219 471 -13.640 -0.000 -12.294 IL 56 56 2 56 3 1 1 222 475 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 78 - U - - - ML 57 56 2 59 3 1 1 219 471 -13.640 -0.132 -3.517 -0.341 -0.789 -1.282 1.151 D 58 56 2 59 3 0 0 233 485 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 219 472 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 79 - U - - - ML 60 59 3 62 3 1 1 213 465 -3.134 -0.175 -12.163 -2.169 -2.347 0.265 1.250 D 61 59 3 62 3 0 0 237 490 -0.465 -1.946 -5.965 IL 62 62 3 62 3 1 1 241 494 -0.105 -3.834 -12.339 0.000 0.000 0.000 0.000 [ MATL 47 ] 98 - G - - - ML 63 62 3 65 3 1 1 30 48 -13.640 -0.000 -12.294 -1.075 -9.553 1.816 -8.710 D 64 62 3 65 3 0 0 32 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 99 - U - - - ML 66 65 3 68 3 1 1 29 47 -13.640 -0.000 -12.294 -6.491 -3.570 -1.060 1.776 D 67 65 3 68 3 0 0 30 49 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 100 - C - - - ML 69 68 3 71 5 1 1 28 46 -12.577 -0.001 -12.392 -12.604 -13.496 -8.614 1.964 -9.000 -3.427 D 70 68 3 71 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 101 117 C G - - MP 72 71 3 76 6 2 2 27 45 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -10.455 -10.220 -9.891 -6.554 -8.370 -10.108 3.249 -9.213 -9.899 2.683 -10.079 -8.117 -5.083 -10.420 -6.068 -8.766 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 102 116 C G - - MP 78 77 6 82 6 2 2 25 43 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -10.027 -9.976 -9.575 -2.917 -8.078 -9.903 3.325 -8.917 -9.596 1.876 -9.834 -7.852 1.096 -10.017 -5.730 -8.383 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 103 115 G C - - MP 84 83 6 88 6 2 2 23 41 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -10.551 -10.782 -9.876 -7.037 -8.232 -10.016 1.901 -9.145 -9.971 3.379 -10.094 -9.145 -1.727 -10.384 0.622 -8.780 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 104 114 G C - - MP 90 89 6 94 6 2 2 21 39 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -9.454 -7.621 -9.414 -1.554 -9.687 -3.067 -2.789 -4.140 -9.003 3.876 -9.225 -5.379 -0.717 -8.851 -7.011 -8.363 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 105 113 G C - - MP 96 95 6 100 4 2 2 19 37 -12.729 -12.936 -0.001 -11.350 -11.478 -2.867 -13.820 -5.577 -13.106 -9.261 -7.401 -13.268 -9.468 3.983 -9.660 -6.032 -7.766 -9.729 -9.852 -12.920 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 106 - U - - - ML 102 101 6 104 3 1 1 16 34 -13.640 -0.000 -12.294 -8.661 -3.670 -9.487 1.970 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 107 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.640 -0.000 -12.294 -10.645 -9.422 -12.024 1.999 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 108 - C - - - ML 108 107 3 110 3 1 1 14 32 -13.640 -0.000 -12.294 -9.566 1.998 -10.151 -8.361 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 109 - A - - - ML 111 110 3 113 3 1 1 12 31 -13.640 -0.000 -12.294 1.742 -8.460 -0.622 -8.363 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 110 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.640 -0.000 -12.294 1.998 -9.662 -8.898 -9.008 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 111 - A - - - ML 117 116 3 119 3 1 1 9 28 -13.640 -0.000 -12.294 1.487 -7.805 0.102 -3.074 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 112 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -8.285 -2.311 -9.076 1.924 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 362 772 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 0 15 362 772 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 2 27 45 -0.002 -11.654 -11.062 -11.702 [ MATP 15 ] 10 27 G C - - MP 127 126 1 131 6 2 4 27 45 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -11.350 -8.103 -13.214 -1.343 -13.043 -9.305 -7.398 -12.851 -9.463 3.961 -9.669 -6.011 -7.746 -9.757 -9.823 -12.111 ML 128 126 1 131 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 C G - - MP 133 132 6 137 6 2 4 25 43 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -10.545 -10.800 -9.871 -7.034 -8.229 -10.023 3.708 -9.141 -9.971 0.741 -10.096 -9.155 0.289 -10.389 -5.931 -8.774 ML 134 132 6 137 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A - - MP 139 138 6 143 6 2 3 23 41 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -10.551 -10.805 -9.875 -7.043 -8.233 -10.026 0.789 -9.144 -9.975 -1.442 -10.099 -9.161 3.793 -10.395 -5.935 -8.779 ML 140 138 6 143 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 C G - - MP 145 144 6 149 4 2 2 21 39 -12.729 -12.936 -0.001 -11.350 -1.884 -10.035 -9.856 0.745 -8.432 -10.215 3.805 -9.219 -9.861 -6.456 -10.081 -7.763 -5.135 -10.471 -6.128 -8.709 ML 146 144 6 149 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 27 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 1 18 36 -13.640 -0.000 -12.294 1.998 -9.662 -8.898 -9.008 D 152 150 6 153 3 0 0 20 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 1 17 35 -13.640 -0.000 -12.294 -3.461 -9.931 1.966 -8.923 D 155 153 3 156 3 0 0 19 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 16 34 -13.640 -0.214 -2.859 -1.299 1.551 -6.969 -0.611 D 158 156 3 159 3 0 0 18 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 160 159 3 162 3 1 1 15 33 -5.203 -0.421 -2.145 -3.781 1.266 -6.817 0.598 D 161 159 3 162 3 0 0 13 31 -12.220 -7.733 -0.007 IL 162 162 3 162 3 1 1 15 33 -3.356 -0.172 -6.057 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - U - - - ML 163 162 3 165 3 1 1 14 32 -13.057 -0.001 -11.711 -3.134 0.424 -6.511 1.341 D 164 162 3 165 3 0 0 13 31 -13.479 -0.006 -7.871 IL 165 165 3 165 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 1 12 31 -13.640 -0.000 -12.294 -8.188 -9.961 1.998 -8.948 D 167 165 3 168 3 0 0 16 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - - - ML 169 168 3 171 3 1 1 11 29 -13.640 -0.000 -12.294 -8.188 -9.961 1.998 -8.948 D 170 168 3 171 3 0 0 15 33 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - G - - - ML 172 171 3 174 3 1 1 9 28 -13.640 -0.000 -12.294 -4.186 -4.926 1.967 -8.661 D 173 171 3 174 3 0 0 13 32 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.998 -9.662 -8.898 -9.008 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 346 756 -13.640 -0.000 -12.294 IL 180 180 2 180 3 1 1 347 757 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - G - - - ML 181 180 2 183 5 1 1 346 756 -12.577 -0.001 -12.392 -12.604 -13.496 -0.127 -8.929 1.623 -8.422 D 182 180 2 183 5 0 0 343 753 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 345 756 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 77 C G - - MP 184 183 3 188 6 2 2 345 755 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -10.542 -10.776 -9.872 1.043 -8.235 -10.028 3.638 -9.143 -9.969 -6.996 -10.096 -9.098 0.534 -10.392 -5.936 -8.773 ML 185 183 3 188 6 1 1 342 752 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 341 752 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 336 746 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 343 754 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 343 754 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 76 C G - - MP 190 189 6 194 6 2 2 343 753 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -8.679 -8.448 -8.563 -1.229 -7.306 -9.232 3.332 -8.025 -8.468 -0.520 -8.902 -6.077 2.107 -8.809 -1.157 -7.202 ML 191 189 6 194 6 1 1 340 750 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 339 750 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 334 745 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 341 752 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 341 752 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 75 c g - - MP 196 195 6 200 6 2 2 341 751 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -8.636 -8.249 -8.538 1.141 -7.404 -9.259 2.841 -8.068 -8.450 2.184 -8.893 -5.843 1.000 -8.781 -4.915 -7.186 ML 197 195 6 200 6 1 1 338 748 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 337 748 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 333 743 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 340 750 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 339 750 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 74 G C - - MP 202 201 6 206 6 2 2 339 749 -13.540 -13.479 -0.001 -12.256 -12.536 -12.931 -11.351 -8.176 -12.764 -5.612 -11.660 -9.315 0.732 -12.180 -9.492 3.837 -9.687 -6.102 -7.316 -9.773 -8.958 -11.714 ML 203 201 6 206 6 1 1 337 747 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 335 745 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 332 742 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 338 748 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 337 748 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 73 g c - - MP 208 207 6 212 4 2 2 337 747 -12.729 -12.936 -0.001 -11.350 -7.796 -6.484 -7.627 2.622 -8.436 -8.256 0.592 -8.183 -7.997 2.651 -8.273 -4.109 0.735 -7.527 -5.619 -1.888 ML 209 207 6 212 4 1 1 335 745 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 333 743 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 331 741 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 336 746 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 336 746 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - C - - - ML 214 213 6 216 3 1 1 335 745 -13.640 -0.000 -12.294 -8.776 1.840 -9.272 -1.265 D 215 213 6 216 3 0 0 329 740 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 335 745 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - - - ML 217 216 3 219 3 1 1 334 744 -13.640 -0.000 -12.294 -10.645 -9.422 -12.024 1.999 D 218 216 3 219 3 0 0 327 737 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 334 744 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - u - - - ML 220 219 3 222 3 1 1 333 743 -13.640 -0.000 -12.294 0.015 -0.015 -0.017 0.017 D 221 219 3 222 3 0 0 323 734 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 332 743 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - u - - - ML 223 222 3 225 3 1 1 332 742 -13.640 -0.000 -12.294 0.015 -0.015 -0.017 0.017 D 224 222 3 225 3 0 0 318 728 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 331 741 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - u - - - ML 226 225 3 228 3 1 1 331 741 -13.640 -0.000 -12.294 0.015 -0.015 -0.017 0.017 D 227 225 3 228 3 0 0 307 717 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 329 740 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - G - - - ML 229 228 3 231 3 1 1 330 740 -2.065 -0.394 -12.294 -1.075 -9.553 1.816 -8.710 D 230 228 3 231 3 0 0 265 676 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 361 771 -0.065 -4.512 -13.509 0.000 0.000 0.000 0.000 [ MATL 42 ] 72 - A - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 1.998 -9.662 -8.898 -9.008 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Phe ACC arch-Phe-r2-033017 LENG 74 MAXL 400 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:30:46 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Phe-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Phe-r2-033017.sto NSEQ 192 EFFN 5.791992 CKSUM 1309798945 STATS LOCAL MSV -8.1220 0.71885 STATS LOCAL VITERBI -9.2095 0.71885 STATS LOCAL FORWARD -3.3483 0.71885 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58367 1.29745 1.15980 1.57020 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 0.00000 * 1 3.35100 4.31618 0.06435 4.27452 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 2 2.95669 0.46596 1.61422 2.10841 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 3 2.42391 0.61568 1.91091 1.49966 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 4 1.69543 1.98133 0.57623 2.14920 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 5 1.98459 0.93912 1.42164 1.46849 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 6 1.95417 1.51804 0.64388 2.17218 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 7 1.67239 2.64519 0.47672 2.11700 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 8 2.98480 2.16683 3.50639 0.21703 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 9 0.21578 2.36894 3.11581 2.87944 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 10 2.98155 4.21243 0.08497 4.13946 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 11 2.91725 0.45739 2.02698 1.70786 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 12 3.25090 1.57486 2.75957 0.36975 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 13 2.02125 0.46325 2.41070 1.90702 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 14 0.04727 4.37224 4.00926 4.17329 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 15 3.18491 4.43194 0.07409 4.00991 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 16 1.96386 0.53031 3.00828 1.50559 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.13565 4.46669 2.15964 1.46634 0.26236 1.09861 0.40547 17 2.25710 0.72080 2.93484 1.03327 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.23487 3.42746 1.73240 0.66139 0.72595 2.48863 0.08667 18 2.04503 1.27347 2.66727 0.65139 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03114 4.17783 4.17783 1.46634 0.26236 0.08393 2.51947 19 3.77226 4.76441 0.04634 4.28617 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 20 3.77226 4.76441 0.04634 4.28618 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 21 3.14037 3.97541 0.08842 3.79038 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 22 0.04727 4.37224 4.00926 4.17329 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 23 2.07379 2.59959 0.41978 1.94632 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 24 0.40984 2.88576 1.46663 3.00113 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 25 1.89241 2.11649 0.41654 2.66624 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 26 4.22595 0.10390 4.03408 2.71249 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 27 1.50540 3.37667 0.36303 3.02939 28 G - - , 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 28 2.03902 0.50770 2.59353 1.64399 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 29 2.41228 0.73982 2.10623 1.16637 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 30 1.86172 1.05298 1.30469 1.49414 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 31 2.72556 2.41645 0.21939 3.16428 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 32 1.32232 1.94992 0.84688 1.81740 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 33 3.26907 0.20603 3.88295 2.05918 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 34 3.70753 3.50611 4.25190 0.07127 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 35 1.27628 1.51293 1.53204 1.25679 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 36 1.27628 1.51293 1.53204 1.25679 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 37 1.27628 1.51293 1.53204 1.25679 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 38 2.09000 3.70458 0.20259 3.34995 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.22715 1.65173 4.46669 3.11590 0.04535 1.09861 0.40547 39 0.04727 4.37224 4.00926 4.17329 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 40 2.03825 0.92974 1.80559 1.16890 73 c - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 41 3.40613 0.24510 2.33467 2.43768 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 42 1.67339 1.39575 0.96447 1.69524 75 g - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 43 1.33827 2.25638 0.65017 2.19811 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 44 1.82358 2.77134 0.46245 1.92254 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 45 1.42668 1.74034 1.97842 0.80710 78 u - - , 1.38629 1.38629 1.38629 1.38629 0.04077 4.46669 3.55892 1.46634 0.26236 1.09861 0.40547 46 1.76628 2.08969 1.45971 0.74865 79 u - - , 1.38629 1.38629 1.38629 1.38629 0.16574 1.95864 4.44956 2.61915 0.07566 0.59158 0.80621 47 2.08998 3.70457 0.20259 3.34994 98 G - - , 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 48 2.55852 2.54463 2.27049 0.30000 99 U - - , 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 49 3.83502 0.09081 4.34666 2.95151 100 C - - , 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 50 2.71922 0.76219 1.05495 2.12679 101 c - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 51 2.48361 0.75827 1.52724 1.46557 102 c - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 52 2.30559 1.48027 0.69232 1.75847 103 G - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 53 1.97742 2.53441 0.37616 2.34577 104 G - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 54 3.15878 4.23591 0.07537 4.15702 105 G - - < 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 55 3.33057 2.93735 3.85167 0.11656 106 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 56 3.70753 3.50611 4.25190 0.07127 107 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 57 4.13402 0.05788 4.61450 3.49630 108 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 58 0.27529 3.33064 1.83890 3.08152 109 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 59 0.04727 4.37224 4.00926 4.17329 110 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 60 0.49508 2.87938 1.42597 2.36409 111 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 61 3.13914 2.55190 3.65617 0.15910 112 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 62 4.28735 0.08700 4.09642 2.93847 113 C - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 63 2.57059 0.42680 2.40228 1.71256 114 C - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 64 2.27167 0.74362 1.22883 2.04921 115 c - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 65 1.63341 1.61190 0.69379 2.24860 116 g - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 66 2.37596 1.10342 0.71454 2.45427 117 g - - > 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 67 2.28635 0.62967 2.45561 1.27374 118 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 68 2.45604 0.70531 1.41432 1.73061 119 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 69 1.68449 1.51729 0.84119 1.80813 120 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 70 2.39394 0.65428 1.84163 1.46814 121 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 71 1.67468 2.02996 0.55859 2.21390 122 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 72 2.36891 1.67548 0.42718 2.70526 123 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 73 4.44528 0.07735 4.21363 3.03851 124 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02324 4.46669 4.46669 1.46634 0.26236 1.09861 0.40547 74 0.07571 3.71767 3.68954 3.74460 125 A - - : 1.38629 1.38629 1.38629 1.38629 0.40723 1.09510 * 1.10796 0.40082 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Pro ACC arch-Pro-r2-033017 STATES 236 NODES 63 CLEN 74 W 768 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:37:35 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Pro-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Pro-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Pro-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Pro-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Pro-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Pro-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Pro-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 520 EFFN 520.000000 CKSUM 3880981200 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.0349 0.71893 ECMLC 0.53602 -10.18838 1.61647 1600000 671835 0.001786 ECMGC 0.33412 -49.86254 -36.71729 1600000 32322 0.012375 ECMLI 0.57111 -9.03614 2.00094 1600000 655732 0.001830 ECMGI 0.33112 -47.41005 -34.24919 1600000 31234 0.012807 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 768 1605 -13.953 -15.199 -0.001 -11.652 IL 1 1 2 1 4 19 43 770 1608 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 45 771 1608 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 155 - A - - MR 3 2 3 5 5 26 51 770 1607 -1.248 -0.789 -13.818 -14.031 -14.922 1.999 -11.030 -10.268 -10.365 D 4 2 3 5 5 16 38 766 1603 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 26 52 771 1608 -0.587 -1.581 -14.657 -12.825 -13.931 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 151 G C - - MP 6 5 3 10 6 27 50 768 1605 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -12.927 -4.109 -15.511 -6.996 -14.532 -4.017 -8.804 -14.849 -10.872 3.987 -11.059 -7.442 -9.175 -11.120 -11.265 -14.760 ML 7 5 3 10 6 18 40 765 1602 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 40 764 1602 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 36 759 1596 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 42 766 1604 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 42 766 1604 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 150 G C - - MP 12 11 6 16 6 26 48 766 1603 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -12.873 -9.501 -15.187 -6.976 -14.507 -10.665 -8.803 -14.648 -10.870 3.987 -11.063 -2.970 -9.168 -11.132 -11.254 -14.272 ML 13 11 6 16 6 18 40 763 1600 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 40 763 1600 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 14 36 757 1595 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 41 765 1602 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 42 764 1602 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 149 G C - - MP 18 17 6 22 6 25 46 764 1601 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -12.895 -9.501 -15.312 -6.985 -14.513 -10.658 -8.802 -14.726 -10.871 3.998 -11.061 -7.437 -9.170 -11.127 -11.256 -14.454 ML 19 17 6 22 6 18 40 761 1598 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 39 761 1598 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 36 756 1593 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 41 763 1600 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 41 762 1600 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 148 g c - - MP 24 23 6 28 6 23 44 762 1599 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -9.776 -4.869 -9.649 1.744 -10.549 -10.359 2.171 -10.134 -9.874 2.960 -10.203 -6.006 -1.739 -9.641 -7.756 -8.549 ML 25 23 6 28 6 17 39 759 1597 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 39 759 1596 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 14 36 755 1592 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 40 761 1598 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 41 761 1598 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 147 C G - - MP 30 29 6 34 6 21 42 760 1597 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -11.987 -12.267 -11.305 -1.180 -9.656 -11.450 3.804 -10.571 -11.408 -8.475 -11.529 -10.669 0.497 -11.822 -2.547 -10.210 ML 31 29 6 34 6 17 39 758 1595 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 38 757 1595 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 36 754 1591 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 40 759 1596 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 40 759 1596 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 146 C G - - MP 36 35 6 40 6 19 40 758 1595 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -11.444 -11.466 -10.981 -0.464 -9.458 -11.287 3.794 -10.313 -11.012 -0.707 -11.242 -9.403 -0.531 -11.404 -4.272 -4.497 ML 37 35 6 40 6 16 38 756 1593 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 37 756 1593 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 35 753 1591 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 39 757 1594 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 39 757 1594 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 145 G C - - MP 42 41 6 46 4 17 38 756 1593 -14.159 -14.366 -0.000 -12.780 -12.486 -9.516 -13.746 -0.333 -14.308 -10.825 -8.798 -13.572 -10.854 3.909 -11.097 -4.322 -9.105 -11.234 -3.022 -12.487 ML 43 41 6 46 4 15 37 755 1592 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 36 754 1591 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 35 753 1590 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 38 755 1593 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 37 755 1592 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 15 36 754 1591 -15.069 -0.000 -13.723 -10.424 -1.345 -11.291 1.850 D 49 47 6 50 3 13 35 752 1589 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 37 754 1592 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - g - - - ML 51 50 3 53 2 14 35 753 1590 -15.723 -0.000 0.646 -0.686 0.832 -4.897 D 52 50 3 53 2 13 34 752 1589 -8.445 -0.004 IL 53 53 3 53 2 14 36 753 1590 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 13 34 752 1589 [ BEGR 45 ] - - - - - - S 55 54 1 56 3 0 1 30 49 -15.069 -0.000 -13.723 IL 56 56 2 56 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 123 - U - - - ML 57 56 2 59 3 1 1 30 49 -15.069 -0.132 -3.519 -0.259 -2.371 -1.082 1.321 D 58 56 2 59 3 0 0 33 51 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 124 - G - - - ML 60 59 3 62 3 1 1 29 48 -14.937 -0.000 -13.591 -4.542 -10.836 1.939 -3.021 D 61 59 3 62 3 0 0 29 47 -12.981 -0.009 -7.372 IL 62 62 3 62 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 125 - A - - - ML 63 62 3 65 3 1 1 28 47 -1.073 -0.930 -13.723 1.687 -9.973 -0.361 -9.884 D 64 62 3 65 3 0 0 26 45 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 28 46 -8.698 -0.004 -11.398 0.000 0.000 0.000 0.000 [ MATL 49 ] 127 - C - - - ML 66 65 3 68 5 1 1 27 45 -14.003 -0.000 -13.818 -14.031 -14.922 -11.405 1.999 -12.147 -9.956 D 67 65 3 68 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 128 144 C G - - MP 69 68 3 73 6 2 2 26 44 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -9.313 -9.018 -9.306 -2.447 -3.868 -3.924 3.618 -3.896 -9.167 -0.178 -9.675 -2.997 -0.514 -9.493 0.691 -7.887 ML 70 68 3 73 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 129 143 C G - - MP 75 74 6 79 6 2 2 24 42 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -9.416 -9.127 -9.397 -2.533 -2.956 -3.924 3.329 -3.897 -9.263 1.571 -9.763 -6.703 1.224 -9.590 -2.403 -7.984 ML 76 74 6 79 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 130 142 G C - - MP 81 80 6 85 6 2 2 22 40 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -11.113 -9.143 -11.249 -2.096 -12.107 -10.743 1.753 -11.607 -3.921 3.582 -3.923 -3.756 -7.547 -10.631 -2.280 -10.117 ML 82 80 6 85 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 131 141 G C - - MP 87 86 6 91 6 2 2 20 38 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -10.375 -9.025 -10.318 2.105 -11.147 -11.241 -1.882 -4.545 -10.324 3.483 -10.739 -6.528 -2.462 -10.523 -8.458 -9.144 ML 88 86 6 91 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 132 140 G C - - MP 93 92 6 97 4 2 2 18 36 -14.159 -14.366 -0.000 -12.780 -12.639 -9.510 -14.199 -0.166 -14.392 -10.755 -8.801 -13.938 -10.861 3.914 -11.082 -5.284 -9.132 -11.190 -11.201 -13.006 ML 94 92 6 97 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 133 - U - - - ML 99 98 6 101 3 1 1 15 33 -15.069 -0.000 -13.723 -12.302 -10.951 -13.837 2.000 D 100 98 6 101 3 0 0 19 37 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 134 - U - - - ML 102 101 3 104 3 1 1 14 32 -15.069 -0.000 -13.723 -10.853 -3.645 -11.790 1.971 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 135 - C - - - ML 105 104 3 107 3 1 1 13 31 -15.069 -0.000 -13.723 -11.405 1.999 -12.147 -9.956 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 136 - A - - - ML 108 107 3 110 3 1 1 11 30 -15.069 -0.000 -13.723 1.765 -9.992 -0.741 -9.887 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 137 - A - - - ML 111 110 3 113 3 1 1 10 28 -15.069 -0.000 -13.723 1.999 -11.030 -10.268 -10.365 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 138 - A - - - ML 114 113 3 116 3 1 1 8 27 -15.069 -0.000 -13.723 1.923 -4.260 -3.340 -4.130 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 139 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -12.302 -10.951 -13.837 2.000 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 2 18 730 1568 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 179 2 18 730 1568 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 3 27 46 -0.001 -13.068 -12.476 -13.116 [ MATP 15 ] 10 28 G U - - MP 124 123 1 128 6 2 6 27 46 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -10.978 -9.638 -11.173 -2.548 -13.314 -14.469 -8.772 -11.216 -10.733 -0.279 -11.403 3.906 -8.697 -12.478 -10.602 -9.771 ML 125 123 1 128 6 1 2 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 2 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 2 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 2 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 G C - - MP 130 129 6 134 6 2 5 25 44 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -11.888 -11.383 -11.373 -7.841 -9.884 -11.513 -5.588 -10.708 -11.292 3.025 -11.484 -9.236 2.901 -11.821 -1.488 -10.241 ML 131 129 6 134 6 1 2 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 2 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 2 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 2 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 G C - - MP 136 135 6 140 6 2 5 23 42 -14.944 -14.883 -0.000 -13.660 -13.939 -14.335 -11.983 -12.261 -11.303 -8.495 -3.259 -11.448 2.544 -10.569 -11.406 3.209 -11.527 -10.658 -0.365 -11.818 -4.800 -10.207 ML 137 135 6 140 6 1 2 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 2 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 2 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 2 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 U U - - MP 142 141 6 146 4 2 3 21 40 -14.159 -14.366 -0.000 -12.780 -11.988 -12.270 -11.305 -8.507 -3.444 -11.450 -0.894 -10.571 -4.044 -8.478 -11.529 -10.674 -2.609 -11.822 2.388 3.308 ML 143 141 6 146 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 2 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 2 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 148 147 6 150 3 1 3 19 37 -15.069 -0.000 -13.723 1.999 -11.030 -10.268 -10.365 D 149 147 6 150 3 0 0 22 40 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 151 150 3 153 3 1 2 18 36 -15.069 -0.000 -13.723 -9.596 -11.361 1.999 -10.350 D 152 150 3 153 3 0 0 21 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 154 153 3 156 3 1 1 16 35 -15.069 -0.086 -4.116 -4.206 1.860 -6.045 -1.729 D 155 153 3 156 3 0 0 20 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 157 156 3 159 3 1 2 15 34 -14.983 -0.000 -13.637 -11.363 1.271 -12.602 0.665 D 158 156 3 159 3 0 0 15 33 -12.389 -7.902 -0.006 IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 160 159 3 162 3 1 2 14 33 -14.983 -0.000 -13.637 -1.068 -3.363 -8.532 1.775 D 161 159 3 162 3 0 0 14 32 -12.389 -0.013 -6.781 IL 162 162 3 162 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 163 162 3 165 3 1 2 13 31 -15.069 -0.000 -13.723 -9.596 -11.361 1.999 -10.350 D 164 162 3 165 3 0 0 17 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - - - ML 166 165 3 168 3 1 2 11 30 -15.069 -0.000 -13.723 -9.596 -11.361 1.999 -10.350 D 167 165 3 168 3 0 0 16 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - U - - - ML 169 168 3 171 3 1 1 10 28 -1.129 -2.411 -1.495 -0.303 -0.116 -5.450 1.166 D 170 168 3 171 3 0 0 8 26 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 10 28 -8.642 -0.004 -11.342 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - U - - - ML 172 171 3 174 3 1 1 9 27 -14.437 -0.000 -13.091 -7.181 0.170 -2.626 1.436 D 173 171 3 174 3 0 0 7 26 -14.995 -0.002 -9.387 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.999 -11.030 -10.268 -10.365 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 179 122 1 180 3 0 3 712 1550 -15.069 -0.000 -13.723 IL 180 180 2 180 3 1 1 714 1551 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - G - - - ML 181 180 2 183 5 1 3 712 1550 -14.003 -0.000 -13.818 -14.031 -14.922 -1.415 -1.097 1.095 0.030 D 182 180 2 183 5 0 0 709 1547 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 712 1549 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 122 C G - - MP 184 183 3 188 6 2 3 711 1549 -14.944 -14.883 -0.032 -13.660 -5.519 -14.335 -11.804 -11.967 -11.203 -8.119 -9.600 -11.405 3.696 -10.493 -11.280 -1.056 -11.440 -0.058 -1.055 -11.690 0.010 -3.324 ML 185 183 3 188 6 1 1 709 1546 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 707 1545 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 704 1541 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 710 1548 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 710 1547 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 121 g c - - MP 190 189 6 194 6 2 3 709 1547 -14.912 -14.851 -0.000 -13.628 -13.908 -14.303 -9.002 -7.826 -8.860 0.763 -9.141 -9.505 2.404 -9.211 -9.154 2.618 -9.471 0.823 -0.008 -8.780 -3.529 -7.735 ML 191 189 6 194 6 1 1 707 1544 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 704 1542 -10.928 -9.657 -5.566 -9.635 -0.042 -7.849 -4.471 -6.038 1.968 -5.204 D 193 189 6 194 6 0 0 703 1540 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 708 1546 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 708 1545 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 120 G C - - MP 196 195 6 200 6 2 3 707 1545 -14.912 -14.851 -0.000 -13.628 -13.908 -14.303 -10.477 -9.080 -10.356 1.890 -10.627 -10.821 0.908 -10.584 -10.347 3.317 -10.668 -6.679 -1.221 -10.355 -8.038 -9.233 ML 197 195 6 200 6 1 1 705 1543 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 703 1541 -10.928 -9.657 -5.566 -9.635 -0.042 -7.849 -4.471 -6.038 1.968 -5.204 D 199 195 6 200 6 0 0 702 1539 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 706 1544 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 706 1544 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 119 G C - - MP 202 201 6 206 6 2 2 705 1543 -14.912 -14.851 -0.000 -13.628 -13.908 -14.303 -12.423 -9.727 -12.970 -7.022 -11.832 -10.848 1.592 -12.419 -10.914 3.664 -11.127 -2.272 -8.057 -11.268 -3.461 -11.825 ML 203 201 6 206 6 1 1 704 1541 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 702 1540 -10.928 -9.657 -5.566 -9.635 -0.042 -7.849 -4.583 -4.178 -5.394 1.956 D 205 201 6 206 6 0 0 701 1538 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 705 1542 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 704 1542 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 118 c g - - MP 208 207 6 212 4 2 2 703 1541 -14.127 -14.334 -0.000 -12.748 -9.451 -8.300 -9.295 -0.327 -9.399 -9.937 2.887 -9.553 -9.550 2.844 -9.868 -1.967 -2.101 -9.266 -3.054 -8.164 ML 209 207 6 212 4 1 1 702 1540 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 701 1539 -8.942 -7.971 -5.838 -0.034 -4.583 -4.178 -5.394 1.956 D 211 207 6 212 4 0 0 701 1538 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 703 1541 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 703 1540 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - c - - - ML 214 213 6 216 3 1 1 701 1539 -15.037 -0.000 -13.691 -2.524 0.950 -8.348 0.919 D 215 213 6 216 3 0 0 700 1538 -11.030 -0.035 -5.421 IL 216 216 3 216 3 1 1 701 1538 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - - - ML 217 216 3 219 3 1 1 700 1538 -15.069 -0.000 -13.723 -11.131 -4.580 -12.129 1.985 D 218 216 3 219 3 0 0 688 1525 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 700 1537 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - c - - - ML 220 219 3 222 3 1 1 699 1537 -15.069 -0.000 -13.723 -0.050 0.063 0.032 -0.049 D 221 219 3 222 3 0 0 682 1519 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 698 1535 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - g - - - ML 223 222 3 225 3 1 1 698 1536 -15.069 -0.000 -13.723 -0.050 -0.062 0.150 -0.049 D 224 222 3 225 3 0 0 670 1508 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 696 1534 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - g - - - ML 226 225 3 228 3 1 1 697 1535 -15.069 -0.000 -13.723 -0.050 -0.062 0.150 -0.049 D 227 225 3 228 3 0 0 648 1485 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 694 1531 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - G - - - ML 229 228 3 231 3 1 1 696 1534 -1.229 -0.803 -13.723 -3.508 -11.369 1.968 -10.347 D 230 228 3 231 3 0 0 540 1377 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 734 1571 -0.032 -5.523 -16.762 0.000 0.000 0.000 0.000 [ MATL 43 ] 117 - a - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 0.636 0.207 -1.572 -0.066 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Pro ACC arch-Pro-r2-033017 LENG 74 MAXL 747 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:37:36 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Pro-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Pro-r2-033017.sto NSEQ 520 EFFN 5.216980 CKSUM 3880981200 STATS LOCAL MSV -8.2954 0.71893 STATS LOCAL VITERBI -9.3500 0.71893 STATS LOCAL FORWARD -3.2586 0.71893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.60949 1.32416 1.19655 1.46210 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 0.00000 * 1 3.15139 3.95589 0.08432 3.96725 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 2 3.20143 4.18222 0.07526 4.10268 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 3 3.24962 4.18392 0.07265 4.13215 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 4 1.60092 1.55760 0.78181 2.03967 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 5 2.79524 0.36365 2.88732 1.67111 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 6 2.38532 0.49448 2.19823 1.67638 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 7 2.32991 3.33880 0.19377 3.13804 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 8 2.89073 2.16178 3.41228 0.22768 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 9 1.03976 1.87467 1.04418 1.95848 9 a - - , 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 10 2.33237 3.97526 0.15251 3.66475 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 11 2.29406 1.95666 0.87944 1.07061 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 12 2.31605 1.18018 0.85425 1.78076 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 13 3.06019 1.78648 2.87408 0.31594 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 14 0.05419 4.23835 3.88232 4.03346 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 15 3.65394 4.63424 0.05243 4.16851 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 16 2.82793 0.23826 3.48032 2.10316 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06915 4.39241 2.91069 1.46634 0.26236 1.09861 0.40547 17 2.47298 0.69127 3.09352 0.99592 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02617 4.34943 4.34943 1.46634 0.26236 1.85638 0.16988 18 1.97708 2.40729 2.94948 0.32975 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02617 4.34943 4.34943 1.46634 0.26236 0.37466 1.16323 19 3.65394 4.63424 0.05243 4.16851 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 20 3.65394 4.63424 0.05243 4.16851 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 21 1.47895 1.48744 2.44727 0.77731 21 u - - _ 1.38629 1.38629 1.38629 1.38629 0.96163 1.06058 1.30388 0.06998 2.69427 1.09861 0.40547 22 2.00035 1.42163 2.37341 0.63445 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03396 4.09251 4.09251 1.46634 0.26236 0.08722 2.48260 23 0.05419 4.23835 3.88232 4.03346 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 24 2.25362 3.07421 0.92250 0.79578 25 u - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 25 1.97671 0.91140 1.10012 2.06606 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 26 1.19161 0.94186 1.73560 2.03966 27 c - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 27 3.79998 2.17358 3.71371 0.17498 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 28 1.61433 1.90379 0.94593 1.33311 29 g - - , 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 29 2.38010 0.66113 1.85452 1.44961 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04164 4.39241 3.56082 1.46634 0.26236 1.09861 0.40547 30 1.80936 1.39852 0.87194 1.76528 31 g - - < 1.38629 1.38629 1.38629 1.38629 0.02547 4.37623 4.37623 1.46634 0.26236 1.45791 0.26491 31 1.54588 2.05496 0.59513 2.23224 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02547 4.37623 4.37623 1.46634 0.26236 1.45791 0.26491 32 2.14640 1.89305 0.44175 2.41272 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.02547 4.37623 4.37623 1.46634 0.26236 1.45791 0.26491 33 2.00165 1.16002 0.95047 1.80273 34 g - - < 1.38629 1.38629 1.38629 1.38629 0.02547 4.37623 4.37623 1.46634 0.26236 1.45791 0.26491 34 2.04970 0.93760 2.78943 0.87178 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02547 4.37623 4.37623 1.46634 0.26236 0.62632 0.76476 35 3.33544 3.04486 3.86198 0.11007 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 36 1.28890 1.49347 1.52224 1.26723 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 37 1.28784 1.54079 1.47293 1.27058 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 38 1.28784 1.54079 1.47293 1.27058 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 39 3.12575 4.32527 0.08037 3.90762 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.41003 1.12702 4.39241 3.81088 0.02238 1.09861 0.40547 40 1.07764 1.41976 1.97941 1.27411 117 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 41 2.04509 1.04441 1.06842 1.74193 118 c - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 42 2.68539 0.50387 1.78155 1.83733 119 C - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 43 2.45491 0.66923 1.91218 1.36936 120 C - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 44 1.97388 1.05075 1.28469 1.44956 121 c - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 45 1.78420 2.17358 0.55196 1.94858 122 G - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 46 1.41478 2.04426 1.93128 0.72860 123 u - - , 1.38629 1.38629 1.38629 1.38629 0.09258 4.39241 2.57634 1.46634 0.26236 1.09861 0.40547 47 2.92000 3.81683 0.12800 3.11872 124 G - - , 1.38629 1.38629 1.38629 1.38629 0.02678 4.32661 4.32661 1.46634 0.26236 0.28166 1.40459 48 0.33163 3.17887 1.68526 2.89650 125 A - - , 1.38629 1.38629 1.38629 1.38629 0.46499 1.02307 4.39241 0.06746 2.72979 1.09861 0.40547 49 3.99751 0.06608 4.49870 3.36802 127 C - - , 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 50 2.26873 0.71117 1.90097 1.36234 128 c - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 51 2.23446 0.83440 1.61467 1.34761 129 c - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 52 1.97603 1.77711 0.54602 2.18032 130 G - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 53 1.45234 2.51955 0.51519 2.42935 131 G - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 54 2.57450 3.89392 0.12706 3.78267 132 G - - < 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 55 3.57662 3.39141 4.11882 0.08110 133 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 56 3.22058 2.85937 3.74195 0.12891 134 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 57 3.99751 0.06608 4.49870 3.36802 135 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 58 0.27294 3.24575 1.90077 2.98644 136 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 59 0.05419 4.23835 3.88232 4.03346 137 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 60 0.17035 3.10997 2.84551 2.92013 138 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 61 3.57662 3.39141 4.11882 0.08110 139 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 62 3.95324 0.14916 3.73187 2.34939 140 C - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 63 2.67582 0.58239 2.35466 1.28136 141 C - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 64 2.45206 0.61755 1.63782 1.71360 142 C - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 65 1.52651 1.72126 0.75712 2.00359 143 g - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 66 1.71310 2.05853 0.58230 2.01412 144 G - - > 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 67 3.43962 0.22549 3.08738 2.08602 145 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 68 1.90118 2.34376 0.44301 2.18445 146 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 69 1.88420 3.05415 0.31801 2.61335 147 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 70 2.26910 0.85815 1.45641 1.42888 148 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 71 4.23345 0.08946 4.03620 2.92977 149 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 72 4.18917 0.09692 4.02317 2.82481 150 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02505 4.39241 4.39241 1.46634 0.26236 1.09861 0.40547 73 4.05160 0.09960 3.86975 2.87284 151 C - - ) 1.38629 1.38629 1.38629 1.38629 0.40426 1.13894 4.39241 1.10902 0.40030 1.09861 0.40547 74 0.05419 4.23835 3.88231 4.03346 155 A - - : 1.38629 1.38629 1.38629 1.38629 0.01260 4.37996 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Ser ACC arch-Ser-r2-033017 STATES 271 NODES 74 CLEN 84 W 635 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:31:22 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ser-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Ser-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ser-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ser-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ser-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Ser-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ser-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 736 EFFN 736.000000 CKSUM 3250103009 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.9365 0.71877 ECMLC 0.59773 -8.76253 1.82135 1600000 670921 0.001789 ECMGC 0.26306 -45.67621 -30.39281 1600000 22290 0.017945 ECMLI 0.58581 -8.53742 2.17790 1600000 638738 0.001879 ECMGI 0.27327 -41.62081 -26.92603 1600000 22184 0.018031 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 635 1307 -14.453 -15.698 -0.000 -12.152 IL 1 1 2 1 4 26 50 637 1309 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 27 52 638 1310 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 204 - G - - MR 3 2 3 5 5 34 57 637 1309 -2.994 -0.194 -14.318 -14.530 -15.421 -0.978 -11.707 1.804 -10.784 D 4 2 3 5 5 24 45 633 1305 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 32 57 638 1310 -0.591 -1.576 -13.415 -11.583 -12.689 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 200 G C - - MP 6 5 3 10 6 34 56 635 1307 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -13.377 -9.996 -15.730 -7.475 -15.006 -11.157 -9.299 -15.173 -11.365 3.991 -11.557 -3.528 -9.664 -11.625 -11.751 -14.836 ML 7 5 3 10 6 25 47 632 1304 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 25 47 632 1304 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 22 43 626 1298 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 26 49 634 1306 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 26 49 634 1306 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 199 C G - - MP 12 11 6 16 6 34 54 633 1305 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -11.655 -11.598 -11.286 -1.941 -9.825 -11.674 3.566 -10.649 -11.285 1.597 -11.567 -9.426 -0.889 -11.662 -1.675 -6.404 ML 13 11 6 16 6 25 47 630 1302 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 25 47 630 1302 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 22 42 625 1297 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 26 48 632 1304 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 26 49 632 1304 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 198 C G - - MP 18 17 6 22 6 32 52 631 1303 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -12.330 -12.348 -11.743 -1.599 -10.179 -11.976 3.591 -11.049 -11.804 1.209 -11.974 -10.363 0.377 -12.269 -7.870 -10.615 ML 19 17 6 22 6 25 46 629 1301 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 25 46 628 1300 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 22 42 623 1295 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 26 48 630 1302 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 26 48 630 1302 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 197 G C - - MP 24 23 6 28 6 31 50 629 1301 -5.247 -15.379 -0.039 -14.155 -14.435 -14.830 -13.163 -10.004 -14.791 -1.038 -14.895 -11.237 -1.578 -14.508 -11.357 3.919 -11.575 -4.481 -9.630 -11.677 -11.699 -13.618 ML 25 23 6 28 6 25 46 627 1299 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 25 45 626 1298 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 22 42 622 1294 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 29 51 631 1303 -1.023 -1.025 -6.173 -9.911 -10.687 -10.347 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 29 50 629 1301 -1.035 -0.977 -10.634 -8.802 -9.907 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 194 G C - - MP 30 29 6 34 6 29 48 627 1299 -4.853 -15.379 -0.051 -14.155 -14.435 -14.830 -10.528 -9.103 -10.446 1.720 -11.508 -11.094 1.474 -10.922 -10.535 3.250 -10.885 -5.626 -1.392 -10.425 -8.677 -9.327 ML 31 29 6 34 6 24 45 625 1297 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 24 45 625 1297 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 22 41 621 1293 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 28 49 628 1300 -1.017 -1.019 -6.559 -10.297 -11.073 -10.733 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 27 47 626 1298 -6.545 -0.024 -10.057 -8.224 -9.330 0.000 0.000 0.000 0.000 [ MATP 7 ] 10 192 G C - - MP 36 35 6 40 6 27 46 625 1297 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -13.016 -10.026 -14.244 -3.045 -14.295 -11.296 0.811 -14.001 -11.357 3.804 -11.590 -5.187 -2.947 -11.711 -11.352 -13.027 ML 37 35 6 40 6 24 44 623 1295 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 23 43 623 1295 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 21 41 620 1293 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 25 45 624 1296 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 25 45 624 1296 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 11 191 G C - - MP 42 41 6 46 4 25 44 623 1295 -14.659 -14.866 -0.000 -13.280 -12.537 -10.032 -13.262 1.179 -14.537 -11.600 -9.278 -13.217 -11.324 3.742 -11.646 -1.887 -3.645 -11.895 -11.518 -11.920 ML 43 41 6 46 4 23 43 622 1294 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 22 42 621 1293 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 21 41 620 1292 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 24 44 623 1295 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 24 43 622 1294 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 12 - U - - - ML 48 47 6 50 3 23 42 621 1293 -15.568 -0.000 -14.222 -12.177 -5.887 -13.350 1.994 D 49 47 6 50 3 21 41 619 1291 -6.174 -1.687 -0.566 IL 50 50 3 50 3 23 43 622 1294 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 13 - G - - - ML 51 50 3 53 2 22 41 620 1292 -16.223 -0.000 0.729 -2.264 1.033 -3.515 D 52 50 3 53 2 21 40 619 1291 -8.445 -0.004 IL 53 53 3 53 2 22 42 620 1292 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 21 40 619 1291 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 18 587 1259 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 18 587 1259 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 2 176 368 -0.000 -13.565 -12.973 -13.613 [ MATP 15 ] 14 68 G C - - MP 58 57 1 62 6 2 5 176 368 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -12.083 -9.941 -12.447 -2.829 -13.460 -11.644 1.361 -12.564 -11.230 3.528 -11.575 0.710 -3.103 -11.724 -10.642 -11.187 ML 59 57 1 62 6 1 2 174 366 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 174 365 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 170 362 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 175 367 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 175 367 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 67 C G - - MP 64 63 6 68 6 2 4 174 366 -15.439 -15.379 -0.191 -3.010 -14.435 -14.830 -12.488 -12.770 -11.805 -9.006 -3.131 -1.340 3.542 -11.071 -11.909 -8.978 -12.029 -11.174 1.042 -12.322 0.832 -10.711 ML 65 63 6 68 6 1 2 173 364 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 173 364 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 169 361 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 174 365 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 173 365 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 66 C G - - MP 70 69 6 74 6 2 4 172 364 -15.248 -15.187 -0.058 -13.964 -4.661 -14.639 -10.709 -0.866 -10.533 0.284 -3.527 -11.128 3.649 -9.971 -10.461 0.304 -10.858 -8.175 -3.305 -10.812 -2.285 -4.119 ML 71 69 6 74 6 1 2 171 363 -13.315 -13.661 -0.006 -8.070 -13.511 -11.041 1.996 -8.688 -7.936 -8.058 MR 72 69 6 74 6 1 2 171 363 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 168 360 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 172 363 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 172 363 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 65 g a - - MP 76 75 6 80 4 2 3 170 362 -14.607 -5.184 -0.040 -13.229 -1.162 -1.103 -6.777 -0.789 -2.991 -0.639 0.859 -7.127 2.326 1.200 -7.418 -2.072 1.460 -3.062 0.341 -2.202 ML 77 75 6 80 4 1 1 169 361 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 2 171 362 -10.060 -0.036 -6.957 -6.017 -6.187 1.982 -6.638 -5.289 D 79 75 6 80 4 0 0 168 359 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 170 362 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 170 361 -1.465 -1.446 -1.885 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - - - ML 82 81 6 84 3 1 2 168 360 -15.530 -0.000 -14.184 1.911 -10.909 -2.073 -10.570 D 83 81 6 84 3 0 0 167 359 -11.780 -0.021 -6.171 IL 84 84 3 84 3 1 1 169 360 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - G - - - ML 85 84 3 87 3 1 2 167 359 -15.568 -0.000 -14.222 -3.265 -11.866 1.962 -10.843 D 86 84 3 87 3 0 0 163 354 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 168 359 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - C - - - ML 88 87 3 90 3 1 2 166 358 -1.034 -0.967 -14.222 -3.938 1.658 -6.501 -0.380 D 89 87 3 90 3 0 0 160 351 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 2 166 358 -1.046 -0.956 -12.887 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - G - - - ML 91 90 3 93 3 1 2 164 356 -15.568 -0.000 -14.222 -6.041 -11.875 1.994 -10.849 D 92 90 3 93 3 0 0 157 348 -6.174 -1.687 -0.566 IL 93 93 3 93 3 1 1 164 356 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 94 93 3 96 3 1 2 163 355 -15.568 -0.000 -14.222 -10.094 -11.855 1.999 -10.844 D 95 93 3 96 3 0 0 151 343 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 163 354 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 97 96 3 99 3 1 1 162 354 -1.201 -3.614 -1.049 -0.126 -0.410 -2.467 1.104 D 98 96 3 99 3 0 0 126 317 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 2 170 361 -0.139 -3.447 -15.211 0.000 0.000 0.000 0.000 [ MATL 25 ] 61 - u - - - ML 100 99 3 102 3 1 1 8 27 -14.615 -0.000 -13.269 -1.967 0.737 -2.086 0.881 D 101 99 3 102 3 0 0 7 25 -15.940 -0.001 -10.332 IL 102 102 3 102 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 62 - A - - - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -11.517 -10.759 -10.851 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 1 564 1236 -15.568 -0.000 -14.222 IL 108 108 2 108 3 1 1 565 1237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 69 - G - - - ML 109 108 2 111 5 1 2 564 1236 -14.502 -0.000 -14.318 -14.530 -15.421 -2.909 -11.862 1.951 -10.841 D 110 108 2 111 5 0 0 561 1233 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 564 1236 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 70 148 c g - - MP 112 111 3 116 6 2 2 563 1235 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -10.564 -9.819 -2.506 -0.488 -9.892 -11.671 2.999 -10.270 -10.405 1.226 -10.931 1.919 -0.028 -10.944 -7.354 -9.202 ML 113 111 3 116 6 1 1 560 1232 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 560 1232 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 555 1227 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 562 1234 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 562 1234 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 71 147 C G - - MP 118 117 6 122 6 2 2 561 1233 -15.439 -15.379 -0.020 -14.155 -6.200 -14.830 -9.883 -9.538 -9.882 1.231 -8.780 -10.747 3.093 -9.412 -9.736 1.133 -10.250 -4.485 1.509 -10.087 -6.243 -6.322 ML 119 117 6 122 6 1 1 559 1231 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 559 1231 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 554 1226 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 560 1232 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 560 1232 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 72 146 G C - - MP 124 123 6 128 6 2 2 559 1231 -15.420 -15.359 -0.000 -14.135 -14.415 -14.810 -10.824 -9.711 -10.538 2.192 -10.225 -11.020 -0.101 -10.628 -10.826 3.040 -11.054 -7.382 -0.707 -10.579 0.720 -9.465 ML 125 123 6 128 6 1 1 557 1229 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 558 1230 -10.755 -9.484 -0.073 -9.462 -4.596 -7.676 -4.344 -3.958 -5.149 1.948 D 127 123 6 128 6 0 0 552 1224 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 558 1230 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 558 1230 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 73 145 G C - - MP 130 129 6 134 6 2 2 557 1229 -15.439 -15.379 -0.016 -14.155 -14.435 -6.511 -13.355 -9.997 -15.606 -7.466 -14.996 -11.165 -9.298 -15.093 -11.365 3.939 -11.559 -0.629 -9.661 -11.630 -11.746 -14.660 ML 131 129 6 134 6 1 1 555 1227 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 555 1227 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 551 1223 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 556 1228 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 556 1228 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 74 144 g c - - MP 136 135 6 140 4 2 2 555 1227 -14.643 -14.850 -0.000 -13.264 -10.412 -9.293 -10.337 1.884 -10.396 -11.209 2.207 -10.452 -10.401 2.633 -10.818 -5.579 0.543 -10.482 -7.773 -9.123 ML 137 135 6 140 4 1 1 554 1226 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 553 1225 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 551 1223 -8.468 -8.150 -6.165 -0.030 IL 140 140 5 140 4 1 1 555 1227 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 554 1226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 75 - C - - - ML 142 141 6 144 3 1 1 553 1225 -15.552 -0.000 -14.206 -11.155 1.846 -11.676 -1.310 D 143 141 6 144 3 0 0 551 1223 -10.553 -6.066 -0.023 IL 144 144 3 144 3 1 1 554 1226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 76 - U - - - ML 145 144 3 147 3 1 1 552 1224 -15.552 -0.000 -14.206 -1.100 -6.289 -9.353 1.815 D 146 144 3 147 3 0 0 551 1223 -10.553 -0.049 -4.945 IL 147 147 3 147 3 1 1 552 1224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 77 - c - - - ML 148 147 3 150 3 1 1 551 1223 -15.568 -0.000 -14.222 -0.014 0.121 -0.088 -0.027 D 149 147 3 150 3 0 0 537 1209 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 550 1222 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 78 - g - - - ML 151 150 3 153 3 1 1 550 1222 -15.568 -0.000 -14.222 0.063 -0.088 0.094 -0.078 D 152 150 3 153 3 0 0 528 1200 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 548 1220 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 79 - a - - - ML 154 153 3 156 3 1 1 549 1221 -15.568 -0.000 -14.222 0.102 -0.007 -0.088 -0.013 D 155 153 3 156 3 0 0 510 1182 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 546 1218 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 80 - G - - - ML 157 156 3 159 3 1 1 548 1220 -1.679 -0.540 -14.222 0.617 -10.596 1.301 -10.437 D 158 156 3 159 3 0 0 433 1105 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 590 1262 -0.040 -5.209 -16.498 0.000 0.000 0.000 0.000 [ MATL 41 ] 143 - A - - - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.843 -1.285 -10.756 -10.060 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 1 7 50 73 -15.568 -0.000 -14.222 IL 165 165 2 165 3 1 8 53 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 149 - U - - - ML 166 165 2 168 2 1 7 50 73 -1.023 -0.977 -11.338 -0.526 -12.276 1.725 D 167 165 2 168 2 0 5 48 72 -8.445 -0.004 IL 168 168 3 168 2 1 6 49 73 -10.424 -0.001 0.000 0.000 0.000 0.000 [ BIF 45 ] - - - - - - B 169 168 3 170 208 0 5 48 72 [ BEGL 46 ] - - - - - - S 170 169 1 171 4 0 0 28 46 -0.164 -10.535 -12.973 -3.229 [ MATP 47 ] 151 168 G C - - MP 171 170 1 175 6 2 4 28 46 -15.276 -15.215 -0.000 -13.992 -14.272 -14.667 -10.276 -9.153 -10.093 0.355 -10.004 -10.725 1.708 -10.246 -10.312 3.248 -10.623 -6.768 0.790 -10.132 -7.429 -2.335 ML 172 170 1 175 6 1 1 27 45 -6.956 -7.302 -0.657 -1.711 -7.152 -4.682 -0.262 0.742 -0.983 -0.019 MR 173 170 1 175 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 1 175 6 0 0 21 38 -16.238 -14.936 -10.733 -11.415 -11.433 -0.002 IL 175 175 5 175 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 152 167 c g - - MP 177 176 6 181 6 2 4 26 44 -15.277 -15.216 -0.002 -9.801 -14.273 -14.668 -9.593 -5.445 -9.586 0.180 -8.482 -6.030 2.626 -9.127 -9.459 2.463 -9.965 -6.827 1.485 -9.760 -1.660 -8.174 ML 178 176 6 181 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 20 38 -16.238 -14.936 -10.733 -4.798 -11.433 -0.054 IL 181 181 5 181 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 153 166 C G - - MP 183 182 6 187 4 2 2 24 42 -1.247 -14.701 -2.350 -1.386 -9.642 -9.346 -9.636 -1.907 -8.495 -10.469 3.420 -9.151 -9.496 1.547 -6.441 -4.565 0.667 -9.823 -1.143 -8.217 ML 184 182 6 187 4 1 1 23 41 -0.623 -6.202 -2.768 -2.393 -1.216 1.298 -0.836 -0.863 MR 185 182 6 187 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 17 34 -11.608 -11.290 -9.305 -0.003 IL 187 187 5 187 4 1 2 23 41 -1.497 -11.446 -0.632 -13.931 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 157 - C - - - ML 189 188 6 191 3 1 1 17 33 -14.718 -0.160 -3.253 -1.889 1.019 -1.145 0.324 D 190 188 6 191 3 0 0 16 32 -15.821 -0.017 -6.433 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 158 - G - - - ML 192 191 3 194 3 1 1 16 31 -15.475 -0.000 -14.129 -2.587 -3.404 1.001 0.798 D 193 191 3 194 3 0 0 15 31 -13.009 -1.606 -0.575 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 159 - C - - - ML 195 194 3 197 3 1 1 15 30 -15.506 -0.016 -6.506 -1.022 1.033 -4.400 0.500 D 196 194 3 197 3 0 0 14 30 -12.441 -0.220 -2.823 IL 197 197 3 197 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 160 - c - - - ML 198 197 3 200 3 1 1 14 28 -15.545 -0.255 -2.625 0.100 0.705 -1.704 -0.012 D 199 197 3 200 3 0 0 13 30 -11.084 -6.597 -0.016 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 161 - A - - - ML 201 200 3 203 3 1 1 13 26 -1.612 -1.231 -2.019 1.066 -1.095 0.006 -1.206 D 202 200 3 203 3 0 0 13 26 -0.685 -2.732 -2.135 IL 203 203 3 203 3 1 1 13 26 -2.035 -0.404 -11.971 0.000 0.000 0.000 0.000 [ MATL 55 ] 165 - g - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 0.054 -0.606 0.956 -1.456 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 [ BEGR 57 ] - - - - - - S 208 169 1 209 3 0 1 33 58 -15.568 -0.196 -2.975 IL 209 209 2 209 3 1 2 37 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 169 - c - - - ML 210 209 2 212 3 1 1 29 52 -15.372 -0.781 -1.258 0.093 0.420 -0.163 -0.510 D 211 209 2 212 3 0 2 36 61 -5.054 -0.048 -8.410 IL 212 212 3 212 3 1 1 41 65 -1.088 -0.952 -6.301 0.000 0.000 0.000 0.000 [ MATL 59 ] 172 - g - - - ML 213 212 3 215 3 1 2 27 46 -14.913 -0.000 -13.567 -1.702 -3.627 0.991 0.700 D 214 212 3 215 3 0 0 26 45 -15.535 -0.267 -2.566 IL 215 215 3 215 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 173 - C - - - ML 216 215 3 218 5 1 1 26 45 -14.411 -0.000 -14.226 -14.438 -15.330 -5.255 1.930 -5.275 -2.875 D 217 215 3 218 5 0 0 24 43 -10.939 -6.783 -10.201 -0.019 -8.488 IL 218 218 3 218 5 1 1 28 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 174 190 g c - - MP 219 218 3 223 6 2 2 25 44 -15.349 -15.288 -0.000 -14.064 -14.344 -14.739 -9.549 -8.724 -9.474 0.682 -8.949 -10.209 2.346 -5.528 -9.553 2.589 -9.972 -2.053 1.578 -9.509 -6.350 -5.407 ML 220 218 3 223 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 221 218 3 223 6 1 1 24 43 -12.837 -11.566 -0.017 -11.545 -6.678 -9.758 -7.046 1.990 -7.506 -6.103 D 222 218 3 223 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 223 223 5 223 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 224 224 6 224 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 175 189 u a - - MP 225 224 6 229 6 2 2 23 42 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -9.610 -5.558 -9.533 0.144 -9.022 -5.661 2.296 -6.511 -9.619 2.054 -10.035 -0.648 2.348 -5.624 -6.422 -6.193 ML 226 224 6 229 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 227 224 6 229 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 228 224 6 229 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 229 229 5 229 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 230 230 6 230 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 176 188 G C - - MP 231 230 6 235 6 2 2 21 40 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -13.420 -5.644 -15.995 -1.353 -15.026 -5.683 -9.299 -15.337 -11.367 3.958 -11.554 -7.936 -9.670 -5.692 -11.759 -15.237 ML 232 230 6 235 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 233 230 6 235 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 234 230 6 235 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 235 235 5 235 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 236 236 6 236 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 177 187 G C - - MP 237 236 6 241 6 2 2 19 38 -15.439 -15.379 -0.000 -14.155 -14.435 -14.830 -12.540 -6.961 -13.242 1.050 -14.250 -11.389 -3.350 -13.334 -11.282 3.778 -11.559 -5.299 -3.752 -11.665 -11.207 -12.005 ML 238 236 6 241 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 6 241 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 6 241 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 178 186 G C - - MP 243 242 6 247 4 2 2 17 36 -14.659 -14.866 -0.000 -13.280 -13.395 -9.996 -15.835 -7.482 -15.011 -11.151 -9.298 -15.239 -11.366 3.999 -11.556 -7.933 -9.666 -11.621 -11.753 -14.991 ML 244 242 6 247 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 246 242 6 247 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 247 247 5 247 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 248 248 6 248 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 179 - U - - - ML 249 248 6 251 3 1 1 15 33 -15.568 -0.000 -14.222 -12.833 -11.464 -14.393 2.000 D 250 248 6 251 3 0 0 19 37 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 180 - U - - - ML 252 251 3 254 3 1 1 13 32 -15.568 -0.000 -14.222 -12.833 -11.464 -14.393 2.000 D 253 251 3 254 3 0 0 18 36 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 181 - C - - - ML 255 254 3 257 3 1 1 12 31 -15.568 -0.000 -14.222 -12.038 2.000 -12.846 -10.504 D 256 254 3 257 3 0 0 17 35 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 182 - A - - - ML 258 257 3 260 3 1 1 11 29 -15.568 -0.000 -14.222 1.471 -10.492 0.295 -10.409 D 259 257 3 260 3 0 0 16 34 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 183 - A - - - ML 261 260 3 263 3 1 1 9 28 -15.568 -0.000 -14.222 1.999 -11.517 -10.759 -10.851 D 262 260 3 263 3 0 0 15 33 -6.174 -1.687 -0.566 IL 263 263 3 263 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 184 - A - - - ML 264 263 3 266 3 1 1 8 26 -15.568 -0.000 -14.222 1.817 -6.462 -2.255 -1.965 D 265 263 3 266 3 0 0 13 32 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 185 - U - - - ML 267 266 3 269 2 1 1 1 1 * 0.000 -12.232 -6.136 -13.428 1.995 D 268 266 3 269 2 0 0 0 0 * 0.000 IL 269 269 3 269 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 270 269 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Ser ACC arch-Ser-r2-033017 LENG 84 MAXL 620 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:31:22 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Ser-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Ser-r2-033017.sto NSEQ 736 EFFN 6.510864 CKSUM 3250103009 STATS LOCAL MSV -8.4249 0.71877 STATS LOCAL VITERBI -10.0054 0.71877 STATS LOCAL FORWARD -2.7106 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62237 1.27954 1.16941 1.54246 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 0.00000 * 1 3.41521 4.44174 0.05886 4.38070 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 2 2.51910 0.61752 1.64333 1.67742 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 3 2.51148 0.59609 1.78015 1.61306 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 4 2.72492 3.44732 0.12983 3.71440 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04165 3.48192 4.60091 0.92663 0.50399 1.09861 0.40547 5 1.58673 1.89023 0.61146 2.28466 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04845 3.29000 4.60091 0.88501 0.53223 1.09861 0.40547 6 2.46030 2.31773 0.27449 2.88000 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 7 1.92942 3.41494 0.24689 3.20251 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 8 3.69883 3.41635 4.23361 0.07481 12 U - - , 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 9 1.00357 2.37778 0.85046 2.17632 13 g - - , 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 10 2.11649 2.03365 0.39887 2.55607 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 11 2.75773 0.54451 2.55253 1.27814 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 12 1.73325 0.78413 1.82048 1.58561 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.04845 4.60091 3.29000 1.46634 0.26236 1.09861 0.40547 13 1.63602 1.51097 1.24282 1.21745 17 u - - < 1.38629 1.38629 1.38629 1.38629 0.04284 4.57332 3.45433 1.46634 0.26236 0.43123 1.04899 14 0.13173 3.72227 2.65358 3.54597 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02072 4.57998 4.57998 1.46634 0.26236 0.50273 0.92856 15 3.19426 4.51874 0.07101 4.09533 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 16 2.58384 0.39612 3.31505 1.53592 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.51340 0.93776 4.60091 0.68162 0.70481 1.09861 0.40547 17 3.76202 4.84664 0.04478 4.36645 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 18 3.90176 4.90787 0.04051 4.41414 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 19 1.38126 1.61051 2.22305 0.81945 25 u - - _ 1.38629 1.38629 1.38629 1.38629 1.33670 1.05072 0.94777 2.38086 0.09703 1.09861 0.40547 20 1.70014 1.17127 2.16589 0.93466 61 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03280 4.12680 4.12680 1.46634 0.26236 0.05052 3.01051 21 0.04066 4.52109 4.15140 4.32565 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07042 2.84801 4.60091 0.62957 0.76105 1.09861 0.40547 22 1.16175 1.59500 1.31231 1.53733 65 a - - > 1.38629 1.38629 1.38629 1.38629 0.12527 4.60091 2.22840 1.46634 0.26236 1.09861 0.40547 23 1.79825 1.85979 0.65688 1.83109 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.02251 4.49814 4.49814 1.46634 0.26236 0.17100 1.85036 24 1.66350 2.53458 0.42842 2.52961 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 25 2.79553 0.51778 1.93366 1.61718 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 26 3.06094 4.43315 0.07974 4.02182 69 G - - , 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 27 2.02447 1.02899 1.17239 1.60474 70 c - - < 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 28 1.88365 0.90206 1.69366 1.35329 71 c - - < 1.38629 1.38629 1.38629 1.38629 0.03124 4.60091 3.87700 1.46634 0.26236 1.09861 0.40547 29 1.45775 2.13021 0.71293 1.84375 72 g - - < 1.38629 1.38629 1.38629 1.38629 0.02051 4.59018 4.59018 1.46634 0.26236 0.67788 0.70865 30 3.27800 4.29846 0.06845 4.20847 73 G - - < 1.38629 1.38629 1.38629 1.38629 0.02910 4.60091 3.98244 1.46634 0.26236 1.09861 0.40547 31 1.59703 1.40304 0.97595 1.74400 74 g - - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59227 4.59227 1.46634 0.26236 1.34965 0.30020 32 3.40372 0.18750 4.01163 2.12345 75 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59227 4.59227 1.46634 0.26236 1.34965 0.30020 33 2.11022 2.81299 3.29940 0.24608 76 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59227 4.59227 1.46634 0.26236 0.73118 0.65651 34 1.28672 1.45742 1.56189 1.26851 77 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 35 1.26135 1.54345 1.48288 1.28698 78 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 36 1.24984 1.50901 1.55930 1.26572 79 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 37 1.00334 3.32344 0.60389 2.98311 80 G - - _ 1.38629 1.38629 1.38629 1.38629 0.30658 1.37044 4.60091 3.59323 0.02789 1.09861 0.40547 38 0.20005 2.39119 3.22433 2.99558 143 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02910 4.60091 3.98244 1.46634 0.26236 1.09861 0.40547 39 1.92801 1.05559 1.30513 1.44632 144 c - - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59227 4.59227 1.46634 0.26236 0.73118 0.65651 40 4.28421 0.10732 4.12299 2.63410 145 C - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 41 2.32476 0.78785 1.73985 1.30260 146 c - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 42 1.51435 1.81773 0.82229 1.72468 147 g - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 43 1.80557 1.61626 0.93219 1.41350 148 g - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 44 2.96156 1.80666 3.49614 0.28270 149 U - - , 1.38629 1.38629 1.38629 1.38629 0.65703 0.93915 2.40072 0.05061 3.00889 1.09861 0.40547 45 1.86556 1.66760 0.71288 1.79421 151 g - - < 1.38629 1.38629 1.38629 1.38629 0.02543 4.51686 4.25577 1.46634 0.26236 2.40032 0.09507 46 2.01054 1.13251 1.23554 1.37364 152 c - - < 1.38629 1.38629 1.38629 1.38629 0.02216 4.51360 4.51360 1.46634 0.26236 2.16593 0.12176 47 2.33236 0.76274 1.62431 1.42920 153 c - - < 1.38629 1.38629 1.38629 1.38629 1.00677 1.09906 1.19925 0.47277 0.97623 2.40032 0.09507 48 1.66666 1.04551 1.98397 1.13293 157 c - - _ 1.38629 1.38629 1.38629 1.38629 0.10580 4.17367 2.46515 1.46634 0.26236 0.06512 2.76385 49 1.83516 2.29562 0.96701 1.02306 158 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02135 4.55052 4.55052 1.46634 0.26236 1.10740 0.40110 50 1.74139 0.88521 2.63884 1.07689 159 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02968 4.56736 3.97097 1.46634 0.26236 0.49166 0.94575 51 1.28631 1.15559 2.07795 1.26000 160 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07470 4.58821 2.78375 1.46634 0.26236 0.66231 0.72496 52 0.86855 1.88552 1.50876 1.57260 161 a - - _ 1.38629 1.38629 1.38629 1.38629 0.56127 1.38040 1.72575 0.34782 1.22493 0.98184 0.46940 53 1.28511 1.79268 1.01949 1.62920 165 g - - _ 1.38629 1.38629 1.38629 1.38629 0.13801 4.39039 2.14975 1.46634 0.26236 0.09575 2.39347 54 1.66070 1.73575 0.66961 2.10523 166 G - - > 1.38629 1.38629 1.38629 1.38629 0.02218 4.51278 4.51278 1.46634 0.26236 2.36198 0.09897 55 1.56558 1.31952 1.01718 1.81920 167 g - - > 1.38629 1.38629 1.38629 1.38629 0.02268 4.51360 4.46843 1.46634 0.26236 2.42702 0.09244 56 2.00045 0.78361 1.55458 1.62611 168 c - - > 1.38629 1.38629 1.38629 1.38629 0.13590 4.51309 2.15325 1.46634 0.26236 0.19344 1.73794 57 1.25456 1.34916 1.59460 1.37693 169 a - - , 1.38629 1.38629 1.38629 1.38629 0.41698 4.23856 1.11921 1.17134 0.37099 0.17300 1.83969 58 1.61500 2.15252 1.04920 1.09452 172 g - - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26537 4.26537 1.46634 0.26236 0.24304 1.53359 59 3.30111 0.14105 3.78381 2.63147 173 C - - , 1.38629 1.38629 1.38629 1.38629 0.02132 4.55180 4.55180 1.46634 0.26236 2.05044 0.13774 60 1.90953 1.26502 1.10024 1.44043 174 g - - < 1.38629 1.38629 1.38629 1.38629 0.02132 4.55180 4.55180 1.46634 0.26236 0.29754 1.35729 61 2.00124 1.22460 1.31013 1.20007 175 u - - < 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 62 2.98138 4.07036 0.09016 3.99426 176 G - - < 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 63 1.98775 3.31337 0.24106 3.19884 177 G - - < 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 64 3.44293 4.42679 0.05804 4.38512 178 G - - < 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 65 3.85304 3.63517 4.39981 0.06174 179 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 66 3.85304 3.63517 4.39981 0.06174 180 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 67 4.27939 0.05020 4.73604 3.63680 181 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 68 0.44595 3.34591 1.28270 3.05192 182 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 69 0.04066 4.52109 4.15140 4.32565 183 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 70 0.25423 2.99294 2.51196 2.37263 184 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 71 3.71929 3.44602 4.25553 0.07290 185 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 72 4.43047 0.07283 4.27457 3.11419 186 C - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 73 3.38600 0.27504 3.13121 1.81431 187 C - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 74 4.06317 0.10847 3.89706 2.72872 188 C - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 75 1.33243 1.45733 1.12322 1.72554 189 g - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 76 1.60358 1.18181 1.18613 1.67825 190 c - - > 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 77 3.41479 0.28957 3.23094 1.72033 191 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 78 3.10725 0.30792 2.22599 2.18620 192 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04845 3.29000 4.60091 0.47270 0.97636 1.09861 0.40547 79 2.51423 0.67706 1.78445 1.41438 194 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04165 3.48192 4.60091 0.92663 0.50399 1.09861 0.40547 80 3.90623 0.15148 3.33062 2.46893 197 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 81 1.79560 1.87690 0.54436 2.29562 198 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 82 1.94188 1.72877 0.54772 2.29463 199 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02029 4.60091 4.60091 1.46634 0.26236 1.09861 0.40547 83 4.45342 0.07592 4.30169 3.03807 200 C - - ) 1.38629 1.38629 1.38629 1.38629 0.12578 2.22429 4.60091 1.12401 0.39301 1.09861 0.40547 84 2.07290 3.78334 0.19946 3.43382 204 G - - : 1.38629 1.38629 1.38629 1.38629 0.51838 0.90507 * 1.10950 0.40006 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Thr ACC arch-Thr-r2-033017 STATES 236 NODES 63 CLEN 74 W 613 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 11:48:17 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Thr-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Thr-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Thr-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Thr-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Thr-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Thr-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Thr-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 563 EFFN 563.000000 CKSUM 2877624250 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.1650 0.71897 ECMLC 0.65840 -7.67017 2.05908 1600000 726405 0.001652 ECMGC 0.28816 -50.79588 -35.95348 1600000 28809 0.013885 ECMLI 0.64873 -7.43700 2.38065 1600000 700194 0.001714 ECMGI 0.31086 -46.66503 -32.99636 1600000 28015 0.014278 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 613 1237 -14.068 -15.313 -0.001 -11.767 IL 1 1 2 1 4 21 43 615 1239 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 44 616 1239 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 185 - U - - MR 3 2 3 5 5 27 51 615 1238 -14.117 -0.000 -13.932 -14.145 -15.036 -12.425 -11.069 -13.967 2.000 D 4 2 3 5 5 18 40 612 1235 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 21 43 614 1238 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 184 G C - - MP 6 5 3 10 6 28 50 614 1237 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -12.988 -3.189 -15.309 -7.090 -14.621 -10.778 -8.917 -14.766 -10.983 3.971 -11.176 -2.327 -9.281 -11.245 -11.367 -14.397 ML 7 5 3 10 6 20 41 610 1234 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 41 610 1234 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 16 37 605 1228 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 20 42 613 1236 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 21 43 612 1236 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 183 C G - - MP 12 11 6 16 6 27 49 612 1235 -15.057 -14.996 -0.011 -7.072 -14.053 -14.448 -12.102 -12.383 -11.420 -8.620 -9.770 -11.564 3.955 -10.686 -11.523 -2.679 -11.643 -10.786 -2.944 -11.936 -2.310 -10.325 ML 13 11 6 16 6 19 41 608 1232 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 41 609 1232 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 16 37 603 1227 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 20 42 611 1234 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 42 611 1234 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 182 C G - - MP 18 17 6 22 6 26 47 610 1233 -15.046 -14.986 -0.000 -13.762 -14.042 -14.437 -12.091 -12.372 -11.409 -8.609 -9.760 -11.553 3.964 -10.675 -11.513 -8.581 -11.633 -10.775 -1.390 -11.926 -7.462 -10.314 ML 19 17 6 22 6 20 42 605 1229 -9.067 -9.414 -4.128 -0.107 -9.263 -6.793 -3.332 1.873 -4.109 -2.467 MR 20 17 6 22 6 19 40 607 1230 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 37 602 1225 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 20 42 609 1232 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 42 609 1232 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 181 g c - - MP 24 23 6 28 6 24 45 608 1231 -15.046 -14.986 -0.000 -13.762 -14.042 -14.437 -9.553 -9.253 -9.529 1.416 -8.379 -10.333 2.000 -9.043 -9.400 2.221 -9.896 -6.832 1.880 -9.721 -0.053 -8.121 ML 25 23 6 28 6 20 41 604 1228 -9.067 -9.414 -4.128 -0.107 -9.263 -6.793 -2.765 -2.553 -3.540 1.847 MR 26 23 6 28 6 18 40 605 1228 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 36 601 1224 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 41 607 1230 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 41 607 1230 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 180 C G - - MP 30 29 6 34 6 22 43 606 1229 -15.046 -14.986 -0.000 -13.762 -14.042 -14.437 -9.480 -9.176 -9.467 -0.402 -8.327 -10.294 3.480 -8.983 -9.330 1.298 -9.835 -1.198 -0.350 -9.659 -1.364 -8.052 ML 31 29 6 34 6 19 40 603 1226 -9.067 -9.414 -4.128 -0.107 -9.263 -6.793 -3.332 1.873 -4.109 -2.467 MR 32 29 6 34 6 18 39 603 1227 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 15 36 600 1223 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 19 41 605 1228 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 41 605 1228 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 179 g c - - MP 36 35 6 40 6 20 41 604 1227 -15.046 -14.986 -0.000 -13.762 -14.042 -14.437 -9.224 -5.861 -9.144 -0.601 -8.653 -9.871 2.252 -9.082 -0.247 2.974 -9.649 -3.318 0.242 -9.169 -0.825 -7.885 ML 37 35 6 40 6 18 39 602 1225 -9.067 -9.414 -4.128 -0.107 -9.263 -6.793 -2.765 -2.553 -3.540 1.847 MR 38 35 6 40 6 17 38 602 1225 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 15 36 599 1223 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 40 603 1226 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 39 603 1226 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 178 G C - - MP 42 41 6 46 4 18 39 602 1225 -14.262 -14.469 -0.000 -12.883 -12.008 -6.496 -12.614 -0.556 -13.887 -11.185 -8.686 -12.661 -10.896 3.682 -11.219 0.127 0.458 -11.419 -10.887 -11.312 ML 43 41 6 46 4 17 38 601 1224 -6.219 -6.402 -0.080 -5.131 -2.765 -2.553 -3.540 1.847 MR 44 41 6 46 4 16 37 600 1223 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 15 36 599 1222 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 38 602 1225 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 38 601 1225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 16 37 600 1223 -15.183 -0.000 -13.837 -8.273 -6.098 -1.957 1.897 D 49 47 6 50 3 14 35 598 1222 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 37 600 1224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 15 36 599 1222 -15.837 -0.000 1.585 -9.892 -0.023 -6.187 D 52 50 3 53 2 14 35 598 1221 -8.445 -0.004 IL 53 53 3 53 2 15 36 599 1223 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 14 35 598 1221 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 4 481 1058 -15.183 -0.000 -13.837 IL 56 56 2 56 3 1 5 481 1057 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 107 - A - - - ML 57 56 2 59 3 1 4 481 1058 -15.183 -0.000 -13.837 1.652 -3.083 -3.811 -0.580 D 58 56 2 59 3 0 0 448 1025 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 4 479 1055 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 108 - G - - - ML 60 59 3 62 3 1 3 480 1057 -2.111 -0.380 -13.837 -2.923 -2.730 1.889 -6.323 D 61 59 3 62 3 0 0 391 967 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 7 525 1101 -0.046 -4.993 -15.467 0.000 0.000 0.000 0.000 [ MATL 47 ] 153 - G - - - ML 63 62 3 65 3 1 2 51 95 -15.183 -0.001 -10.181 -0.629 -8.124 1.392 -0.463 D 64 62 3 65 3 0 0 49 93 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 2 52 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 154 - U - - - ML 66 65 3 68 3 1 1 50 94 -15.182 -0.193 -2.998 -0.263 -1.662 -1.678 1.344 D 67 65 3 68 3 0 0 48 93 -7.239 -0.577 -1.631 IL 68 68 3 68 3 1 2 51 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 155 - C - - - ML 69 68 3 71 5 1 3 49 93 -13.925 -0.000 -13.740 -13.952 -14.844 -11.305 1.999 -12.037 -9.869 D 70 68 3 71 5 0 0 37 81 -11.572 -7.416 -10.834 -0.012 -9.121 IL 71 71 3 71 5 1 1 49 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 156 177 G C - - MP 72 71 3 76 6 2 3 48 92 -4.061 -14.806 -0.089 -13.582 -13.862 -14.257 -10.587 -8.877 -10.616 -1.469 -11.654 -10.667 1.830 -11.036 -10.272 3.507 -10.598 -1.016 -2.277 -10.321 -8.807 -9.483 ML 73 71 3 76 6 1 1 45 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 34 78 -13.470 -12.199 -8.107 -12.177 -0.007 -10.390 -6.829 -8.598 1.994 -7.590 D 75 71 3 76 6 0 0 40 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 53 97 -7.616 -0.038 -5.797 -9.534 -10.310 -9.971 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 52 96 -0.603 -6.377 -11.801 -1.605 -11.074 0.000 0.000 0.000 0.000 [ MATP 51 ] 158 173 C G - - MP 78 77 6 82 6 2 3 24 42 -14.777 -14.717 -0.000 -13.493 -13.773 -14.168 -9.093 -3.803 -9.090 -0.165 -7.971 -9.933 3.360 -8.619 -8.953 1.257 -9.465 -0.684 0.744 -9.271 -3.966 -7.672 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 22 40 -13.975 -12.704 -8.612 -12.682 -0.005 -10.895 0.256 -7.505 1.482 -7.172 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 159 172 G C - - MP 84 83 6 88 6 2 3 22 40 -14.777 -14.717 -0.000 -13.493 -13.773 -14.168 -12.716 -2.910 -15.042 -2.124 -14.265 0.041 -3.082 -14.515 -10.702 3.846 -10.890 -7.268 -3.366 -10.950 -11.037 -14.195 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 21 39 -13.975 -12.704 -0.008 -12.682 -7.816 -10.895 -7.771 1.506 0.197 -6.983 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 160 171 G C - - MP 90 89 6 94 6 2 3 20 38 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -12.399 -9.667 -13.205 -0.303 -13.201 -10.992 -2.925 -13.024 -10.966 3.761 -11.218 -7.493 0.579 -11.352 -10.466 -11.979 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 161 170 G C - - MP 96 95 6 100 4 2 2 18 36 -14.273 -14.480 -0.080 -4.221 -12.917 -9.617 -14.948 -1.985 -14.586 -10.803 -8.916 -14.524 -10.981 3.976 -11.181 -7.535 -9.270 -11.261 -11.351 -13.905 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 162 - U - - - ML 102 101 6 104 3 1 1 15 33 -15.104 -0.000 -13.758 -4.262 -9.826 -11.169 1.981 D 103 101 6 104 3 0 0 14 33 -12.396 -7.909 -0.006 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 163 - U - - - ML 105 104 3 107 3 1 1 13 32 -15.104 -0.000 -13.758 -10.775 -3.172 -11.691 1.959 D 106 104 3 107 3 0 0 14 32 -12.396 -7.909 -0.006 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 164 - C - - - ML 108 107 3 110 3 1 1 12 31 -15.104 -0.000 -13.758 -11.449 1.999 -12.196 -9.994 D 109 107 3 110 3 0 0 13 31 -0.019 -7.909 -6.788 IL 110 110 3 110 3 1 1 12 31 -5.727 -0.032 -8.427 0.000 0.000 0.000 0.000 [ MATL 58 ] 166 - A - - - ML 111 110 3 113 3 1 1 11 30 -15.183 -0.000 -13.837 1.366 -10.106 0.507 -10.022 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 167 - A - - - ML 114 113 3 116 3 1 1 10 28 -15.183 -0.000 -13.837 1.973 -10.524 -4.091 -6.048 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 168 - A - - - ML 117 116 3 119 3 1 1 8 26 -15.183 -0.000 -13.837 1.818 -6.234 -2.115 -2.122 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 169 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -5.592 -2.428 -4.389 1.905 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 535 1153 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 0 15 535 1153 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 2 33 54 -0.001 -13.182 -12.589 -13.229 [ MATP 15 ] 10 32 G C - - MP 127 126 1 131 6 2 4 33 54 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -12.877 -9.618 -14.774 -3.011 -14.568 -10.818 -8.916 -14.400 -10.979 3.974 -11.185 -2.674 -9.265 -11.271 -11.343 -13.682 ML 128 126 1 131 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 32 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 33 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 31 C G - - MP 133 132 6 137 6 2 4 31 52 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -12.102 -12.383 -3.186 -8.619 -9.770 -11.564 3.972 -10.686 -11.523 -8.592 -11.643 -10.785 -2.422 -11.936 -7.473 -10.325 ML 134 132 6 137 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 30 U A - - MP 139 138 6 143 6 2 4 29 50 -15.057 -14.996 -0.095 -3.970 -14.053 -14.448 -12.088 -12.315 -11.418 -0.655 -6.415 -11.576 -1.141 -10.690 -11.515 -3.368 -11.642 -10.627 3.887 -11.941 -7.485 -10.320 ML 140 138 6 143 6 1 1 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 29 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 29 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 29 C G - - MP 145 144 6 149 4 2 4 28 48 -14.177 -14.384 -0.000 -12.798 -11.998 -12.276 -11.319 -3.477 -9.671 -3.507 3.533 -10.586 -11.422 -8.477 -11.543 -10.669 0.627 -11.834 0.893 -0.250 ML 146 144 6 149 4 1 1 27 47 -9.080 -9.263 -0.011 -7.992 -7.062 -6.387 -8.003 1.992 MR 147 144 6 149 4 1 1 28 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 27 47 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 29 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 28 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 3 26 46 -15.183 -0.000 -13.837 1.904 -10.495 -1.966 -10.188 D 152 150 6 153 3 0 0 24 44 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 27 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 2 25 45 -15.183 -0.000 -13.837 -9.710 -11.474 1.999 -10.463 D 155 153 3 156 3 0 0 23 43 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 24 44 -15.183 -0.369 -2.146 -2.679 1.702 -1.550 -2.011 D 158 156 3 159 3 0 0 22 43 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 160 159 3 162 3 1 1 23 43 -5.762 -0.339 -2.389 -2.077 1.690 -5.541 -0.955 D 161 159 3 162 3 0 0 21 41 -14.459 -3.527 -0.131 IL 162 162 3 162 3 1 1 23 43 -4.009 -0.107 -6.709 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - u - - - ML 163 162 3 165 3 1 1 22 42 -14.552 -0.000 -13.206 -4.610 0.871 -2.631 0.978 D 164 162 3 165 3 0 0 21 41 -15.107 -0.186 -3.051 IL 165 165 3 165 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 1 21 41 -15.120 -0.000 -13.775 -9.672 -5.008 1.988 -10.396 D 167 165 3 168 3 0 0 19 39 -12.064 -7.577 -0.008 IL 168 168 3 168 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - - - ML 169 168 3 171 3 1 1 20 40 -15.120 -0.000 -13.775 -4.269 -11.427 1.981 -10.402 D 170 168 3 171 3 0 0 19 39 -12.064 -0.017 -6.456 IL 171 171 3 171 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - - - ML 172 171 3 174 3 1 1 19 39 -1.790 -0.493 -13.837 -2.795 -0.064 -4.359 1.511 D 173 171 3 174 3 0 0 14 35 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 19 39 -1.314 -0.743 -11.537 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.579 -10.094 0.015 -10.010 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 518 1136 -15.183 -0.000 -13.837 IL 180 180 2 180 3 1 1 519 1137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - G - - - ML 181 180 2 183 5 1 1 518 1136 -14.117 -0.000 -13.932 -14.145 -15.036 -1.250 -9.818 1.814 -4.001 D 182 180 2 183 5 0 0 515 1133 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 518 1135 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 106 C G - - MP 184 183 3 188 6 2 2 517 1135 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -9.431 -9.119 -9.421 1.326 -4.259 -10.250 3.222 -8.946 -9.288 1.702 -9.794 -3.855 -0.500 -9.604 -3.950 -8.007 ML 185 183 3 188 6 1 1 514 1132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 514 1131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 508 1125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 516 1133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 516 1133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 105 C G - - MP 190 189 6 194 6 2 2 515 1133 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -10.080 -9.593 -10.054 -1.294 -9.036 -10.955 3.215 -9.610 -9.898 1.997 -10.397 -3.283 1.129 -10.357 -6.524 -8.664 ML 191 189 6 194 6 1 1 512 1130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 511 1129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 506 1124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 514 1132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 514 1131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 104 u a - - MP 196 195 6 200 6 2 2 513 1131 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -9.592 -9.221 -9.584 -0.965 -8.497 -10.443 1.938 -9.123 -9.443 2.163 -9.951 -5.466 2.818 -9.795 -5.963 -3.783 ML 197 195 6 200 6 1 1 510 1128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 509 1127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 505 1122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 512 1130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 512 1129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 103 G C - - MP 202 201 6 206 6 2 2 511 1129 -15.057 -14.996 -0.000 -13.773 -14.053 -14.448 -12.697 -9.870 -13.327 -7.239 -11.976 -10.931 1.851 -12.690 -11.067 3.629 -11.260 -7.794 -8.205 -11.374 -9.513 -12.233 ML 203 201 6 206 6 1 1 509 1126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 507 1125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 504 1121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 510 1128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 510 1127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 38 102 C G - - MP 208 207 6 212 4 2 2 509 1127 -14.273 -14.480 -0.000 -12.894 -12.100 -12.373 -11.419 2.679 -9.772 -11.566 3.214 -10.686 -11.522 -8.585 -11.643 -10.761 -2.293 -11.937 -3.267 -10.324 ML 209 207 6 212 4 1 1 507 1125 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 504 1122 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 502 1120 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 509 1126 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 508 1126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - C - - - ML 214 213 6 216 3 1 1 507 1125 -15.183 -0.000 -13.837 -11.610 1.412 -12.778 0.421 D 215 213 6 216 3 0 0 500 1118 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 507 1125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - U - - - ML 217 216 3 219 3 1 1 506 1124 -15.183 -0.000 -13.837 -3.910 -9.855 -11.170 1.975 D 218 216 3 219 3 0 0 497 1114 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 506 1123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - u - - - ML 220 219 3 222 3 1 1 505 1123 -15.183 -0.000 -13.837 0.005 -0.005 -0.006 0.006 D 221 219 3 222 3 0 0 492 1109 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 504 1122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - u - - - ML 223 222 3 225 3 1 1 504 1122 -15.183 -0.000 -13.837 0.005 -0.005 -0.006 0.006 D 224 222 3 225 3 0 0 483 1101 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 503 1120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - u - - - ML 226 225 3 228 3 1 1 503 1121 -15.183 -0.000 -13.837 0.005 -0.005 -0.006 0.006 D 227 225 3 228 3 0 0 467 1085 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 501 1118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - - - ML 229 228 3 231 3 1 1 502 1120 -1.756 -0.507 -13.837 1.991 -11.082 -5.374 -10.455 D 230 228 3 231 3 0 0 398 1016 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 542 1160 -0.043 -5.090 -15.918 0.000 0.000 0.000 0.000 [ MATL 42 ] 101 - A - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 1.983 -5.143 -5.861 -10.010 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Thr ACC arch-Thr-r2-033017 LENG 74 MAXL 592 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 11:48:17 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Thr-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Thr-r2-033017.sto NSEQ 563 EFFN 5.287575 CKSUM 2877624250 STATS LOCAL MSV -8.0656 0.71897 STATS LOCAL VITERBI -9.2999 0.71897 STATS LOCAL FORWARD -3.2010 0.71897 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56081 1.30187 1.20409 1.52305 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 0.00000 * 1 3.04449 4.07159 0.08716 3.97386 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 2 3.90897 0.13673 3.57451 2.52940 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 3 3.94903 0.12938 3.83428 2.51983 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 4 1.77219 1.29494 1.32185 1.23965 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 5 2.13560 0.79658 1.58595 1.48632 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 6 1.92882 1.36352 0.94609 1.55748 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 7 2.00692 2.78545 0.35537 2.27320 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 8 2.70968 2.71522 2.66679 0.22593 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 9 0.40636 3.09077 1.49179 2.75682 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 10 3.10412 4.17490 0.08003 4.09396 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 11 4.30133 0.06898 4.28873 3.23441 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 12 2.70426 1.87342 2.82068 0.32862 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 13 2.31612 0.73096 2.15638 1.19022 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 14 0.15545 3.52178 2.54958 3.31563 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 15 3.66928 4.65109 0.05159 4.18383 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 16 2.22966 0.43882 2.44085 1.82916 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.21403 4.47853 1.70748 1.46634 0.26236 1.09861 0.40547 17 2.09086 0.48526 2.87171 1.58825 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.19151 3.62721 1.91258 0.83068 0.57226 2.06101 0.13619 18 1.91705 1.08100 2.33555 0.87480 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16849 4.16849 1.46634 0.26236 0.20031 1.70635 19 3.37567 4.07296 0.07499 3.86190 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02373 4.44614 4.44614 1.46634 0.26236 1.75928 0.18895 20 3.28359 4.40732 0.07090 3.97572 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02373 4.44614 4.44614 1.46634 0.26236 0.42211 1.06613 21 2.15100 1.51615 2.74428 0.51119 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27494 1.47389 4.47853 0.56201 0.84411 1.09861 0.40547 22 0.40412 3.13904 1.46827 2.83378 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07379 4.47853 2.81697 1.46634 0.26236 1.09861 0.40547 23 1.65399 2.31027 0.56290 1.96664 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.02414 4.42888 4.42888 1.46634 0.26236 0.32185 1.29027 24 0.36686 2.98688 1.73098 2.53147 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 25 3.45447 4.42286 0.06032 4.20431 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 26 4.17987 0.10434 3.99605 2.72738 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 27 2.07637 3.40957 0.23817 2.92820 33 G - - , 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 28 1.83472 0.90943 1.48502 1.55548 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 29 2.22285 0.88725 1.43748 1.41722 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 30 2.15315 1.26855 1.37702 1.04893 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 31 2.47039 1.76266 0.39609 2.64628 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 32 1.27040 0.74630 2.42544 1.85327 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 33 2.58754 0.57612 3.22566 1.13013 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 34 2.89322 2.99351 3.58495 0.14300 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 35 1.27370 1.51653 1.53607 1.25347 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 36 1.27371 1.51653 1.53607 1.25347 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 37 1.27371 1.51653 1.53607 1.25347 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 38 0.06501 4.10717 3.62296 3.92276 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.28185 1.45132 4.47853 3.50692 0.03045 1.09861 0.40547 39 0.08153 3.76413 3.50409 3.68741 101 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 40 2.11144 2.59998 0.68114 1.20858 102 G - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 41 2.90189 0.43285 1.68772 2.19392 103 C - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 42 1.17387 1.47436 1.15142 1.92608 104 g - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 43 1.59529 1.54581 0.80623 1.98432 105 g - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 44 1.76580 1.59965 0.82572 1.66569 106 g - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 45 0.45477 2.36178 2.48785 1.67097 107 A - - , 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 46 2.43008 2.99505 0.20819 2.99808 108 G - - , 1.38629 1.38629 1.38629 1.38629 0.21929 1.68436 4.47853 3.43424 0.03278 1.09861 0.40547 47 1.57082 2.57817 0.64433 1.65445 153 G - - , 1.38629 1.38629 1.38629 1.38629 0.02357 4.47853 4.42726 1.46634 0.26236 1.09861 0.40547 48 1.43433 1.94369 2.08365 0.70507 154 u - - , 1.38629 1.38629 1.38629 1.38629 0.12427 4.47794 2.24904 1.46634 0.26236 1.06472 0.42285 49 3.83276 0.07745 4.35597 3.21771 155 C - - , 1.38629 1.38629 1.38629 1.38629 0.02538 4.37972 4.37972 1.46634 0.26236 2.42388 0.09275 50 1.98300 1.79376 0.52818 2.24115 156 G - - < 1.38629 1.38629 1.38629 1.38629 0.02538 4.37972 4.37972 1.46634 0.26236 2.42388 0.09275 51 2.01200 0.90946 1.51567 1.41110 158 c - - < 1.38629 1.38629 1.38629 1.38629 0.07157 4.37972 2.87277 1.46634 0.26236 2.42388 0.09275 52 2.29304 2.63436 0.26194 2.85212 159 G - - < 1.38629 1.38629 1.38629 1.38629 0.02656 4.33471 4.33471 1.46634 0.26236 0.14516 2.00165 53 2.05295 2.73382 0.35390 2.25638 160 G - - < 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 54 3.01962 4.11709 0.08637 4.03790 161 G - - < 1.38629 1.38629 1.38629 1.38629 0.06502 4.47853 2.96414 1.46634 0.26236 1.09861 0.40547 55 2.92495 2.98577 3.58274 0.14153 162 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02394 4.43745 4.43745 1.46634 0.26236 1.87895 0.16576 56 3.11705 2.72373 3.63662 0.14648 163 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02394 4.43745 4.43745 1.46634 0.26236 0.36456 1.18581 57 3.94137 0.06976 4.45046 3.31626 164 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 58 0.54056 3.08955 1.17664 2.75284 166 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 59 0.08860 3.84452 3.30874 3.61830 167 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 60 0.28016 2.86881 2.40514 2.32980 168 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 61 2.71925 2.43630 3.13231 0.21943 169 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 62 4.09074 0.10685 3.93108 2.73352 170 C - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 63 2.39419 0.40512 2.54586 1.81124 171 C - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 64 2.95389 0.28888 2.70859 2.02396 172 C - - > 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 65 1.58476 1.71340 0.81614 1.75669 173 g - - > 1.38629 1.38629 1.38629 1.38629 0.06462 2.97159 4.47853 1.16143 0.37548 1.09861 0.40547 66 2.41964 0.65965 1.56019 1.69326 177 C - - > 1.38629 1.38629 1.38629 1.38629 0.02870 4.47853 4.07777 1.46634 0.26236 1.09861 0.40547 67 2.44604 0.44310 2.60016 1.62425 178 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02309 4.47292 4.47292 1.46634 0.26236 1.25075 0.33728 68 1.71878 1.07226 1.20865 1.71547 179 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02309 4.47292 4.47292 1.46634 0.26236 1.25075 0.33728 69 1.73111 1.75284 0.70306 1.86716 180 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02309 4.47292 4.47292 1.46634 0.26236 1.25075 0.33728 70 1.46936 1.41843 1.11280 1.61346 181 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02309 4.47292 4.47292 1.46634 0.26236 1.25075 0.33728 71 2.77259 4.00853 0.10969 3.76232 182 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02309 4.47292 4.47292 1.46634 0.26236 0.84999 0.55760 72 2.87659 3.71045 0.11178 3.69036 183 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 73 4.17042 0.10599 3.94559 2.72144 184 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02296 4.47853 4.47853 1.46634 0.26236 1.09861 0.40547 74 3.59349 3.40612 4.13598 0.07976 185 U - - : 1.38629 1.38629 1.38629 1.38629 0.56724 0.83723 * 1.11043 0.39961 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Trp ACC arch-Trp-r2-033017 STATES 476 NODES 143 CLEN 154 W 839 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 12:11:46 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Trp-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Trp-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Trp-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Trp-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Trp-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Trp-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Trp-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 170 EFFN 170.000000 CKSUM 524992266 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.0065 0.71798 ECMLC 0.61420 -9.70410 0.72244 1600000 725074 0.001655 ECMGC 0.33054 -49.33083 -35.66798 1600000 36590 0.010932 ECMLI 0.60568 -9.52622 0.98295 1600000 697517 0.001720 ECMGI 0.34451 -44.98498 -32.11127 1600000 33747 0.011853 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 839 1659 -12.351 -13.597 -0.002 -10.050 IL 1 1 2 1 4 20 46 842 1662 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 48 842 1662 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 268 - A - - MR 3 2 3 5 5 25 52 841 1661 -2.773 -0.229 -12.219 -12.431 -13.323 1.971 -8.993 -8.570 -3.743 D 4 2 3 5 5 17 41 838 1658 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 24 52 843 1663 -0.606 -1.553 -11.557 -9.725 -10.830 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 264 G C - - MP 6 5 3 10 6 26 52 840 1660 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -11.303 -7.931 -13.613 -5.406 -12.923 -9.094 -7.228 -13.072 -9.300 3.994 -9.492 -5.863 -7.594 -9.561 -9.676 -12.699 ML 7 5 3 10 6 18 43 837 1657 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 43 836 1657 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 39 831 1651 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 45 839 1659 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 45 839 1659 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 263 G C - - MP 12 11 6 16 6 25 50 838 1658 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -11.176 -7.937 -12.995 -1.881 -12.753 -9.139 -1.669 -12.624 -9.295 3.943 -9.502 -5.846 -7.549 -9.590 -9.590 -11.892 ML 13 11 6 16 6 18 43 835 1655 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 43 835 1655 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 14 38 829 1650 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 45 837 1657 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 45 837 1657 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 262 G C - - MP 18 17 6 22 6 24 48 836 1656 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -9.473 -2.869 -9.618 1.138 -10.761 -9.085 -1.610 -10.071 -8.892 3.702 -9.178 -1.796 -5.980 -8.955 -7.804 -8.499 ML 19 17 6 22 6 18 42 833 1653 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 42 833 1653 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 38 828 1648 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 19 44 835 1655 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 44 835 1655 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 261 G C - - MP 24 23 6 28 6 22 46 834 1654 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -8.927 -7.357 -8.840 1.289 -9.306 -8.991 0.223 -9.186 -8.721 3.591 -9.003 -5.015 -5.088 -8.613 -2.008 -7.747 ML 25 23 6 28 6 17 42 831 1652 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 41 831 1651 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 14 38 827 1647 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 43 833 1653 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 43 833 1653 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 260 c g - - MP 30 29 6 34 6 20 44 832 1652 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -7.786 -7.489 -7.775 0.129 -6.631 -8.600 2.477 -7.290 -7.638 2.055 -8.144 -5.062 2.104 -7.963 -0.330 -6.359 ML 31 29 6 34 6 17 41 830 1650 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 40 829 1649 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 37 826 1646 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 42 831 1651 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 42 831 1651 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 259 c g - - MP 36 35 6 40 6 18 42 830 1650 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -9.835 -9.871 -9.372 -5.899 -7.846 -9.676 2.773 -8.703 -9.405 1.021 -9.635 -7.818 2.510 -9.791 0.485 -8.181 ML 37 35 6 40 6 16 40 828 1648 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 39 828 1648 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 37 825 1645 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 41 829 1649 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 40 829 1649 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 258 G C - - MP 42 41 6 46 4 16 40 828 1648 -12.555 -12.762 -0.001 -11.176 -10.091 -7.910 -10.550 1.644 -12.025 -9.699 -6.948 -10.622 -9.186 3.653 -9.558 -2.807 -2.972 -9.821 -9.082 -9.230 ML 43 41 6 46 4 15 39 827 1647 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 38 826 1646 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 37 825 1645 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 39 828 1648 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 39 827 1647 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 14 38 826 1646 -13.466 -0.000 -12.120 -10.421 -9.224 -11.770 1.999 D 49 47 6 50 3 13 36 824 1644 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 38 826 1646 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 13 37 825 1645 -14.117 -0.000 -0.039 -8.637 1.595 -8.178 D 52 50 3 53 2 12 36 824 1644 -8.445 -0.004 IL 53 53 3 53 2 14 37 825 1645 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 12 36 824 1644 [ BEGR 124 ] - - - - - - S 55 54 1 56 3 0 3 188 408 -13.466 -0.000 -12.120 IL 56 56 2 56 3 1 1 189 409 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 125 ] 222 - c - - - ML 57 56 2 59 3 1 3 188 408 -13.466 -0.000 -12.120 -0.502 0.888 -0.472 -0.469 D 58 56 2 59 3 0 0 176 396 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 188 407 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 126 ] 223 - G - - - ML 60 59 3 62 3 1 2 187 407 -3.163 -0.171 -12.120 -3.068 -1.168 1.749 -3.741 D 61 59 3 62 3 0 0 161 381 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 2 212 432 -0.121 -3.641 -11.405 0.000 0.000 0.000 0.000 [ MATL 127 ] 237 - A - - - ML 63 62 3 65 3 1 1 30 49 -13.466 -0.406 -2.028 1.502 -6.991 -0.488 -1.162 D 64 62 3 65 3 0 0 32 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 128 ] 238 - U - - - ML 66 65 3 68 3 1 1 29 48 -13.061 -0.001 -11.715 -4.551 -4.031 -4.010 1.939 D 67 65 3 68 3 0 0 28 47 -12.870 -0.010 -7.262 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 129 ] 239 - C - - - ML 69 68 3 71 5 1 1 28 47 -12.404 -0.001 -12.219 -12.431 -13.323 -8.598 1.809 -9.145 -1.022 D 70 68 3 71 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 29 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 130 ] 240 257 G C - - MP 72 71 3 76 6 2 2 27 46 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -8.953 -7.415 -8.985 0.819 -10.344 -9.601 2.081 -9.361 -8.768 3.265 -9.183 -1.553 -5.687 -9.022 -7.469 -7.795 ML 73 71 3 76 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 131 ] 241 256 g u - - MP 78 77 6 82 6 2 2 25 44 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -7.691 -7.377 -7.689 -0.445 -6.574 -8.530 1.442 -7.221 -7.554 0.885 -8.065 2.371 2.281 -7.869 -2.039 -1.413 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 132 ] 242 255 G C - - MP 84 83 6 88 6 2 2 23 42 -3.208 -13.311 -0.166 -12.087 -12.367 -12.762 -11.239 -7.934 -13.275 -5.383 -12.841 -9.116 -0.871 -12.834 -9.297 3.921 -9.497 -1.920 -7.573 -9.575 -9.635 -12.244 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 22 40 -6.998 -7.261 -0.028 -8.917 -9.693 -9.353 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 133 ] 244 254 G C - - MP 90 89 6 94 6 2 2 21 39 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -10.058 -7.952 -10.498 2.212 -11.962 -9.843 -2.480 -10.525 -9.201 3.478 -9.599 -5.568 -7.177 -9.943 -9.091 -9.151 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 134 ] 245 253 G C - - MP 96 95 6 100 4 2 2 19 37 -12.555 -12.762 -0.001 -11.176 -11.303 -7.931 -13.613 -5.406 -12.923 -9.094 -7.228 -13.072 -9.300 3.994 -9.492 -5.863 -7.594 -9.561 -9.676 -12.699 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 135 ] 246 - U - - - ML 102 101 6 104 3 1 1 16 34 -13.466 -0.000 -12.120 -10.421 -9.224 -11.770 1.999 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 136 ] 247 - U - - - ML 105 104 3 107 3 1 1 15 33 -13.466 -0.000 -12.120 -8.955 -5.120 -9.841 1.988 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 137 ] 248 - C - - - ML 108 107 3 110 3 1 1 14 32 -13.466 -0.000 -12.120 -9.342 1.998 -9.912 -8.165 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 138 ] 249 - A - - - ML 111 110 3 113 3 1 1 12 31 -13.466 -0.000 -12.120 1.473 -8.328 0.284 -8.244 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 139 ] 250 - A - - - ML 114 113 3 116 3 1 1 11 29 -13.466 -0.000 -12.120 1.998 -9.499 -8.736 -8.847 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 140 ] 251 - A - - - ML 117 116 3 119 3 1 1 9 28 -13.466 -0.000 -12.120 1.850 -3.500 -2.162 -3.599 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 141 ] 252 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -10.421 -9.224 -11.770 1.999 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 142 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 17 800 1620 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 1 17 800 1620 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 33 52 -0.002 -11.484 -10.891 -11.531 [ MATP 15 ] 10 28 G C - - MP 127 126 1 131 6 2 3 33 52 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -10.708 -7.949 -11.682 -5.147 -12.618 -9.360 -7.219 -11.578 -9.267 3.518 -9.543 2.166 -7.490 -9.727 -9.530 -10.372 ML 128 126 1 131 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G - - MP 133 132 6 137 6 2 3 31 50 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -10.356 -10.607 -9.688 -6.831 -8.048 -9.843 3.554 -8.958 -9.786 -0.013 -9.913 -8.951 1.688 -10.201 -5.748 -8.588 ML 134 132 6 137 6 1 1 29 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 29 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 c g - - MP 139 138 6 143 6 2 2 29 48 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -10.129 -10.277 -9.555 -6.395 -1.647 -9.773 2.973 -8.851 -9.624 1.945 -9.797 -8.408 1.975 -10.024 -5.641 -8.413 ML 140 138 6 143 6 1 1 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 26 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 28 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 u u - - MP 145 144 6 149 4 2 2 27 46 -12.555 -12.762 -0.001 -11.176 -10.163 -10.329 -9.576 2.210 -2.568 -9.783 1.739 -8.868 -2.904 -6.373 -9.815 -8.492 -1.172 -10.051 0.851 2.450 ML 146 144 6 149 4 1 1 27 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 1 25 44 -13.466 -0.000 -12.120 1.998 -9.499 -8.736 -8.847 D 152 150 6 153 3 0 0 23 43 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 1 24 43 -13.466 -0.000 -12.120 -1.119 -9.354 1.822 -8.517 D 155 153 3 156 3 0 0 22 42 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 23 42 -13.466 -0.227 -2.783 -4.673 1.542 -7.170 0.059 D 158 156 3 159 3 0 0 21 41 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 160 159 3 162 3 1 1 22 41 -13.240 -0.001 -11.894 -2.907 1.928 -7.657 -4.156 D 161 159 3 162 3 0 0 20 39 -12.123 -7.636 -0.008 IL 162 162 3 162 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - A - - - ML 163 162 3 165 3 1 1 21 40 -13.240 -0.001 -11.894 1.049 0.007 -6.049 -0.134 D 164 162 3 165 3 0 0 20 39 -12.123 -0.016 -6.515 IL 165 165 3 165 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 166 165 3 168 3 1 1 20 39 -13.466 -0.000 -12.120 -8.019 -9.792 1.997 -8.780 D 167 165 3 168 3 0 0 18 38 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - - - ML 169 168 3 171 3 1 1 19 38 -13.466 -0.000 -12.120 -8.019 -9.792 1.997 -8.780 D 170 168 3 171 3 0 0 17 37 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 21 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - u - - - ML 172 171 3 174 3 1 1 18 37 -2.460 -0.290 -12.120 -1.157 0.589 -3.175 0.953 D 173 171 3 174 3 0 0 14 33 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 18 38 -1.372 -0.709 -9.150 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.998 -9.499 -8.736 -8.847 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 3 783 1603 -13.466 -0.000 -12.120 IL 180 180 2 180 3 1 2 784 1605 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - G - - - ML 181 180 2 183 5 1 4 783 1603 -12.404 -0.001 -12.219 -12.431 -13.323 -2.162 -0.548 1.611 -4.709 D 182 180 2 183 5 0 0 780 1600 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 783 1603 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 221 a u - - MP 184 183 3 188 6 2 4 782 1602 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -7.827 -6.700 -7.728 2.850 -7.888 -8.490 1.520 -7.961 -1.847 1.320 -8.284 0.928 0.223 -7.743 -5.210 -6.554 ML 185 183 3 188 6 1 1 779 1600 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 779 1599 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 774 1594 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 781 1601 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 781 1601 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 220 C G - - MP 190 189 6 194 6 2 4 780 1600 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -7.885 -7.594 -7.863 -1.955 -6.706 -8.673 3.534 -7.371 -7.729 0.171 -8.228 -0.760 0.291 -8.059 0.223 -6.452 ML 191 189 6 194 6 1 1 778 1598 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 777 1597 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 773 1593 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 779 1599 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 779 1599 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 219 G C - - MP 196 195 6 200 6 2 4 778 1598 -13.371 -13.311 -0.001 -12.087 -12.367 -12.762 -10.864 -7.951 -12.014 -2.421 -12.474 -9.273 -7.119 -11.837 -9.280 3.738 -9.528 -5.791 1.284 -9.673 -9.441 -10.750 ML 197 195 6 200 6 1 1 776 1596 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 775 1595 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 771 1592 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 777 1597 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 777 1597 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 218 G C - - MP 202 201 6 206 6 2 3 776 1596 -13.371 -13.311 -0.166 -12.087 -3.206 -12.762 -11.166 -8.016 -12.507 -5.446 -11.395 -9.154 0.801 -11.925 -9.325 3.828 -9.521 -5.941 -7.106 -9.609 -8.718 -11.448 ML 203 201 6 206 6 1 1 775 1595 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 773 1593 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 771 1591 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 776 1596 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 775 1595 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 217 G C - - MP 208 207 6 212 4 2 3 775 1595 -12.384 -12.591 -0.001 -11.005 -9.808 -7.769 -10.209 2.066 -11.765 -9.731 -6.792 -10.262 -9.016 3.522 -9.427 -5.365 -1.846 -9.776 -8.883 -8.866 ML 209 207 6 212 4 1 1 773 1593 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 770 1590 -9.650 -8.679 -6.547 -0.021 -5.160 -6.831 1.981 -5.903 D 211 207 6 212 4 0 0 770 1590 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 774 1594 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 774 1594 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - C - - - ML 214 213 6 216 3 1 2 773 1593 -13.296 -0.001 -11.950 -9.124 1.997 -9.679 -7.974 D 215 213 6 216 3 0 0 768 1589 -11.752 -7.265 -0.010 IL 216 216 3 216 3 1 1 773 1593 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - - - ML 217 216 3 219 3 1 2 772 1592 -13.296 -0.001 -11.950 -10.195 -9.028 -11.512 1.999 D 218 216 3 219 3 0 0 768 1589 -11.752 -7.265 -0.010 IL 219 219 3 219 3 1 1 772 1592 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - u - - - ML 220 219 3 222 3 1 2 771 1591 -13.296 -0.001 -11.950 0.018 -0.019 -0.021 0.021 D 221 219 3 222 3 0 0 768 1589 -11.752 -7.265 -0.010 IL 222 222 3 222 3 1 1 771 1591 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - u - - - ML 223 222 3 225 3 1 1 770 1590 -13.296 -0.001 -11.950 0.018 -0.019 -0.021 0.021 D 224 222 3 225 3 0 0 768 1589 -11.752 -0.021 -6.143 IL 225 225 3 225 3 1 1 769 1589 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - g - - - ML 226 225 3 228 3 1 1 769 1589 -13.466 -0.000 -12.120 -0.146 -0.183 0.390 -0.143 D 227 225 3 228 3 0 0 749 1569 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 767 1587 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - G - - - ML 229 228 3 231 3 1 1 768 1588 -13.466 -0.196 -2.978 -0.620 -9.075 1.742 -8.371 D 230 228 3 231 3 0 0 735 1555 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 770 1590 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - C - - - ML 232 231 3 234 3 1 1 772 1592 -13.271 -0.001 -11.925 0.259 1.020 -2.690 -0.691 D 233 231 3 234 3 0 0 694 1515 -11.932 -7.445 -0.009 IL 234 234 3 234 3 1 1 769 1589 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - G - - - ML 235 234 3 237 3 1 1 771 1591 -13.271 -0.001 -11.925 -5.400 -0.563 1.282 -0.204 D 236 234 3 237 3 0 0 693 1513 -11.932 -7.445 -0.009 IL 237 237 3 237 3 1 1 768 1588 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - G - - - ML 238 237 3 240 3 1 1 770 1590 -13.271 -0.001 -11.925 -1.248 -3.471 1.784 -4.467 D 239 237 3 240 3 0 0 692 1512 -11.932 -7.445 -0.009 IL 240 240 3 240 3 1 1 767 1587 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - u - - - ML 241 240 3 243 3 1 1 769 1589 -13.271 -0.001 -11.925 0.176 -0.079 -2.226 0.774 D 242 240 3 243 3 0 0 691 1511 -11.932 -7.445 -0.009 IL 243 243 3 243 3 1 1 766 1586 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - c - - - ML 244 243 3 246 3 1 1 768 1588 -13.271 -0.001 -11.925 -0.594 0.707 -0.023 -0.472 D 245 243 3 246 3 0 0 689 1510 -11.932 -7.445 -0.009 IL 246 246 3 246 3 1 1 765 1585 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - u - - - ML 247 246 3 249 3 1 1 767 1587 -13.271 -0.001 -11.925 0.263 -1.820 -0.389 0.810 D 248 246 3 249 3 0 0 688 1508 -11.932 -7.445 -0.009 IL 249 249 3 249 3 1 1 764 1584 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - a - - - ML 250 249 3 252 3 1 1 766 1586 -13.271 -0.001 -11.925 0.580 -0.445 -0.330 -0.037 D 251 249 3 252 3 0 0 687 1507 -11.932 -7.445 -0.009 IL 252 252 3 252 3 1 1 763 1583 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - a - - - ML 253 252 3 255 3 1 1 765 1585 -13.271 -0.276 -2.523 0.502 -0.313 -0.169 -0.169 D 254 252 3 255 3 0 0 686 1506 -11.932 -7.445 -0.009 IL 255 255 3 255 3 1 1 769 1589 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - g - - - ML 256 255 3 258 3 1 1 771 1591 -12.995 -0.001 -11.650 -0.656 -0.514 0.753 -0.030 D 257 255 3 258 3 0 0 684 1504 -13.053 -8.566 -0.004 IL 258 258 3 258 3 1 1 768 1588 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - G - - - ML 259 258 3 261 3 1 1 770 1590 -12.995 -0.001 -11.650 -1.282 -0.910 1.438 -1.529 D 260 258 3 261 3 0 0 683 1503 -13.053 -8.566 -0.004 IL 261 261 3 261 3 1 1 767 1587 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - a - - - ML 262 261 3 264 3 1 1 769 1589 -12.995 -0.001 -11.650 0.391 -0.117 0.147 -0.600 D 263 261 3 264 3 0 0 683 1503 -13.053 -8.566 -0.004 IL 264 264 3 264 3 1 1 766 1586 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - c - - - ML 265 264 3 267 3 1 1 768 1588 -12.995 -0.001 -11.650 -0.866 0.538 -0.690 0.464 D 266 264 3 267 3 0 0 682 1502 -13.053 -8.566 -0.004 IL 267 267 3 267 3 1 1 765 1585 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 53 - c - - - ML 268 267 3 270 3 1 1 767 1587 -12.995 -0.038 -5.288 -0.925 0.572 0.041 -0.062 D 269 267 3 270 3 0 0 681 1501 -13.053 -8.566 -0.004 IL 270 270 3 270 3 1 1 765 1585 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - g - - - ML 271 270 3 273 3 1 1 767 1587 -12.959 -0.001 -11.613 0.339 -2.324 0.647 -0.044 D 272 270 3 273 3 0 0 680 1501 -13.144 -8.657 -0.004 IL 273 273 3 273 3 1 1 764 1584 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - g - - - ML 274 273 3 276 3 1 1 766 1586 -12.959 -0.001 -11.613 0.335 -1.058 0.961 -1.681 D 275 273 3 276 3 0 0 680 1500 -13.144 -4.096 -0.087 IL 276 276 3 276 3 1 1 763 1583 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - - - ML 277 276 3 279 3 1 1 765 1585 -12.992 -0.021 -6.147 0.648 0.046 -0.406 -0.632 D 278 276 3 279 3 0 0 660 1480 -13.060 -4.646 -0.059 IL 279 279 3 279 3 1 1 762 1582 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - - - ML 280 279 3 282 3 1 1 765 1585 -12.994 -0.001 -11.648 0.564 -0.513 -0.383 0.076 D 281 279 3 282 3 0 0 638 1458 -13.057 -8.570 -0.004 IL 282 282 3 282 3 1 1 761 1581 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 58 - g - - - ML 283 282 3 285 3 1 1 764 1584 -12.994 -0.001 -11.648 0.635 -0.804 0.635 -1.638 D 284 282 3 285 3 0 0 636 1456 -13.057 -8.570 -0.004 IL 285 285 3 285 3 1 1 760 1580 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 59 - G - - - ML 286 285 3 288 3 1 1 763 1583 -12.994 -0.001 -11.648 -0.826 -0.121 1.162 -1.845 D 287 285 3 288 3 0 0 633 1454 -13.057 -8.570 -0.004 IL 288 288 3 288 3 1 1 759 1579 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 60 - G - - - ML 289 288 3 291 3 1 1 762 1582 -12.994 -0.001 -11.648 -0.158 -0.723 1.046 -1.209 D 290 288 3 291 3 0 0 631 1452 -13.057 -8.570 -0.004 IL 291 291 3 291 3 1 1 758 1578 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 61 - c - - - ML 292 291 3 294 3 1 1 761 1581 -12.994 -0.001 -11.648 -0.461 0.772 0.053 -0.919 D 293 291 3 294 3 0 0 629 1449 -13.057 -8.570 -0.004 IL 294 294 3 294 3 1 1 757 1577 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 62 - g - - - ML 295 294 3 297 3 1 1 760 1580 -12.994 -0.001 -11.648 -0.244 0.087 0.195 -0.076 D 296 294 3 297 3 0 0 627 1447 -13.057 -8.570 -0.004 IL 297 297 3 297 3 1 1 756 1576 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 63 - u - - - ML 298 297 3 300 3 1 1 759 1579 -12.994 -0.001 -11.648 -0.863 0.265 -0.336 0.542 D 299 297 3 300 3 0 0 625 1445 -13.057 -8.570 -0.004 IL 300 300 3 300 3 1 1 755 1575 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 64 - c - - - ML 301 300 3 303 3 1 1 758 1578 -12.994 -0.001 -11.648 -1.888 0.616 -0.232 0.428 D 302 300 3 303 3 0 0 622 1443 -13.057 -8.570 -0.004 IL 303 303 3 303 3 1 1 754 1574 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 65 - c - - - ML 304 303 3 306 3 1 1 757 1577 -12.994 -0.015 -6.638 -3.098 0.836 -1.266 0.751 D 305 303 3 306 3 0 0 620 1440 -13.057 -8.570 -0.004 IL 306 306 3 306 3 1 1 754 1574 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 66 - a - - - ML 307 306 3 309 3 1 1 756 1576 -12.980 -0.001 -11.634 0.211 0.103 0.121 -0.555 D 308 306 3 309 3 0 0 617 1438 -13.093 -8.606 -0.004 IL 309 309 3 309 3 1 1 753 1573 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 67 - a - - - ML 310 309 3 312 3 1 1 755 1575 -12.980 -0.001 -11.634 0.605 -0.114 0.371 -1.936 D 311 309 3 312 3 0 0 615 1435 -13.093 -8.606 -0.004 IL 312 312 3 312 3 1 1 752 1572 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 68 - a - - - ML 313 312 3 315 3 1 1 754 1574 -12.980 -0.033 -5.468 0.559 -0.736 -0.009 -0.101 D 314 312 3 315 3 0 0 612 1432 -13.093 -8.606 -0.004 IL 315 315 3 315 3 1 1 752 1572 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 69 - a - - - ML 316 315 3 318 3 1 1 754 1574 -12.947 -0.017 -6.417 0.474 -0.101 0.115 -0.746 D 317 315 3 318 3 0 0 609 1429 -13.170 -8.683 -0.004 IL 318 318 3 318 3 1 1 751 1571 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 70 - a - - - ML 319 318 3 321 3 1 1 754 1574 -12.931 -0.009 -7.340 0.768 -0.809 -0.364 -0.075 D 320 318 3 321 3 0 0 606 1427 -13.207 -8.720 -0.004 IL 321 321 3 321 3 1 1 750 1571 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 71 - g - - - ML 322 321 3 324 3 1 1 753 1573 -12.922 -0.068 -4.451 0.079 -1.130 0.767 -0.348 D 323 321 3 324 3 0 0 603 1424 -13.226 -8.739 -0.004 IL 324 324 3 324 3 1 1 751 1572 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 72 - u - - - ML 325 324 3 327 3 1 1 754 1574 -12.855 -0.036 -5.359 -0.058 -0.593 -0.211 0.597 D 326 324 3 327 3 0 0 600 1420 -13.361 -8.874 -0.003 IL 327 327 3 327 3 1 1 751 1572 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 73 - u - - - ML 328 327 3 330 3 1 1 754 1574 -12.820 -0.015 -6.641 -0.265 -0.416 -0.100 0.571 D 329 327 3 330 3 0 0 597 1417 -13.425 -8.938 -0.003 IL 330 330 3 330 3 1 1 751 1571 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 74 - u - - - ML 331 330 3 333 3 1 1 753 1573 -12.806 -0.206 -2.910 0.008 -1.788 0.167 0.662 D 332 330 3 333 3 0 0 594 1414 -13.449 -8.962 -0.003 IL 333 333 3 333 3 1 1 756 1576 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 75 - u - - - ML 334 333 3 336 3 1 1 759 1579 -12.601 -0.096 -3.964 0.385 -3.025 0.081 0.598 D 335 333 3 336 3 0 0 590 1410 -13.745 -5.870 -0.025 IL 336 336 3 336 3 1 1 758 1578 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 76 - u - - - ML 337 336 3 339 3 1 1 760 1581 -12.525 -0.001 -11.179 0.592 -2.618 -0.471 0.686 D 338 336 3 339 3 0 0 522 1342 -13.831 -9.344 -0.002 IL 339 339 3 339 3 1 1 757 1577 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 78 ] 77 - c - - - ML 340 339 3 342 3 1 1 759 1580 -12.525 -0.025 -5.902 -0.237 0.248 -0.239 0.159 D 341 339 3 342 3 0 0 504 1324 -13.831 -9.344 -0.002 IL 342 342 3 342 3 1 1 757 1577 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 79 ] 78 - c - - - ML 343 342 3 345 3 1 1 759 1579 -12.501 -0.010 -7.147 0.065 0.325 -0.100 -0.380 D 344 342 3 345 3 0 0 473 1293 -13.856 -9.369 -0.002 IL 345 345 3 345 3 1 1 756 1576 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 80 ] 79 - c - - - ML 346 345 3 348 3 1 1 759 1579 -0.077 -4.481 -7.098 0.098 0.224 -0.069 -0.307 D 347 345 3 348 3 0 0 332 1152 -13.866 -9.379 -0.002 IL 348 348 3 348 3 1 2 760 1580 -0.032 -5.494 -15.318 0.000 0.000 0.000 0.000 [ MATL 81 ] 175 - g - - - ML 349 348 3 351 3 1 1 53 72 -12.482 -0.001 -11.136 -0.709 -0.057 0.587 -0.113 D 350 348 3 351 3 0 0 49 68 -13.876 -6.876 -0.012 IL 351 351 3 351 3 1 1 58 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 82 ] 176 - g - - - ML 352 351 3 354 3 1 1 52 71 -12.492 -0.001 -11.146 -0.410 0.259 0.664 -1.101 D 353 351 3 354 3 0 0 48 67 -13.866 -5.290 -0.037 IL 354 354 3 354 3 1 1 57 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 83 ] 177 - u - - - ML 355 354 3 357 3 1 1 51 70 -12.525 -0.001 -11.179 -0.032 -0.782 0.145 0.416 D 356 354 3 357 3 0 0 47 65 -13.831 -9.344 -0.002 IL 357 357 3 357 3 1 1 56 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 84 ] 178 - u - - - ML 358 357 3 360 3 1 1 50 69 -12.525 -0.001 -11.179 -0.468 -0.064 -0.828 0.813 D 359 357 3 360 3 0 0 46 65 -13.831 -9.344 -0.002 IL 360 360 3 360 3 1 1 55 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 85 ] 179 - g - - - ML 361 360 3 363 3 1 1 49 68 -12.525 -0.001 -11.179 -0.229 0.089 0.395 -0.381 D 362 360 3 363 3 0 0 46 65 -13.831 -3.755 -0.111 IL 363 363 3 363 3 1 1 54 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 86 ] 180 - a - - - ML 364 363 3 366 3 1 1 48 67 -12.619 -0.001 -11.273 0.538 -0.725 0.253 -0.412 D 365 363 3 366 3 0 0 45 64 -13.722 -3.603 -0.124 IL 366 366 3 366 3 1 1 53 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 87 ] 181 - c - - - ML 367 366 3 369 3 1 1 47 66 -12.709 -0.001 -11.363 0.117 0.129 -0.152 -0.117 D 368 366 3 369 3 0 0 44 62 -13.601 -4.611 -0.060 IL 369 369 3 369 3 1 1 52 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 88 ] 182 - u - - - ML 370 369 3 372 3 1 1 46 65 -12.748 -0.001 -11.402 -0.136 -1.361 0.057 0.731 D 371 369 3 372 3 0 0 42 61 -13.543 -6.474 -0.016 IL 372 372 3 372 3 1 1 51 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 89 ] 183 - a - - - ML 373 372 3 375 3 1 1 45 63 -12.757 -0.001 -11.411 0.267 0.205 -0.920 0.157 D 374 372 3 375 3 0 0 42 60 -13.530 -4.544 -0.063 IL 375 375 3 375 3 1 1 50 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 90 ] 184 - u - - - ML 376 375 3 378 3 1 1 44 62 -12.794 -0.001 -11.448 -0.007 -0.203 0.000 0.184 D 377 375 3 378 3 0 0 41 60 -13.469 -2.936 -0.202 IL 378 378 3 378 3 1 1 49 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 91 ] 185 - c - - - ML 379 378 3 381 3 1 1 43 61 -12.901 -0.001 -11.555 -0.134 0.898 -0.637 -0.779 D 380 378 3 381 3 0 0 40 58 -13.271 -6.418 -0.017 IL 381 381 3 381 3 1 1 48 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 92 ] 186 - c - - - ML 382 381 3 384 3 1 1 42 60 -12.907 -0.001 -11.562 -0.171 0.446 -0.982 0.314 D 383 381 3 384 3 0 0 39 58 -13.257 -3.343 -0.150 IL 384 384 3 384 3 1 1 47 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 93 ] 187 - u - - - ML 385 384 3 387 3 1 1 41 59 -12.972 -0.001 -11.626 -0.373 0.072 0.103 0.141 D 386 384 3 387 3 0 0 38 56 -13.111 -3.648 -0.120 IL 387 387 3 387 3 1 1 46 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 94 ] 188 - g - - - ML 388 387 3 390 3 1 1 40 58 -13.017 -0.001 -11.671 0.164 -0.434 0.371 -0.242 D 389 387 3 390 3 0 0 36 55 -12.995 -8.508 -0.004 IL 390 390 3 390 3 1 1 45 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 95 ] 189 - u - - - ML 391 390 3 393 3 1 1 39 57 -13.017 -0.001 -11.671 -0.087 -0.231 -0.215 0.428 D 392 390 3 393 3 0 0 35 54 -12.995 -8.508 -0.004 IL 393 393 3 393 3 1 1 44 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 96 ] 190 - g - - - ML 394 393 3 396 3 1 1 38 56 -13.017 -0.001 -11.671 -0.196 -0.487 0.875 -0.787 D 395 393 3 396 3 0 0 34 53 -12.995 -8.508 -0.004 IL 396 396 3 396 3 1 1 43 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 97 ] 191 - g - - - ML 397 396 3 399 3 1 1 37 55 -13.017 -0.001 -11.671 -0.166 -0.419 0.626 -0.291 D 398 396 3 399 3 0 0 33 52 -12.995 -8.508 -0.004 IL 399 399 3 399 3 1 1 42 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 98 ] 192 - a - - - ML 400 399 3 402 3 1 1 36 54 -13.017 -0.001 -11.671 0.617 -0.450 0.318 -1.034 D 401 399 3 402 3 0 0 32 51 -12.995 -8.508 -0.004 IL 402 402 3 402 3 1 1 41 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 99 ] 193 - g - - - ML 403 402 3 405 3 1 1 35 53 -13.017 -0.001 -11.671 -0.192 -0.948 0.482 0.275 D 404 402 3 405 3 0 0 31 50 -12.995 -8.508 -0.004 IL 405 405 3 405 3 1 1 40 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 100 ] 194 - u - - - ML 406 405 3 408 3 1 1 34 52 -13.017 -0.001 -11.671 -0.445 -2.003 0.574 0.611 D 407 405 3 408 3 0 0 30 49 -12.995 -5.702 -0.028 IL 408 408 3 408 3 1 1 39 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 101 ] 195 - u - - - ML 409 408 3 411 3 1 1 32 51 -13.026 -0.001 -11.680 -0.353 -0.431 -0.077 0.611 D 410 408 3 411 3 0 0 29 48 -12.971 -5.198 -0.040 IL 411 411 3 411 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 102 ] 196 - a - - - ML 412 411 3 414 3 1 1 31 50 -13.039 -0.001 -11.693 0.315 -0.127 -0.620 0.250 D 413 411 3 414 3 0 0 28 47 -12.935 -8.448 -0.004 IL 414 414 3 414 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 103 ] 197 - a - - - ML 415 414 3 417 3 1 1 30 49 -13.039 -0.001 -11.693 0.444 -0.007 -0.022 -0.601 D 416 414 3 417 3 0 0 27 46 -12.935 -8.448 -0.004 IL 417 417 3 417 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 104 ] 198 - a - - - ML 418 417 3 420 3 1 1 29 48 -13.039 -0.001 -11.693 0.554 -0.502 0.105 -0.413 D 419 417 3 420 3 0 0 26 45 -12.935 -4.599 -0.061 IL 420 420 3 420 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 105 ] 199 - a - - - ML 421 420 3 423 3 1 1 28 47 -13.058 -0.001 -11.712 0.532 -0.151 0.218 -1.028 D 422 420 3 423 3 0 0 25 44 -12.879 -8.392 -0.004 IL 423 423 3 423 3 1 1 34 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 106 ] 200 - g - - - ML 424 423 3 426 3 1 1 27 46 -13.058 -0.001 -11.712 -0.416 -0.423 0.734 -0.249 D 425 423 3 426 3 0 0 24 43 -12.879 -8.392 -0.004 IL 426 426 3 426 3 1 1 33 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 107 ] 201 - c - - - ML 427 426 3 429 3 1 1 26 45 -13.058 -0.001 -11.712 -0.012 0.834 -0.740 -0.674 D 428 426 3 429 3 0 0 23 42 -12.879 -8.392 -0.004 IL 429 429 3 429 3 1 1 32 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 108 ] 202 - c - - - ML 430 429 3 432 3 1 1 25 43 -13.058 -0.001 -11.712 0.263 0.453 -0.561 -0.409 D 431 429 3 432 3 0 0 22 41 -12.879 -4.787 -0.053 IL 432 432 3 432 3 1 1 31 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 109 ] 203 - g - - - ML 433 432 3 435 3 1 1 24 42 -13.074 -0.001 -11.728 -0.430 0.447 0.539 -1.180 D 434 432 3 435 3 0 0 21 40 -12.830 -8.343 -0.005 IL 435 435 3 435 3 1 1 30 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 110 ] 204 - u - - - ML 436 435 3 438 3 1 1 23 41 -13.074 -0.001 -11.728 -0.062 0.013 -0.629 0.471 D 437 435 3 438 3 0 0 20 39 -12.830 -8.343 -0.005 IL 438 438 3 438 3 1 1 29 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 111 ] 205 - g - - - ML 439 438 3 441 3 1 1 22 40 -13.074 -0.001 -11.728 0.095 -0.381 0.184 0.040 D 440 438 3 441 3 0 0 20 38 -12.830 -8.343 -0.005 IL 441 441 3 441 3 1 1 28 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 112 ] 206 - g - - - ML 442 441 3 444 3 1 1 21 39 -13.074 -0.001 -11.728 -0.108 0.007 0.479 -0.570 D 443 441 3 444 3 0 0 19 38 -12.830 -1.100 -0.907 IL 444 444 3 444 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 113 ] 207 - a - - - ML 445 444 3 447 3 1 1 20 38 -13.271 -0.001 -11.925 0.861 -1.099 0.006 -0.488 D 446 444 3 447 3 0 0 18 36 -11.932 -7.445 -0.009 IL 447 447 3 447 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 114 ] 208 - u - - - ML 448 447 3 450 3 1 1 18 37 -13.271 -0.001 -11.925 -2.035 0.520 -0.574 0.723 D 449 447 3 450 3 0 0 17 35 -11.932 -7.445 -0.009 IL 450 450 3 450 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 115 ] 209 - C - - - ML 451 450 3 453 3 1 1 17 36 -13.271 -0.001 -11.925 -0.562 1.541 -1.786 -3.017 D 452 450 3 453 3 0 0 16 34 -11.932 -7.445 -0.009 IL 453 453 3 453 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 116 ] 210 - G - - - ML 454 453 3 456 3 1 1 16 35 -13.271 -0.001 -11.925 -0.456 -8.693 1.707 -8.064 D 455 453 3 456 3 0 0 15 33 -11.932 -7.445 -0.009 IL 456 456 3 456 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 117 ] 211 - G - - - ML 457 456 3 459 3 1 1 15 33 -13.271 -0.001 -11.925 -2.364 -6.522 1.658 -0.644 D 458 456 3 459 3 0 0 14 32 -11.932 -7.445 -0.009 IL 459 459 3 459 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 118 ] 212 - A - - - ML 460 459 3 462 3 1 1 14 32 -13.271 -0.001 -11.925 1.698 -0.871 -2.350 -6.264 D 461 459 3 462 3 0 0 13 31 -11.932 -7.445 -0.009 IL 462 462 3 462 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 119 ] 213 - G - - - ML 463 462 3 465 3 1 1 12 31 -13.271 -0.001 -11.925 -7.830 -9.603 1.997 -8.591 D 464 462 3 465 3 0 0 12 30 -11.932 -7.445 -0.009 IL 465 465 3 465 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 120 ] 214 - A - - - ML 466 465 3 468 3 1 1 11 29 -13.271 -0.001 -11.925 1.794 -8.065 -0.934 -7.952 D 467 465 3 468 3 0 0 11 29 -11.932 -7.445 -0.009 IL 468 468 3 468 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 121 ] 215 - g - - - ML 469 468 3 471 3 1 1 9 28 -13.271 -0.001 -11.925 -0.222 -3.189 0.709 0.484 D 470 468 3 471 3 0 0 9 28 -11.932 -0.019 -6.323 IL 471 471 3 471 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 122 ] 216 - A - - - ML 472 471 3 474 2 1 1 1 1 * 0.000 1.807 -1.165 -6.845 -4.454 D 473 471 3 474 2 0 0 0 0 * 0.000 IL 474 474 3 474 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 123 ] - - - - - - E 475 474 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Trp ACC arch-Trp-r2-033017 LENG 154 MAXL 820 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 12:11:46 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Trp-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Trp-r2-033017.sto NSEQ 170 EFFN 4.064789 CKSUM 524992266 STATS LOCAL MSV -10.3900 0.71798 STATS LOCAL VITERBI -11.5058 0.71798 STATS LOCAL FORWARD -2.7731 0.71798 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42316 1.41521 1.27848 1.43669 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 0.00000 * 1 3.02362 3.88392 0.09553 3.82059 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 2 2.63991 3.24174 0.15656 3.36807 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 3 1.78364 2.70257 0.36329 2.66558 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 4 1.67471 2.18460 0.52030 2.24645 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 5 1.99561 1.15013 1.41975 1.18515 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 6 2.30399 1.00642 1.75207 1.01832 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 7 1.70654 2.96799 0.34953 2.77932 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 8 3.26228 3.12097 3.79869 0.11073 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 9 1.42339 3.04637 0.44236 2.67288 9 G - - , 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 10 2.41022 3.28784 0.18699 3.13691 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 11 2.61542 0.62658 2.08619 1.31570 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 12 2.25113 0.95442 1.52286 1.23238 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 13 1.50565 1.36009 1.73544 1.06373 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 14 0.07549 3.91719 3.58179 3.68921 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 15 2.01177 3.40285 0.24244 3.03118 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 16 2.32375 0.55198 2.96943 1.29116 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.13982 4.32843 2.14303 1.46634 0.26236 1.09861 0.40547 17 2.60479 0.23178 3.37479 2.31528 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02988 4.21849 4.21849 1.46634 0.26236 2.38824 0.09628 18 0.92247 1.50307 2.22904 1.30054 18 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02988 4.21849 4.21849 1.46634 0.26236 0.20283 1.69509 19 3.36231 4.31501 0.07131 3.87262 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 20 3.36231 4.31501 0.07131 3.87262 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 21 1.65342 1.20225 2.32660 0.89047 21 u - - _ 1.38629 1.38629 1.38629 1.38629 0.17048 1.94106 4.32843 0.57981 0.82099 1.09861 0.40547 22 0.07549 3.91719 3.58179 3.68921 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 23 1.61029 1.91251 1.12918 1.11121 25 u - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 24 1.36824 1.62905 0.87454 2.02287 26 g - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 25 1.47070 2.21616 0.56593 2.37109 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 26 3.33563 0.38587 3.08883 1.43132 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 27 1.86948 1.99128 0.51232 2.20574 29 G - - , 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 28 1.32692 1.57057 1.11679 1.61218 30 g - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 29 2.20913 0.78786 1.75183 1.33967 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 30 2.21562 2.65651 0.36986 2.04106 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 31 2.44171 2.30183 0.28532 2.79463 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.11254 4.32843 2.37247 1.46634 0.26236 1.09861 0.40547 32 1.53459 2.71684 0.45038 2.51345 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.02909 4.24498 4.24498 1.46634 0.26236 2.20506 0.11681 33 3.47371 0.10927 4.03158 2.90479 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02909 4.24498 4.24498 1.46634 0.26236 2.20506 0.11681 34 3.11278 2.99432 3.64589 0.12857 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02909 4.24498 4.24498 1.46634 0.26236 2.20506 0.11681 35 1.26440 1.53050 1.55136 1.24062 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02909 4.24498 4.24498 1.46634 0.26236 2.20506 0.11681 36 1.26440 1.53050 1.55136 1.24062 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02909 4.24498 4.24498 1.46634 0.26236 0.24909 1.51191 37 1.30696 1.59382 1.37636 1.29567 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 38 1.74674 3.23186 0.31608 2.86170 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.12478 4.32843 2.26225 1.46634 0.26236 1.09861 0.40547 39 1.24219 1.06317 2.17125 1.37890 41 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 40 1.76193 1.77239 0.89164 1.39281 42 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 41 1.84137 2.79859 0.35800 2.50801 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 42 1.26539 1.49760 2.06534 1.00123 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 43 1.40965 1.25874 1.57021 1.33273 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 44 1.21033 1.88714 1.66825 1.01661 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 45 1.10196 1.65410 1.64090 1.26333 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 46 1.12606 1.62435 1.59045 1.29164 48 a - - _ 1.38629 1.38629 1.38629 1.38629 0.16110 4.23310 2.00777 1.46634 0.26236 2.29200 0.10654 47 1.39552 1.69484 1.23709 1.27855 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03352 4.10552 4.10552 1.46634 0.26236 2.89874 0.05667 48 1.55311 1.91852 0.79283 1.66587 50 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03352 4.10552 4.10552 1.46634 0.26236 2.89874 0.05667 49 1.15897 1.59007 1.48202 1.36610 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03352 4.10552 4.10552 1.46634 0.26236 2.89874 0.05667 50 1.46261 1.30933 1.80023 1.09929 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03352 4.10552 4.10552 1.46634 0.26236 2.89874 0.05667 51 1.44535 1.32758 1.56201 1.23959 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05058 4.10552 3.41607 1.46634 0.26236 2.89874 0.05667 52 1.17754 1.97245 1.26056 1.31173 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03409 4.08902 4.08902 1.46634 0.26236 2.95198 0.05365 53 1.17608 1.88043 1.09413 1.58885 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03409 4.08902 4.08902 1.46634 0.26236 2.30405 0.10520 54 1.07979 1.53381 1.66233 1.36678 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04284 4.10418 3.67192 1.46634 0.26236 2.45011 0.09024 55 1.11421 1.66256 1.65594 1.23354 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 56 1.07511 1.81049 1.25622 1.55856 58 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 57 1.44186 1.66430 0.98938 1.59760 59 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 58 1.31142 1.80313 1.05367 1.52729 60 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 59 1.36777 1.26555 1.54191 1.38922 61 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 60 1.31692 1.51077 1.48390 1.25684 62 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 61 1.44714 1.41737 1.69308 1.08337 63 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 62 1.57224 1.28658 1.68372 1.10708 64 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 2.90141 0.05651 63 1.72667 1.15533 2.01020 0.98562 65 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04008 4.10472 3.78146 1.46634 0.26236 2.90141 0.05651 64 1.20898 1.52071 1.49776 1.34973 66 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03376 4.09840 4.09840 1.46634 0.26236 2.92217 0.05532 65 1.08060 1.62830 1.38046 1.54701 67 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03376 4.09840 4.09840 1.46634 0.26236 2.92217 0.05532 66 1.11246 1.72416 1.53564 1.28154 68 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04873 4.09840 3.47506 1.46634 0.26236 2.92217 0.05532 67 1.13351 1.59042 1.49267 1.38834 69 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04182 4.08394 3.72477 1.46634 0.26236 2.96767 0.05279 68 1.04510 1.73389 1.64430 1.27799 70 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03838 4.07663 3.87821 1.46634 0.26236 2.98965 0.05161 69 1.24767 1.83285 1.21416 1.36293 71 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06496 4.07290 3.08201 1.46634 0.26236 3.00063 0.05104 70 1.28573 1.66031 1.62662 1.08803 72 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05137 4.04364 3.42529 1.46634 0.26236 3.08154 0.04697 71 1.32642 1.62239 1.59891 1.09354 73 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04248 4.02852 3.73867 1.46634 0.26236 3.12006 0.04516 72 1.26771 1.85403 1.49297 1.08703 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.12516 4.02252 2.30525 1.46634 0.26236 3.13480 0.04448 73 1.17092 1.93379 1.51216 1.12428 75 u - - _ 1.38629 1.38629 1.38629 1.38629 0.07915 3.93715 2.87184 1.46634 0.26236 2.99287 0.05144 74 1.12111 1.89331 1.67412 1.09053 76 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04103 3.90705 3.90705 1.46634 0.26236 3.36982 0.03500 75 1.31417 1.45788 1.64469 1.18580 77 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05074 3.90705 3.52748 1.46634 0.26236 3.36982 0.03500 76 1.24427 1.45586 1.59036 1.29172 78 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04533 3.89773 3.72841 1.46634 0.26236 3.38558 0.03444 77 1.23675 1.48633 1.57972 1.28215 79 a - - _ 1.38629 1.38629 1.38629 1.38629 0.86542 0.58898 3.72008 3.79870 0.02265 3.39180 0.03423 78 1.37427 1.57463 1.35901 1.26240 175 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04175 3.89010 3.89010 1.46634 0.26236 3.22427 0.04060 79 1.32360 1.51268 1.31343 1.40810 176 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04158 3.89398 3.89398 1.46634 0.26236 2.89336 0.05698 80 1.26955 1.70249 1.51346 1.14990 177 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04103 3.90705 3.90705 1.46634 0.26236 3.36982 0.03500 81 1.38464 1.51657 1.81133 1.00325 178 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04103 3.90705 3.90705 1.46634 0.26236 3.36982 0.03500 82 1.29825 1.53748 1.42248 1.30581 179 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04103 3.90705 3.90705 1.46634 0.26236 2.30503 0.10509 83 1.12026 1.73110 1.44867 1.34005 180 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94453 3.94453 1.46634 0.26236 2.21708 0.11533 84 1.23644 1.50106 1.60240 1.25428 181 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03802 3.98178 3.98178 1.46634 0.26236 2.59934 0.07723 85 1.30148 1.79192 1.54233 1.05743 182 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03740 3.99794 3.99794 1.46634 0.26236 3.00878 0.05061 86 1.21289 1.45399 1.80097 1.19109 183 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03726 4.00163 4.00163 1.46634 0.26236 2.55726 0.08069 87 1.26537 1.58527 1.55563 1.19760 184 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.85912 0.16938 88 1.31163 1.19890 1.76243 1.35687 185 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03498 4.06360 4.06360 1.46634 0.26236 2.87248 0.05822 89 1.32810 1.35384 1.84150 1.14510 186 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03488 4.06648 4.06648 1.46634 0.26236 2.02805 0.14109 90 1.34399 1.50613 1.52495 1.20465 187 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03388 4.09510 4.09510 1.46634 0.26236 2.13134 0.12633 91 1.22265 1.66830 1.39759 1.31011 188 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03318 4.11536 4.11536 1.46634 0.26236 2.86513 0.05866 92 1.29119 1.57931 1.62656 1.13216 189 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03318 4.11536 4.11536 1.46634 0.26236 2.86513 0.05866 93 1.31399 1.72155 1.15365 1.43977 190 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03318 4.11536 4.11536 1.46634 0.26236 2.86513 0.05866 94 1.30185 1.67510 1.28757 1.32900 191 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03318 4.11536 4.11536 1.46634 0.26236 2.86513 0.05866 95 1.08512 1.69883 1.40329 1.45476 192 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03318 4.11536 4.11536 1.46634 0.26236 2.86513 0.05866 96 1.30809 1.76550 1.35917 1.19836 193 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03318 4.11536 4.11536 1.46634 0.26236 2.86513 0.05866 97 1.36558 1.91471 1.31878 1.10890 194 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03318 4.11536 4.11536 1.46634 0.26236 2.64865 0.07337 98 1.34835 1.62771 1.58964 1.07894 195 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03305 4.11929 4.11929 1.46634 0.26236 2.54891 0.08139 99 1.19294 1.55108 1.73073 1.17929 196 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03286 4.12502 4.12502 1.46634 0.26236 2.83065 0.06078 100 1.14337 1.55306 1.54251 1.36330 197 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03286 4.12502 4.12502 1.46634 0.26236 2.83065 0.06078 101 1.11064 1.68589 1.49295 1.34452 198 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03286 4.12502 4.12502 1.46634 0.26236 2.39840 0.09526 102 1.11191 1.61342 1.44607 1.44236 199 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03257 4.13372 4.13372 1.46634 0.26236 2.79825 0.06285 103 1.35586 1.67987 1.23533 1.32751 200 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03257 4.13372 4.13372 1.46634 0.26236 2.79825 0.06285 104 1.28619 1.21185 1.78862 1.35154 201 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03257 4.13372 4.13372 1.46634 0.26236 2.79825 0.06285 105 1.20400 1.37623 1.72166 1.31412 202 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03257 4.13372 4.13372 1.46634 0.26236 2.42641 0.09250 106 1.35721 1.41633 1.32410 1.45253 203 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03233 4.14091 4.14091 1.46634 0.26236 2.77043 0.06468 107 1.29493 1.49907 1.74859 1.11253 204 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03233 4.14091 4.14091 1.46634 0.26236 2.77043 0.06468 108 1.24153 1.64043 1.47626 1.24246 205 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03233 4.14091 4.14091 1.46634 0.26236 2.77043 0.06468 109 1.28824 1.55745 1.35109 1.36801 206 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03233 4.14091 4.14091 1.46634 0.26236 0.81446 0.58497 110 0.99311 1.82851 1.51703 1.38805 207 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 111 1.63962 1.28974 1.80306 1.00564 208 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 112 1.54553 0.71781 2.19698 1.67215 209 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 113 1.62803 3.06306 0.37308 2.68346 210 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 114 1.91726 2.63559 0.48106 1.81287 211 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 115 0.44870 2.00463 2.23321 2.12321 212 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 116 3.19778 4.13438 0.08510 3.70048 213 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 117 0.30505 2.93808 1.97828 2.63612 214 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 2.29200 0.10654 118 1.32922 2.05837 1.21979 1.16359 215 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23310 4.23310 1.46634 0.26236 0.22581 1.59885 119 0.30858 2.20461 2.74242 2.39906 216 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 120 2.65952 0.54520 2.31968 1.37837 217 C - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 121 3.04152 0.32070 2.19613 2.15969 218 C - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 122 2.17698 0.41548 2.47954 1.94622 219 C - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 123 1.63482 1.97066 0.66043 1.90369 220 G - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 124 1.79471 1.34715 1.42187 1.10087 221 u - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 125 1.41919 1.14134 1.73450 1.33860 222 c - - , 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 126 2.06124 2.27299 0.39574 2.33806 223 G - - , 1.38629 1.38629 1.38629 1.38629 0.11254 2.37247 4.32843 2.50311 0.08537 1.09861 0.40547 127 0.60172 2.38791 1.70638 1.72154 237 A - - , 1.38629 1.38629 1.38629 1.38629 0.22590 4.32843 1.66595 1.46634 0.26236 1.09861 0.40547 128 2.33261 2.34526 2.78018 0.29423 238 U - - , 1.38629 1.38629 1.38629 1.38629 0.03253 4.13506 4.13506 1.46634 0.26236 0.13063 2.09997 129 2.81326 0.29434 3.42893 1.81681 239 C - - , 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 130 1.77447 1.65703 0.65189 2.13146 240 G - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 131 1.90234 1.43747 1.14339 1.22242 241 g - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 132 2.61188 3.03060 0.17582 3.23022 242 G - - < 1.38629 1.38629 1.38629 1.38629 0.11254 2.37247 4.32843 0.26222 1.46681 1.09861 0.40547 133 1.48209 2.76520 0.44248 2.69660 244 G - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 134 3.02737 3.88944 0.09503 3.82804 245 G - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 135 3.26228 3.12097 3.79869 0.11073 246 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 136 3.12818 2.93487 3.65663 0.13097 247 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 137 3.64899 0.09238 4.19230 3.05531 248 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 138 0.51513 2.85055 1.33710 2.49909 249 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 139 0.07549 3.91719 3.58179 3.68921 250 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 140 0.28630 2.69019 2.35827 2.44749 251 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 141 3.26228 3.12097 3.79869 0.11073 252 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 142 3.97532 0.11499 3.73959 2.71674 253 C - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 143 2.93643 0.49986 2.58882 1.32720 254 C - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 144 3.43651 0.21261 2.89761 2.26143 255 C - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 145 1.41255 1.58691 1.27935 1.29571 256 g - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 146 2.36688 0.73996 1.55031 1.52825 257 c - - > 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 147 3.00528 0.40254 2.78181 1.51444 258 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 148 1.24372 1.87982 0.83566 2.07559 259 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 149 1.39285 1.52884 0.99680 1.79703 260 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 150 2.54517 0.58868 1.99938 1.46507 261 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 151 2.91273 0.41967 2.53230 1.56574 262 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 152 3.56743 0.18285 3.10321 2.36475 263 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02673 4.32843 4.32843 1.46634 0.26236 1.09861 0.40547 153 3.96062 0.11571 3.73210 2.71396 264 C - - ) 1.38629 1.38629 1.38629 1.38629 0.14105 2.13398 4.32843 1.12924 0.39050 1.09861 0.40547 154 0.11421 3.53149 3.33542 3.14505 268 A - - : 1.38629 1.38629 1.38629 1.38629 0.01345 4.31516 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Tyr ACC arch-Tyr-r2-033017 STATES 308 NODES 87 CLEN 98 W 416 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 13:02:08 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Tyr-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Tyr-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Tyr-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Tyr-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Tyr-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Tyr-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Tyr-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 178 EFFN 178.000000 CKSUM 2793663305 NULL 0.000 0.000 0.000 0.000 EFP7GF -6.7572 0.71854 ECMLC 0.65726 -7.79841 1.85146 1600000 681864 0.001760 ECMGC 0.33832 -50.09834 -35.92391 1600000 48389 0.008266 ECMLI 0.57267 -9.08356 1.90668 1600000 649433 0.001848 ECMGI 0.33702 -46.52635 -32.52530 1600000 44806 0.008927 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 416 797 -12.417 -13.662 -0.002 -10.116 IL 1 1 2 1 4 16 42 418 798 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 43 418 799 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 152 - A - - MR 3 2 3 5 5 23 50 417 797 -1.397 -0.690 -12.284 -12.497 -13.388 1.998 -9.561 -8.797 -8.908 D 4 2 3 5 5 13 38 413 793 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 22 50 418 798 -0.593 -1.573 -12.982 -11.149 -12.255 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 148 C G - - MP 6 5 3 10 6 23 50 415 795 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -12.492 -12.736 -8.345 -11.074 -6.582 -7.836 3.997 -12.860 -13.612 -10.417 -7.861 -12.346 -8.675 -13.163 -9.744 -12.274 ML 7 5 3 10 6 15 40 412 792 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 40 412 792 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 36 406 787 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 41 414 794 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 41 414 794 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 147 C G - - MP 12 11 6 16 6 23 48 413 793 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.446 -10.723 -9.766 -6.958 -8.118 -9.912 3.854 -9.032 -9.869 -0.209 -9.990 -9.118 -0.901 -10.282 -3.144 -8.670 ML 13 11 6 16 6 14 40 410 791 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 39 410 790 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 36 405 785 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 41 412 792 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 41 412 792 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 146 C G - - MP 18 17 6 22 6 21 47 411 791 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.374 -10.375 -9.761 -6.632 -8.192 -9.982 3.709 -9.062 -9.826 1.511 -9.984 -8.395 -4.914 -10.313 -5.893 -8.646 ML 19 17 6 22 6 14 39 408 789 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 39 408 788 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 36 403 784 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 40 410 790 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 40 410 790 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 145 G C - - MP 24 23 6 28 6 19 45 409 789 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.168 -8.651 -9.960 -1.019 -8.914 -9.640 1.556 -9.553 -9.465 3.586 -9.697 -6.426 -5.425 -9.800 -0.983 -8.827 ML 25 23 6 28 6 14 39 407 787 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 39 406 787 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 36 402 782 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 40 408 788 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 40 408 788 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 144 C G - - MP 30 29 6 34 6 17 43 407 787 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -7.938 -7.640 -7.919 -0.051 -6.769 -8.735 3.572 -7.430 -7.784 0.881 -8.284 -2.830 -0.572 -8.115 -1.215 -6.507 ML 31 29 6 34 6 14 38 405 785 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 38 405 785 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 36 401 781 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 39 406 786 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 39 406 786 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 143 C G - - MP 36 35 6 40 6 16 41 405 785 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.442 -10.716 -9.764 -6.948 -8.117 -9.911 3.546 -9.031 -9.866 1.747 -9.988 -9.103 -2.340 -10.280 -0.423 -8.668 ML 37 35 6 40 6 13 38 403 784 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 38 403 783 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 36 401 781 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 39 404 784 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 39 404 784 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 142 G C - - MP 42 41 6 46 4 14 39 403 783 -12.621 -12.828 -0.001 -11.242 -9.989 -9.199 -9.646 -1.750 -8.488 -10.041 -0.322 -9.149 -9.547 3.010 -9.828 -6.825 2.767 -10.109 -6.153 -8.469 ML 43 41 6 46 4 12 37 402 782 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 37 401 781 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 35 400 780 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 38 403 783 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 37 402 783 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 12 37 401 781 -13.532 -0.000 -12.186 -8.989 -4.972 -9.871 1.987 D 49 47 6 50 3 10 35 399 780 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 37 402 782 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 3 53 2 11 36 400 780 -14.183 -0.000 1.998 -9.561 -8.797 -8.908 D 52 50 3 53 2 10 35 399 779 -8.445 -0.004 IL 53 53 3 53 2 11 36 400 781 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 10 35 399 779 [ BEGR 68 ] - - - - - - S 55 54 1 56 3 0 2 39 64 -13.532 -0.000 -12.186 IL 56 56 2 56 3 1 1 42 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 118 - a - - - ML 57 56 2 59 3 1 3 39 64 -13.532 -0.000 -12.186 0.904 -2.389 -1.834 0.728 D 58 56 2 59 3 0 0 38 62 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 41 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 119 - G - - - ML 60 59 3 62 3 1 2 38 63 -13.532 -0.000 -12.186 -3.320 -6.514 1.172 0.709 D 61 59 3 62 3 0 0 37 62 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 40 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 120 - G - - - ML 63 62 3 65 3 1 1 37 62 -13.532 -0.046 -4.988 -3.001 -9.795 1.953 -8.799 D 64 62 3 65 3 0 0 36 61 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 39 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 121 - U - - - ML 66 65 3 68 3 1 1 36 61 -13.486 -0.000 -12.140 -7.952 -1.149 -8.731 1.825 D 67 65 3 68 3 0 0 35 60 -10.054 -0.069 -4.446 IL 68 68 3 68 3 1 1 38 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 122 - C - - - ML 69 68 3 71 5 1 1 35 60 -12.469 -0.001 -12.284 -12.497 -13.388 -8.564 1.886 -9.004 -1.743 D 70 68 3 71 5 0 0 34 59 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 35 60 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 74 ] 123 141 C G - - MP 72 71 3 76 6 2 2 34 59 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.434 -10.663 -9.764 -6.901 -8.128 -9.921 3.449 -9.036 -9.861 2.174 -9.988 -8.979 -0.945 -10.285 -5.830 -8.666 ML 73 71 3 76 6 1 1 33 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 30 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 33 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 75 ] 124 140 C G - - MP 78 77 6 82 6 2 2 32 57 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -9.471 -8.156 -9.634 -1.223 -11.072 -12.406 3.466 -9.630 -9.217 1.990 -9.863 -0.932 -6.854 -10.865 -8.510 -8.247 ML 79 77 6 82 6 1 1 31 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 28 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 32 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 31 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 76 ] 125 139 c g - - MP 84 83 6 88 6 2 2 30 55 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.191 -9.948 -9.674 0.023 -8.219 -9.986 2.841 -9.035 -9.707 2.433 -9.912 -7.761 -4.871 -10.209 1.241 -8.531 ML 85 83 6 88 6 1 1 29 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 29 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 26 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 30 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 30 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 77 ] 126 138 G C - - MP 90 89 6 94 6 2 2 28 53 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -9.235 -7.419 -9.285 -2.492 -10.341 -9.096 0.486 -9.752 -8.841 3.598 -9.136 0.982 -1.711 -8.830 -7.449 -8.174 ML 91 89 6 94 6 1 1 27 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 27 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 25 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 28 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 28 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 78 ] 127 137 G C - - MP 96 95 6 100 4 2 2 26 51 -12.621 -12.828 -0.001 -11.242 -11.243 -7.998 -13.101 -1.349 -12.937 -9.201 -7.293 -12.740 -9.357 3.960 -9.565 -5.906 -7.641 -9.653 -9.717 -11.996 ML 97 95 6 100 4 1 1 26 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 26 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 24 49 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 27 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 27 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 79 ] 128 - U - - - ML 102 101 6 104 3 1 1 24 49 -13.532 -0.000 -12.186 -8.450 -3.529 -9.265 1.967 D 103 101 6 104 3 0 0 22 47 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 26 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 80 ] 129 - U - - - ML 105 104 3 107 3 1 1 23 48 -13.532 -0.000 -12.186 -8.747 -4.360 -9.596 1.981 D 106 104 3 107 3 0 0 21 46 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 25 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 81 ] 130 - C - - - ML 108 107 3 110 3 1 1 22 47 -13.532 -0.000 -12.186 -9.427 1.998 -10.002 -8.239 D 109 107 3 110 3 0 0 20 45 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 24 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 82 ] 131 - A - - - ML 111 110 3 113 3 1 1 21 46 -13.532 -0.000 -12.186 1.202 -8.421 0.759 -8.327 D 112 110 3 113 3 0 0 19 44 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 23 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 83 ] 132 - A - - - ML 114 113 3 116 3 1 1 20 45 -13.532 -0.000 -12.186 1.998 -9.561 -8.797 -8.908 D 115 113 3 116 3 0 0 19 43 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 22 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 84 ] 133 - A - - - ML 117 116 3 119 3 1 1 19 44 -5.435 -0.034 -12.186 1.426 -4.022 -0.072 -1.735 D 118 116 3 119 3 0 0 18 43 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 23 48 -1.064 -0.965 -6.744 0.000 0.000 0.000 0.000 [ MATL 85 ] 136 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -7.599 -7.333 -4.676 1.982 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 86 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 16 377 757 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 1 16 377 757 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 2 28 46 -0.007 -11.548 -7.941 -11.595 [ MATP 15 ] 10 29 G C - - MP 127 126 1 131 6 2 4 28 46 -13.430 -13.369 -0.001 -12.146 -12.426 -12.821 -10.769 -8.007 -11.745 1.444 -12.674 -9.417 -7.275 -11.642 -9.326 3.727 -9.601 -5.807 -7.547 -9.784 -9.586 -10.436 ML 128 126 1 131 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 27 45 -7.849 -6.578 -0.671 -6.556 -1.690 -4.770 -0.479 0.974 -1.221 -0.170 D 130 126 1 131 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 28 C G - - MP 133 132 6 137 6 2 4 26 44 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.451 -10.732 -9.768 -6.969 -8.118 -9.912 3.920 -9.034 -9.872 -6.941 -9.992 -9.136 -0.407 -10.285 -3.681 -8.674 ML 134 132 6 137 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 27 U A - - MP 139 138 6 143 6 2 3 24 42 -13.435 -13.374 -0.046 -5.031 -12.431 -12.826 -10.434 -10.650 -9.766 -0.973 -8.133 -9.926 0.253 -9.039 -9.862 -6.884 -9.990 -8.946 3.834 -10.290 -5.836 -8.667 ML 140 138 6 143 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 26 C G - - MP 145 144 6 149 4 2 2 22 40 -12.575 -12.782 -0.001 -11.196 -10.400 -10.663 -9.722 -6.901 -8.077 -9.870 3.883 -8.990 -9.823 -6.879 -9.945 -9.036 -4.809 -2.199 -5.779 -0.083 ML 146 144 6 149 4 1 1 24 42 -6.574 -6.756 -0.062 -5.486 1.929 -4.255 -3.734 -3.966 MR 147 144 6 149 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 1 20 37 -13.532 -0.000 -12.186 1.998 -9.561 -8.797 -8.908 D 152 150 6 153 3 0 0 21 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 1 19 36 -13.532 -0.000 -12.186 -2.547 -9.757 1.936 -8.776 D 155 153 3 156 3 0 0 20 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 18 35 -13.532 -0.734 -1.327 -0.772 1.216 -6.722 0.113 D 158 156 3 159 3 0 0 19 38 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 160 159 3 162 3 1 1 17 34 -12.799 -0.158 -3.270 -5.934 1.716 -4.361 -0.622 D 161 159 3 162 3 0 0 15 32 -13.631 -9.144 -0.003 IL 162 162 3 162 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 163 162 3 165 3 1 1 16 33 -12.642 -0.001 -11.296 -6.706 -1.455 -7.460 1.856 D 164 162 3 165 3 0 0 15 32 -13.839 -0.005 -8.231 IL 165 165 3 165 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 166 165 3 168 3 1 1 15 31 -13.532 -0.000 -12.186 -8.083 -9.856 1.997 -8.843 D 167 165 3 168 3 0 0 16 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - - - ML 169 168 3 171 3 1 1 14 29 -13.532 -0.000 -12.186 -8.083 -9.856 1.997 -8.843 D 170 168 3 171 3 0 0 15 34 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - U - - - ML 172 171 3 174 3 1 1 13 25 -1.735 -0.516 -12.186 -1.336 -0.209 -2.250 1.338 D 173 171 3 174 3 0 0 10 22 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 13 25 -2.113 -0.382 -9.597 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.885 -8.571 -1.733 -8.354 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 1 361 741 -13.532 -0.000 -12.186 IL 180 180 2 180 3 1 1 362 742 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 181 180 2 183 5 1 2 361 741 -12.469 -0.001 -12.284 -12.497 -13.388 -1.055 -6.717 1.691 -1.833 D 182 180 2 183 5 0 0 358 738 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 360 740 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 117 c g - - MP 184 183 3 188 6 2 3 360 740 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -7.781 -7.422 -7.770 -1.361 -6.683 -8.596 2.911 -7.322 -7.650 2.438 -8.152 -0.968 0.529 -7.939 -0.607 -6.364 ML 185 183 3 188 6 1 1 357 737 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 356 737 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 351 732 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 358 739 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 358 738 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 116 C G - - MP 190 189 6 194 6 2 3 358 738 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.400 -10.629 -9.743 -6.843 -8.110 -9.906 3.360 -9.017 -9.837 1.755 -9.969 -8.931 1.210 -10.254 -5.808 -8.638 ML 191 189 6 194 6 1 1 355 735 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 354 735 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 350 730 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 356 737 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 356 737 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 115 C G - - MP 196 195 6 200 6 2 3 356 736 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -10.432 -10.664 -9.763 -6.901 -8.126 -9.920 3.440 -9.035 -9.860 2.151 -9.987 -8.984 -0.596 -10.283 -5.828 -8.664 ML 197 195 6 200 6 1 1 353 733 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 353 733 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 349 729 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 354 735 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 354 735 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 114 G C - - MP 202 201 6 206 6 2 3 354 734 -13.435 -13.374 -0.001 -12.151 -12.431 -12.826 -11.368 -7.995 -13.684 -5.470 -12.988 -9.158 -7.292 -13.140 -9.363 3.994 -9.556 -5.927 -7.658 -9.625 -9.740 -12.772 ML 203 201 6 206 6 1 1 352 732 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 351 731 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 348 728 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 353 733 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 352 733 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 35 113 G C - - MP 208 207 6 212 4 2 2 352 732 -12.621 -12.828 -0.001 -11.242 -8.584 -7.169 -8.503 2.523 -9.507 -9.177 -1.782 -8.950 -8.580 3.227 -8.937 -4.732 -0.939 -8.511 -6.708 -7.379 ML 209 207 6 212 4 1 1 350 730 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 349 729 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 347 727 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 351 731 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 351 731 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - - - ML 214 213 6 216 3 1 2 350 730 -13.532 -0.000 -12.186 -9.427 1.998 -10.002 -8.239 D 215 213 6 216 3 0 0 346 726 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 350 730 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 217 216 3 219 3 1 1 349 729 -13.532 -0.000 -12.186 -10.506 -9.299 -11.867 1.999 D 218 216 3 219 3 0 0 344 724 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 349 729 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - u - - - ML 220 219 3 222 3 1 1 348 728 -13.532 -0.000 -12.186 0.016 -0.016 -0.018 0.018 D 221 219 3 222 3 0 0 342 723 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 348 728 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - u - - - ML 223 222 3 225 3 1 1 347 727 -13.532 -0.000 -12.186 0.016 -0.016 -0.018 0.018 D 224 222 3 225 3 0 0 340 720 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 346 727 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - u - - - ML 226 225 3 228 3 1 1 346 726 -13.532 -0.000 -12.186 0.016 -0.016 -0.018 0.018 D 227 225 3 228 3 0 0 337 717 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 345 725 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 229 228 3 231 3 1 1 345 725 -13.532 -0.711 -1.362 -8.083 -9.856 1.997 -8.843 D 230 228 3 231 3 0 0 331 712 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 353 733 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - U - - - ML 232 231 3 234 3 1 1 353 733 -12.821 -0.001 -11.475 -0.245 -2.580 -0.131 1.054 D 233 231 3 234 3 0 0 283 663 -13.597 -9.110 -0.003 IL 234 234 3 234 3 1 1 352 732 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - g - - - ML 235 234 3 237 3 1 1 352 732 -12.821 -0.013 -6.835 -0.638 -1.322 0.761 0.336 D 236 234 3 237 3 0 0 282 662 -13.597 -9.110 -0.003 IL 237 237 3 237 3 1 1 351 731 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - c - - - ML 238 237 3 240 3 1 1 351 732 -12.809 -0.001 -11.463 -0.651 0.276 0.181 0.027 D 239 237 3 240 3 0 0 281 661 -13.616 -9.129 -0.003 IL 240 240 3 240 3 1 1 350 730 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 241 240 3 243 3 1 1 350 731 -12.809 -0.001 -11.463 -1.806 -0.542 1.188 -0.417 D 242 240 3 243 3 0 0 280 660 -13.616 -9.129 -0.003 IL 243 243 3 243 3 1 1 349 729 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - g - - - ML 244 243 3 246 3 1 1 349 730 -12.809 -0.018 -6.375 -0.770 -0.114 0.531 0.063 D 245 243 3 246 3 0 0 279 659 -13.616 -9.129 -0.003 IL 246 246 3 246 3 1 1 348 729 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - u - - - ML 247 246 3 249 3 1 1 349 729 -12.792 -0.160 -3.255 -0.389 -0.093 -0.513 0.676 D 248 246 3 249 3 0 0 277 658 -13.641 -9.154 -0.003 IL 249 249 3 249 3 1 1 350 730 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - c - - - ML 250 249 3 252 3 1 1 350 730 -12.633 -0.014 -6.732 -1.241 0.773 -0.609 0.278 D 251 249 3 252 3 0 0 276 656 -13.849 -9.362 -0.002 IL 252 252 3 252 3 1 1 349 729 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 253 252 3 255 3 1 1 349 729 -12.620 -0.001 -11.274 -1.945 1.297 -1.330 -0.176 D 254 252 3 255 3 0 0 275 655 -13.864 -9.377 -0.002 IL 255 255 3 255 3 1 1 348 728 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - a - - - ML 256 255 3 258 3 1 1 348 728 -12.620 -0.047 -4.974 0.420 -0.227 0.025 -0.340 D 257 255 3 258 3 0 0 274 654 -13.864 -9.377 -0.002 IL 258 258 3 258 3 1 1 347 728 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - g - - - ML 259 258 3 261 3 1 1 348 728 -12.574 -0.001 -11.228 -1.921 0.155 0.531 0.236 D 260 258 3 261 3 0 0 273 653 -13.914 -9.427 -0.002 IL 261 261 3 261 3 1 1 346 727 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 262 261 3 264 3 1 1 347 727 -12.574 -0.043 -5.100 -2.450 -0.143 1.133 -0.479 D 263 261 3 264 3 0 0 272 652 -13.914 -5.236 -0.039 IL 264 264 3 264 3 1 1 346 726 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - C - - - ML 265 264 3 267 3 1 1 346 727 -0.054 -4.774 -11.221 -0.764 1.076 -0.219 -1.171 D 266 264 3 267 3 0 0 147 527 -13.922 -6.668 -0.014 IL 267 267 3 267 3 1 1 346 726 -0.070 -4.404 -14.324 0.000 0.000 0.000 0.000 [ MATL 54 ] 100 - g - - - ML 268 267 3 270 3 1 1 23 42 -12.578 -0.001 -11.232 0.095 -0.455 0.404 -0.185 D 269 267 3 270 3 0 0 20 38 -13.910 -4.905 -0.049 IL 270 270 3 270 3 1 1 29 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 101 - c - - - ML 271 270 3 273 3 1 1 22 41 -12.621 -0.001 -11.275 0.029 0.303 -0.018 -0.399 D 272 270 3 273 3 0 0 19 37 -13.863 -9.376 -0.002 IL 273 273 3 273 3 1 1 28 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 102 - C - - - ML 274 273 3 276 3 1 1 21 39 -12.621 -0.001 -11.275 -0.443 1.068 -0.148 -1.916 D 275 273 3 276 3 0 0 18 36 -13.863 -4.782 -0.054 IL 276 276 3 276 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 103 - c - - - ML 277 276 3 279 3 1 1 20 38 -12.665 -0.001 -11.319 -1.275 0.384 -0.016 0.370 D 278 276 3 279 3 0 0 17 35 -13.812 -4.412 -0.070 IL 279 279 3 279 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 104 - G - - - ML 280 279 3 282 3 1 1 19 37 -12.718 -0.001 -11.372 -0.550 0.039 1.091 -2.644 D 281 279 3 282 3 0 0 16 35 -13.745 -3.336 -0.151 IL 282 282 3 282 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 105 - C - - - ML 283 282 3 285 3 1 1 18 36 -12.821 -0.001 -11.475 -2.122 1.312 -0.441 -0.861 D 284 282 3 285 3 0 0 15 33 -13.597 -9.110 -0.003 IL 285 285 3 285 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 106 - G - - - ML 286 285 3 288 3 1 1 16 35 -12.821 -0.001 -11.475 -0.649 -0.714 1.447 -5.314 D 287 285 3 288 3 0 0 14 32 -13.597 -9.110 -0.003 IL 288 288 3 288 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 107 - C - - - ML 289 288 3 291 3 1 1 15 34 -12.821 -0.001 -11.475 -7.696 1.911 -8.112 -2.118 D 290 288 3 291 3 0 0 13 31 -13.597 -9.110 -0.003 IL 291 291 3 291 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 108 - A - - - ML 292 291 3 294 3 1 1 14 32 -12.821 -0.001 -11.475 1.458 -2.076 -0.454 -1.808 D 293 291 3 294 3 0 0 12 30 -13.597 -9.110 -0.003 IL 294 294 3 294 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 109 - G - - - ML 295 294 3 297 3 1 1 13 31 -12.821 -0.001 -11.475 -7.398 -9.171 1.996 -8.160 D 296 294 3 297 3 0 0 11 29 -13.597 -9.110 -0.003 IL 297 297 3 297 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 110 - A - - - ML 298 297 3 300 3 1 1 11 30 -12.821 -0.001 -11.475 1.057 -1.537 -0.467 -0.233 D 299 297 3 300 3 0 0 9 28 -13.597 -9.110 -0.003 IL 300 300 3 300 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 111 - c - - - ML 301 300 3 303 3 1 1 10 28 -12.821 -0.001 -11.475 0.107 0.617 -1.586 0.079 D 302 300 3 303 3 0 0 8 27 -13.597 -0.006 -7.988 IL 303 303 3 303 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 112 - A - - - ML 304 303 3 306 2 1 1 1 1 * 0.000 1.998 -9.561 -8.797 -8.908 D 305 303 3 306 2 0 0 0 0 * 0.000 IL 306 306 3 306 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 67 ] - - - - - - E 307 306 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Tyr ACC arch-Tyr-r2-033017 LENG 98 MAXL 412 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 13:02:08 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Tyr-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Tyr-r2-033017.sto NSEQ 178 EFFN 4.310394 CKSUM 2793663305 STATS LOCAL MSV -8.8328 0.71854 STATS LOCAL VITERBI -10.1436 0.71854 STATS LOCAL FORWARD -3.1348 0.71854 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55769 1.32032 1.20194 1.50635 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 0.00000 * 1 3.95865 0.10964 3.84100 2.76013 1 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 2 3.01128 0.35035 2.39562 1.86294 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 3 2.71190 0.51338 1.68531 1.89888 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 4 1.96024 1.77491 0.57328 2.07147 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 5 2.10356 0.75833 1.70610 1.47860 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 6 2.53023 0.66172 1.59305 1.60399 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 7 2.08113 1.77959 0.89317 1.21354 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 8 3.17983 2.96553 3.70818 0.12516 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 9 0.06980 3.99267 3.65190 3.77104 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.03010 4.30203 4.12802 1.46634 0.26236 1.09861 0.40547 10 1.86364 3.28164 0.26871 3.14737 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02753 4.29945 4.29945 1.46634 0.26236 0.98603 0.46690 11 3.54945 0.21219 3.36649 2.05623 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 12 2.64728 1.58366 2.69305 0.42120 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 13 2.74047 0.35113 2.57661 1.86087 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 14 0.06980 3.99267 3.65190 3.77104 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 15 2.67832 3.90234 0.12642 3.51059 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 16 1.63717 0.84223 2.57147 1.20966 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.37057 4.30203 1.21700 1.46634 0.26236 1.09861 0.40547 17 2.12414 0.54651 2.65572 1.46426 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.10451 3.96994 2.52126 1.46634 0.26236 3.17255 0.04280 18 2.21260 1.94725 2.72567 0.38212 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04105 3.90649 3.90649 1.46634 0.26236 0.07659 2.60734 19 3.43192 4.39120 0.06622 3.94422 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 20 3.43192 4.39120 0.06622 3.94422 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 21 1.70653 1.54497 2.24459 0.69472 21 u - - _ 1.38629 1.38629 1.38629 1.38629 0.27472 1.48423 4.30203 0.34141 1.24053 1.09861 0.40547 22 0.19693 3.27495 2.37933 3.02982 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05054 4.30203 3.33152 1.46634 0.26236 1.09861 0.40547 23 2.27221 2.69233 0.30735 2.36657 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.02809 4.27958 4.27958 1.46634 0.26236 0.56405 0.84142 24 0.47281 2.86568 1.45271 2.45494 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 25 2.29112 3.50804 0.18443 3.28831 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 26 3.33796 0.30974 3.08345 1.68711 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 27 1.79658 2.85104 0.40671 2.20263 30 G - - , 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 28 2.08037 1.07900 1.20615 1.44463 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 29 2.44023 0.77466 1.57091 1.41000 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 30 2.49686 0.72489 1.40119 1.67677 33 c - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 31 3.08933 3.97484 0.08790 3.92057 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 32 1.34923 2.45152 0.59276 2.28676 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 33 3.73339 0.08520 4.26808 3.12926 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 34 3.33613 3.18395 3.87402 0.10289 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 35 1.26846 1.52421 1.54452 1.24643 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 36 1.26846 1.52421 1.54452 1.24643 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 37 1.26846 1.52421 1.54452 1.24643 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 38 3.43192 4.39120 0.06622 3.94422 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.36097 4.30203 1.23974 1.46634 0.26236 1.09861 0.40547 39 1.34335 1.91958 1.61225 0.93414 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 3.15173 0.04372 40 1.38884 1.83183 1.24550 1.19495 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04336 3.97918 3.74079 1.46634 0.26236 3.15173 0.04372 41 1.38739 1.44905 1.50710 1.22442 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03832 3.97413 3.97413 1.46634 0.26236 3.16318 0.04321 42 1.53603 1.73995 1.02355 1.38661 45 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03832 3.97413 3.97413 1.46634 0.26236 3.16318 0.04321 43 1.40154 1.57768 1.36256 1.23332 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04559 3.97413 3.65834 1.46634 0.26236 3.16318 0.04321 44 1.36326 1.52878 1.72976 1.04968 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.10522 3.96713 2.51402 1.46634 0.26236 3.17876 0.04253 45 1.49202 1.24565 1.78488 1.14096 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04653 3.90311 3.67746 1.46634 0.26236 3.30665 0.03733 46 1.62226 0.97164 1.99984 1.24227 49 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04141 3.89799 3.89799 1.46634 0.26236 3.31588 0.03698 47 1.15511 1.61270 1.53462 1.30900 50 a - - _ 1.38629 1.38629 1.38629 1.38629 0.06008 3.89799 3.26945 1.46634 0.26236 3.31588 0.03698 48 1.50640 1.49845 1.40158 1.17568 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04218 3.88008 3.88008 1.46634 0.26236 3.34714 0.03582 49 1.54082 1.62792 1.10057 1.35955 52 g - - _ 1.38629 1.38629 1.38629 1.38629 0.05901 3.88008 3.30617 1.46634 0.26236 2.85211 0.05946 50 1.41295 1.15159 1.65856 1.38618 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.85912 0.58742 3.87730 3.04384 0.04882 3.15679 0.04349 51 1.23524 1.66876 1.40594 1.28875 100 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04210 3.88175 3.88175 1.46634 0.26236 2.74936 0.06611 52 1.25271 1.45926 1.56234 1.30115 101 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04140 3.89837 3.89837 1.46634 0.26236 3.31519 0.03700 53 1.35454 1.16316 1.62307 1.46039 102 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04140 3.89837 3.89837 1.46634 0.26236 2.69523 0.06992 54 1.47273 1.40201 1.60138 1.13016 103 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04067 3.91563 3.91563 1.46634 0.26236 2.55082 0.08123 55 1.36184 1.61883 1.06857 1.59859 104 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03980 3.93694 3.93694 1.46634 0.26236 2.07531 0.13412 56 1.63181 0.95865 1.78271 1.37503 105 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 3.15173 0.04372 57 1.43487 1.92704 0.77452 1.86206 106 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 3.15173 0.04372 58 2.63186 0.28588 3.21696 1.99051 107 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 3.15173 0.04372 59 0.70999 2.04028 1.66912 1.66101 108 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 3.15173 0.04372 60 2.83153 3.72673 0.12763 3.30160 109 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 3.15173 0.04372 61 0.93065 1.86681 1.66699 1.33837 110 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 3.15173 0.04372 62 1.26944 1.29067 1.94736 1.19974 111 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03812 3.97918 3.97918 1.46634 0.26236 0.08944 2.45858 63 0.06980 3.99267 3.65190 3.77104 112 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 64 2.51283 0.66615 2.27566 1.19550 113 C - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 65 4.07798 0.10651 3.83116 2.77403 114 C - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 66 1.89596 1.47853 0.66031 2.25227 115 G - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 67 1.58670 1.66625 0.70188 2.20011 116 g - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 68 1.69689 1.33384 0.94830 1.79645 117 g - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 69 0.97217 2.00171 2.00825 1.04296 118 a - - , 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 70 1.84353 2.35817 0.87005 1.11407 119 g - - , 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 71 2.83434 4.01095 0.10973 3.60994 120 G - - , 1.38629 1.38629 1.38629 1.38629 0.05054 4.30203 3.33152 1.46634 0.26236 1.09861 0.40547 72 2.64577 2.02493 3.16870 0.28105 121 U - - , 1.38629 1.38629 1.38629 1.38629 0.02809 4.27958 4.27958 1.46634 0.26236 0.56405 0.84142 73 3.09994 0.20518 3.69764 2.15704 122 C - - , 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 74 2.51035 0.71632 1.38781 1.71150 123 c - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 75 2.13101 0.85049 1.30291 1.70189 124 c - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 76 2.01128 1.07778 1.26175 1.41604 125 c - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 77 1.98540 2.24590 0.41130 2.36389 126 G - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 78 2.79069 3.85251 0.11180 3.76487 127 G - - < 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 79 3.02175 2.72328 3.54317 0.15466 128 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 80 3.11967 2.87687 3.64502 0.13537 129 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 81 3.73339 0.08520 4.26808 3.12926 130 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 82 0.67508 2.87145 1.04303 2.50252 131 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 83 0.06980 3.99267 3.65190 3.77104 132 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 84 0.64083 2.35951 1.53257 1.81585 133 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04439 3.51050 4.30203 1.02060 0.44688 1.09861 0.40547 85 2.82383 2.77638 3.21642 0.17643 136 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 86 3.93121 0.13321 3.69657 2.52213 137 C - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 87 2.60202 0.53431 2.10515 1.52338 138 C - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 88 1.86067 1.35459 0.86119 1.80959 139 g - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 89 1.92994 1.45170 0.77688 1.82740 140 g - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 90 1.93394 1.46386 0.65430 2.26073 141 G - - > 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 91 1.32904 0.96745 1.62599 1.84199 142 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 92 1.94510 1.67994 0.56284 2.29211 143 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 93 1.72989 1.85334 0.66521 1.88507 144 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 94 2.40465 0.63737 1.60522 1.71383 145 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 95 2.14998 1.76899 0.46578 2.46086 146 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 96 2.11047 2.50649 0.30872 2.76649 147 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02746 4.30203 4.30203 1.46634 0.26236 1.09861 0.40547 97 3.01796 3.97541 0.09637 3.72129 148 G - - ) 1.38629 1.38629 1.38629 1.38629 0.35274 1.25983 4.30203 1.11150 0.39908 1.09861 0.40547 98 0.06980 3.99267 3.65190 3.77104 152 A - - : 1.38629 1.38629 1.38629 1.38629 0.01382 4.28840 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-Val ACC arch-Val-r2-033017 STATES 239 NODES 64 CLEN 75 W 682 ALPH RNA RF no CONS yes MAP yes DATE Fri Mar 31 13:11:41 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Val-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Val-r2-033017.sto COM [2] cmcalibrate --hfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Val-r2.hfile --sfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Val-r2.sfile --qqfile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Val-r2.qqfile --ffile /hive/users/blin/tRNAscan/models/1.7/cmcalibrate_files/arch-Val-r2.ffile --seed 208 /hive/users/blin/tRNAscan/models/1.7/cm/arch-Val-r2-033017.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 554 EFFN 554.000000 CKSUM 1416514098 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.2253 0.71899 ECMLC 0.73771 -6.13052 2.44599 1600000 671328 0.001788 ECMGC 0.30193 -50.03202 -35.06545 1600000 36694 0.010901 ECMLI 0.65805 -6.87158 2.64473 1600000 629275 0.001907 ECMGI 0.32295 -46.05693 -32.20312 1600000 35087 0.011400 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 682 1426 -14.044 -15.290 -0.001 -11.743 IL 1 1 2 1 4 16 36 685 1429 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 38 685 1429 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 145 - A - - MR 3 2 3 5 5 21 44 684 1428 -2.425 -0.297 -13.909 -14.121 -15.013 1.999 -11.118 -10.357 -10.453 D 4 2 3 5 5 14 32 680 1424 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 20 44 686 1430 -0.590 -1.577 -13.574 -11.742 -12.848 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 141 G C - - MP 6 5 3 10 6 22 43 683 1427 -15.034 -2.479 -0.285 -13.750 -14.030 -14.425 -12.986 -9.591 -15.407 -7.075 -14.604 -10.747 -8.892 -14.819 -10.961 3.998 -11.151 -7.527 -9.260 -11.217 -11.346 -14.552 ML 7 5 3 10 6 15 34 679 1423 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 34 679 1423 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 30 673 1417 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 35 681 1425 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 43 683 1427 -0.590 -1.577 -13.533 -11.701 -12.807 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 137 G C - - MP 12 11 6 16 6 21 41 680 1424 -15.034 -4.379 -0.071 -13.750 -14.030 -14.425 -12.549 -9.659 -13.583 -2.254 -13.389 -10.938 1.711 -13.285 -10.963 3.644 -11.204 -7.511 -8.892 -11.346 -10.626 -12.353 ML 13 11 6 16 6 15 33 677 1421 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 34 677 1421 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 29 672 1416 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 35 679 1423 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 38 678 1422 -0.605 -6.230 -11.653 -1.607 -10.927 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 133 G C - - MP 18 17 6 22 6 21 40 678 1422 -14.963 -14.902 -0.000 -13.679 -13.959 -14.354 -12.645 -9.530 -14.172 -0.330 -14.388 -10.779 -8.814 -13.919 -10.880 3.909 -11.103 -7.412 -2.560 -11.213 -11.209 -12.973 ML 19 17 6 22 6 15 33 675 1419 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 36 675 1419 -12.107 -10.836 -6.745 -10.814 -0.018 -9.028 -6.256 1.983 -6.707 -5.356 D 21 17 6 22 6 12 29 670 1414 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 34 677 1421 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 35 677 1421 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 132 C G - - MP 24 23 6 28 6 21 38 676 1420 -14.963 -14.902 -0.000 -13.679 -13.959 -14.354 -11.896 -11.829 -11.307 -8.083 -9.764 -11.555 3.379 -10.620 -11.360 -1.086 -11.532 1.717 0.868 -11.867 -7.463 -10.184 ML 25 23 6 28 6 15 33 674 1418 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 35 674 1418 -12.107 -10.836 -6.745 -10.814 -0.018 -9.028 -5.594 -7.312 1.986 -6.345 D 27 23 6 28 6 12 29 669 1413 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 34 675 1419 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 34 675 1419 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 131 C G - - MP 30 29 6 34 6 19 36 674 1418 -14.963 -14.902 -0.000 -13.679 -13.959 -14.354 -9.950 -9.703 -9.860 -2.560 -4.618 -10.566 3.100 -9.335 -9.755 1.835 -10.207 -7.317 1.016 -10.091 0.686 -8.485 ML 31 29 6 34 6 15 32 672 1416 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 34 673 1417 -12.107 -10.836 -0.028 -10.814 -5.948 -9.028 -5.594 -7.312 1.986 -6.345 D 33 29 6 34 6 12 29 668 1412 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 33 673 1417 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 33 673 1417 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 130 C G - - MP 36 35 6 40 6 17 34 672 1416 -15.034 -14.973 -0.000 -13.750 -14.030 -14.425 -12.005 -12.215 -11.359 -8.420 -9.732 -11.530 3.244 -10.636 -11.449 2.360 -11.587 -3.463 -1.542 -11.866 -0.069 -10.250 ML 37 35 6 40 6 14 31 670 1414 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 31 670 1414 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 28 667 1411 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 32 671 1415 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 32 671 1415 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 129 G C - - MP 42 41 6 46 4 15 32 670 1414 -14.250 -14.457 -0.000 -12.871 -12.688 -9.601 -14.157 -1.024 -14.452 -10.860 -2.250 -13.927 -10.949 3.903 -11.175 -1.580 -9.210 -11.289 -11.275 -12.946 ML 43 41 6 46 4 13 30 669 1413 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 29 668 1412 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 28 667 1411 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 31 670 1414 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 31 669 1413 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 13 30 668 1412 -15.160 -0.000 -13.814 -11.189 -4.323 -12.179 1.982 D 49 47 6 50 3 11 28 666 1410 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 30 668 1412 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 12 29 667 1411 -15.814 -0.000 -0.422 -0.214 1.237 -4.885 D 52 50 3 53 2 11 28 666 1410 -8.445 -0.004 IL 53 53 3 53 2 12 29 667 1411 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 11 28 666 1410 [ BEGR 45 ] - - - - - - S 55 54 1 56 3 0 2 31 49 -15.160 -0.000 -13.814 IL 56 56 2 56 3 1 3 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 107 - A - - - ML 57 56 2 59 3 1 2 31 49 -15.160 -0.288 -2.465 1.642 -8.446 -2.174 -0.614 D 58 56 2 59 3 0 0 33 52 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 4 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 108 - G - - - ML 60 59 3 62 3 1 6 30 48 -14.872 -0.000 -13.526 -2.339 -11.141 1.926 -10.134 D 61 59 3 62 3 0 0 27 46 -14.119 -9.632 -0.002 IL 62 62 3 62 3 1 4 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 109 - G - - - ML 63 62 3 65 3 1 5 29 47 -14.872 -0.020 -6.169 0.043 -5.747 1.560 -8.947 D 64 62 3 65 3 0 0 26 45 -14.119 -9.632 -0.002 IL 65 65 3 65 3 1 4 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 110 - U - - - ML 66 65 3 68 3 1 5 28 46 -14.852 -0.000 -13.506 -5.113 -1.416 -8.480 1.845 D 67 65 3 68 3 0 0 25 44 -14.206 -4.065 -0.089 IL 68 68 3 68 3 1 3 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 111 - C - - - ML 69 68 3 71 5 1 5 27 45 -13.806 -0.000 -13.621 -13.834 -14.725 -4.155 1.978 -9.715 -8.803 D 70 68 3 71 5 0 0 23 41 -12.079 -7.923 -11.341 -0.009 -9.628 IL 71 71 3 71 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 112 128 C G - - MP 72 71 3 76 6 2 5 26 44 -14.749 -14.688 -0.000 -13.465 -13.745 -14.140 -10.332 -9.127 -10.332 0.563 -10.724 -11.625 3.211 -10.398 -10.213 2.220 -10.716 -1.617 -1.904 -10.797 -8.137 -9.064 ML 73 71 3 76 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 22 41 -13.976 -12.705 -8.614 -12.683 -0.005 -10.897 -8.396 1.996 -8.910 -7.329 D 75 71 3 76 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 113 127 g c - - MP 78 77 6 82 6 2 5 24 42 -14.749 -14.688 -0.000 -13.465 -13.745 -14.140 -9.017 -8.473 -8.984 -0.880 -8.081 -9.777 2.628 -8.661 -8.934 2.748 -9.408 -1.817 1.070 -9.100 -3.639 -3.822 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 21 39 -13.976 -12.705 -8.614 -12.683 -0.005 -10.897 1.997 -8.803 -8.048 -8.168 D 81 77 6 82 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 114 126 G C - - MP 84 83 6 88 6 2 4 22 40 -14.749 -14.688 -0.000 -13.465 -13.745 -14.140 -11.796 -11.968 -11.124 -8.268 -9.477 -11.242 1.555 -10.391 -11.203 3.607 -11.325 -10.319 -2.092 -11.615 -0.659 -10.029 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 20 38 -13.976 -12.705 -8.614 -12.683 -0.005 -10.897 -8.396 1.996 -8.910 -7.329 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 115 125 G C - - MP 90 89 6 94 6 2 3 20 38 -14.749 -14.688 -0.000 -13.465 -13.745 -14.140 -9.486 -8.133 -9.356 1.739 -10.396 -10.095 -1.628 -9.886 -9.614 3.552 -9.941 -5.710 -0.891 -9.346 -7.560 -5.070 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 19 37 -13.976 -12.705 -8.614 -12.683 -0.005 -10.897 -8.396 1.996 -8.910 -7.329 D 93 89 6 94 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 116 124 G C - - MP 96 95 6 100 4 2 2 18 36 -13.962 -14.169 -0.000 -12.583 -12.605 -9.309 -14.621 -1.983 -14.276 -10.496 -8.608 -14.202 -10.673 3.976 -10.874 -7.227 -8.962 -10.954 -11.043 -13.573 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 18 36 -12.001 -11.030 -8.897 -0.004 -8.396 1.996 -8.910 -7.329 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 117 - U - - - ML 102 101 6 104 3 1 2 15 33 -14.872 -0.000 -13.526 -12.087 -10.747 -13.610 2.000 D 103 101 6 104 3 0 0 13 32 -14.119 -9.632 -0.002 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 118 - U - - - ML 105 104 3 107 3 1 2 14 32 -14.872 -0.000 -13.526 -11.005 -5.113 -12.022 1.989 D 106 104 3 107 3 0 0 12 31 -14.119 -9.632 -0.002 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 119 - C - - - ML 108 107 3 110 3 1 1 13 31 -14.872 -0.000 -13.526 -11.153 1.999 -11.871 -9.738 D 109 107 3 110 3 0 0 12 30 -14.119 -0.004 -8.511 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 120 - A - - - ML 111 110 3 113 3 1 1 11 30 -15.160 -0.000 -13.814 1.106 -10.093 0.884 -10.002 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 121 - A - - - ML 114 113 3 116 3 1 1 10 28 -15.160 -0.000 -13.814 1.999 -11.118 -10.357 -10.453 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 122 - A - - - ML 117 116 3 119 3 1 1 8 26 -15.160 -0.000 -13.814 1.862 -4.132 -2.047 -3.909 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 123 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -5.622 -3.729 -5.360 1.956 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 16 646 1390 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 182 1 16 646 1390 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 27 45 -0.001 -13.159 -12.566 -13.206 [ MATP 15 ] 10 29 g c - - MP 127 126 1 131 6 2 6 27 45 -4.379 -14.973 -0.071 -13.750 -14.030 -14.425 -11.203 -9.702 -11.432 -1.729 -13.359 -13.038 1.877 -11.472 -10.836 2.987 -11.431 2.032 -8.755 -12.243 -10.631 -10.042 ML 128 126 1 131 6 1 2 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 2 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 3 26 44 -7.471 -7.734 -5.652 -0.047 -10.165 -9.826 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 U A - - MP 133 132 6 137 6 2 6 25 43 -14.963 -14.902 -0.000 -13.679 -13.959 -14.354 -12.007 -12.288 -11.325 -8.525 -9.675 -11.469 1.655 -10.591 -11.428 -8.497 -11.548 -10.691 3.682 -11.841 -7.378 -10.230 ML 134 132 6 137 6 1 3 25 43 -11.567 -11.913 -6.627 -0.018 -11.763 -9.292 1.989 -6.973 -6.312 -6.486 MR 135 132 6 137 6 1 2 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 C G - - MP 139 138 6 143 6 2 6 23 41 -14.963 -14.902 -0.000 -13.679 -13.959 -14.354 -12.007 -12.288 -11.325 -8.525 -9.675 -11.469 3.979 -10.591 -11.428 -8.497 -11.548 -10.690 -2.195 -11.842 -7.378 -10.230 ML 140 138 6 143 6 1 2 24 42 -11.567 -11.913 -6.627 -0.018 -11.763 -9.292 1.989 -6.973 -6.312 -6.486 MR 141 138 6 143 6 1 2 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 2 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 u u - - MP 145 144 6 149 4 2 5 21 39 -14.178 -14.385 -0.000 -12.799 -12.007 -12.288 -11.325 -8.525 -9.675 -3.305 -1.547 -3.206 1.607 -8.497 -11.548 -10.691 -6.408 -4.683 2.363 2.848 ML 146 144 6 149 4 1 2 23 41 -8.662 -8.845 -0.014 -7.574 -6.256 1.983 -6.707 -5.356 MR 147 144 6 149 4 1 1 26 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 2 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 2 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 151 150 6 153 3 1 3 18 37 -15.160 -0.000 -13.814 1.999 -11.118 -10.357 -10.453 D 152 150 6 153 3 0 0 21 40 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 2 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 154 153 3 156 3 1 2 17 36 -15.160 -0.000 -13.814 -9.687 -11.451 1.999 -10.440 D 155 153 3 156 3 0 0 20 39 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 2 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - C - - - ML 157 156 3 159 3 1 1 16 34 -15.160 -0.394 -2.067 -1.905 1.256 -1.883 0.103 D 158 156 3 159 3 0 0 19 38 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 2 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - C - - - ML 160 159 3 162 3 1 1 15 33 -14.766 -0.538 -1.684 -4.009 1.469 -8.273 0.222 D 161 159 3 162 3 0 0 13 32 -14.516 -10.029 -0.001 IL 162 162 3 162 3 1 2 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - u - - - ML 163 162 3 165 3 1 1 14 32 -14.229 -0.000 -12.883 0.565 -0.748 -7.293 0.940 D 164 162 3 165 3 0 0 13 31 -15.508 -0.002 -9.900 IL 165 165 3 165 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 1 12 31 -15.160 -0.000 -13.814 -9.687 -11.451 1.999 -10.440 D 167 165 3 168 3 0 0 17 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - - - ML 169 168 3 171 3 1 1 11 30 -15.160 -0.000 -13.814 -9.716 -11.424 1.928 -2.375 D 170 168 3 171 3 0 0 16 34 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - - - ML 172 171 3 174 3 1 1 9 28 -2.264 -0.574 -3.055 -2.988 -1.224 -8.692 1.784 D 173 171 3 174 3 0 0 8 27 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 9 28 -7.609 -0.009 -10.309 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - U - - - ML 175 174 3 177 3 1 1 8 27 -14.975 -0.000 -13.629 -0.232 -2.648 -8.527 1.578 D 176 174 3 177 3 0 0 8 27 -13.531 -0.006 -7.923 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - A - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 1.972 -10.919 -10.353 -3.733 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 182 125 1 183 3 0 0 629 1373 -15.160 -0.000 -13.814 IL 183 183 2 183 3 1 1 630 1374 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - G - - - ML 184 183 2 186 5 1 1 629 1373 -14.094 -0.000 -13.909 -14.121 -15.013 -0.164 -9.691 1.625 -5.557 D 185 183 2 186 5 0 0 625 1369 -4.959 -0.803 -4.221 -2.596 -2.508 IL 186 186 3 186 5 1 1 628 1372 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 106 C G - - MP 187 186 3 191 6 2 2 628 1372 -15.034 -14.973 -0.285 -2.479 -14.030 -14.425 -11.711 -11.815 -11.180 -2.015 1.534 -11.430 3.161 -10.489 -11.236 -1.886 -11.430 -9.867 0.355 -11.630 1.237 -10.020 ML 188 186 3 191 6 1 1 626 1370 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 624 1368 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 618 1362 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 627 1371 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 626 1370 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 105 C G - - MP 193 192 6 197 6 2 2 626 1370 -14.749 -14.688 -0.000 -13.465 -13.745 -14.140 -10.179 -9.982 -10.008 -3.309 -3.878 -10.607 3.750 -9.447 -9.934 -0.609 -10.334 -3.447 -0.594 -10.282 -0.066 -8.675 ML 194 192 6 197 6 1 1 625 1369 -13.440 -13.786 -0.006 -8.195 -13.636 -11.165 1.997 -8.803 -8.048 -8.168 MR 195 192 6 197 6 1 1 622 1366 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 616 1360 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 625 1369 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 624 1368 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 104 G C - - MP 199 198 6 203 6 2 2 624 1368 -15.034 -14.973 -0.000 -13.750 -14.030 -14.425 -11.747 -10.225 -11.580 -0.881 -10.601 -11.310 0.548 -11.187 -11.059 3.490 -11.315 -7.965 1.457 -11.452 -8.229 -10.423 ML 200 198 6 203 6 1 1 621 1365 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 620 1364 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 615 1359 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 623 1367 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 622 1366 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 103 C G - - MP 205 204 6 209 6 2 2 622 1366 -15.034 -14.973 -0.000 -13.750 -14.030 -14.425 -11.997 -11.933 -11.396 -8.215 -9.837 -11.612 3.415 -10.702 -11.446 2.409 -11.609 -9.921 -6.558 -11.940 -7.537 -10.279 ML 206 204 6 209 6 1 1 619 1363 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 617 1361 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 614 1358 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 621 1365 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 620 1364 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 102 C G - - MP 211 210 6 215 4 2 2 620 1364 -14.250 -14.457 -0.000 -12.871 -11.961 -11.889 -11.375 -1.765 -9.835 -11.625 3.574 -10.689 -11.427 1.765 -11.601 -9.829 -1.375 -11.934 -7.533 -10.251 ML 212 210 6 215 4 1 1 618 1362 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 614 1358 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 214 210 6 215 4 0 0 612 1356 -4.568 -4.250 -2.265 -0.520 IL 215 215 5 215 4 1 1 619 1363 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 619 1363 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - C - - - ML 217 216 6 219 3 1 1 618 1362 -15.160 -0.000 -13.814 -11.317 1.616 -12.192 -0.098 D 218 216 6 219 3 0 0 610 1354 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 618 1361 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - - - ML 220 219 3 222 3 1 1 617 1361 -15.160 -0.000 -13.814 -11.323 -4.782 -12.348 1.987 D 221 219 3 222 3 0 0 606 1350 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 616 1360 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - u - - - ML 223 222 3 225 3 1 1 616 1360 -15.160 -0.000 -13.814 0.005 -0.005 -0.006 0.006 D 224 222 3 225 3 0 0 600 1344 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 615 1359 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - u - - - ML 226 225 3 228 3 1 1 615 1359 -15.160 -0.000 -13.814 0.005 -0.005 -0.006 0.006 D 227 225 3 228 3 0 0 590 1334 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 613 1357 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - u - - - ML 229 228 3 231 3 1 1 614 1358 -15.160 -0.000 -13.814 0.005 -0.005 -0.006 0.006 D 230 228 3 231 3 0 0 570 1314 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 611 1355 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - A - - - ML 232 231 3 234 3 1 1 613 1357 -1.453 -0.656 -13.814 1.352 -9.862 0.503 -5.105 D 233 231 3 234 3 0 0 480 1224 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 652 1396 -0.036 -5.354 -16.461 0.000 0.000 0.000 0.000 [ MATL 43 ] 101 - C - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 -0.005 1.407 -8.592 -1.522 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-Val ACC arch-Val-r2-033017 LENG 75 MAXL 668 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Mar 31 13:11:41 2017 COM [1] cmbuild -F --enone /hive/users/blin/tRNAscan/models/1.7/cm/arch-Val-r2-033017.cm /hive/users/blin/tRNAscan/models/1.7/alignments/arch-Val-r2-033017.sto NSEQ 554 EFFN 6.369614 CKSUM 1416514098 STATS LOCAL MSV -8.2199 0.71899 STATS LOCAL VITERBI -9.4021 0.71899 STATS LOCAL FORWARD -3.1735 0.71899 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58852 1.30238 1.19016 1.51542 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 0.00000 * 1 3.42344 4.40257 0.05936 4.35949 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 2 2.41934 1.86949 0.36223 2.80194 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.06014 4.56356 3.03783 1.46634 0.26236 1.09861 0.40547 3 2.54998 3.76542 0.14171 3.47758 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02190 4.52533 4.52533 1.46634 0.26236 1.88684 0.16434 4 2.45497 0.75466 1.52501 1.48569 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02190 4.52533 4.52533 1.46634 0.26236 1.88684 0.16434 5 2.36375 0.87776 1.55918 1.27328 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02190 4.52533 4.52533 1.46634 0.26236 0.36111 1.19369 6 2.46444 0.82051 1.30632 1.59001 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 7 2.66439 3.53353 0.13349 3.64490 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 8 3.50381 3.13500 4.02807 0.09584 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 9 1.49904 1.75324 0.71674 2.16195 9 g - - , 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 10 2.05996 1.76186 0.48456 2.46692 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.06014 3.03783 4.56356 0.38958 1.13116 1.09861 0.40547 11 3.36743 1.33209 3.30809 0.40795 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 12 4.03227 0.09469 4.16117 2.86439 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 13 1.90083 1.65949 1.55279 0.80148 14 u - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 14 0.04182 4.49327 4.12476 4.29743 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 15 3.87772 4.88114 0.04153 4.39042 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 16 1.91563 0.76898 2.33209 1.23041 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.22988 4.56356 1.63503 1.46634 0.26236 1.09861 0.40547 17 2.30870 0.58692 3.00116 1.22132 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.28798 4.35958 1.43783 1.46634 0.26236 3.03014 0.04951 18 1.15504 1.67478 2.22470 0.94288 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03353 4.10513 4.10513 1.46634 0.26236 0.05367 2.95163 19 3.87772 4.88114 0.04153 4.39042 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 20 3.30235 4.09279 0.10596 3.05661 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 21 2.54685 2.10567 3.27507 0.27169 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32125 1.76391 2.26930 0.11751 2.19939 1.09861 0.40547 22 1.58800 2.24268 2.74693 0.46941 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02325 4.46600 4.46600 1.46634 0.26236 0.18371 1.78483 23 0.07206 3.99465 3.81672 3.53672 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06014 4.56356 3.03783 1.46634 0.26236 1.09861 0.40547 24 1.47517 2.01392 1.13193 1.15396 26 g - - > 1.38629 1.38629 1.38629 1.38629 0.02190 4.52533 4.52533 1.46634 0.26236 1.88684 0.16434 25 3.11689 4.32698 0.07758 4.06626 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.02190 4.52533 4.52533 1.46634 0.26236 1.88684 0.16434 26 0.44063 3.47459 1.24872 3.25643 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.02190 4.52533 4.52533 1.46634 0.26236 0.36111 1.19369 27 2.71173 0.74334 1.67536 1.30632 29 c - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 28 1.53297 3.37394 0.35780 2.98305 30 G - - , 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 29 2.49910 0.61524 2.29098 1.28676 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 30 2.00811 0.61593 2.15468 1.56217 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 31 2.01341 2.04107 0.56402 1.78580 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 32 2.85968 0.62532 1.22722 2.16703 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 33 2.54649 0.59142 1.56507 1.83865 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 34 2.91833 0.38693 3.58070 1.43138 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 35 3.56178 3.22741 4.08923 0.08861 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 36 1.27911 1.50904 1.52763 1.26039 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 37 1.27911 1.50904 1.52763 1.26039 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 38 1.27911 1.50904 1.52763 1.26039 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 39 0.53778 3.17504 1.16399 2.78178 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.36140 1.22801 4.56356 3.69619 0.02513 1.09861 0.40547 40 1.44584 0.64966 2.86808 1.68513 101 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 41 2.05989 1.64126 0.54089 2.33754 102 G - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 42 2.43118 1.27148 0.57999 2.63461 103 G - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 43 1.93695 0.61205 1.91731 1.79204 104 C - - > 1.38629 1.38629 1.38629 1.38629 0.17537 4.56356 1.89429 1.46634 0.26236 1.09861 0.40547 44 1.84649 2.29898 0.44384 2.29977 105 G - - > 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 0.12980 2.10593 45 1.35396 2.45231 0.58973 2.29051 106 G - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 46 0.42064 2.67055 2.32471 1.73532 107 A - - , 1.38629 1.38629 1.38629 1.38629 0.17537 4.56356 1.89429 1.46634 0.26236 1.09861 0.40547 47 2.70948 4.04488 0.11639 3.65783 108 G - - , 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 48 1.37588 3.09414 0.44634 2.77893 109 G - - , 1.38629 1.38629 1.38629 1.38629 0.03502 4.41274 3.80353 1.46634 0.26236 2.79908 0.06280 49 2.70935 2.16513 3.27109 0.24754 110 U - - , 1.38629 1.38629 1.38629 1.38629 0.02480 4.40252 4.40252 1.46634 0.26236 2.23967 0.11260 50 3.38577 0.10089 4.10654 3.08672 111 C - - , 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 51 1.94204 0.96692 1.21786 1.71216 112 c - - < 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 52 2.05624 1.19797 1.05150 1.51029 113 g - - < 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 53 2.18489 1.70805 0.55087 2.04143 114 G - - < 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 54 1.55516 2.49293 0.49846 2.31558 115 G - - < 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 55 3.01105 4.10249 0.08737 4.02337 116 G - - < 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 56 3.57553 3.39047 4.11772 0.08118 117 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 57 3.39089 3.12889 3.92056 0.10234 118 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 2.79908 0.06280 58 3.99636 0.06615 4.49771 3.36695 119 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02454 4.41274 4.41274 1.46634 0.26236 0.12980 2.10593 59 0.67832 3.28215 0.90987 2.94879 120 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 60 0.04182 4.49327 4.12476 4.29743 121 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 61 0.21454 3.01088 2.48242 2.80846 122 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 62 2.97490 2.78284 3.42954 0.15702 123 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 63 3.97136 0.11390 3.90154 2.67954 124 C - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 64 2.53727 0.55195 2.34527 1.38922 125 C - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 65 2.40660 0.58726 1.57346 1.91935 126 C - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 66 1.49516 1.20991 1.15130 1.82426 127 g - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 67 1.95427 1.21303 0.96351 1.71766 128 g - - > 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 68 3.83419 0.16687 3.39586 2.31713 129 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 69 1.94506 1.38878 0.69933 2.20070 130 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 70 1.60267 1.65911 0.71154 2.14176 131 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 71 1.66130 2.22121 0.68620 1.61875 132 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02107 4.56356 4.56356 1.46634 0.26236 1.09861 0.40547 72 3.60841 0.16605 3.59226 2.31908 133 C - - ) 1.38629 1.38629 1.38629 1.38629 0.06014 3.03783 4.56356 1.16019 0.37604 1.09861 0.40547 73 3.03092 0.39991 1.79872 2.15558 137 C - - ) 1.38629 1.38629 1.38629 1.38629 0.17537 1.89429 4.56356 1.11744 0.39618 1.09861 0.40547 74 4.41513 0.07418 4.25377 3.09682 141 C - - ) 1.38629 1.38629 1.38629 1.38629 0.18022 1.86764 4.56356 1.11694 0.39643 1.09861 0.40547 75 0.04182 4.49327 4.12476 4.29743 145 A - - : 1.38629 1.38629 1.38629 1.38629 0.01059 4.55308 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME arch-SeC ACC arch-SeC-050516 STATES 286 NODES 71 CLEN 89 W 104 ALPH RNA RF yes CONS yes MAP yes DATE Thu May 5 11:04:41 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-SeC-050516.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13 EFFN 13.000000 CKSUM 842893808 NULL 0.000 0.000 0.000 0.000 EFP7GF -6.9737 0.71887 ECMLC 0.57760 -8.28035 2.96458 1600000 794281 0.001511 ECMGC 0.31808 -46.10437 -30.03685 1600000 66317 0.006032 ECMLI 0.54908 -8.38145 3.39493 1600000 771585 0.001555 ECMGI 0.32927 -40.14350 -25.03104 1600000 57961 0.006901 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 104 123 -8.823 -10.069 -0.020 -6.522 IL 1 1 2 1 4 12 44 106 125 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 46 106 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 92 - G - + MR 3 2 3 5 5 16 50 104 123 -8.920 -0.011 -8.736 -8.948 -9.839 -4.645 -6.240 1.972 -5.380 D 4 2 3 5 5 8 39 103 122 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 12 44 105 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 91 G C = = MP 6 5 3 10 6 16 50 103 122 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 7 5 3 10 6 10 41 102 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 10 41 102 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 6 37 99 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 11 43 103 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 11 43 103 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 90 G C = = MP 12 11 6 16 6 16 49 101 120 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 13 11 6 16 6 10 41 100 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 10 41 100 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 6 36 97 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 11 43 101 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 11 43 101 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 89 C G = = MP 18 17 6 22 6 16 48 99 118 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 19 17 6 22 6 9 40 98 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 9 40 98 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 6 36 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 10 42 99 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 11 42 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 88 G C = = MP 24 23 6 28 6 15 46 97 116 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -4.571 0.545 -4.420 1.433 -5.422 -5.037 1.049 -5.045 -4.785 3.022 -5.065 -0.890 -0.850 -4.303 -2.580 -3.376 ML 25 23 6 28 6 9 40 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 9 40 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 6 35 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 10 41 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 10 42 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 87 C G = = MP 30 29 6 34 6 14 44 95 114 -10.245 -4.164 -0.092 -8.961 -9.240 -9.635 -6.075 -6.029 -5.718 -2.052 0.118 -6.109 3.484 -5.105 -5.725 1.221 -6.008 -3.893 -0.647 -6.092 -1.918 -4.505 ML 31 29 6 34 6 9 39 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 9 39 93 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 5 35 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 10 41 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 11 42 94 113 -3.190 -0.268 -6.702 -4.869 -5.975 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 85 g u = = MP 36 35 6 40 6 14 43 93 112 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -3.413 -1.255 -5.060 0.684 -5.534 -3.282 1.201 -4.030 -3.027 1.532 -0.139 2.728 -1.193 -3.865 -2.498 -2.920 ML 37 35 6 40 6 9 39 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 8 38 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 5 35 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 10 40 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 10 40 92 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 84 G C = = MP 42 41 6 46 6 12 41 91 110 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.551 -4.574 -6.605 -1.430 -6.532 -5.918 0.965 -6.728 -5.856 3.708 -6.096 -2.347 -2.470 -5.915 -3.942 -5.510 ML 43 41 6 46 6 8 38 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 8 37 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 5 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 9 39 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 9 39 90 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 83 G C = = MP 48 47 6 52 6 10 39 89 108 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 49 47 6 52 6 8 37 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 7 36 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 5 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 8 38 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 8 38 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 82 G C = = MP 54 53 6 58 4 8 37 87 106 -8.999 -9.206 -0.013 -7.620 -6.551 -4.574 -6.605 -1.430 -6.532 -5.918 0.965 -6.728 -5.856 3.708 -6.096 -2.347 -2.470 -5.915 -3.942 -5.510 ML 55 53 6 58 4 7 36 88 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 6 35 88 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 5 34 87 106 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 7 36 90 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 7 36 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - + - ML 60 59 6 62 3 6 35 85 104 -9.935 -0.005 -8.589 -3.354 -0.768 -4.114 1.704 D 61 59 6 62 3 4 33 84 103 -6.174 -1.687 -0.566 IL 62 62 3 62 3 6 35 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - A - + - ML 63 62 3 65 2 5 34 84 103 -10.528 -0.001 1.117 -4.096 0.766 -3.781 D 64 62 3 65 2 4 33 83 102 -8.445 -0.004 IL 65 65 3 65 2 5 34 85 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 66 65 3 67 185 4 33 83 102 [ BEGL 14 ] - - - - - - S 67 66 1 68 1 0 5 50 69 0.000 [ BIF 15 ] - - - - - - B 68 67 1 69 125 0 5 50 69 [ BEGL 16 ] - - - - - - S 69 68 1 70 4 0 0 30 49 -0.017 -8.205 -7.613 -8.253 [ MATP 17 ] 12 29 C G = = MP 70 69 1 74 6 2 2 30 49 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 71 69 1 74 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 1 74 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 1 74 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 28 C G = = MP 76 75 6 80 6 2 2 28 47 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.504 -6.604 -5.978 -2.694 -4.417 -6.231 3.049 -5.292 -6.033 -2.581 -6.229 -4.657 2.792 -6.428 -2.086 -4.820 ML 77 75 6 80 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 79 75 6 80 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 80 80 5 80 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 81 81 6 81 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 27 G C = = MP 82 81 6 86 6 2 2 26 45 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.602 -4.604 -6.693 -1.464 -6.672 -5.996 -2.030 -6.790 -5.875 3.718 -6.132 -2.358 -2.612 -6.013 0.775 -5.575 ML 83 81 6 86 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 84 81 6 86 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 85 81 6 86 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 86 86 5 86 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 87 87 6 87 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 26 G C = = MP 88 87 6 92 6 2 2 24 43 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -4.612 -3.265 -4.455 1.401 -5.528 -5.074 -0.635 -5.094 -4.824 3.137 -5.100 0.319 1.025 -4.337 -2.644 -3.406 ML 89 87 6 92 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 90 87 6 92 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 91 87 6 92 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 92 92 5 92 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 93 93 6 93 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 25 G C = = MP 94 93 6 98 6 2 2 22 41 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -4.864 -3.471 -4.730 1.385 -5.764 -5.289 -0.878 -5.324 -4.994 3.311 -5.282 -1.095 0.931 -4.603 -2.894 -3.664 ML 95 93 6 98 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 96 93 6 98 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 97 93 6 98 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 98 98 5 98 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 99 99 6 99 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 24 C G = = MP 100 99 6 104 6 2 2 20 39 -10.245 -10.184 -0.163 -8.961 -9.240 -3.303 -5.396 -5.191 -5.248 -1.109 -3.991 -5.868 3.237 -4.721 -5.177 1.245 -5.587 -2.870 1.550 -5.514 -1.543 -3.931 ML 101 99 6 104 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 102 99 6 104 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 103 99 6 104 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 104 104 5 104 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 105 105 6 105 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 23 U A = = MP 106 105 6 110 4 2 2 18 37 -8.783 -8.990 -0.015 -7.404 -6.393 -6.533 -5.825 -2.670 -4.242 -6.047 1.898 -5.127 -5.894 -2.583 -6.068 -4.662 3.514 -6.297 -1.923 -4.688 ML 107 105 6 110 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 108 105 6 110 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 109 105 6 110 4 0 0 17 36 -6.733 -6.415 -0.280 -2.685 IL 110 110 5 110 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 111 111 6 111 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 112 111 6 114 3 1 1 15 33 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 113 111 6 114 3 0 0 16 34 -6.174 -1.687 -0.566 IL 114 114 3 114 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - + - ML 115 114 3 117 3 1 1 13 32 -9.935 -0.005 -8.589 -4.645 -6.240 1.972 -5.380 D 116 114 3 117 3 0 0 15 33 -6.174 -1.687 -0.566 IL 117 117 3 117 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - G - + - ML 118 117 3 120 3 1 1 12 30 -9.935 -0.005 -8.589 -4.645 -6.240 1.972 -5.380 D 119 117 3 120 3 0 0 13 32 -6.174 -1.687 -0.566 IL 120 120 3 120 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - U - + - ML 121 120 3 123 2 1 1 1 1 * 0.000 -4.823 -4.398 -5.641 1.962 D 122 120 3 123 2 0 0 0 0 * 0.000 IL 123 123 3 123 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 124 123 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 125 68 1 126 5 0 0 31 50 -8.920 -0.011 -8.736 -8.948 -9.839 IL 126 126 2 126 5 1 1 33 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 48 G C = = MP 127 126 2 131 6 2 2 31 50 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 128 126 2 131 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 2 131 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 2 131 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 47 G U = = MP 133 132 6 137 6 2 2 29 48 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.138 -5.052 -6.064 -1.407 -5.587 -7.242 1.398 -5.737 -5.796 -1.699 -6.252 3.604 -2.104 -6.968 -3.239 -4.769 ML 134 132 6 137 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 46 C G = = MP 139 138 6 143 6 2 2 27 46 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 140 138 6 143 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 45 G C = = MP 145 144 6 149 6 2 2 25 44 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 146 144 6 149 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 148 144 6 149 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 149 149 5 149 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 150 150 6 150 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 44 G C = = MP 151 150 6 155 6 2 2 23 42 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 152 150 6 155 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 153 150 6 155 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 154 150 6 155 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 155 155 5 155 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 156 156 6 156 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 35 43 A U = = MP 157 156 6 161 4 2 2 21 40 -8.999 -9.206 -0.013 -7.620 -7.270 -6.001 -5.907 3.958 -8.780 -9.944 -4.482 -5.783 -7.038 -2.652 -7.658 -3.203 -4.726 -8.621 -6.340 -5.293 ML 158 156 6 161 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 159 156 6 161 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 160 156 6 161 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 161 161 5 161 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 162 162 6 162 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - + - ML 163 162 6 165 3 1 1 19 37 -9.935 -0.005 -8.589 -5.233 1.965 -5.733 -4.331 D 164 162 6 165 3 0 0 19 37 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - + - ML 166 165 3 168 3 1 1 17 36 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 167 165 3 168 3 0 0 18 36 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - + - ML 169 168 3 171 3 1 1 16 35 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 170 168 3 171 3 0 0 17 35 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - C - + - ML 172 171 3 174 3 1 1 15 33 -9.935 -0.005 -8.589 -5.233 1.965 -5.733 -4.331 D 173 171 3 174 3 0 0 16 34 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 175 174 3 177 3 1 1 13 32 -9.935 -0.005 -8.589 1.975 -5.761 -5.179 -5.418 D 176 174 3 177 3 0 0 15 33 -6.174 -1.687 -0.566 IL 177 177 3 177 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - + - ML 178 177 3 180 3 1 1 12 30 -9.935 -0.005 -8.589 -4.645 -6.240 1.972 -5.380 D 179 177 3 180 3 0 0 13 32 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - + - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.975 -5.761 -5.179 -5.418 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 44 ] - - - - - - S 185 66 1 186 2 0 3 45 63 -10.528 -0.001 IL 186 186 2 186 2 1 4 47 66 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 45 ] - - - - - - B 187 186 2 188 238 0 3 45 63 [ BEGL 46 ] - - - - - - S 188 187 1 189 4 0 0 28 46 -0.017 -8.205 -7.613 -8.253 [ MATP 47 ] 49 66 G C = = MP 189 188 1 193 6 2 2 28 46 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.423 0.823 -8.202 -1.893 -8.981 -6.068 -3.678 -8.318 -6.062 3.761 -6.312 -2.532 -3.979 -6.369 -5.933 -7.020 ML 190 188 1 193 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 1 193 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 1 193 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 50 65 A U = = MP 195 194 6 199 6 2 2 26 44 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.208 -5.275 -6.042 3.615 -5.304 -7.032 1.441 -5.657 -5.854 -1.801 -6.279 -2.690 -1.847 -6.860 -2.967 -4.785 ML 196 194 6 199 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 64 G C = = MP 201 200 6 205 6 2 2 24 42 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.843 -4.587 -7.249 -1.521 -8.444 -6.191 -3.337 -7.462 -5.920 3.656 -6.234 1.436 -3.582 -6.297 -5.479 -6.026 ML 202 200 6 205 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 63 u a = = MP 207 206 6 211 6 2 2 22 40 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -5.198 -4.820 -5.079 -0.866 -4.024 -5.725 1.694 -4.690 -5.055 2.338 -5.466 -2.511 2.653 -5.286 -1.572 -3.811 ML 208 206 6 211 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 6 211 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 62 u a = = MP 213 212 6 217 6 2 2 20 38 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -5.198 -4.820 -5.079 -0.866 -4.024 -5.725 1.694 -4.690 -5.055 2.338 -5.466 -2.511 2.653 -5.286 -1.572 -3.811 ML 214 212 6 217 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 6 1 1 19 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 216 212 6 217 6 0 0 17 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 217 217 5 217 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 218 218 6 218 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 61 C G = = MP 219 218 6 223 4 2 2 18 36 -1.288 -9.206 -0.777 -7.620 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 220 218 6 223 4 1 1 16 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 221 218 6 223 4 1 1 17 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 222 218 6 223 4 0 0 16 34 -4.568 -4.250 -2.265 -0.520 IL 223 223 5 223 4 1 1 17 35 -4.755 -1.116 -1.007 -7.923 0.000 0.000 0.000 0.000 IR 224 224 6 224 3 1 1 16 35 -2.933 -0.236 -5.633 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - G - + - ML 225 224 6 227 3 1 1 15 33 -9.935 -0.005 -8.589 -1.776 -4.850 1.857 -4.286 D 226 224 6 227 3 0 0 16 34 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - a - + - ML 228 227 3 230 3 1 1 13 32 -9.935 -0.005 -8.589 0.960 -1.985 -1.274 0.473 D 229 227 3 230 3 0 0 15 33 -6.174 -1.687 -0.566 IL 230 230 3 230 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - g - + - ML 231 230 3 233 3 1 1 12 30 -9.935 -0.005 -8.589 -0.389 -1.090 0.480 0.456 D 232 230 3 233 3 0 0 13 32 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - u - + - ML 234 233 3 236 2 1 1 1 1 * 0.000 -0.155 -1.897 0.333 0.654 D 235 233 3 236 2 0 0 0 0 * 0.000 IL 236 236 3 236 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 237 236 3 -1 0 0 0 0 0 [ BEGR 58 ] - - - - - - S 238 187 1 239 5 0 0 27 46 -8.920 -0.011 -8.736 -8.948 -9.839 IL 239 239 2 239 5 1 1 29 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 67 81 G C = = MP 240 239 2 244 6 2 2 27 46 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 241 239 2 244 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 242 239 2 244 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 243 239 2 244 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 244 244 5 244 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 245 245 6 245 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 68 80 G C = = MP 246 245 6 250 6 2 2 25 44 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 247 245 6 250 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 248 245 6 250 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 249 245 6 250 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 250 250 5 250 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 251 251 6 251 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 69 79 G C = = MP 252 251 6 256 6 2 2 23 42 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 253 251 6 256 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 254 251 6 256 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 255 251 6 256 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 256 256 5 256 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 257 257 6 257 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 70 78 G C = = MP 258 257 6 262 4 2 2 21 40 -8.999 -9.206 -0.013 -7.620 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 259 257 6 262 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 260 257 6 262 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 261 257 6 262 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 262 262 5 262 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 263 263 6 263 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 71 - U - + - ML 264 263 6 266 3 1 1 19 37 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 265 263 6 266 3 0 0 19 37 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 72 - U - + - ML 267 266 3 269 3 1 1 17 36 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 268 266 3 269 3 0 0 18 36 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 73 - C - + - ML 270 269 3 272 3 1 1 16 35 -9.935 -0.005 -8.589 -5.233 1.965 -5.733 -4.331 D 271 269 3 272 3 0 0 17 35 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 74 - G - + - ML 273 272 3 275 3 1 1 15 33 -9.935 -0.005 -8.589 -0.806 -4.237 1.723 -3.755 D 274 272 3 275 3 0 0 16 34 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 75 - A - + - ML 276 275 3 278 3 1 1 13 32 -9.935 -0.005 -8.589 1.975 -5.761 -5.179 -5.418 D 277 275 3 278 3 0 0 15 33 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 279 278 3 281 3 1 1 12 30 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 280 278 3 281 3 0 0 13 32 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - U - + - ML 282 281 3 284 2 1 1 1 1 * 0.000 -4.823 -4.398 -5.641 1.962 D 283 281 3 284 2 0 0 0 0 * 0.000 IL 284 284 3 284 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 285 284 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-SeC ACC arch-SeC-050516 LENG 89 MAXL 182 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Thu May 5 11:04:41 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-SeC-050516.sto NSEQ 13 EFFN 1.964600 CKSUM 842893808 STATS LOCAL MSV -9.1557 0.71887 STATS LOCAL VITERBI -10.0884 0.71887 STATS LOCAL FORWARD -3.2829 0.71887 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.81743 1.25154 1.10290 1.51601 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 0.00000 * 1 2.45548 3.03333 0.20476 2.97240 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 2 2.45996 3.03816 0.20358 2.97925 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 3 3.00119 0.29258 2.75371 1.96438 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 4 1.51120 1.82200 0.76907 1.86943 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 5 2.16789 0.75522 1.68736 1.46678 5 c = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 6 1.66934 1.63552 0.85444 1.65414 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 7 2.06777 1.90715 0.49616 2.15277 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 8 2.46198 3.04034 0.20305 2.98234 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 9 2.06776 1.90714 0.49616 2.15276 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 10 2.02371 1.70716 2.53676 0.49868 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 11 0.83834 2.35499 1.10742 1.95003 11 a + - , 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 12 3.01637 0.29054 2.76042 1.96686 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 13 2.44840 0.84927 2.17899 0.98702 13 c = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 14 1.95779 1.99290 0.59502 1.76621 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 15 1.65567 2.02237 0.68900 1.74516 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 16 1.68421 2.05461 0.65511 1.79048 16 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 17 2.17694 0.87709 1.60178 1.31274 17 c = - < 1.38629 1.38629 1.38629 1.38629 0.13472 3.86177 2.25368 1.46634 0.26236 1.09861 0.40547 18 2.38029 1.15991 2.09166 0.75400 18 u = - < 1.38629 1.38629 1.38629 1.38629 0.04701 3.77405 3.77405 1.46634 0.26236 0.33686 1.25180 19 2.43331 2.42777 2.94272 0.25968 19 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 20 2.50173 3.35060 0.18710 2.92565 20 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 21 2.50173 3.35060 0.18710 2.92565 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 22 2.43331 2.42777 2.94272 0.25968 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13472 3.86177 2.25368 1.46634 0.26236 1.09861 0.40547 23 0.86778 2.25443 1.02686 2.14515 23 a = - > 1.38629 1.38629 1.38629 1.38629 0.04701 3.77405 3.77405 1.46634 0.26236 0.33686 1.25180 24 1.51287 1.72992 0.77847 1.94270 24 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 25 1.98344 0.73978 1.87627 1.46089 25 c = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 26 1.93826 0.81202 1.84159 1.37231 26 c = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 27 2.21378 0.66615 1.64127 1.69664 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 28 1.12821 2.34134 0.75438 2.20828 28 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 29 2.23498 2.91563 0.25469 2.75392 29 G = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 30 2.46965 3.04862 0.20104 2.99412 30 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 31 1.91499 1.66293 0.64364 1.98270 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 32 3.01168 0.29116 2.75835 1.96610 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 33 2.46619 3.04488 0.20194 2.98880 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 34 2.46535 3.04397 0.20216 2.98751 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 35 0.42918 2.54873 1.67236 2.48927 35 A = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 36 2.61581 0.25445 3.18754 2.20479 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 37 2.43331 2.42777 2.94272 0.25968 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 38 2.43331 2.42777 2.94272 0.25968 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 39 2.61581 0.25445 3.18754 2.20479 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 40 0.19080 3.04889 2.79188 2.73355 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 41 2.50173 3.35060 0.18710 2.92565 41 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 42 0.19080 3.04889 2.79188 2.73355 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 43 2.71940 1.94485 2.36272 0.36110 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 44 3.20114 0.23769 2.87616 2.16728 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 45 3.20408 0.23737 2.87739 2.16785 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 46 2.24388 2.92684 0.25154 2.76804 46 G = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 47 2.22297 1.62832 1.53222 0.73523 47 u = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 48 3.21979 0.23567 2.88390 2.17084 48 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 49 1.85381 2.67968 0.36112 2.55262 49 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 50 0.90208 1.55009 1.51906 1.81322 50 a = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 51 2.08686 2.71833 0.30743 2.59554 51 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 52 2.00581 1.37293 1.20409 1.16437 52 u = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 53 2.00545 1.37299 1.20416 1.16441 53 u = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 54 3.00474 0.29210 2.75528 1.96497 54 C = - < 1.38629 1.38629 1.38629 1.38629 0.33946 1.32120 3.86177 0.15081 1.96620 1.09861 0.40547 55 1.92105 2.92518 0.33005 2.51325 56 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 56 0.94091 1.96390 1.89833 1.14068 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 57 1.39514 1.82119 1.31974 1.12960 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 58 1.33489 1.95894 1.37881 1.06733 59 u + - _ 1.38629 1.38629 1.38629 1.38629 0.17954 1.94271 3.86177 0.27139 1.43681 1.09861 0.40547 59 2.23982 2.92173 0.25297 2.76160 61 G = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 60 1.32248 1.31069 1.22584 1.76971 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 61 1.32247 1.31071 1.22586 1.76967 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 62 2.81880 0.44629 2.53301 1.51001 64 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 63 2.05311 1.70510 1.41257 0.80656 65 u = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 64 2.76708 0.36686 2.48800 1.82528 66 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 65 2.46965 3.04862 0.20104 2.99412 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 66 2.46835 3.04721 0.20138 2.99212 68 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 67 2.46719 3.04596 0.20168 2.99033 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 68 2.46619 3.04488 0.20194 2.98880 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 69 2.43331 2.42777 2.94272 0.25968 71 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 70 2.43331 2.42777 2.94272 0.25968 72 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 71 2.61581 0.25445 3.18754 2.20479 73 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 72 1.59611 2.69755 0.46458 2.28724 74 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 73 0.19080 3.04889 2.79188 2.73355 75 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 74 2.43331 2.42777 2.94272 0.25968 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 75 2.43331 2.42777 2.94272 0.25968 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 76 3.20408 0.23737 2.87739 2.16785 78 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 77 3.20789 0.23696 2.87898 2.16858 79 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 78 3.21292 0.23641 2.88106 2.16954 80 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 79 3.21979 0.23567 2.88390 2.17084 81 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 80 2.39593 0.55606 1.77165 1.79942 82 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 81 3.18926 0.23900 2.87120 2.16499 83 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 82 2.39535 0.55621 1.77159 1.79928 84 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 83 1.87910 1.26204 1.41810 1.13313 85 u = - ) 1.38629 1.38629 1.38629 1.38629 0.09226 2.70158 3.86177 0.54041 0.87350 1.09861 0.40547 84 1.61132 1.81966 0.70170 1.94804 87 g = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 85 2.10870 0.81163 1.66177 1.40785 88 c = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 86 2.24098 2.92319 0.25256 2.76343 89 G = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 87 3.20030 0.23778 2.87581 2.16712 90 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 88 3.20327 0.23746 2.87706 2.16769 91 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 89 2.50173 3.35060 0.18710 2.92565 92 G + - : 1.38629 1.38629 1.38629 1.38629 0.02172 3.84051 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-SerGCT.cm0000644000543100007160000014717712573631164021773 0ustar pchanlowelabINFERNAL1/a [1.1 | October 2013] NAME aligntrnadb-Ser-GCT-D_arm4 STATES 242 NODES 62 CLEN 76 W 133 ALPH RNA RF yes CONS yes MAP yes DATE Mon Feb 23 12:27:00 2015 COM [1] cmbuild --hand --enone Ser-GCT_model.cm aligntrnadb-Ser-GCT-D_arm4.sto COM [2] cmcalibrate --seed 208 Ser-GCT_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3771917286 NULL 0.000 0.000 0.000 0.000 EFP7GF -14.6907 0.71882 ECMLC 0.65181 -5.75978 3.20688 1600000 414408 0.002896 ECMGC 0.33159 -30.51674 -15.26176 1600000 62932 0.006356 ECMLI 0.66618 -4.95607 3.70964 1600000 385767 0.003111 ECMGI 0.32977 -26.95359 -11.87263 1600000 57802 0.006920 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 133 216 -13.075 -14.320 -7.388 -0.009 IL 1 1 2 1 4 9 31 134 217 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 9 31 134 218 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 103 - a - + MR 3 2 3 5 3 8 30 133 216 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 4 2 3 5 3 7 32 130 214 -15.570 -10.748 -0.001 IR 5 5 3 5 3 8 30 133 217 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 102 - a - + MR 6 5 3 8 3 7 29 132 215 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 7 5 3 8 3 7 32 130 214 -15.570 -10.748 -0.001 IR 8 8 3 8 3 7 29 132 216 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 101 - a - + MR 9 8 3 11 3 6 28 131 214 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 10 8 3 11 3 7 32 130 214 -15.570 -0.002 -9.800 IR 11 11 3 11 3 5 26 131 215 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 100 - A - + MR 12 11 3 14 5 9 34 130 214 -13.126 -0.001 -12.941 -13.153 -14.045 1.728 -4.960 -1.375 -1.894 D 13 11 3 14 5 3 22 128 211 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 4 24 130 213 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 99 G C = = MP 15 14 3 19 6 10 33 129 213 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.613 -8.702 -10.991 1.556 -12.801 -10.926 -7.892 -11.009 -9.911 3.456 -10.376 1.051 -7.981 -10.884 -9.942 -9.610 ML 16 14 3 19 6 4 23 126 210 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 4 23 126 210 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 2 20 122 205 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 4 24 128 212 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 4 24 128 211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 98 A U = = MP 21 20 6 25 6 9 32 127 211 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -0.708 -10.294 3.922 -12.435 -13.590 -7.893 -10.336 -9.854 -2.985 -10.524 -3.484 -7.818 -11.599 -9.723 -8.892 ML 22 20 6 25 6 4 23 124 208 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 4 23 124 208 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 2 20 119 203 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 4 24 126 210 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 4 24 126 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 97 G C = = MP 27 26 6 31 6 9 30 125 209 -14.078 -5.519 -0.032 -12.794 -13.073 -13.468 -10.024 -8.586 -10.181 2.397 -12.036 -11.827 -7.315 -3.040 -9.766 3.356 -10.346 -2.297 -7.376 -2.789 -9.237 -8.843 ML 28 26 6 31 6 4 23 122 206 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 4 23 122 206 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 2 20 117 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 4 23 124 208 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 5 26 124 207 -4.748 -0.085 -8.259 -6.427 -7.533 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 95 A U = = MP 33 32 6 37 6 9 28 123 206 -4.832 -14.017 -0.052 -12.794 -13.073 -13.468 -0.803 -0.508 -10.294 3.731 -12.435 -13.590 -7.893 -10.336 -9.854 0.467 -10.524 -4.472 -7.818 -11.599 -9.724 -8.892 ML 34 32 6 37 6 4 22 120 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 4 22 120 204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 2 20 115 199 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 5 26 122 205 -6.138 -6.401 -0.051 -8.056 -8.833 -8.493 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 4 23 122 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 94 A U = = MP 39 38 6 43 6 9 26 121 204 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -1.040 0.035 -10.275 3.661 -12.392 -13.447 -7.835 -3.620 -9.846 0.374 -10.511 -2.338 -3.322 -2.727 -9.673 -8.878 ML 40 38 6 43 6 4 22 118 202 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 4 22 118 201 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 2 19 113 197 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 4 23 120 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 4 23 120 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 93 A U = = MP 45 44 6 49 6 7 24 119 202 -5.003 -14.017 -0.046 -12.794 -13.073 -13.468 -10.098 -2.318 -10.293 3.853 -12.432 -13.584 -7.890 -3.748 -9.854 -0.748 -10.523 -2.646 -2.811 -3.321 -9.721 -1.919 ML 46 44 6 49 6 4 21 115 199 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 4 21 115 199 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 2 19 111 195 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 5 23 118 201 -5.983 -6.245 -0.057 -7.901 -8.677 -8.337 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 4 22 118 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 92 G C = = MP 51 50 6 55 3 5 22 117 200 -0.002 -22.496 -9.192 -11.629 -2.404 -12.904 0.498 -13.446 -9.952 -7.930 -12.728 -9.987 3.840 -10.229 -3.942 -8.238 -10.363 -10.296 -11.649 ML 52 50 6 55 3 3 20 111 194 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 3 3 20 111 194 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 54 50 6 55 3 2 19 110 193 -1.585 -1.585 -1.585 IL 55 55 5 55 3 3 21 115 198 -0.317 -7.131 -2.393 0.000 0.000 0.000 0.000 IR 56 56 6 56 2 3 19 68 94 -5.387 -0.035 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 57 56 6 121 58 2 18 67 93 [ BEGR 45 ] - - - - - - S 58 57 1 59 3 0 2 37 63 -14.190 -0.142 -3.419 IL 59 59 2 59 3 1 3 40 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 61 - c - + - ML 60 59 2 62 3 1 2 37 63 -14.049 -2.489 -0.283 -0.214 0.704 -1.999 0.332 D 61 59 2 62 3 0 1 36 62 -12.210 -7.723 -0.007 IL 62 62 3 62 3 1 3 40 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 62 - U - + - ML 63 62 3 65 3 1 2 37 63 -3.166 -0.172 -10.215 -5.416 0.663 -6.380 1.252 D 64 62 3 65 3 0 1 36 62 -15.357 -0.002 -9.749 IL 65 65 3 65 3 1 1 37 63 -3.485 -0.157 -6.185 0.000 0.000 0.000 0.000 [ MATL 48 ] 64 - C - + - ML 66 65 3 68 5 1 3 36 62 -13.126 -0.001 -12.941 -13.153 -14.045 -1.571 1.213 -7.415 0.421 D 67 65 3 68 5 0 0 35 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 36 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 65 90 C G = = MP 69 68 3 73 6 2 3 35 61 -14.078 -2.841 -0.217 -12.794 -13.073 -13.468 -11.109 -11.391 -1.389 -7.628 -8.777 -10.571 3.845 -9.692 -10.530 -7.599 -10.650 -9.795 0.033 -10.943 -2.278 -9.332 ML 70 68 3 73 6 1 1 33 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 34 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 34 60 -7.166 -0.016 -10.677 -8.845 -9.950 0.000 0.000 0.000 0.000 [ MATP 50 ] 66 88 C G = = MP 75 74 6 79 6 2 3 33 59 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.022 -8.710 -1.371 0.570 -7.780 -9.720 3.677 -8.452 -8.834 -0.964 -9.303 -1.536 -1.786 -9.202 -2.581 -7.572 ML 76 74 6 79 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 33 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 33 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 33 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 67 87 A U = = MP 81 80 6 85 6 2 3 31 57 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.077 -3.485 -7.902 3.281 -8.891 -8.506 -0.688 -2.089 -8.319 1.634 -8.577 -1.529 0.718 -7.766 -3.982 -2.700 ML 82 80 6 85 6 1 1 30 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 68 86 U A = = MP 87 86 6 91 6 2 2 29 55 -14.078 -14.017 -0.094 -5.054 -5.206 -7.481 -2.738 -3.853 -2.075 0.846 -1.592 -8.911 0.915 -7.738 -7.969 -0.383 -8.494 -3.751 3.346 -8.238 -1.022 -6.775 ML 88 86 6 91 6 1 1 28 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 30 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 69 85 g c = = MP 93 92 6 97 4 2 2 24 49 -5.422 -13.392 -0.035 -11.806 -1.312 -1.875 -4.340 2.429 0.515 -8.350 -0.302 -2.098 -4.690 2.777 -8.428 -3.195 -1.869 -7.610 -3.054 -6.721 ML 94 92 6 97 4 1 1 25 51 -7.123 -7.306 -0.290 -2.566 -4.643 1.948 -5.223 -3.719 MR 95 92 6 97 4 1 1 32 58 -8.425 -0.114 -5.321 -4.382 1.953 -4.851 -4.305 -4.568 D 96 92 6 97 4 0 0 25 51 -6.468 -6.150 -0.344 -2.420 IL 97 97 5 97 4 1 1 27 52 -4.801 -5.484 -0.093 -7.970 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 31 57 -1.037 -0.980 -7.542 0.000 0.000 0.000 0.000 [ MATL 54 ] 71 - u - + - ML 99 98 6 101 3 1 1 16 35 -1.327 -0.734 -12.837 -0.555 0.520 -4.584 0.882 D 100 98 6 101 3 0 0 16 35 -8.374 -0.235 -2.766 IL 101 101 3 101 3 1 1 16 34 -4.084 -0.089 -10.349 0.000 0.000 0.000 0.000 [ MATL 55 ] 74 - U - + - ML 102 101 3 104 3 1 1 15 33 -14.190 -0.000 -12.844 -1.143 -0.840 -7.671 1.577 D 103 101 3 104 3 0 0 18 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 75 - A - + - ML 105 104 3 107 3 1 1 13 32 -14.190 -0.000 -12.844 1.282 -1.925 -3.928 0.310 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 76 - A - + - ML 108 107 3 110 3 1 1 12 30 -3.471 -0.143 -7.851 1.896 -7.824 -3.747 -2.320 D 109 107 3 110 3 0 0 13 31 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 12 30 -5.500 -0.037 -8.200 0.000 0.000 0.000 0.000 [ MATL 58 ] 78 - A - + - ML 111 110 3 113 3 1 1 11 29 -14.184 -0.060 -4.627 1.560 -0.098 -7.480 -3.171 D 112 110 3 113 3 0 0 13 32 -8.139 -0.280 -2.531 IL 113 113 3 113 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 79 - A - + - ML 114 113 3 116 3 1 1 10 18 -1.725 -0.773 -3.156 1.325 -0.025 -2.712 -1.474 D 115 113 3 116 3 0 0 5 14 -11.022 -1.308 -0.748 IL 116 116 3 116 3 1 1 9 18 -3.074 -0.184 -9.999 0.000 0.000 0.000 0.000 [ MATL 60 ] 82 - A - + - ML 117 116 3 119 2 1 1 1 1 * 0.000 1.110 -0.398 -1.154 -0.658 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 13 ] - - - - - - S 121 57 1 122 1 0 2 45 62 0.000 [ BIF 14 ] - - - - - - B 122 121 1 123 176 0 2 45 62 [ BEGL 15 ] - - - - - - S 123 122 1 124 4 0 0 26 44 -0.018 -6.436 -11.604 -12.244 [ MATP 16 ] 19 38 A U = = MP 124 123 1 128 6 2 2 26 44 -4.137 -14.001 -0.085 -12.777 -13.057 -13.452 0.453 -1.788 -1.661 3.637 -12.098 -13.360 -0.101 -10.300 -9.846 -1.108 -10.507 -6.054 -3.778 -11.556 -9.463 -3.407 ML 125 123 1 128 6 1 1 24 42 -8.758 -9.104 -3.818 -0.133 -8.954 -6.483 1.853 -3.243 -2.792 -2.875 MR 126 123 1 128 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 25 43 -6.772 -7.034 -0.033 -8.690 -9.466 -9.126 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 21 37 a a = = MP 130 129 6 134 6 2 2 24 42 -14.062 -14.001 -0.001 -12.777 -13.057 -13.452 2.943 -0.787 -3.094 2.526 -12.415 -13.564 -7.872 -1.216 -2.354 -0.501 -10.506 -4.540 -2.565 -11.579 -9.703 -1.714 ML 131 129 6 134 6 1 1 23 41 -8.758 -9.104 -0.160 -3.513 -8.954 -6.483 1.853 -3.243 -2.792 -2.875 MR 132 129 6 134 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 22 36 G C = = MP 136 135 6 140 6 2 2 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.036 -2.811 -14.486 -6.122 -13.655 -9.790 -7.939 -13.887 -10.006 3.966 -10.195 -2.604 -8.306 -4.635 -10.394 -13.647 ML 137 135 6 140 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 22 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 23 35 A U = = MP 142 141 6 146 6 2 2 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 1.100 -10.294 3.555 -12.435 -13.590 -7.893 -10.336 -9.854 0.978 -10.524 -3.109 -7.818 -11.599 -9.724 -8.892 ML 143 141 6 146 6 1 1 21 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 1 21 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 6 146 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 21 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 24 34 A U = = MP 148 147 6 152 4 2 2 18 36 -13.280 -5.950 -0.024 -11.901 -3.503 2.747 -10.294 3.095 -12.434 -13.589 -7.892 -10.336 -9.854 -0.677 -10.524 -6.045 -7.817 -11.599 -9.723 -8.892 ML 149 147 6 152 4 1 1 21 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 151 147 6 152 4 0 0 20 37 -4.568 -4.250 -2.265 -0.520 IL 152 152 5 152 4 1 1 22 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 153 153 6 153 3 1 1 17 35 -3.366 -0.171 -6.066 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - C - + - ML 154 153 6 156 3 1 1 15 34 -14.190 -0.000 -12.844 -9.246 1.952 -9.646 -2.972 D 155 153 6 156 3 0 0 19 37 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - U - + - ML 157 156 3 159 3 1 1 14 33 -14.190 -0.000 -12.844 -9.572 -3.868 -10.443 1.974 D 158 156 3 159 3 0 0 18 36 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - G - * - ML 160 159 3 162 3 1 1 13 31 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 161 159 3 162 3 0 0 17 35 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - C - * - ML 163 162 3 165 3 1 1 11 30 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 164 162 3 165 3 0 0 16 34 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - U - * - ML 166 165 3 168 3 1 1 10 28 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 167 165 3 168 3 0 0 14 33 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - A - + - ML 169 168 3 171 3 1 1 7 13 -4.726 -0.056 -12.844 1.999 -10.184 -9.419 -9.524 D 170 168 3 171 3 0 0 5 12 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 7 13 -4.359 -0.083 -7.060 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - A - + - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.946 -2.793 -9.134 -8.942 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 176 122 1 177 3 0 0 27 45 -14.190 -0.000 -12.844 IL 177 177 2 177 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 39 - G - + - ML 178 177 2 180 3 1 1 27 45 -14.190 -0.000 -12.844 -0.800 -0.761 1.172 -0.780 D 179 177 2 180 3 0 0 29 48 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 40 - C - + - ML 181 180 3 183 5 1 1 26 44 -13.126 -6.950 -12.941 -13.153 -0.012 0.332 1.116 -1.955 -1.658 D 182 180 3 183 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 60 g c = = MP 184 183 3 188 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 185 183 3 188 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 188 188 5 188 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 42 59 g c = = MP 190 189 6 194 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 191 189 6 194 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 194 194 5 194 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 43 58 g c = = MP 196 195 6 200 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 197 195 6 200 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 16 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 200 200 5 200 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 44 57 g c = = MP 202 201 6 206 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 203 201 6 206 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 15 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 206 206 5 206 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 45 56 g c = = MP 208 207 6 212 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 209 207 6 212 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 211 207 6 212 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 212 212 5 212 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 46 55 g c = = MP 214 213 6 218 6 2 2 20 38 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 215 213 6 218 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 216 213 6 218 6 1 1 18 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 217 213 6 218 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 218 218 5 218 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 219 219 6 219 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 47 54 g c = = MP 220 219 6 224 4 2 2 18 36 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 221 219 6 224 4 1 1 17 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 222 219 6 224 4 1 1 17 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 223 219 6 224 4 0 0 13 31 -13.489 -5.380 -4.355 -0.109 IL 224 224 5 224 4 1 1 19 36 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 225 225 6 225 3 1 1 16 35 -3.803 -0.125 -6.503 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - U - + - ML 226 225 6 228 3 1 1 15 34 -10.521 -0.003 -9.175 -3.638 -3.539 -0.891 1.720 D 227 225 6 228 3 0 0 10 28 -15.493 -11.006 -0.001 IL 228 228 3 228 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - c - + - ML 229 228 3 231 3 1 1 14 32 -10.521 -0.106 -3.839 0.278 0.419 -2.769 0.383 D 230 228 3 231 3 0 0 10 28 -15.493 -5.313 -0.037 IL 231 231 3 231 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - C - + - ML 232 231 3 234 3 1 1 13 31 -10.809 -3.913 -0.100 -4.310 1.520 -5.346 0.079 D 233 231 3 234 3 0 0 8 27 -15.466 -10.979 -0.001 IL 234 234 3 234 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 51 - a - + - ML 235 234 3 237 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 236 234 3 237 3 0 0 7 25 -15.602 -3.957 -0.096 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 52 - C - + - ML 238 237 3 240 2 1 1 1 1 * 0.000 -0.070 1.239 -3.415 -0.753 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME aligntrnadb-Ser-GCT-D_arm4 LENG 76 MAXL 147 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Mon Feb 23 12:27:00 2015 COM [1] cmbuild --hand --enone Ser-GCT_model.cm aligntrnadb-Ser-GCT-D_arm4.sto NSEQ 282 EFFN 26.209442 CKSUM 3771917286 STATS LOCAL MSV -8.6550 0.71882 STATS LOCAL VITERBI -8.9794 0.71882 STATS LOCAL FORWARD -3.8330 0.71882 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15893 1.43855 1.67233 1.34287 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 0.00000 * 1 1.70644 4.66677 0.22603 4.47491 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 2 0.04649 5.55994 3.33029 5.15152 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 3 1.21060 3.37879 0.46546 3.21777 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 4 0.12704 5.49637 2.21586 5.09280 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.04115 3.30468 5.62539 0.18601 1.77351 1.09861 0.40547 5 0.24411 3.79176 1.84116 3.34088 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 6 0.03307 5.52542 3.98531 4.60890 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03730 3.41092 5.62539 0.20571 1.68237 1.09861 0.40547 7 2.35931 5.29954 0.11093 5.19909 9 G = - ( 1.38629 1.38629 1.38629 1.38629 2.62966 0.07873 5.62539 1.62235 0.21994 1.09861 0.40547 8 0.23119 2.54881 2.48583 3.10158 19 A = - < 1.38629 1.38629 1.38629 1.38629 0.06215 2.87088 5.62539 0.12275 2.15833 1.09861 0.40547 9 0.35994 2.48791 2.14207 2.28485 21 A = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 10 4.00434 5.51431 0.02880 5.09498 22 G = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 11 0.17259 5.46546 1.91084 5.06290 23 A = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 12 0.07493 5.50696 2.78010 5.09886 24 A = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 13 5.27812 0.04433 5.58336 3.36676 25 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 14 4.76580 3.68322 5.28451 0.03950 26 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 15 5.23891 6.42767 0.01013 5.75918 27 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 16 5.69417 0.01218 6.00671 5.07098 28 C * - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 17 5.75663 5.35810 6.37161 0.00963 29 U * - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 18 0.00819 6.18865 5.73287 5.85491 30 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04308 3.25542 5.62539 0.17750 1.81622 1.09861 0.40547 19 0.05044 3.40493 4.90557 4.75856 32 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02236 3.98971 5.62539 0.35246 1.21387 1.09861 0.40547 20 4.56350 0.79919 5.27562 0.62592 34 U = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 21 5.22904 1.34981 5.25269 0.31455 35 U = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 22 5.60460 0.03086 5.50152 3.78873 36 C = - > 1.38629 1.38629 1.38629 1.38629 0.01799 5.62539 4.25257 1.46634 0.26236 1.09861 0.40547 23 0.85829 2.11896 2.47598 0.98919 37 a = - > 1.38629 1.38629 1.38629 1.38629 0.00731 5.61472 5.61472 1.46634 0.26236 1.78280 0.18412 24 2.26600 2.44786 2.29306 0.34413 38 U = - > 1.38629 1.38629 1.38629 1.38629 0.00731 5.61472 5.61472 1.46634 0.26236 0.40998 1.08965 25 1.80121 1.91970 0.64226 1.81924 39 G + - , 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 26 1.18614 0.71146 2.53192 2.08614 40 c + - , 1.38629 1.38629 1.38629 1.38629 2.62966 5.62539 0.07873 1.46634 0.26236 1.09861 0.40547 27 1.80312 1.30590 1.07725 1.49721 41 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 28 1.79498 1.30840 1.08029 1.49557 42 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 29 1.79134 1.30953 1.08166 1.49483 43 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 30 1.78989 1.30998 1.08222 1.49454 44 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 31 1.78948 1.31011 1.08237 1.49445 45 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 32 1.78958 1.31008 1.08233 1.49447 46 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 33 1.78991 1.30998 1.08221 1.49454 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.58330 0.07853 34 1.80496 2.02260 1.91020 0.58850 48 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05063 3.70165 3.70165 1.46634 0.26236 5.48009 0.00418 35 1.22745 1.35938 2.09962 1.11584 49 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08701 3.70165 2.83612 1.46634 0.26236 3.55547 0.02898 36 2.07722 0.66880 2.65045 1.23176 50 C + - _ 1.38629 1.38629 1.38629 1.38629 0.81072 3.80645 0.62880 1.46634 0.26236 5.46125 0.00426 37 1.13112 1.65303 1.51838 1.32128 51 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.39848 0.09525 38 1.32128 1.00597 2.16635 1.37467 52 c + - _ 1.38629 1.38629 1.38629 1.38629 0.79921 3.79494 0.63898 1.46634 0.26236 5.46343 0.00425 39 1.72169 1.22390 1.16525 1.53568 54 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 40 1.72149 1.22399 1.16533 1.53561 55 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 41 1.72156 1.22395 1.16530 1.53564 56 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 42 1.72216 1.22369 1.16508 1.53582 57 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 43 1.72378 1.22299 1.16448 1.53629 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 44 1.72726 1.22149 1.16320 1.53733 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 45 1.73418 1.21853 1.16067 1.53937 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.10607 2.29621 46 1.47926 0.98636 2.46746 1.15689 61 c + - , 1.38629 1.38629 1.38629 1.38629 1.44261 5.53488 0.27478 1.46634 0.26236 3.29597 0.03774 47 2.30444 1.10687 2.87265 0.66739 62 U + - , 1.38629 1.38629 1.38629 1.38629 0.11312 2.39912 4.12513 0.32445 1.28346 0.00920 4.69367 48 2.33252 0.58344 4.19654 1.10889 64 C + - , 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 49 3.58698 0.13644 5.12721 2.36521 65 C = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 50 2.09016 0.37199 2.43812 2.30615 66 C = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 51 0.70156 2.51184 1.23370 2.02605 67 a = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 52 1.83290 1.69335 2.24129 0.59815 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.03862 5.62539 3.37324 1.46634 0.26236 1.09861 0.40547 53 1.13625 1.74342 0.90093 2.32416 69 g = - < 1.38629 1.38629 1.38629 1.38629 0.03374 3.70955 4.74602 0.28020 1.40907 0.19090 1.74992 54 1.72178 1.04964 3.42216 0.82429 71 u + - _ 1.38629 1.38629 1.38629 1.38629 0.47228 0.98672 5.62057 0.07424 2.63730 0.61861 0.77369 55 2.17439 1.97125 4.23453 0.31122 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 56 0.55763 2.45180 3.13019 1.21205 75 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 57 0.09459 4.36566 3.63342 2.97356 76 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09939 2.44052 4.89375 0.08081 2.55584 1.09861 0.40547 58 0.31592 1.54850 4.21915 3.13251 78 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04563 5.62150 3.19452 1.46634 0.26236 0.67408 0.71258 59 0.52123 1.47307 2.84064 2.13196 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.49506 1.26159 2.23249 0.14386 2.01000 0.93988 0.49540 60 0.71176 1.66819 2.05353 1.64844 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07835 3.40803 3.16403 0.78054 0.61279 0.05594 2.91137 61 1.82217 0.92411 2.13541 1.12935 85 c = - > 1.38629 1.38629 1.38629 1.38629 0.00749 5.59131 5.59131 1.46634 0.26236 0.17755 1.81597 62 0.63755 2.35428 1.51753 1.85025 86 A = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 63 2.19073 1.33013 2.49265 0.61428 87 U = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 64 2.56866 2.75722 0.31739 2.02613 88 G = - > 1.38629 1.38629 1.38629 1.38629 0.14960 1.99992 5.62539 0.05245 2.97406 1.09861 0.40547 65 2.57086 5.22091 0.09322 4.94315 90 G = - > 1.38629 1.38629 1.38629 1.38629 0.04115 3.30468 5.62539 0.18601 1.77351 1.09861 0.40547 66 5.29309 0.10958 5.17035 2.37429 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 67 5.42124 4.03281 5.68036 0.02589 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 68 3.02961 1.61939 3.79625 0.31308 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 69 3.23722 1.96925 5.23339 0.20355 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02815 3.72356 5.62539 0.27577 1.42289 1.09861 0.40547 70 3.67153 0.49593 3.36297 1.10586 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 71 5.33258 2.85365 5.33932 0.06963 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 72 4.72423 0.38595 4.49512 1.20345 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 73 0.21899 3.75808 2.31859 2.59119 100 A + - : 1.38629 1.38629 1.38629 1.38629 2.62966 5.62539 0.07873 1.46634 0.26236 1.09861 0.40547 74 1.13112 1.65303 1.51838 1.32128 101 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 75 1.13112 1.65303 1.51838 1.32128 102 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 76 1.13112 1.65303 1.51838 1.32128 103 a + - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.04452 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Met.cm0000644000543100007160000017243312573631164021422 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Met STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:47 2015 COM [1] cmbuild --hand --enone Met_model.cm aligntRNAdb-Met.sto COM [2] cmcalibrate --seed 208 Met_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 111020317 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.3105 0.71871 ECMLC 0.54321 -9.72829 1.72420 1600000 603917 0.001987 ECMGC 0.33831 -51.02767 -36.20177 1600000 60311 0.006632 ECMLI 0.52672 -9.90198 1.84753 1600000 584664 0.002052 ECMGI 0.35761 -46.15816 -32.30504 1600000 56701 0.007055 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 16 37 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 39 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 95 - A - + MR 3 2 3 5 5 21 45 98 117 -13.126 -0.020 -6.206 -13.153 -14.045 1.950 -9.756 -2.915 -9.311 D 4 2 3 5 5 13 34 97 116 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 16 37 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 94 A U = = MP 6 5 3 10 6 22 45 97 116 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -10.080 0.418 -10.275 3.869 -12.395 -13.558 -7.857 -10.316 -9.835 -5.402 -10.504 -6.027 -7.791 -11.579 -9.689 -8.873 ML 7 5 3 10 6 16 37 94 113 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 1.882 -3.535 -3.060 -3.196 MR 8 5 3 10 6 14 35 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 32 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 36 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 93 G C = = MP 12 11 6 16 6 21 43 95 114 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -12.000 -8.617 -14.364 -6.097 -13.620 -9.777 -7.916 -13.800 -9.986 3.996 -10.177 -6.551 -8.283 -10.245 -10.367 -13.477 ML 13 11 6 16 6 16 37 92 111 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 -2.742 -4.107 1.889 -3.474 MR 14 11 6 16 6 14 35 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 31 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 36 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 36 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 92 U A = = MP 18 17 6 22 6 21 42 93 112 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -11.086 -11.352 -10.407 -7.589 -8.761 -10.555 -4.473 -9.674 -10.509 -7.566 -10.630 -9.728 3.847 0.415 -2.233 -9.311 ML 19 17 6 22 6 16 37 90 110 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 -2.593 -2.406 -3.364 1.827 MR 20 17 6 22 6 14 35 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 31 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 36 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 36 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 91 A U = = MP 24 23 6 28 6 19 40 91 110 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -11.026 -10.898 -5.983 3.993 -11.491 -11.537 -10.140 -5.805 -11.269 -7.441 -11.319 -6.288 -10.290 -11.543 -10.663 -5.987 ML 25 23 6 28 6 15 36 89 108 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 1.882 -3.535 -3.060 -3.196 MR 26 23 6 28 6 13 34 89 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 31 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 35 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 36 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 90 A G = = MP 30 29 6 34 6 17 38 89 108 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 2.346 -2.094 3.129 0.791 -12.393 -13.557 -7.855 -10.316 -9.835 -5.402 -2.731 -6.027 -7.790 -11.579 -9.688 -8.873 ML 31 29 6 34 6 15 36 88 107 -8.950 -9.297 -0.139 -3.705 -9.146 -6.676 1.882 -3.535 -3.060 -3.196 MR 32 29 6 34 6 13 33 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 31 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 35 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 35 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 89 G C = = MP 36 35 6 40 6 15 36 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 37 35 6 40 6 12 33 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 33 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 30 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 34 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 34 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 88 G C = = MP 42 41 6 46 4 13 34 85 104 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 43 41 6 46 4 11 32 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 31 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 30 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 33 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 33 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 32 83 102 -3.286 -0.156 -12.844 -8.546 -8.236 -4.191 1.978 D 49 47 6 50 3 9 30 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 32 83 102 -5.675 -0.033 -8.375 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - + - ML 51 50 3 53 2 10 31 82 101 -14.843 -0.000 -0.941 1.797 -9.312 -8.279 D 52 50 3 53 2 9 30 81 100 -8.445 -0.004 IL 53 53 3 53 2 10 31 83 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 30 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 27 A U = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -2.224 3.816 -12.426 -13.585 -7.885 -10.336 -9.854 0.735 -10.524 -6.046 -7.814 -11.599 -9.717 -8.892 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 G C = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.915 -8.703 -13.434 -6.149 -12.323 -9.842 0.691 -12.840 -10.027 3.843 -10.220 -6.633 -7.906 -10.302 -9.586 -12.404 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 C G = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.828 -9.692 -10.530 -7.600 -10.650 -9.795 0.733 -10.943 -3.107 -9.332 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 U A = = MP 76 75 6 80 4 2 3 17 36 -13.280 -13.487 -0.001 -11.901 0.714 -10.781 -10.413 -7.048 -8.918 -10.705 -4.628 -9.746 -10.446 -7.159 -10.637 -8.618 3.836 -10.998 -6.617 -9.281 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 15 33 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.190 -1.513 -0.622 1.999 -10.184 -9.419 -9.524 D 86 84 3 87 3 0 0 16 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 14 32 -12.678 -1.105 -0.903 0.013 -1.719 -5.901 1.417 D 89 87 3 90 3 0 0 12 30 -14.989 -10.502 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 13 31 -11.575 -4.678 -0.058 -1.759 -1.515 -5.139 1.734 D 92 90 3 93 3 0 0 12 30 -15.354 -0.435 -1.942 IL 93 93 3 93 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 12 30 -13.515 -0.000 -12.169 1.804 -7.386 -1.208 -3.865 D 95 93 3 96 3 0 0 10 29 -14.195 -1.849 -0.469 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - U - + - ML 97 96 3 99 3 1 1 10 29 -13.736 -2.935 -0.202 -3.599 -0.604 -7.283 1.702 D 98 96 3 99 3 0 0 9 28 -13.728 -9.241 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 8 15 -2.659 -0.251 -9.458 -4.360 -0.632 -5.117 1.713 D 101 99 3 102 3 0 0 6 13 -6.363 -0.019 -9.858 IL 102 102 3 102 3 1 1 7 14 -3.910 -0.115 -6.610 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 28 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 28 46 -3.288 -0.156 -12.941 -13.153 -14.045 1.846 -8.808 -9.124 -1.316 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -6.714 -0.021 -8.393 -10.225 -9.498 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -0.827 -9.693 -10.530 -7.599 -10.650 -9.794 3.941 -10.943 -4.109 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 C G = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.946 -9.692 -10.530 -7.600 -10.650 -9.795 -2.429 -10.943 -1.407 -9.332 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.022 -2.842 -14.402 -6.117 -13.648 -9.795 -7.938 -13.834 -10.005 3.984 -10.196 -6.570 -8.304 -10.264 -10.391 -13.523 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -10.276 1.999 -10.915 -8.979 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 4 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 3 49 68 -14.190 -0.000 -12.844 1.986 -10.052 -4.805 -9.462 D 167 165 2 168 3 0 1 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - + - ML 169 168 3 171 2 1 2 48 67 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 170 168 3 171 2 0 1 47 66 -8.445 -0.004 IL 171 171 3 171 2 1 2 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 28 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 2 28 47 -14.190 -0.000 -12.844 1.987 -10.057 -4.868 -9.464 D 232 230 2 233 3 0 0 30 49 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - U - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -4.920 -3.449 -7.881 1.953 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 87 G C = = MP 237 236 3 241 6 2 2 26 45 -14.078 -6.073 -0.022 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 25 44 -4.320 -0.116 -7.831 -5.999 -7.105 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 85 U U = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.297 -9.106 -10.327 -5.415 -10.447 -12.097 -6.108 -10.143 -9.999 -5.740 -10.555 -2.731 0.406 -11.401 -8.062 3.854 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 84 U U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.099 -11.341 -10.426 -2.183 -8.786 -2.550 -4.498 -0.770 -10.525 -7.566 -10.649 -9.679 0.127 -0.962 -1.635 3.705 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 83 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.982 -8.637 -14.177 -6.101 -13.619 -9.809 -7.934 -13.685 0.367 3.875 -10.199 -6.564 -8.296 -10.273 -10.378 -13.205 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 82 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.065 -4.503 -11.948 -8.638 -14.016 -6.088 -13.613 -9.821 -7.937 -13.578 -10.002 3.905 -10.202 -0.008 -8.293 -10.280 -10.375 -12.988 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - U - + - ML 267 266 6 269 3 1 1 15 34 -14.126 -0.000 -12.780 -2.266 -3.574 -5.137 1.880 D 268 266 6 269 3 0 0 15 34 -11.142 -0.032 -5.534 IL 269 269 3 269 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.033 -5.487 -4.554 -3.125 -7.827 1.941 D 271 269 3 272 3 0 0 17 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - U - + - ML 273 272 3 275 3 1 1 13 31 -14.158 -0.096 -3.959 -0.388 -0.018 -7.411 1.165 D 274 272 3 275 3 0 0 13 32 -10.204 -2.887 -0.211 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - A - + - ML 276 275 3 278 3 1 1 12 30 -5.911 -0.024 -12.721 1.814 -4.208 -3.734 -1.496 D 277 275 3 278 3 0 0 10 29 -12.029 -7.542 -0.008 IL 278 278 3 278 3 1 1 12 30 -3.306 -0.179 -6.006 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - U - + - ML 279 278 3 281 3 1 1 10 29 -14.067 -0.000 -12.721 -0.447 -0.105 -7.343 1.220 D 280 278 3 281 3 0 0 10 29 -12.029 -7.542 -0.008 IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - A - + - ML 282 281 3 284 3 1 1 9 27 -14.067 -0.150 -3.345 1.656 -0.729 -7.296 -2.066 D 283 281 3 284 3 0 0 9 28 -12.029 -7.542 -0.008 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 81 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -9.574 1.208 -10.737 0.756 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Met LENG 90 MAXL 180 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:47 2015 COM [1] cmbuild --hand --enone Met_model.cm aligntRNAdb-Met.sto NSEQ 282 EFFN 2.654938 CKSUM 111020317 STATS LOCAL MSV -9.5813 0.71871 STATS LOCAL VITERBI -9.8633 0.71871 STATS LOCAL FORWARD -3.5462 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32657 1.31565 1.46726 1.44495 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 0.00000 * 1 0.42557 2.69682 1.61387 2.52492 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 2 2.65155 3.35684 0.15387 3.29058 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 3 2.59059 1.98116 2.36899 0.36595 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 4 0.29251 2.93155 1.94645 2.85571 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 5 1.07073 1.62332 1.53836 1.40540 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 6 2.67651 3.38344 0.14953 3.32008 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 7 2.67671 3.38369 0.14949 3.32042 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 8 2.35256 2.38322 2.77034 0.28771 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.10317 2.53779 3.96424 0.42616 1.05846 1.09861 0.40547 9 1.82513 0.47127 2.75073 1.89240 10 C + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 10 0.58827 2.44990 1.34299 2.32944 11 A = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 11 2.23984 2.22932 0.35097 2.50206 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 12 2.86456 0.42439 2.62751 1.52987 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 13 2.07287 1.73318 2.08358 0.55692 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 14 0.13237 3.38532 3.09529 3.10437 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 15 0.13237 3.38532 3.09529 3.10437 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.54244 3.96424 0.91706 1.46634 0.26236 1.09861 0.40547 16 1.30831 1.70534 1.99975 0.88517 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.27270 3.48506 1.57009 1.46634 0.26236 3.13792 0.04434 17 1.41325 1.63383 1.92021 0.87974 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.29407 3.28981 1.52547 1.46634 0.26236 0.35926 1.19798 18 0.46812 2.39115 1.91497 2.00284 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04984 3.71693 3.71693 1.46634 0.26236 1.24161 0.34097 19 1.87653 1.66829 2.42007 0.56318 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.66731 3.79187 0.76710 1.46634 0.26236 2.13625 0.12567 20 1.41319 1.54577 1.86808 0.94400 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10346 2.83994 3.22244 1.05649 0.42721 0.06761 2.72756 21 0.13237 3.38532 3.09529 3.10437 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 22 0.57949 2.25872 1.55870 2.08006 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 23 1.75028 2.78719 0.36847 2.61879 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 24 2.73880 0.39821 2.09668 1.95921 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 25 2.54720 1.51973 2.21288 0.52165 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 26 0.34095 2.58460 2.54926 1.99995 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.10317 2.53779 3.96424 0.42616 1.05846 1.09861 0.40547 27 2.91643 1.66897 2.68037 0.37267 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 28 3.14761 0.27763 2.93165 1.92305 31 C = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 29 2.55864 3.34871 0.16409 3.24948 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 30 2.67926 3.38690 0.14897 3.32484 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 31 2.67898 3.38655 0.14903 3.32435 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 32 3.02333 0.16900 3.59906 2.53200 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 33 3.02333 0.16900 3.59906 2.53200 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 34 3.02333 0.16900 3.59906 2.53200 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 35 0.13237 3.38532 3.09529 3.10437 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 36 2.74779 2.68851 3.27039 0.18638 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 37 0.13237 3.38532 3.09529 3.10437 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 38 3.02333 0.16900 3.59906 2.53200 41 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 39 3.52069 0.17708 3.22481 2.37576 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 40 3.52306 0.17689 3.22589 2.37621 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 41 3.45467 0.19112 3.18437 2.29299 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 42 2.25717 3.09475 0.22836 2.91456 45 G = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 43 0.42507 2.85463 1.51265 2.68277 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 44 0.15509 3.26562 2.89832 2.98831 47 A + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 45 0.13237 3.38532 3.09529 3.10437 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.96851 3.96424 0.50855 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 47 1.80347 1.30579 1.07712 1.49728 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 48 1.80137 1.30643 1.07790 1.49685 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 49 1.80048 1.30671 1.07823 1.49668 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 50 1.80018 1.30680 1.07834 1.49662 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 51 1.80017 1.30680 1.07835 1.49661 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 52 1.80028 1.30677 1.07830 1.49664 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 53 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 54 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 55 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 57 1.73147 1.21969 1.16166 1.53857 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 58 1.73131 1.21975 1.16172 1.53852 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 59 1.73122 1.21979 1.16175 1.53850 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 60 1.73124 1.21978 1.16174 1.53850 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 61 1.73149 1.21968 1.16165 1.53858 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 62 1.73214 1.21940 1.16142 1.53877 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.06122 2.82376 64 0.15420 3.26999 2.90502 2.99280 67 A + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 65 2.38841 2.32612 2.92883 0.27827 68 U + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 66 2.68526 3.39447 0.14777 3.33526 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 67 2.28836 1.89783 1.98859 0.49137 70 U = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 68 1.69883 1.52559 1.57930 0.93270 71 u = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 69 2.31317 2.85199 0.24945 2.74743 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 70 2.46970 3.23713 0.18388 3.12180 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.06575 3.96424 3.10885 1.46634 0.26236 1.09861 0.40547 71 1.98574 2.14097 2.57950 0.40142 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93824 3.93824 1.46634 0.26236 0.61531 0.77755 72 2.33074 2.26896 2.87661 0.29702 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05230 3.96424 3.44277 1.46634 0.26236 1.09861 0.40547 73 1.45222 1.47495 2.24915 0.84009 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07875 3.95116 2.87360 1.46634 0.26236 1.22285 0.34869 74 0.42701 2.36066 2.29172 1.88327 77 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05050 3.53003 3.91488 1.05439 0.42833 1.71151 0.19917 75 1.46462 1.50322 2.24016 0.82103 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04070 3.91488 3.91488 1.46634 0.26236 1.71151 0.19917 76 0.57931 1.84820 2.25756 1.72828 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.10031 3.91488 2.58365 1.46634 0.26236 1.71151 0.19917 77 1.94508 0.92049 2.49869 0.97682 81 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04315 3.85772 3.85772 1.46634 0.26236 0.27483 1.42588 78 3.33033 0.24124 3.06393 2.02601 82 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 79 2.61264 0.31945 2.67340 2.03183 83 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 80 1.55834 1.70315 1.34725 1.05713 84 u = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 81 1.92833 2.26494 1.72572 0.55734 85 U = - > 1.38629 1.38629 1.38629 1.38629 0.04794 3.58189 3.96424 1.05663 0.42714 1.09861 0.40547 82 3.53062 0.17631 3.22932 2.37763 87 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 83 3.51395 0.17761 3.22174 2.37449 88 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 84 3.51522 0.17751 3.22232 2.37473 89 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04693 3.96424 3.61689 1.46634 0.26236 1.09861 0.40547 85 1.40380 1.69948 1.11383 1.41361 90 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 86 3.08202 2.25630 2.74305 0.24204 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 87 0.43363 2.36360 1.79459 2.39066 92 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 88 3.51244 0.17900 3.21145 2.36685 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 89 2.76601 1.67439 2.51291 0.40252 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 0.88092 0.53512 90 0.20524 3.05991 2.57595 2.77139 95 A + - : 1.38629 1.38629 1.38629 1.38629 0.01954 3.94508 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNA2ns.cm0000644000543100007160000016025311021467311016376 0ustar pchanlowelab### cove V2 91 nodes ### node 0 type 6 1 -1 0.00352 0.00000 0.80973 0.00000 0.02326 0.16350 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02778 0.00000 0.50000 0.00000 0.02778 0.44444 0.00274 0.00000 0.33653 0.00000 0.00000 0.66074 0.05556 0.02778 0.86111 0.05556 # INSL 0.33060 0.66530 0.00137 0.00273 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 2 2 -1 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99858 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15842 0.08557 0.66266 0.09335 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 2 type 2 3 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.12262 0.33404 0.41860 0.12474 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 3 type 2 4 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17407 0.28189 0.35800 0.18605 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 4 type 2 5 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.99718 0.00000 0.00141 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.40000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19944 0.21917 0.35236 0.22903 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 5 type 2 6 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29196 0.24260 0.25599 0.20945 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 6 type 2 7 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99788 0.00000 0.00141 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.40000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19944 0.20719 0.22481 0.36857 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 7 type 2 8 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00212 0.00000 0.99718 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.36505 0.02889 0.39464 0.21142 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 8 type 2 9 -1 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00636 0.00000 0.98799 0.00000 0.00565 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09091 0.09091 0.63636 0.18182 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04799 0.00423 0.01764 0.93013 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 9 type 2 10 -1 0.09091 0.00000 0.81818 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99220 0.00000 0.00709 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.38462 0.30769 0.15385 0.15385 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.64352 0.03402 0.30191 0.02055 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 10 type 2 11 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07541 0.03735 0.85906 0.02819 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 2 12 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03101 0.59972 0.05567 0.31360 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 2 13 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09937 0.20085 0.16984 0.52995 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 2 14 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00353 0.00000 0.99577 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.14235 0.35870 0.16279 0.33615 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 14 type 2 15 -1 0.71429 0.00000 0.14286 0.00000 0.14286 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00707 0.00000 0.99222 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.94770 0.00495 0.01979 0.02756 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 15 type 2 16 -1 0.87500 0.00000 0.06250 0.00000 0.06250 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11886 0.00000 0.88043 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.35562 0.01991 0.56899 0.05548 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 16 type 2 17 -1 0.98901 0.00000 0.00549 0.00000 0.00549 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.55609 0.00000 0.44310 0.00000 0.00081 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10887 0.21290 0.03871 0.63952 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 17 type 2 18 -1 0.06552 0.00000 0.93333 0.00000 0.00115 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00544 0.00000 0.75318 0.00000 0.24138 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00725 0.00000 0.96377 0.00000 0.02899 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09353 0.25180 0.02158 0.63309 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07790 0.23551 0.01630 0.67029 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 18 type 2 19 -1 0.96721 0.00000 0.01639 0.00000 0.01639 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00074 0.00000 0.99853 0.00000 0.00074 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09111 0.03086 0.83248 0.04555 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 19 type 2 20 -1 0.96721 0.00000 0.01639 0.00000 0.01639 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.13750 0.00000 0.86176 0.00000 0.00074 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05217 0.03527 0.83174 0.08082 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 20 type 2 21 -1 0.01215 0.00000 0.96761 0.00000 0.02024 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00341 0.00000 0.50681 0.00000 0.48978 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00789 0.00000 0.75526 0.00000 0.23684 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16689 0.16032 0.06965 0.60315 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09702 0.10298 0.04426 0.75574 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99858 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.87722 0.01490 0.06388 0.04400 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.41720 0.01903 0.45877 0.10500 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.52572 0.17054 0.20860 0.09514 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 25 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29457 0.05708 0.61663 0.03171 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 2 26 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00212 0.00000 0.99718 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02748 0.73502 0.04228 0.19521 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99435 0.00000 0.00494 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11111 0.00000 0.77778 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.45730 0.03529 0.41637 0.09104 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 2 28 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99788 0.00000 0.00141 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.40000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15927 0.34602 0.13178 0.36293 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 2 29 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16209 0.35588 0.10641 0.37562 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 2 30 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.99788 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.24806 0.14094 0.37068 0.24031 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 30 type 2 31 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09520 0.21227 0.65938 0.03315 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 31 type 2 32 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.35518 0.25300 0.21424 0.17759 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 32 type 2 33 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99718 0.00000 0.00212 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.50000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02114 0.60395 0.00634 0.36857 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 33 type 2 34 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00070 0.02607 0.00070 0.97252 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05144 0.18323 0.33756 0.42777 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.30444 0.19662 0.20789 0.29105 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25793 0.24172 0.20648 0.29387 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.97179 0.00000 0.02750 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.05485 0.00000 0.94374 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.31180 0.18680 0.21910 0.28230 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.78365 0.00141 0.21071 0.00423 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.67935 0.17970 0.02467 0.11628 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.12333 0.20789 0.29810 0.37068 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 41 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01762 0.60465 0.22058 0.15715 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 2 42 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23749 0.37209 0.14165 0.24877 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00212 0.00000 0.99577 0.00000 0.00212 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.50000 0.16667 0.16667 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.33263 0.08598 0.38337 0.19803 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 44 -1 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.32816 0.07904 0.35992 0.23289 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 2 45 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.14104 0.00000 0.85825 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.48273 0.13531 0.12333 0.25863 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 2 46 -1 0.00990 0.00000 0.98515 0.00000 0.00495 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.97867 0.00000 0.01887 0.00000 0.00246 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.50000 0.16667 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.28033 0.02787 0.52295 0.16885 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 2 47 -1 0.99833 0.00000 0.00084 0.00000 0.00084 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.04000 0.00000 0.95556 0.00000 0.00444 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15487 0.10619 0.62832 0.11062 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 47 type 2 48 -1 0.99834 0.00000 0.00083 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03687 0.00000 0.95853 0.00000 0.00461 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.14220 0.26147 0.28440 0.31193 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 48 type 2 49 -1 0.99835 0.00000 0.00083 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.30952 0.00000 0.67619 0.00000 0.01429 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.33333 0.16667 0.33333 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23697 0.36967 0.18009 0.21327 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 49 type 2 50 -1 0.99843 0.00000 0.00078 0.00000 0.00078 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.46575 0.00000 0.52740 0.00000 0.00685 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08844 0.38095 0.23129 0.29932 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 50 type 2 51 -1 0.99851 0.00000 0.00075 0.00000 0.00075 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.32911 0.00000 0.65823 0.00000 0.01266 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.10000 0.30000 0.35000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 51 type 2 52 -1 0.99854 0.00000 0.00073 0.00000 0.00073 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.62963 0.00000 0.35185 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29091 0.20000 0.23636 0.27273 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 52 type 2 53 -1 0.85857 0.00000 0.14071 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.04762 0.00000 0.90476 0.00000 0.04762 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04545 0.31818 0.13636 0.50000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 53 type 2 54 -1 0.99834 0.00000 0.00083 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00922 0.00000 0.98618 0.00000 0.00461 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21101 0.09174 0.24312 0.45413 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 2 55 -1 0.99834 0.00000 0.00083 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06019 0.00000 0.93519 0.00000 0.00463 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.27650 0.16590 0.05530 0.50230 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 55 type 2 56 -1 0.99836 0.00000 0.00082 0.00000 0.00082 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.37745 0.00000 0.60294 0.00000 0.01961 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.50000 0.00000 0.37500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.44444 0.11111 0.11111 0.33333 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.45854 0.09756 0.04878 0.39512 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 56 type 2 57 -1 0.99227 0.00000 0.00696 0.00000 0.00077 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.69531 0.00000 0.01562 0.00000 0.28906 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.71795 0.00000 0.25641 0.00000 0.02564 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.52500 0.07500 0.12500 0.27500 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.36434 0.11628 0.27132 0.24806 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 2 58 -1 0.97500 0.00000 0.02429 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.04762 0.00000 0.90476 0.00000 0.04762 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.36364 0.04545 0.45455 0.13636 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.98025 0.00000 0.01902 0.00000 0.00073 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03704 0.00000 0.94444 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.14545 0.14545 0.38182 0.32727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.94862 0.00000 0.05063 0.00000 0.00074 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01282 0.00000 0.97436 0.00000 0.01282 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29114 0.20253 0.15190 0.35443 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 2 61 -1 0.94828 0.00000 0.05094 0.00000 0.00078 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00690 0.00000 0.97241 0.00000 0.02069 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.50000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.22603 0.19863 0.43836 0.13699 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 61 type 2 62 -1 0.99257 0.00000 0.00660 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00478 0.00000 0.99043 0.00000 0.00478 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19048 0.16190 0.38571 0.26190 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 62 type 2 63 -1 0.99834 0.00000 0.00083 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00463 0.00000 0.99074 0.00000 0.00463 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.30876 0.26267 0.26267 0.16590 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 63 type 2 64 -1 0.00747 0.00000 0.99170 0.00000 0.00083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.28241 0.00000 0.71296 0.00000 0.00463 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07834 0.58065 0.14286 0.19816 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 64 type 2 65 -1 0.01408 0.00000 0.95775 0.00000 0.02817 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00148 0.00000 0.45259 0.00000 0.54593 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00133 0.00000 0.98400 0.00000 0.01467 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06525 0.07989 0.05060 0.80426 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.31384 0.02147 0.53442 0.13027 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 65 type 2 66 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05642 0.57546 0.02186 0.34626 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 66 type 2 67 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.28259 0.15574 0.49331 0.06836 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 67 type 2 68 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17548 0.32699 0.20296 0.29457 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00494 0.00000 0.99013 0.00000 0.00494 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11111 0.00000 0.77778 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.10000 0.10000 0.40000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.28823 0.14306 0.39605 0.17266 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.77778 0.00000 0.11111 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.04462 0.00000 0.95467 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17693 0.01982 0.75584 0.04742 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.36620 0.00000 0.61972 0.00000 0.01408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02519 0.00000 0.97407 0.00000 0.00074 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05403 0.01776 0.91118 0.01702 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 72 -1 0.04918 0.00000 0.93443 0.00000 0.01639 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00147 0.00000 0.99706 0.00000 0.00147 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05878 0.03159 0.01323 0.89640 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 72 type 2 73 -1 0.16667 0.00000 0.66667 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.99788 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03955 0.02401 0.04802 0.88842 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 73 type 2 74 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.99788 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10085 0.80889 0.01763 0.07264 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 74 type 2 75 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00635 0.00000 0.98941 0.00000 0.00423 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.22222 0.44444 0.22222 0.11111 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.42666 0.02962 0.50000 0.04372 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 75 type 2 76 -1 0.81818 0.00000 0.09091 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03404 0.00000 0.96525 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.91850 0.02268 0.01701 0.04181 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 76 type 2 77 -1 0.93103 0.00000 0.05172 0.00000 0.01724 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06310 0.00000 0.92517 0.00000 0.01174 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.05000 0.00000 0.80000 0.00000 0.15000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.42857 0.23810 0.14286 0.19048 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.46114 0.08284 0.21334 0.24267 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 77 type 2 78 -1 0.37589 0.00000 0.61702 0.00000 0.00709 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01328 0.00000 0.98594 0.00000 0.00078 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05308 0.13973 0.01015 0.79703 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 78 type 2 79 -1 0.09859 0.00000 0.88732 0.00000 0.01408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00074 0.00000 0.99852 0.00000 0.00074 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01999 0.91710 0.00740 0.05551 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 79 type 2 80 -1 0.11111 0.00000 0.77778 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99788 0.00000 0.00142 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.40000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04317 0.75442 0.02194 0.18047 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 80 type 2 81 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.14235 0.37703 0.16561 0.31501 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 81 type 2 82 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99506 0.00000 0.00423 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11111 0.66667 0.11111 0.11111 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.24665 0.15645 0.35659 0.24031 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 82 type 2 83 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00141 0.00000 0.99506 0.00000 0.00353 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.14286 0.00000 0.71429 0.00000 0.14286 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.37500 0.12500 0.37500 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05567 0.37773 0.16843 0.39817 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 83 type 2 84 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20945 0.35755 0.02962 0.40339 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 84 type 2 85 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.28964 0.19873 0.26004 0.25159 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 85 type 2 86 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16913 0.21564 0.27907 0.33615 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 86 type 2 87 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19309 0.30655 0.25863 0.24172 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 87 type 2 88 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17477 0.30514 0.29246 0.22763 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 88 type 2 89 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00071 0.00000 0.99859 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11910 0.37984 0.33686 0.16420 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 89 type 2 90 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00846 0.00000 0.99013 0.00000 0.00141 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.40000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09514 0.58280 0.07893 0.24313 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 90 type 2 -1 -1 0.92308 0.00000 0.00000 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99929 0.00000 0.00000 0.00000 0.00071 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.56676 0.06605 0.22443 0.14276 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Met.cm0000644000543100007160000017246412573631650021142 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Met-2nd-align STATES 289 NODES 76 CLEN 90 W 110 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Met-final-vert.cm ../Met-2nd-align.sto COM [2] cmcalibrate --seed 208 Met-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1094 EFFN 1094.000000 CKSUM 278576376 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.5042 0.71865 ECMLC 0.69163 -6.43250 2.40402 1600000 541261 0.002217 ECMGC 0.31201 -48.07776 -32.99691 1600000 44216 0.009046 ECMLI 0.68561 -5.99506 2.81063 1600000 502506 0.002388 ECMGI 0.31666 -44.45879 -29.69338 1600000 42921 0.009319 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 110 161 -15.024 -16.269 -0.000 -12.723 IL 1 1 2 1 4 19 40 111 163 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 41 112 163 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 103 - A - + MR 3 2 3 5 5 25 47 110 162 -15.072 -0.010 -7.196 -15.100 -15.992 1.935 -10.880 -3.039 -4.191 D 4 2 3 5 5 16 36 108 160 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 19 40 110 162 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 102 A U = = MP 6 5 3 10 6 26 47 109 161 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -1.399 -3.097 -12.233 3.750 -2.081 -15.524 -9.830 -12.276 -11.794 0.488 -12.464 -3.052 -1.804 -13.537 -11.661 -10.832 ML 7 5 3 10 6 20 41 106 158 -9.801 -10.147 -4.861 -0.063 -9.997 -7.526 1.950 -4.766 -4.223 -4.483 MR 8 5 3 10 6 18 38 107 158 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 34 103 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 39 109 160 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 39 108 160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 101 G C = = MP 12 11 6 16 6 26 45 107 159 -15.997 -15.936 -0.101 -3.888 -14.992 -15.387 -9.972 -6.388 -9.790 0.140 -0.859 -10.384 -1.340 -10.480 -10.227 3.655 -10.473 -1.493 -0.166 -3.627 -7.995 -8.756 ML 13 11 6 16 6 20 41 105 157 -9.801 -10.147 -4.861 -0.063 -9.997 -7.526 -3.837 -5.313 1.950 -4.573 MR 14 11 6 16 6 18 37 105 156 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 33 102 153 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 39 107 158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 39 106 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 100 U A = = MP 18 17 6 22 6 25 43 105 157 -15.896 -15.835 -0.000 -14.612 -14.891 -15.286 -12.869 -1.933 -12.221 -9.302 -3.711 -3.126 0.288 -11.496 -12.314 -1.990 -12.450 -11.413 3.599 -4.094 0.925 -11.112 ML 19 17 6 22 6 22 41 104 155 -13.134 -13.480 -0.145 -3.396 -13.330 -10.860 -7.220 1.860 -7.722 -1.481 MR 20 17 6 22 6 18 37 103 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 33 100 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 38 105 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 38 104 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 99 A U = = MP 24 23 6 28 6 24 41 103 155 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -11.976 -1.295 -12.073 3.675 0.365 -4.547 -8.656 -6.227 -11.764 0.152 -12.357 -6.228 -3.930 -4.495 -2.097 -10.738 ML 25 23 6 28 6 19 38 101 153 -9.801 -10.147 -4.861 -0.063 -9.997 -7.526 1.950 -4.766 -4.223 -4.483 MR 26 23 6 28 6 17 36 101 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 33 98 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 38 103 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 38 102 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 98 a u = = MP 30 29 6 34 6 22 39 101 153 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 0.097 0.596 0.659 2.748 -10.917 -6.050 -5.984 -2.528 -10.224 1.705 -5.521 -3.760 0.385 -4.795 -7.992 -2.216 ML 31 29 6 34 6 19 38 100 152 -9.801 -10.147 -0.075 -4.556 -9.997 -7.526 1.950 -4.766 -4.223 -4.483 MR 32 29 6 34 6 17 35 99 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 32 96 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 37 101 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 100 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 97 g c = = MP 36 35 6 40 6 20 37 99 151 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -9.975 -1.077 -5.260 2.664 -2.761 -4.943 -3.245 -10.484 -10.232 2.696 -10.478 1.185 -3.416 -5.487 -7.998 -8.759 ML 37 35 6 40 6 17 35 98 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 34 98 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 32 95 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 36 99 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 99 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 96 G C = = MP 42 41 6 46 4 18 35 97 149 -15.229 -15.436 -0.000 -13.851 -13.442 -4.353 -14.537 1.063 -15.315 -11.945 -9.862 -14.405 -11.912 3.781 -12.172 -3.102 -10.149 -12.333 -12.198 -13.247 ML 43 41 6 46 4 16 34 97 148 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 15 33 96 147 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 32 95 146 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 34 98 149 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 34 97 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 16 33 95 147 -16.139 -0.000 -14.793 -9.128 -3.509 -4.952 1.955 D 49 47 6 50 3 14 31 94 145 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 33 96 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - C - + - ML 51 50 3 53 2 15 32 94 146 -16.794 -0.000 -0.227 1.653 -12.378 -10.762 D 52 50 3 53 2 14 31 93 145 -8.445 -0.004 IL 53 53 3 53 2 15 32 95 146 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 14 31 93 145 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 41 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 41 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 22 41 -0.000 -14.134 -13.541 -14.181 [ MATP 15 ] 10 27 A U = = MP 58 57 1 62 6 2 3 22 41 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -5.330 -10.699 -3.533 3.754 -14.340 -4.717 -9.789 -2.220 -11.798 0.663 -12.464 -4.157 -0.993 -13.504 -11.626 -10.832 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 G C = = MP 64 63 6 68 6 2 3 20 39 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.898 -10.610 -15.677 -8.077 -14.540 -11.748 0.651 -15.053 -11.950 3.850 -12.139 -8.546 -9.944 -12.213 -11.713 -14.703 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 C G = = MP 70 69 6 74 6 2 3 18 37 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.059 -13.341 -12.376 -9.577 -10.726 -12.520 3.815 -11.642 -12.480 -9.549 -3.611 -11.745 0.663 -12.893 -1.981 -11.281 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 3 16 35 -15.229 -15.436 -0.000 -13.851 -13.059 -13.340 -1.744 -9.577 -4.054 -12.520 -2.022 -11.642 -12.480 -9.549 -12.600 -11.744 3.944 -12.893 -8.429 -11.281 ML 77 75 6 80 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 14 32 -16.139 -0.000 -14.793 1.868 -6.024 -6.080 -1.643 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 13 31 -16.139 -1.037 -0.964 1.947 -3.013 -5.690 -10.474 D 86 84 3 87 3 0 0 17 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 12 30 -15.102 -0.409 -2.018 -1.071 0.194 -8.472 1.249 D 89 87 3 90 3 0 0 11 29 -16.595 -12.108 -0.000 IL 90 90 3 90 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 11 29 -4.848 -7.371 -0.060 -0.795 -0.770 -8.167 1.503 D 92 90 3 93 3 0 0 11 29 -16.899 -0.220 -2.824 IL 93 93 3 93 3 1 1 12 30 -4.696 -0.066 -7.396 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 2 11 29 -15.299 -0.000 -13.953 1.784 -9.050 -1.516 -2.284 D 95 93 3 96 3 0 0 9 28 -16.379 -1.424 -0.673 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - U - + - ML 97 96 3 99 3 1 1 9 28 -15.672 -1.654 -0.552 -0.618 -0.808 -1.622 1.294 D 98 96 3 99 3 0 0 8 27 -15.706 -11.219 -0.001 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 5 9 -1.182 -0.839 -12.672 -8.766 -1.299 -9.567 1.844 D 101 99 3 102 3 0 0 2 6 -17.182 -0.000 -11.573 IL 102 102 3 102 3 1 1 5 8 -7.549 -0.009 -10.249 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.991 -12.028 -11.334 -5.309 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.139 -0.000 -14.793 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - u - + - ML 109 108 2 111 5 1 1 26 45 -5.328 -0.036 -14.888 -15.100 -15.992 0.276 -0.835 -1.349 0.877 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 44 -6.625 -0.023 -8.304 -10.136 -9.410 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 47 U A = = MP 112 111 3 116 6 2 2 25 43 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.059 -13.341 -12.376 -9.577 -4.645 -12.520 -0.321 -11.642 -12.480 -9.549 -12.600 -11.745 3.792 -12.893 0.282 -3.462 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 46 C G = = MP 118 117 6 122 6 2 2 23 41 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.050 -13.328 -0.612 -9.560 -4.589 -12.518 3.021 -6.295 -12.474 -9.528 -12.596 -11.721 2.582 -3.872 -0.030 -2.906 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 45 G C = = MP 124 123 6 128 6 2 2 21 39 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.645 -6.525 -15.083 -0.621 -15.425 -11.842 -9.864 -14.859 -11.921 3.878 -12.151 -0.655 -10.185 -12.268 -12.250 -13.861 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 44 G C = = MP 130 129 6 134 6 2 2 19 37 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.940 -10.563 -16.273 -8.040 -15.571 -11.726 -9.866 -15.725 -11.932 3.968 -12.124 -1.527 -10.230 -12.193 -12.317 -15.369 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 43 G C = = MP 136 135 6 140 4 2 2 17 35 -15.229 -15.436 -0.000 -13.851 -13.960 -10.564 -16.371 -8.049 -15.528 -11.719 0.348 -15.773 -11.934 3.862 -12.123 -3.210 -10.222 -3.792 -12.294 -15.520 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 142 141 6 144 3 1 1 14 32 -16.139 -0.000 -14.793 -11.650 1.916 -12.132 -2.146 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - + - ML 145 144 3 147 3 1 1 13 31 -16.139 -0.000 -14.793 -11.928 1.833 -12.492 -1.195 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - * - ML 148 147 3 150 3 1 1 11 30 -16.139 -0.000 -14.793 -11.764 1.879 -12.277 -1.644 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.139 -0.000 -14.793 2.000 -12.077 -11.323 -11.410 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 8 27 -16.139 -0.000 -14.793 -13.425 -12.044 -15.003 2.000 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.220 -0.020 -14.793 1.932 -11.688 -2.445 -11.258 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 6 12 -4.762 -0.063 -7.462 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -6.035 1.851 -1.653 -4.070 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 7 62 113 -16.139 -0.000 -14.793 IL 165 165 2 165 3 1 7 63 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 7 62 113 -16.139 -0.000 -14.793 1.750 -1.323 -2.625 -3.732 D 167 165 2 168 3 0 5 60 111 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 62 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 6 61 112 -16.794 -0.000 1.258 0.336 -3.493 -1.960 D 170 168 3 171 2 0 5 60 111 -8.445 -0.004 IL 171 171 3 171 2 1 6 61 112 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 5 60 111 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.830 -14.134 -13.541 -0.007 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.443 -15.124 -13.140 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.556 -13.069 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.556 -13.069 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.556 -13.069 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 5 56 107 -16.139 -0.000 -14.793 IL 230 230 2 230 3 1 1 58 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - A - + - ML 231 230 2 233 3 1 5 56 107 -3.676 -0.118 -14.793 1.991 -12.035 -5.323 -11.399 D 232 230 2 233 3 0 0 54 105 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 3 56 107 -7.183 -0.011 -9.883 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - U - + - ML 234 233 3 236 5 1 4 55 106 -15.072 -0.018 -14.888 -6.317 -15.992 -5.729 -2.038 -9.873 1.902 D 235 233 3 236 5 0 0 53 104 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 55 106 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 95 G C = = MP 237 236 3 241 6 2 5 54 105 -15.988 -5.586 -0.031 -14.704 -14.984 -15.379 -13.926 -10.545 -16.282 -8.024 -15.555 -11.706 -9.848 -15.724 -11.914 3.981 -12.106 -2.296 -10.213 -12.174 -12.300 -15.389 ML 238 236 3 241 6 1 1 52 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 48 99 -11.172 -9.901 -5.810 -9.879 -0.035 -8.093 -5.309 1.967 -5.801 -4.409 D 240 236 3 241 6 0 0 48 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 53 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 53 104 -6.372 -0.027 -9.883 -8.051 -9.157 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 93 U U = = MP 243 242 6 247 6 2 4 52 103 -15.988 -15.928 -0.000 -14.704 -14.984 -15.379 -11.371 -11.005 -11.203 1.667 -4.605 -11.815 -0.860 -10.721 -11.161 0.775 -11.554 -6.598 -1.021 -2.473 -0.060 3.150 ML 244 242 6 247 6 1 1 50 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 46 98 -11.172 -9.901 -5.810 -9.879 -0.035 -8.093 -5.309 1.967 -5.801 -4.409 D 246 242 6 247 6 0 0 46 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 51 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 51 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 92 u u = = MP 249 248 6 253 6 2 2 50 101 -15.988 -5.383 -0.063 -14.704 -14.984 -5.767 -5.992 -0.820 -9.488 0.341 -3.926 0.281 -1.674 -1.609 -9.781 0.743 -10.140 -3.049 0.383 0.850 -7.493 2.872 ML 250 248 6 253 6 1 1 48 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 45 96 -11.172 -9.901 -5.810 -9.879 -5.013 -0.076 -4.929 -4.495 -5.751 1.965 D 252 248 6 253 6 0 0 45 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 49 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 2 49 100 -6.563 -0.024 -10.074 -8.242 -9.347 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 90 G C = = MP 255 254 6 259 6 2 2 48 99 -15.962 -15.901 -0.062 -14.677 -5.356 -5.824 -1.187 -4.252 -14.066 0.289 -15.160 -12.022 -9.816 -13.988 -11.857 3.836 -12.152 -8.321 -10.067 -12.363 -12.099 -12.739 ML 256 254 6 259 6 1 1 46 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 46 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 44 95 -15.021 -13.719 -9.516 -3.572 -0.364 -2.861 IL 259 259 5 259 6 1 1 47 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 47 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 89 G C = = MP 261 260 6 265 4 2 2 46 97 -15.122 -15.329 -0.120 -3.651 -13.153 -2.927 -14.020 0.472 -3.444 -11.949 -9.723 -13.938 -11.796 3.834 -12.087 -8.263 -9.988 -12.292 -2.980 -12.699 ML 262 260 6 265 4 1 1 45 96 -5.778 -5.961 -0.109 -4.690 -2.509 1.779 -3.337 -1.772 MR 263 260 6 265 4 1 1 44 95 -11.073 -10.102 -7.970 -0.008 -7.288 1.992 -7.755 -6.326 D 264 260 6 265 4 0 0 43 95 -9.912 -9.593 -1.297 -0.760 IL 265 265 5 265 4 1 1 46 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 46 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 1 44 95 -6.051 -0.022 -14.585 -3.738 -3.210 -5.879 1.926 D 268 266 6 269 3 0 0 43 94 -14.664 -0.216 -2.844 IL 269 269 3 269 3 1 1 44 95 -4.728 -0.064 -7.428 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 43 94 -16.112 -0.003 -8.891 -1.497 -3.855 -2.800 1.779 D 271 269 3 272 3 0 0 42 93 -11.830 -0.235 -2.735 IL 272 272 3 272 3 1 1 44 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - A - + - ML 273 272 3 275 3 1 1 42 93 -16.132 -0.000 -14.786 1.346 -1.186 -4.328 -0.047 D 274 272 3 275 3 0 0 41 92 -9.910 -0.077 -4.302 IL 275 275 3 275 3 1 1 43 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 41 92 -4.255 -0.093 -6.657 1.784 -3.697 -2.769 -1.588 D 277 275 3 278 3 0 0 36 88 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 48 99 -0.519 -1.729 -11.029 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.125 -0.020 -6.152 1.605 -1.743 -9.417 -0.603 D 280 278 3 281 3 0 0 11 29 -10.949 -6.462 -0.017 IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - A - + - ML 282 281 3 284 3 1 1 6 12 -6.108 -0.226 -2.935 1.182 0.036 -1.627 -1.389 D 283 281 3 284 3 0 0 4 9 -12.185 -7.698 -0.007 IL 284 284 3 284 3 1 1 6 12 -4.832 -0.060 -7.532 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.957 0.374 -9.650 1.417 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Met-2nd-align LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Met-final-vert.cm ../Met-2nd-align.sto NSEQ 1094 EFFN 6.956856 CKSUM 278576376 STATS LOCAL MSV -8.9425 0.71865 STATS LOCAL VITERBI -9.5447 0.71865 STATS LOCAL FORWARD -3.6898 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29626 1.33041 1.53128 1.40316 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 0.00000 * 1 0.61925 2.22279 1.48345 2.06760 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 2 1.84923 2.29233 0.46352 2.18439 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 3 2.08579 1.46259 1.96962 0.68390 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 4 0.86531 1.75695 1.49344 1.70423 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 5 1.04609 1.75674 1.44420 1.42648 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 6 1.23306 2.48556 0.63068 2.37415 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 7 2.04375 3.66782 0.20418 3.51977 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 8 3.10614 2.80937 3.46660 0.14646 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 9 1.70402 0.35827 3.44957 2.43719 9 C + - , 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 10 0.61602 2.32811 1.39663 2.16283 10 A = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 11 2.92989 2.51220 0.18295 3.42043 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 12 3.44817 0.29112 3.14832 1.72684 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 13 4.18532 3.16317 4.39744 0.07237 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 14 0.18120 3.19484 3.21953 2.46767 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 15 0.10925 3.22190 3.42399 3.47273 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.53191 4.52164 0.91219 1.46634 0.26236 1.09861 0.40547 16 1.65242 1.38695 2.41666 0.75639 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.20591 4.02607 1.78229 1.46634 0.26236 3.66217 0.02601 17 1.59078 1.68799 2.33434 0.66462 17 U + - _ 1.38629 1.38629 1.38629 1.38629 0.86536 3.22525 0.61738 0.85022 0.55743 0.19139 1.74763 18 0.35622 2.68126 2.13162 2.18430 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03331 4.11177 4.11177 1.46634 0.26236 0.99604 0.46099 19 1.51402 1.73562 2.06903 0.73945 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.70145 4.28478 0.71262 1.46634 0.26236 3.10903 0.04567 20 1.97440 1.81294 2.47825 0.48761 21 U + - _ 1.38629 1.38629 1.38629 1.38629 0.27377 1.54564 3.63741 0.23093 1.57890 0.03572 3.34977 21 0.04734 4.38490 4.09870 4.06414 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 22 0.08104 4.55094 2.93520 4.25724 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 23 1.94080 3.39547 0.24572 3.20032 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 24 3.63884 0.20493 2.44077 2.63226 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 25 2.36848 1.50959 2.17419 0.55918 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 26 1.20683 1.76127 1.95740 0.94726 28 u + - , 1.38629 1.38629 1.38629 1.38629 0.04155 3.51233 4.52163 0.61699 0.77558 1.09861 0.40547 27 3.41884 1.87186 3.20821 0.25750 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 28 2.11585 0.94753 2.08687 1.00050 31 c = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 29 2.68026 4.00458 0.11369 3.87801 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 30 3.40921 4.45457 0.05889 4.38225 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 31 2.57595 2.60394 0.21769 3.08866 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 32 3.76466 0.11937 4.30769 2.57854 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 33 3.44371 0.19084 4.05692 2.08358 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 34 3.60799 0.15051 4.18734 2.32855 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 35 0.03738 4.60490 4.23179 4.40991 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 36 3.93510 3.70867 4.48325 0.05694 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 37 0.10566 3.90129 2.87554 3.74354 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03248 3.85927 4.52163 0.83258 0.57080 1.09861 0.40547 38 3.22161 0.18256 2.83827 2.68167 42 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 39 3.37802 0.24754 2.50649 2.26707 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 40 4.50349 0.08395 4.32801 2.87787 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 41 4.07103 0.15519 3.84419 2.25106 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 42 1.20045 2.24794 0.77368 2.02486 46 g = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 43 0.36040 3.37756 1.49994 3.09387 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 44 0.31014 2.22541 2.58159 2.48915 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 45 0.67846 1.38349 2.47557 1.84652 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.52590 4.52163 0.25915 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 47 1.80299 1.30594 1.07729 1.49718 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 48 1.80062 1.30667 1.07818 1.49670 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 49 1.79956 1.30699 1.07858 1.49649 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 50 1.79914 1.30712 1.07873 1.49641 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 51 1.79904 1.30715 1.07877 1.49638 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 52 1.79908 1.30714 1.07875 1.49639 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 57 1.73034 1.22017 1.16207 1.53824 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 58 1.73026 1.22021 1.16210 1.53821 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 59 1.73025 1.22021 1.16211 1.53821 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 60 1.73040 1.22014 1.16205 1.53826 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 61 1.73083 1.21996 1.16190 1.53838 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 62 1.73174 1.21957 1.16156 1.53865 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02779 3.59712 64 0.04808 4.42234 3.87311 4.25857 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.08488 2.65209 4.52163 0.28417 1.39691 1.09861 0.40547 65 3.06915 2.48450 3.63228 0.16994 70 U + - , 1.38629 1.38629 1.38629 1.38629 0.03179 4.52163 3.89144 1.46634 0.26236 1.09861 0.40547 66 3.45284 4.51360 0.05570 4.45968 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.02220 4.51204 4.51204 1.46634 0.26236 1.35531 0.29823 67 1.59460 1.73710 1.52705 0.90683 72 u = - < 1.38629 1.38629 1.38629 1.38629 0.02220 4.51204 4.51204 1.46634 0.26236 1.35531 0.29823 68 1.62382 1.56971 1.61951 0.92444 73 u = - < 1.38629 1.38629 1.38629 1.38629 0.03662 4.51204 3.68974 1.46634 0.26236 1.35531 0.29823 69 1.89526 3.05696 0.29067 2.90166 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.05574 4.49794 3.14468 1.46634 0.26236 1.47234 0.26057 70 1.80276 2.65992 0.37936 2.51453 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.08592 4.46757 2.64711 1.46634 0.26236 1.58385 0.22964 71 2.74351 2.63799 3.33685 0.18802 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03593 3.76427 4.41375 0.84179 0.56376 0.30881 1.32546 72 2.15466 2.60136 2.78681 0.29000 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02391 4.50744 4.37429 1.46634 0.26236 0.70850 0.67802 73 0.66414 1.92961 2.44662 1.37242 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02206 4.51811 4.51811 1.46634 0.26236 0.92081 0.50782 74 0.29322 2.71978 2.61260 2.16359 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07169 2.98017 3.99565 1.24716 0.33872 1.09861 0.40547 75 0.44293 2.20040 2.76473 1.69230 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.51408 3.83428 1.46634 0.26236 1.30620 0.31587 76 0.76848 1.51799 2.07037 1.65553 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14174 3.81464 2.20630 0.81401 0.58533 1.54022 0.24122 77 2.47182 1.27332 3.08303 0.52789 88 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03255 4.39907 3.92542 1.46634 0.26236 0.25411 1.49437 78 2.75054 0.43340 2.46556 1.59530 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.04180 4.50342 3.51085 1.46634 0.26236 0.74855 0.64065 79 2.88672 0.33147 2.86083 1.77695 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.04166 3.51750 4.49794 0.63274 0.75744 0.49114 0.94657 80 1.60056 1.46915 1.50173 1.06319 92 u = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 81 1.81978 1.62921 1.47359 0.88491 93 u = - > 1.38629 1.38629 1.38629 1.38629 0.03820 3.62662 4.52163 0.68151 0.70492 1.09861 0.40547 82 4.36363 0.08248 4.27856 2.94552 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 83 3.74152 0.23155 3.49773 1.87922 96 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 84 2.59173 0.78238 2.34309 0.98950 97 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02729 4.52163 4.13230 1.46634 0.26236 1.09861 0.40547 85 1.55040 1.44766 1.43926 1.15324 98 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02210 4.51645 4.51645 1.46634 0.26236 1.24588 0.33924 86 1.79873 1.57449 1.69376 0.81294 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.07633 4.51645 2.77166 1.46634 0.26236 1.24588 0.33924 87 0.84063 2.05100 1.20932 1.95505 100 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02332 4.46344 4.46344 1.46634 0.26236 0.35943 1.19757 88 2.27892 0.52985 2.25895 1.58741 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02210 4.51645 4.51645 1.46634 0.26236 1.24588 0.33924 89 2.17457 1.60350 2.07855 0.57975 102 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02210 4.51645 4.51645 1.46634 0.26236 0.85655 0.55274 90 0.11527 3.68262 3.02512 3.34769 103 A + - : 1.38629 1.38629 1.38629 1.38629 0.01105 4.51070 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNA2-eukns.cm0000644000543100007160000016025311021467310017157 0ustar pchanlowelab### cove V2 91 nodes ### node 0 type 6 1 -1 0.00407 0.00000 0.97561 0.00000 0.00407 0.01626 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.08333 0.00000 0.33333 0.00000 0.00000 0.58333 0.25000 0.25000 0.25000 0.25000 # INSL 0.30769 0.53846 0.07692 0.07692 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 2 2 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05285 0.06504 0.74797 0.13415 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 2 type 2 3 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04878 0.43902 0.32520 0.18699 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 3 type 2 4 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09350 0.54472 0.16667 0.19512 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 4 type 2 5 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17480 0.29268 0.21138 0.32114 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 5 type 2 6 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.13415 0.37805 0.28862 0.19919 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 6 type 2 7 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.13008 0.30488 0.33740 0.22764 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 7 type 2 8 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.30894 0.05691 0.43089 0.20325 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 8 type 2 9 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00816 0.00000 0.96735 0.00000 0.02449 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11111 0.11111 0.66667 0.11111 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.00407 0.98780 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 9 type 2 10 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00410 0.00000 0.97131 0.00000 0.02459 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.33333 0.11111 0.22222 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.42041 0.01224 0.55510 0.01224 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 10 type 2 11 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01220 0.04472 0.91870 0.02439 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 2 12 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.64228 0.01626 0.33740 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 2 13 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11789 0.30488 0.26829 0.30894 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 2 14 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04472 0.43902 0.17480 0.34146 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 14 type 2 15 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.97561 0.00407 0.01220 0.00813 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 15 type 2 16 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00816 0.00000 0.98776 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.14228 0.00407 0.84146 0.01220 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 16 type 2 17 -1 0.50000 0.00000 0.25000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.66803 0.00000 0.32787 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03265 0.13878 0.06939 0.75918 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 17 type 2 18 -1 0.00602 0.00000 0.98795 0.00000 0.00602 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01220 0.00000 0.96341 0.00000 0.02439 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.40000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02410 0.36145 0.04819 0.56627 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 18 type 2 19 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.98780 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 19 type 2 20 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.97967 0.01220 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 20 type 2 21 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01224 0.00000 0.44898 0.00000 0.53878 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01250 0.00000 0.81875 0.00000 0.16875 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02484 0.17391 0.06211 0.73913 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10569 0.05285 0.04065 0.80081 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.16667 0.00000 0.66667 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00413 0.00000 0.99174 0.00000 0.00413 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.96708 0.00823 0.00412 0.02058 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23984 0.01626 0.54472 0.19919 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29675 0.28049 0.31707 0.10569 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 25 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.32927 0.01626 0.65041 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 2 26 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02439 0.67480 0.04878 0.25203 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.18293 0.03659 0.60163 0.17886 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 2 28 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08130 0.41870 0.13821 0.36179 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 2 29 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15447 0.31301 0.11382 0.41870 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 2 30 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23984 0.25610 0.28049 0.22358 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 30 type 2 31 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01626 0.15041 0.80894 0.02439 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 31 type 2 32 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.39431 0.25610 0.27642 0.07317 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 32 type 2 33 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.77236 0.00407 0.21951 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 33 type 2 34 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.04878 0.00407 0.94309 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20325 0.30894 0.24797 0.23984 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.24797 0.17073 0.23984 0.34146 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29268 0.25203 0.17886 0.27642 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.86122 0.00000 0.13469 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00167 0.00000 0.05500 0.00000 0.94333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.31947 0.18636 0.20466 0.28952 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.71545 0.00813 0.27236 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.62195 0.23171 0.00407 0.14228 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04878 0.27642 0.27236 0.40244 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 41 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00813 0.78862 0.16667 0.03659 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 2 42 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.22358 0.28455 0.25203 0.23984 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00816 0.00000 0.98776 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.37398 0.10976 0.35366 0.16260 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 44 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00410 0.00000 0.99180 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.31837 0.04082 0.45714 0.18367 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 2 45 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.79592 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.55691 0.09350 0.09350 0.25610 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 2 46 -1 0.01961 0.00000 0.96078 0.00000 0.01961 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.97970 0.00000 0.01523 0.00000 0.00508 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07071 0.02020 0.87374 0.03535 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 2 47 -1 0.98974 0.00000 0.00513 0.00000 0.00513 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01887 0.00000 0.96226 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03704 0.31481 0.53704 0.11111 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 47 type 2 48 -1 0.98974 0.00000 0.00513 0.00000 0.00513 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.05660 0.00000 0.92453 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01852 0.24074 0.44444 0.29630 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 48 type 2 49 -1 0.98985 0.00000 0.00508 0.00000 0.00508 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.17647 0.00000 0.80392 0.00000 0.01961 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.42308 0.38462 0.11538 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 49 type 2 50 -1 0.99024 0.00000 0.00488 0.00000 0.00488 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.81395 0.00000 0.16279 0.00000 0.02326 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02273 0.54545 0.25000 0.18182 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 50 type 2 51 -1 0.99163 0.00000 0.00418 0.00000 0.00418 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.55556 0.00000 0.33333 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20000 0.20000 0.10000 0.50000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 51 type 2 52 -1 0.99177 0.00000 0.00412 0.00000 0.00412 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.00000 0.40000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.16667 0.33333 0.33333 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 52 type 2 53 -1 0.79098 0.00000 0.20492 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20000 0.40000 0.20000 0.20000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 53 type 2 54 -1 0.98974 0.00000 0.00513 0.00000 0.00513 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01887 0.00000 0.96226 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09259 0.16667 0.11111 0.62963 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 2 55 -1 0.98974 0.00000 0.00513 0.00000 0.00513 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09434 0.00000 0.88679 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07407 0.37037 0.03704 0.51852 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 55 type 2 56 -1 0.98995 0.00000 0.00503 0.00000 0.00503 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.65306 0.00000 0.32653 0.00000 0.02041 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.18000 0.12000 0.04000 0.66000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 56 type 2 57 -1 0.99130 0.00000 0.00435 0.00000 0.00435 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.72222 0.00000 0.05556 0.00000 0.22222 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.33333 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.14286 0.14286 0.57143 0.14286 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.26316 0.10526 0.47368 0.15789 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 2 58 -1 0.98770 0.00000 0.00820 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20000 0.20000 0.40000 0.20000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.97531 0.00000 0.02058 0.00000 0.00412 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.00000 0.40000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.16667 0.33333 0.33333 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.85000 0.00000 0.14583 0.00000 0.00417 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.22222 0.11111 0.55556 0.11111 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 2 61 -1 0.95146 0.00000 0.04369 0.00000 0.00485 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02381 0.00000 0.95238 0.00000 0.02381 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11628 0.25581 0.60465 0.02326 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 61 type 2 62 -1 0.97980 0.00000 0.01515 0.00000 0.00505 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02000 0.00000 0.96000 0.00000 0.02000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05882 0.39216 0.47059 0.07843 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 62 type 2 63 -1 0.98980 0.00000 0.00510 0.00000 0.00510 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01923 0.00000 0.96154 0.00000 0.01923 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.30189 0.43396 0.22642 0.03774 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 63 type 2 64 -1 0.01020 0.00000 0.98469 0.00000 0.00510 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03846 0.00000 0.94231 0.00000 0.01923 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11321 0.50943 0.32075 0.05660 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 64 type 2 65 -1 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00412 0.00000 0.39918 0.00000 0.59671 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00676 0.00000 0.97973 0.00000 0.01351 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00671 0.05369 0.02013 0.91946 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20492 0.02459 0.75820 0.01230 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 65 type 2 66 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02846 0.82520 0.01626 0.13008 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 66 type 2 67 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08943 0.42683 0.44309 0.04065 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 67 type 2 68 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07724 0.56504 0.13008 0.22764 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19512 0.10569 0.51626 0.18293 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10163 0.02033 0.83740 0.04065 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00813 0.00407 0.98374 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 72 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08537 0.00407 0.00407 0.90650 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 72 type 2 73 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.00407 0.98780 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 73 type 2 74 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.97967 0.00813 0.00813 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 74 type 2 75 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.22764 0.00407 0.76016 0.00813 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 75 type 2 76 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.98780 0.00407 0.00407 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 76 type 2 77 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00816 0.00000 0.98776 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.43496 0.05691 0.13821 0.36992 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 77 type 2 78 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00410 0.00000 0.99180 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10612 0.24490 0.00816 0.64082 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 78 type 2 79 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.97561 0.00407 0.01626 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 79 type 2 80 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04065 0.82927 0.01220 0.11789 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 80 type 2 81 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10163 0.51626 0.17480 0.20732 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 81 type 2 82 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.97143 0.00000 0.02449 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11111 0.66667 0.11111 0.11111 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19919 0.11382 0.58537 0.10163 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 82 type 2 83 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02846 0.39024 0.43902 0.14228 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 83 type 2 84 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20325 0.40650 0.05691 0.33333 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 84 type 2 85 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.12602 0.24390 0.38618 0.24390 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 85 type 2 86 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.14634 0.20325 0.44309 0.20732 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 86 type 2 87 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20732 0.16667 0.40650 0.21951 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 87 type 2 88 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17886 0.10976 0.56504 0.14634 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 88 type 2 89 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19106 0.24390 0.42683 0.13821 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 89 type 2 90 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01224 0.00000 0.98367 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.13415 0.70325 0.06504 0.09756 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 90 type 2 -1 -1 0.75000 0.00000 0.00000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99587 0.00000 0.00000 0.00000 0.00413 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.50000 0.06148 0.36066 0.07787 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-euk-ns.cm0000644000543100007160000016352612706352166017672 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME euk-031616 STATES 274 NODES 92 CLEN 90 W 628 ALPH RNA RF yes CONS yes MAP yes DATE Mon Mar 21 13:07:19 2016 COM [1] cmbuild -F --enone --noss --hand euk-ns-031616.cm euk-031616.sto COM [2] cmcalibrate --hfile euk-ns.hfile --sfile euk-ns.sfile --qqfile euk-ns.qqfile --ffile euk-ns.ffile --seed 208 euk-ns-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28278 EFFN 28278.000000 CKSUM 980995084 NULL 0.000 0.000 0.000 0.000 EFP7GF -19.5502 0.71526 ECMLC 0.70378 -10.51801 -1.32435 1600000 774786 0.001549 ECMGC 0.27499 -26.75890 -13.32076 1600000 16104 0.024839 ECMLI 0.67312 -10.57270 -1.08413 1600000 712852 0.001683 ECMGI 0.27175 -23.94018 -10.40814 1600000 15816 0.025291 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 628 1321 -19.919 -20.126 -0.000 -12.169 IL 1 1 2 1 4 42 58 631 1324 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 42 57 630 1324 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - = - ML 3 2 3 5 3 43 59 629 1322 -18.109 -0.010 -7.199 -2.579 -2.296 1.682 -1.251 D 4 2 3 5 3 39 54 625 1319 -15.958 -3.095 -0.180 IL 5 5 3 5 3 43 59 633 1326 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 3 - C - = - ML 6 5 3 8 3 43 58 628 1321 -8.016 -0.018 -6.903 -2.242 1.046 0.191 -0.780 D 7 5 3 8 3 39 54 625 1318 -20.918 -2.122 -0.377 IL 8 8 3 8 3 44 59 628 1321 -12.405 -0.000 -20.049 0.000 0.000 0.000 0.000 [ MATL 3 ] 5 - C - = - ML 9 8 3 11 3 43 58 627 1320 -6.725 -0.017 -8.948 -1.481 1.246 -1.186 -0.270 D 10 8 3 11 3 38 54 624 1318 -21.885 -1.851 -0.468 IL 11 11 3 11 3 45 58 628 1321 -1.411 -0.681 -22.010 0.000 0.000 0.000 0.000 [ MATL 4 ] 8 - c - = - ML 12 11 3 14 3 43 57 626 1319 -6.130 -0.022 -10.468 -1.056 0.357 0.244 0.076 D 13 11 3 14 3 38 53 624 1317 -21.682 -5.896 -0.024 IL 14 14 3 14 3 44 58 629 1322 -0.504 -1.762 -23.690 0.000 0.000 0.000 0.000 [ MATL 5 ] 13 - g - = - ML 15 14 3 17 3 43 56 625 1318 -6.728 -0.014 -14.232 -0.856 0.139 0.350 0.100 D 16 14 3 17 3 38 53 624 1317 -21.741 -1.096 -0.910 IL 17 17 3 17 3 43 56 626 1319 -1.643 -0.557 -21.885 0.000 0.000 0.000 0.000 [ MATL 6 ] 16 - g - = - ML 18 17 3 20 3 42 55 624 1317 -8.439 -0.005 -10.120 -1.041 -0.119 0.800 -0.231 D 19 17 3 20 3 38 53 623 1316 -20.843 -0.116 -3.699 IL 20 20 3 20 3 42 55 624 1317 -11.982 -0.000 -19.626 0.000 0.000 0.000 0.000 [ MATL 7 ] 18 - g - = - ML 21 20 3 23 3 41 54 623 1316 -5.580 -0.031 -13.727 0.338 -1.222 0.841 -0.953 D 22 20 3 23 3 36 50 621 1315 -18.600 -1.380 -0.700 IL 23 23 3 23 3 42 55 627 1320 -0.383 -2.102 -24.596 0.000 0.000 0.000 0.000 [ MATL 8 ] 25 - U - + - ML 24 23 3 26 3 40 53 622 1315 -5.141 -0.042 -13.801 -7.172 -6.227 -7.443 1.991 D 25 23 3 26 3 35 50 621 1314 -18.018 -0.335 -2.270 IL 26 26 3 26 3 40 53 622 1315 -2.934 -0.202 -23.135 0.000 0.000 0.000 0.000 [ MATL 9 ] 28 - G - + - ML 27 26 3 29 3 39 52 621 1314 -5.228 -0.039 -14.952 0.831 -5.506 1.128 -6.193 D 28 26 3 29 3 34 49 620 1313 -16.191 -0.039 -5.225 IL 29 29 3 29 3 39 52 621 1314 -3.190 -0.167 -23.014 0.000 0.000 0.000 0.000 [ MATL 10 ] 31 - G - = - ML 30 29 3 32 3 38 51 620 1313 -7.644 -0.007 -18.109 -3.308 -2.941 1.891 -4.083 D 31 29 3 32 3 32 46 616 1309 -13.415 -3.449 -0.139 IL 32 32 3 32 3 38 51 620 1313 -12.786 -0.000 -20.430 0.000 0.000 0.000 0.000 [ MATL 11 ] 33 - C - = - ML 33 32 3 35 3 37 50 619 1312 -18.109 -0.000 -14.895 -6.044 1.563 -6.713 0.028 D 34 32 3 35 3 32 46 616 1309 -13.415 -3.449 -0.139 IL 35 35 3 35 3 36 50 622 1316 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 34 - u - = - ML 36 35 3 38 3 36 49 618 1311 -8.104 -0.005 -15.384 -3.106 0.320 -0.297 0.865 D 37 35 3 38 3 32 45 616 1309 -14.229 -1.049 -0.953 IL 38 38 3 38 3 36 49 618 1311 -12.326 -0.000 -19.970 0.000 0.000 0.000 0.000 [ MATL 13 ] 36 - C - = - ML 39 38 3 41 3 35 48 617 1310 -18.109 -0.000 -18.109 -3.893 1.191 -0.424 -0.145 D 40 38 3 41 3 32 45 615 1308 -14.013 -1.322 -0.737 IL 41 41 3 41 3 35 49 620 1314 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 38 - A - + - ML 42 41 3 44 3 34 47 616 1309 -5.319 -0.037 -14.875 1.977 -7.750 -4.904 -5.283 D 43 41 3 44 3 31 45 614 1307 -13.415 -3.449 -0.139 IL 44 44 3 44 3 35 48 620 1313 -0.343 -2.242 -24.998 0.000 0.000 0.000 0.000 [ MATL 15 ] 45 - G - + - ML 45 44 3 47 3 33 46 615 1308 -18.109 -0.000 -12.244 -0.776 -6.866 1.765 -6.778 D 46 44 3 47 3 31 44 613 1307 -14.238 -0.508 -1.753 IL 47 47 3 47 3 34 47 618 1312 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 46 - U - + - ML 48 47 3 50 3 32 45 614 1307 -6.137 -1.448 -0.691 -3.683 -0.778 -2.954 1.683 D 49 47 3 50 3 31 44 612 1306 -15.966 -6.000 -0.023 IL 50 50 3 50 3 34 47 618 1311 -0.415 -2.000 -23.937 0.000 0.000 0.000 0.000 [ MATL 17 ] 51 - U - + - ML 51 50 3 53 3 32 45 613 1307 -3.391 -0.145 -11.747 -3.656 0.404 -3.342 1.321 D 52 50 3 53 3 31 44 612 1306 -27.384 -0.000 -14.378 IL 53 53 3 53 3 32 45 614 1307 -1.304 -0.749 -24.040 0.000 0.000 0.000 0.000 [ MATL 18 ] 56 - G - + - ML 54 53 3 56 3 31 44 612 1306 -18.109 -0.002 -9.363 -5.141 -7.757 1.986 -7.589 D 55 53 3 56 3 28 42 611 1304 -15.271 -0.455 -1.886 IL 56 56 3 56 3 31 45 616 1309 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 57 - G - + - ML 57 56 3 59 3 30 43 611 1305 -18.107 -0.000 -12.920 -5.262 -7.477 1.985 -6.557 D 58 56 3 59 3 28 42 610 1304 -18.748 -0.027 -5.741 IL 59 59 3 59 3 29 44 615 1308 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 58 - U - + - ML 60 59 3 62 3 29 42 610 1304 -0.781 -1.259 -12.740 -2.071 -2.708 -2.282 1.767 D 61 59 3 62 3 24 39 608 1302 -15.447 -0.294 -2.441 IL 62 62 3 62 3 29 41 610 1303 -1.605 -0.575 -27.869 0.000 0.000 0.000 0.000 [ MATL 21 ] 69 - A - + - ML 63 62 3 65 3 28 40 608 1302 -18.109 -0.000 -18.109 1.912 -4.942 -6.207 -2.382 D 64 62 3 65 3 23 38 607 1301 -15.597 -0.059 -4.631 IL 65 65 3 65 3 26 40 612 1305 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 70 - G - = - ML 66 65 3 68 3 27 39 607 1301 -7.926 -0.006 -16.054 0.049 -5.310 1.328 -1.218 D 67 65 3 68 3 21 35 605 1299 -11.551 -1.585 -0.585 IL 68 68 3 68 3 27 39 607 1301 -12.504 -0.000 -20.148 0.000 0.000 0.000 0.000 [ MATL 23 ] 72 - a - = - ML 69 68 3 71 3 26 38 606 1300 -8.073 -0.005 -18.109 0.788 -0.273 0.438 -3.453 D 70 68 3 71 3 21 35 605 1298 -12.588 -0.567 -1.623 IL 71 71 3 71 3 26 38 606 1300 -12.357 -0.000 -20.001 0.000 0.000 0.000 0.000 [ MATL 24 ] 74 - G - = - ML 72 71 3 74 3 25 37 605 1299 -8.231 -0.005 -18.109 -0.048 -5.881 1.584 -5.733 D 73 71 3 74 3 21 34 603 1297 -11.551 -1.585 -0.585 IL 74 74 3 74 3 25 37 605 1299 -12.199 -0.000 -19.843 0.000 0.000 0.000 0.000 [ MATL 25 ] 76 - C - = - ML 75 74 3 77 3 24 36 604 1298 -6.093 -0.021 -13.078 -4.035 1.693 -3.024 -0.777 D 76 74 3 77 3 20 34 603 1296 -11.551 -1.585 -0.585 IL 77 77 3 77 3 24 37 607 1300 -0.524 -1.716 -23.698 0.000 0.000 0.000 0.000 [ MATL 26 ] 81 - G - + - ML 78 77 3 80 3 23 35 603 1297 -7.856 -0.006 -14.491 -0.027 -4.263 1.204 -0.593 D 79 77 3 80 3 20 33 602 1296 -15.083 -0.086 -4.117 IL 80 80 3 80 3 23 35 603 1297 -12.574 -0.000 -20.218 0.000 0.000 0.000 0.000 [ MATL 27 ] 83 - u - = - ML 81 80 3 83 3 22 34 602 1296 -6.254 -0.021 -9.948 -1.378 0.444 -1.448 0.917 D 82 80 3 83 3 19 31 600 1294 -13.801 -3.836 -0.105 IL 83 83 3 83 3 22 35 605 1298 -0.515 -1.735 -23.556 0.000 0.000 0.000 0.000 [ MATL 28 ] 88 - u - = - ML 84 83 3 86 3 21 33 601 1295 -6.752 -0.017 -8.812 -1.456 0.341 -0.526 0.744 D 85 83 3 86 3 19 31 600 1294 -18.193 -0.018 -6.367 IL 86 86 3 86 3 22 34 602 1295 -1.768 -0.501 -21.823 0.000 0.000 0.000 0.000 [ MATL 29 ] 91 - g - = - ML 87 86 3 89 3 21 33 600 1294 -6.776 -0.014 -12.146 0.059 -0.492 0.337 -0.023 D 88 86 3 89 3 16 28 596 1290 -19.270 -6.180 -0.020 IL 89 89 3 89 3 22 33 600 1294 -13.652 -0.000 -21.296 0.000 0.000 0.000 0.000 [ MATL 30 ] 93 - G - = - ML 90 89 3 92 3 21 32 599 1293 -7.492 -0.015 -7.660 -3.927 -1.638 1.769 -2.294 D 91 89 3 92 3 16 28 596 1290 -19.387 -7.227 -0.010 IL 92 92 3 92 3 23 33 599 1293 -12.935 -0.000 -20.579 0.000 0.000 0.000 0.000 [ MATL 31 ] 95 - a - = - ML 93 92 3 95 3 22 32 598 1292 -18.099 -0.000 -18.099 0.950 -0.304 -0.015 -1.898 D 94 92 3 95 3 16 28 596 1290 -20.986 -0.537 -1.686 IL 95 95 3 95 3 20 31 602 1295 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 96 - C - + - ML 96 95 3 98 3 21 31 597 1291 -18.106 -0.000 -13.234 -7.027 1.657 -6.132 -0.278 D 97 95 3 98 3 16 27 594 1287 -19.302 -9.336 -0.002 IL 98 98 3 98 3 20 31 601 1294 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 97 - U - + - ML 99 98 3 101 3 20 30 596 1290 -18.106 -0.000 -16.520 -7.126 -2.699 -6.518 1.937 D 100 98 3 101 3 16 27 594 1287 -19.364 -9.398 -0.002 IL 101 101 3 101 3 20 31 600 1293 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 98 - u - * - ML 102 101 3 104 3 19 29 595 1289 -18.106 -0.000 -14.924 -0.013 -0.011 0.009 0.014 D 103 101 3 104 3 16 27 594 1287 -19.368 -0.060 -4.614 IL 104 104 3 104 3 18 29 599 1292 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 99 - c - * - ML 105 104 3 107 3 18 28 594 1288 -11.063 -0.001 -16.187 -0.008 0.011 0.005 -0.008 D 106 104 3 107 3 14 24 588 1281 -15.164 -3.612 -0.123 IL 107 107 3 107 3 18 28 594 1288 -9.360 -0.002 -17.004 0.000 0.000 0.000 0.000 [ MATL 36 ] 101 - a - * - ML 108 107 3 110 3 17 27 593 1287 -18.109 -0.001 -11.300 0.008 -0.010 0.005 -0.003 D 109 107 3 110 3 14 24 587 1280 -15.194 -0.197 -2.969 IL 110 110 3 110 3 17 28 596 1289 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 102 - A - + - ML 111 110 3 113 3 16 26 592 1286 -2.104 -0.382 -18.109 1.458 -4.300 0.235 -5.257 D 112 110 3 113 3 13 22 207 900 -16.835 -4.948 -0.048 IL 113 113 3 113 3 18 28 646 1339 -0.038 -5.253 -31.224 0.000 0.000 0.000 0.000 [ MATL 38 ] 180 - A - + - ML 114 113 3 116 3 15 25 107 330 -7.692 -0.013 -7.932 1.435 -0.585 -5.878 -0.708 D 115 113 3 116 3 13 22 106 329 -16.800 -0.026 -5.835 IL 116 116 3 116 3 16 26 107 330 -12.738 -0.000 -20.381 0.000 0.000 0.000 0.000 [ MATL 39 ] 182 - U - = - ML 117 116 3 119 3 15 25 106 329 -7.626 -0.007 -13.592 -2.394 -0.069 -0.261 1.016 D 118 116 3 119 3 11 20 102 325 -20.145 -4.047 -0.090 IL 119 119 3 119 3 15 25 106 329 -12.799 -0.000 -20.443 0.000 0.000 0.000 0.000 [ MATL 40 ] 184 - C - = - ML 120 119 3 122 3 14 24 105 328 -6.922 -0.012 -14.341 -5.953 1.715 -0.974 -2.387 D 121 119 3 122 3 11 20 102 325 -20.085 -2.876 -0.211 IL 122 122 3 122 3 14 24 105 328 -13.503 -0.000 -21.147 0.000 0.000 0.000 0.000 [ MATL 41 ] 187 - c - = - ML 123 122 3 125 3 13 23 104 327 -7.957 -0.020 -6.719 -0.053 0.258 -0.375 0.097 D 124 122 3 125 3 11 20 102 325 -19.894 -1.773 -0.500 IL 125 125 3 125 3 13 23 104 327 -12.469 -0.000 -20.112 0.000 0.000 0.000 0.000 [ MATL 42 ] 189 - a - = - ML 126 125 3 128 3 12 22 103 326 -8.441 -0.024 -6.214 0.620 -0.479 0.358 -1.110 D 127 125 3 128 3 11 20 101 324 -21.682 -0.952 -1.050 IL 128 128 3 128 3 12 22 103 326 -11.972 -0.000 -19.616 0.000 0.000 0.000 0.000 [ MATL 43 ] 191 - g - = - ML 129 128 3 131 3 11 21 102 325 -18.082 -0.000 -13.250 0.677 -4.331 0.808 -0.735 D 130 128 3 131 3 10 20 101 324 -22.362 -0.001 -11.396 IL 131 131 3 131 3 12 21 108 329 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 192 - A - + - ML 132 131 3 134 3 10 20 101 324 -6.675 -0.484 -1.860 1.127 -1.839 -1.371 0.201 D 133 131 3 134 3 9 19 102 325 -14.895 -4.930 -0.048 IL 134 134 3 134 3 11 21 102 325 -0.585 -1.585 -22.985 0.000 0.000 0.000 0.000 [ MATL 45 ] 196 - G - + - ML 135 134 3 137 3 9 20 99 322 -17.645 -3.875 -0.102 -3.934 -2.164 1.811 -2.310 D 136 134 3 137 3 9 19 102 325 -26.215 -0.644 -1.474 IL 137 137 3 137 3 12 22 111 332 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 197 - G - = - ML 138 137 3 140 3 12 21 104 327 -15.962 -0.000 -12.446 -1.048 -0.161 1.293 -2.540 D 139 137 3 140 3 8 19 97 320 -27.706 -10.921 -0.001 IL 140 140 3 140 3 12 21 110 331 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 198 - u - = - ML 141 140 3 143 3 11 20 103 326 -4.803 -0.096 -5.120 -2.412 -0.356 0.533 0.663 D 142 140 3 143 3 8 19 97 320 -27.706 -14.224 -0.000 IL 143 143 3 143 3 11 21 103 326 -13.482 -0.000 -21.126 0.000 0.000 0.000 0.000 [ MATL 48 ] 201 - g - = - ML 144 143 3 146 3 10 20 102 325 -15.922 -0.289 -2.463 -1.373 0.326 0.641 -0.321 D 145 143 3 146 3 8 19 97 320 -27.718 -17.752 -0.000 IL 146 146 3 146 3 11 21 108 330 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 202 - c - = - ML 147 146 3 149 3 10 20 101 325 -15.634 -1.792 -0.492 -3.468 0.823 0.693 -0.932 D 148 146 3 149 3 8 19 97 320 -27.789 -7.073 -0.011 IL 149 149 3 149 3 11 21 112 336 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 203 - U - = - ML 150 149 3 152 3 10 20 106 331 -14.002 -1.736 -0.515 -0.451 -2.625 -2.772 1.566 D 151 149 3 152 3 8 19 97 320 -27.989 -8.258 -0.005 IL 152 152 3 152 3 12 21 120 345 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 204 - u - = - ML 153 152 3 155 3 10 20 114 340 -12.501 -0.419 -1.990 0.092 -8.795 -0.061 0.981 D 154 152 3 155 3 8 19 97 320 -28.045 -5.941 -0.024 IL 155 155 3 155 3 12 22 121 347 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 205 - a - = - ML 156 155 3 158 3 13 22 116 342 -1.005 -0.995 -13.111 0.993 -0.078 -0.464 -1.566 D 157 155 3 158 3 8 19 96 318 -28.029 -2.351 -0.315 IL 158 158 3 158 3 13 23 117 343 -0.415 -2.000 -24.072 0.000 0.000 0.000 0.000 [ MATL 53 ] 211 - u - + - ML 159 158 3 161 3 11 21 113 338 -15.933 -0.001 -10.497 -0.058 -1.320 -0.369 0.899 D 160 158 3 161 3 8 18 89 255 -27.715 -10.100 -0.001 IL 161 161 3 161 3 12 21 117 342 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 212 - U - + - ML 162 161 3 164 3 10 20 112 337 -15.936 -0.030 -5.616 -1.339 0.408 -3.655 1.137 D 163 161 3 164 3 8 18 89 238 -27.714 -11.969 -0.000 IL 164 164 3 164 3 11 21 116 341 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 213 - U - + - ML 165 164 3 167 3 9 20 111 337 -14.164 -1.247 -0.789 0.379 -1.102 -3.496 1.101 D 166 164 3 167 3 8 18 89 220 -27.722 -8.957 -0.003 IL 167 167 3 167 3 12 21 230 456 -0.118 -3.676 -14.910 0.000 0.000 0.000 0.000 [ MATL 56 ] 228 - u - + - ML 168 167 3 170 3 9 20 91 178 -3.933 -2.774 -0.343 0.333 -2.862 0.362 0.398 D 169 167 3 170 3 8 18 89 175 -27.934 -5.862 -0.025 IL 170 170 3 170 3 11 21 94 181 -13.074 -0.000 -20.718 0.000 0.000 0.000 0.000 [ MATL 57 ] 231 - A - = - ML 171 170 3 173 3 10 20 93 180 -13.286 -0.241 -2.699 1.118 -2.573 -0.161 -0.382 D 172 170 3 173 3 8 18 88 175 -28.023 -7.135 -0.010 IL 173 173 3 173 3 12 21 102 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 232 - c - = - ML 174 173 3 176 3 10 20 93 180 -13.343 -0.166 -3.203 -1.687 0.936 0.192 -0.659 D 175 173 3 176 3 8 18 88 175 -28.021 -4.884 -0.050 IL 176 176 3 176 3 12 21 101 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 233 - g - = - ML 177 176 3 179 3 10 20 92 179 -14.174 -0.135 -3.484 -0.685 -2.687 0.964 0.346 D 178 176 3 179 3 8 18 88 175 -27.978 -2.898 -0.208 IL 179 179 3 179 3 12 21 100 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 234 - g - = - ML 180 179 3 182 3 11 22 91 178 -15.674 -0.000 -15.674 -1.340 0.586 0.956 -2.614 D 181 179 3 182 3 8 18 87 174 -27.780 -4.706 -0.056 IL 182 182 3 182 3 11 21 99 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 235 - c - = - ML 183 182 3 185 3 10 21 90 177 -4.457 -0.068 -10.721 -2.127 0.816 0.543 -0.855 D 184 182 3 185 3 8 18 87 174 -27.724 -6.831 -0.013 IL 185 185 3 185 3 10 21 90 177 -13.764 -0.000 -21.408 0.000 0.000 0.000 0.000 [ MATL 62 ] 237 - a - = - ML 186 185 3 188 3 9 20 89 176 -5.130 -0.043 -11.023 0.766 0.505 -0.357 -3.328 D 187 185 3 188 3 8 18 87 174 -27.711 -14.230 -0.000 IL 188 188 3 188 3 9 20 90 177 -1.000 -1.000 -21.779 0.000 0.000 0.000 0.000 [ MATL 63 ] 240 - C - = - ML 189 188 3 191 3 8 19 88 175 -15.944 -0.078 -4.248 -2.595 1.241 -0.133 -0.837 D 190 188 3 191 3 8 18 87 174 -27.711 -0.005 -8.296 IL 191 191 3 191 3 9 19 96 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 241 - G - + - ML 192 191 3 194 3 8 19 87 174 -0.409 -2.019 -18.089 -1.416 -6.187 1.823 -3.776 D 193 191 3 194 3 5 16 85 172 -21.938 -0.033 -5.470 IL 194 194 3 194 3 8 18 86 173 -6.785 -0.013 -27.659 0.000 0.000 0.000 0.000 [ MATL 65 ] 244 - C - + - ML 195 194 3 197 3 7 17 85 172 -18.109 -0.000 -12.561 -4.601 1.712 -3.374 -0.769 D 196 194 3 197 3 4 13 84 171 -16.484 -0.292 -2.448 IL 197 197 3 197 3 6 17 93 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 245 - G - = - ML 198 197 3 200 3 6 16 84 171 -8.113 -0.005 -13.072 -1.235 0.580 1.017 -4.163 D 199 197 3 200 3 2 12 83 170 -15.956 -0.698 -1.383 IL 200 200 3 200 3 6 16 84 171 -12.317 -0.000 -19.960 0.000 0.000 0.000 0.000 [ MATL 67 ] 247 - c - = - ML 201 200 3 203 3 5 15 83 170 -6.531 -0.016 -14.588 -1.982 0.865 -1.192 0.573 D 202 200 3 203 3 2 11 82 169 -15.804 -0.361 -2.175 IL 203 203 3 203 3 5 16 86 173 -0.671 -1.427 -22.970 0.000 0.000 0.000 0.000 [ MATL 68 ] 251 - G - = - ML 204 203 3 206 3 4 14 82 169 -7.103 -0.011 -14.337 -0.727 -1.450 1.231 -0.551 D 205 203 3 206 3 0 11 81 168 -14.560 -0.368 -2.153 IL 206 206 3 206 3 4 14 83 170 -1.315 -0.742 -21.713 0.000 0.000 0.000 0.000 [ MATL 69 ] 254 - G - = - ML 207 206 3 209 3 3 13 81 168 -8.098 -0.005 -15.986 -1.429 -4.792 1.817 -3.866 D 208 206 3 209 3 0 10 80 167 -14.221 -0.483 -1.814 IL 209 209 3 209 3 3 13 81 168 -12.332 -0.000 -19.976 0.000 0.000 0.000 0.000 [ MATL 70 ] 256 - G - = - ML 210 209 3 212 3 2 12 80 167 -7.925 -0.008 -9.533 -6.767 -6.585 1.986 -5.620 D 211 209 3 212 3 0 10 79 166 -13.257 -1.168 -0.850 IL 212 212 3 212 3 2 12 80 167 -12.505 -0.000 -20.149 0.000 0.000 0.000 0.000 [ MATL 71 ] 258 - U - + - ML 213 212 3 215 3 1 11 79 166 -6.085 -0.022 -12.312 -3.473 -6.580 -7.354 1.961 D 214 212 3 215 3 0 9 78 165 -18.562 -0.007 -7.597 IL 215 215 3 215 3 3 12 83 170 -0.499 -1.774 -23.761 0.000 0.000 0.000 0.000 [ MATL 72 ] 263 - U - + - ML 216 215 3 218 3 2 10 78 165 -6.095 -0.021 -16.137 -7.769 -6.037 -7.467 1.991 D 217 215 3 218 3 0 6 76 163 -15.812 -5.847 -0.025 IL 218 218 3 218 3 2 11 83 170 -0.467 -1.856 -23.836 0.000 0.000 0.000 0.000 [ MATL 73 ] 268 - C - + - ML 219 218 3 221 3 1 9 77 164 -6.096 -0.021 -16.452 -3.861 1.942 -6.969 -3.609 D 220 218 3 221 3 0 6 76 163 -15.884 -0.049 -4.918 IL 221 221 3 221 3 2 10 81 168 -0.515 -1.736 -23.714 0.000 0.000 0.000 0.000 [ MATL 74 ] 273 - G - + - ML 222 221 3 224 3 1 8 76 163 -8.053 -0.005 -15.084 0.389 -6.445 1.418 -7.239 D 223 221 3 224 3 0 5 73 160 -12.332 -0.709 -1.366 IL 224 224 3 224 3 1 8 76 163 -12.377 -0.000 -20.021 0.000 0.000 0.000 0.000 [ MATL 75 ] 275 - A - + - ML 225 224 3 227 3 1 7 75 162 -5.586 -0.030 -15.942 1.987 -7.601 -6.271 -5.737 D 226 224 3 227 3 0 5 56 136 -13.308 -0.317 -2.342 IL 227 227 3 227 3 2 8 92 179 -0.306 -2.389 -24.879 0.000 0.000 0.000 0.000 [ MATL 76 ] 282 - a - + - ML 228 227 3 230 3 1 6 55 113 -7.011 -0.012 -11.241 0.534 -2.334 -0.095 0.503 D 229 227 3 230 3 0 4 53 111 -12.665 -2.699 -0.242 IL 230 230 3 230 3 1 7 56 114 -1.347 -0.721 -21.784 0.000 0.000 0.000 0.000 [ MATL 77 ] 285 - U - + - ML 231 230 3 233 3 1 5 54 112 -7.164 -0.011 -10.769 -2.743 0.769 -5.463 1.087 D 232 230 3 233 3 0 4 53 111 -16.900 -0.024 -5.934 IL 233 233 3 233 3 1 5 54 112 -13.266 -0.000 -20.910 0.000 0.000 0.000 0.000 [ MATL 78 ] 288 - C - = - ML 234 233 3 236 3 1 4 53 111 -8.041 -0.006 -15.897 -5.598 1.984 -7.361 -5.950 D 235 233 3 236 3 0 0 52 110 -17.323 -0.018 -6.358 IL 236 236 3 236 3 1 4 53 111 -12.388 -0.000 -20.032 0.000 0.000 0.000 0.000 [ MATL 79 ] 290 - C - = - ML 237 236 3 239 3 1 3 52 110 -18.109 -0.000 -14.812 -3.646 1.810 -4.819 -1.398 D 238 236 3 239 3 0 0 50 111 -12.695 -2.729 -0.236 IL 239 239 3 239 3 1 1 73 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 80 ] 291 - C - = - ML 240 239 3 242 3 1 2 51 109 -18.109 -0.000 -13.836 -1.548 1.217 -0.519 -0.653 D 241 239 3 242 3 0 0 50 109 -13.916 -0.200 -2.951 IL 242 242 3 242 3 1 1 72 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 81 ] 292 - G - = - ML 243 242 3 245 3 1 2 50 108 -4.637 -0.059 -14.700 0.380 -1.244 1.011 -1.936 D 244 242 3 245 3 0 0 48 106 -14.381 -0.288 -2.466 IL 245 245 3 245 3 1 2 50 108 -2.043 -0.401 -23.839 0.000 0.000 0.000 0.000 [ MATL 82 ] 296 - c - = - ML 246 245 3 248 3 1 1 49 106 -5.152 -0.044 -9.274 -4.161 0.933 0.565 -0.849 D 247 245 3 248 3 0 0 37 87 -13.822 -0.214 -2.857 IL 248 248 3 248 3 1 2 59 117 -0.462 -1.867 -24.789 0.000 0.000 0.000 0.000 [ MATL 83 ] 303 - c - = - ML 249 248 3 251 3 1 1 37 80 -8.042 -0.008 -9.316 -0.917 0.641 -1.056 0.516 D 250 248 3 251 3 0 0 35 79 -18.808 -0.622 -1.515 IL 251 251 3 251 3 1 2 37 80 -12.386 -0.000 -20.030 0.000 0.000 0.000 0.000 [ MATL 84 ] 305 - u - = - ML 252 251 3 254 3 1 1 36 79 -8.030 -0.006 -11.693 -0.784 0.182 0.180 0.205 D 253 251 3 254 3 0 0 34 77 -19.203 -2.677 -0.245 IL 254 254 3 254 3 1 2 36 79 -12.397 -0.000 -20.041 0.000 0.000 0.000 0.000 [ MATL 85 ] 307 - g - = - ML 255 254 3 257 3 1 1 35 78 -6.455 -0.017 -11.563 -0.131 -0.127 0.322 -0.118 D 256 254 3 257 3 0 0 33 77 -19.181 -0.388 -2.085 IL 257 257 3 257 3 1 2 37 80 -1.000 -1.000 -22.617 0.000 0.000 0.000 0.000 [ MATL 86 ] 311 - g - = - ML 258 257 3 260 3 1 1 34 77 -6.234 -0.019 -13.913 -0.593 0.107 0.738 -0.754 D 259 257 3 260 3 0 0 31 75 -17.832 -1.459 -0.653 IL 260 260 3 260 3 1 2 34 77 -14.196 -0.000 -21.840 0.000 0.000 0.000 0.000 [ MATL 87 ] 313 - G - = - ML 261 260 3 263 3 1 1 33 76 -6.417 -0.017 -15.631 -0.397 -1.800 1.289 -0.971 D 262 260 3 263 3 0 0 30 73 -17.347 -3.458 -0.138 IL 263 263 3 263 3 1 2 36 79 -0.828 -1.196 -22.853 0.000 0.000 0.000 0.000 [ MATL 88 ] 317 - G - = - ML 264 263 3 266 3 1 1 32 75 -6.204 -0.020 -18.109 -0.604 -0.149 1.011 -1.233 D 265 263 3 266 3 0 0 29 73 -17.262 -0.708 -1.367 IL 266 266 3 266 3 1 1 34 78 -0.854 -1.163 -23.033 0.000 0.000 0.000 0.000 [ MATL 89 ] 321 - C - = - ML 267 266 3 269 3 1 1 31 74 -6.116 -0.054 -5.505 -1.218 1.634 -2.283 -1.937 D 268 266 3 269 3 0 0 14 57 -15.918 -5.952 -0.024 IL 269 269 3 269 3 1 2 40 83 -0.610 -1.536 -23.495 0.000 0.000 0.000 0.000 [ MATL 90 ] 325 - A - + - ML 270 269 3 272 2 1 1 1 1 * 0.000 1.195 -2.938 -0.035 -0.725 D 271 269 3 272 2 0 0 0 0 * 0.000 IL 272 272 3 272 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 91 ] - - - - - - E 273 272 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-031616 LENG 90 MAXL 628 ALPH RNA RF yes MM no CONS yes CS yes MAP no DATE Mon Mar 21 13:07:19 2016 COM [1] cmbuild -F --enone --noss --hand euk-ns-031616.cm euk-031616.sto COM [2] cmbuild -F --enone --noss --hand euk-ns-031616.cm euk-031616.sto NSEQ 28278 EFFN 28278.000000 STATS LOCAL MSV -8.6868 0.71526 STATS LOCAL VITERBI -9.3530 0.71526 STATS LOCAL FORWARD -3.6669 0.71526 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59603 1.36424 1.16483 1.47076 1.38629 1.38629 1.38629 1.38629 0.00022 13.80711 8.43481 0.39730 1.11515 0.00000 * 1 3.17396 2.97748 0.22040 2.25337 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00683 12.55228 4.98986 1.46634 0.26236 2.14533 0.12446 2 2.94019 0.66148 1.25363 1.92695 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01230 5.55592 4.78464 0.00018 8.59831 1.47073 0.26105 3 2.41258 0.52232 2.20826 1.57319 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01154 4.66154 6.20203 0.47178 0.97787 1.28336 0.32449 4 2.11850 1.13900 1.21691 1.33368 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01510 4.24895 7.25570 1.22143 0.34928 4.08704 0.01693 5 1.97934 1.29006 1.14377 1.31688 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00953 4.66365 9.86497 0.38602 1.13867 0.76001 0.63048 6 2.10787 1.46903 0.83152 1.54661 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00379 5.84915 7.01478 0.00025 8.30520 0.08014 2.56382 7 1.15227 2.23364 0.80332 2.04715 - g = - : 1.38629 1.38629 1.38629 1.38629 0.02121 3.86748 9.51484 1.45716 0.26514 0.95631 0.48501 8 6.35747 5.70251 6.54513 0.00653 - U + - : 1.38629 1.38629 1.38629 1.38629 0.02883 3.56332 9.56632 0.14019 2.03402 0.23232 1.57357 9 0.81057 5.20294 0.60426 5.67867 - G + - : 1.38629 1.38629 1.38629 1.38629 0.02707 3.62392 10.36406 0.11603 2.21136 0.02710 3.62179 10 3.67900 3.42513 0.07531 4.21652 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00501 5.29861 12.55247 0.00014 8.86277 2.39051 0.09605 11 5.57561 0.30262 6.03942 1.36669 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00004 12.55247 10.32462 1.46634 0.26236 2.39051 0.09605 12 3.53931 1.16466 1.59213 0.78648 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00366 5.61729 10.66324 0.00019 8.54386 0.72700 0.66040 13 4.08483 0.56089 1.68013 1.48668 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00001 12.55245 12.55245 1.46634 0.26236 0.91616 0.51091 14 0.01606 6.75811 4.78533 5.04849 - A + - : 1.38629 1.38629 1.38629 1.38629 0.02541 3.68672 10.31084 1.55403 0.23749 2.39051 0.09605 15 1.92420 6.14514 0.16301 6.08467 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00021 12.55244 8.48713 1.46634 0.26236 0.35205 1.21485 16 3.93942 1.92567 3.43382 0.22002 - U + - : 1.38629 1.38629 1.38629 1.38629 1.00387 4.25390 0.47911 1.38630 0.28768 4.15917 0.01574 17 3.92048 1.10640 3.70297 0.47037 - U + - : 1.38629 1.38629 1.38629 1.38629 0.10052 2.35026 8.14219 0.51934 0.90365 0.00005 9.96618 18 4.95007 6.76276 0.00958 6.64663 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00152 12.55237 6.48993 1.46634 0.26236 0.31544 1.30737 19 5.03333 6.56882 0.01063 5.93148 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00013 12.55095 8.95547 1.46634 0.26236 0.01887 3.97969 20 2.82168 3.26366 2.96788 0.16154 - U + - : 1.38629 1.38629 1.38629 1.38629 0.87263 0.54128 8.83054 0.39842 1.11285 0.20359 1.69172 21 0.06130 4.81202 5.68861 3.03772 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00001 12.55233 12.55233 1.46634 0.26236 0.04119 3.21016 22 1.35237 5.06670 0.46587 2.23044 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00413 5.49423 11.12745 0.00017 8.66707 1.09861 0.40547 23 0.84033 1.57535 1.08273 3.77982 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00372 5.59597 12.55248 0.00019 8.56524 0.39271 1.12461 24 1.41970 5.46236 0.28866 5.35985 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00334 5.70511 12.55250 0.00021 8.45604 1.09861 0.40547 25 4.18320 0.21304 3.48255 1.92484 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01487 4.22351 9.06488 1.18946 0.36296 1.09861 0.40547 26 1.40507 4.34138 0.55187 1.79724 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00437 5.44563 10.04469 0.00016 8.71558 0.05935 2.85382 27 2.34163 1.07820 2.39005 0.75078 - u = - : 1.38629 1.38629 1.38629 1.38629 0.01421 4.33510 6.89543 1.20279 0.35718 2.65862 0.07262 28 2.39560 1.15020 1.75074 0.87069 - u = - : 1.38629 1.38629 1.38629 1.38629 0.01157 4.68000 6.10808 0.34748 1.22576 0.01219 4.41328 29 1.34538 1.72699 1.15293 1.40231 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00939 4.69655 8.41924 0.00008 9.46287 4.28334 0.01389 30 4.10831 2.52195 0.15984 2.97635 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01056 5.19299 5.30931 0.00013 8.96606 5.00928 0.00670 31 0.72774 1.59695 1.39671 2.70188 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00001 12.54514 12.54514 1.46634 0.26236 0.37231 1.16841 32 6.25729 0.23790 5.63684 1.57874 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00011 12.55022 9.17311 1.46634 0.26236 6.47146 0.00155 33 6.32566 3.25726 5.90416 0.04396 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00001 12.55012 11.45088 1.46634 0.26236 6.51429 0.00148 34 1.39530 1.39381 1.37980 1.37641 - u * - : 1.38629 1.38629 1.38629 1.38629 0.00004 12.55011 10.34468 1.46634 0.26236 0.04169 3.19824 35 1.39169 1.37897 1.38293 1.39166 - c * - : 1.38629 1.38629 1.38629 1.38629 0.00048 7.66853 11.22023 0.00152 6.48766 2.50374 0.08532 36 1.38076 1.39357 1.38265 1.38825 - a * - : 1.38629 1.38629 1.38629 1.38629 0.00040 12.55237 7.83261 1.46634 0.26236 0.13666 2.05784 37 0.37595 4.36673 1.22372 5.03033 - A + - : 1.38629 1.38629 1.38629 1.38629 0.26483 1.45816 12.55209 3.64122 0.02657 3.42944 0.03294 38 0.39154 1.79169 5.46045 1.87694 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00897 5.33195 5.49808 0.00015 8.82905 0.01768 4.04430 39 3.04599 1.43409 1.56744 0.68213 - U = - : 1.38629 1.38629 1.38629 1.38629 0.00516 5.28568 9.42128 0.00014 8.87164 2.80503 0.06241 40 5.51228 0.19738 2.06134 3.04078 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00833 4.79789 9.94027 0.00009 9.35979 1.99358 0.14642 41 1.42309 1.20767 1.64641 1.31902 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01361 5.51528 4.65756 0.00018 8.64256 1.22871 0.34626 42 0.95628 1.71820 1.13799 2.15563 - a = - : 1.38629 1.38629 1.38629 1.38629 0.01648 5.85068 4.30724 0.00025 8.29838 0.65986 0.72758 43 0.91737 4.38803 0.82600 1.89573 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00011 12.53327 9.18427 1.46634 0.26236 0.00037 7.89899 44 0.60495 2.66091 2.33628 1.24713 - A + - : 1.38629 1.38629 1.38629 1.38629 0.33572 4.62679 1.28957 1.09862 0.40546 3.41687 0.03337 45 4.11342 2.88661 0.13072 2.98731 - G + - : 1.38629 1.38629 1.38629 1.38629 2.68572 12.23028 0.07061 1.46634 0.26236 0.44633 1.02157 46 2.11238 1.49773 0.49032 3.14696 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00019 11.06390 8.62694 1.46634 0.26236 7.56978 0.00052 47 3.05799 1.63279 1.01678 0.92665 - u = - : 1.38629 1.38629 1.38629 1.38629 0.06674 3.32946 3.54902 0.00009 9.34514 9.85931 0.00005 48 2.33823 1.16030 0.94168 1.60874 - g = - : 1.38629 1.38629 1.38629 1.38629 0.20020 11.03650 1.70695 1.46634 0.26236 12.30458 0.00000 49 3.79016 0.81574 0.90618 2.03233 - c = - : 1.38629 1.38629 1.38629 1.38629 1.24191 10.83633 0.34088 1.46634 0.26236 4.90264 0.00745 50 1.69925 3.20612 3.30745 0.30103 - U = - : 1.38629 1.38629 1.38629 1.38629 1.20300 9.70544 0.35718 1.46634 0.26236 5.72425 0.00327 51 1.32276 7.48260 1.42829 0.70660 - u = - : 1.38629 1.38629 1.38629 1.38629 0.29027 8.66522 1.37924 1.46634 0.26236 4.11772 0.01642 52 0.69801 1.44055 1.70813 2.47187 - a = - : 1.38629 1.38629 1.38629 1.38629 0.68984 0.69669 9.08796 1.38630 0.28768 1.62967 0.21815 53 1.42663 2.30139 1.64185 0.76326 - u + - : 1.38629 1.38629 1.38629 1.38629 0.00071 11.04358 7.27580 1.46634 0.26236 7.00064 0.00091 54 2.31457 1.10353 3.91957 0.59848 - U + - : 1.38629 1.38629 1.38629 1.38629 0.02061 11.04609 3.89287 1.46634 0.26236 8.29654 0.00025 55 1.12391 2.15040 3.80929 0.62289 - U + - : 1.38629 1.38629 1.38629 1.38629 0.86464 9.81777 0.54689 2.54820 0.08145 6.20872 0.00201 56 1.15565 3.37041 1.13521 1.11044 - u + - : 1.38629 1.38629 1.38629 1.38629 1.92254 2.72585 0.23791 0.00012 9.06207 4.06346 0.01734 57 0.61144 3.16991 1.49799 1.65108 - A = - : 1.38629 1.38629 1.38629 1.38629 0.16738 9.20891 1.87068 1.46634 0.26236 4.94578 0.00714 58 2.55540 0.73717 1.25354 1.84275 - c = - : 1.38629 1.38629 1.38629 1.38629 0.11503 9.24844 2.22043 1.46634 0.26236 3.38527 0.03446 59 1.86090 3.24884 0.71789 1.14612 - g = - : 1.38629 1.38629 1.38629 1.38629 0.09365 9.82482 2.41523 1.46634 0.26236 2.00866 0.14407 60 2.31531 0.98006 0.72332 3.19809 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00004 10.86472 10.86472 1.46634 0.26236 3.26185 0.03907 61 2.86094 0.82055 1.00958 1.97888 - c = - : 1.38629 1.38629 1.38629 1.38629 0.04722 3.08945 7.43157 0.00007 9.54048 4.73471 0.00882 62 0.85512 1.03644 1.63396 3.69311 - a = - : 1.38629 1.38629 1.38629 1.38629 0.02946 3.55604 7.64025 0.69319 0.69311 9.86335 0.00005 63 3.18492 0.52644 1.47878 1.96613 - C = - : 1.38629 1.38629 1.38629 1.38629 0.05409 11.05124 2.94429 1.46634 0.26236 0.00319 5.75064 64 2.36793 5.67501 0.12257 4.00339 - G + - : 1.38629 1.38629 1.38629 1.38629 1.39925 0.28341 12.53820 0.00911 4.70335 0.02283 3.79119 65 4.57581 0.19982 3.72516 1.91924 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00017 12.55218 8.70670 1.46634 0.26236 0.20239 1.69705 66 2.24246 0.98393 0.68121 4.27163 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00373 5.62376 9.06071 0.00020 8.53723 0.48355 0.95865 67 2.76017 0.78680 2.21234 0.98893 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01091 4.52701 10.11156 0.98886 0.46522 0.25023 1.50789 68 1.88992 2.39160 0.53306 1.76827 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00735 4.92333 9.93745 0.51407 0.91145 0.25477 1.49207 69 2.37699 4.70766 0.12670 4.06611 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00367 5.61301 11.08066 0.00019 8.54815 0.33459 1.25747 70 6.07652 5.95068 0.01004 5.28144 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00548 5.49320 6.60795 0.00017 8.66807 0.80936 0.58905 71 3.79325 5.94716 6.48365 0.02703 - U + - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.21807 8.53396 1.22941 0.34597 0.00518 5.26550 72 6.77105 5.57066 6.56183 0.00639 - U + - : 1.38629 1.38629 1.38629 1.38629 0.01475 4.22456 11.18519 1.28624 0.32339 4.05255 0.01753 73 4.06283 0.04049 6.21680 3.88795 - C + - : 1.38629 1.38629 1.38629 1.38629 0.01473 4.22570 11.40333 1.20324 0.35699 0.03363 3.40897 74 1.11654 5.85350 0.40337 6.40417 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00380 5.58213 10.45574 0.00019 8.57910 0.49099 0.94681 75 0.00925 6.65491 5.73336 5.36300 - A + - : 1.38629 1.38629 1.38629 1.38629 0.02106 3.87172 11.05024 1.65620 0.21179 0.21971 1.62331 76 1.01600 3.00385 1.45214 1.03762 - a + - : 1.38629 1.38629 1.38629 1.38629 0.00820 4.85971 7.79194 0.49945 0.93360 1.87052 0.16729 77 3.28762 0.85326 5.17301 0.63306 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00758 4.96557 7.46440 0.00010 9.19557 0.01649 4.11333 78 5.26650 0.01078 6.48841 5.51075 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00382 5.57375 11.01924 0.00019 8.58692 0.01227 4.40680 79 3.91358 0.13204 4.72654 2.35527 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00004 12.55248 10.26707 1.46634 0.26236 1.89170 0.16348 80 2.45956 0.54286 1.74616 1.83886 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00007 12.55245 9.59068 1.46634 0.26236 0.13853 2.04513 81 1.12257 2.24871 0.68582 2.72804 - G = - : 1.38629 1.38629 1.38629 1.38629 0.04106 3.21400 10.18934 0.27802 1.41584 0.19964 1.70941 82 4.27077 0.73932 0.99467 1.97512 - c = - : 1.38629 1.38629 1.38629 1.38629 0.03019 3.57118 6.42805 1.29379 0.32052 0.14859 1.97992 83 2.02191 0.94218 2.11840 1.02834 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00538 5.57404 6.45757 0.00019 8.58559 0.43081 1.04977 84 1.92996 1.26049 1.26155 1.24439 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00414 5.56621 8.10462 0.00019 8.59291 1.85536 0.17007 85 1.47740 1.47414 1.16317 1.46837 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01180 4.47408 8.01507 0.69317 0.69313 0.26871 1.44547 86 1.79759 1.31247 0.87486 1.90902 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01344 4.32106 9.64409 0.00005 9.83986 1.01101 0.45232 87 1.66123 2.63361 0.49314 2.05908 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01179 4.44795 10.83466 0.82890 0.57364 2.39679 0.09542 88 1.80501 1.48950 0.68586 2.24066 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01366 4.30009 12.55195 0.80590 0.59183 0.49046 0.94763 89 2.23058 0.25375 2.96868 2.72908 - C = - : 1.38629 1.38629 1.38629 1.38629 0.03711 4.23942 3.81610 1.06488 0.42277 4.12571 0.01628 90 0.55823 3.42259 1.41077 1.88917 - A + - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-bact-iso.i1p0000644000543100007160000110477513054776762020276 0ustar pchanlowelabLbact-Alabact-Ala-r2-022416 (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: GGGGcugUAGCUCAGcUGGgAGAGCGCCuGcuUuuuAcGCaGGAGGUCgGgGGUUCGAuUCCccucggCUCCACCA`GD^q49T 9R CCGCCCCCq$   fCCCCCpiDEn#A  GCCCCCCJt:  [   [CCCCCCCC5ho)[ <[[CCCCC+g=% CCCCCC,V4 oCCCCMj\ V CCCCC$A\D c CCC\CgCD 2 Y=2 e CCCCC=!%>8'y?[M<!<! 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'?8V?@N?s>%~>?gB?]? ?X=<_?UD?Qd?>(#?q?.J?@:=|'?*?jmm???ҁ;?p?b??j>4?w=6??l=?>Y?>ǚ?9=Ti?W?rY?>nR? ?p?~v=@[?yvT?eK?@?Xq?PS?fD?_?x >s>G?o>2f?B=,W?8?v?L%>%@?T&>T?@>o>$=dO>?o>D=*?>>jo??+r?@=3h?9=l??\i?f?(?A'/?So?=?h> ?̏ ?z? >\?32@>cT?3?ǰ?0? ?\?U>]?T =?9~8?=Q5?8U?D?3?XJ?!>nY?J=_i?/J?΋p?>j?R?-U?.>"TP??6?=>d%?.0?e?V2?%?<>*(?|?(7?Ub>M@?V~`?̔/?=?=u==H>.?‘ ?%~=rY?E2?N?%=4̘?h =W ?/?h??Qk?!?JO?I=]Q?@??Z?X?5#?M"??Z6?)~?qN?3>U/E?ux?L=Um?I>FS?,>$H|?e5?0:?z ?Dc?I?>\?S=??*?? ?:?#?dl?t=.q=l?խ?8J?mN?>!e?v>HI?>x>5t>c]?2 &>0>pb>=>>0>r>%U>x>g g=E>?z+?| >T!> ? ?B??D>}?^U?I?>[? >D+?=(B?>Ps?@>dZ?mx?u?0S? ?[S?>Ŏ2?p">??0q???>t?>9h? =8?Y ?u;?>(?B8?Q?lI>?b???p?>">'>?>L>9|??@??gw?՛?K?H=jw>^?E=H=N{=ʒ? >M>ϴ>OP?),?3>6>׍>/?i9?>=Y? ?||?`>b$?>ؒ@?H=t?Rh?[?v>?g?fYS?Z>$>J?Dm>Do?M=^?_x>H?A?Z.?=?I?T]?F>H|D?P>p?Өu>oh?'_?=?$?k=?^s?if?_r>J>,F>7?<>0ށ?=҂P??<?+>^!?+?h?iw>H>Pm=\j>Ν>H>$4=?o>^>l?Wq?"d?)=A?ӽ=?M?O)?>Xa?e??dr=TB?4>%?g>m4?Lc ??M,>f?&bp??>$??|Y>q?>Fy?1=Po??\?9v>?@?(~?Z>\Q?" ?P'?X>??`?^>-r?v?3?=ױ>'>߄? ?͈q?\>nY?% L?m?~R>>6?o?> >>=)tt> >z>#?h>h=>??=4??ԧ=>i!`?n>?F*M?Vj?>*?T?U?x>6"i?C> ?>>1r?|>uk? > r?|V?4D?tG?$^6?8m?iT=F(?{i>>B> L?y>|y?>.a?5@?o?X>6?c??D>=to?//H? /?u>d?˳>?>;c?v>?آ>r?, ,>=vP>ul>C!>j>=vP>S>N B?'? k>K??Lg?tQ>Ӡ:?>>P?u?@j?b6>R?\?xD?>?(o=j?V>Ig?T>Uo?>?t.?s?~?9h?aȃ?F.C>P ?A>>t>Z8?(D6?EBm?/+>3i?5>1?+=b1?\_b?K?R N>D5?[?2݅?>tE?~n?L?Q> >(? ><>?aK?v!>5>?%H?>^A?z ?t?d>j[=zo>h>[=j[=Ќy>4b?<8?Д{>ߡ?0a?q_?1>|:,?_>R`? ^?ZI8?`>Ot?d9?j?V=>oV?0>l?Te|>7M?]>å{?R>G?G{?Yi?!?"?]q?>M?n>ގ+?Rf>gb?M?;v?G>/wx?&h?y?v>]?&?Xp?.*>b?kr?i?>>m`?bx?=?w>gك>}>;?$y ?vhz?.>n"?L0?۹y?>#?v>5{?>4>g>Ǖo>2c;>4> >U?>:Z&>??5;$~?5;$~?5;$~?OǀOǀOǀOǀOǀO?tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert.i1i0000644000543100007160000000150613054731304020456 0ustar pchanlowelabɳ"!NpFTRNAinf-mito-vertAlaArgAsnX*Asp?CysTGln\iGlu~GlyHis`Ile LeuTAALeuTAGeLys0MetEPhe iZPro oSerGCT SerTGA RGThr vTrp Tyr VValtRNAscan-SE-2.0/lib/models/TRNAinf-euk-iso.i1i0000644000543100007160000000273013054777036020120 0ustar pchanlowelabɳ  #NnpTRNAinf-euk-isoeuk-Alaeuk-Argeuk-AsnTeuk-Aspeuk-Cys4neuk-Gln5euk-GluKeuk-Glyeuk-Hisaeuk-Ileeuk-Leueuk-Lys7euk-Met9euk-PheQeuk-ProTeuk-SeCeuk-Ser euk-Thr (euk-Trp euk-Tyr Aeuk-Val euk-iMet|euk-Ala-r2-031616euk-Alaeuk-Arg-r2-031616euk-Argeuk-Asn-r2-031616euk-Asneuk-Asp-r2-031616euk-Aspeuk-Cys-r2-031616euk-Cyseuk-Gln-r2-031616euk-Glneuk-Glu-r2-031616euk-Glueuk-Gly-r2-031616euk-Glyeuk-His-r2-031616euk-Hiseuk-Ile-r2-031616euk-Ileeuk-Leu-r2-031616euk-Leueuk-Lys-r2-031616euk-Lyseuk-Met-r2-031616euk-Meteuk-Phe-r2-031616euk-Pheeuk-Pro-r2-031616euk-Proeuk-SeC-050216euk-SeCeuk-Ser-r2-031616euk-Sereuk-Thr-r2-031616euk-Threuk-Trp-r2-031616euk-Trpeuk-Tyr-r2-031616euk-Tyreuk-Val-r2-031616euk-Valeuk-iMet-r2-031616euk-iMettRNAscan-SE-2.0/lib/models/PSELC.cm0000644000543100007160000013070311021467310016051 0ustar pchanlowelab### cove V2 72 nodes ### node 0 type 6 1 -1 0.06250 0.56250 0.06250 0.18750 0.06250 0.06250 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 1 2 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07143 0.64286 0.07143 0.07143 0.07143 0.07143 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.12500 0.37500 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04167 0.04167 0.04167 0.04167 # MATP 0.04167 0.04167 0.04167 0.04167 # MATP 0.04167 0.37500 0.04167 0.04167 # MATP 0.04167 0.04167 0.04167 0.04167 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.16667 0.50000 0.16667 0.16667 # MATR ### node 2 type 1 3 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.42308 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 3 type 1 4 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.34615 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.11538 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 4 type 1 5 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.26923 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.11538 0.03846 0.11538 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 5 type 1 6 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.42308 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 6 type 1 7 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.19231 # MATP 0.03846 0.03846 0.11538 0.03846 # MATP 0.03846 0.19231 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 7 type 1 8 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.56250 0.18750 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.11538 0.19231 0.03846 0.03846 # MATP 0.19231 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 8 type 1 9 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.08333 0.00000 0.75000 0.00000 0.08333 0.08333 0.16667 0.00000 0.50000 0.00000 0.16667 0.16667 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04167 0.04167 0.04167 0.04167 # MATP 0.04167 0.04167 0.20833 0.12500 # MATP 0.04167 0.04167 0.04167 0.04167 # MATP 0.12500 0.04167 0.04167 0.04167 # MATP 0.16667 0.16667 0.50000 0.16667 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 9 type 2 10 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.50000 0.07143 0.35714 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 10 type 2 11 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.91667 0.00000 0.00000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.07143 0.78571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 0 12 23 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 4 13 -1 0.07143 0.78571 0.07143 0.07143 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 1 14 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.42308 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 14 type 1 15 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.11538 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.26923 0.03846 0.11538 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 15 type 1 16 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.11538 # MATP 0.03846 0.03846 0.34615 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 16 type 1 17 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.34615 0.03846 # MATP 0.03846 0.11538 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 17 type 1 18 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.11538 # MATP 0.03846 0.03846 0.19231 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.19231 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 18 type 1 19 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.07143 0.00000 0.78571 0.00000 0.07143 0.07143 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.42308 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 19 type 2 20 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.64286 0.07143 0.21429 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 20 type 2 21 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.78571 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.78571 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.91667 0.00000 0.00000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.07143 0.78571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 5 24 -1 0.38462 0.00000 0.53846 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 25 -1 0.83333 0.00000 0.00000 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.87500 0.00000 0.00000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10000 0.70000 0.10000 0.10000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 0 26 40 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 4 27 -1 0.35714 0.35714 0.07143 0.21429 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 1 28 -1 0.10000 0.50000 0.10000 0.10000 0.10000 0.10000 0.10000 0.50000 0.10000 0.10000 0.10000 0.10000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.12500 0.37500 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.05000 0.05000 0.05000 0.05000 # MATP 0.05000 0.05000 0.05000 0.05000 # MATP 0.05000 0.05000 0.05000 0.25000 # MATP 0.05000 0.05000 0.05000 0.05000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.16667 0.16667 0.16667 0.50000 # MATR ### node 28 type 1 29 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.42308 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 29 type 1 30 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.11538 # MATP 0.03846 0.03846 0.11538 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.26923 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 30 type 1 31 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.42308 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 31 type 1 32 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.42308 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 32 type 1 33 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.07143 0.00000 0.78571 0.00000 0.07143 0.07143 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.34615 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.11538 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 33 type 2 34 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.64286 0.07143 0.21429 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.07143 0.78571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.07143 0.78571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.78571 0.07143 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.78571 0.07143 0.07143 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.78571 0.07143 0.07143 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.91667 0.00000 0.00000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.78571 0.07143 0.07143 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 5 41 -1 0.69231 0.00000 0.23077 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 2 42 -1 0.63636 0.00000 0.27273 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.50000 0.16667 0.16667 0.16667 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.87500 0.00000 0.00000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.83333 0.00000 0.00000 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.12500 0.12500 0.12500 0.62500 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 0 44 57 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 4 45 -1 0.07143 0.50000 0.35714 0.07143 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 1 46 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.08333 0.58333 0.08333 0.08333 0.08333 0.08333 0.10000 0.50000 0.10000 0.10000 0.10000 0.10000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04545 0.04545 0.04545 0.04545 # MATP 0.04545 0.04545 0.04545 0.04545 # MATP 0.04545 0.04545 0.13636 0.04545 # MATP 0.04545 0.04545 0.22727 0.04545 # MATP 0.12500 0.12500 0.37500 0.37500 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 46 type 1 47 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.11538 0.03846 # MATP 0.03846 0.19231 0.03846 0.19231 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 47 type 1 48 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.19231 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.19231 0.03846 0.11538 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 48 type 1 49 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.11538 # MATP 0.03846 0.03846 0.11538 0.03846 # MATP 0.03846 0.26923 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 49 type 1 50 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.11538 0.03846 0.03846 # MATP 0.03846 0.19231 0.03846 0.19231 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 50 type 1 51 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.11538 # MATP 0.03846 0.03846 0.19231 0.11538 # MATP 0.03846 0.03846 0.03846 0.11538 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 51 type 1 52 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.26923 0.03846 # MATP 0.03846 0.03846 0.11538 0.03846 # MATP 0.03846 0.03846 0.11538 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 52 type 1 53 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.07143 0.00000 0.78571 0.00000 0.07143 0.07143 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.19231 0.03846 # MATP 0.03846 0.19231 0.03846 0.03846 # MATP 0.03846 0.03846 0.11538 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 53 type 2 54 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21429 0.50000 0.21429 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 2 55 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.50000 0.35714 0.07143 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 55 type 2 56 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.23077 0.00000 0.69231 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.35714 0.21429 0.35714 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 56 type 2 -1 -1 0.75000 0.00000 0.00000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.90000 0.00000 0.00000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.25000 0.41667 0.08333 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 5 58 -1 0.69231 0.00000 0.23077 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.27273 0.00000 0.63636 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60000 0.00000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.16667 0.50000 0.16667 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.11111 0.33333 0.11111 0.33333 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09091 0.63636 0.09091 0.09091 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10000 0.10000 0.70000 0.10000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 1 61 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07143 0.64286 0.07143 0.07143 0.07143 0.07143 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.12500 0.37500 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04167 0.04167 0.04167 0.04167 # MATP 0.04167 0.04167 0.04167 0.04167 # MATP 0.04167 0.12500 0.04167 0.29167 # MATP 0.04167 0.04167 0.04167 0.04167 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.16667 0.16667 0.16667 0.50000 # MATR ### node 61 type 1 62 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.19231 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.26923 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 62 type 1 63 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.26923 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.19231 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 63 type 1 64 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.06250 0.68750 0.06250 0.06250 0.06250 0.06250 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.42308 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 64 type 1 65 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.07143 0.00000 0.78571 0.00000 0.07143 0.07143 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.03846 0.42308 0.03846 0.03846 # MATP 0.03846 0.03846 0.03846 0.03846 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 65 type 2 66 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.07143 0.78571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 66 type 2 67 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.07143 0.78571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 67 type 2 68 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.78571 0.07143 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21429 0.07143 0.64286 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.78571 0.07143 0.07143 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.64286 0.07143 0.21429 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.91667 0.00000 0.00000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.07143 0.07143 0.78571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Ala.cm0000644000543100007160000017250412573631651021106 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Ala-2nd-align STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Ala-final-vert.cm ../Ala-2nd-align.sto COM [2] cmcalibrate --seed 208 Ala-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 2023487389 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9018 0.71864 ECMLC 0.72761 -6.00294 2.49580 1600000 581782 0.002063 ECMGC 0.30320 -52.93347 -37.31297 1600000 45599 0.008772 ECMLI 0.69967 -6.11915 2.65862 1600000 557724 0.002152 ECMGI 0.31493 -48.86172 -33.94870 1600000 43827 0.009127 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 20 41 98 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 42 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 98 - A - + MR 3 2 3 5 5 28 49 97 116 -15.061 -0.000 -14.876 -15.088 -15.980 1.853 -2.629 -2.407 -4.769 D 4 2 3 5 5 18 37 95 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 20 40 97 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 97 A U = = MP 6 5 3 10 6 28 48 96 115 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.931 -10.698 -12.232 3.528 -14.361 -15.521 -3.163 -12.274 -11.793 -2.251 -12.462 1.972 -4.568 -13.537 -11.653 -2.832 ML 7 5 3 10 6 20 39 94 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 38 94 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 17 35 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 20 40 95 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 40 95 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 96 A U = = MP 12 11 6 16 6 28 47 94 113 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.804 -14.373 -15.528 -9.831 -12.275 -11.792 0.683 -12.462 -1.257 -9.756 -13.537 -11.662 -10.830 ML 13 11 6 16 6 19 38 92 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 38 92 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 17 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 20 39 93 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 40 93 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 95 G C = = MP 18 17 6 22 6 27 45 92 111 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.384 -10.575 -14.416 0.641 -15.278 -11.960 -9.850 -14.299 -11.898 3.791 -12.166 -0.754 -10.129 -12.338 -12.174 -13.115 ML 19 17 6 22 6 19 38 90 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 38 90 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 16 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 20 39 91 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 39 91 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 94 G U = = MP 24 23 6 28 6 25 43 90 109 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.054 -3.788 -12.254 0.310 -14.385 -15.245 -9.830 -12.296 -4.075 2.524 -4.036 3.140 -9.761 -13.499 -11.669 -10.853 ML 25 23 6 28 6 19 38 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 37 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 16 34 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 39 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 39 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 93 C G = = MP 30 29 6 34 6 23 41 88 107 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.288 -9.991 -10.289 1.296 -6.820 -11.133 3.155 -4.065 -10.148 -0.778 -4.151 0.512 0.292 -10.472 0.230 -3.329 ML 31 29 6 34 6 19 37 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 37 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 16 34 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 19 38 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 38 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 92 u a = = MP 36 35 6 40 6 21 39 86 105 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 2.685 -11.630 -12.468 -9.537 -12.588 -11.733 2.848 -12.881 1.150 -2.781 ML 37 35 6 40 6 18 36 85 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 18 36 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 16 34 83 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 19 37 86 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 37 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 91 U A = = MP 42 41 6 46 4 19 37 84 103 -15.218 -15.425 -0.000 -13.839 -13.043 -13.310 -12.364 -3.562 -10.718 -12.511 -0.024 -11.631 -12.466 -9.524 -12.587 -11.689 3.838 -3.875 -8.420 -0.846 ML 43 41 6 46 4 18 35 84 104 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 17 34 84 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 16 33 83 103 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 18 36 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 18 36 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 17 35 82 101 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 49 47 6 50 3 15 33 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 17 35 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 16 34 81 100 -16.782 -0.000 1.979 -11.969 -4.139 -11.365 D 52 50 3 53 2 15 33 80 99 -8.445 -0.004 IL 53 53 3 53 2 16 34 82 101 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 15 33 80 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 40 59 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 40 59 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 22 40 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 26 G U = = MP 58 57 1 62 6 2 5 22 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.036 -10.696 -12.230 -1.924 -14.358 -15.506 -9.816 -12.273 -5.732 1.882 -12.461 3.511 -3.033 -13.530 -2.963 -1.418 ML 59 57 1 62 6 1 2 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 5 20 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -6.937 -12.508 3.825 -11.630 -12.468 -9.537 -12.588 -11.733 0.693 -3.699 -3.043 -11.270 ML 65 63 6 68 6 1 2 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 5 18 36 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.046 -13.327 -12.364 -9.564 -3.046 -12.508 -6.427 -11.630 -12.468 -9.536 -12.588 -11.729 3.976 -12.881 -2.980 -11.269 ML 71 69 6 74 6 1 2 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U A = = MP 76 75 6 80 4 2 4 16 34 -15.218 -15.425 -0.000 -13.839 -13.046 -13.327 -12.364 -9.564 -2.627 -12.508 -6.427 -11.630 -12.468 -9.536 -12.588 -11.730 3.956 -12.881 -1.705 -11.269 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 23 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 14 32 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 13 31 -16.127 -0.173 -3.146 1.932 -11.050 -2.659 -5.335 D 86 84 3 87 3 0 0 16 34 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 2 12 30 -15.954 -0.018 -6.343 -4.336 -3.260 -9.620 1.943 D 89 87 3 90 3 0 0 12 31 -14.404 -9.917 -0.002 IL 90 90 3 90 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 10 29 -15.936 -9.040 -0.003 -1.291 -4.370 -9.549 1.824 D 92 90 3 93 3 0 0 12 31 -14.536 -0.003 -8.928 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 12 31 -13.133 -0.001 -11.787 0.486 -2.221 0.310 0.195 D 95 93 3 96 3 0 0 8 26 -17.353 -5.700 -0.028 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - u - + - ML 97 96 3 99 3 1 1 11 29 -13.313 -1.783 -0.496 -0.173 -2.596 0.457 0.655 D 98 96 3 99 3 0 0 7 25 -17.325 -12.838 -0.000 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 12 -2.375 -0.311 -10.186 -0.549 -4.690 -5.560 1.703 D 101 99 3 102 3 0 0 5 10 -7.057 -0.014 -9.067 IL 102 102 3 102 3 1 1 6 12 -4.913 -0.056 -7.613 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 2.000 -12.063 -11.309 -11.396 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - G - + - ML 109 108 2 111 5 1 1 26 45 -15.061 -0.000 -14.876 -15.088 -15.980 0.349 -5.383 1.399 -3.946 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 u a = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -5.858 -9.590 -9.789 -0.370 -8.949 -10.636 0.645 -5.083 -2.320 -1.573 -10.247 0.313 2.763 -3.585 1.771 0.628 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 C G = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.934 -13.153 -3.391 -3.834 -10.675 -12.476 3.252 -3.056 -12.388 -9.267 -12.532 -11.420 1.450 -4.056 1.221 0.085 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -4.791 -12.508 -0.608 -3.603 -12.468 -9.537 -12.588 -11.733 3.913 -12.881 -2.643 -11.270 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.302 -10.662 -12.584 -2.061 -14.572 -13.524 -9.836 -12.613 -11.821 3.864 -12.374 0.148 -9.850 -13.094 -11.786 -3.531 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -11.254 -10.573 -11.262 3.027 -10.459 -12.349 -0.588 -10.886 -11.062 -0.694 -11.589 1.503 0.422 -11.676 1.035 -1.570 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -3.689 -4.133 0.412 1.342 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.713 -4.928 -13.876 1.988 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -12.716 -4.945 -13.882 1.988 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -12.733 2.000 -13.620 -11.110 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.813 -11.144 -1.045 -11.005 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -1.306 -2.861 -2.174 1.694 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 49 68 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 6 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - + - ML 166 165 2 168 3 1 5 49 68 -16.127 -0.000 -14.781 1.299 -3.662 -2.094 0.294 D 167 165 2 168 3 0 4 47 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 4 48 67 -16.782 -0.000 -1.959 -4.555 1.821 -2.590 D 170 168 3 171 2 0 3 47 66 -8.445 -0.004 IL 171 171 3 171 2 1 5 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 33 51 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 4 33 51 -16.127 -0.000 -14.781 1.962 -5.195 -4.132 -5.664 D 232 230 2 233 3 0 0 32 51 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 66 - U - + - ML 234 233 3 236 5 1 4 32 50 -15.061 -0.000 -14.876 -15.088 -15.980 -9.339 -5.384 -4.994 1.979 D 235 233 3 236 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 67 90 G C = = MP 237 236 3 241 6 2 4 31 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.100 -10.591 -13.832 0.454 -15.110 -12.160 -9.847 -13.781 -11.883 3.663 -12.204 0.973 -10.070 -12.458 -12.090 -12.487 ML 238 236 3 241 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 68 89 U G = = MP 243 242 6 247 6 2 4 29 47 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.037 -13.313 -4.150 -9.544 -10.711 -12.506 1.796 -11.626 -12.461 -2.039 -5.940 -11.704 1.097 -5.581 3.329 -11.262 ML 244 242 6 247 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 69 88 a u = = MP 249 248 6 253 6 2 2 27 45 -6.281 -5.889 -0.047 -14.710 -14.990 -8.777 -12.020 -3.216 -12.208 2.973 -14.320 -15.353 -9.760 -12.261 -11.782 2.019 -12.446 1.851 -3.489 -13.464 -11.600 -1.780 ML 250 248 6 253 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 26 44 -6.572 -6.835 -0.038 -8.491 -9.267 -8.927 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -6.096 -4.184 -9.607 -7.775 -0.113 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 86 G C = = MP 255 254 6 259 6 2 2 25 43 -15.967 -15.906 -0.075 -8.043 -14.962 -4.425 -9.953 -8.592 -9.773 2.433 -10.905 -10.372 -2.812 -10.460 -10.208 3.076 -10.456 0.545 -1.355 -9.629 -3.726 -3.482 ML 256 254 6 259 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 20 39 -14.345 -13.044 -8.841 -9.523 -9.540 -0.007 IL 259 259 5 259 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 85 G C = = MP 261 260 6 265 4 2 2 23 41 -15.115 -15.322 -0.030 -5.622 -5.130 -5.497 -11.249 0.216 -12.723 -12.423 -7.879 -11.627 -5.172 3.823 -11.694 -1.680 -3.531 -11.532 -9.849 -2.296 ML 262 260 6 265 4 1 1 23 42 -6.169 -6.351 -0.083 -5.081 -1.238 -1.483 -0.979 1.439 MR 263 260 6 265 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 20 39 -11.502 -11.184 -0.902 -1.108 IL 265 265 5 265 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - a - + - ML 267 266 6 269 3 1 1 21 39 -4.743 -0.059 -8.680 0.722 -4.268 0.224 0.177 D 268 266 6 269 3 0 0 19 38 -13.203 -0.692 -1.393 IL 269 269 3 269 3 1 1 22 40 -1.778 -0.501 -9.239 0.000 0.000 0.000 0.000 [ MATL 69 ] 76 - U - + - ML 270 269 3 272 3 1 1 19 38 -16.097 -0.000 -14.751 -5.536 -5.366 -3.825 1.957 D 271 269 3 272 3 0 0 18 37 -11.984 -0.891 -1.118 IL 272 272 3 272 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 77 - A - + - ML 273 272 3 275 3 1 1 18 37 -16.113 -0.000 -14.767 1.780 -3.711 -1.384 -3.252 D 274 272 3 275 3 0 0 17 36 -10.884 -0.667 -1.435 IL 275 275 3 275 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 78 - a - + - ML 276 275 3 278 3 1 1 17 36 -6.158 -0.077 -4.731 0.884 -4.558 0.782 -1.352 D 277 275 3 278 3 0 0 16 35 -9.496 -0.103 -3.888 IL 278 278 3 278 3 1 1 17 36 -4.803 -0.061 -7.503 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - A - + - ML 279 278 3 281 3 1 1 16 35 -16.072 -0.043 -5.104 1.153 -4.074 -1.908 0.536 D 280 278 3 281 3 0 0 15 34 -12.823 -0.439 -1.932 IL 281 281 3 281 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 81 - G - + - ML 282 281 3 284 3 1 1 15 34 -4.861 -0.087 -5.391 -0.284 -1.894 1.362 -1.556 D 283 281 3 284 3 0 0 9 27 -12.828 -2.201 -0.354 IL 284 284 3 284 3 1 1 18 36 -1.424 -0.676 -9.317 0.000 0.000 0.000 0.000 [ MATL 74 ] 84 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -3.100 -1.951 -1.591 1.719 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ala-2nd-align LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Ala-final-vert.cm ../Ala-2nd-align.sto NSEQ 1085 EFFN 6.104946 CKSUM 2023487389 STATS LOCAL MSV -8.8759 0.71864 STATS LOCAL VITERBI -9.5958 0.71864 STATS LOCAL FORWARD -3.5516 0.71864 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29583 1.73074 1.41641 1.18223 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 0.00000 * 1 0.51560 3.27601 1.15170 3.01629 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 2 0.28999 3.89075 1.58988 3.59903 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 3 2.17503 3.59470 0.18980 3.44817 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 4 1.86420 2.96904 0.31058 2.80339 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 5 1.78913 0.94247 1.69071 1.35154 5 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 6 2.73765 0.96044 2.50102 0.75385 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 7 2.91744 1.85333 2.73278 0.32272 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 8 3.77309 3.56406 4.31854 0.06681 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 9 0.06852 4.11661 3.48436 3.95007 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 10 2.11364 2.87693 0.30260 2.47696 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 11 3.27040 0.31582 3.04251 1.68684 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 12 4.79127 3.35399 4.71521 0.05362 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 13 4.68220 3.26625 4.59277 0.05925 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 14 0.04416 4.43933 4.07321 4.24237 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 15 0.12268 3.65726 2.87318 3.40721 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11360 4.44793 2.34675 1.46634 0.26236 1.09861 0.40547 16 2.82605 2.65769 3.44026 0.17604 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03500 4.36022 3.83421 1.46634 0.26236 2.32001 0.10344 17 2.11935 2.58956 3.11949 0.27357 17 U + - _ 1.38629 1.38629 1.38629 1.38629 1.35560 4.35134 0.31564 1.46634 0.26236 0.20337 1.69267 18 1.14988 1.78291 1.50023 1.23067 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06931 3.39679 3.39679 1.46634 0.26236 3.34668 0.03584 19 1.26234 1.78816 1.47287 1.13796 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.29717 3.43173 1.49276 1.46634 0.26236 4.05213 0.01754 20 1.25347 1.68986 1.77502 1.02037 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10573 2.80841 3.21802 1.03246 0.44026 0.03360 3.40989 21 0.04425 4.43737 4.07134 4.24037 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02371 4.44679 4.44679 1.46634 0.26236 1.03762 0.43742 22 0.07036 4.73672 3.05667 4.41237 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 23 0.06249 4.84765 3.17826 4.50355 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 24 1.88814 3.13089 0.27956 3.01902 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 25 2.89871 1.15601 2.62116 0.58439 26 U = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 26 1.20061 2.94506 0.56788 2.52988 27 G + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 27 1.80012 1.53141 1.65495 0.85006 28 u = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 28 2.13350 0.89903 2.00545 1.07876 29 c = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 29 3.72365 2.07746 3.53979 0.19652 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 30 2.16259 3.07336 0.24689 2.85628 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 31 1.21218 1.73081 1.31836 1.35582 32 a = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 32 2.02067 2.35781 1.40134 0.64143 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 33 3.53419 3.21959 4.06263 0.09032 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 34 3.53614 3.22256 4.06469 0.09009 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 35 3.83089 4.82921 0.04360 4.34418 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 36 4.20037 0.05425 4.67016 3.55993 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 37 0.21761 3.46034 2.07883 3.24251 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 38 1.94956 2.33943 2.48088 0.38918 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 39 1.75056 1.68816 1.38175 0.94078 40 u = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 40 3.15783 0.33773 2.87906 1.67181 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 41 0.22602 3.69944 1.93872 3.39108 42 A = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 42 1.49543 2.16972 0.70474 1.78737 43 g = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 43 1.20541 1.94686 1.15144 1.42077 44 g = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 44 0.71456 2.25774 2.13843 1.24422 45 a + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 45 2.17700 3.09103 0.26752 2.57851 46 G + - , 1.38629 1.38629 1.38629 1.38629 1.45220 4.44793 0.28204 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 47 1.80303 1.30592 1.07728 1.49719 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 48 1.80069 1.30664 1.07815 1.49672 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 49 1.79965 1.30696 1.07854 1.49651 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 50 1.79924 1.30709 1.07869 1.49643 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 51 1.79915 1.30712 1.07873 1.49641 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 52 1.79920 1.30710 1.07871 1.49642 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 57 1.73045 1.22012 1.16203 1.53827 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 58 1.73036 1.22016 1.16207 1.53824 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 59 1.73035 1.22017 1.16207 1.53824 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 60 1.73048 1.22011 1.16202 1.53828 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 61 1.73089 1.21994 1.16187 1.53840 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 62 1.73177 1.21956 1.16155 1.53866 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03056 3.50330 64 0.10016 3.61893 3.26661 3.49471 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 65 3.08917 2.94810 3.45660 0.13871 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 66 2.10736 3.38739 0.21668 3.23261 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 67 2.72593 1.26635 2.42486 0.57241 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 68 1.05446 2.74441 0.69130 2.44864 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.04845 3.84880 3.65012 0.87876 0.53665 1.09861 0.40547 69 1.35563 2.56702 0.56556 2.32880 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.06012 4.43354 3.06878 1.46634 0.26236 1.44000 0.27040 70 1.81029 2.70146 0.37952 2.46395 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.04011 4.39832 3.61115 1.46634 0.26236 0.79420 0.60137 71 1.02245 2.21864 1.40128 1.25440 73 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05493 3.23037 4.27536 0.70403 0.68239 0.73416 0.65375 72 2.88607 2.83323 3.20262 0.16874 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02406 4.43234 4.43234 1.46634 0.26236 0.92241 0.50676 73 0.30183 2.76040 2.17339 2.48314 77 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02385 4.44084 4.44084 1.46634 0.26236 0.95426 0.48629 74 0.92944 2.46087 1.04733 1.77790 78 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06380 3.81094 3.22689 0.85266 0.55561 0.97263 0.47495 75 0.81039 2.23136 2.07423 1.13234 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04653 4.41966 3.39842 1.46634 0.26236 0.66496 0.72215 76 1.47362 2.24852 0.66915 1.87599 81 G + - _ 1.38629 1.38629 1.38629 1.38629 0.06929 3.28666 3.52129 0.78933 0.60541 1.26739 0.33068 77 2.26287 2.20598 2.38488 0.36571 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05579 4.40820 3.16797 1.46634 0.26236 0.96375 0.48039 78 2.76294 0.44787 2.51206 1.52877 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.02498 4.39543 4.39543 1.46634 0.26236 0.34375 1.23480 79 2.60324 0.69792 2.36520 1.09536 86 c = - > 1.38629 1.38629 1.38629 1.38629 0.02372 4.44624 4.44624 1.46634 0.26236 1.01092 0.45237 80 2.79381 1.00353 2.54895 0.70509 88 u = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 81 1.66598 2.57743 0.42308 2.52574 89 G = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 82 3.47210 0.32809 3.19969 1.57081 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 83 0.38385 2.87348 1.71685 2.49336 91 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 84 1.02368 2.67735 0.72268 2.44721 92 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 85 1.65583 2.03519 0.79524 1.48308 93 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 86 3.01455 0.87579 2.74419 0.75482 94 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 87 3.67276 0.23885 3.41959 1.86864 95 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 88 3.80136 1.87903 3.67433 0.22370 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 89 3.32533 2.18818 3.09896 0.21465 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 90 0.23443 2.70034 2.55777 2.74387 98 A + - : 1.38629 1.38629 1.38629 1.38629 0.01191 4.43616 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Ala.cm0000644000543100007160000017242712573631164021375 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Ala STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:49:00 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Ala.sto COM [2] cmcalibrate --seed 208 Ala_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1278061781 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.6253 0.71868 ECMLC 0.73888 -5.94874 2.46417 1600000 600929 0.001997 ECMGC 0.32870 -50.69147 -35.84231 1600000 52700 0.007590 ECMLI 0.77609 -5.30966 2.65396 1600000 579859 0.002069 ECMGI 0.36506 -45.21656 -32.03312 1600000 49229 0.008125 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 118 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 18 39 100 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 40 100 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 24 48 99 118 -13.126 -0.001 -12.941 -13.153 -14.045 1.892 -9.349 -1.816 -9.099 D 4 2 3 5 5 15 36 97 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 39 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 G U = = MP 6 5 3 10 6 25 48 98 117 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 2.892 -12.435 -13.590 -7.893 -10.336 -9.854 -0.894 -10.524 3.004 -7.817 -11.599 -9.723 -8.892 ML 7 5 3 10 6 17 37 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 37 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 34 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 38 97 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 A U = = MP 12 11 6 16 6 24 46 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.891 -12.435 -13.590 -7.893 -10.336 -9.854 -1.419 -10.524 -0.382 -7.817 -11.599 -9.723 -8.892 ML 13 11 6 16 6 17 37 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 37 94 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 34 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 38 95 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 38 95 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 G C = = MP 18 17 6 22 6 23 44 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.645 -8.648 -12.948 -0.891 -13.457 -9.946 -7.933 -12.762 -9.988 3.868 -10.228 -0.236 -8.243 -10.360 -10.303 -11.697 ML 19 17 6 22 6 16 37 92 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 37 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 38 93 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 38 93 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 G C = = MP 24 23 6 28 6 22 43 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.164 -8.668 -11.884 0.930 -13.172 -10.244 -7.917 -11.838 -9.959 3.694 -10.282 0.187 -8.138 -10.537 -10.155 -10.540 ML 25 23 6 28 6 16 37 90 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 36 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 91 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 38 91 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 A U = = MP 30 29 6 34 6 20 41 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.104 -12.435 -13.590 -7.893 -10.336 -9.854 0.420 -10.524 2.480 -7.818 -11.599 -9.723 -1.083 ML 31 29 6 34 6 16 36 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 36 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 33 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 90 C G = = MP 36 35 6 40 6 18 39 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 3.043 -9.692 -10.530 -7.599 -10.650 -9.795 2.081 -10.943 1.810 -9.332 ML 37 35 6 40 6 15 36 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 35 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 33 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 36 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 89 U A = = MP 42 41 6 46 4 16 37 86 105 -13.280 -13.487 -0.001 -11.901 -11.107 -11.380 -10.426 -7.618 -8.779 -10.573 -1.535 -9.693 -10.529 -7.592 -10.650 -9.770 3.966 -10.944 -6.482 -9.331 ML 43 41 6 46 4 14 35 86 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 34 86 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 33 85 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 36 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 35 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 14 35 84 103 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 12 33 82 102 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 35 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 13 34 83 102 -14.843 -0.000 1.977 -9.979 -4.053 -9.424 D 52 50 3 53 2 12 33 82 101 -8.445 -0.004 IL 53 53 3 53 2 13 34 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 33 82 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 13 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 13 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G U = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 -1.851 -12.435 -13.583 -7.893 -10.337 -3.116 1.658 -10.524 3.636 -7.818 -11.598 -9.723 -8.893 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.926 -9.692 -10.530 -7.600 -10.650 -9.795 -1.696 -10.943 -1.077 -9.332 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U A = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 15 34 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 33 -14.190 -0.266 -2.573 1.971 -9.926 -3.691 -9.398 D 86 84 3 87 3 0 0 16 34 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 13 32 -13.925 -0.044 -5.070 -4.294 -3.851 -7.590 1.954 D 89 87 3 90 3 0 0 13 32 -13.047 -8.560 -0.004 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 12 31 -13.882 -6.985 -0.012 -1.222 -7.591 -8.588 1.833 D 92 90 3 93 3 0 0 13 32 -13.243 -0.086 -4.106 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 13 32 -11.785 -0.001 -10.439 0.690 -4.149 0.630 -0.353 D 95 93 3 96 3 0 0 9 28 -15.310 -6.241 -0.019 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - g - + - ML 97 96 3 99 3 1 1 12 30 -11.862 -1.128 -0.884 -0.252 -3.849 0.712 0.539 D 98 96 3 99 3 0 0 8 27 -15.291 -10.804 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 8 15 -2.063 -0.397 -9.391 -1.049 -3.818 -4.664 1.768 D 101 99 3 102 3 0 0 4 11 -15.473 -0.002 -9.865 IL 102 102 3 102 3 1 1 8 15 -3.701 -0.134 -6.401 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.523 -8.383 1.337 -4.882 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 g u = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.607 -5.607 -5.601 1.528 -5.580 -6.451 -0.492 -4.221 -0.984 0.305 -6.239 2.022 0.790 -2.413 -0.370 1.884 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 u a = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.965 -11.168 -10.345 -2.803 -8.727 -10.530 1.733 -9.628 -10.429 -7.259 -10.579 -9.401 2.986 -3.435 1.979 -0.837 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 0.729 -9.692 -10.530 -7.599 -10.650 -9.795 3.797 -10.943 -1.253 -9.332 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.531 -8.714 -10.875 -2.398 -12.755 -11.120 -7.906 -10.895 -9.905 3.951 -10.399 -2.645 -7.969 -10.978 -9.923 -2.594 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 -8.760 -10.293 3.723 -12.400 -13.560 -7.862 -10.334 -9.855 -0.124 -10.523 -0.442 -1.779 -11.594 -2.901 -0.506 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -7.096 -4.512 -3.524 1.949 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.351 -9.094 0.532 -9.009 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -3.769 -3.187 -2.210 1.848 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 6 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - U - + - ML 166 165 2 168 3 1 6 50 69 -14.190 -0.000 -12.844 -0.167 -4.577 -3.360 1.570 D 167 165 2 168 3 0 4 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 5 49 68 -14.843 -0.000 -8.730 -10.482 1.984 -4.560 D 170 168 3 171 2 0 4 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 5 50 70 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 33 51 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 4 33 51 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 232 230 2 233 3 0 0 32 51 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 66 - U - + - ML 234 233 3 236 5 1 4 32 50 -13.126 -0.001 -12.941 -13.153 -14.045 -11.317 -10.026 -12.774 1.999 D 235 233 3 236 5 0 0 31 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 32 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 67 88 G C = = MP 237 236 3 241 6 2 4 31 49 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.462 -8.655 -12.491 -0.619 -13.355 -10.042 -7.929 -12.375 -9.978 3.781 -10.247 0.667 -8.208 -10.419 -10.252 -11.190 ML 238 236 3 241 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 68 87 U G = = MP 243 242 6 247 6 2 4 29 47 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.102 -11.379 -10.423 -7.612 -8.775 -10.569 1.770 -9.689 -10.526 -0.944 -10.647 -9.773 0.268 -4.216 3.432 -9.327 ML 244 242 6 247 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 69 86 A U = = MP 249 248 6 253 6 2 4 27 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -4.665 -10.294 3.662 -12.435 -13.590 -7.893 -10.336 -9.854 -0.337 -10.524 1.321 -7.818 -11.599 -9.724 -8.892 ML 250 248 6 253 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 70 85 A U = = MP 255 254 6 259 6 2 3 25 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.402 -12.435 -13.590 -7.893 -10.336 -9.854 0.788 -10.524 1.882 -7.818 -11.599 -9.723 -8.892 ML 256 254 6 259 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 71 84 G C = = MP 261 260 6 265 4 2 2 23 41 -13.280 -13.487 -0.083 -4.161 -3.739 -8.672 -11.036 0.922 -12.749 -10.760 -7.792 -11.075 -3.809 3.757 -10.340 -1.241 -7.913 -10.762 -9.865 -9.673 ML 262 260 6 265 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 72 - A - + - ML 267 266 6 269 3 1 1 21 39 -4.498 -0.066 -12.762 1.361 -8.400 0.375 -2.927 D 268 266 6 269 3 0 0 19 37 -11.477 -0.025 -5.869 IL 269 269 3 269 3 1 1 22 41 -1.545 -0.616 -7.726 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 19 37 -14.190 -0.007 -7.789 -2.876 -4.525 -2.093 1.842 D 271 269 3 272 3 0 0 18 37 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - A - + - ML 273 272 3 275 3 1 1 18 36 -14.184 -0.000 -12.838 1.427 -3.124 -0.188 -1.648 D 274 272 3 275 3 0 0 17 35 -8.187 -0.270 -2.579 IL 275 275 3 275 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - g - + - ML 276 275 3 278 3 1 1 17 35 -5.863 -0.025 -12.844 0.005 -3.014 0.564 0.480 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 17 35 -3.434 -0.163 -6.134 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 16 34 -14.190 -0.059 -4.647 1.507 -8.194 -0.116 -2.114 D 280 278 3 281 3 0 0 15 34 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - G - + - ML 282 281 3 284 3 1 1 15 33 -4.719 -0.122 -4.531 -0.616 -2.628 1.232 -0.256 D 283 281 3 284 3 0 0 10 28 -11.009 -6.522 -0.016 IL 284 284 3 284 3 1 1 17 35 -1.476 -0.655 -7.584 0.000 0.000 0.000 0.000 [ MATL 74 ] 83 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -3.422 -1.814 -1.993 1.753 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Ala LENG 90 MAXL 175 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:49:00 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Ala.sto NSEQ 282 EFFN 3.980255 CKSUM 1278061781 STATS LOCAL MSV -9.1520 0.71868 STATS LOCAL VITERBI -9.6730 0.71868 STATS LOCAL FORWARD -3.4379 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31820 1.73290 1.40977 1.16663 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 0.00000 * 1 0.88588 3.33406 0.68032 3.08898 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 2 0.25961 3.55897 1.80833 3.31725 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 3 2.45123 3.46780 0.16600 3.33584 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 4 1.92135 3.07572 0.28248 2.92763 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 5 0.91774 2.72493 0.81605 2.37673 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 6 2.71488 0.80932 2.49204 0.90169 6 c = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 7 3.52533 2.12255 3.34326 0.20394 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 8 3.23589 3.09854 3.77175 0.11368 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 9 0.10924 3.63168 3.12381 3.41048 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 10 2.06901 3.20204 0.24350 3.01335 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 11 3.47831 0.22147 3.28921 2.03623 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 12 3.79661 2.55394 3.62709 0.13561 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 13 3.79205 2.55344 3.62461 0.13585 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 14 0.07765 3.89019 3.55679 3.65983 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 15 0.11737 3.57878 3.03765 3.35561 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.15497 4.21187 2.04997 1.46634 0.26236 1.09861 0.40547 16 2.51757 2.47641 3.08910 0.23603 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05373 4.09092 3.33575 1.46634 0.26236 2.36909 0.09824 17 1.92273 2.34736 2.74711 0.36520 17 U + - _ 1.38629 1.38629 1.38629 1.38629 1.07614 4.07188 0.44309 1.46634 0.26236 0.23464 1.56472 18 1.09067 1.88475 1.37882 1.34605 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06818 3.41261 3.41261 1.46634 0.26236 3.30624 0.03734 19 1.26655 1.83854 1.37875 1.18008 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.25496 3.42802 1.64715 1.46634 0.26236 3.68052 0.02553 20 1.33096 1.70757 1.84693 0.92445 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12312 2.56135 3.25349 0.81163 0.58723 0.04588 3.10463 21 0.07765 3.89019 3.55679 3.65983 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 22 0.15478 3.81514 2.38701 3.52493 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 23 0.15486 3.81416 2.38683 3.52390 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 24 2.41121 3.43556 0.17638 3.22425 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 25 3.10161 1.29853 2.98567 0.45952 26 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 26 1.09993 2.79821 0.66654 2.37836 27 G + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 27 1.53893 1.61466 1.28550 1.17145 28 u = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 28 2.10528 1.26573 1.93810 0.79368 29 u = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 29 3.04503 1.47103 2.82730 0.41016 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 30 2.02576 2.80807 0.30939 2.60517 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 31 0.65987 2.33990 1.36799 2.02400 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 32 2.59340 2.54164 2.92518 0.23213 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 33 3.23589 3.09854 3.77175 0.11368 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 34 3.23589 3.09854 3.77175 0.11368 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 35 3.33724 4.28755 0.07324 3.84666 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 36 3.61847 0.09511 4.16464 3.02882 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 37 0.59666 2.81026 1.19597 2.44471 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 38 2.28136 2.31868 2.54958 0.32665 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 39 2.38221 1.57943 2.12881 0.54028 40 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 40 2.91351 0.37014 2.61716 1.70338 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 41 0.48583 2.99083 1.29461 2.80404 42 A = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 42 1.13037 2.09863 0.92916 1.83523 43 g = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 43 1.53906 1.65761 1.38146 1.06824 44 u = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 44 1.49601 2.19651 2.37616 0.55883 45 U + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 45 3.18776 4.07722 0.09181 3.52314 46 G + - , 1.38629 1.38629 1.38629 1.38629 1.21614 4.21187 0.37279 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 47 1.80322 1.30587 1.07721 1.49723 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 48 1.80099 1.30655 1.07804 1.49678 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 49 1.80001 1.30685 1.07840 1.49658 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 50 1.79966 1.30696 1.07854 1.49651 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 51 1.79960 1.30698 1.07856 1.49650 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 52 1.79968 1.30695 1.07853 1.49652 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 57 1.73091 1.21993 1.16187 1.53840 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 58 1.73078 1.21998 1.16191 1.53837 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 59 1.73073 1.22000 1.16193 1.53835 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 60 1.73082 1.21997 1.16190 1.53838 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 61 1.73115 1.21982 1.16178 1.53848 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 62 1.73193 1.21949 1.16149 1.53871 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04213 3.18806 64 0.07765 3.89019 3.55679 3.65983 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 65 3.23588 3.09854 3.77175 0.11368 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 66 2.30061 3.30227 0.19760 3.16278 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 67 2.63639 1.23031 2.24493 0.63442 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 68 0.49140 3.20300 1.21503 2.97814 69 A = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 69 0.68748 3.05971 0.93485 2.85400 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 70 1.75129 2.69521 0.38440 2.55019 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.06973 4.21187 2.94626 1.46634 0.26236 1.09861 0.40547 71 0.65099 2.53466 1.31068 2.04374 72 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06211 3.10508 4.17342 0.78352 0.61027 0.44733 1.01980 72 2.19994 2.38351 2.50391 0.33519 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03316 4.21187 4.02887 1.46634 0.26236 1.09861 0.40547 73 0.66706 2.23197 1.58935 1.74064 76 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03018 4.20889 4.20889 1.46634 0.26236 0.98041 0.47026 74 1.27321 2.05067 1.28369 1.15707 77 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04214 3.63282 4.21187 0.89393 0.52601 1.09861 0.40547 75 0.57143 2.49981 1.55752 1.94824 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05829 4.21187 3.17467 1.46634 0.26236 1.09861 0.40547 76 1.45751 2.13808 0.88249 1.44582 80 g + - _ 1.38629 1.38629 1.38629 1.38629 0.08850 3.20369 3.12154 0.83013 0.57269 1.57304 0.23245 77 2.09034 2.04522 2.38352 0.42346 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03187 4.15522 4.15522 1.46634 0.26236 0.35352 1.21138 78 2.75551 0.45904 2.50583 1.50092 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 79 3.07265 1.52740 2.85433 0.38712 85 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 80 3.18848 1.82350 2.99305 0.29146 86 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 81 1.78450 2.36912 0.43304 2.40769 87 G = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 82 3.38811 0.28120 3.12003 1.78858 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 83 0.23169 3.51943 1.97089 3.27381 89 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 84 1.34539 2.66296 0.53393 2.48263 90 G = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 85 2.77617 1.48837 2.52630 0.45882 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 86 3.16548 0.36343 2.89125 1.57496 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 87 3.55060 0.21968 3.29777 2.02836 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 88 3.52645 2.28264 3.35395 0.18197 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 89 3.30837 1.95400 3.12983 0.25104 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 90 0.20167 3.22076 2.39450 2.96640 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01516 4.19694 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-euk-iso0000644000543100007160000433571513054777002017450 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME euk-Ala ACC euk-Ala-r2-031616 STATES 230 NODES 61 CLEN 72 W 624 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 05:42:02 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ala-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Ala-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ala-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ala-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ala-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ala-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ala-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2222 EFFN 2222.000000 CKSUM 1304273726 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.9881 0.71881 ECMLC 0.67436 -7.64628 1.67243 1600000 643238 0.001866 ECMGC 0.33350 -44.66971 -32.47775 1600000 23329 0.017146 ECMLI 0.67259 -7.10970 2.11627 1600000 594458 0.002019 ECMGI 0.35281 -41.69919 -30.17506 1600000 23325 0.017149 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 624 1302 -16.045 -17.290 -0.023 -5.981 IL 1 1 2 1 4 26 51 626 1304 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 27 52 627 1304 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 185 - A - - MR 3 2 3 5 5 32 53 625 1303 -5.358 -0.036 -15.886 -16.098 -16.989 1.803 -4.797 -1.478 -3.116 D 4 2 3 5 5 23 46 622 1300 -10.721 -5.707 -8.348 -9.779 -0.035 IR 5 5 3 5 5 32 54 627 1305 -0.595 -1.569 -12.625 -10.792 -11.898 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 181 G C - - MP 6 5 3 10 6 31 52 624 1302 -17.001 -16.940 -0.000 -15.717 -11.799 -16.392 -2.374 -4.399 -1.327 -3.514 -7.471 -5.029 -1.030 -11.475 -3.376 3.805 -5.995 -2.802 -1.174 -4.343 -5.614 -9.751 ML 7 5 3 10 6 24 46 622 1300 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 25 48 623 1300 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 23 46 622 1300 -15.072 -13.770 -9.567 -10.249 -10.267 -0.004 IL 10 10 5 10 6 26 49 624 1301 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 26 50 623 1301 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 180 G C - - MP 12 11 6 16 6 29 50 622 1300 -17.001 -16.940 -0.038 -9.740 -5.314 -16.391 -6.236 -1.127 -7.219 -5.990 -5.004 -3.286 0.410 -6.035 -4.739 3.712 -7.093 -1.322 -1.784 -2.460 -7.286 -7.856 ML 13 11 6 16 6 23 44 620 1298 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 23 46 621 1299 -7.778 -6.507 -0.715 -6.485 -1.619 -4.699 -0.408 0.905 -1.144 -0.119 D 15 11 6 16 6 23 46 622 1300 -15.072 -0.041 -9.567 -10.249 -10.267 -5.329 IL 16 16 5 16 6 23 46 622 1299 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 27 50 622 1300 -1.460 -0.658 -11.098 -9.265 -10.371 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 177 G U - - MP 18 17 6 22 6 28 49 620 1298 -6.199 -16.925 -0.020 -15.702 -15.981 -16.376 -4.609 -6.957 -4.198 -0.582 -7.986 -11.384 -1.900 -10.606 -1.295 0.833 -2.652 3.536 -2.032 -10.644 -0.511 -4.079 ML 19 17 6 22 6 22 43 618 1295 -8.463 -8.809 -1.927 -0.482 -8.659 -6.188 -0.673 -1.041 -0.534 1.135 MR 20 17 6 22 6 24 45 620 1298 -13.117 -11.846 -7.754 -11.824 -0.009 -10.037 1.987 -7.619 -7.099 -5.424 D 21 17 6 22 6 19 41 615 1293 -9.909 -8.608 -4.405 -5.087 -5.104 -0.167 IL 22 22 5 22 6 26 48 620 1298 -1.015 -8.838 -0.996 -10.493 -11.270 -10.930 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 23 46 620 1297 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 176 G C - - MP 24 23 6 28 6 26 47 618 1296 -16.986 -16.925 -0.006 -7.977 -15.982 -16.377 -7.357 -4.645 -6.617 -1.306 -4.938 -7.330 2.170 -4.802 -6.437 3.388 -11.455 -2.005 -2.162 -6.992 -8.969 -9.736 ML 25 23 6 28 6 21 42 616 1294 -8.184 -8.530 -3.244 -0.203 -8.380 -5.909 -1.604 -2.827 1.729 -2.214 MR 26 23 6 28 6 23 44 619 1297 -13.117 -11.846 -6.632 -11.824 -0.017 -10.037 -7.364 1.992 -7.834 -6.397 D 27 23 6 28 6 19 41 615 1293 -9.909 -8.608 -1.010 -5.087 -5.104 -1.180 IL 28 28 5 28 6 22 44 618 1295 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 22 45 618 1295 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 175 a u - - MP 30 29 6 34 6 24 45 616 1294 -16.981 -16.920 -0.001 -10.693 -15.976 -16.372 -4.869 -1.596 -7.591 2.458 -9.939 -5.591 0.232 -7.413 -4.633 2.447 -8.526 0.365 0.902 -3.013 -2.960 -5.019 ML 31 29 6 34 6 20 41 615 1292 -10.267 -10.613 -1.474 -5.021 -10.463 -0.720 1.968 -5.391 -4.825 -5.080 MR 32 29 6 34 6 22 43 618 1296 -13.109 -11.838 -7.746 -11.816 -0.009 -10.029 -8.026 -7.202 -9.058 1.995 D 33 29 6 34 6 19 40 613 1291 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 22 43 616 1294 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 22 43 616 1294 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 174 U A - - MP 36 35 6 40 6 22 43 614 1292 -16.983 -16.922 -0.010 -8.208 -15.978 -8.132 -5.115 -5.904 -8.531 1.247 -5.506 -6.356 -0.414 -7.091 -7.776 0.510 -9.166 -2.294 3.001 -3.942 0.249 0.921 ML 37 35 6 40 6 21 42 614 1292 -7.748 -8.094 -0.342 -2.503 -7.944 -5.473 -0.994 -1.082 -1.696 1.442 MR 38 35 6 40 6 21 42 617 1295 -13.109 -11.838 -7.746 -11.816 -0.009 -10.029 1.994 -7.993 -7.266 -7.402 D 39 35 6 40 6 19 40 613 1291 -12.796 -11.495 -7.292 -7.974 -7.991 -0.021 IL 40 40 5 40 6 21 42 614 1292 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 21 42 614 1292 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 173 G C - - MP 42 41 6 46 4 20 41 612 1290 -7.881 -5.534 -0.038 -14.821 -6.326 -2.703 -10.758 1.491 -6.619 -11.353 -2.526 -6.601 -7.103 3.305 -7.963 -0.656 1.164 -6.976 -6.613 -4.626 ML 43 41 6 46 4 20 41 615 1293 -0.160 -7.081 -3.647 -5.811 1.949 -4.727 -4.186 -4.445 MR 44 41 6 46 4 20 41 616 1294 -0.017 -10.161 -8.028 -7.089 -7.355 1.992 -7.824 -6.388 D 45 41 6 46 4 19 40 613 1291 -1.147 -0.962 -6.956 -5.210 IL 46 46 5 46 4 20 41 615 1293 -0.404 -5.119 -2.213 -13.495 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 40 612 1289 -2.167 -0.365 -9.800 0.000 0.000 0.000 0.000 [ MATL 9 ] 15 - U - - - ML 48 47 6 50 3 18 39 610 1288 -17.160 -0.000 -15.814 -10.849 -5.867 -6.451 1.989 D 49 47 6 50 3 16 37 609 1287 -6.174 -1.687 -0.566 IL 50 50 3 50 3 18 39 611 1289 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 16 - A - - - ML 51 50 3 53 2 17 38 609 1287 -17.816 -0.000 1.429 -12.001 0.370 -6.090 D 52 50 3 53 2 16 37 608 1286 -8.445 -0.004 IL 53 53 3 53 2 17 38 610 1288 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 16 37 608 1286 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 3 204 448 -17.160 -0.000 -15.814 IL 56 56 2 56 3 1 4 205 448 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 124 - A - - - ML 57 56 2 59 3 1 3 204 448 -7.224 -0.104 -3.998 1.745 -3.291 -3.881 -1.068 D 58 56 2 59 3 0 1 189 433 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 205 448 -4.778 -0.062 -7.478 0.000 0.000 0.000 0.000 [ MATL 44 ] 126 - G - - - ML 60 59 3 62 3 1 2 204 447 -3.383 -0.145 -15.721 -3.195 -6.019 1.816 -1.501 D 61 59 3 62 3 0 1 100 344 -14.585 -0.003 -8.976 IL 62 62 3 62 3 1 5 234 477 -0.109 -3.780 -14.864 0.000 0.000 0.000 0.000 [ MATL 45 ] 145 - G - - - ML 63 62 3 65 3 1 1 27 46 -7.250 -0.043 -5.449 -1.552 -6.661 1.857 -5.274 D 64 62 3 65 3 0 0 26 45 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 2 27 46 -4.754 -0.063 -7.454 0.000 0.000 0.000 0.000 [ MATL 46 ] 147 - U - - - ML 66 65 3 68 3 1 2 26 45 -17.127 -0.000 -15.781 -1.931 -0.320 -4.249 1.528 D 67 65 3 68 3 0 0 26 45 -13.141 -0.008 -7.532 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 148 - C - - - ML 69 68 3 71 5 1 2 25 44 -16.093 -0.000 -15.909 -16.121 -17.012 -1.353 1.771 -3.710 -3.081 D 70 68 3 71 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 149 170 C G - - MP 72 71 3 76 6 2 2 24 43 -7.050 -16.963 -0.011 -15.740 -16.019 -16.414 -11.205 -4.349 -4.454 -0.570 -4.711 -7.321 3.414 -6.620 -11.096 1.534 -7.951 -2.669 -0.273 -4.704 -0.761 -8.587 ML 73 71 3 76 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 24 42 -6.818 -7.080 -0.032 -8.736 -9.512 -9.172 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 151 169 u a - - MP 78 77 6 82 6 2 2 22 41 -7.008 -16.963 -0.011 -13.456 -16.019 -16.414 -6.611 -7.451 -5.935 -0.379 -4.411 -7.287 2.573 -6.880 -8.529 0.093 -10.107 -1.780 2.770 -4.052 -0.158 -4.434 ML 79 77 6 82 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 22 40 -6.857 -7.120 -0.031 -8.775 -9.552 -9.212 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 153 168 G C - - MP 84 83 6 88 6 2 2 20 39 -17.024 -16.963 -0.000 -15.740 -13.216 -16.414 -4.934 -3.551 -10.809 -0.822 -11.940 -9.188 1.152 -9.002 -11.247 3.638 -6.187 -1.027 -7.271 -8.664 -9.013 -3.008 ML 85 83 6 88 6 1 1 24 43 -6.545 -6.891 -1.606 -0.758 -6.741 -4.271 0.166 -0.708 0.475 -0.191 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 154 167 G C - - MP 90 89 6 94 6 2 2 18 37 -17.024 -16.963 -0.000 -15.739 -16.019 -16.414 -10.990 -3.957 -7.856 -1.332 -11.939 -7.044 -0.417 -11.498 -4.965 3.841 -11.492 -2.451 -2.609 -5.448 -4.584 -9.773 ML 91 89 6 94 6 1 1 24 42 -6.545 -6.891 -0.961 -1.300 -6.741 -4.271 0.166 -0.708 0.475 -0.191 MR 92 89 6 94 6 1 1 23 42 -7.311 -6.040 -1.121 -6.018 -1.152 -4.232 0.001 0.372 -0.694 0.121 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 155 166 G C - - MP 96 95 6 100 4 2 2 16 35 -16.251 -16.458 -0.001 -11.309 -15.004 -11.579 -17.580 -4.853 -16.610 -5.183 -10.883 -16.922 -5.321 3.969 -5.190 -3.828 -2.879 -6.174 -13.343 -16.824 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 156 - U - - - ML 102 101 6 104 3 1 1 13 31 -7.055 -0.011 -15.814 -1.550 -6.938 -6.818 1.865 D 103 101 6 104 3 0 0 16 35 -7.738 -0.383 -2.130 IL 104 104 3 104 3 1 1 14 32 -4.931 -0.056 -7.631 0.000 0.000 0.000 0.000 [ MATL 54 ] 158 - U - - - ML 105 104 3 107 3 1 1 12 30 -17.160 -0.000 -15.814 -6.605 -4.020 -11.341 1.974 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 159 - C - - - ML 108 107 3 110 3 1 1 10 29 -17.160 -0.000 -15.814 -11.220 1.969 -6.259 -3.792 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 160 - G - - - ML 111 110 3 113 3 1 1 9 27 -17.160 -0.000 -15.814 0.574 -6.043 1.311 -6.137 D 112 110 3 113 3 0 0 15 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 161 - A - - - ML 114 113 3 116 3 1 1 7 13 -7.183 -0.010 -15.814 1.974 -6.667 -4.207 -6.982 D 115 113 3 116 3 0 0 6 12 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 8 13 -4.815 -0.060 -7.515 0.000 0.000 0.000 0.000 [ MATL 58 ] 163 - U - - - ML 117 116 3 119 3 1 1 6 11 -7.122 -0.011 -10.390 -1.197 -2.180 -4.197 1.718 D 118 116 3 119 3 0 0 5 10 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 6 12 -4.870 -0.058 -7.570 0.000 0.000 0.000 0.000 [ MATL 59 ] 165 - c - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -3.328 0.926 -1.966 0.803 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 585 1262 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 0 15 585 1262 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 23 41 -0.000 -15.153 -14.560 -15.200 [ MATP 15 ] 17 36 G C - - MP 127 126 1 131 6 2 2 23 41 -17.024 -16.963 -0.000 -15.740 -16.019 -16.414 -12.449 -5.334 -12.454 -3.880 -13.898 -13.421 -4.771 -12.839 -3.954 3.470 -5.550 2.159 -9.230 -5.850 -5.323 -2.382 ML 128 126 1 131 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 18 35 C G - - MP 133 132 6 137 6 2 2 21 39 -17.024 -16.963 -0.000 -15.740 -16.019 -16.414 -14.039 -14.298 -5.182 -4.480 -5.149 -13.530 3.546 -12.645 -13.473 -4.182 -13.601 -12.650 1.987 -13.884 -2.324 -12.273 ML 134 132 6 137 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 19 34 U A - - MP 139 138 6 143 6 2 2 19 37 -17.024 -6.522 -0.016 -15.740 -16.019 -16.414 -6.242 -5.176 -11.322 0.337 -5.823 -12.166 1.127 -10.840 -7.902 -0.181 -11.693 -8.589 3.516 -7.543 -2.866 -5.562 ML 140 138 6 143 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 19 38 -6.466 -0.025 -9.977 -8.145 -9.250 0.000 0.000 0.000 0.000 [ MATP 18 ] 20 32 C G - - MP 145 144 6 149 4 2 2 17 35 -16.251 -16.458 -0.000 -14.872 -14.080 -14.362 -13.397 -10.598 -1.684 -4.105 3.334 -6.817 0.267 -10.570 -6.242 -12.766 -4.413 -13.914 -1.174 1.937 ML 146 144 6 149 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 21 - A - - - ML 151 150 6 153 3 1 1 14 32 -6.736 -0.014 -15.814 1.992 -12.955 -6.599 -6.524 D 152 150 6 153 3 0 0 18 36 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 14 33 -5.224 -0.045 -7.924 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - G - - - ML 154 153 3 156 3 1 1 13 31 -17.160 -0.000 -15.814 -1.985 -4.958 1.865 -3.784 D 155 153 3 156 3 0 0 18 36 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 24 - U - - - ML 157 156 3 159 3 1 1 11 29 -1.914 -0.445 -15.814 -1.693 -2.632 -1.710 1.689 D 158 156 3 159 3 0 0 15 34 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 11 29 -9.943 -0.002 -12.643 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - G - - - ML 160 159 3 162 3 1 1 10 28 -17.160 -0.000 -15.814 -5.938 -6.376 1.990 -12.425 D 161 159 3 162 3 0 0 16 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - G - - - ML 163 162 3 165 3 1 1 9 26 -17.160 -0.000 -13.157 -5.393 -6.522 1.984 -6.868 D 164 162 3 165 3 0 0 15 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - U - - - ML 166 165 3 168 3 1 1 7 14 -2.693 -0.242 -15.814 -4.970 -3.212 -4.634 1.934 D 167 165 3 168 3 0 0 5 12 -6.758 -0.888 -1.150 IL 168 168 3 168 3 1 1 7 13 -4.267 -0.077 -11.941 0.000 0.000 0.000 0.000 [ MATL 25 ] 31 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.942 -12.189 -5.371 -2.918 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 0 569 1247 -17.160 -0.000 -15.814 IL 174 174 2 174 3 1 1 570 1248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 37 - G - - - ML 175 174 2 177 5 1 1 569 1247 -16.093 -0.000 -15.909 -16.121 -17.012 -0.443 -5.067 1.616 -2.557 D 176 174 2 177 5 0 0 566 1244 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 569 1247 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 38 123 C G - - MP 178 177 3 182 6 2 2 568 1246 -7.258 -16.963 -0.010 -15.740 -16.019 -16.414 -6.653 -13.303 -5.945 -6.023 -3.274 -5.292 3.145 -4.364 -5.532 -9.123 -5.068 -11.167 2.701 -6.423 -1.450 -11.708 ML 179 177 3 182 6 1 1 565 1243 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 565 1243 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 558 1236 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 567 1245 -6.621 -6.884 -0.036 -8.539 -9.315 -8.976 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 567 1245 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 40 122 u a - - MP 184 183 6 188 6 2 2 566 1244 -17.024 -16.963 -0.000 -15.740 -16.019 -16.414 -6.312 -4.512 -7.402 1.346 -6.854 -2.961 0.988 -2.211 -5.790 1.237 -9.037 -2.160 2.916 -0.869 -3.076 -2.044 ML 185 183 6 188 6 1 1 563 1241 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 563 1241 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 556 1234 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 565 1243 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 565 1243 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 41 121 c g - - MP 190 189 6 194 6 2 2 564 1242 -17.024 -16.963 -0.000 -15.740 -16.019 -16.414 -6.189 -11.023 -4.686 -6.849 -4.486 -12.166 2.793 -7.789 -6.431 0.606 -7.941 -6.420 2.718 -8.172 -2.398 -0.652 ML 191 189 6 194 6 1 1 561 1239 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 562 1239 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 555 1233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 563 1241 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 563 1241 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 42 120 G C - - MP 196 195 6 200 6 2 2 562 1240 -17.024 -16.963 -0.019 -15.740 -6.233 -16.414 -10.992 -3.609 -10.811 0.515 -11.942 -11.407 0.824 -8.111 -5.024 3.056 -11.495 2.060 -7.273 -7.243 -2.637 -5.254 ML 197 195 6 200 6 1 1 559 1237 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 560 1238 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 553 1231 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 561 1239 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 561 1239 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 43 119 C G - - MP 202 201 6 206 4 2 2 560 1238 -16.231 -16.438 -0.000 -14.852 -12.742 -12.593 -4.655 0.808 -4.473 -13.023 3.719 -6.429 -12.456 -3.530 -5.895 -10.306 -0.662 -12.812 -2.036 -11.205 ML 203 201 6 206 4 1 1 558 1236 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 560 1238 -10.260 -0.031 -7.156 -6.217 1.990 -7.116 -6.444 -6.612 D 205 201 6 206 4 0 0 551 1229 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 559 1237 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 559 1237 -5.700 -0.032 -8.400 0.000 0.000 0.000 0.000 [ MATL 34 ] 44 - U - - - ML 208 207 6 210 3 1 1 558 1236 -17.160 -0.000 -15.814 -5.872 -0.389 -6.980 1.683 D 209 207 6 210 3 0 0 548 1225 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 558 1235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 45 - U - - - ML 211 210 3 213 3 1 1 557 1235 -17.160 -0.000 -15.814 -5.854 -4.118 -5.247 1.963 D 212 210 3 213 3 0 0 542 1220 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 556 1234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 46 - g - - - ML 214 213 3 216 3 1 1 556 1234 -17.160 -0.000 -15.814 -0.018 -0.021 0.055 -0.018 D 215 213 3 216 3 0 0 533 1210 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 554 1232 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 47 - u - - - ML 217 216 3 219 3 1 1 555 1233 -3.520 -0.132 -15.814 0.001 -0.001 -0.002 0.002 D 218 216 3 219 3 0 0 513 1191 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 552 1230 -8.345 -0.136 -3.520 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - c - - - ML 220 219 3 222 3 1 1 554 1232 -17.149 -0.000 -15.803 -0.119 0.309 -0.122 -0.118 D 221 219 3 222 3 0 0 378 1056 -11.577 -7.090 -0.011 IL 222 222 3 222 3 1 1 551 1229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - A - - - ML 223 222 3 225 3 1 1 553 1231 -1.660 -0.549 -15.803 1.950 -5.562 -3.441 -5.378 D 224 222 3 225 3 0 0 299 977 -11.577 -7.090 -0.011 IL 225 225 3 225 3 1 1 595 1272 -0.039 -5.221 -18.105 0.000 0.000 0.000 0.000 [ MATL 40 ] 117 - U - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 -0.323 -3.149 -5.962 1.619 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Ala ACC euk-Ala-r2-031616 LENG 72 MAXL 615 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 05:42:03 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ala-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Ala-r2-031616.sto NSEQ 2222 EFFN 17.287327 CKSUM 1304273726 STATS LOCAL MSV -8.2131 0.71881 STATS LOCAL VITERBI -8.9798 0.71881 STATS LOCAL FORWARD -3.7363 0.71881 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55653 1.43841 1.21433 1.36680 1.38629 1.38629 1.38629 1.38629 0.01375 4.98660 4.98660 1.46634 0.26236 0.00000 * 1 2.17368 2.76513 0.28302 2.66256 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01398 4.98660 4.95400 1.46634 0.26236 1.09861 0.40547 2 2.25251 2.31974 0.31781 2.67618 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03570 4.98638 3.56687 1.46634 0.26236 1.07700 0.41645 3 1.87441 2.17162 0.46862 2.23776 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02566 3.99264 4.97855 0.96087 0.48217 1.81403 0.17793 4 2.29470 1.49954 0.49778 2.68686 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01386 4.97855 4.97855 1.46634 0.26236 1.79685 0.18131 5 1.20056 2.23995 0.82212 1.87726 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01655 4.97884 4.65278 1.46634 0.26236 1.81120 0.17848 6 1.71650 1.88121 1.83123 0.67790 8 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01697 4.97618 4.61300 1.46634 0.26236 0.36750 1.17916 7 1.62077 2.96262 0.48685 1.99501 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04445 3.30435 4.99711 1.23549 0.34346 0.87168 0.54172 8 3.99201 3.72565 4.31667 0.05753 15 U - - , 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 9 0.41087 4.49716 1.17101 4.15200 16 A - - , 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 10 2.44644 3.17154 0.20431 2.87792 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 11 3.76306 0.39140 3.58746 1.29824 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 12 2.25206 1.55523 2.24250 0.54907 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 13 3.35417 0.53888 2.31246 1.26356 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 14 0.01936 5.40919 4.83281 4.99994 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02170 4.21810 5.00007 0.75140 0.63810 1.09861 0.40547 15 2.49801 3.72483 0.15574 3.27415 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 16 2.35170 2.74351 2.54630 0.27171 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27395 1.45717 5.00007 0.05689 2.89500 1.09861 0.40547 17 4.41898 5.25307 0.02309 5.19476 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 18 4.24641 5.19407 0.02789 4.87402 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01365 5.00007 4.98848 1.46634 0.26236 1.09861 0.40547 19 3.51338 3.08348 3.82293 0.10254 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15704 1.97619 4.99999 0.14045 2.03233 1.09090 0.40934 20 0.06322 4.40678 4.10923 3.42188 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 21 2.01239 3.29871 0.50831 1.47888 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.02303 4.13322 5.00007 0.69834 0.68798 1.09861 0.40547 22 0.60036 2.34952 1.44097 2.12635 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 23 1.38167 3.73455 0.36022 3.59600 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 24 3.25005 0.47911 2.94556 1.24021 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 25 1.69851 3.49765 0.32448 2.75084 37 G - - , 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 26 2.92069 0.72639 2.64346 0.93818 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.39714 5.00007 0.87592 0.53868 1.09861 0.40547 27 1.63957 1.62731 1.63134 0.88235 40 u - - < 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 28 2.83620 0.92155 2.01330 0.89184 41 u - - < 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 29 1.95280 2.21460 0.36888 2.85735 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.02514 5.00007 4.01243 1.46634 0.26236 1.09861 0.40547 30 2.11965 0.38134 2.80766 1.99047 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.01372 4.98865 4.98865 1.46634 0.26236 0.55670 0.85120 31 3.52572 1.75664 4.07561 0.24723 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 32 3.62776 3.31735 3.96133 0.08541 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 33 1.32439 1.47336 1.44400 1.31342 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 34 1.31607 1.46306 1.47379 1.30479 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08478 2.59636 5.00007 0.17189 1.84563 1.09861 0.40547 35 1.37127 1.29683 1.53883 1.35408 49 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02017 5.00007 4.32512 1.46634 0.26236 1.09861 0.40547 36 0.06843 4.10787 3.45410 4.01266 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.33267 1.28659 4.99355 3.60716 0.02750 1.37724 0.29072 37 1.72451 2.91450 3.66128 0.29866 117 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02531 4.00591 4.99355 0.62878 0.76195 0.70229 0.68409 38 2.19298 2.97592 0.34773 2.03159 119 G - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 39 3.23470 0.66453 2.08621 1.13335 120 C - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 40 1.03276 2.11612 0.85233 2.33245 121 g - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 41 1.03174 1.64844 1.51907 1.45952 122 a - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 42 1.02703 2.83047 0.66619 2.66956 123 G - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 43 0.23193 3.03227 3.29519 2.10591 124 A - - , 1.38629 1.38629 1.38629 1.38629 0.07528 4.38738 2.81204 0.86866 0.54389 1.09861 0.40547 44 2.83418 3.77776 0.18552 2.43402 126 G - - , 1.38629 1.38629 1.38629 1.38629 0.09998 2.43015 4.94525 2.58954 0.07802 0.20235 1.69723 45 2.41593 4.23763 0.13459 3.80770 145 G - - , 1.38629 1.38629 1.38629 1.38629 0.03934 4.39564 3.64037 0.87480 0.53948 1.09861 0.40547 46 2.43775 1.64616 3.39558 0.37639 147 U - - , 1.38629 1.38629 1.38629 1.38629 0.01384 4.98037 4.98037 1.46634 0.26236 0.41441 1.08096 47 2.36677 0.21036 3.60196 2.67871 148 C - - , 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 48 2.43066 0.61607 1.63294 1.73384 149 C - - < 1.38629 1.38629 1.38629 1.38629 0.02012 4.32912 5.00007 0.82648 0.57552 1.09861 0.40547 49 2.38679 1.03350 2.04906 0.85930 151 u - - < 1.38629 1.38629 1.38629 1.38629 0.02031 4.31481 5.00007 0.81643 0.58341 1.09861 0.40547 50 2.19818 2.07263 0.34477 2.90484 153 G - - < 1.38629 1.38629 1.38629 1.38629 0.01364 5.00007 4.98871 1.46634 0.26236 1.09861 0.40547 51 2.27623 2.65151 0.26268 2.85079 154 G - - < 1.38629 1.38629 1.38629 1.38629 0.01357 4.99999 4.99999 1.46634 0.26236 1.09106 0.40926 52 3.83039 4.67602 0.04718 4.19518 155 G - - < 1.38629 1.38629 1.38629 1.38629 0.01388 5.00007 4.95542 1.46634 0.26236 1.09861 0.40547 53 2.45940 3.57230 4.09514 0.13953 156 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.33169 4.99976 0.82852 0.57394 1.06907 0.42057 54 3.93349 3.43820 4.53733 0.06443 158 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 55 4.63234 0.04682 4.66826 3.62605 159 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 56 0.99875 3.97100 0.52900 3.74604 160 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 57 0.03903 4.69263 3.95328 4.61326 161 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01952 4.37427 5.00007 0.85900 0.55093 1.09861 0.40547 58 2.20426 2.62923 3.50280 0.23899 163 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02042 4.35426 4.91195 0.84444 0.56177 1.09861 0.40547 59 2.64608 0.81141 2.60654 0.88904 165 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01358 4.99945 4.99945 1.46634 0.26236 1.04074 0.43571 60 4.23724 0.05864 4.55740 3.44137 166 C - - > 1.38629 1.38629 1.38629 1.38629 0.01363 5.00007 4.99114 1.46634 0.26236 1.09861 0.40547 61 3.10448 0.30009 2.51394 2.01404 167 C - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00001 5.00001 1.46634 0.26236 1.10160 0.40398 62 3.23435 0.40183 1.99963 1.85704 168 C - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00001 5.00001 1.46634 0.26236 1.09267 0.40845 63 1.01471 2.22801 0.89074 2.12531 169 g - - > 1.38629 1.38629 1.38629 1.38629 0.01357 5.00007 5.00007 1.46634 0.26236 1.09861 0.40547 64 2.04341 1.71347 0.53834 2.24002 170 G - - > 1.38629 1.38629 1.38629 1.38629 0.04093 3.57642 4.41231 0.58914 0.80924 1.09861 0.40547 65 2.09874 0.55529 2.80412 1.41502 173 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01414 4.99466 4.92509 1.46634 0.26236 0.98824 0.46558 66 0.96379 1.97092 1.53188 1.33523 174 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01508 4.99698 4.80293 1.46634 0.26236 1.17099 0.37115 67 2.04743 0.95359 2.08585 1.01783 175 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01362 4.99585 4.99585 1.46634 0.26236 0.88322 0.53350 68 2.85610 0.55074 1.46993 1.99478 176 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01380 4.99915 4.96743 1.46634 0.26236 1.13506 0.38773 69 2.34161 1.52529 1.88806 0.62567 177 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02707 3.91380 4.99893 1.83079 0.17470 1.01119 0.45222 70 2.94582 0.33565 2.27500 2.04197 180 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01375 4.98660 4.98660 1.46634 0.26236 1.09861 0.40547 71 2.72133 0.32136 2.44399 2.10177 181 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03500 3.59122 4.98654 1.16938 0.37187 1.09861 0.40547 72 0.18674 3.52601 2.36432 3.05962 185 A - - : 1.38629 1.38629 1.38629 1.38629 0.00690 4.97969 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Arg ACC euk-Arg-r2-031616 STATES 233 NODES 62 CLEN 73 W 637 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 06:17:27 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Arg-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Arg-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Arg-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Arg-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Arg-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Arg-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Arg-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2318 EFFN 2318.000000 CKSUM 482676187 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.3095 0.71878 ECMLC 0.69438 -6.46143 2.24874 1600000 508011 0.002362 ECMGC 0.33465 -45.51526 -33.22878 1600000 24418 0.016381 ECMLI 0.63248 -6.82896 2.59976 1600000 466749 0.002571 ECMGI 0.34057 -42.37032 -30.29373 1600000 24450 0.016360 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 637 1322 -16.106 -17.351 -0.000 -13.805 IL 1 1 2 1 4 21 44 640 1324 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 46 640 1325 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 200 - g - - MR 3 2 3 5 5 30 54 639 1324 -5.606 -0.030 -15.969 -16.182 -17.073 -0.167 -6.273 0.854 0.366 D 4 2 3 5 5 18 40 636 1321 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 25 54 641 1326 -0.596 -1.568 -12.462 -10.630 -11.736 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 196 G C - - MP 6 5 3 10 6 30 53 638 1323 -17.085 -17.024 -0.000 -15.800 -16.080 -16.475 -8.325 -5.578 -10.869 -2.364 -11.999 -6.530 -0.827 -6.175 -8.005 3.369 -7.686 2.079 -0.733 -5.992 -9.073 -7.129 ML 7 5 3 10 6 20 42 635 1320 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 42 635 1319 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 18 38 629 1314 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 20 43 637 1321 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 44 637 1321 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 195 c g - - MP 12 11 6 16 6 29 51 636 1321 -17.085 -17.024 -0.001 -11.339 -16.080 -16.475 -8.559 -7.507 -9.133 0.592 -1.987 -12.208 2.856 -6.733 -9.032 -0.893 -7.482 2.343 0.228 -11.546 -2.486 -6.643 ML 13 11 6 16 6 20 42 634 1318 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 20 41 633 1318 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 18 38 628 1312 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 20 43 635 1319 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 43 635 1319 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 194 C G - - MP 18 17 6 22 6 27 49 634 1319 -17.084 -17.023 -0.001 -15.800 -10.527 -16.475 -11.422 -11.126 -6.654 -3.391 -6.156 -6.494 3.604 -8.081 -11.278 0.622 -11.788 -5.394 1.062 -11.603 -4.226 -9.997 ML 19 17 6 22 6 20 43 632 1317 -7.410 -7.756 -0.448 -2.165 -7.606 -5.136 1.410 -1.447 -1.168 -0.914 MR 20 17 6 22 6 20 41 631 1316 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 38 626 1311 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 20 43 633 1317 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 43 633 1317 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 193 C G - - MP 24 23 6 28 6 26 47 632 1317 -17.084 -17.023 -0.000 -12.861 -16.079 -16.474 -7.668 -11.082 -6.916 -3.024 -6.341 -8.470 3.275 -3.963 -11.239 -1.428 -7.740 -2.987 1.844 -11.564 1.006 -8.036 ML 25 23 6 28 6 19 41 630 1315 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 20 42 629 1314 -8.539 -7.268 -3.176 -0.588 -2.380 -5.459 -1.371 1.507 -2.179 -0.861 D 27 23 6 28 6 17 37 625 1310 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 42 631 1316 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 42 631 1315 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 192 c g - - MP 30 29 6 34 6 24 45 630 1315 -7.505 -7.272 -0.017 -15.799 -16.079 -16.474 -9.893 -7.271 -7.755 0.154 -4.461 -5.230 2.782 -5.873 -10.036 1.333 -10.589 1.353 0.804 -3.751 -0.342 -2.166 ML 31 29 6 34 6 20 42 629 1313 -8.103 -8.449 -0.261 -2.858 -8.299 -5.828 -0.339 1.078 -1.517 -0.418 MR 32 29 6 34 6 19 40 627 1312 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 17 37 624 1309 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 21 44 629 1314 -6.446 -6.709 -0.041 -8.364 -9.141 -8.801 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 21 44 629 1314 -5.827 -0.040 -9.338 -7.506 -8.612 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 190 c g - - MP 36 35 6 40 6 22 43 628 1313 -17.085 -17.024 -0.000 -12.808 -16.080 -16.475 -11.348 -8.814 -8.821 1.073 -6.769 -8.958 2.283 -6.077 -11.216 0.718 -11.730 1.683 1.800 -11.533 -2.890 -0.932 ML 37 35 6 40 6 19 40 626 1311 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 19 39 626 1310 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 17 37 623 1308 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 19 41 627 1312 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 41 627 1312 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 189 G C - - MP 42 41 6 46 4 20 41 626 1311 -16.311 -16.518 -0.000 -14.933 -11.050 -4.333 -10.869 0.870 -11.996 -7.517 0.519 -6.668 -1.527 3.338 0.279 -1.918 -1.039 -7.627 -2.041 -9.834 ML 43 41 6 46 4 18 39 625 1310 -4.141 -4.324 -0.372 -3.053 0.011 -0.880 0.723 -0.325 MR 44 41 6 46 4 17 38 624 1309 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 16 37 623 1308 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 19 40 626 1310 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 40 625 1310 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 48 47 6 50 3 18 39 624 1309 -17.221 -0.000 -15.875 -6.773 -6.531 -12.176 1.993 D 49 47 6 50 3 16 37 622 1307 -6.174 -1.687 -0.566 IL 50 50 3 50 3 18 39 624 1309 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 51 50 3 53 2 17 38 623 1308 -17.877 -0.000 -0.938 -6.597 1.789 -6.558 D 52 50 3 53 2 16 37 622 1307 -8.445 -0.004 IL 53 53 3 53 2 17 38 623 1308 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 16 37 622 1307 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 3 166 348 -17.221 -0.000 -15.875 IL 56 56 2 56 3 1 5 168 351 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 128 - A - - - ML 57 56 2 59 3 1 3 166 348 -3.690 -0.261 -3.506 1.446 -4.946 -0.931 -0.479 D 58 56 2 59 3 0 2 175 358 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 6 180 362 -0.159 -3.264 -14.196 0.000 0.000 0.000 0.000 [ MATL 45 ] 141 - G - - - ML 60 59 3 62 3 1 2 154 337 -4.029 -0.091 -15.742 -4.594 -3.387 1.935 -4.652 D 61 59 3 62 3 0 3 178 361 -0.338 -2.268 -9.528 IL 62 62 3 62 3 1 5 181 364 -0.145 -3.385 -15.011 0.000 0.000 0.000 0.000 [ MATL 46 ] 163 - g - - - ML 63 62 3 65 3 1 1 27 46 -4.445 -0.152 -4.200 0.767 -3.754 0.961 -1.852 D 64 62 3 65 3 0 0 26 45 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 3 27 46 -7.490 -0.009 -10.191 0.000 0.000 0.000 0.000 [ MATL 47 ] 165 - U - - - ML 66 65 3 68 3 1 2 26 45 -17.140 -0.000 -15.794 -6.164 -1.118 -3.170 1.772 D 67 65 3 68 3 0 0 26 44 -14.444 -0.003 -8.835 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 166 - U - - - ML 69 68 3 71 5 1 2 25 44 -16.154 -0.000 -15.969 -16.182 -17.073 -6.290 -0.085 -5.868 1.598 D 70 68 3 71 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 167 188 G C - - MP 72 71 3 76 6 2 2 24 43 -17.085 -6.996 -0.012 -15.800 -13.309 -16.475 -11.050 -5.177 -6.702 -0.809 -11.999 -11.464 1.576 -9.191 -6.557 3.236 -5.840 1.529 -4.707 -6.023 -6.783 -7.056 ML 73 71 3 76 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 23 42 -6.080 -0.033 -9.591 -7.759 -8.865 0.000 0.000 0.000 0.000 [ MATP 50 ] 168 186 c g - - MP 78 77 6 82 6 2 2 22 41 -17.085 -17.024 -0.000 -15.800 -16.080 -16.475 -11.382 -11.083 -11.382 -0.070 -7.936 -12.226 2.683 -6.792 -8.623 -0.211 -11.753 -3.077 2.603 -5.402 0.595 -5.822 ML 79 77 6 82 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 24 43 -7.303 -6.032 -1.130 -6.011 -1.144 -4.224 0.876 -0.750 -0.482 -0.227 D 81 77 6 82 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 169 185 G C - - MP 84 83 6 88 6 2 2 20 39 -7.392 -17.024 -0.009 -15.800 -16.080 -16.475 -5.435 -5.730 -10.871 2.138 -12.002 -7.430 -1.837 -5.268 -5.766 3.475 -11.555 -3.963 -7.333 -6.557 -9.076 -5.578 ML 85 83 6 88 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 20 39 -6.552 -6.815 -0.038 -8.470 -9.246 -8.907 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 171 184 G C - - MP 90 89 6 94 6 2 2 18 37 -17.085 -17.024 -0.001 -11.139 -16.080 -16.475 -11.782 -1.431 -11.655 -0.332 -12.755 -6.846 -3.269 -12.330 -6.011 3.870 -12.045 -5.208 -5.362 -5.923 -6.004 -10.622 ML 91 89 6 94 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 172 183 G C - - MP 96 95 6 100 4 2 2 16 35 -16.311 -16.518 -0.000 -14.932 -15.067 -5.213 -17.656 -9.136 -16.672 -5.119 -10.943 -16.991 -6.403 3.963 -13.198 -3.860 -1.963 -6.096 -13.404 -16.908 ML 97 95 6 100 4 1 1 23 41 -4.803 -4.985 -1.551 -0.758 -0.775 -0.908 -1.458 1.333 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 173 - U - - - ML 102 101 6 104 3 1 1 13 31 -7.294 -0.009 -15.874 -6.931 -6.973 -6.922 1.991 D 103 101 6 104 3 0 0 16 34 -7.946 -0.325 -2.337 IL 104 104 3 104 3 1 1 14 32 -4.769 -0.062 -7.469 0.000 0.000 0.000 0.000 [ MATL 55 ] 175 - U - - - ML 105 104 3 107 3 1 1 12 30 -17.221 -0.000 -15.875 -11.016 -5.983 -6.788 1.991 D 106 104 3 107 3 0 0 17 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 176 - C - - - ML 108 107 3 110 3 1 1 10 29 -7.278 -0.009 -15.875 -6.824 1.980 -6.066 -5.009 D 109 107 3 110 3 0 0 15 33 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 12 30 -4.785 -0.062 -7.485 0.000 0.000 0.000 0.000 [ MATL 57 ] 178 - G - - - ML 111 110 3 113 3 1 1 9 28 -17.221 -0.000 -15.875 -1.966 -6.949 1.901 -12.365 D 112 110 3 113 3 0 0 15 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 179 - A - - - ML 114 113 3 116 3 1 1 8 26 -7.297 -0.009 -15.875 1.990 -5.925 -6.673 -12.337 D 115 113 3 116 3 0 0 13 31 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 9 28 -4.767 -0.062 -7.467 0.000 0.000 0.000 0.000 [ MATL 59 ] 181 - G - - - ML 117 116 3 119 3 1 1 7 25 -17.221 -0.000 -15.875 -1.346 -0.512 1.302 -1.188 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 182 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -4.555 0.601 -7.085 1.283 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 15 597 1282 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 1 15 597 1282 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 1 40 74 -0.000 -15.214 -14.621 -15.261 [ MATP 15 ] 11 31 G C - - MP 127 126 1 131 6 2 3 40 74 -17.085 -17.024 -0.000 -15.800 -16.080 -16.475 -14.947 -4.529 -16.989 -5.661 -16.616 -12.829 -10.943 -16.560 -4.807 3.882 -5.031 0.165 -11.298 -13.288 -13.380 -15.950 ML 128 126 1 131 6 1 1 38 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 38 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 35 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 40 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 39 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 C G - - MP 133 132 6 137 6 2 3 38 72 -17.085 -17.024 -0.000 -15.800 -12.222 -16.475 -14.139 -14.421 -6.123 -4.597 -4.830 -5.109 3.842 -6.035 -13.561 -10.628 -5.266 -12.823 0.460 -13.974 -3.003 -12.363 ML 134 132 6 137 6 1 1 37 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 36 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 34 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 38 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 37 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 29 g c - - MP 139 138 6 143 6 2 3 36 70 -17.084 -17.024 -0.000 -15.800 -16.080 -16.475 -8.245 -4.614 -5.085 -1.659 -7.500 -7.715 2.133 -8.024 -7.443 2.880 -6.260 -5.220 1.902 -11.496 -3.922 -9.948 ML 140 138 6 143 6 1 1 35 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 35 68 -7.636 -6.365 -0.814 -6.343 -1.477 -4.557 -0.174 -1.105 0.965 -0.522 D 142 138 6 143 6 0 0 32 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 36 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 35 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 28 c g - - MP 145 144 6 149 4 2 3 34 68 -16.312 -16.519 -0.000 -14.933 -0.371 -3.805 -11.375 -2.838 1.518 -2.716 2.789 -7.822 -6.001 -6.054 -11.748 -4.568 2.166 -5.486 -1.439 -2.898 ML 146 144 6 149 4 1 1 34 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 33 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 32 65 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 35 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 34 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 151 150 6 153 3 1 2 32 66 -17.221 -0.000 -15.875 1.993 -6.799 -6.562 -12.378 D 152 150 6 153 3 0 0 30 64 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 33 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - - - ML 154 153 3 156 3 1 2 31 65 -17.221 -0.000 -15.875 1.570 -7.139 0.014 -6.240 D 155 153 3 156 3 0 0 29 62 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 32 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 157 156 3 159 3 1 2 30 64 -1.937 -0.437 -15.875 -3.188 -3.275 -6.865 1.918 D 158 156 3 159 3 0 0 28 61 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 2 30 63 -9.981 -0.002 -12.681 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - G - - - ML 160 159 3 162 3 1 2 29 62 -17.221 -0.000 -15.875 -6.248 -13.521 1.995 -12.493 D 161 159 3 162 3 0 0 27 60 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 30 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 163 162 3 165 3 1 2 28 61 -17.221 -0.000 -15.875 -5.584 -13.509 1.988 -6.502 D 164 162 3 165 3 0 0 26 59 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 29 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - a - - - ML 166 165 3 168 3 1 1 27 60 -4.658 -0.729 -1.485 0.899 -1.370 -6.714 0.798 D 167 165 3 168 3 0 0 24 57 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 32 65 -0.795 -1.241 -11.211 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 169 168 3 171 3 1 1 7 26 -16.583 -0.000 -15.237 -1.791 -1.682 -3.603 1.730 D 170 168 3 171 3 0 0 6 24 -17.155 -0.000 -11.547 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.716 -6.827 -2.427 -0.944 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 0 581 1266 -17.221 -0.002 -9.776 IL 177 177 2 177 3 1 1 583 1267 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - - - ML 178 177 2 180 5 1 1 581 1266 -16.152 -0.000 -15.968 -16.180 -17.072 0.305 -6.052 1.382 -2.811 D 179 177 2 180 5 0 0 580 1264 -7.154 -0.141 -6.416 -4.790 -4.703 IL 180 180 3 180 5 1 1 581 1266 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 127 U A - - MP 181 180 3 185 6 2 2 580 1265 -17.085 -7.237 -0.010 -15.800 -16.080 -16.475 -11.415 -4.854 -3.835 -1.811 -5.437 -12.250 1.812 -7.835 -6.107 -4.217 -11.782 -8.686 3.099 -11.596 1.771 -5.641 ML 182 180 3 185 6 1 1 577 1262 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 577 1261 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 571 1255 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 579 1264 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 579 1264 -5.860 -0.039 -9.371 -7.538 -8.644 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 125 C G - - MP 187 186 6 191 6 2 2 578 1263 -6.244 -17.024 -0.019 -15.800 -16.080 -16.475 -7.238 -11.081 -6.705 -0.850 -5.260 -6.648 3.074 -10.900 -11.238 1.325 -5.259 -3.998 2.075 -6.709 -2.726 -9.958 ML 188 186 6 191 6 1 1 575 1260 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 575 1259 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 569 1254 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 578 1263 -7.651 -0.037 -5.831 -9.569 -10.345 -10.005 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 577 1262 -6.787 -0.020 -10.298 -8.466 -9.571 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 123 u a - - MP 193 192 6 197 6 2 2 576 1261 -17.085 -17.024 -0.000 -15.800 -16.080 -16.475 -11.296 -4.811 -11.286 1.138 -3.034 -12.101 1.067 -1.511 -7.708 1.979 -2.883 -1.699 2.758 -9.243 -4.739 -9.921 ML 194 192 6 197 6 1 1 574 1258 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 572 1257 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 568 1252 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 575 1260 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 575 1260 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 122 G C - - MP 199 198 6 203 6 2 2 574 1259 -17.085 -17.024 -0.000 -15.800 -16.080 -16.475 -11.051 -2.156 -6.617 -2.682 -12.000 -11.465 -0.463 -7.550 -6.333 3.689 -5.896 0.736 -2.891 -10.724 -2.762 -9.835 ML 200 198 6 203 6 1 1 572 1256 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 570 1255 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 566 1251 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 573 1258 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 573 1258 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 121 A U - - MP 205 204 6 209 4 2 2 572 1257 -16.312 -16.519 -0.000 -14.933 -4.026 -4.589 -11.397 3.495 -6.472 -12.238 1.600 -8.657 -11.256 -1.160 -5.602 -8.668 -0.736 -11.581 -1.028 -6.579 ML 206 204 6 209 4 1 1 570 1255 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 567 1252 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 565 1250 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 572 1256 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 571 1256 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - - - ML 211 210 6 213 3 1 1 570 1255 -17.221 -0.000 -15.875 -11.299 1.863 -6.775 -1.506 D 212 210 6 213 3 0 0 563 1247 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 570 1255 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - U - - - ML 214 213 3 216 3 1 1 569 1254 -17.221 -0.000 -15.875 -6.771 -6.608 -12.204 1.993 D 215 213 3 216 3 0 0 559 1244 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 569 1253 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - u - - - ML 217 216 3 219 3 1 1 568 1253 -17.221 -0.000 -15.875 0.001 -0.001 -0.001 0.001 D 218 216 3 219 3 0 0 553 1238 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 567 1252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - u - - - ML 220 219 3 222 3 1 1 567 1252 -17.221 -0.000 -15.875 0.001 -0.001 -0.001 0.001 D 221 219 3 222 3 0 0 544 1229 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 566 1250 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - u - - - ML 223 222 3 225 3 1 1 566 1251 -17.221 -0.000 -15.875 0.001 -0.001 -0.001 0.001 D 224 222 3 225 3 0 0 526 1211 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 564 1248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - A - - - ML 226 225 3 228 3 1 1 565 1250 -1.406 -0.684 -15.875 1.111 -11.817 0.719 -2.373 D 227 225 3 228 3 0 0 441 1126 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 601 1285 -0.039 -5.235 -18.445 0.000 0.000 0.000 0.000 [ MATL 41 ] 120 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.692 -0.763 -10.599 -2.487 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Arg ACC euk-Arg-r2-031616 LENG 73 MAXL 631 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 06:17:27 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Arg-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Arg-r2-031616.sto NSEQ 2318 EFFN 18.573605 CKSUM 482676187 STATS LOCAL MSV -8.0153 0.71878 STATS LOCAL VITERBI -9.0193 0.71878 STATS LOCAL FORWARD -3.7439 0.71878 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58384 1.42123 1.17064 1.41375 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 0.00000 * 1 2.40501 2.76030 0.25475 2.64017 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 2 2.15550 0.87076 1.21739 1.77479 2 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 3 3.05461 0.45199 2.08091 1.65191 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01266 5.11571 5.02387 1.46634 0.26236 1.09861 0.40547 4 2.89184 0.65987 2.44148 1.07711 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01208 5.11513 5.11513 1.46634 0.26236 1.03833 0.43702 5 2.08774 1.00129 1.29037 1.45474 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01693 4.52948 5.11571 0.88848 0.52980 1.09861 0.40547 6 1.90382 1.19331 1.31454 1.27588 7 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 7 1.86690 2.29877 0.40927 2.51480 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 8 4.28288 4.11143 4.94617 0.03801 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 9 2.05742 4.22614 0.17658 3.93836 10 G - - , 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 10 3.87534 5.04458 0.03464 4.98232 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 11 3.96534 0.18545 3.83801 2.04974 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.01225 5.11571 5.08783 1.46634 0.26236 1.09861 0.40547 12 2.58119 1.29270 0.91373 1.39126 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11554 5.11554 1.46634 0.26236 1.08011 0.41485 13 2.04913 0.78311 2.27467 1.16687 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 14 0.01896 5.20355 4.83315 5.23534 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 15 0.32182 4.36882 1.39756 4.17941 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 16 3.15265 3.12323 4.16311 0.10793 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27298 1.45718 5.11571 0.05077 3.00578 1.09861 0.40547 17 4.62048 6.04375 0.01680 5.41798 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 18 4.43382 5.90639 0.02161 4.99341 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 19 0.85343 2.09172 3.01807 0.91211 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.44109 3.20909 1.15115 0.93829 0.49643 1.09861 0.40547 20 2.39292 2.35285 3.19691 0.25793 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01756 4.74425 4.74425 1.46634 0.26236 0.03725 3.30866 21 0.24502 3.57323 2.79781 2.05334 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 22 0.94423 2.36914 0.93249 2.08837 28 g - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 23 1.48423 0.95043 1.21875 2.39526 29 c - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 24 2.18304 3.97924 0.16848 3.74415 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 25 4.82596 0.09778 4.71167 2.57515 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01306 5.11571 4.96496 1.46634 0.26236 1.09861 0.40547 26 1.23792 3.66889 0.46615 2.86299 32 G - - , 1.38629 1.38629 1.38629 1.38629 0.01209 5.11473 5.11473 1.46634 0.26236 1.00068 0.45828 27 2.71631 1.34074 2.67404 0.50541 33 U - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 28 2.59460 0.77329 1.75109 1.23701 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.02377 4.04635 5.11571 0.58540 0.81393 1.09861 0.40547 29 1.78549 1.57293 1.37378 0.98967 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 30 2.33298 2.67884 0.25336 2.84446 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 31 0.67475 1.45270 2.30940 1.84860 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 32 4.28882 0.11541 4.60030 2.46240 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 33 4.28992 4.12498 4.95537 0.03761 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 34 1.31891 1.45973 1.46990 1.30812 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 35 1.31891 1.45973 1.46990 1.30812 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 36 1.31891 1.45973 1.46990 1.30812 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 37 0.64908 3.88072 0.93704 2.73252 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.41521 1.09722 5.11571 3.62024 0.02714 1.09861 0.40547 38 0.25001 1.98688 3.89022 2.75452 120 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 39 2.14035 2.43705 1.29466 0.65205 121 U - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 40 3.17942 0.36090 2.48039 1.72803 122 C - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 41 1.05616 1.49842 1.50514 1.57628 123 a - - > 1.38629 1.38629 1.38629 1.38629 0.02377 4.04635 5.11571 0.58540 0.81393 1.09861 0.40547 42 1.33864 1.83659 0.71830 2.39845 125 g - - > 1.38629 1.38629 1.38629 1.38629 0.01793 4.44253 5.11571 0.82491 0.57674 1.09861 0.40547 43 0.81787 2.83589 0.85991 2.56703 127 a - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 44 0.46762 3.06513 1.98510 1.66341 128 A - - , 1.38629 1.38629 1.38629 1.38629 0.10002 2.61291 3.82319 2.23849 0.11274 1.09861 0.40547 45 3.39355 3.53862 0.09124 3.70679 141 G - - , 1.38629 1.38629 1.38629 1.38629 0.13136 2.14558 5.09972 2.27612 0.10834 0.43771 1.03708 46 0.94030 3.05973 0.77021 2.30589 163 g - - , 1.38629 1.38629 1.38629 1.38629 0.10437 3.08185 2.93303 0.24382 1.53077 1.09861 0.40547 47 3.54385 2.18442 3.33539 0.19485 165 U - - , 1.38629 1.38629 1.38629 1.38629 0.01268 5.06732 5.06732 1.46634 0.26236 0.20333 1.69286 48 3.54714 1.54999 3.99365 0.30041 166 U - - , 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 49 2.25655 1.85728 0.37293 2.98622 167 G - - < 1.38629 1.38629 1.38629 1.38629 0.01215 5.11571 5.10358 1.46634 0.26236 1.09861 0.40547 50 2.40441 0.96869 2.22457 0.86278 168 u - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11563 5.11563 1.46634 0.26236 1.09055 0.40952 51 1.37608 2.94814 0.43643 3.02291 169 G - - < 1.38629 1.38629 1.38629 1.38629 0.01733 4.49384 5.11571 0.86189 0.54881 1.09861 0.40547 52 2.29659 3.51104 0.17663 3.45963 171 G - - < 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 53 3.93968 4.77072 0.04862 3.93606 172 G - - < 1.38629 1.38629 1.38629 1.38629 0.01245 5.11571 5.05576 1.46634 0.26236 1.09861 0.40547 54 3.92445 3.81697 4.37127 0.05592 173 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01769 4.46251 5.11534 0.83939 0.56558 1.05905 0.42585 55 4.09583 3.81806 4.43798 0.05175 175 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 56 4.54525 0.03939 4.65388 3.99070 176 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.45720 5.11571 0.83532 0.56869 1.09861 0.40547 57 2.76716 4.80220 0.08460 4.59805 178 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 58 0.02184 4.94162 4.77401 5.11425 179 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01768 4.46377 5.11571 0.84003 0.56510 1.09861 0.40547 59 2.01189 1.82577 0.55861 2.01616 181 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 60 3.19846 1.03723 3.97507 0.53450 182 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01245 5.11571 5.05576 1.46634 0.26236 1.09861 0.40547 61 3.99303 0.05601 4.80896 3.58013 183 C - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11534 5.11534 1.46634 0.26236 1.05905 0.42585 62 3.71851 0.17802 3.34370 2.26823 184 C - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 63 3.27560 0.47555 2.81380 1.27051 185 C - - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 64 1.08875 2.37665 0.77645 2.20306 186 g - - > 1.38629 1.38629 1.38629 1.38629 0.01900 4.35721 5.11571 0.76672 0.62462 1.09861 0.40547 65 3.25635 0.58842 1.79462 1.42678 188 C - - > 1.38629 1.38629 1.38629 1.38629 0.01218 5.11571 5.09818 1.46634 0.26236 1.09861 0.40547 66 2.62596 0.55409 1.80278 1.67030 189 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01208 5.11560 5.11560 1.46634 0.26236 1.08696 0.41134 67 1.46891 2.01161 1.11022 1.18233 190 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01848 4.45455 5.00853 0.83344 0.57014 1.09861 0.40547 68 1.77148 1.75272 0.87519 1.42781 192 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01208 5.11503 5.11503 1.46634 0.26236 1.02845 0.44248 69 1.44148 2.64854 0.48472 2.56655 193 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01240 5.11571 5.06361 1.46634 0.26236 1.09861 0.40547 70 1.77329 2.16494 0.42198 2.81798 194 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01208 5.11539 5.11539 1.46634 0.26236 1.06419 0.42313 71 1.90356 2.50853 0.82986 1.09822 195 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01208 5.11571 5.11571 1.46634 0.26236 1.09861 0.40547 72 2.82602 0.52466 2.64205 1.28092 196 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03029 3.73668 5.11571 1.17063 0.37131 1.09861 0.40547 73 1.43336 2.99206 0.89074 1.20078 200 g - - : 1.38629 1.38629 1.38629 1.38629 0.00606 5.10969 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Asn ACC euk-Asn-r2-031616 STATES 236 NODES 63 CLEN 74 W 442 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 06:53:22 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Asn-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Asn-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asn-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asn-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asn-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asn-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Asn-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 874 EFFN 874.000000 CKSUM 827166040 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8958 0.71879 ECMLC 0.64020 -7.77482 1.84561 1600000 567550 0.002114 ECMGC 0.31159 -50.38201 -36.82437 1600000 27334 0.014634 ECMLI 0.63789 -7.30587 2.22497 1600000 524256 0.002289 ECMGI 0.31363 -47.32416 -33.89905 1600000 26958 0.014838 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 442 888 -14.700 -15.946 -0.000 -12.399 IL 1 1 2 1 4 22 45 444 890 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 23 46 445 890 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 184 - G - - MR 3 2 3 5 5 30 55 443 889 -5.436 -0.034 -14.565 -14.777 -15.669 -2.128 -6.006 1.770 -1.534 D 4 2 3 5 5 19 41 441 886 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 26 51 445 891 -0.611 -1.545 -11.246 -9.414 -10.520 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 180 G C - - MP 6 5 3 10 6 30 54 442 888 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -9.661 -3.630 -9.479 -4.203 -4.932 -4.219 -3.089 -10.168 -9.917 3.425 -5.468 -0.805 2.100 -6.355 -7.681 -6.023 ML 7 5 3 10 6 21 43 440 885 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 21 43 439 885 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 18 40 434 879 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 22 44 441 887 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 22 44 441 887 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 179 u a - - MP 12 11 6 16 6 29 52 440 886 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -9.977 -9.681 -4.512 0.872 -3.683 -10.823 2.517 -9.501 -6.135 0.688 -10.351 -7.251 2.687 -5.932 -2.679 -3.734 ML 13 11 6 16 6 21 43 438 883 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 21 43 437 883 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 18 39 432 878 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 21 44 439 885 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 22 44 439 885 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 178 C G - - MP 18 17 6 22 6 28 50 438 884 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -3.027 -13.017 -12.053 -9.254 -2.774 -12.197 3.834 -11.318 -12.156 -9.226 -3.031 -11.421 0.269 -12.569 -2.855 -10.958 ML 19 17 6 22 6 20 43 436 882 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 20 43 435 881 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 39 431 877 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 21 44 437 883 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 44 437 883 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 177 U G - - MP 24 23 6 28 6 26 48 436 882 -15.685 -15.624 -0.001 -11.781 -14.681 -15.076 -12.649 -12.877 -4.512 -9.069 -10.376 -12.175 1.493 -11.282 -12.096 -5.362 -3.282 -0.512 0.439 -5.433 3.445 -4.650 ML 25 23 6 28 6 20 42 434 880 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 20 42 434 879 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 17 39 430 875 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 21 43 435 881 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 21 43 435 881 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 176 C G - - MP 30 29 6 34 6 24 46 434 880 -15.685 -5.995 -0.023 -14.400 -14.680 -15.075 -9.997 -9.698 -4.892 -5.525 -4.207 -5.297 3.452 -5.364 -9.854 1.095 -4.471 -0.236 0.624 -6.769 -1.697 -8.573 ML 31 29 6 34 6 20 42 433 878 -6.631 -6.977 -0.885 -1.386 -6.827 -4.356 -0.010 0.390 -0.707 0.117 MR 32 29 6 34 6 20 42 432 878 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 17 39 429 874 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 21 43 433 879 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 22 45 433 879 -5.717 -0.043 -9.228 -7.396 -8.502 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 174 u a - - MP 36 35 6 40 6 22 44 432 878 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -4.151 -9.531 -9.789 0.610 -3.350 -7.368 2.137 -9.403 -9.675 0.323 -10.197 0.723 2.704 -5.475 -1.151 -5.692 ML 37 35 6 40 6 19 41 431 876 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 19 41 430 876 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 17 39 428 874 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 20 42 432 877 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 20 42 431 877 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 173 G C - - MP 42 41 6 46 4 20 42 430 876 -14.906 -6.110 -0.021 -13.527 -9.660 -5.340 -9.479 0.810 -10.609 -7.117 -1.592 -10.169 -4.081 3.638 -5.667 -0.001 -3.041 -2.151 -7.683 -8.444 ML 43 41 6 46 4 18 41 429 875 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 18 40 429 874 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 17 39 427 873 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 19 41 430 876 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 42 430 876 -1.023 -0.987 -8.186 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 18 40 428 874 -15.816 -0.000 -11.821 -6.350 -5.549 -6.681 1.984 D 49 47 6 50 3 16 38 427 872 -6.174 -1.687 -0.566 IL 50 50 3 50 3 18 40 429 875 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 17 39 427 873 -16.471 -0.000 -0.730 -6.703 1.756 -6.633 D 52 50 3 53 2 16 38 426 872 -8.488 -0.004 IL 53 53 3 53 2 17 39 428 874 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 16 38 426 872 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 4 254 596 -15.816 -0.000 -14.470 IL 56 56 2 56 3 1 1 254 597 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 98 - A - - - ML 57 56 2 59 3 1 4 254 596 -5.470 -0.041 -7.490 1.610 -1.517 -3.305 -1.007 D 58 56 2 59 3 0 0 243 586 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 7 323 665 -0.078 -4.261 -12.066 0.000 0.000 0.000 0.000 [ MATL 46 ] 119 - G - - - ML 60 59 3 62 3 1 4 161 351 -3.862 -0.103 -14.462 -2.715 -4.272 1.796 -1.633 D 61 59 3 62 3 0 0 117 307 -9.851 -0.080 -4.242 IL 62 62 3 62 3 1 5 188 378 -0.140 -3.441 -12.802 0.000 0.000 0.000 0.000 [ MATL 47 ] 139 - G - - - ML 63 62 3 65 3 1 3 90 189 -5.436 -0.035 -10.734 -0.661 -4.172 1.707 -4.435 D 64 62 3 65 3 0 0 88 187 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 91 190 -1.631 -0.569 -8.406 0.000 0.000 0.000 0.000 [ MATL 48 ] 142 - U - - - ML 66 65 3 68 3 1 4 89 188 -15.815 -0.000 -14.469 -3.593 -2.993 -4.683 1.908 D 67 65 3 68 3 0 0 88 187 -7.285 -0.555 -1.676 IL 68 68 3 68 3 1 1 90 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 143 - U - - - ML 69 68 3 71 5 1 3 88 187 -14.749 -0.000 -14.565 -14.777 -15.669 -6.128 0.776 -5.311 1.169 D 70 68 3 71 5 0 0 86 185 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 88 187 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 144 170 G C - - MP 72 71 3 76 6 2 3 87 186 -15.685 -5.988 -0.023 -14.401 -14.681 -15.076 -12.470 -3.266 -12.893 -1.097 -13.692 -11.262 -0.281 -13.359 -4.783 3.841 -7.472 -2.357 -8.784 -4.945 -10.660 -11.856 ML 73 71 3 76 6 1 1 85 184 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 85 184 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 81 179 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 86 185 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 86 185 -5.723 -0.043 -9.234 -7.402 -8.508 0.000 0.000 0.000 0.000 [ MATP 51 ] 145 168 G C - - MP 78 77 6 82 6 2 3 85 184 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -9.655 -5.489 -9.474 1.711 -10.600 -4.460 -0.222 -10.163 -5.863 3.098 -10.158 -2.047 1.534 -4.312 -5.279 -8.439 ML 79 77 6 82 6 1 1 83 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 83 182 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 79 178 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 84 183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 84 183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 146 167 U A - - MP 84 83 6 88 6 2 3 83 182 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -4.612 -9.527 -9.962 0.837 -6.978 -10.768 -0.250 -9.580 -6.169 2.308 -10.367 -7.110 3.040 -4.347 -3.887 -8.583 ML 85 83 6 88 6 1 1 81 180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 81 180 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 78 177 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 82 181 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 82 181 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 147 166 G C - - MP 90 89 6 94 6 2 2 81 180 -6.973 -15.624 -0.024 -6.895 -14.681 -15.076 -13.500 -4.328 -15.362 2.161 -15.103 -3.222 -9.469 -15.086 -4.565 3.489 -11.794 -4.575 -9.823 -4.186 -11.884 -14.361 ML 91 89 6 94 6 1 1 80 179 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 79 178 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 77 176 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 80 179 -5.657 -5.920 -0.072 -7.575 -8.352 -8.012 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 80 179 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 149 165 G C - - MP 96 95 6 100 4 2 2 79 178 -14.894 -15.101 -0.000 -13.515 -13.656 -4.500 -16.248 -7.725 -15.261 -4.737 -9.532 -15.582 -4.348 3.966 -4.702 -3.491 -9.904 -3.216 -11.994 -15.502 ML 97 95 6 100 4 1 1 78 177 -6.913 -0.160 -3.662 -5.825 -3.779 -3.442 -4.572 1.923 MR 98 95 6 100 4 1 1 78 177 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 77 175 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 79 178 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 77 176 -3.904 -3.260 -0.271 0.000 0.000 0.000 0.000 [ MATL 55 ] 150 - U - - - ML 102 101 6 104 3 1 1 77 176 -15.804 -0.000 -14.458 -1.811 -5.721 -9.531 1.885 D 103 101 6 104 3 0 0 76 175 -10.419 -0.053 -4.811 IL 104 104 3 104 3 1 1 78 177 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 151 - U - - - ML 105 104 3 107 3 1 1 76 175 -15.816 -0.000 -14.470 -6.327 -6.488 -6.516 1.987 D 106 104 3 107 3 0 0 73 172 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 77 176 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 152 - C - - - ML 108 107 3 110 3 1 1 75 174 -7.076 -0.011 -14.470 -6.058 1.963 -5.055 -4.147 D 109 107 3 110 3 0 0 72 170 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 75 174 -3.754 -0.129 -6.454 0.000 0.000 0.000 0.000 [ MATL 58 ] 154 - G - - - ML 111 110 3 113 3 1 1 74 173 -15.816 -0.000 -14.470 0.317 -5.736 1.446 -6.483 D 112 110 3 113 3 0 0 70 168 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 74 173 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 155 - A - - - ML 114 113 3 116 3 1 1 73 172 -4.525 -0.064 -14.470 1.987 -6.527 -6.453 -6.154 D 115 113 3 116 3 0 0 66 165 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 89 188 -0.269 -2.560 -11.279 0.000 0.000 0.000 0.000 [ MATL 60 ] 162 - G - - - ML 117 116 3 119 3 1 1 8 26 -15.816 -0.001 -10.719 -1.516 -1.472 1.632 -2.399 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 163 - C - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -5.223 1.680 -6.069 -0.408 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 17 401 847 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 1 17 401 847 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 25 44 -0.000 -13.812 -13.219 -13.859 [ MATP 15 ] 10 28 G C - - MP 127 126 1 131 6 2 6 25 44 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -13.583 -5.016 -15.759 -1.919 -15.231 -11.416 -9.542 -15.280 -4.614 3.914 -4.336 -1.199 -9.902 -3.324 -11.986 -14.781 ML 128 126 1 131 6 1 2 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 2 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 2 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G - - MP 133 132 6 137 6 2 6 23 42 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -12.735 -13.017 -3.831 -9.254 -3.860 -3.171 3.880 -3.860 -12.156 -9.226 -12.276 -11.422 -2.115 -12.569 -0.462 -10.958 ML 134 132 6 137 6 1 2 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 2 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 G C - - MP 139 138 6 143 6 2 6 21 40 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -9.752 -1.054 -9.604 -3.387 -10.005 -5.599 0.928 -7.545 -5.148 3.056 -10.226 -1.927 2.284 -9.511 -7.261 -8.494 ML 140 138 6 143 6 1 2 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 2 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 2 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 C G - - MP 145 144 6 149 4 2 5 19 38 -14.906 -15.113 -0.000 -13.527 0.731 -12.137 -6.000 -8.151 -1.675 -4.115 3.575 -5.917 -11.704 0.684 -3.975 -10.056 -2.730 -12.087 -3.192 -3.646 ML 146 144 6 149 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 2 27 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 2 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 3 16 35 -15.816 -0.000 -14.470 1.887 -11.067 -1.731 -10.800 D 152 150 6 153 3 0 0 21 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 2 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - - - ML 154 153 3 156 3 1 2 15 34 -15.816 -0.000 -14.470 1.126 -5.905 0.839 -6.370 D 155 153 3 156 3 0 0 19 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 2 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - - - ML 157 156 3 159 3 1 1 14 32 -15.816 -0.104 -3.842 -4.444 -1.593 -9.421 1.856 D 158 156 3 159 3 0 0 18 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - - - ML 160 159 3 162 3 1 2 13 31 -4.299 -0.075 -14.366 -4.564 -0.040 -2.487 1.489 D 161 159 3 162 3 0 0 12 31 -13.401 -0.007 -7.793 IL 162 162 3 162 3 1 1 13 31 -6.160 -0.023 -8.861 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - - - ML 163 162 3 165 3 1 2 12 30 -15.816 -0.000 -14.470 -5.036 -12.090 1.985 -6.489 D 164 162 3 165 3 0 0 16 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 166 165 3 168 3 1 2 10 29 -15.816 -0.000 -14.470 -4.933 -6.252 1.977 -5.753 D 167 165 3 168 3 0 0 15 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - - - ML 169 168 3 171 3 1 1 9 27 -6.678 -0.297 -2.503 -4.681 -1.033 -9.436 1.795 D 170 168 3 171 3 0 0 8 26 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 9 27 -4.081 -0.102 -6.781 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - U - - - ML 172 171 3 174 3 1 1 8 26 -15.536 -0.000 -14.190 -5.575 -0.700 -5.133 1.738 D 173 171 3 174 3 0 0 7 26 -14.735 -0.003 -9.126 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.863 -5.569 -6.092 -1.617 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 384 830 -6.108 -0.021 -14.470 IL 180 180 2 180 3 1 1 386 832 -1.023 -0.987 -8.189 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - G - - - ML 181 180 2 183 5 1 1 384 830 -14.749 -0.000 -14.565 -14.777 -15.669 -1.250 -5.697 1.821 -5.160 D 182 180 2 183 5 0 0 381 827 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 384 830 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 97 U A - - MP 184 183 3 188 6 2 2 383 829 -15.685 -15.624 -0.001 -14.401 -11.332 -15.076 -4.947 -11.881 -11.549 -7.858 -4.434 -11.928 -3.189 -1.437 0.251 -0.253 -11.828 -4.092 3.409 -6.020 1.430 -5.998 ML 185 183 3 188 6 1 1 380 826 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 380 826 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 374 820 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 382 828 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 382 828 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 96 u a - - MP 190 189 6 194 6 2 2 381 827 -7.063 -7.045 -0.022 -14.400 -14.680 -15.075 -9.953 -5.195 -9.957 -0.208 -3.931 -10.802 1.677 -9.490 -5.224 0.824 -10.334 -5.550 2.934 -6.716 1.153 -2.766 ML 191 189 6 194 6 1 1 378 824 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 378 824 -7.459 -6.188 -0.965 -6.166 -1.300 -4.379 1.017 -0.883 -0.628 -0.345 D 193 189 6 194 6 0 0 373 819 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 380 826 -5.578 -5.840 -0.076 -7.496 -8.272 -7.932 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 380 826 -4.813 -0.082 -8.324 -6.492 -7.598 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 94 C G - - MP 196 195 6 200 6 2 2 379 825 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -5.385 -9.684 -9.982 0.204 -2.636 -5.688 3.271 -5.299 -9.841 -0.556 -6.389 -7.252 1.948 -10.165 -1.373 -5.845 ML 197 195 6 200 6 1 1 377 822 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 376 821 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 371 817 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 378 824 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 378 824 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 93 G C - - MP 202 201 6 206 6 2 2 377 823 -15.685 -15.624 -0.000 -14.401 -14.681 -15.076 -9.681 -2.927 -9.501 -2.093 -5.730 -4.738 -2.804 -10.190 -3.760 3.753 -10.178 0.789 -5.963 -3.757 -7.705 -4.337 ML 203 201 6 206 6 1 1 375 821 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 373 819 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 370 816 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 376 822 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 376 822 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 37 92 G C - - MP 208 207 6 212 4 2 2 375 821 -14.906 -15.113 -0.000 -13.527 -5.671 -3.812 -5.888 2.787 -10.606 -6.144 -2.991 -10.165 -4.750 3.115 -6.503 -3.720 -5.938 -4.701 -7.680 -8.441 ML 209 207 6 212 4 1 1 373 819 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 371 817 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 369 815 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 375 820 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 374 820 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - C - - - ML 214 213 6 216 3 1 1 373 819 -15.816 -0.000 -14.470 -6.399 1.969 -6.541 -3.998 D 215 213 6 216 3 0 0 367 813 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 373 819 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 217 216 3 219 3 1 1 372 818 -15.816 -0.000 -14.470 -6.413 -6.389 -10.437 1.991 D 218 216 3 219 3 0 0 365 810 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 372 818 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - u - - - ML 220 219 3 222 3 1 1 371 817 -15.816 -0.000 -14.470 0.003 -0.003 -0.004 0.004 D 221 219 3 222 3 0 0 361 807 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 371 816 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - u - - - ML 223 222 3 225 3 1 1 370 816 -15.816 -0.000 -14.470 0.003 -0.003 -0.004 0.004 D 224 222 3 225 3 0 0 355 800 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 369 815 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - u - - - ML 226 225 3 228 3 1 1 369 815 -15.816 -0.000 -14.470 0.003 -0.003 -0.004 0.004 D 227 225 3 228 3 0 0 343 788 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 367 813 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - - - ML 229 228 3 231 3 1 1 368 814 -1.457 -0.653 -14.470 1.949 -6.172 -3.170 -6.302 D 230 228 3 231 3 0 0 288 734 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 392 837 -0.060 -4.627 -16.382 0.000 0.000 0.000 0.000 [ MATL 42 ] 91 - A - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 1.885 -1.838 -6.327 -6.193 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Asn ACC euk-Asn-r2-031616 LENG 74 MAXL 435 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 06:53:22 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Asn-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Asn-r2-031616.sto NSEQ 874 EFFN 10.838982 CKSUM 827166040 STATS LOCAL MSV -8.2803 0.71879 STATS LOCAL VITERBI -9.0499 0.71879 STATS LOCAL FORWARD -3.6380 0.71879 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59658 1.40108 1.17123 1.42255 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 0.00000 * 1 2.18835 2.68115 0.48129 1.60232 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 2 1.97845 1.07169 1.88954 0.99928 2 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 3 3.23943 0.25378 3.01933 1.99422 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 4 2.61959 1.40821 2.14470 0.57007 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 5 2.53327 0.67435 1.63257 1.53393 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 6 1.96719 1.23177 1.63111 0.98708 6 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 7 1.81764 2.74379 0.35726 2.60809 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 8 3.51036 3.35805 3.98940 0.08687 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.01886 4.68323 4.66337 1.46634 0.26236 1.09861 0.40547 9 1.91718 3.86447 0.21872 3.55924 9 G - - , 1.38629 1.38629 1.38629 1.38629 0.01867 4.68304 4.68304 1.46634 0.26236 1.08542 0.41213 10 2.74343 3.69691 0.12874 3.45306 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 11 4.10353 0.10289 4.00629 2.76365 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 12 2.12031 1.91362 0.71671 1.41017 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 13 1.89579 0.68073 1.81373 1.71197 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 14 0.11801 4.17416 2.54378 4.05405 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 15 0.63015 3.66430 0.89238 3.43616 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 16 3.19014 2.39458 3.87739 0.16615 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07702 4.68323 2.73526 1.46634 0.26236 1.09861 0.40547 17 2.66530 1.50031 2.76873 0.43909 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06136 3.00136 4.62599 0.35604 1.20545 0.25086 1.50568 18 3.97404 5.26513 0.03470 4.59118 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 19 3.77174 4.70064 0.04704 4.27920 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 20 3.17997 2.12283 3.84283 0.20176 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18277 4.07266 1.89705 0.87023 0.54275 1.09861 0.40547 21 2.98516 1.93092 3.43552 0.25845 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02176 4.53152 4.53152 1.46634 0.26236 0.11628 2.20931 22 0.15392 3.42201 3.53818 2.51395 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 23 1.62438 1.93442 0.63159 2.06584 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 24 1.49715 0.75790 1.80488 1.94428 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 25 3.24127 4.00693 0.08081 3.89577 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 26 3.72344 0.16557 3.45187 2.33557 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03051 3.87259 4.68323 1.01415 0.45053 1.09861 0.40547 27 2.17357 3.73149 0.18751 3.40369 31 G - - , 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 28 2.19888 1.76140 1.72877 0.61662 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.01896 4.68323 4.65330 1.46634 0.26236 1.09861 0.40547 29 2.19792 1.34402 1.84204 0.75571 33 u - - < 1.38629 1.38629 1.38629 1.38629 0.02480 4.18365 4.68295 0.95672 0.48475 1.07876 0.41554 30 2.18812 0.73973 2.13805 1.22844 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 31 2.11418 2.80550 0.28632 2.69163 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 32 1.13392 2.82743 0.59194 2.72093 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 33 4.10619 0.06255 4.43731 3.43171 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 34 3.85345 3.70067 4.47292 0.05904 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 35 1.29764 1.48520 1.49989 1.28297 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 36 1.29764 1.48520 1.49989 1.28297 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 37 1.29764 1.48520 1.49989 1.28297 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 38 0.07634 4.07527 3.27361 3.98256 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.36986 1.20424 4.68323 3.19429 0.04186 1.09861 0.40547 39 0.13577 2.69802 3.60331 3.43018 91 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 40 2.97748 0.64824 2.64065 1.03621 92 C - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 41 2.96496 0.39525 2.65204 1.58758 93 C - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 42 1.36892 2.28160 0.67103 2.02257 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.02487 4.17897 4.68323 0.95269 0.48728 1.09861 0.40547 43 1.00257 1.95609 1.03245 1.99861 96 a - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 44 0.76591 2.08090 1.32323 1.93794 97 a - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 45 0.39063 2.22263 2.75357 1.88820 98 A - - , 1.38629 1.38629 1.38629 1.38629 0.04176 3.60285 4.29369 2.79163 0.06328 1.09861 0.40547 46 2.47770 3.24160 0.24051 2.39977 119 G - - , 1.38629 1.38629 1.38629 1.38629 0.07625 2.74687 4.67881 2.34035 0.10125 0.85643 0.55282 47 1.79751 3.25649 0.29102 3.03110 139 G - - , 1.38629 1.38629 1.38629 1.38629 0.03808 3.58704 4.63744 0.75783 0.63240 1.09861 0.40547 48 3.03638 2.85224 3.59492 0.14293 142 U - - , 1.38629 1.38629 1.38629 1.38629 0.01868 4.68279 4.68279 1.46634 0.26236 1.06832 0.42096 49 2.85913 0.94894 3.40674 0.64935 143 U - - , 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 50 2.25089 2.67339 0.25436 2.99043 144 G - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 51 1.57074 2.39406 0.61968 1.81564 145 G - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 52 1.91764 1.86429 1.17304 0.94517 146 u - - < 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 53 1.42817 2.94158 0.43347 2.82659 147 G - - < 1.38629 1.38629 1.38629 1.38629 0.02519 4.15869 4.68323 0.93640 0.49764 1.09861 0.40547 54 3.15137 3.91092 0.09266 3.66202 149 G - - < 1.38629 1.38629 1.38629 1.38629 0.02553 4.68323 4.13755 1.46634 0.26236 1.09861 0.40547 55 2.54013 3.24583 3.88184 0.14897 150 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01880 4.67649 4.67649 1.46634 0.26236 0.76960 0.62213 56 3.53177 3.42941 4.00097 0.08333 151 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 57 4.02316 0.06801 4.19804 3.41661 152 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02470 4.18964 4.68323 0.96137 0.48187 1.09861 0.40547 58 1.19451 3.56607 0.45767 3.32076 154 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 59 0.03741 4.55781 4.26964 4.40268 155 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05463 3.12545 4.68323 1.75268 0.19032 1.09861 0.40547 60 2.06965 2.37699 0.36037 2.48268 162 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01912 4.68323 4.63693 1.46634 0.26236 1.09861 0.40547 61 3.06752 0.30848 3.73962 1.63406 163 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01868 4.68279 4.68279 1.46634 0.26236 1.06798 0.42114 62 4.02033 0.10237 3.80281 2.86388 165 C - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 63 3.09501 0.47142 2.81492 1.30675 166 C - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 64 1.02245 1.23907 1.71174 1.77147 167 a - - > 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 65 1.93716 0.68453 2.26211 1.39663 168 C - - > 1.38629 1.38629 1.38629 1.38629 0.03163 3.82192 4.68323 0.70169 0.68467 1.09861 0.40547 66 3.24316 0.29201 2.54888 1.99487 170 C - - > 1.38629 1.38629 1.38629 1.38629 0.03049 3.87372 4.68323 1.01453 0.45031 1.09861 0.40547 67 2.92680 0.43915 2.57296 1.48927 173 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 68 1.10945 2.03909 1.10294 1.56917 174 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03177 3.82461 4.66277 0.70332 0.68307 1.09861 0.40547 69 1.73810 1.88390 0.60428 2.07402 176 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01868 4.68304 4.68304 1.46634 0.26236 1.08502 0.41233 70 1.82248 2.57794 0.43362 2.16902 177 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 71 2.10214 3.29250 0.22725 3.12538 178 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 72 1.10414 2.00512 0.98191 1.83718 179 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01867 4.68323 4.68323 1.46634 0.26236 1.09861 0.40547 73 1.68778 0.55307 2.53144 1.83043 180 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03761 3.58763 4.68323 1.19657 0.35986 1.09861 0.40547 74 2.36908 3.43469 0.24600 2.38297 184 G - - : 1.38629 1.38629 1.38629 1.38629 0.00938 4.67394 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Asp ACC euk-Asp-r2-031616 STATES 230 NODES 61 CLEN 72 W 420 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 07:17:25 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Asp-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Asp-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asp-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asp-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asp-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Asp-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Asp-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 782 EFFN 782.000000 CKSUM 744627801 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.8516 0.71883 ECMLC 0.82646 -5.24364 2.24350 1600000 584158 0.002054 ECMGC 0.33756 -42.84434 -30.01570 1600000 30391 0.013162 ECMLI 0.66953 -6.69499 2.42494 1600000 538265 0.002229 ECMGI 0.33373 -40.41747 -27.45823 1600000 30221 0.013236 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 420 854 -14.540 -15.786 -0.000 -12.239 IL 1 1 2 1 4 20 42 422 856 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 44 422 856 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 162 - G - - MR 3 2 3 5 5 26 52 421 855 -5.131 -0.042 -14.405 -14.617 -15.509 0.631 -6.395 1.277 -5.874 D 4 2 3 5 5 16 39 418 852 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 23 49 423 857 -0.609 -1.549 -11.389 -9.556 -10.662 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 158 U A - - MP 6 5 3 10 6 26 52 420 854 -15.526 -15.465 -0.018 -6.338 -14.521 -14.916 -4.850 -6.472 -2.560 -8.568 -3.541 -12.120 -6.030 -11.176 -6.255 0.263 -6.465 -10.236 3.821 -5.915 -1.987 -4.219 ML 7 5 3 10 6 18 41 418 852 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 41 417 851 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 37 411 845 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 42 419 853 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 42 419 853 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 157 C G - - MP 12 11 6 16 6 25 50 418 852 -15.508 -15.447 -0.000 -14.224 -14.504 -14.899 -11.464 -11.357 -11.168 -7.289 -2.042 -9.608 3.728 -4.585 -6.002 -0.405 -5.933 -9.118 -0.581 -11.506 -0.037 -5.306 ML 13 11 6 16 6 21 44 418 852 -10.156 -0.099 -5.217 -4.911 -10.352 -7.882 1.964 -5.245 -4.685 -4.944 MR 14 11 6 16 6 17 40 415 849 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 37 410 844 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 42 417 851 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 21 45 417 851 -5.270 -0.059 -8.781 -6.949 -8.055 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 155 C G - - MP 18 17 6 22 6 23 48 416 850 -15.526 -15.465 -0.000 -14.242 -14.521 -14.916 -9.980 -9.690 -3.944 -2.514 -3.850 -4.735 3.644 -3.431 -9.828 -2.071 -5.534 -7.264 1.235 -10.155 -1.225 -8.549 ML 19 17 6 22 6 17 40 413 847 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 40 413 847 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 37 408 842 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 41 415 849 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 42 415 849 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 154 u g - - MP 24 23 6 28 6 21 46 414 848 -15.526 -15.465 -0.000 -14.242 -14.521 -14.916 -9.826 -9.527 -4.583 -3.033 -5.247 -10.670 2.514 -9.345 -6.713 1.229 -6.981 -2.553 -0.744 -7.376 2.793 -5.109 ML 25 23 6 28 6 17 40 411 846 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 40 411 845 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 37 407 841 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 41 413 847 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 41 413 847 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 153 c g - - MP 30 29 6 34 6 19 44 412 846 -15.526 -15.465 -0.000 -14.242 -14.521 -14.916 -9.793 -9.506 -5.936 0.077 -3.304 -10.642 2.897 -4.312 -9.661 -1.600 -6.381 -7.087 1.398 -3.495 1.986 -1.791 ML 31 29 6 34 6 16 40 410 844 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 40 409 844 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 37 406 840 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 41 411 845 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 41 411 845 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 152 G C - - MP 36 35 6 40 6 17 42 410 844 -15.526 -15.465 -0.003 -14.242 -14.521 -9.180 -6.818 -4.064 -5.853 0.980 -10.126 -6.861 0.721 -9.827 -6.022 3.078 -3.335 0.841 0.716 -4.939 -2.281 -4.371 ML 37 35 6 40 6 15 39 408 842 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 39 408 842 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 37 405 840 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 40 409 843 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 40 409 843 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 151 u a - - MP 42 41 6 46 4 15 40 408 842 -14.743 -6.031 -0.022 -13.365 -4.808 -1.218 -9.312 1.713 -4.739 -5.864 -5.509 -10.003 -9.751 2.078 -5.321 1.651 2.221 -4.957 -4.618 -4.291 ML 43 41 6 46 4 14 38 407 841 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 38 406 841 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 37 405 839 -6.286 -5.967 -3.983 -0.139 IL 46 46 5 46 4 14 39 408 842 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 39 407 841 -4.496 -0.076 -7.196 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 13 38 406 840 -5.310 -0.037 -14.307 -5.536 -3.708 -4.581 1.949 D 49 47 6 50 3 12 37 405 839 -8.263 -0.255 -2.655 IL 50 50 3 50 3 13 38 406 841 -1.182 -2.916 -1.228 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 51 50 3 53 2 12 37 405 839 -16.281 -0.000 1.404 -10.402 0.417 -5.870 D 52 50 3 53 2 11 36 404 839 -0.517 -1.732 IL 53 53 3 53 2 12 37 405 839 -5.977 -0.023 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 11 36 404 838 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 2 69 129 -15.656 -0.000 -14.310 IL 56 56 2 56 3 1 1 70 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 99 - A - - - ML 57 56 2 59 3 1 2 69 129 -2.645 -0.251 -14.310 1.332 -3.344 -0.599 -0.466 D 58 56 2 59 3 0 0 60 120 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 2 74 134 -0.438 -1.936 -12.350 0.000 0.000 0.000 0.000 [ MATL 45 ] 127 - G - - - ML 60 59 3 62 3 1 1 29 48 -15.656 -0.008 -7.456 -5.213 -6.315 1.976 -5.218 D 61 59 3 62 3 0 0 31 50 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 128 - A - - - ML 63 62 3 65 3 1 1 28 47 -15.647 -0.000 -14.301 1.522 -4.367 -0.401 -1.632 D 64 62 3 65 3 0 0 28 47 -9.734 -0.087 -4.126 IL 65 65 3 65 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 129 - C - - - ML 66 65 3 68 5 1 1 27 46 -14.589 -0.000 -14.405 -14.617 -15.509 -5.586 1.852 -1.997 -3.067 D 67 65 3 68 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 130 149 C G - - MP 69 68 3 73 6 2 2 26 45 -15.526 -5.611 -0.033 -9.825 -9.893 -14.916 -3.687 -12.824 -5.531 -4.979 -2.216 -12.033 3.885 -11.151 -3.330 -9.017 -4.441 -1.978 -3.724 -12.396 -1.316 -10.784 ML 70 68 3 73 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 25 44 -5.921 -0.037 -9.432 -7.600 -8.706 0.000 0.000 0.000 0.000 [ MATP 49 ] 131 147 C G - - MP 75 74 6 79 6 2 2 24 43 -15.523 -15.462 -0.000 -14.239 -14.518 -14.913 -5.171 -3.147 -8.952 0.390 -8.644 -5.326 3.192 -9.051 -4.684 2.035 -5.225 -2.304 -0.645 -5.236 -1.593 -6.345 ML 76 74 6 79 6 1 1 24 42 -7.384 -7.730 -0.458 -2.139 -7.580 -5.110 -0.562 -1.586 1.311 -0.977 MR 77 74 6 79 6 1 1 24 42 -7.986 -6.715 -0.596 -6.693 -1.827 -4.906 -0.624 1.099 -1.379 -0.278 D 78 74 6 79 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 132 146 G C - - MP 81 80 6 85 6 2 2 22 41 -6.954 -15.465 -0.012 -14.242 -14.521 -14.916 -11.126 -6.548 -11.140 1.866 -12.303 -5.419 -7.318 -3.802 -10.823 3.436 -11.112 0.443 -7.574 -4.327 -9.364 -10.045 ML 82 80 6 85 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 22 40 -5.534 -5.797 -0.078 -7.452 -8.229 -7.889 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 134 145 G C - - MP 87 86 6 91 6 2 2 20 39 -15.526 -15.465 -0.000 -14.242 -14.521 -14.916 -12.278 -4.160 -12.762 -2.439 -14.389 -12.036 -9.340 -12.766 -4.450 3.917 -11.786 -0.928 -9.487 -5.346 -11.468 -4.118 ML 88 86 6 91 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 135 144 G C - - MP 93 92 6 97 4 2 2 18 37 -6.698 -14.953 -0.014 -11.543 -13.509 -4.481 -16.100 -7.578 -15.114 -4.588 -9.386 -15.435 -4.850 3.962 -3.001 -3.010 -9.757 -4.827 -11.847 -15.354 ML 94 92 6 97 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 21 39 -5.057 -5.740 -0.077 -8.226 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 137 - U - - - ML 99 98 6 101 3 1 1 15 33 -15.655 -0.000 -14.309 -6.084 -8.540 -5.741 1.987 D 100 98 6 101 3 0 0 18 37 -6.719 -0.923 -1.111 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 138 - U - - - ML 102 101 3 104 3 1 1 13 32 -15.656 -0.000 -11.585 -12.162 -5.315 -13.295 1.991 D 103 101 3 104 3 0 0 17 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 139 - C - - - ML 105 104 3 107 3 1 1 12 31 -15.655 -0.000 -14.309 -6.071 1.906 -5.924 -2.185 D 106 104 3 107 3 0 0 16 35 -6.786 -0.866 -1.178 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 140 - A - - - ML 108 107 3 110 3 1 1 11 29 -15.656 -0.000 -14.310 1.249 -5.471 0.678 -10.353 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 141 - A - - - ML 111 110 3 113 3 1 1 9 28 -15.656 -0.000 -14.310 1.989 -11.310 -6.101 -6.038 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 142 - U - - - ML 114 113 3 116 3 1 1 8 26 -15.656 -0.000 -14.310 -3.495 -2.697 -3.760 1.881 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 143 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -4.954 0.457 -5.898 1.366 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 0 16 382 816 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 173 0 16 382 816 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 1 24 43 -0.000 -13.652 -13.060 -13.700 [ MATP 15 ] 13 31 G U - - MP 124 123 1 128 6 2 3 24 43 -15.526 -6.889 -0.012 -14.242 -14.521 -14.916 -4.695 -10.224 -11.759 -2.735 -3.182 -15.040 -9.353 -11.802 -2.977 2.500 -3.925 3.294 -9.279 -13.060 -11.185 -4.713 ML 125 123 1 128 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 24 42 -4.811 -0.082 -8.322 -6.490 -7.596 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 29 U A - - MP 130 129 6 134 6 2 3 22 41 -15.526 -15.465 -0.000 -14.242 -14.521 -14.916 -3.996 -12.857 -11.892 -9.093 -3.846 -12.037 0.415 -11.158 -11.996 -9.065 -12.116 -11.261 3.829 -4.468 -2.184 -4.152 ML 131 129 6 134 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 28 a u - - MP 136 135 6 140 6 2 3 20 39 -15.526 -15.465 -0.000 -14.242 -14.521 -14.916 -9.795 -5.417 -3.195 2.801 -5.592 -10.644 2.114 -3.376 -9.662 -2.208 -10.177 -2.506 0.974 -9.982 1.057 -7.116 ML 137 135 6 140 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 27 U G - - MP 142 141 6 146 4 2 2 18 37 -14.746 -14.953 -0.000 -13.367 -12.575 -12.857 -3.735 -9.094 -0.054 -4.985 2.184 -11.158 -11.996 -9.065 -12.116 -11.261 -2.389 -5.692 3.047 0.932 ML 143 141 6 146 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 148 147 6 150 3 1 1 15 34 -15.656 -0.000 -14.310 1.991 -11.552 -5.316 -10.920 D 149 147 6 150 3 0 0 20 38 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - G - - - ML 151 150 3 153 3 1 1 14 33 -15.656 -0.000 -14.310 -1.951 -11.217 1.890 -4.865 D 152 150 3 153 3 0 0 18 37 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - U - - - ML 154 153 3 156 3 1 1 13 31 -5.099 -0.043 -14.310 -2.703 -2.642 -3.053 1.834 D 155 153 3 156 3 0 0 16 35 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 13 32 -5.348 -0.041 -8.049 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - G - - - ML 157 156 3 159 3 1 1 12 30 -15.656 -0.000 -14.310 -6.119 -5.945 1.989 -10.918 D 158 156 3 159 3 0 0 17 35 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - - - ML 160 159 3 162 3 1 1 10 29 -15.656 -0.000 -14.310 -5.913 -5.574 1.981 -6.040 D 161 159 3 162 3 0 0 15 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - U - - - ML 163 162 3 165 3 1 1 9 27 -6.127 -0.044 -6.014 -1.692 -1.198 -4.366 1.681 D 164 162 3 165 3 0 0 10 28 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 9 27 -4.416 -0.080 -7.116 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 166 165 3 168 3 1 1 8 26 -15.633 -0.000 -14.287 -2.245 -0.340 -0.905 1.302 D 167 165 3 168 3 0 0 10 28 -11.104 -0.033 -5.496 IL 168 168 3 168 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.979 -5.451 -5.719 -5.880 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 173 122 1 174 3 0 0 366 800 -15.656 -0.000 -14.310 IL 174 174 2 174 3 1 1 367 802 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - u - - - ML 175 174 2 177 5 1 1 366 800 -6.965 -0.012 -14.405 -14.617 -15.509 -0.767 0.247 -0.541 0.622 D 176 174 2 177 5 0 0 363 797 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 366 800 -4.739 -0.086 -6.418 -8.251 -7.524 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 98 c g - - MP 178 177 3 182 6 2 2 365 799 -5.747 -15.465 -0.027 -14.242 -14.521 -14.916 -9.885 -9.590 -7.049 -1.310 -4.971 -5.898 2.949 -9.394 -9.739 0.320 -10.249 -7.159 1.881 -10.065 1.520 -8.459 ML 179 177 3 182 6 1 1 362 796 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 361 796 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 356 790 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 364 798 -6.634 -6.897 -0.036 -8.552 -9.328 -8.989 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 364 798 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 97 C G - - MP 184 183 6 188 6 2 2 363 797 -15.526 -6.652 -0.015 -11.302 -14.521 -14.916 -6.877 -5.873 -6.254 0.036 -3.549 -6.066 3.118 -3.403 -4.198 1.982 -4.151 -2.870 0.246 -3.683 -2.748 -1.154 ML 185 183 6 188 6 1 1 360 795 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 359 794 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 354 789 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 362 796 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 362 796 -5.006 -0.071 -8.517 -6.685 -7.791 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 95 c g - - MP 190 189 6 194 6 2 2 361 795 -15.525 -3.955 -0.096 -14.241 -14.521 -14.916 -5.432 -5.798 -8.758 0.621 -2.574 -5.286 2.733 -8.792 -8.779 2.550 -4.372 -4.636 0.232 -4.351 -1.435 -4.901 ML 191 189 6 194 6 1 1 358 793 -6.727 -7.073 -0.808 -1.482 -6.923 -4.452 0.975 -0.842 -0.583 -0.307 MR 192 189 6 194 6 1 1 357 791 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 353 787 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 361 795 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 366 800 -0.195 -8.554 -3.020 -12.145 -13.251 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 85 G C - - MP 196 195 6 200 6 2 2 358 793 -15.430 -15.369 -0.000 -14.146 -14.425 -14.820 -9.418 -2.550 -2.158 -3.755 -10.359 -5.984 2.036 -9.923 -9.672 3.317 -3.024 -0.250 -5.696 -9.093 -1.181 -6.099 ML 197 195 6 200 6 1 1 356 791 -12.465 -12.811 -7.526 -0.010 -12.661 -10.191 -7.234 1.991 -7.699 -6.276 MR 198 195 6 200 6 1 1 355 789 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 352 786 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 357 792 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 357 791 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 84 C G - - MP 202 201 6 206 4 2 2 356 791 -14.649 -14.856 -0.000 -13.270 -5.760 -3.887 -6.766 0.596 -3.637 -10.581 3.539 -3.847 -9.596 -3.790 -10.109 1.108 -1.633 -9.921 -4.270 -6.253 ML 203 201 6 206 4 1 1 355 790 -9.555 -9.737 -0.008 -8.467 -6.401 -8.163 1.992 -7.161 MR 204 201 6 206 4 1 1 352 787 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 351 785 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 356 790 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 356 790 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - - - ML 208 207 6 210 3 1 1 354 789 -15.656 -0.000 -14.310 -6.092 1.452 -9.836 0.321 D 209 207 6 210 3 0 0 349 783 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 354 789 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - - - ML 211 210 3 213 3 1 1 353 788 -15.656 -0.000 -14.310 -6.435 -4.877 -6.455 1.979 D 212 210 3 213 3 0 0 346 780 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 353 787 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - u - - - ML 214 213 3 216 3 1 1 352 787 -15.656 -0.000 -14.310 -0.013 -0.021 -0.021 0.054 D 215 213 3 216 3 0 0 343 777 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 352 786 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - u - - - ML 217 216 3 219 3 1 1 351 786 -15.656 -0.000 -14.310 0.004 -0.004 -0.004 0.004 D 218 216 3 219 3 0 0 337 771 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 351 785 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - u - - - ML 220 219 3 222 3 1 1 350 785 -15.656 -0.000 -14.310 0.004 -0.004 -0.004 0.004 D 221 219 3 222 3 0 0 325 760 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 349 783 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - - - ML 223 222 3 225 3 1 1 349 784 -2.022 -0.408 -14.310 1.948 -5.201 -3.297 -6.177 D 224 222 3 225 3 0 0 281 715 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 381 816 -0.061 -4.590 -15.623 0.000 0.000 0.000 0.000 [ MATL 41 ] 83 - C - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 -1.713 1.781 -6.595 -2.007 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Asp ACC euk-Asp-r2-031616 LENG 72 MAXL 414 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 07:17:26 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Asp-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Asp-r2-031616.sto NSEQ 782 EFFN 15.700020 CKSUM 744627801 STATS LOCAL MSV -8.0964 0.71883 STATS LOCAL VITERBI -9.0780 0.71883 STATS LOCAL FORWARD -3.5939 0.71883 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58346 1.40217 1.22215 1.37011 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 0.00000 * 1 2.73749 2.10155 2.16024 0.35996 1 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 2 2.96268 0.39485 2.34277 1.72329 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 3 2.73823 0.47250 2.49578 1.47211 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 4 2.73960 1.05321 1.75246 0.88373 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 5 2.19121 0.90669 2.30997 0.95427 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 6 1.80445 2.19445 0.52059 2.04142 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01678 4.87862 4.70731 1.46634 0.26236 1.09861 0.40547 7 1.48872 2.60213 0.79576 1.39037 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01535 4.87720 4.87720 1.46634 0.26236 1.15904 0.37657 8 3.53826 3.18829 3.78554 0.09762 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03692 3.55335 4.87720 0.46726 0.98542 0.98772 0.46589 9 0.42994 4.33929 1.14629 3.98493 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.03249 3.71492 4.87862 0.53874 0.87583 1.09861 0.40547 10 2.45916 3.16977 0.18981 3.09295 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 11 3.51782 1.90449 3.37603 0.23920 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 12 1.11469 1.25725 2.23185 1.27218 15 a - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 13 3.22653 1.05937 3.17831 0.55866 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 14 0.02172 5.34338 4.51729 5.15179 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 15 2.70051 4.61826 0.10189 3.92038 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 16 2.88689 2.83722 3.25561 0.16593 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.44358 4.87862 0.42287 1.06468 1.09861 0.40547 17 4.36390 5.05739 0.02571 5.06891 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 18 4.18225 4.78618 0.03446 4.57895 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 19 2.40402 2.16534 3.48208 0.26894 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04084 3.93565 3.88820 0.65372 0.73419 1.09861 0.40547 20 2.17877 1.61928 2.00090 0.59138 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01553 4.86567 4.86567 1.46634 0.26236 0.55551 0.85279 21 0.03900 4.41716 4.28593 4.38815 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 22 2.15757 3.28092 0.34033 2.00052 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 23 1.70981 2.44034 0.96353 1.04861 28 g - - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 24 0.27171 3.47197 1.77242 3.29832 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.02254 4.22129 4.87862 0.83616 0.56805 1.09861 0.40547 25 3.09934 0.91821 3.02610 0.67888 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 26 1.62459 1.31563 1.75406 1.01713 32 u - - , 1.38629 1.38629 1.38629 1.38629 0.02211 4.25044 4.87862 0.85725 0.55222 1.09861 0.40547 27 2.65173 0.84075 2.11045 0.97577 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.03134 3.76176 4.87862 0.56146 0.84485 1.09861 0.40547 28 2.04993 0.86311 1.41492 1.57764 36 c - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 29 1.99007 1.01962 1.15024 1.68188 37 c - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 30 2.21362 1.56948 0.50869 2.51009 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 31 2.10806 0.57898 1.74646 1.94024 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 32 3.34621 0.43643 4.13780 1.19572 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 33 3.69468 3.45695 4.13957 0.07506 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 34 1.31925 1.47561 1.48803 1.27938 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 35 1.31223 1.46758 1.47911 1.30027 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 36 1.31223 1.46758 1.47911 1.30027 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 37 0.07048 4.05423 3.37866 4.09757 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.24927 1.54637 4.87862 3.16821 0.04299 1.09861 0.40547 38 2.53028 0.21172 4.09488 2.35902 83 C - - _ 1.38629 1.38629 1.38629 1.38629 0.07190 4.87862 2.78435 1.46634 0.26236 1.09861 0.40547 39 2.11820 2.61887 0.52838 1.52644 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.01622 4.82294 4.82294 1.46634 0.26236 0.22019 1.62132 40 3.00309 0.57917 1.44239 1.87315 85 C - - > 1.38629 1.38629 1.38629 1.38629 0.07221 2.78435 4.84127 1.92768 0.15722 1.09861 0.40547 41 1.89052 1.20141 0.93627 1.85694 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.02384 4.13837 4.87833 0.77902 0.61407 1.07387 0.41807 42 1.83202 1.50392 0.79989 1.78215 97 g - - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 43 1.42095 2.21196 0.57374 2.45787 98 G - - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 44 0.58516 2.65025 1.79006 1.58281 99 A - - , 1.38629 1.38629 1.38629 1.38629 0.16096 1.95854 4.87862 1.34996 0.30009 1.09861 0.40547 45 4.03605 4.92480 0.03830 4.37042 127 G - - , 1.38629 1.38629 1.38629 1.38629 0.02013 4.87862 4.39650 1.46634 0.26236 1.09861 0.40547 46 0.40389 3.10407 1.71592 2.22920 128 A - - , 1.38629 1.38629 1.38629 1.38629 0.01541 4.87390 4.87390 1.46634 0.26236 0.80422 0.59319 47 3.87847 0.12753 2.98607 3.02488 129 C - - , 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 48 3.79447 0.11353 3.41752 2.95593 130 C - - < 1.38629 1.38629 1.38629 1.38629 0.01619 4.87862 4.77292 1.46634 0.26236 1.09861 0.40547 49 2.05015 0.80712 1.32470 1.83722 131 c - - < 1.38629 1.38629 1.38629 1.38629 0.01534 4.87778 4.87778 1.46634 0.26236 1.02940 0.44196 50 1.50547 3.03305 0.39163 2.91946 132 G - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.24271 4.87862 0.85161 0.55639 1.09861 0.40547 51 2.50785 3.39192 0.17167 3.15462 134 G - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 52 3.64537 4.44355 0.05152 4.39379 135 G - - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.15958 4.85260 0.79313 0.60226 1.09861 0.40547 53 3.69772 3.68260 4.08283 0.06913 137 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01534 4.87842 4.87842 1.46634 0.26236 1.08134 0.41422 54 4.52105 3.97237 5.05373 0.03676 138 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01557 4.87862 4.84876 1.46634 0.26236 1.09861 0.40547 55 4.05800 0.09390 4.40497 2.81129 139 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01534 4.87839 4.87839 1.46634 0.26236 1.07880 0.41552 56 0.52789 4.04645 0.97675 4.12663 140 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 57 0.02388 5.19974 4.62863 4.78970 141 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 58 3.16240 2.87953 3.53420 0.13658 142 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 59 3.16411 1.15492 3.78110 0.47825 143 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 60 4.53329 0.06767 4.08782 3.27259 144 C - - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 61 3.43710 0.22095 3.19960 2.07699 145 C - - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 62 3.22361 0.50292 2.91247 1.20035 146 C - - > 1.38629 1.38629 1.38629 1.38629 0.01623 4.87862 4.76879 1.46634 0.26236 1.09861 0.40547 63 2.08918 1.40113 0.73393 1.89796 147 g - - > 1.38629 1.38629 1.38629 1.38629 0.03296 3.69653 4.87774 0.53046 0.88755 1.02675 0.44343 64 3.13484 3.79582 0.10120 3.49745 149 G - - > 1.38629 1.38629 1.38629 1.38629 0.02979 3.89629 4.70731 0.63169 0.75863 1.09861 0.40547 65 1.47467 1.08774 2.40356 1.06777 151 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01535 4.87720 4.87720 1.46634 0.26236 0.98772 0.46589 66 2.23984 0.68168 2.01251 1.37000 152 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 67 1.57915 2.43443 0.56894 1.96558 153 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 68 2.09522 1.87213 0.45035 2.45621 154 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 69 1.65562 2.65196 0.41802 2.52370 155 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 70 2.07766 2.48030 0.31829 2.75412 157 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01533 4.87862 4.87862 1.46634 0.26236 1.09861 0.40547 71 0.40408 2.26880 1.86382 2.60513 158 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03980 3.46055 4.87862 1.16768 0.37264 1.09861 0.40547 72 0.95965 3.96612 0.55703 3.68422 162 G - - : 1.38629 1.38629 1.38629 1.38629 0.00770 4.87099 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Cys ACC euk-Cys-r2-031616 STATES 230 NODES 61 CLEN 72 W 501 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 07:33:51 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Cys-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Cys-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Cys-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Cys-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Cys-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Cys-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Cys-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1170 EFFN 1170.000000 CKSUM 2537362871 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.5523 0.71882 ECMLC 0.73900 -6.21555 2.18704 1600000 596972 0.002010 ECMGC 0.34237 -41.16232 -28.57408 1600000 29771 0.013436 ECMLI 0.65766 -6.83328 2.45670 1600000 540213 0.002221 ECMGI 0.37504 -37.42254 -25.95055 1600000 29552 0.013535 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 501 1033 -15.120 -16.366 -0.028 -5.691 IL 1 1 2 1 4 21 43 502 1034 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 45 503 1035 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 161 - U - - MR 3 2 3 5 5 26 51 502 1034 -5.300 -0.037 -14.957 -15.169 -16.060 -1.482 -1.560 -3.828 1.693 D 4 2 3 5 5 18 41 494 1026 -10.103 -5.093 -7.729 -9.160 -0.054 IR 5 5 3 5 5 26 51 504 1036 -0.603 -1.557 -11.764 -9.931 -11.037 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 157 G C - - MP 6 5 3 10 6 25 50 501 1033 -16.075 -6.718 -0.014 -14.791 -15.071 -15.466 -10.046 -4.847 -6.237 -1.280 -10.995 -4.868 -4.736 -10.554 -4.676 3.717 -5.010 0.524 -0.444 -3.972 -8.068 -8.829 ML 7 5 3 10 6 21 44 499 1030 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 21 44 499 1030 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 18 41 494 1025 -14.443 -13.141 -8.938 -9.620 -9.638 -0.007 IL 10 10 5 10 6 21 44 499 1031 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 42 495 1027 -5.421 -3.508 -8.932 -7.100 -0.185 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 155 G C - - MP 12 11 6 16 6 25 50 499 1031 -16.061 -16.001 -0.000 -14.777 -15.057 -15.452 -5.665 -3.200 -5.280 -1.250 -3.586 -8.216 0.917 -10.534 -5.783 3.471 -4.402 0.563 -0.503 -3.746 -4.796 -8.812 ML 13 11 6 16 6 21 44 497 1028 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 21 44 497 1029 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 17 41 494 1025 -15.006 -1.718 -9.502 -10.184 -10.201 -0.529 IL 16 16 5 16 6 22 45 498 1030 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 48 498 1030 -5.342 -0.056 -8.853 -7.021 -8.127 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 153 G C - - MP 18 17 6 22 6 23 48 497 1029 -16.074 -16.013 -0.016 -14.790 -6.507 -15.465 -10.039 -3.408 -5.060 -0.073 -10.980 -7.733 -0.088 0.117 -5.011 3.408 -4.975 -1.112 0.645 -6.024 -2.535 -8.824 ML 19 17 6 22 6 20 43 495 1027 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 21 43 496 1027 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 40 491 1023 -14.484 -13.182 -3.973 -9.661 -9.679 -0.099 IL 22 22 5 22 6 21 44 496 1028 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 45 496 1028 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 152 G C - - MP 24 23 6 28 6 21 46 495 1027 -16.060 -15.999 -0.001 -11.742 -15.056 -15.451 -10.064 -2.906 -9.898 -1.149 -10.623 -10.514 1.317 -7.517 -6.105 3.280 -3.827 -0.415 0.573 -9.778 -0.188 -8.826 ML 25 23 6 28 6 19 42 493 1025 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 21 44 495 1027 -0.088 -9.791 -5.699 -9.769 -4.903 -7.983 -5.196 1.964 -5.699 -4.292 D 27 23 6 28 6 17 40 491 1023 -14.392 -13.090 -6.679 -1.011 -9.587 -1.022 IL 28 28 5 28 6 20 44 494 1026 -6.433 -6.696 -0.041 -8.351 -9.128 -8.788 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 43 494 1026 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 151 G C - - MP 30 29 6 34 6 19 44 493 1025 -16.076 -16.015 -0.001 -10.756 -15.071 -15.466 -9.308 -2.938 -9.346 -1.314 -5.069 -7.828 1.713 -5.921 -6.575 3.178 -7.951 -1.773 1.077 -2.668 -1.421 -2.856 ML 31 29 6 34 6 17 41 491 1023 -10.354 -10.700 -5.415 -0.043 -10.550 -8.080 -4.443 -6.007 1.967 -5.177 MR 32 29 6 34 6 16 39 491 1022 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 17 39 491 1023 -13.384 -12.082 -0.067 -8.562 -8.579 -4.654 IL 34 34 5 34 6 18 40 492 1024 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 40 492 1024 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 150 U G - - MP 36 35 6 40 6 17 42 491 1023 -16.088 -16.027 -0.002 -9.373 -15.084 -15.479 -9.489 -9.436 -4.869 -0.186 -4.213 -10.438 1.480 -5.489 -6.513 0.438 -5.706 -2.613 0.592 -5.343 3.169 -2.806 ML 37 35 6 40 6 16 40 490 1022 -10.428 -10.774 -0.048 -5.183 -10.624 -8.154 -4.649 -4.238 -5.462 1.958 MR 38 35 6 40 6 15 38 489 1021 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 36 487 1019 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 39 490 1022 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 39 490 1022 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 149 A U - - MP 42 41 6 46 4 15 40 489 1021 -15.324 -15.531 -0.000 -13.945 -4.603 -5.722 -3.634 3.289 -11.022 -4.899 -6.088 -10.581 -6.021 1.311 -4.609 0.779 0.781 -9.746 -5.028 -4.952 ML 43 41 6 46 4 13 37 487 1019 -5.266 -5.448 -2.014 -0.507 1.680 -2.205 -1.853 -1.731 MR 44 41 6 46 4 14 37 488 1019 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 36 487 1018 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 39 489 1021 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 38 489 1020 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 48 47 6 50 3 13 38 487 1019 -16.234 -0.000 -14.888 -6.556 -5.141 -4.294 1.967 D 49 47 6 50 3 12 36 486 1018 -8.549 -0.206 -2.941 IL 50 50 3 50 3 14 37 488 1019 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 51 50 3 53 2 12 37 486 1018 -6.806 -0.013 1.751 -6.635 -0.708 -6.319 D 52 50 3 53 2 11 36 485 1017 -8.445 -0.004 IL 53 53 3 53 2 12 37 486 1018 -5.428 -0.034 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 11 36 485 1017 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 3 127 268 -16.236 -0.000 -14.890 IL 56 56 2 56 3 1 3 128 269 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 101 - A - - - ML 57 56 2 59 3 1 3 127 268 -16.236 -0.076 -4.280 1.658 -3.249 -4.243 -0.543 D 58 56 2 59 3 0 0 118 259 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 2 127 268 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 102 - G - - - ML 60 59 3 62 3 1 2 126 267 -3.402 -0.143 -14.814 -2.035 -11.448 1.877 -3.597 D 61 59 3 62 3 0 0 72 213 -13.384 -0.016 -6.546 IL 62 62 3 62 3 1 1 143 284 -0.189 -3.447 -5.020 0.000 0.000 0.000 0.000 [ MATL 45 ] 124 - G - - - ML 63 62 3 65 3 1 1 28 46 -6.561 -0.136 -3.661 -3.238 -12.106 1.937 -3.931 D 64 62 3 65 3 0 0 26 45 -12.236 -7.749 -0.007 IL 65 65 3 65 3 1 1 28 47 -4.514 -0.075 -7.215 0.000 0.000 0.000 0.000 [ MATL 46 ] 126 - U - - - ML 66 65 3 68 3 1 1 27 45 -16.083 -0.000 -14.737 -2.500 -3.421 -3.570 1.866 D 67 65 3 68 3 0 0 26 45 -14.341 -0.008 -7.504 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 127 - C - - - ML 69 68 3 71 5 1 1 26 44 -15.169 -0.001 -10.965 -15.196 -16.088 -10.236 1.854 -5.163 -1.487 D 70 68 3 71 5 0 0 25 43 -5.555 -0.907 -4.816 -1.768 -3.104 IL 71 71 3 71 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 128 148 C G - - MP 72 71 3 76 6 2 2 25 43 -16.102 -6.591 -0.015 -14.818 -15.097 -15.492 -10.401 -10.084 -5.730 0.294 -3.414 -5.300 3.375 -5.025 -10.262 1.278 -10.773 0.344 -1.397 -10.576 -2.699 -8.980 ML 73 71 3 76 6 1 1 25 43 -7.092 -7.438 -0.584 -1.847 -7.288 -4.818 -0.397 -0.629 -1.041 1.076 MR 74 71 3 76 6 1 1 25 44 -7.314 -6.043 -1.952 -6.021 -0.618 -4.235 0.108 -0.770 0.573 -0.237 D 75 71 3 76 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 24 42 -5.557 -0.048 -9.068 -7.236 -8.342 0.000 0.000 0.000 0.000 [ MATP 49 ] 129 146 C G - - MP 78 77 6 82 6 2 2 23 41 -16.102 -16.042 -0.000 -14.818 -15.098 -15.493 -10.450 -10.153 -2.855 -2.501 -3.495 -5.370 3.613 -5.632 -10.305 -2.289 -6.347 -7.722 0.867 -10.630 0.329 -5.980 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 24 43 -7.314 -6.043 -1.952 -6.021 -0.618 -4.235 0.108 -0.770 0.573 -0.237 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 130 145 g c - - MP 84 83 6 88 6 2 2 21 39 -6.993 -16.042 -0.012 -14.818 -15.098 -15.493 -5.566 -9.869 -6.304 -0.999 -3.044 -8.269 2.009 -7.700 -10.009 2.096 -10.534 -4.624 1.911 -7.299 1.599 -2.349 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 42 -7.314 -6.043 -1.117 -6.021 -1.155 -4.235 0.108 -0.770 0.573 -0.237 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 21 39 -6.014 -6.277 -0.056 -7.932 -8.708 -8.368 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 132 144 G C - - MP 90 89 6 94 6 2 2 19 37 -16.103 -16.042 -0.000 -14.818 -15.098 -15.493 -10.071 -3.771 -5.435 1.175 -11.020 -6.572 -1.609 -4.949 -6.775 3.530 -5.144 -0.716 0.077 -6.385 -8.094 -6.616 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 133 143 G C - - MP 96 95 6 100 4 2 2 17 35 -15.326 -15.533 -0.000 -13.947 -14.085 -1.258 -16.670 -8.155 -15.690 -3.936 -9.962 -16.008 -6.486 3.906 -4.770 -2.823 -1.961 -3.662 -12.423 -15.921 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 134 - U - - - ML 102 101 6 104 3 1 1 14 32 -7.055 -0.011 -14.890 -9.648 -5.737 -6.021 1.987 D 103 101 6 104 3 0 0 17 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 15 33 -4.117 -0.099 -6.817 0.000 0.000 0.000 0.000 [ MATL 54 ] 136 - U - - - ML 105 104 3 107 3 1 1 13 31 -16.236 -0.000 -14.890 -6.334 -5.785 -6.648 1.985 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 137 - C - - - ML 108 107 3 110 3 1 1 11 30 -16.236 -0.000 -14.890 -6.361 1.984 -6.322 -5.607 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 138 - A - - - ML 111 110 3 113 3 1 1 10 28 -16.236 -0.000 -14.890 1.298 -6.062 0.602 -6.827 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 139 - A - - - ML 114 113 3 116 3 1 1 8 27 -16.236 -0.000 -14.890 1.970 -6.783 -5.412 -4.367 D 115 113 3 116 3 0 0 14 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 140 - A - - - ML 117 116 3 119 3 1 1 6 12 -6.771 -0.015 -9.643 1.482 -3.322 -2.681 -0.073 D 118 116 3 119 3 0 0 5 12 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 7 13 -4.360 -0.083 -7.061 0.000 0.000 0.000 0.000 [ MATL 59 ] 142 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -5.532 0.079 -5.764 1.538 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 462 994 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 0 15 462 994 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 33 56 -0.000 -14.230 -13.638 -14.278 [ MATP 15 ] 12 32 G C - - MP 127 126 1 131 6 2 2 33 56 -7.060 -16.042 -0.011 -14.818 -15.098 -15.493 -10.074 -4.403 -9.892 -0.536 -11.023 -6.300 -2.735 -5.700 -1.430 3.802 -5.821 -0.875 -2.997 -4.012 -8.097 -8.858 ML 128 126 1 131 6 1 1 31 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 31 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 29 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 32 55 -5.953 -6.216 -0.058 -7.872 -8.648 -8.308 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 32 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 31 C G - - MP 133 132 6 137 6 2 2 31 54 -16.103 -16.042 -0.000 -14.818 -15.098 -15.493 -13.155 -13.437 -4.415 -9.674 -4.257 -4.273 3.902 -11.738 -12.576 -9.646 -4.952 -11.842 -0.446 -12.989 -2.963 -11.378 ML 134 132 6 137 6 1 1 29 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 29 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 31 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 30 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 30 U A - - MP 139 138 6 143 6 2 2 29 52 -16.103 -16.042 -0.000 -14.818 -15.098 -15.493 -3.699 -4.342 -10.457 -4.293 -4.612 -11.290 0.984 -9.972 -6.417 -1.501 -10.827 -7.737 3.733 -6.639 -3.643 -4.508 ML 140 138 6 143 6 1 1 28 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 28 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 26 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 29 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 28 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 29 C G - - MP 145 144 6 149 4 2 2 27 50 -15.326 -15.533 -0.000 -13.947 -0.980 -5.524 -7.457 -2.468 -1.198 -4.911 3.639 -5.592 0.253 -7.373 -5.191 -9.381 -1.162 -11.895 -0.587 -10.287 ML 146 144 6 149 4 1 1 27 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 26 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 25 49 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 28 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 27 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 151 150 6 153 3 1 1 25 48 -16.236 -0.000 -14.890 1.988 -6.432 -6.323 -6.598 D 152 150 6 153 3 0 0 23 46 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 26 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - G - - - ML 154 153 3 156 3 1 1 24 47 -16.236 -0.000 -14.890 -3.496 -6.258 1.960 -6.838 D 155 153 3 156 3 0 0 22 45 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 25 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - U - - - ML 157 156 3 159 3 1 1 23 46 -3.739 -0.112 -14.890 -2.632 -0.337 -0.269 1.149 D 158 156 3 159 3 0 0 20 43 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 25 49 -1.139 -0.875 -10.780 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - G - - - ML 160 159 3 162 3 1 1 10 29 -16.236 -0.000 -14.890 -1.782 -6.624 1.882 -6.361 D 161 159 3 162 3 0 0 16 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 163 162 3 165 3 1 1 9 27 -16.236 -0.000 -14.890 -5.092 -5.833 1.983 -11.483 D 164 162 3 165 3 0 0 15 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 166 165 3 168 3 1 1 7 13 -2.390 -0.305 -14.890 -4.072 -2.268 -3.235 1.859 D 167 165 3 168 3 0 0 5 11 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 7 13 -4.412 -0.070 -11.315 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.973 -4.778 -6.268 -5.407 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 0 447 979 -16.236 -0.000 -14.890 IL 174 174 2 174 3 1 1 448 980 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - A - - - ML 175 174 2 177 5 1 1 447 979 -15.169 -0.000 -14.985 -15.197 -16.088 1.480 -5.847 0.233 -5.788 D 176 174 2 177 5 0 0 444 976 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 447 978 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 34 100 U G - - MP 178 177 3 182 6 2 2 446 978 -16.103 -5.999 -0.023 -14.818 -15.098 -15.493 -6.055 0.425 -3.100 0.714 -7.525 -8.388 -0.680 -2.191 -5.965 0.219 -5.927 0.618 -0.383 -3.747 3.074 -4.703 ML 179 177 3 182 6 1 1 443 975 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 443 975 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 437 969 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 445 977 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 446 978 -1.037 -0.976 -10.549 -8.716 -9.822 0.000 0.000 0.000 0.000 [ MATP 30 ] 35 97 U A - - MP 184 183 6 188 6 2 2 444 976 -16.103 -6.887 -0.026 -14.818 -6.745 -15.493 -10.390 -10.095 -10.392 -0.855 0.167 -11.236 1.780 -9.916 -6.837 -0.348 -5.795 -0.071 3.119 -5.174 -1.368 -5.508 ML 185 183 6 188 6 1 1 441 973 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 441 973 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 436 967 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 443 975 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 443 975 -5.298 -0.058 -8.809 -6.977 -8.083 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 95 U A - - MP 190 189 6 194 6 2 2 442 974 -16.089 -16.029 -0.000 -14.805 -15.085 -15.480 -10.774 -10.489 -10.728 1.462 -9.552 -11.502 0.756 -10.229 -10.606 1.179 -11.088 -8.077 3.206 -7.967 -5.655 -5.028 ML 191 189 6 194 6 1 1 439 971 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 440 971 -10.865 -9.594 -5.503 -9.572 -0.044 -7.786 -4.405 -5.962 1.967 -5.138 D 193 189 6 194 6 0 0 434 966 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 441 973 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 441 972 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 94 G C - - MP 196 195 6 200 6 2 2 440 972 -16.089 -6.981 -0.012 -14.805 -15.085 -15.480 -14.071 -3.241 -16.651 -8.141 -15.675 -5.154 -2.608 -15.992 -4.637 3.854 -7.213 0.199 -10.319 -4.395 -12.408 -15.900 ML 197 195 6 200 6 1 1 438 969 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 439 970 -10.865 -9.594 -0.068 -9.572 -4.706 -7.786 -4.496 -4.097 -5.304 1.953 D 199 195 6 200 6 0 0 433 964 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 439 971 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 439 971 -5.205 -0.062 -8.716 -6.884 -7.990 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 92 A U - - MP 202 201 6 206 4 2 2 438 970 -15.326 -15.533 -0.000 -13.947 -4.739 -3.121 -6.676 3.865 -14.416 -15.596 -0.352 -3.997 -11.903 -1.834 -4.566 -4.923 -9.841 -13.642 -4.088 -10.940 ML 203 201 6 206 4 1 1 436 968 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 434 965 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 432 963 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 437 969 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 437 969 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - C - - - ML 208 207 6 210 3 1 1 436 968 -16.236 -0.000 -14.890 -5.837 1.586 -6.528 -0.044 D 209 207 6 210 3 0 0 430 961 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 436 968 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - U - - - ML 211 210 3 213 3 1 1 435 967 -16.236 -0.000 -14.890 -6.456 -4.975 -6.352 1.980 D 212 210 3 213 3 0 0 427 958 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 435 966 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - c - - - ML 214 213 3 216 3 1 1 434 966 -16.236 -0.000 -14.890 -0.011 0.037 -0.016 -0.010 D 215 213 3 216 3 0 0 422 954 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 433 965 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - u - - - ML 217 216 3 219 3 1 1 433 965 -16.236 -0.000 -14.890 0.003 -0.003 -0.003 0.003 D 218 216 3 219 3 0 0 415 947 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 432 963 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - u - - - ML 220 219 3 222 3 1 1 432 964 -16.236 -0.000 -14.890 0.003 -0.003 -0.003 0.003 D 221 219 3 222 3 0 0 401 933 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 430 962 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - G - - - ML 223 222 3 225 3 1 1 431 963 -1.837 -0.474 -14.890 0.300 -4.897 1.436 -5.060 D 224 222 3 225 3 0 0 343 875 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 467 998 -0.050 -4.876 -16.672 0.000 0.000 0.000 0.000 [ MATL 40 ] 91 - A - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 1.740 -3.293 -5.223 -0.916 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Cys ACC euk-Cys-r2-031616 LENG 72 MAXL 494 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 07:33:52 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Cys-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Cys-r2-031616.sto NSEQ 1170 EFFN 13.911781 CKSUM 2537362871 STATS LOCAL MSV -8.2511 0.71882 STATS LOCAL VITERBI -8.8241 0.71882 STATS LOCAL FORWARD -3.8107 0.71882 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49344 1.45516 1.23274 1.38411 1.38629 1.38629 1.38629 1.38629 0.01464 4.92449 4.92449 1.46634 0.26236 0.00000 * 1 2.17888 2.97832 0.28453 2.48191 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02281 4.92449 4.18100 1.46634 0.26236 1.09861 0.40547 2 2.13932 2.12733 0.39442 2.41866 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01476 4.91644 4.91644 1.46634 0.26236 1.41178 0.27933 3 2.00459 2.07422 0.48820 2.07225 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01465 4.92401 4.92401 1.46634 0.26236 1.41178 0.27933 4 2.16352 1.88952 0.54570 1.86754 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01463 4.92507 4.92507 1.46634 0.26236 0.66829 0.71863 5 2.17648 1.62147 0.69431 1.66321 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01451 4.93317 4.93317 1.46634 0.26236 1.09861 0.40547 6 2.21048 1.43520 1.92093 0.68159 7 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 7 0.85248 2.66226 1.00895 1.97148 8 a - - ( 1.38629 1.38629 1.38629 1.38629 0.01566 4.94073 4.78116 1.46634 0.26236 1.09861 0.40547 8 3.54640 3.36328 3.68630 0.09268 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01442 4.93950 4.93950 1.46634 0.26236 0.99511 0.46153 9 0.21614 4.00334 1.86231 3.87220 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.02207 4.22119 4.94073 0.79279 0.60254 1.09861 0.40547 10 2.11161 2.92503 0.26984 2.78397 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02086 4.30555 4.94073 0.85214 0.55600 1.09861 0.40547 11 4.82243 0.05502 4.71202 3.31033 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 12 2.72551 1.55040 2.39375 0.46039 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 13 2.12592 0.60625 1.93335 1.65746 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 14 0.03038 4.74714 4.46029 4.63734 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 15 3.46435 4.72401 0.05334 4.44255 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 16 2.13248 1.61074 1.66993 0.70632 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08067 2.65421 4.94073 0.69001 0.69630 1.09861 0.40547 17 2.57624 4.31351 0.11440 3.98173 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 18 4.04361 4.88843 0.03341 4.85513 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 19 3.20393 2.69036 3.31845 0.15627 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.19274 1.78289 4.94073 0.12409 2.14812 1.09861 0.40547 20 0.04956 4.09170 4.18235 4.11152 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 21 1.58175 2.39266 0.54396 2.09919 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 22 0.50326 2.52562 1.44096 2.54162 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 23 3.46995 4.79527 0.04940 4.73117 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 24 2.82542 0.34499 2.75421 1.77888 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 25 0.39058 3.89415 1.27701 3.72537 33 A - - , 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 26 1.55816 1.83956 1.57938 0.85687 34 u - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 27 2.36138 1.21185 1.88610 0.78438 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.02243 4.94073 4.19776 1.46634 0.26236 1.09861 0.40547 28 1.80521 1.63623 1.76612 0.75533 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.01452 4.93282 4.93282 1.46634 0.26236 1.41152 0.27941 29 2.71973 3.30898 0.14872 3.33147 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01452 4.93282 4.93282 1.46634 0.26236 0.66854 0.71837 30 0.07500 3.73715 3.42127 4.14996 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 31 3.18891 0.35858 3.87676 1.42963 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 32 3.60659 3.39415 4.04836 0.08139 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 33 1.31320 1.45374 1.49284 1.29970 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 34 1.30741 1.47332 1.48587 1.29458 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 35 1.30741 1.47332 1.48587 1.29458 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 36 1.22054 3.51051 0.45064 3.27471 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.28835 1.41325 4.94073 3.36743 0.03509 1.09861 0.40547 37 0.24536 2.95254 3.39565 2.02608 91 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 38 4.35918 3.57316 3.60579 0.07045 92 U - - > 1.38629 1.38629 1.38629 1.38629 0.02116 4.28410 4.94073 0.83666 0.56767 1.09861 0.40547 39 3.55558 0.21816 3.16772 2.07676 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 40 0.81864 1.85155 1.51756 1.69976 95 a - - > 1.38629 1.38629 1.38629 1.38629 0.02169 4.24730 4.94073 0.81073 0.58795 1.09861 0.40547 41 0.79504 2.26142 1.20848 1.92700 97 a - - > 1.38629 1.38629 1.38629 1.38629 0.02793 3.89236 4.94073 0.94419 0.49265 1.09861 0.40547 42 1.85040 1.70187 0.86847 1.42342 100 g - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 43 0.31106 2.85773 3.14783 1.78984 101 A - - , 1.38629 1.38629 1.38629 1.38629 0.05946 4.94073 2.98425 1.46634 0.26236 1.09861 0.40547 44 2.63481 4.21426 0.12809 3.38999 102 G - - , 1.38629 1.38629 1.38629 1.38629 0.09884 2.44603 4.89634 2.05142 0.13760 0.25429 1.49372 45 3.27626 4.71743 0.07281 3.75002 124 G - - , 1.38629 1.38629 1.38629 1.38629 0.11361 4.14304 2.39122 0.74146 0.64706 1.11104 0.39931 46 2.77622 2.97756 3.37609 0.15943 126 U - - , 1.38629 1.38629 1.38629 1.38629 0.01574 4.85233 4.85233 1.46634 0.26236 0.14774 1.98524 47 3.89128 0.13815 4.12110 2.38173 127 C - - , 1.38629 1.38629 1.38629 1.38629 0.01441 4.94047 4.94047 1.46634 0.26236 1.09408 0.40774 48 2.18635 0.67123 1.50187 1.87158 128 C - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94059 4.94059 1.46634 0.26236 1.10540 0.40209 49 2.64609 0.51354 2.45905 1.40574 129 C - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94059 4.94059 1.46634 0.26236 1.10540 0.40209 50 2.35266 1.26564 1.42260 0.96302 130 u - - < 1.38629 1.38629 1.38629 1.38629 0.02117 4.28348 4.94059 0.83633 0.56792 1.08518 0.41225 51 1.73249 2.79617 0.40200 2.37374 132 G - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 52 2.51158 3.38027 0.17900 3.02179 133 G - - < 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 53 3.79156 3.55413 4.11360 0.06990 134 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02085 4.30619 4.94073 0.85260 0.55566 1.09861 0.40547 54 3.64273 3.50458 4.11328 0.07536 136 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 55 4.33960 0.04421 4.57608 3.91656 137 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 56 0.50246 3.99217 1.03427 3.86245 138 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 57 0.04865 4.39208 4.10816 3.98046 139 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 58 0.46625 2.69064 2.61327 1.46308 140 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02332 4.20851 4.80640 0.78422 0.60968 1.09861 0.40547 59 3.21372 1.44268 3.73436 0.35723 142 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01442 4.93971 4.93971 1.46634 0.26236 1.01109 0.45228 60 3.26946 0.18566 3.23273 2.38629 143 C - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 61 2.53539 0.47254 2.63495 1.48887 144 C - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 62 1.39565 1.49211 0.89832 2.11879 145 g - - > 1.38629 1.38629 1.38629 1.38629 0.01440 4.94073 4.94073 1.46634 0.26236 1.09861 0.40547 63 1.74339 2.61680 0.40240 2.48499 146 G - - > 1.38629 1.38629 1.38629 1.38629 0.02375 4.13968 4.88679 0.73915 0.64917 1.09861 0.40547 64 2.08179 1.80753 0.62433 1.73946 148 G - - > 1.38629 1.38629 1.38629 1.38629 0.01566 4.94034 4.78076 1.46634 0.26236 1.06297 0.42377 65 2.10849 1.26087 2.42440 0.67995 149 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02314 4.93950 4.15286 1.46634 0.26236 0.99511 0.46153 66 1.77532 2.07234 0.56753 1.98229 150 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01464 4.92452 4.92452 1.46634 0.26236 1.37282 0.29221 67 1.90532 0.74375 1.48467 1.90165 151 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01463 4.92486 4.92486 1.46634 0.26236 1.38986 0.28650 68 2.21110 0.63490 1.63063 1.80407 152 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01465 4.92401 4.92401 1.46634 0.26236 1.41178 0.27933 69 2.25146 0.55531 2.21184 1.55418 153 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02232 4.21274 4.92401 1.46634 0.26236 0.66829 0.71863 70 2.59180 0.50738 2.03187 1.65050 155 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01464 4.92449 4.92449 1.46634 0.26236 1.09861 0.40547 71 2.67462 0.38652 2.79026 1.65944 157 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03654 3.55397 4.92438 1.17130 0.37101 1.09861 0.40547 72 2.27526 2.30909 3.26146 0.27503 161 U - - : 1.38629 1.38629 1.38629 1.38629 0.00735 4.91709 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Gln ACC euk-Gln-r2-031616 STATES 230 NODES 61 CLEN 72 W 595 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 07:57:20 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Gln-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Gln-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gln-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gln-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gln-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gln-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Gln-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1162 EFFN 1162.000000 CKSUM 165419657 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.4743 0.71880 ECMLC 0.76608 -6.00263 2.11065 1600000 600467 0.001998 ECMGC 0.36314 -43.54316 -31.86604 1600000 27776 0.014401 ECMLI 0.72367 -6.10788 2.38495 1600000 560219 0.002142 ECMGI 0.37871 -40.49108 -29.30909 1600000 27616 0.014484 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 595 1234 -15.110 -16.356 -0.001 -11.660 IL 1 1 2 1 4 19 41 597 1236 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 43 598 1237 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 175 - U - - MR 3 2 3 5 5 26 52 597 1236 -5.317 -0.037 -14.974 -15.187 -16.078 -0.267 -3.646 -1.140 1.398 D 4 2 3 5 5 17 38 592 1231 -5.647 -1.002 -3.274 -4.705 -1.560 IR 5 5 3 5 5 23 51 598 1238 -0.603 -1.557 -11.765 -9.933 -11.039 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 171 G C - - MP 6 5 3 10 6 26 51 595 1235 -16.093 -16.032 -0.001 -10.662 -15.088 -15.483 -12.707 -4.467 -13.036 -2.855 -13.888 -11.629 -3.024 -13.542 -11.726 3.842 -6.818 -2.957 0.266 -6.030 -10.872 -12.001 ML 7 5 3 10 6 19 41 593 1232 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 40 592 1231 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 36 587 1226 -9.495 -8.193 -3.990 -4.672 -4.690 -0.227 IL 10 10 5 10 6 19 42 594 1233 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 42 594 1233 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 170 G C - - MP 12 11 6 16 6 25 50 593 1233 -16.092 -16.031 -0.000 -14.808 -15.087 -15.482 -10.138 -4.320 -9.960 -3.599 -11.085 -5.567 0.848 -10.648 -4.035 3.741 -6.999 -2.886 -3.725 -4.593 -1.530 -8.926 ML 13 11 6 16 6 19 41 592 1231 -7.236 -7.582 -0.517 -1.991 -7.432 -4.962 -0.515 -0.712 -1.171 1.167 MR 14 11 6 16 6 18 40 590 1229 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 14 36 585 1225 -9.495 -8.193 -3.990 -4.672 -4.690 -0.227 IL 16 16 5 16 6 19 41 592 1231 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 42 592 1231 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 169 U A - - MP 18 17 6 22 6 24 48 591 1231 -16.093 -16.032 -0.000 -14.808 -15.088 -15.483 -5.307 -10.290 -10.557 -3.338 -1.873 -11.367 1.075 -10.065 -5.187 0.005 -10.922 -7.866 3.612 -5.845 -2.246 -9.145 ML 19 17 6 22 6 18 40 589 1228 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 40 589 1228 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 36 585 1224 -9.495 -8.193 -3.990 -4.672 -4.690 -0.227 IL 22 22 5 22 6 19 41 590 1229 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 41 590 1229 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 168 u g - - MP 24 23 6 28 6 22 46 589 1229 -16.093 -16.032 -0.000 -12.479 -15.088 -15.483 -10.365 -10.075 -7.205 -1.101 -2.121 -11.213 1.798 -5.845 -10.231 0.373 -4.313 -1.791 1.924 -7.554 2.667 -6.253 ML 25 23 6 28 6 18 39 587 1226 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 39 587 1226 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 14 36 584 1223 -9.495 -8.193 -1.604 -4.672 -4.690 -0.765 IL 28 28 5 28 6 19 40 588 1228 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 40 588 1227 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 167 C G - - MP 30 29 6 34 6 20 44 587 1227 -7.052 -7.052 -0.022 -14.808 -15.088 -15.483 -2.051 -10.098 -10.397 -4.479 -5.354 -11.240 3.397 -5.815 -10.256 1.752 -8.107 -0.387 -1.153 -10.580 -2.206 -1.584 ML 31 29 6 34 6 17 39 586 1225 -6.556 -6.902 -0.951 -1.311 -6.752 -4.282 0.049 0.293 -0.641 0.136 MR 32 29 6 34 6 16 39 585 1224 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 36 582 1221 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 19 42 586 1226 -5.951 -6.214 -0.058 -7.869 -8.645 -8.306 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 42 586 1226 -5.147 -0.064 -8.658 -6.826 -7.932 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 165 C G - - MP 36 35 6 40 6 18 42 585 1225 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -10.392 -10.093 -5.537 -2.906 -4.021 -11.236 3.206 -5.712 -10.250 -0.496 -5.557 -4.108 2.427 -10.575 -2.370 -2.532 ML 37 35 6 40 6 16 38 584 1223 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 38 583 1222 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 36 581 1220 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 39 585 1224 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 39 584 1224 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 164 A U - - MP 42 41 6 46 4 16 40 583 1223 -15.316 -6.988 -0.012 -13.937 -11.765 -7.994 -11.837 3.519 -13.527 -13.569 -2.650 -5.598 -11.652 1.866 -12.212 -1.154 -1.963 -12.450 -10.701 -10.555 ML 43 41 6 46 4 14 37 582 1221 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 37 582 1221 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 36 580 1220 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 38 583 1222 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 38 582 1222 -4.164 -0.096 -6.864 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 48 47 6 50 3 14 38 581 1221 -16.226 -0.000 -14.880 -6.295 -6.168 -10.767 1.990 D 49 47 6 50 3 12 36 580 1219 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 37 582 1221 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 51 50 3 53 2 13 37 580 1220 -16.881 -0.000 0.640 -4.166 1.227 -4.443 D 52 50 3 53 2 12 36 579 1219 -8.445 -0.004 IL 53 53 3 53 2 13 37 581 1220 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 12 36 579 1219 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 2 80 155 -16.226 -0.000 -14.880 IL 56 56 2 56 3 1 1 81 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 114 - c - - - ML 57 56 2 59 3 1 2 80 155 -2.737 -0.235 -12.240 -1.225 0.850 -4.958 0.797 D 58 56 2 59 3 0 0 69 144 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 2 87 162 -0.352 -2.208 -13.098 0.000 0.000 0.000 0.000 [ MATL 45 ] 141 - A - - - ML 60 59 3 62 3 1 1 29 47 -5.671 -0.192 -3.253 1.022 -10.701 0.864 -2.749 D 61 59 3 62 3 0 0 27 46 -6.752 -2.265 -0.354 IL 62 62 3 62 3 1 2 29 47 -5.346 -0.042 -8.046 0.000 0.000 0.000 0.000 [ MATL 46 ] 143 - A - - - ML 63 62 3 65 3 1 1 28 46 -16.066 -0.000 -14.720 1.730 -5.190 -1.398 -1.854 D 64 62 3 65 3 0 0 27 45 -14.398 -0.006 -8.000 IL 65 65 3 65 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 144 - c - - - ML 66 65 3 68 5 1 1 27 45 -15.159 -0.000 -14.974 -15.187 -16.078 -4.210 0.994 -3.920 0.917 D 67 65 3 68 5 0 0 26 44 -5.312 -0.587 -4.574 -2.949 -2.861 IL 68 68 3 68 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 145 162 C G - - MP 69 68 3 73 6 2 2 26 44 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -10.463 -10.168 -7.276 0.396 -4.834 -11.287 3.673 -7.871 -10.317 0.325 -10.825 -3.929 -1.754 -10.643 -1.925 -9.037 ML 70 68 3 73 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 146 161 C G - - MP 75 74 6 79 6 2 2 24 42 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -6.933 -10.084 -5.997 -0.904 -4.593 -4.108 3.284 -5.348 -10.241 -2.941 -10.755 -1.660 2.191 -6.821 -0.936 -5.003 ML 76 74 6 79 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 147 160 G C - - MP 81 80 6 85 6 2 2 22 40 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -10.062 -5.507 -9.881 0.864 -10.998 -10.477 2.451 -10.567 -6.272 3.004 -5.903 -1.823 -2.495 -6.563 -5.064 -2.906 ML 82 80 6 85 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 148 159 G C - - MP 87 86 6 91 6 2 2 20 38 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -5.222 -2.684 -12.259 2.816 -14.316 -15.146 -9.724 -4.575 -5.390 3.095 -12.512 -3.221 -9.693 -13.423 -11.579 -4.186 ML 88 86 6 91 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 149 158 G C - - MP 93 92 6 97 4 2 2 18 36 -6.804 -15.523 -0.013 -13.937 -14.076 -4.834 -16.669 -8.145 -15.681 -4.938 -9.952 -16.003 -12.020 3.974 -4.459 -2.968 -10.324 -4.623 -12.413 -15.923 ML 94 92 6 97 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 20 39 -5.483 -6.167 -0.057 -8.652 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 151 - U - - - ML 99 98 6 101 3 1 1 14 33 -16.226 -0.000 -14.880 -9.726 -6.038 -6.149 1.989 D 100 98 6 101 3 0 0 19 37 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 152 - U - - - ML 102 101 3 104 3 1 1 13 31 -16.226 -0.000 -14.880 -9.757 -6.373 -5.772 1.989 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 153 - C - - - ML 105 104 3 107 3 1 1 12 30 -16.226 -0.000 -14.880 -6.646 1.984 -6.288 -5.587 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 154 - G - - - ML 108 107 3 110 3 1 1 10 29 -16.226 -0.000 -14.880 0.685 -6.591 1.245 -6.432 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 155 - A - - - ML 111 110 3 113 3 1 1 9 27 -16.226 -0.000 -14.880 1.988 -6.328 -6.640 -6.610 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 156 - A - - - ML 114 113 3 116 3 1 1 7 26 -16.226 -0.001 -11.318 1.393 -2.873 -0.825 -0.572 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 157 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -9.173 -1.204 -5.822 1.826 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 1 16 558 1197 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 173 1 16 558 1197 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 1 27 43 -0.000 -14.221 -13.628 -14.268 [ MATP 15 ] 11 29 G C - - MP 124 123 1 128 6 2 3 27 43 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -13.852 -4.940 -15.570 -2.200 -15.569 -11.876 -2.594 -15.261 -4.948 3.932 -12.225 -1.785 -10.288 -12.320 -12.362 -14.424 ML 125 123 1 128 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 27 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 U A - - MP 130 129 6 134 6 2 3 25 41 -16.093 -6.840 -0.013 -14.809 -15.088 -15.483 -4.949 -13.399 -12.453 -9.626 -5.990 -12.602 0.367 -11.721 -12.554 -1.061 -12.678 -11.779 3.819 -6.595 -6.147 -4.717 ML 131 129 6 134 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 24 41 -5.330 -0.057 -8.841 -7.009 -8.115 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 26 G C - - MP 136 135 6 140 6 2 3 23 39 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -10.066 -3.517 -9.885 -1.517 -10.985 -10.481 1.370 -10.565 -5.581 3.608 -6.857 -3.207 -0.961 -6.438 -3.149 -8.848 ML 137 135 6 140 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 25 U G - - MP 142 141 6 146 4 2 3 21 37 -15.316 -15.523 -0.000 -13.937 0.568 -13.427 -12.463 -9.664 -6.929 -4.180 -1.427 -11.729 -4.259 -9.636 -5.121 -11.832 -1.460 -4.903 3.234 2.069 ML 143 141 6 146 4 1 1 25 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 148 147 6 150 3 1 2 19 34 -16.226 -0.000 -14.880 1.971 -12.025 -3.650 -11.447 D 149 147 6 150 3 0 0 20 38 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 151 150 3 153 3 1 2 18 33 -16.226 -0.000 -14.880 0.852 -6.503 1.108 -5.175 D 152 150 3 153 3 0 0 19 37 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 154 153 3 156 3 1 2 17 32 -3.776 -0.109 -14.880 -1.119 -0.969 -5.118 1.585 D 155 153 3 156 3 0 0 16 35 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 18 33 -1.892 -0.454 -10.312 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - G - - - ML 157 156 3 159 3 1 2 12 30 -16.226 -0.000 -14.880 -5.250 -12.529 1.990 -11.502 D 158 156 3 159 3 0 0 16 35 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 160 159 3 162 3 1 2 10 29 -16.226 -0.000 -14.880 -6.079 -5.955 1.943 -3.007 D 161 159 3 162 3 0 0 15 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - U - - - ML 163 162 3 165 3 1 1 9 28 -16.226 -0.153 -3.314 -3.983 -1.971 -4.414 1.862 D 164 162 3 165 3 0 0 14 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - - - ML 166 165 3 168 3 1 1 7 26 -16.073 -0.000 -14.727 -2.408 -1.191 -2.128 1.653 D 167 165 3 168 3 0 0 8 26 -14.335 -0.003 -8.727 IL 168 168 3 168 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.908 -10.536 -2.959 -3.085 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 173 122 1 174 3 0 0 542 1181 -5.128 -0.042 -14.880 IL 174 174 2 174 3 1 1 546 1185 -0.424 -1.977 -10.508 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - U - - - ML 175 174 2 177 5 1 1 542 1181 -15.159 -0.000 -14.975 -15.187 -16.078 -0.515 -1.270 -0.958 1.246 D 176 174 2 177 5 0 0 538 1177 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 541 1180 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 35 113 C G - - MP 178 177 3 182 6 2 2 541 1180 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -10.390 -10.092 -2.239 -3.008 -3.822 -6.804 3.093 -6.754 -10.249 1.361 -6.470 -0.238 1.047 -10.573 0.624 -8.968 ML 179 177 3 182 6 1 1 538 1177 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 537 1176 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 531 1170 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 539 1178 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 539 1178 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 112 u a - - MP 184 183 6 188 6 2 2 539 1178 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -7.396 -6.445 -7.706 1.393 -4.697 -11.193 1.792 -9.889 -7.952 0.579 -10.729 -7.647 2.993 -5.704 -1.713 -4.038 ML 185 183 6 188 6 1 1 536 1175 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 535 1174 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 530 1169 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 537 1176 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 537 1176 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 111 G C - - MP 190 189 6 194 6 2 2 537 1176 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -10.061 -3.109 -9.880 0.986 -11.010 -8.225 -0.189 -10.570 -6.872 3.645 -7.950 -4.909 -1.686 -2.856 -8.084 -6.434 ML 191 189 6 194 6 1 1 534 1173 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 533 1172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 528 1167 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 535 1174 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 535 1174 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 110 G C - - MP 196 195 6 200 6 2 2 535 1174 -16.093 -16.032 -0.000 -14.809 -15.088 -15.483 -13.110 -4.267 -13.651 -7.617 -14.073 -6.631 -0.903 -14.018 -11.840 3.877 -5.229 -3.174 -1.246 -6.188 -2.914 -12.643 ML 197 195 6 200 6 1 1 532 1171 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 530 1170 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 527 1166 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 533 1173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 533 1172 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 109 A U - - MP 202 201 6 206 4 2 2 533 1172 -15.316 -15.523 -0.000 -13.937 -5.715 -9.880 -2.521 3.518 -12.538 -12.243 -2.629 -4.814 -11.270 1.185 -11.701 -4.901 0.207 -11.373 -9.662 -0.537 ML 203 201 6 206 4 1 1 531 1170 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 528 1167 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 526 1165 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 532 1171 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 532 1171 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - - - ML 208 207 6 210 3 1 1 531 1170 -16.226 -0.000 -14.880 -5.572 1.115 -10.200 0.857 D 209 207 6 210 3 0 0 523 1162 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 530 1170 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - - - ML 211 210 3 213 3 1 1 530 1169 -16.226 -0.000 -14.880 -6.541 -6.317 -6.637 1.988 D 212 210 3 213 3 0 0 520 1159 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 529 1168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - u - - - ML 214 213 3 216 3 1 1 529 1168 -16.226 -0.000 -14.880 0.003 -0.003 -0.003 0.003 D 215 213 3 216 3 0 0 515 1154 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 528 1167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - u - - - ML 217 216 3 219 3 1 1 528 1167 -16.226 -0.000 -14.880 0.003 -0.003 -0.003 0.003 D 218 216 3 219 3 0 0 506 1145 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 526 1165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - u - - - ML 220 219 3 222 3 1 1 527 1166 -16.226 -0.000 -14.880 0.003 -0.003 -0.003 0.003 D 221 219 3 222 3 0 0 489 1128 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 524 1163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - - - ML 223 222 3 225 3 1 1 526 1165 -1.501 -0.629 -14.880 1.864 -11.390 -1.480 -11.174 D 224 222 3 225 3 0 0 412 1051 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 561 1200 -0.042 -5.138 -17.258 0.000 0.000 0.000 0.000 [ MATL 41 ] 108 - A - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 1.078 -2.662 -6.325 0.781 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Gln ACC euk-Gln-r2-031616 LENG 72 MAXL 589 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 07:57:20 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Gln-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Gln-r2-031616.sto NSEQ 1162 EFFN 17.690819 CKSUM 165419657 STATS LOCAL MSV -8.1437 0.71880 STATS LOCAL VITERBI -9.0893 0.71880 STATS LOCAL FORWARD -3.6982 0.71880 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49559 1.44924 1.30526 1.30920 1.38629 1.38629 1.38629 1.38629 0.01305 5.03885 5.03885 1.46634 0.26236 0.00000 * 1 2.77881 3.46851 0.18979 2.53089 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01305 5.03885 5.03885 1.46634 0.26236 1.09861 0.40547 2 2.43102 2.19601 0.30892 2.70959 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01305 5.03885 5.03885 1.46634 0.26236 1.09861 0.40547 3 2.88931 1.53518 2.21745 0.47791 3 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01305 5.03885 5.03885 1.46634 0.26236 1.09861 0.40547 4 2.51581 1.32490 1.96741 0.66640 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01305 5.03885 5.03885 1.46634 0.26236 1.09861 0.40547 5 2.65114 0.62970 1.42584 1.85550 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01964 4.34530 5.03900 0.81055 0.58809 1.09861 0.40547 6 2.83852 0.70321 2.29490 1.06211 7 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 7 0.49685 3.44404 1.14157 3.21124 8 A - - ( 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 8 4.11696 3.97079 4.79181 0.04442 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 9 0.99670 3.45213 0.57665 3.28475 10 G - - , 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 10 3.44457 4.19169 0.05716 4.76611 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 11 3.66882 1.96822 2.89932 0.24881 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 12 2.31189 1.94912 0.38039 2.59114 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 13 2.12989 2.28425 2.85132 0.32638 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 14 0.03479 5.15100 3.83217 4.99978 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 15 0.80498 4.08032 0.67020 3.71343 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 16 2.10831 2.02087 3.53702 0.33280 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07864 2.67155 5.03900 0.43141 1.04866 1.09861 0.40547 17 4.36542 5.93797 0.02038 5.33449 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 18 3.90381 4.53663 0.06624 3.40471 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 19 3.32754 2.61691 3.75826 0.14183 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10455 5.03900 2.37746 1.46634 0.26236 1.09861 0.40547 20 2.58667 2.14483 2.73430 0.29746 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01429 4.94874 4.94874 1.46634 0.26236 0.13075 2.09914 21 0.09807 4.14330 3.19865 3.30417 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 22 1.86472 2.99745 0.60944 1.38034 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 23 2.82766 0.41692 1.85650 2.07498 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.02069 4.26868 5.03900 0.75897 0.63140 1.09861 0.40547 24 0.26847 2.98199 1.88321 3.42163 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 25 4.69759 0.08030 4.09765 2.96754 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.03824 3.47260 5.03900 1.39762 0.28393 1.09861 0.40547 26 1.56507 2.03474 1.95051 0.65776 34 U - - , 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 27 2.58764 0.78870 1.56375 1.34316 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 28 1.82343 1.34945 2.01921 0.80657 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 29 1.81337 2.59195 0.36220 2.71989 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 30 2.49940 2.80341 0.23650 2.69010 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 31 0.64394 2.68455 1.32313 1.96448 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 32 3.30095 0.66435 4.11913 0.83867 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 33 3.82630 3.70896 4.27406 0.06211 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 34 1.31699 1.46198 1.47253 1.30586 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 35 1.31699 1.46198 1.47253 1.30586 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 36 1.31699 1.46198 1.47253 1.30586 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 37 0.11829 4.62780 2.39625 4.53463 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.38021 1.17183 5.03900 3.55219 0.02908 1.09861 0.40547 38 0.72391 2.56584 3.09273 0.93416 108 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 39 2.30806 1.40895 2.44854 0.56260 109 U - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 40 2.97141 0.26815 2.59465 2.21359 110 C - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 41 3.02034 0.38432 2.47890 1.67950 111 C - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 42 0.89350 2.10841 1.23382 1.72501 112 a - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 43 1.71652 1.80798 0.61460 2.15876 113 G - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 44 2.04532 0.84831 3.38015 0.89531 114 c - - , 1.38629 1.38629 1.38629 1.38629 0.15302 2.00058 5.01625 1.53220 0.24342 1.09861 0.40547 45 0.71145 3.91344 0.83476 2.89826 141 a - - , 1.38629 1.38629 1.38629 1.38629 0.12767 3.75829 2.33784 0.48567 0.95525 1.10625 0.40167 46 0.24607 3.39893 2.29911 2.47244 143 A - - , 1.38629 1.38629 1.38629 1.38629 0.01435 4.94448 4.94448 1.46634 0.26236 0.12735 2.12378 47 2.97825 0.75379 3.42075 0.80777 144 c - - , 1.38629 1.38629 1.38629 1.38629 0.01305 5.03885 5.03885 1.46634 0.26236 1.08351 0.41310 48 2.28025 0.43324 2.13284 2.03382 145 C - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 49 2.57191 0.66514 2.42437 1.13670 146 C - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 50 1.89429 1.34630 0.65753 2.64166 147 G - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 51 1.00716 3.22091 0.60171 3.05863 148 G - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 52 4.01514 4.87955 0.03438 4.80938 149 G - - < 1.38629 1.38629 1.38629 1.38629 0.02084 4.25853 5.03900 0.75237 0.63723 1.09861 0.40547 53 3.99364 3.75006 4.28456 0.05734 151 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 54 3.97185 3.75925 4.21097 0.05866 152 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 55 4.52294 0.03764 4.68638 4.08271 153 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 56 0.91175 4.13878 0.57618 3.90228 154 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 57 0.02497 4.90555 4.69346 4.81551 155 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 58 0.53283 2.61936 1.91306 1.64724 156 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01336 5.03900 4.99257 1.46634 0.26236 1.09861 0.40547 59 3.74559 2.24241 4.05736 0.15914 157 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01305 5.03869 5.03869 1.46634 0.26236 1.06790 0.42118 60 5.13752 0.04397 4.72124 3.56707 158 C - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 61 3.31943 0.64170 3.06929 0.93911 159 C - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 62 2.95676 0.72229 1.30043 1.66095 160 c - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 63 1.28381 2.70510 0.59559 2.25455 161 G - - > 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 64 2.30609 2.25100 0.39072 2.13294 162 G - - > 1.38629 1.38629 1.38629 1.38629 0.01990 4.32548 5.03900 0.79690 0.59916 1.09861 0.40547 65 3.37615 1.27240 3.32164 0.43145 164 U - - ) 1.38629 1.38629 1.38629 1.38629 0.01305 5.03900 5.03900 1.46634 0.26236 1.09861 0.40547 66 1.16997 2.45258 0.65083 2.50177 165 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01976 4.34536 5.02049 0.81059 0.58806 1.09861 0.40547 67 2.10654 1.62061 0.57859 2.12130 167 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01305 5.03873 5.03873 1.46634 0.26236 1.08631 0.41167 68 1.37535 2.16834 0.64446 2.22622 168 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01305 5.03885 5.03885 1.46634 0.26236 1.09861 0.40547 69 0.50839 2.33126 1.45773 2.67953 169 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01356 5.03885 4.96417 1.46634 0.26236 1.09861 0.40547 70 3.16156 0.34521 2.01968 2.14665 170 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01305 5.03835 5.03835 1.46634 0.26236 1.04945 0.43098 71 2.62966 0.21327 3.30086 2.48766 171 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03511 3.57490 5.03885 1.16438 0.37414 1.09861 0.40547 72 1.51447 2.72123 2.08091 0.52854 175 U - - : 1.38629 1.38629 1.38629 1.38629 0.00654 5.03235 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Glu ACC euk-Glu-r2-031616 STATES 230 NODES 61 CLEN 72 W 661 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 08:21:48 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Glu-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Glu-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Glu-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Glu-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Glu-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Glu-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Glu-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1323 EFFN 1323.000000 CKSUM 1904062609 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.1595 0.71893 ECMLC 0.73375 -6.90791 1.73470 1600000 681191 0.001762 ECMGC 0.36744 -44.13228 -32.91609 1600000 24656 0.016223 ECMLI 0.65264 -7.69481 1.93898 1600000 645275 0.001860 ECMGI 0.38766 -41.39727 -30.74403 1600000 24866 0.016086 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 661 1386 -15.297 -16.543 -0.011 -7.004 IL 1 1 2 1 4 26 50 664 1389 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 27 52 664 1389 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 180 - A - - MR 3 2 3 5 5 30 53 663 1388 -5.319 -0.037 -15.150 -15.363 -16.254 1.740 -5.223 -0.716 -5.413 D 4 2 3 5 5 23 46 662 1386 -9.018 -0.104 -4.341 -8.075 -6.069 IR 5 5 3 5 5 28 52 665 1390 -0.601 -1.560 -11.936 -10.104 -11.210 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 176 U A - - MP 6 5 3 10 6 29 52 662 1387 -16.279 -16.218 -0.000 -14.994 -15.274 -15.669 -4.692 -12.979 -12.633 -3.534 -4.576 -12.933 -5.165 -11.970 -2.252 -4.217 -12.858 -1.742 3.919 -5.692 -3.415 -11.499 ML 7 5 3 10 6 23 45 659 1384 -6.950 -7.296 -2.011 -0.533 -7.146 -4.676 -0.154 -1.080 0.941 -0.499 MR 8 5 3 10 6 22 44 659 1384 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 19 41 654 1379 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 23 45 661 1386 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 23 46 661 1386 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 175 C G - - MP 12 11 6 16 6 27 50 660 1385 -16.279 -16.218 -0.024 -14.994 -5.998 -9.853 -13.332 -13.614 -4.457 -9.851 -3.323 -4.997 3.925 -4.864 -12.753 -9.822 -4.982 -12.018 -1.892 -13.166 -1.740 -11.555 ML 13 11 6 16 6 22 45 657 1382 -6.950 -7.296 -2.011 -0.533 -7.146 -4.676 -0.285 -0.556 -0.916 0.978 MR 14 11 6 16 6 22 44 658 1383 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 19 41 653 1378 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 23 45 659 1384 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 45 659 1384 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 174 C G - - MP 18 17 6 22 6 26 48 658 1383 -16.254 -16.193 -0.011 -14.970 -7.009 -15.645 -13.308 -13.589 -3.756 -9.826 -4.321 -8.664 3.917 -4.631 -12.729 -0.672 -4.469 -11.994 -7.708 -13.142 -4.349 -11.530 ML 19 17 6 22 6 22 45 656 1381 -6.950 -7.296 -0.660 -1.705 -7.146 -4.676 -0.154 -1.080 0.941 -0.499 MR 20 17 6 22 6 23 46 657 1382 -11.743 -10.472 -4.367 -10.451 -0.078 -8.664 -2.755 -6.212 1.932 -5.480 D 21 17 6 22 6 18 41 652 1376 -10.894 -9.592 -5.389 -6.071 -6.088 -0.082 IL 22 22 5 22 6 23 45 657 1382 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 23 45 657 1382 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 173 g c - - MP 24 23 6 28 6 24 46 656 1381 -16.244 -16.184 -0.002 -9.635 -15.240 -15.635 -10.304 -9.107 -6.384 -1.262 -3.137 -5.163 2.871 -5.719 -10.468 2.883 -4.590 -1.750 -3.988 -10.068 -1.705 -9.042 ML 25 23 6 28 6 21 44 654 1379 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 22 45 656 1381 -0.628 -10.991 -6.900 -10.969 -1.548 -9.183 1.402 -5.643 0.395 -5.524 D 27 23 6 28 6 18 40 651 1376 -10.894 -9.592 -5.389 -6.071 -6.088 -0.082 IL 28 28 5 28 6 23 46 656 1381 -1.022 -8.286 -0.994 -9.941 -10.718 -10.378 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 22 45 655 1380 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 172 a u - - MP 30 29 6 34 6 22 44 654 1379 -16.265 -7.079 -0.011 -14.980 -15.260 -15.655 -6.789 -3.677 -6.535 2.873 -6.325 -8.917 -1.333 -6.542 -6.459 -0.232 -8.692 -1.051 2.594 -6.089 -1.920 -1.023 ML 31 29 6 34 6 20 43 653 1377 -7.970 -8.316 -0.288 -2.725 -8.166 -5.695 -1.294 -2.466 1.648 -1.851 MR 32 29 6 34 6 20 43 653 1378 -10.760 -9.489 -5.398 -9.467 -0.047 -7.681 -4.351 -3.965 -5.156 1.948 D 33 29 6 34 6 18 40 651 1376 -10.894 -9.592 -0.424 -6.071 -6.088 -2.164 IL 34 34 5 34 6 20 43 653 1378 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 21 43 653 1378 -5.272 -0.059 -8.783 -6.950 -8.056 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 170 u a - - MP 36 35 6 40 6 20 42 652 1377 -16.268 -16.207 -0.008 -14.984 -15.264 -7.605 -10.484 -9.843 -10.438 -0.251 -1.917 -6.385 -1.260 -10.199 -10.434 2.157 -8.046 -1.009 2.730 -10.523 1.474 -3.532 ML 37 35 6 40 6 18 40 650 1375 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 19 42 652 1377 -0.109 -9.489 -5.398 -9.467 -4.601 -7.681 1.966 -5.318 -4.755 -5.012 D 39 35 6 40 6 16 39 649 1374 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 19 41 651 1376 -6.135 -6.398 -0.051 -8.053 -8.830 -8.490 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 41 651 1376 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 10 169 g c - - MP 42 41 6 46 4 18 40 650 1375 -15.496 -7.280 -0.009 -14.117 -10.314 -7.676 -6.339 2.432 -11.277 -10.748 -2.919 -10.817 -10.561 2.559 -10.815 1.887 -0.237 -10.003 -8.352 -7.077 ML 43 41 6 46 4 16 39 649 1374 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 16 38 648 1373 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 16 39 649 1374 -8.222 -0.113 -5.919 -4.174 IL 46 46 5 46 4 17 40 650 1374 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 39 649 1374 -4.808 -0.061 -7.508 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - U - - - ML 48 47 6 50 3 16 38 648 1373 -16.413 -0.000 -15.067 -6.711 -3.712 -5.406 1.960 D 49 47 6 50 3 14 37 646 1371 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 39 648 1373 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - G - - - ML 51 50 3 53 2 15 37 647 1372 -6.902 -0.012 0.084 -2.549 1.430 -3.742 D 52 50 3 53 2 14 36 646 1371 -8.445 -0.004 IL 53 53 3 53 2 15 37 647 1372 -5.503 -0.032 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 14 36 646 1371 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 3 65 128 -16.413 -0.000 -15.067 IL 56 56 2 56 3 1 4 66 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 125 - A - - - ML 57 56 2 59 3 1 3 65 128 -16.413 -0.683 -1.407 1.120 0.119 -1.892 -1.087 D 58 56 2 59 3 0 1 62 125 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 4 67 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 126 - G - - - ML 60 59 3 62 3 1 3 65 128 -4.447 -0.068 -11.493 -10.240 -2.371 1.920 -5.537 D 61 59 3 62 3 0 1 36 99 -16.426 -0.002 -9.795 IL 62 62 3 62 3 1 2 75 138 -0.423 -1.980 -10.691 0.000 0.000 0.000 0.000 [ MATL 46 ] 145 - G - - - ML 63 62 3 65 3 1 5 27 45 -1.065 -0.938 -15.066 -2.315 -6.643 1.918 -6.556 D 64 62 3 65 3 0 0 25 42 -7.376 -2.889 -0.219 IL 65 65 3 65 3 1 4 26 44 -10.044 -0.002 -12.744 0.000 0.000 0.000 0.000 [ MATL 47 ] 147 - C - - - ML 66 65 3 68 5 1 4 25 43 -15.346 -0.000 -15.161 -15.373 -16.265 -6.470 1.851 -4.780 -1.539 D 67 65 3 68 5 0 0 25 42 -5.752 -0.924 -5.013 -1.636 -3.301 IL 68 68 3 68 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 148 167 C G - - MP 69 68 3 73 6 2 5 24 42 -16.279 -16.218 -0.000 -14.994 -15.274 -15.669 -6.246 -13.537 -3.661 -2.216 -2.539 -6.153 3.905 -5.298 -12.719 -1.855 -6.815 -11.878 -6.254 -13.130 -2.309 -11.519 ML 70 68 3 73 6 1 1 25 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 24 41 -7.429 -6.158 -2.066 -6.136 -0.560 -4.350 0.009 -0.883 0.727 -0.328 D 72 68 3 73 6 0 0 23 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 149 166 C G - - MP 75 74 6 79 6 2 4 22 40 -16.279 -16.218 -0.000 -14.994 -15.274 -15.669 -7.405 -10.264 -3.918 -0.979 -3.592 -11.411 3.342 -5.485 -7.858 2.074 -5.106 -4.667 -1.768 -10.749 -0.797 -5.493 ML 76 74 6 79 6 1 1 23 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 22 39 -7.429 -6.158 -0.994 -6.136 -1.270 -4.350 0.009 -0.883 0.727 -0.328 D 78 74 6 79 6 0 0 21 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 24 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 150 165 G C - - MP 81 80 6 85 6 2 3 20 38 -6.805 -16.218 -0.013 -14.995 -15.275 -15.670 -10.255 -3.798 -10.074 0.928 -6.084 -5.635 -6.271 -5.427 -3.536 3.719 -4.870 -0.880 -6.537 -6.318 -8.279 -3.421 ML 82 80 6 85 6 1 1 20 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 21 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 19 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 20 37 -6.349 -6.612 -0.044 -8.267 -9.043 -8.703 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 21 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 152 164 G C - - MP 87 86 6 91 6 2 3 18 36 -16.279 -16.218 -0.013 -6.852 -15.275 -15.670 -14.247 -3.226 -16.753 -2.451 -4.753 -5.094 -10.132 -16.138 -5.906 3.948 -4.772 -3.757 -10.502 -3.597 -12.589 -15.967 ML 88 86 6 91 6 1 1 19 36 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 20 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 19 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 20 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 20 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 153 163 G C - - MP 93 92 6 97 4 2 2 16 34 -15.491 -15.698 -0.000 -12.062 -14.247 -4.573 -16.826 -3.417 -15.854 -4.828 -10.126 -16.167 -4.581 3.961 -4.423 -3.427 -10.497 -3.742 -12.586 -16.071 ML 94 92 6 97 4 1 1 18 36 -7.493 -0.138 -3.759 -6.405 -3.097 -2.954 -2.938 1.857 MR 95 92 6 97 4 1 1 20 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 19 35 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 21 37 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 16 35 -4.418 -3.774 -0.184 0.000 0.000 0.000 0.000 [ MATL 53 ] 154 - U - - - ML 99 98 6 101 3 1 1 14 32 -16.400 -0.000 -15.054 -6.432 -6.356 -6.485 1.987 D 100 98 6 101 3 0 0 15 34 -11.028 -0.035 -5.419 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 155 - U - - - ML 102 101 3 104 3 1 1 13 31 -16.413 -0.000 -15.067 -6.456 -6.534 -5.102 1.981 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 156 - C - - - ML 105 104 3 107 3 1 1 11 30 -16.413 -0.000 -15.067 -5.935 1.969 -10.873 -3.858 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 157 - G - - - ML 108 107 3 110 3 1 1 10 28 -16.413 -0.000 -15.067 0.600 -6.269 1.297 -6.130 D 109 107 3 110 3 0 0 16 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 158 - A - - - ML 111 110 3 113 3 1 1 8 27 -16.413 -0.000 -15.067 1.965 -6.201 -6.264 -3.830 D 112 110 3 113 3 0 0 14 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 159 - U - - - ML 114 113 3 116 3 1 1 6 13 -7.090 -0.011 -15.067 -2.620 -0.849 -1.839 1.586 D 115 113 3 116 3 0 0 6 12 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 7 13 -4.237 -0.091 -6.937 0.000 0.000 0.000 0.000 [ MATL 59 ] 161 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -5.850 -0.833 -5.997 1.768 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 0 16 625 1350 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 173 0 16 625 1350 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 1 80 170 -0.000 -14.407 -13.814 -14.454 [ MATP 15 ] 14 39 G U - - MP 124 123 1 128 6 2 3 80 170 -16.279 -7.070 -0.011 -14.995 -15.275 -15.670 -12.322 -7.373 -12.517 -0.507 -14.657 -15.806 -10.114 -3.879 -4.541 1.573 -3.879 3.589 -10.039 -6.033 -11.945 -3.611 ML 125 123 1 128 6 1 1 78 168 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 78 168 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 73 164 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 79 170 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 79 169 -5.292 -0.058 -8.803 -6.971 -8.077 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 37 U A - - MP 130 129 6 134 6 2 3 78 168 -16.279 -16.218 -0.001 -14.995 -11.565 -15.670 -4.755 -13.582 -12.649 -9.821 -3.418 -12.799 -6.718 -11.918 -3.335 -5.247 -12.873 -11.943 3.964 -5.139 -4.445 -4.233 ML 131 129 6 134 6 1 1 76 166 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 76 166 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 72 162 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 77 168 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 77 167 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 36 C G - - MP 136 135 6 140 6 2 3 76 166 -16.279 -16.218 -0.000 -14.994 -15.274 -15.669 -4.428 -13.613 -5.938 -9.850 -4.475 -4.690 3.602 -4.913 -12.753 1.840 -12.873 -12.017 -7.732 -13.166 -3.380 -11.555 ML 137 135 6 140 6 1 1 74 165 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 74 164 -7.580 -6.309 -0.858 -6.287 -1.421 -4.501 -0.124 -1.042 0.905 -0.466 D 139 135 6 140 6 0 0 70 160 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 75 166 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 75 165 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 35 U G - - MP 142 141 6 146 4 2 3 74 164 -15.503 -15.710 -0.000 -14.124 -4.825 -13.614 -5.045 -9.850 -1.302 -4.651 0.697 -11.915 -12.753 -9.822 -12.873 -12.017 1.342 -6.037 3.267 0.757 ML 143 141 6 146 4 1 1 73 163 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 71 161 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 69 159 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 1 74 164 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 73 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - - - ML 148 147 6 150 3 1 2 72 162 -4.609 -0.060 -15.067 1.987 -12.097 -5.340 -6.490 D 149 147 6 150 3 0 0 66 156 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 87 177 -0.294 -2.442 -11.663 0.000 0.000 0.000 0.000 [ MATL 20 ] 25 - G - - - ML 151 150 3 153 3 1 2 15 32 -16.413 -0.000 -15.067 -1.521 -6.105 1.859 -6.607 D 152 150 3 153 3 0 0 19 37 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 26 - U - - - ML 154 153 3 156 3 1 2 14 31 -3.568 -0.127 -15.067 -3.594 -0.390 -2.009 1.539 D 155 153 3 156 3 0 0 16 35 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 15 31 -2.582 -0.265 -10.515 0.000 0.000 0.000 0.000 [ MATL 22 ] 29 - G - - - ML 157 156 3 159 3 1 2 11 30 -16.413 -0.000 -15.067 -4.539 -12.714 1.984 -11.687 D 158 156 3 159 3 0 0 17 35 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 30 - G - - - ML 160 159 3 162 3 1 1 10 28 -16.413 -0.000 -15.067 -6.028 -6.419 1.984 -5.814 D 161 159 3 162 3 0 0 15 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 31 - U - - - ML 163 162 3 165 3 1 1 8 27 -6.124 -0.076 -4.757 -5.274 0.593 -5.791 1.292 D 164 162 3 165 3 0 0 8 27 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 8 27 -5.100 -0.049 -7.800 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - U - - - ML 166 165 3 168 3 1 1 7 26 -16.358 -0.000 -15.012 -5.606 -2.410 -6.205 1.918 D 167 165 3 168 3 0 0 8 27 -13.086 -0.008 -7.477 IL 168 168 3 168 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.986 -6.863 -5.724 -6.451 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 173 122 1 174 3 0 0 608 1333 -16.413 -0.000 -15.067 IL 174 174 2 174 3 1 1 610 1334 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 40 - U - - - ML 175 174 2 177 5 1 1 608 1333 -15.346 -0.000 -15.162 -15.374 -16.265 -0.012 -2.907 -2.596 1.438 D 176 174 2 177 5 0 0 605 1330 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 608 1333 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 41 124 c g - - MP 178 177 3 182 6 2 2 607 1332 -16.279 -6.780 -0.013 -14.995 -15.275 -15.670 -6.522 -10.270 -0.744 -0.415 -2.943 -6.256 2.678 -10.091 -10.426 0.081 -10.940 -7.842 2.091 -6.208 1.461 -7.204 ML 179 177 3 182 6 1 1 604 1329 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 604 1329 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 598 1323 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 606 1331 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 606 1331 -5.546 -0.049 -9.057 -7.225 -8.331 0.000 0.000 0.000 0.000 [ MATP 31 ] 42 122 g c - - MP 184 183 6 188 6 2 2 605 1330 -16.279 -16.218 -0.000 -14.995 -15.275 -15.670 -7.506 -3.992 -5.955 0.239 -2.740 -4.691 2.288 -5.969 -4.481 2.567 -8.342 -0.504 1.145 -3.472 -0.973 -2.664 ML 185 183 6 188 6 1 1 602 1327 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 602 1327 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 596 1321 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 604 1329 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 604 1329 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 43 121 u a - - MP 190 189 6 194 6 2 2 603 1328 -16.279 -16.218 -0.011 -14.995 -7.010 -15.670 -9.657 -3.534 -9.736 -0.577 -6.288 -5.621 0.910 -1.137 -5.909 2.516 -7.323 -4.137 2.793 -4.213 -4.100 -4.972 ML 191 189 6 194 6 1 1 601 1326 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 601 1325 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 595 1320 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 602 1327 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 602 1327 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 44 120 C G - - MP 196 195 6 200 6 2 2 601 1326 -16.268 -16.207 -0.000 -14.984 -15.263 -15.658 -3.965 -5.413 -10.523 -6.055 -3.091 -4.422 3.127 -5.936 -5.359 2.589 -7.175 -3.177 -2.567 -3.740 -1.553 -2.085 ML 197 195 6 200 6 1 1 599 1324 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 599 1324 -10.782 -9.511 -5.420 -9.489 -0.046 -7.703 -4.317 -5.861 1.964 -5.050 D 199 195 6 200 6 0 0 593 1318 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 600 1325 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 600 1325 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 45 119 G C - - MP 202 201 6 206 4 2 2 599 1324 -15.492 -15.699 -0.000 -14.113 -6.387 -4.763 -7.261 1.397 -5.572 -6.032 -0.638 -10.744 -7.541 3.555 -4.334 -1.256 -2.204 -4.158 -3.226 -5.513 ML 203 201 6 206 4 1 1 597 1322 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 598 1323 -8.795 -7.823 -0.065 -4.752 1.967 -5.347 -4.783 -5.039 D 205 201 6 206 4 0 0 592 1317 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 599 1324 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 598 1323 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 46 - C - - - ML 208 207 6 210 3 1 1 597 1322 -16.413 -0.000 -15.067 -6.650 1.750 -6.656 -0.698 D 209 207 6 210 3 0 0 589 1314 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 597 1322 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 47 - U - - - ML 211 210 3 213 3 1 1 596 1321 -16.413 -0.000 -15.067 -6.019 -5.684 -10.751 1.987 D 212 210 3 213 3 0 0 585 1310 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 596 1321 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 48 - c - - - ML 214 213 3 216 3 1 1 595 1320 -16.413 -0.000 -15.067 -0.009 0.031 -0.014 -0.009 D 215 213 3 216 3 0 0 580 1305 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 594 1319 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - u - - - ML 217 216 3 219 3 1 1 594 1319 -16.413 -0.000 -15.067 0.002 -0.002 -0.003 0.003 D 218 216 3 219 3 0 0 570 1295 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 593 1317 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - u - - - ML 220 219 3 222 3 1 1 593 1318 -16.413 -0.000 -15.067 0.002 -0.002 -0.003 0.003 D 221 219 3 222 3 0 0 551 1276 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 590 1315 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 51 - A - - - ML 223 222 3 225 3 1 1 592 1317 -1.631 -0.563 -15.067 1.956 -4.283 -4.276 -5.825 D 224 222 3 225 3 0 0 467 1192 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 636 1361 -0.037 -5.317 -17.495 0.000 0.000 0.000 0.000 [ MATL 41 ] 118 - C - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 -2.254 1.862 -4.834 -3.067 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Glu ACC euk-Glu-r2-031616 LENG 72 MAXL 645 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 08:21:49 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Glu-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Glu-r2-031616.sto NSEQ 1323 EFFN 7.254839 CKSUM 1904062609 STATS LOCAL MSV -8.1662 0.71893 STATS LOCAL VITERBI -9.2519 0.71893 STATS LOCAL FORWARD -3.3088 0.71893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55357 1.39312 1.25951 1.36095 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 0.00000 * 1 4.47753 3.92202 4.24146 0.04662 1 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 2 4.54228 0.05328 4.40774 3.53857 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03393 4.58836 3.76395 1.46634 0.26236 1.09861 0.40547 3 3.98513 0.09426 3.52091 3.17512 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02698 4.57526 4.11543 1.46634 0.26236 0.66606 0.72099 4 2.12550 1.08582 0.98322 1.77846 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03282 3.81441 4.58157 0.76103 0.62958 1.29891 0.31859 5 1.23946 1.72385 1.62686 1.09202 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02069 4.58157 4.58157 1.46634 0.26236 0.78891 0.60576 6 1.99038 1.62713 1.35138 0.89654 8 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02460 4.58836 4.25924 1.46634 0.26236 1.09861 0.40547 7 1.31798 2.66107 0.57470 2.30682 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02063 4.58439 4.58439 1.46634 0.26236 0.89163 0.52761 8 3.11223 2.85633 3.52908 0.14077 11 U - - , 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 9 1.36928 2.59367 0.53829 2.43931 12 G - - , 1.38629 1.38629 1.38629 1.38629 0.02720 4.09465 4.58836 0.96127 0.48193 1.09861 0.40547 10 2.02527 2.85854 0.28857 2.79110 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 11 5.75265 5.41835 5.80600 0.01068 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.02079 4.58836 4.56523 1.46634 0.26236 1.09861 0.40547 12 2.48992 0.63351 1.52965 1.77346 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58813 4.58813 1.46634 0.26236 1.08325 0.41323 13 2.11183 1.48576 2.03186 0.65093 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 14 0.05101 4.36169 3.85723 4.14476 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05360 3.16967 4.58836 1.66986 0.20859 1.09861 0.40547 15 2.31449 3.74497 0.16787 3.43949 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 16 2.31306 1.67918 2.48532 0.46011 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08981 2.58061 4.58836 0.38119 1.14900 1.09861 0.40547 17 3.62908 4.85532 0.04791 4.38579 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 18 3.64988 4.51833 0.05523 4.08476 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 19 2.53159 1.11942 3.10948 0.59897 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06209 3.84870 3.24683 0.77922 0.61390 1.09861 0.40547 20 2.98981 2.56896 3.48967 0.17129 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02116 4.55922 4.55922 1.46634 0.26236 0.42061 1.06900 21 0.05446 4.22880 3.84698 4.06954 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 22 1.48799 2.19123 0.73528 1.69814 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 23 1.99895 1.60896 0.57876 2.26494 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 24 0.01438 5.87412 5.02993 5.31254 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.02649 4.13713 4.58836 0.99659 0.46066 1.09861 0.40547 25 3.02737 1.26829 2.67906 0.50814 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 26 1.41357 2.26358 2.37473 0.58034 40 U - - , 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 27 1.91240 1.09279 1.84708 1.02360 41 u - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 28 1.82833 1.29639 1.15902 1.37830 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 29 1.95769 1.51574 1.20781 1.07787 43 u - - < 1.38629 1.38629 1.38629 1.38629 0.02673 4.58836 4.12249 1.46634 0.26236 1.09861 0.40547 30 2.12022 0.98077 1.19217 1.60240 44 c - - < 1.38629 1.38629 1.38629 1.38629 0.02067 4.58231 4.58231 1.46634 0.26236 1.27910 0.32613 31 1.63439 2.46022 0.46254 2.40986 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.02067 4.58231 4.58231 1.46634 0.26236 0.81323 0.58595 32 2.99930 0.28205 3.62273 1.77650 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 33 3.43962 3.29144 4.03517 0.09098 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 34 1.28705 1.49012 1.52636 1.26853 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 35 1.28325 1.50351 1.52130 1.26554 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 36 1.28325 1.50351 1.52130 1.26554 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 37 0.10031 3.51625 3.32589 3.51350 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.31651 1.34267 4.58836 3.66616 0.02591 1.09861 0.40547 38 2.70291 0.19836 3.59850 2.45869 118 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 39 2.67991 0.53795 2.27106 1.40942 119 C - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 40 1.86480 1.27413 0.88684 1.87441 120 g - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 41 1.20111 1.28533 1.41174 1.72114 121 a - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 42 1.59866 1.28255 1.15443 1.58345 122 g - - > 1.38629 1.38629 1.38629 1.38629 0.02781 4.05926 4.58836 0.93276 0.49999 1.09861 0.40547 43 1.34845 1.98899 0.81121 1.83758 124 g - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 44 0.80294 1.46672 2.13225 1.59585 125 a - - , 1.38629 1.38629 1.38629 1.38629 0.37604 4.58836 1.19317 1.46634 0.26236 1.09861 0.40547 45 2.67836 2.96220 0.18603 3.00832 126 G - - , 1.38629 1.38629 1.38629 1.38629 0.06227 3.08386 4.22732 1.40410 0.28182 0.06547 2.75876 46 2.73204 4.05260 0.11327 3.70375 145 G - - , 1.38629 1.38629 1.38629 1.38629 0.49737 0.96312 4.58805 0.05247 2.97354 1.10882 0.40040 47 3.19136 0.19729 3.63998 2.19213 147 C - - , 1.38629 1.38629 1.38629 1.38629 0.02056 4.58805 4.58805 1.46634 0.26236 1.09462 0.40746 48 3.60466 0.12315 3.40205 2.89382 148 C - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58820 4.58820 1.46634 0.26236 1.10409 0.40274 49 2.20412 0.80914 1.43422 1.57934 149 c - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58820 4.58820 1.46634 0.26236 1.08774 0.41094 50 1.72430 2.68141 0.39645 2.51913 150 G - - < 1.38629 1.38629 1.38629 1.38629 0.02769 4.06632 4.58836 0.93839 0.49636 1.09861 0.40547 51 2.11398 2.83548 0.28437 2.68733 152 G - - < 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 52 2.73954 3.51991 0.13852 3.34798 153 G - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.58836 4.08121 1.46634 0.26236 1.09861 0.40547 53 3.26154 3.15696 3.74076 0.11051 154 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02069 4.58162 4.58162 1.46634 0.26236 0.79046 0.60447 54 3.16684 3.08198 3.55421 0.12399 155 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 55 3.84631 0.07913 4.40801 3.15736 156 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 56 1.01430 3.25535 0.60686 2.92406 157 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 57 0.08104 3.82510 3.67070 3.48769 158 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 58 2.18831 1.87059 2.41230 0.43966 159 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02638 4.14366 4.58836 1.00214 0.45743 1.09861 0.40547 59 2.86401 1.98353 3.36500 0.26031 161 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02070 4.58836 4.57344 1.46634 0.26236 1.09861 0.40547 60 3.63269 0.15785 3.36792 2.46375 163 C - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58821 4.58821 1.46634 0.26236 1.08869 0.41047 61 2.95425 0.32480 2.66094 1.86223 164 C - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 62 2.77754 0.47349 2.49801 1.45786 165 C - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 63 1.85380 1.53180 0.70944 2.00032 166 g - - > 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 64 3.08277 3.54004 0.11396 3.41534 167 G - - > 1.38629 1.38629 1.38629 1.38629 0.02562 4.19117 4.58836 1.04339 0.43426 1.09861 0.40547 65 2.50216 0.84297 2.47234 0.90814 169 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02055 4.58836 4.58836 1.46634 0.26236 1.09861 0.40547 66 1.16698 1.49038 1.24498 1.74034 170 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02820 4.14304 4.42848 1.00161 0.45774 1.09861 0.40547 67 1.26680 1.80941 1.52102 1.09056 172 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02059 4.58660 4.58660 1.46634 0.26236 1.06690 0.42171 68 2.01077 1.07871 0.99379 1.85848 173 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02057 4.58728 4.58728 1.46634 0.26236 1.12542 0.39233 69 3.33399 3.63604 0.08920 3.75818 174 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02057 4.58728 4.58728 1.46634 0.26236 1.04707 0.43227 70 3.78091 4.57992 0.04625 4.41124 175 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02055 4.58811 4.58811 1.46634 0.26236 1.09861 0.40547 71 0.05093 4.54100 3.72371 4.21008 176 A - - ) 1.38629 1.38629 1.38629 1.38629 0.04071 3.51779 4.58239 1.19998 0.35839 1.09861 0.40547 72 0.27780 3.22025 1.87406 3.01369 180 A - - : 1.38629 1.38629 1.38629 1.38629 0.01039 4.57210 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Gly ACC euk-Gly-r2-031616 STATES 227 NODES 60 CLEN 71 W 474 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 08:55:32 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Gly-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Gly-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gly-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gly-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gly-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Gly-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Gly-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1688 EFFN 1688.000000 CKSUM 1524481151 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.0017 0.71885 ECMLC 0.62832 -8.11798 1.76383 1600000 596614 0.002011 ECMGC 0.32020 -44.59112 -31.70330 1600000 24788 0.016137 ECMLI 0.65834 -7.01290 2.27987 1600000 544664 0.002203 ECMGI 0.33555 -41.60882 -29.29303 1600000 24936 0.016041 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 474 975 -15.648 -16.894 -0.000 -12.184 IL 1 1 2 1 4 24 47 476 977 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 49 476 978 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 161 - A - - MR 3 2 3 5 5 27 52 475 976 -5.437 -0.034 -15.512 -15.724 -16.616 1.939 -4.864 -3.463 -4.645 D 4 2 3 5 5 21 42 473 974 -5.652 -1.007 -3.279 -4.710 -1.550 IR 5 5 3 5 5 27 53 477 978 -0.599 -1.564 -12.176 -10.344 -11.450 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 157 G C - - MP 6 5 3 10 6 26 51 474 975 -7.073 -5.550 -0.047 -15.344 -15.624 -8.241 -4.346 -3.340 -2.806 -2.628 -11.544 -4.462 -5.848 -5.494 -5.570 3.874 -5.350 -1.698 -1.373 -4.603 -6.296 -6.835 ML 7 5 3 10 6 24 46 473 975 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 23 45 472 973 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 20 41 471 973 -9.502 -8.200 -3.997 -4.680 -4.697 -0.226 IL 10 10 5 10 6 25 47 472 973 -6.425 -6.687 -0.983 -8.343 -1.098 -8.779 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 22 44 474 976 -1.019 -6.071 -1.606 -9.662 -2.626 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 154 C G - - MP 12 11 6 16 6 28 50 472 973 -16.587 -6.341 -0.018 -15.303 -15.583 -15.978 -4.976 -10.607 -4.683 -2.046 -2.675 -10.495 3.827 -4.372 -10.762 -1.421 -6.072 -1.007 -1.855 -11.087 -3.059 -9.481 ML 13 11 6 16 6 24 48 473 974 -11.416 -0.040 -6.477 -6.171 -11.612 -9.142 1.987 -6.805 -6.157 -6.339 MR 14 11 6 16 6 23 45 470 971 -10.137 -8.866 -4.775 -8.844 -0.073 -7.058 -3.574 -5.020 1.939 -4.314 D 15 11 6 16 6 19 41 471 973 -14.114 -0.175 -8.609 -9.291 -9.309 -3.201 IL 16 16 5 16 6 22 43 471 972 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 26 49 472 973 -0.871 -1.146 -12.383 -10.550 -11.656 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 150 a u - - MP 18 17 6 22 6 27 48 470 971 -6.177 -16.561 -0.022 -15.338 -9.680 -16.013 -4.758 -4.087 -4.082 2.997 -11.534 -11.002 0.871 -5.239 -6.364 2.405 -5.197 -1.399 -3.269 -10.261 -3.333 -3.549 ML 19 17 6 22 6 21 42 467 969 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 23 45 469 970 -10.137 -8.866 -0.114 -8.844 -3.978 -7.058 -3.497 -3.189 -4.285 1.907 D 21 17 6 22 6 17 37 463 964 -10.989 -9.688 -5.485 -6.167 -6.184 -0.077 IL 22 22 5 22 6 25 47 470 971 -1.019 -8.503 -0.995 -10.158 -10.934 -10.595 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 22 43 469 970 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 7 149 U A - - MP 24 23 6 28 6 25 46 468 969 -16.626 -16.565 -0.017 -15.342 -6.430 -16.016 -4.860 -5.392 -6.882 -0.351 -2.995 -9.557 2.193 -7.146 -1.874 -2.514 -2.671 -4.005 3.154 -6.199 -0.602 -2.294 ML 25 23 6 28 6 20 41 466 967 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 22 43 467 968 -8.809 -7.538 -0.306 -7.516 -2.650 -5.730 1.734 -2.444 -2.068 -1.993 D 27 23 6 28 6 17 37 463 964 -10.989 -9.688 -3.077 -6.167 -6.184 -0.231 IL 28 28 5 28 6 21 42 467 968 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 21 43 467 968 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 8 148 U A - - MP 30 29 6 34 6 23 44 466 967 -7.110 -16.550 -0.011 -11.241 -15.606 -16.001 -5.828 -2.973 -10.819 0.153 -4.098 -8.675 1.783 -7.972 -4.677 0.088 -11.208 -4.831 3.194 -10.999 -0.095 -6.580 ML 31 29 6 34 6 19 40 464 965 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 21 42 465 966 -11.661 -10.390 -6.299 -10.368 -0.025 -8.582 -5.660 -5.158 -6.512 1.979 D 33 29 6 34 6 17 37 462 963 -10.844 -9.542 -1.234 -6.021 -6.039 -0.882 IL 34 34 5 34 6 22 43 465 966 -6.373 -6.636 -0.043 -8.291 -9.068 -8.728 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 20 42 465 966 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 10 147 G C - - MP 36 35 6 40 6 21 42 464 965 -16.611 -16.550 -0.004 -15.327 -8.711 -16.002 -10.578 -4.496 -7.334 0.960 -7.596 -7.825 -0.614 -11.086 -8.339 3.487 -11.080 -1.174 -0.259 -7.096 -0.269 -7.249 ML 37 35 6 40 6 19 39 462 964 -7.204 -7.550 -0.531 -1.959 -7.400 -4.930 -0.087 0.340 -0.355 0.015 MR 38 35 6 40 6 20 41 464 965 -0.057 -10.390 -6.299 -10.368 -5.502 -8.582 1.984 -6.460 -5.837 -6.037 D 39 35 6 40 6 17 36 461 962 -10.106 -8.804 -0.835 -5.283 -5.301 -1.376 IL 40 40 5 40 6 20 41 463 964 -7.028 -7.290 -0.027 -8.946 -9.722 -9.382 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 40 463 964 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 12 146 G C - - MP 42 41 6 46 4 19 40 462 963 -15.851 -16.058 -0.000 -14.472 -10.592 -4.660 -10.410 0.615 -11.540 -7.978 0.556 -6.355 -5.120 3.198 -5.721 1.317 0.221 -4.503 -6.306 -9.376 ML 43 41 6 46 4 17 38 461 962 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 18 38 461 962 -7.557 -6.586 -0.157 -3.514 -1.681 -2.041 1.690 -2.198 D 45 41 6 46 4 15 36 459 960 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 18 39 462 963 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 18 38 461 963 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 13 - U - - - ML 48 47 6 50 3 17 38 460 961 -16.764 -0.000 -15.418 -10.545 -6.461 -6.510 1.992 D 49 47 6 50 3 15 36 458 959 -6.174 -1.687 -0.566 IL 50 50 3 50 3 17 38 460 962 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 14 - G - - - ML 51 50 3 53 2 16 37 459 960 -7.065 -0.011 -0.572 -5.241 1.714 -5.625 D 52 50 3 53 2 15 36 458 959 -8.445 -0.004 IL 53 53 3 53 2 16 37 459 960 -5.677 -0.028 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 15 36 458 959 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 6 126 260 -16.764 -0.000 -15.418 IL 56 56 2 56 3 1 6 127 262 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 99 - a - - - ML 57 56 2 59 3 1 6 126 260 -2.666 -0.247 -15.418 0.739 -0.134 -0.891 -0.184 D 58 56 2 59 3 0 1 107 242 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 138 273 -0.197 -2.968 -14.464 0.000 0.000 0.000 0.000 [ MATL 44 ] 120 - G - - - ML 60 59 3 62 3 1 5 33 52 -16.764 -0.129 -3.548 -4.107 -6.299 1.969 -6.074 D 61 59 3 62 3 0 0 32 51 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 5 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 121 - A - - - ML 63 62 3 65 3 1 5 32 51 -16.635 -0.000 -15.289 1.172 -0.409 -0.201 -3.018 D 64 62 3 65 3 0 0 31 50 -14.639 -0.003 -9.030 IL 65 65 3 65 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 122 - C - - - ML 66 65 3 68 5 1 5 31 50 -15.697 -0.000 -15.512 -15.725 -16.616 -5.601 1.805 -3.565 -1.321 D 67 65 3 68 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 32 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 123 145 C G - - MP 69 68 3 73 6 2 4 30 49 -16.629 -5.110 -0.045 -9.786 -10.693 -16.019 -6.161 -4.072 -6.072 0.061 -3.790 -6.427 3.625 -5.873 -7.247 -0.130 -5.807 0.293 -3.487 -11.059 -2.528 -9.478 ML 70 68 3 73 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 32 51 -1.425 -0.677 -11.613 -9.781 -10.887 0.000 0.000 0.000 0.000 [ MATP 48 ] 124 142 C G - - MP 75 74 6 79 6 2 5 22 40 -16.626 -16.566 -0.000 -15.342 -15.622 -16.017 -5.579 -10.473 -4.721 -2.986 -3.325 -8.392 3.443 -4.943 -7.437 1.346 -2.981 -2.286 0.330 -6.332 -0.615 -7.467 ML 76 74 6 79 6 1 1 22 39 -8.141 -8.487 -0.253 -2.896 -8.337 -5.866 -0.583 -1.361 1.084 -0.280 MR 77 74 6 79 6 1 1 22 39 -8.151 -6.880 -0.518 -6.859 -1.992 -5.072 -0.819 1.238 -1.591 -0.428 D 78 74 6 79 6 0 0 21 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 24 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 23 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 125 141 G C - - MP 81 80 6 85 6 2 5 19 38 -16.629 -16.568 -0.000 -15.345 -15.624 -16.019 -5.298 -2.759 -10.414 0.877 -11.544 -7.009 -1.278 -4.339 -3.923 3.658 -5.898 -1.271 -4.370 -5.119 -5.743 -1.720 ML 82 80 6 85 6 1 1 21 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 21 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 19 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 22 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 21 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 126 140 G C - - MP 87 86 6 91 6 2 3 17 36 -16.629 -16.568 -0.016 -6.538 -15.624 -16.019 -12.991 -3.173 -13.205 -3.343 -14.098 -5.996 -3.072 -13.778 -7.913 3.919 -5.610 -2.098 -2.107 -4.762 -11.097 -12.184 ML 88 86 6 91 6 1 1 19 36 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 19 35 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 17 34 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 20 36 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 19 35 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 127 139 G C - - MP 93 92 6 97 4 2 3 15 34 -7.068 -16.046 -0.011 -14.460 -5.335 -3.321 -17.128 -5.600 -16.197 -4.372 -10.472 -16.486 -4.483 3.962 -12.728 -2.932 -10.843 -4.655 -12.932 -16.347 ML 94 92 6 97 4 1 1 17 35 -8.118 -0.080 -4.545 -7.030 -3.762 -3.591 -3.784 1.915 MR 95 92 6 97 4 1 1 16 34 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 15 33 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 15 33 -5.726 -6.409 -0.048 -8.894 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 16 34 -5.032 -4.388 -0.118 0.000 0.000 0.000 0.000 [ MATL 52 ] 129 - U - - - ML 99 98 6 101 3 1 1 13 32 -16.748 -0.000 -15.402 -6.483 -5.333 -6.302 1.982 D 100 98 6 101 3 0 0 15 33 -11.665 -0.022 -6.057 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 130 - U - - - ML 102 101 3 104 3 1 1 12 31 -16.764 -0.000 -15.418 -9.970 -4.173 -5.996 1.974 D 103 101 3 104 3 0 0 17 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 131 - C - - - ML 105 104 3 107 3 1 1 11 29 -7.085 -0.011 -15.418 -5.809 1.919 -6.167 -2.416 D 106 104 3 107 3 0 0 14 32 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 11 30 -4.548 -0.073 -7.248 0.000 0.000 0.000 0.000 [ MATL 55 ] 133 - G - - - ML 108 107 3 110 3 1 1 10 28 -7.125 -0.010 -15.418 -1.508 -5.940 1.853 -5.697 D 109 107 3 110 3 0 0 14 33 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 11 29 -4.513 -0.075 -7.213 0.000 0.000 0.000 0.000 [ MATL 56 ] 135 - A - - - ML 111 110 3 113 3 1 1 9 27 -16.764 -0.000 -15.418 1.964 -6.871 -5.325 -3.951 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 136 - U - - - ML 114 113 3 116 3 1 1 7 25 -16.764 -0.000 -12.520 -2.185 -2.558 -1.447 1.698 D 115 113 3 116 3 0 0 13 32 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 137 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -6.548 -2.694 -6.601 1.935 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 0 15 435 937 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 170 0 15 435 937 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 0 23 41 -0.000 -14.757 -14.165 -14.805 [ MATP 15 ] 16 34 G U - - MP 124 123 1 128 6 2 3 23 41 -7.134 -16.568 -0.010 -15.345 -15.624 -16.019 -12.674 -11.334 -12.869 -3.136 -15.009 -4.717 -10.467 -5.792 -2.764 1.222 -4.774 3.722 -10.392 -14.174 -12.298 -3.134 ML 125 123 1 128 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 41 -6.368 -6.631 -0.043 -8.286 -9.062 -8.722 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 18 33 U A - - MP 130 129 6 134 6 2 3 21 39 -16.629 -16.568 -0.000 -15.345 -15.624 -16.019 -5.521 -13.930 -12.989 -4.120 -3.782 -13.139 -0.988 -12.257 -13.089 -4.027 -13.214 -12.302 3.919 -4.855 -3.811 -4.212 ML 131 129 6 134 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 19 32 U A - - MP 136 135 6 140 6 2 3 19 37 -16.629 -16.568 -0.000 -15.345 -15.624 -16.019 -3.833 0.329 -8.252 -2.774 -2.421 -7.823 0.047 -10.456 -7.230 2.176 -11.291 -8.146 3.123 -5.789 -4.977 -7.264 ML 137 135 6 140 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 20 31 c g - - MP 142 141 6 146 4 2 2 17 35 -15.854 -16.061 -0.000 -14.476 0.020 -10.959 -6.122 -2.830 -0.920 -4.428 2.664 -10.703 -5.907 -6.564 -11.564 -4.591 1.441 -11.404 1.422 1.294 ML 143 141 6 146 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 21 - A - - - ML 148 147 6 150 3 1 1 14 32 -16.764 -0.000 -15.418 1.979 -6.839 -4.636 -6.733 D 149 147 6 150 3 0 0 19 37 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 22 - G - - - ML 151 150 3 153 3 1 1 13 31 -16.764 -0.000 -15.418 -0.878 -6.704 1.780 -6.500 D 152 150 3 153 3 0 0 18 36 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - U - - - ML 154 153 3 156 3 1 1 12 30 -6.428 -0.017 -15.418 -5.309 -2.438 -3.072 1.876 D 155 153 3 156 3 0 0 13 31 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 13 32 -5.143 -0.591 -1.701 0.000 0.000 0.000 0.000 [ MATL 22 ] 25 - G - - - ML 157 156 3 159 3 1 1 10 29 -16.758 -0.000 -15.412 -6.681 -7.025 1.991 -6.873 D 158 156 3 159 3 0 0 13 32 -10.237 -5.750 -0.028 IL 159 159 3 159 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - G - - - ML 160 159 3 162 3 1 1 9 27 -16.758 -0.000 -15.412 -5.617 -6.706 1.985 -6.514 D 161 159 3 162 3 0 0 12 30 -10.237 -0.061 -4.628 IL 162 162 3 162 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - U - - - ML 163 162 3 165 3 1 1 8 14 -1.688 -0.536 -15.418 -5.939 -3.213 -5.943 1.948 D 164 162 3 165 3 0 0 6 12 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 7 14 -4.110 -0.086 -12.557 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - A - - - ML 166 165 3 168 2 1 1 1 1 * 0.000 1.894 -6.760 -1.924 -6.683 D 167 165 3 168 2 0 0 0 0 * 0.000 IL 168 168 3 168 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 169 168 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 170 122 1 171 3 0 0 420 921 -16.764 -0.000 -11.640 IL 171 171 2 171 3 1 1 421 923 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 35 - u - - - ML 172 171 2 174 5 1 1 420 921 -15.697 -0.000 -15.512 -15.724 -16.616 0.024 -1.273 -0.081 0.700 D 173 171 2 174 5 0 0 418 919 -5.702 -0.425 -4.963 -3.338 -3.251 IL 174 174 3 174 5 1 1 420 921 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 36 98 C G - - MP 175 174 3 179 6 2 2 419 920 -16.629 -16.568 -0.000 -15.345 -15.624 -16.019 -10.925 -10.626 -5.895 -0.933 -1.831 -6.441 3.477 -6.952 -10.783 0.159 -5.406 0.828 -0.898 -11.108 -0.836 -7.332 ML 176 174 3 179 6 1 1 416 917 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 177 174 3 179 6 1 1 415 917 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 178 174 3 179 6 0 0 410 911 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 179 179 5 179 6 1 1 418 919 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 180 180 6 180 5 1 1 418 919 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 37 97 u g - - MP 181 180 6 185 6 2 2 417 918 -16.629 -7.030 -0.011 -15.345 -15.624 -16.019 -8.075 -6.432 -10.708 1.888 -4.959 -11.553 1.425 -4.509 -10.598 0.968 -6.850 -3.508 1.306 -10.883 2.301 -3.964 ML 182 180 6 185 6 1 1 414 915 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 6 185 6 1 1 413 915 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 6 185 6 0 0 408 910 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 416 917 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 416 917 -5.636 -0.046 -9.147 -7.314 -8.420 0.000 0.000 0.000 0.000 [ MATP 31 ] 38 95 u a - - MP 187 186 6 191 6 2 2 415 916 -16.629 -16.568 -0.000 -15.345 -15.624 -16.019 -5.798 -2.924 -6.969 1.941 -2.168 -5.548 2.446 -5.493 -8.865 -1.635 -5.280 -7.272 2.469 -5.257 -1.731 -3.928 ML 188 186 6 191 6 1 1 412 914 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 411 913 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 407 908 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 414 915 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 414 915 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 39 94 G C - - MP 193 192 6 197 6 2 2 413 914 -6.834 -16.568 -0.013 -15.345 -15.624 -16.019 -4.119 -2.328 -4.591 -1.477 -6.683 -4.859 1.948 -8.084 -5.217 3.455 -8.098 -1.585 -4.391 -5.551 -5.964 -5.542 ML 194 192 6 197 6 1 1 411 912 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 409 910 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 406 907 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 412 913 -6.648 -6.911 -0.036 -8.566 -9.343 -9.003 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 412 913 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 41 93 C G - - MP 199 198 6 203 4 2 2 411 912 -15.854 -16.061 -0.000 -14.476 -7.859 -5.539 -5.481 1.529 -3.157 -4.325 3.284 -4.984 -7.765 1.279 -4.780 -4.074 -1.189 -9.642 -3.387 -3.820 ML 200 198 6 203 4 1 1 409 910 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 4 1 1 407 908 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 202 198 6 203 4 0 0 405 906 -4.568 -4.250 -2.265 -0.520 IL 203 203 5 203 4 1 1 410 912 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 204 204 6 204 3 1 1 410 911 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - C - - - ML 205 204 6 207 3 1 1 409 910 -16.764 -0.000 -15.418 -5.660 1.401 -6.712 0.411 D 206 204 6 207 3 0 0 403 904 -6.174 -1.687 -0.566 IL 207 207 3 207 3 1 1 409 910 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - U - - - ML 208 207 3 210 3 1 1 408 909 -16.764 -0.000 -15.418 -13.270 -3.403 -14.402 1.965 D 209 207 3 210 3 0 0 400 901 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 408 909 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - u - - - ML 211 210 3 213 3 1 1 407 908 -16.764 -0.000 -15.418 0.002 -0.002 -0.002 0.002 D 212 210 3 213 3 0 0 396 897 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 406 908 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - u - - - ML 214 213 3 216 3 1 1 406 907 -7.099 -0.011 -15.418 0.002 -0.002 -0.002 0.002 D 215 213 3 216 3 0 0 389 890 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 406 907 -4.536 -0.074 -7.236 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - c - - - ML 217 216 3 219 3 1 1 405 906 -16.764 -0.000 -15.418 -0.009 0.029 -0.013 -0.008 D 218 216 3 219 3 0 0 376 877 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 403 904 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - A - - - ML 220 219 3 222 3 1 1 404 905 -1.984 -0.421 -15.418 1.953 -6.374 -3.212 -6.888 D 221 219 3 222 3 0 0 324 825 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 440 942 -0.053 -4.793 -16.970 0.000 0.000 0.000 0.000 [ MATL 40 ] 92 - u - - - ML 223 222 3 225 2 1 1 1 1 * 0.000 0.596 -0.193 -5.418 0.669 D 224 222 3 225 2 0 0 0 0 * 0.000 IL 225 225 3 225 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 226 225 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Gly ACC euk-Gly-r2-031616 LENG 71 MAXL 467 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 08:55:33 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Gly-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Gly-r2-031616.sto NSEQ 1688 EFFN 17.163712 CKSUM 1524481151 STATS LOCAL MSV -8.1524 0.71885 STATS LOCAL VITERBI -9.0709 0.71885 STATS LOCAL FORWARD -3.5847 0.71885 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56307 1.45025 1.22299 1.34075 1.38629 1.38629 1.38629 1.38629 0.01386 4.97855 4.97855 1.46634 0.26236 0.00000 * 1 2.27554 3.08743 0.24144 2.71593 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02606 4.60090 4.15522 1.06086 0.42489 1.09861 0.40547 2 2.69678 0.36755 2.24652 2.00705 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01723 4.96972 4.59172 1.46634 0.26236 0.67428 0.71238 3 0.95115 2.13935 0.84984 2.68110 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02697 3.98061 4.83685 0.95862 0.48357 0.89110 0.52798 4 2.13055 1.25047 2.11948 0.74494 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02394 4.97686 4.08890 1.46634 0.26236 1.03960 0.43633 5 2.19830 1.35023 2.10688 0.67686 8 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02027 4.33479 4.96808 0.85352 0.55498 0.59993 0.79596 6 1.83003 2.67620 0.41953 2.17674 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01589 4.97836 4.72422 1.46634 0.26236 1.07073 0.41970 7 1.93398 2.30862 0.41668 2.33514 12 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01389 4.97666 4.97666 1.46634 0.26236 0.93655 0.49754 8 4.04148 3.81269 4.36549 0.05379 13 U - - , 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 9 1.78366 3.75014 0.24924 3.53812 14 G - - , 1.38629 1.38629 1.38629 1.38629 0.02031 4.32601 4.97865 0.83952 0.56549 1.09861 0.40547 10 2.86981 3.73499 0.11421 3.59924 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02002 4.34736 4.97865 0.85498 0.55390 1.09861 0.40547 11 4.95507 3.60801 4.85018 0.04289 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 12 2.03541 1.82710 1.32120 0.81717 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 13 1.95776 1.05687 2.20897 0.91262 20 u - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 14 0.03437 4.78317 4.13837 4.66000 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 15 2.02020 4.18260 0.18454 3.88101 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 16 3.51729 2.80796 3.31603 0.13502 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02060 4.30497 4.97865 0.82456 0.57702 1.09861 0.40547 17 4.52234 5.40780 0.02258 4.96457 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01715 4.97865 4.59305 1.46634 0.26236 1.09861 0.40547 18 4.29456 5.24339 0.02730 4.82801 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01391 4.97541 4.97541 1.46634 0.26236 0.85870 0.55115 19 3.63109 3.09264 4.05764 0.09339 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32480 1.30768 4.97865 0.10519 2.30409 1.09861 0.40547 20 0.10451 4.28161 2.65399 4.19661 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 21 1.35720 2.37762 0.81353 1.57717 31 g - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 22 0.85742 1.21176 1.72785 2.29854 32 a - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 23 0.04971 4.90583 3.46873 4.61162 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 24 3.67172 1.64906 3.60067 0.28100 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.01411 4.97865 4.94344 1.46634 0.26236 1.09861 0.40547 25 1.30406 2.01488 1.51264 0.98107 35 u - - , 1.38629 1.38629 1.38629 1.38629 0.01387 4.97841 4.97841 1.46634 0.26236 1.07527 0.41734 26 2.54887 0.56109 1.67297 1.81061 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 27 1.56619 1.48744 1.82283 0.90722 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 28 1.49136 1.13070 2.22713 1.06627 38 u - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 29 2.20583 1.66033 0.44038 2.88287 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.02145 4.24449 4.97865 0.78291 0.61078 1.09861 0.40547 30 1.71733 0.71348 1.70998 1.89948 41 c - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 31 3.20813 0.47805 3.93516 1.13933 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 32 4.25731 3.31933 4.77010 0.06062 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 33 1.31579 1.46339 1.47419 1.30445 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 34 1.31579 1.46339 1.47419 1.30445 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02016 4.33717 4.97865 0.84756 0.55942 1.09861 0.40547 35 1.32060 1.44727 1.47984 1.30882 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 36 0.05818 4.43899 3.43075 4.39447 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.25951 1.50649 4.97865 3.30842 0.03726 1.09861 0.40547 37 1.04837 1.51265 2.88832 0.98485 92 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 38 2.10015 1.79570 0.67044 1.60911 93 G - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 39 3.10229 0.48425 1.60917 1.97441 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 40 1.16712 2.32553 1.04750 1.42631 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.02049 4.31267 4.97865 0.83000 0.57279 1.09861 0.40547 41 1.63129 1.93350 0.84895 1.46179 97 g - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 42 2.05556 2.24655 0.50456 1.81741 98 G - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 43 0.96272 1.53000 1.88872 1.38491 99 a - - , 1.38629 1.38629 1.38629 1.38629 0.15969 1.96108 4.97865 2.04661 0.13831 1.09861 0.40547 44 3.76529 4.90859 0.04209 4.54023 120 G - - , 1.38629 1.38629 1.38629 1.38629 0.09035 4.97865 2.53196 1.46634 0.26236 1.09861 0.40547 45 0.66225 1.72235 1.58484 2.29577 121 A - - , 1.38629 1.38629 1.38629 1.38629 0.01496 4.90326 4.90326 1.46634 0.26236 0.15970 1.91325 46 3.62275 0.17907 3.61944 2.20320 122 C - - , 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 47 2.28722 0.49700 1.83521 2.03624 123 C - - < 1.38629 1.38629 1.38629 1.38629 0.01437 4.97865 4.90879 1.46634 0.26236 1.09861 0.40547 48 2.67973 0.60390 1.67382 1.62346 124 C - - < 1.38629 1.38629 1.38629 1.38629 0.01387 4.97816 4.97816 1.46634 0.26236 1.05258 0.42930 49 1.82740 2.81060 0.33637 2.73895 125 G - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 50 2.72563 3.41854 0.15148 3.16299 126 G - - < 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 51 3.14080 3.93465 0.09003 3.75944 127 G - - < 1.38629 1.38629 1.38629 1.38629 0.02951 4.33274 4.13818 0.84436 0.56182 1.09861 0.40547 52 3.72689 3.53920 4.15131 0.07133 129 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01399 4.96954 4.96954 1.46634 0.26236 0.62220 0.76952 53 3.84009 3.38035 4.14328 0.07407 130 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 54 4.13149 0.08239 4.50666 2.95662 131 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02022 4.33265 4.97865 0.84430 0.56187 1.09861 0.40547 55 2.37623 4.11546 0.14071 3.81480 133 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02005 4.34567 4.97865 0.85374 0.55481 1.09861 0.40547 56 0.05018 4.41682 4.15242 3.85649 135 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 57 2.56024 2.73716 2.43479 0.26092 136 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01399 4.97865 4.96063 1.46634 0.26236 1.09861 0.40547 58 3.68116 2.92488 4.13267 0.09972 137 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97853 4.96663 1.46634 0.26236 1.08663 0.41151 59 4.03658 0.09562 3.94500 2.91544 139 C - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97857 4.97857 1.46634 0.26236 1.09070 0.40945 60 3.38323 0.17573 3.25460 2.42335 140 C - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 61 3.14021 0.38774 2.68052 1.56252 141 C - - > 1.38629 1.38629 1.38629 1.38629 0.01482 4.97865 4.85001 1.46634 0.26236 1.09861 0.40547 62 1.88467 1.81701 0.52011 2.39516 142 G - - > 1.38629 1.38629 1.38629 1.38629 0.03923 3.45531 4.97771 0.69044 0.69586 1.01472 0.45021 63 2.27010 2.28805 0.45681 1.82059 145 G - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.97865 4.97865 1.46634 0.26236 1.09861 0.40547 64 2.47135 0.61024 2.20620 1.33869 146 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01449 4.97865 4.89197 1.46634 0.26236 1.09861 0.40547 65 2.61226 0.48422 2.21766 1.60152 147 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01426 4.97803 4.92422 1.46634 0.26236 1.08191 0.41392 66 0.79958 2.19400 1.16126 2.07209 148 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01387 4.97788 4.97788 1.46634 0.26236 1.13085 0.38973 67 0.83997 2.41559 1.09133 1.94358 149 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01387 4.97788 4.97788 1.46634 0.26236 1.13085 0.38973 68 2.99157 0.93936 2.00979 0.85591 150 u - - ) 1.38629 1.38629 1.38629 1.38629 0.04309 3.34415 4.97788 0.70094 0.68542 1.13085 0.38973 69 2.17789 2.60608 0.33723 2.31113 154 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03249 3.68579 4.97788 0.88873 0.52963 1.03709 0.43771 70 2.90965 0.28052 2.83348 2.03024 157 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03393 3.63138 4.97855 1.17314 0.37019 1.09861 0.40547 71 0.08297 3.81965 3.39691 3.72088 161 A - - : 1.38629 1.38629 1.38629 1.38629 0.00696 4.97164 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-His ACC euk-His-r2-031616 STATES 230 NODES 61 CLEN 72 W 381 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 09:16:59 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-His-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-His-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-His-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-His-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-His-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-His-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-His-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 479 EFFN 479.000000 CKSUM 3021166529 NULL 0.000 0.000 0.000 0.000 EFP7GF -15.3108 0.71877 ECMLC 0.77141 -5.54095 2.40820 1600000 552475 0.002172 ECMGC 0.34675 -38.68410 -26.40931 1600000 28218 0.014175 ECMLI 0.65955 -6.39046 2.76089 1600000 501723 0.002392 ECMGI 0.36724 -35.40421 -23.81704 1600000 28189 0.014190 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 381 755 -13.835 -15.081 -0.001 -11.534 IL 1 1 2 1 4 19 42 383 757 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 43 383 757 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 147 - A - - MR 3 2 3 5 5 25 52 382 756 -4.886 -0.050 -13.700 -13.913 -14.804 1.832 -3.112 -3.460 -2.094 D 4 2 3 5 5 16 38 379 753 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 22 48 384 758 -0.617 -1.536 -10.940 -9.108 -10.214 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 143 G C - - MP 6 5 3 10 6 25 51 381 755 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -12.269 -1.349 -13.304 -6.599 -13.640 -10.494 -0.286 -13.511 -8.712 3.801 -8.761 -0.555 -2.957 -5.658 -10.525 -12.297 ML 7 5 3 10 6 18 40 378 753 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 40 378 752 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 36 373 747 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 41 380 754 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 41 380 754 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 142 C G - - MP 12 11 6 16 6 24 49 379 753 -14.827 -14.766 -0.005 -13.543 -8.295 -14.218 -9.139 -8.840 -5.328 -3.378 -2.207 -9.980 3.405 -6.033 -8.996 1.553 -9.509 -2.702 0.915 -9.321 -4.602 -5.128 ML 13 11 6 16 6 17 39 377 751 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 40 377 751 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 36 371 745 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 41 378 752 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 41 378 752 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 141 C G - - MP 18 17 6 22 6 23 47 377 751 -14.823 -14.762 -0.000 -13.538 -13.818 -14.213 -9.190 -8.894 -3.766 -4.722 -4.168 -10.016 3.337 -3.495 -9.044 1.898 -6.597 -3.839 -0.864 -9.369 -0.130 -1.481 ML 19 17 6 22 6 17 39 375 749 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 40 375 750 -8.522 -7.251 -0.383 -7.229 -2.363 -5.442 1.636 -2.038 -1.703 -1.549 D 21 17 6 22 6 13 36 370 744 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 40 376 750 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 41 376 750 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 140 g c - - MP 24 23 6 28 6 21 45 375 749 -14.827 -14.766 -0.014 -6.818 -10.076 -14.218 -1.591 -4.343 -7.852 1.969 -5.947 -6.605 1.832 -8.277 -3.594 2.543 -8.497 -0.533 0.010 -7.868 -1.095 -5.316 ML 25 23 6 28 6 17 39 373 747 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 39 372 746 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 36 368 742 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 40 374 748 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 40 374 748 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 139 u a - - MP 30 29 6 34 6 19 43 373 747 -14.813 -14.752 -0.000 -13.529 -13.809 -14.204 -8.964 -4.323 -8.985 0.107 -6.436 -2.603 1.811 -8.569 -2.334 1.071 -9.382 -4.614 2.921 -6.508 0.323 -7.619 ML 31 29 6 34 6 17 41 372 746 -9.088 -9.435 -0.126 -3.843 -9.284 -6.814 -2.796 -2.579 -3.572 1.850 MR 32 29 6 34 6 15 38 370 744 -7.594 -6.323 -2.231 -6.301 -0.488 -4.514 -0.269 -0.545 -0.898 0.962 D 33 29 6 34 6 12 36 367 741 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 39 372 746 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 39 372 746 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 138 g c - - MP 36 35 6 40 6 17 41 371 745 -14.826 -14.765 -0.000 -13.542 -13.821 -14.217 -4.170 -4.949 -8.976 -0.724 -5.415 -9.806 1.935 -8.605 -8.880 2.750 -6.850 -3.658 1.629 -9.135 0.382 -2.063 ML 37 35 6 40 6 15 38 370 744 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 38 369 743 -7.594 -6.323 -2.231 -6.301 -0.488 -4.514 1.123 -1.003 -0.750 -0.459 D 39 35 6 40 6 12 36 367 741 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 39 370 744 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 39 370 744 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 137 g c - - MP 42 41 6 46 4 15 39 369 743 -4.346 -4.844 -0.127 -12.661 -8.817 -5.196 -6.433 2.772 -9.767 -9.235 -0.926 -9.324 -4.363 2.780 -9.319 -2.918 0.614 -8.492 -6.842 -7.600 ML 43 41 6 46 4 13 37 368 742 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 37 367 741 -5.489 -4.518 -2.385 -0.429 -0.240 0.715 -0.959 -0.004 D 45 41 6 46 4 12 36 366 740 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 39 374 748 -0.268 -9.836 -2.571 -12.321 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 38 368 742 -4.930 -0.056 -7.630 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - U - - - ML 48 47 6 50 3 13 37 367 741 -14.949 -0.000 -13.603 -11.283 -5.677 -12.358 1.993 D 49 47 6 50 3 11 36 365 739 -7.186 -0.604 -1.578 IL 50 50 3 50 3 13 37 367 741 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 15 - a - - - ML 51 50 3 53 2 12 36 366 740 -15.605 -0.000 0.786 -0.106 0.380 -4.444 D 52 50 3 53 2 11 35 365 739 -8.445 -0.004 IL 53 53 3 53 2 12 36 366 740 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 11 35 365 739 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 2 96 189 -14.951 -0.000 -13.605 IL 56 56 2 56 3 1 1 97 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 93 - a - - - ML 57 56 2 59 3 1 2 96 189 -1.917 -0.444 -13.605 0.729 0.313 -1.484 -0.428 D 58 56 2 59 3 0 0 80 173 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 2 102 195 -0.286 -2.478 -12.915 0.000 0.000 0.000 0.000 [ MATL 45 ] 113 - G - - - ML 60 59 3 62 3 1 1 38 64 -4.886 -0.208 -3.318 0.967 -9.558 1.009 -4.967 D 61 59 3 62 3 0 0 36 62 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 38 64 -4.894 -0.057 -7.594 0.000 0.000 0.000 0.000 [ MATL 46 ] 115 - A - - - ML 63 62 3 65 3 1 1 37 63 -14.798 -0.000 -13.452 1.417 -2.632 -1.687 -0.220 D 64 62 3 65 3 0 0 36 62 -13.062 -0.008 -7.454 IL 65 65 3 65 3 1 1 38 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 116 - C - - - ML 66 65 3 68 5 1 1 36 62 -13.885 -0.000 -13.700 -13.913 -14.804 -5.562 1.709 -4.672 -0.575 D 67 65 3 68 5 0 0 34 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 36 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 117 135 C G - - MP 69 68 3 73 6 2 2 35 61 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -10.904 -10.043 -10.633 -0.945 -9.807 -5.830 3.273 -5.532 -10.670 1.540 -10.985 1.470 -6.187 -11.002 -3.745 -9.456 ML 70 68 3 73 6 1 1 33 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 33 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 118 134 C G - - MP 75 74 6 79 6 2 2 33 59 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -9.353 -9.068 -4.613 -4.901 -8.165 -5.559 3.411 -8.834 -6.008 -0.187 -9.692 -2.536 1.919 -9.524 -1.309 -7.918 ML 76 74 6 79 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 31 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 32 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 32 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 119 133 g c - - MP 81 80 6 85 6 2 2 31 57 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -4.860 -4.630 -5.867 1.904 -4.784 -9.498 2.136 -6.547 -8.896 2.662 -9.309 -5.673 0.004 -2.199 -2.779 -7.578 ML 82 80 6 85 6 1 1 29 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 29 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 30 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 30 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 120 132 G C - - MP 87 86 6 91 6 2 2 29 55 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -8.812 -4.297 -8.631 0.808 -9.762 -4.064 -4.828 -9.321 -4.795 3.702 -9.313 -1.257 -0.794 -5.623 -6.836 -5.533 ML 88 86 6 91 6 1 1 28 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 27 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 25 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 28 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 28 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 121 131 G C - - MP 93 92 6 97 4 2 2 27 53 -14.041 -14.248 -0.000 -12.662 -12.698 -4.900 -14.768 -2.484 -14.362 -10.569 -8.686 -14.329 -10.751 3.968 -3.327 -5.139 -9.042 -11.029 -11.125 -13.740 ML 94 92 6 97 4 1 1 27 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 26 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 25 51 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 28 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 27 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 122 - U - - - ML 99 98 6 101 3 1 1 25 51 -14.951 -0.000 -13.605 -10.389 -2.576 -11.268 1.938 D 100 98 6 101 3 0 0 23 49 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 123 - U - - - ML 102 101 3 104 3 1 1 24 50 -14.951 -0.000 -13.605 -11.037 -4.843 -12.042 1.987 D 103 101 3 104 3 0 0 22 48 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 124 - C - - - ML 105 104 3 107 3 1 1 23 49 -14.951 -0.000 -13.605 -5.983 1.960 -6.381 -3.593 D 106 104 3 107 3 0 0 21 47 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 24 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 125 - G - - - ML 108 107 3 110 3 1 1 22 48 -14.951 -0.000 -13.605 -1.409 -6.223 1.852 -9.566 D 109 107 3 110 3 0 0 20 46 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 23 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 126 - A - - - ML 111 110 3 113 3 1 1 21 47 -14.951 -0.000 -13.605 1.986 -10.460 -5.995 -5.489 D 112 110 3 113 3 0 0 19 45 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 22 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 127 - U - - - ML 114 113 3 116 3 1 1 20 46 -5.480 -0.033 -13.605 0.785 -4.027 -5.816 1.136 D 115 113 3 116 3 0 0 18 44 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 24 50 -1.027 -0.985 -7.967 0.000 0.000 0.000 0.000 [ MATL 59 ] 130 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -5.915 -3.874 -8.830 1.968 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 0 17 342 716 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 173 0 17 342 716 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 1 25 43 -0.001 -12.951 -12.358 -12.998 [ MATP 15 ] 16 33 G C - - MP 124 123 1 128 6 2 3 25 43 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -12.634 -9.389 -14.490 -6.812 -14.331 -10.593 -8.686 -14.130 -10.749 3.774 -10.956 1.203 -9.033 -11.044 -11.110 -13.384 ML 125 123 1 128 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 17 32 U A - - MP 130 129 6 134 6 2 3 23 41 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -11.869 -12.149 -11.187 -1.509 -5.581 -11.332 2.029 -10.453 -11.290 -8.357 -11.411 -10.550 3.528 -11.704 -7.240 -10.092 ML 131 129 6 134 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 18 31 a u - - MP 136 135 6 140 6 2 3 21 39 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -2.718 -6.370 -6.585 2.722 -8.349 -9.817 2.025 -8.849 -9.056 1.481 -9.505 -4.431 1.191 -9.122 -5.770 -7.733 ML 137 135 6 140 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 19 30 U G - - MP 142 141 6 146 4 2 3 19 37 -14.041 -14.248 -0.000 -12.662 0.052 -12.152 -11.187 -8.388 -5.505 -11.331 1.148 -10.453 0.946 -8.360 -11.411 -10.556 -0.525 -11.704 3.161 0.204 ML 143 141 6 146 4 1 1 25 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 145 141 6 146 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 146 146 5 146 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 148 147 6 150 3 1 2 16 35 -14.951 -0.000 -13.605 1.989 -10.558 -5.955 -6.128 D 149 147 6 150 3 0 0 20 38 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 151 150 3 153 3 1 2 15 33 -14.951 -0.000 -13.605 -1.180 -10.166 1.823 -5.636 D 152 150 3 153 3 0 0 19 37 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 154 153 3 156 3 1 1 14 32 -5.520 -0.032 -13.605 -3.350 -3.765 -4.200 1.916 D 155 153 3 156 3 0 0 16 35 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 14 32 -4.331 -0.085 -7.031 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - G - - - ML 157 156 3 159 3 1 1 13 31 -14.951 -0.000 -13.605 -5.899 -5.917 1.988 -10.208 D 158 156 3 159 3 0 0 17 35 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - G - - - ML 160 159 3 162 3 1 1 11 30 -14.951 -0.000 -13.605 -6.063 -6.474 1.985 -5.998 D 161 159 3 162 3 0 0 15 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - U - - - ML 163 162 3 165 3 1 1 10 28 -2.849 -0.466 -2.868 -1.466 -3.589 -8.505 1.829 D 164 162 3 165 3 0 0 8 27 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 9 28 -6.830 -0.015 -9.530 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - U - - - ML 166 165 3 168 3 1 1 8 27 -14.738 -0.000 -13.392 -2.962 0.103 -2.732 1.404 D 167 165 3 168 3 0 0 8 27 -13.510 -0.006 -7.902 IL 168 168 3 168 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.982 -10.756 -10.137 -4.368 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 173 122 1 174 3 0 1 326 700 -14.951 -0.000 -13.605 IL 174 174 2 174 3 1 1 327 701 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - a - - - ML 175 174 2 177 5 1 1 326 700 -13.885 -0.000 -13.700 -13.913 -14.804 0.567 -3.440 0.108 0.432 D 176 174 2 177 5 0 0 323 698 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 326 700 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 35 92 C G - - MP 178 177 3 182 6 2 2 325 699 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -9.023 -1.568 -9.038 -0.629 -2.605 -5.022 3.010 -2.577 -8.910 0.057 -9.428 -3.571 2.280 -4.063 -0.882 -7.655 ML 179 177 3 182 6 1 1 323 697 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 323 697 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 319 693 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 324 698 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 324 698 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 91 u a - - MP 184 183 6 188 6 2 2 323 697 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -9.339 -9.053 -9.316 0.562 -5.501 -10.122 2.311 -8.823 -9.184 1.113 -9.681 -6.630 2.870 -5.594 -5.630 -7.906 ML 185 183 6 188 6 1 1 321 695 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 321 695 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 318 692 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 322 696 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 322 696 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 90 g c - - MP 190 189 6 194 6 2 2 321 695 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -2.352 -7.483 -8.644 2.268 -9.628 -9.247 -0.198 -9.284 -6.782 2.511 -0.376 -4.752 1.830 -6.039 -6.745 -7.597 ML 191 189 6 194 6 1 1 319 693 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 320 694 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 318 692 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 320 694 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 320 694 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 89 C G - - MP 196 195 6 200 6 2 2 319 693 -14.827 -14.766 -0.000 -13.543 -13.823 -14.218 -11.081 -2.338 -10.674 -6.900 -3.532 -6.770 3.269 -4.256 -10.747 2.289 -10.987 -0.258 -5.735 -11.003 -2.041 -5.785 ML 197 195 6 200 6 1 1 318 692 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 319 693 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 317 692 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 318 692 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 318 692 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 88 G C - - MP 202 201 6 206 4 2 2 317 691 -14.041 -14.248 -0.000 -12.662 -8.803 -3.825 -8.622 1.469 -9.752 -1.914 -0.884 -6.099 -9.060 3.389 -9.306 -1.595 -2.764 -8.476 -2.495 0.259 ML 203 201 6 206 4 1 1 317 691 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 318 692 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 318 692 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 317 691 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 317 691 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - U - - - ML 208 207 6 210 3 1 1 315 689 -14.951 -0.000 -13.605 -10.817 0.269 -11.807 1.482 D 209 207 6 210 3 0 0 318 692 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 316 690 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - - - ML 211 210 3 213 3 1 1 314 688 -14.951 -0.000 -13.605 -3.454 -2.203 -6.235 1.879 D 212 210 3 213 3 0 0 320 694 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 316 690 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - u - - - ML 214 213 3 216 3 1 1 313 687 -14.951 -0.015 -6.571 0.006 -0.006 -0.007 0.007 D 215 213 3 216 3 0 0 323 697 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 315 689 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - u - - - ML 217 216 3 219 3 1 1 312 686 -14.935 -0.000 -13.590 0.006 -0.006 -0.007 0.007 D 218 216 3 219 3 0 0 327 701 -9.900 -5.413 -0.036 IL 219 219 3 219 3 1 1 314 688 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - u - - - ML 220 219 3 222 3 1 1 311 685 -14.935 -0.000 -13.590 0.006 -0.006 -0.007 0.007 D 221 219 3 222 3 0 0 327 701 -9.900 -5.413 -0.036 IL 222 222 3 222 3 1 1 314 688 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - G - - - ML 223 222 3 225 3 1 1 310 684 -1.431 -0.669 -13.590 -0.504 -9.572 1.709 -5.423 D 224 222 3 225 3 0 0 327 701 -0.112 -5.413 -4.292 IL 225 225 3 225 3 1 1 329 703 -0.071 -4.380 -15.325 0.000 0.000 0.000 0.000 [ MATL 41 ] 87 - C - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 0.363 1.184 -1.610 -3.125 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-His ACC euk-His-r2-031616 LENG 72 MAXL 382 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 09:16:59 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-His-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-His-r2-031616.sto NSEQ 479 EFFN 30.642815 CKSUM 3021166529 STATS LOCAL MSV -8.2088 0.71877 STATS LOCAL VITERBI -9.0952 0.71877 STATS LOCAL FORWARD -3.7936 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57012 1.40460 1.22544 1.37482 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 0.00000 * 1 2.80460 2.82961 0.16223 3.50042 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 2 3.25233 0.51041 1.64509 1.78335 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01028 5.60957 5.02532 1.46634 0.26236 1.09861 0.40547 3 3.20770 0.56426 1.47832 1.81554 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00737 5.60666 5.60666 1.46634 0.26236 0.74908 0.64018 4 1.37715 1.53192 0.93106 1.98451 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00816 5.60957 5.41191 1.46634 0.26236 1.09861 0.40547 5 2.25771 1.39803 1.80524 0.72589 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00736 5.60877 5.60877 1.46634 0.26236 1.16893 0.37208 6 2.57763 1.36670 0.97588 1.23018 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00736 5.60877 5.60877 1.46634 0.26236 1.16893 0.37208 7 0.98545 2.94808 0.75442 2.26330 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.05407 3.01659 5.60877 1.77881 0.18493 1.16893 0.37208 8 5.35835 4.55451 5.90777 0.01811 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.00736 5.60877 5.60877 1.46634 0.26236 0.97127 0.47578 9 0.85889 1.53520 1.15785 3.06200 15 a - - , 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 10 4.61477 5.81566 0.01606 5.79218 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 11 3.63886 1.31414 4.99306 0.35921 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 12 1.02186 1.33591 1.62038 1.71852 18 a - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 13 2.69056 1.83227 2.11531 0.42846 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 14 0.01513 5.87932 5.01784 5.18565 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 15 2.25228 5.10873 0.13196 4.38839 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 16 3.36018 3.46752 3.90699 0.08995 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02779 3.74022 5.60957 0.28422 1.39675 1.09861 0.40547 17 4.75788 5.29054 0.01703 5.72542 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 18 4.75198 5.47044 0.01958 5.02959 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 19 2.41669 3.41069 4.66480 0.14117 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.30358 2.02663 2.03984 0.05469 2.93330 1.09861 0.40547 20 2.92260 1.35262 3.08075 0.44361 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00842 5.47445 5.47445 1.46634 0.26236 0.05480 2.93138 21 0.01862 5.79228 5.59376 4.44992 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 22 1.46074 4.91661 0.37945 2.57207 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 23 1.76509 1.67675 1.28496 1.00735 31 u - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 24 0.36613 5.12710 1.29952 3.57587 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 25 5.75428 0.15003 5.65918 2.01993 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 26 1.02646 2.86264 1.36707 1.10940 34 a - - , 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 27 2.36095 0.76956 2.22364 1.09590 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 28 2.26300 1.14343 1.90436 0.84789 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 29 1.25387 2.52360 0.85593 1.56281 37 g - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 30 3.02339 0.62682 1.10018 2.47379 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 31 1.67764 2.72645 0.43791 2.27937 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 32 4.64504 1.24020 5.23600 0.36277 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 33 3.39992 2.79805 4.44948 0.11204 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 34 1.33761 1.43838 1.44506 1.32997 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01710 5.60957 4.32044 1.46634 0.26236 1.09861 0.40547 35 1.33725 1.43879 1.44554 1.32955 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00742 5.59989 5.59989 1.46634 0.26236 1.72804 0.19557 36 1.33725 1.43879 1.44554 1.32955 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00742 5.59989 5.59989 1.46634 0.26236 0.43892 1.03489 37 1.77469 4.78620 0.21529 4.14702 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.43960 1.04401 5.60957 3.03432 0.04930 1.09861 0.40547 38 1.14973 0.65408 2.40744 2.61301 87 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 39 3.46258 0.46173 2.70789 1.30277 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 40 2.78773 1.22408 0.59526 2.37527 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 41 1.57356 0.98224 2.08689 1.22367 90 c - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 42 0.88552 1.95153 1.10372 2.17322 91 a - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 43 1.21435 2.16785 0.71887 2.28899 92 g - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 44 0.93518 1.24399 2.22750 1.55373 93 a - - , 1.38629 1.38629 1.38629 1.38629 0.28997 1.39411 5.60957 1.72093 0.19711 1.09861 0.40547 45 0.71148 4.96351 0.71943 4.19532 113 a - - , 1.38629 1.38629 1.38629 1.38629 0.14037 3.35676 2.34216 0.19839 1.71509 1.09861 0.40547 46 0.47522 2.73350 2.37503 1.51301 115 A - - , 1.38629 1.38629 1.38629 1.38629 0.00810 5.51255 5.51255 1.46634 0.26236 0.07345 2.64771 47 3.86002 0.23022 4.10459 1.78332 116 C - - , 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 48 2.79945 0.62392 1.09431 2.68026 117 C - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 49 3.31698 0.52302 2.35149 1.28815 118 C - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 50 1.47385 1.37631 0.91413 2.14058 119 g - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 51 1.97433 3.44683 0.26334 2.79981 120 G - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 52 3.92509 5.76837 0.02635 5.76438 121 G - - < 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 53 4.72324 3.04500 5.23356 0.06381 122 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 54 5.15242 4.19309 5.68580 0.02458 123 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 55 4.67939 0.04228 4.94455 3.68923 124 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 56 2.39028 4.77223 0.11488 4.77200 125 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 57 0.01735 5.76035 4.98915 4.92833 126 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 58 0.90503 3.28934 3.73752 0.62665 127 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02838 3.71657 5.60957 0.79948 0.59704 1.09861 0.40547 59 4.20046 3.59327 4.90338 0.05121 130 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 60 5.78667 0.03512 4.77176 3.77328 131 C - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 61 2.94362 0.30376 3.34190 1.74918 132 C - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 62 2.38194 0.91978 1.31747 1.42209 133 c - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 63 1.41809 2.52610 0.46872 2.95558 134 G - - > 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 64 2.95823 1.64338 0.60019 1.57960 135 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.33215 5.60957 0.19381 1.73620 1.09861 0.40547 65 2.32396 0.80232 2.83082 0.92921 137 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 66 1.56536 1.00661 1.11296 2.33359 138 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01564 5.60957 4.43466 1.46634 0.26236 1.09861 0.40547 67 0.87060 1.86773 1.16571 2.16172 139 a - - ) 1.38629 1.38629 1.38629 1.38629 0.00741 5.60134 5.60134 1.46634 0.26236 0.48100 0.96277 68 2.12083 1.05079 1.39098 1.26736 140 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 69 2.40145 1.53044 0.47524 2.64173 141 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 70 1.83008 1.72439 0.50211 2.88122 142 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00735 5.60957 5.60957 1.46634 0.26236 1.09861 0.40547 71 3.72742 0.19219 2.75937 2.43655 143 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03927 3.35676 5.60957 1.12745 0.39135 1.09861 0.40547 72 0.14746 3.22572 3.45606 2.72077 147 A - - : 1.38629 1.38629 1.38629 1.38629 0.00368 5.60590 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Ile ACC euk-Ile-r2-031616 STATES 236 NODES 63 CLEN 74 W 657 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 09:32:52 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ile-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Ile-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ile-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ile-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ile-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ile-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ile-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1157 EFFN 1157.000000 CKSUM 589094157 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.1343 0.71878 ECMLC 0.61281 -8.03427 1.88719 1600000 524413 0.002288 ECMGC 0.31388 -46.29389 -33.31049 1600000 23547 0.016987 ECMLI 0.61122 -7.44912 2.38497 1600000 489376 0.002452 ECMGI 0.33280 -42.77321 -30.51103 1600000 23679 0.016893 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 657 1357 -15.104 -16.350 -0.000 -12.803 IL 1 1 2 1 4 24 47 659 1360 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 49 660 1360 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 192 - A - - MR 3 2 3 5 5 30 54 658 1359 -5.608 -0.030 -14.968 -15.181 -16.072 1.953 -6.232 -3.371 -5.745 D 4 2 3 5 5 21 43 656 1356 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 27 53 660 1361 -0.607 -1.551 -11.473 -9.641 -10.747 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 188 G C - - MP 6 5 3 10 6 30 53 657 1358 -16.087 -16.026 -0.000 -14.802 -15.082 -15.477 -13.488 -5.297 -14.465 -1.283 -14.832 -5.044 -9.418 -14.739 -6.556 3.893 -4.918 -1.985 -1.530 -5.074 -11.712 -13.482 ML 7 5 3 10 6 23 45 655 1355 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 23 45 655 1355 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 20 41 650 1350 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 23 46 656 1357 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 23 47 656 1357 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 187 C G - - MP 12 11 6 16 6 28 51 655 1356 -16.087 -16.026 -0.001 -14.802 -11.745 -15.477 -10.210 -4.799 -10.105 -2.362 -3.012 -7.988 3.096 -10.200 -6.916 2.685 -4.255 -2.118 -1.694 -5.015 -5.351 -8.900 ML 13 11 6 16 6 22 45 653 1353 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 22 45 653 1353 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 19 41 649 1349 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 23 46 654 1355 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 46 654 1355 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 186 C G - - MP 18 17 6 22 6 26 49 653 1354 -6.244 -16.026 -0.019 -14.802 -15.082 -15.477 -10.557 -10.268 -5.517 -3.243 -4.630 -7.099 3.032 -4.670 -10.404 -0.615 -10.904 -7.844 2.728 -10.731 -1.647 -9.125 ML 19 17 6 22 6 22 44 651 1351 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 22 45 652 1352 -7.455 -6.184 -0.968 -6.162 -1.296 -4.376 1.014 -0.880 -0.625 -0.342 D 21 17 6 22 6 19 41 648 1348 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 25 48 652 1353 -6.693 -6.956 -0.035 -8.611 -9.388 -9.048 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 23 46 652 1353 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 185 C G - - MP 24 23 6 28 6 24 47 651 1352 -16.087 -16.026 -0.077 -4.972 -5.623 -15.477 -10.902 -10.639 -6.370 -0.674 -2.124 -11.582 3.711 -4.950 -10.722 -0.790 -3.043 -8.238 -1.357 -11.055 -0.148 -9.449 ML 25 23 6 28 6 21 43 649 1350 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 22 44 650 1351 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 19 41 647 1347 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 22 45 651 1351 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 23 45 651 1351 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 184 c g - - MP 30 29 6 34 6 23 45 649 1350 -7.038 -15.949 -0.011 -14.725 -15.005 -15.400 -4.412 -7.451 -3.406 -2.454 -5.077 -2.525 2.872 -5.735 -2.128 1.253 0.263 0.906 -0.040 -4.786 0.451 -3.876 ML 31 29 6 34 6 20 42 647 1348 -12.016 -12.362 -5.434 -1.630 -12.212 -0.615 -4.749 -4.677 0.312 1.423 MR 32 29 6 34 6 22 43 649 1350 -11.920 -10.649 -6.558 -10.627 -0.021 -8.841 -5.425 -7.127 1.984 -6.173 D 33 29 6 34 6 19 41 647 1347 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 22 44 648 1349 -5.889 -6.152 -0.061 -7.807 -8.583 -8.244 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 22 44 649 1349 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 183 g c - - MP 36 35 6 40 6 21 43 647 1348 -16.010 -15.950 -0.000 -14.726 -15.006 -15.401 -9.806 -5.195 -9.671 2.111 -7.083 -5.884 1.025 -7.437 -5.855 2.540 -4.660 -0.602 -0.253 -6.591 -5.223 1.121 ML 37 35 6 40 6 20 42 646 1347 -10.426 -10.773 -0.048 -5.181 -10.622 -8.152 -4.518 -6.093 1.969 -5.251 MR 38 35 6 40 6 21 42 648 1349 -11.920 -10.649 -6.558 -10.627 -0.021 -8.841 1.987 -6.763 -6.117 -6.302 D 39 35 6 40 6 19 40 646 1347 -14.578 -13.276 -9.073 -9.755 -9.773 -0.006 IL 40 40 5 40 6 20 42 647 1347 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 20 42 647 1347 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 182 g c - - MP 42 41 6 46 4 19 41 645 1346 -15.249 -15.456 -0.000 -13.870 -7.361 -2.891 -5.663 0.771 -6.609 -10.408 -2.748 -10.502 -10.251 2.971 -10.497 -1.888 2.535 -5.712 -4.737 -7.269 ML 43 41 6 46 4 18 40 645 1345 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 20 41 647 1348 -0.040 -8.969 -6.836 -5.897 -5.425 -7.127 1.984 -6.173 D 45 41 6 46 4 19 40 646 1347 -10.002 -0.032 -7.699 -5.954 IL 46 46 5 46 4 19 41 646 1347 -0.594 -8.844 -1.579 -11.330 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 41 646 1347 -0.599 -1.562 -9.672 0.000 0.000 0.000 0.000 [ MATL 9 ] 13 - U - - - ML 48 47 6 50 3 17 39 643 1344 -16.220 -0.000 -12.477 -6.720 -6.643 -6.253 1.988 D 49 47 6 50 3 15 37 642 1342 -6.174 -1.687 -0.566 IL 50 50 3 50 3 17 39 644 1344 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 14 - A - - - ML 51 50 3 53 2 16 38 642 1343 -6.237 -0.019 1.248 -6.899 0.684 -6.509 D 52 50 3 53 2 15 37 641 1342 -8.480 -0.004 IL 53 53 3 53 2 16 38 642 1343 -5.943 -0.024 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 15 37 641 1342 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 0 3 156 331 -16.220 -0.000 -14.874 IL 56 56 2 56 3 1 2 157 332 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 129 - A - - - ML 57 56 2 59 3 1 3 156 331 -6.888 -0.018 -8.034 1.490 -0.925 -2.078 -1.226 D 58 56 2 59 3 0 0 144 319 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 156 331 -4.245 -0.091 -6.945 0.000 0.000 0.000 0.000 [ MATL 46 ] 131 - G - - - ML 60 59 3 62 3 1 2 155 330 -3.002 -0.192 -14.868 -3.112 -1.131 1.560 -1.060 D 61 59 3 62 3 0 0 110 284 -9.721 -0.088 -4.112 IL 62 62 3 62 3 1 2 174 348 -0.152 -3.323 -13.937 0.000 0.000 0.000 0.000 [ MATL 47 ] 152 - G - - - ML 63 62 3 65 3 1 1 34 55 -7.138 -0.083 -4.352 -1.113 -5.748 1.759 -2.895 D 64 62 3 65 3 0 0 32 53 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 34 55 -4.033 -0.105 -6.734 0.000 0.000 0.000 0.000 [ MATL 48 ] 154 - U - - - ML 66 65 3 68 3 1 1 33 54 -16.147 -0.000 -14.801 -5.590 -2.584 -6.969 1.928 D 67 65 3 68 3 0 0 32 53 -13.296 -0.007 -7.688 IL 68 68 3 68 3 1 1 35 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 155 - C - - - ML 69 68 3 71 5 1 1 32 53 -15.153 -0.000 -14.968 -15.181 -16.072 -6.468 1.670 -6.197 -0.337 D 70 68 3 71 5 0 0 31 52 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 32 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 156 178 G C - - MP 72 71 3 76 6 2 2 31 52 -16.087 -6.189 -0.020 -14.802 -15.082 -15.477 -10.055 -6.097 -9.873 1.048 -4.831 -6.104 -2.599 -1.315 -10.312 3.292 -10.558 1.710 -6.336 -6.881 -2.849 -3.838 ML 73 71 3 76 6 1 1 30 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 31 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 28 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 33 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 34 55 -1.273 -0.784 -10.163 -8.331 -9.437 0.000 0.000 0.000 0.000 [ MATP 51 ] 157 175 u a - - MP 78 77 6 82 6 2 2 23 41 -7.102 -16.026 -0.011 -11.851 -15.082 -15.477 -6.480 -3.958 -5.344 -0.179 -4.340 -3.560 2.654 -3.493 -8.009 -0.958 -8.578 -1.460 2.779 -4.858 -1.708 -1.297 ML 79 77 6 82 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 22 41 -5.900 -6.163 -0.060 -7.819 -8.595 -8.255 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 159 174 G C - - MP 84 83 6 88 6 2 2 21 39 -16.086 -16.026 -0.000 -14.802 -15.082 -15.477 -5.981 -3.702 -9.873 0.601 -11.004 -7.178 -0.069 -6.231 -5.016 3.698 -5.854 -2.516 -2.854 -6.575 -4.122 -6.345 ML 85 83 6 88 6 1 1 24 43 -6.731 -7.077 -1.791 -0.643 -6.927 -4.456 0.022 -0.868 0.708 -0.315 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 160 173 G C - - MP 90 89 6 94 6 2 2 19 37 -16.086 -16.026 -0.000 -14.802 -15.082 -15.477 -13.768 -7.747 -15.249 1.937 -15.269 -4.293 -9.719 -15.228 -4.491 3.541 -4.914 -1.620 -10.066 -3.935 -12.089 -14.261 ML 91 89 6 94 6 1 1 23 42 -6.731 -7.077 -0.805 -1.486 -6.927 -4.456 0.022 -0.868 0.708 -0.315 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 161 172 G C - - MP 96 95 6 100 4 2 2 17 35 -15.310 -15.517 -0.000 -13.931 -14.058 -4.281 -16.585 -8.135 -15.670 -11.793 -9.946 -15.950 -4.833 3.970 -3.345 -3.848 -10.316 -3.927 -12.405 -15.795 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 162 - U - - - ML 102 101 6 104 3 1 1 14 32 -16.220 -0.000 -14.874 -6.337 -4.515 -10.347 1.979 D 103 101 6 104 3 0 0 18 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 163 - U - - - ML 105 104 3 107 3 1 1 12 31 -7.188 -0.010 -14.874 -12.392 -11.577 -6.269 1.995 D 106 104 3 107 3 0 0 15 33 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 13 31 -3.992 -0.109 -6.692 0.000 0.000 0.000 0.000 [ MATL 57 ] 165 - C - - - ML 108 107 3 110 3 1 1 11 30 -7.510 -0.008 -14.874 -6.181 1.935 -3.760 -3.493 D 109 107 3 110 3 0 0 15 34 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 13 31 -3.730 -0.131 -6.430 0.000 0.000 0.000 0.000 [ MATL 58 ] 167 - G - - - ML 111 110 3 113 3 1 1 10 28 -16.220 -0.000 -14.874 0.361 -6.265 1.422 -5.366 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 168 - A - - - ML 114 113 3 116 3 1 1 8 27 -16.220 -0.000 -14.874 1.988 -6.992 -6.440 -6.212 D 115 113 3 116 3 0 0 14 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 169 - u - - - ML 117 116 3 119 3 1 1 7 13 -7.201 -0.012 -9.098 0.222 -1.728 0.031 0.595 D 118 116 3 119 3 0 0 6 12 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 7 14 -3.981 -0.109 -6.682 0.000 0.000 0.000 0.000 [ MATL 61 ] 171 - C - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -2.246 1.504 -6.227 -0.088 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 2 17 618 1318 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 2 17 618 1318 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 25 43 -0.000 -14.214 -13.622 -14.262 [ MATP 15 ] 16 35 G C - - MP 127 126 1 131 6 2 7 25 43 -16.087 -16.026 -0.000 -14.802 -15.082 -15.477 -13.700 -4.517 -15.026 -1.972 -15.126 -4.343 -9.616 -15.130 -5.727 3.851 -4.139 -0.048 -3.014 -4.288 -11.963 -14.069 ML 128 126 1 131 6 1 2 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 2 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 2 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 17 34 C G - - MP 133 132 6 137 6 2 7 23 41 -16.087 -16.026 -0.000 -14.802 -15.082 -15.477 -13.137 -13.418 -12.456 -3.004 -5.107 -4.332 3.858 -4.997 -12.559 -9.625 -2.776 -11.820 -0.739 -12.972 -0.965 -11.361 ML 134 132 6 137 6 1 2 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 2 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 18 33 U A - - MP 139 138 6 143 6 2 6 21 39 -16.087 -16.026 -0.000 -14.802 -15.082 -15.477 -10.387 -4.683 -10.387 -4.039 -5.593 -11.230 1.501 -9.906 -5.836 1.707 -10.759 -4.358 3.271 -5.202 -5.861 -5.991 ML 140 138 6 143 6 1 2 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 2 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 2 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 19 32 C G - - MP 145 144 6 149 4 2 5 19 37 -15.310 -15.517 -0.000 -13.931 -1.008 -13.414 -3.326 -4.279 -1.178 -12.600 3.636 -6.288 0.917 -9.619 -4.999 -11.812 -3.921 -12.970 -2.259 -1.900 ML 146 144 6 149 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 2 27 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 2 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 151 150 6 153 3 1 3 16 35 -7.326 -0.009 -14.874 1.989 -6.441 -5.734 -11.280 D 152 150 6 153 3 0 0 19 38 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 2 17 35 -3.879 -0.118 -6.579 0.000 0.000 0.000 0.000 [ MATL 20 ] 22 - G - - - ML 154 153 3 156 3 1 2 15 34 -16.220 -0.000 -14.874 -0.425 -6.383 1.693 -6.663 D 155 153 3 156 3 0 0 20 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 2 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - U - - - ML 157 156 3 159 3 1 1 14 32 -16.220 -0.551 -1.655 -1.534 -0.895 -6.185 1.634 D 158 156 3 159 3 0 0 19 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - U - - - ML 160 159 3 162 3 1 1 13 31 -6.460 -0.017 -14.323 -4.243 -0.053 -5.567 1.567 D 161 159 3 162 3 0 0 12 30 -15.985 -0.001 -10.376 IL 162 162 3 162 3 1 1 14 32 -4.140 -0.098 -6.840 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - G - - - ML 163 162 3 165 3 1 1 12 30 -16.220 -0.000 -14.874 -5.868 -7.055 1.975 -4.525 D 164 162 3 165 3 0 0 17 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - G - - - ML 166 165 3 168 3 1 1 10 29 -16.220 -0.000 -14.874 -5.880 -6.568 1.985 -6.101 D 167 165 3 168 3 0 0 16 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - U - - - ML 169 168 3 171 3 1 1 9 27 -2.466 -0.326 -5.547 -2.686 -3.974 -5.829 1.912 D 170 168 3 171 3 0 0 9 27 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 8 27 -8.457 -0.005 -11.157 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - U - - - ML 172 171 3 174 3 1 1 7 26 -16.188 -0.000 -14.843 -2.701 -1.347 -2.100 1.687 D 173 171 3 174 3 0 0 9 28 -12.113 -0.016 -6.505 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.992 -11.972 -6.393 -6.557 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 601 1301 -16.220 -0.000 -14.874 IL 180 180 2 180 3 1 1 602 1303 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 36 - G - - - ML 181 180 2 183 5 1 1 601 1301 -7.019 -0.011 -14.968 -15.181 -16.072 -0.608 -5.421 1.453 -0.777 D 182 180 2 183 5 0 0 598 1298 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 601 1301 -5.163 -0.064 -6.842 -8.674 -7.948 0.000 0.000 0.000 0.000 [ MATP 31 ] 38 128 U A - - MP 184 183 3 188 6 2 2 600 1300 -16.087 -16.026 -0.000 -14.802 -12.106 -15.477 -6.338 -10.855 -6.339 -4.417 -6.627 -11.706 1.708 -4.657 -10.902 -3.416 -11.352 -8.472 3.525 -11.239 -0.023 -5.546 ML 185 183 3 188 6 1 1 597 1297 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 596 1297 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 590 1291 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 599 1299 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 599 1299 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 39 127 G C - - MP 190 189 6 194 6 2 2 598 1298 -16.086 -16.026 -0.000 -14.802 -15.082 -15.477 -1.934 -3.884 -9.862 -0.987 -5.811 -7.261 2.168 -10.494 -3.970 3.257 -5.421 -2.110 -1.791 -6.915 -1.122 -6.901 ML 191 189 6 194 6 1 1 595 1295 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 594 1294 -7.354 -6.083 -1.991 -6.061 -0.597 -4.274 -0.036 0.430 -0.735 0.106 D 193 189 6 194 6 0 0 589 1289 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 597 1297 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 597 1297 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 40 126 G C - - MP 196 195 6 200 6 2 2 596 1296 -16.086 -16.026 -0.001 -10.260 -15.082 -15.477 -10.055 -3.982 -9.873 0.705 -11.004 -4.785 -4.496 -10.563 -5.482 3.702 -10.558 -3.537 -0.507 -5.570 -1.471 -5.754 ML 197 195 6 200 6 1 1 593 1294 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 592 1293 -7.354 -6.083 -1.991 -6.061 -0.597 -4.274 -0.036 0.430 -0.735 0.106 D 199 195 6 200 6 0 0 587 1288 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 595 1295 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 595 1295 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 41 125 U G - - MP 202 201 6 206 6 2 2 594 1294 -16.085 -16.025 -0.000 -14.801 -15.081 -15.476 -10.394 -7.074 -5.244 -1.440 -6.782 -11.187 -0.782 -9.972 -5.209 1.777 -5.914 -7.557 -0.315 -5.413 3.409 -3.696 ML 203 201 6 206 6 1 1 592 1292 -7.458 -7.804 -2.518 -0.353 -7.653 -5.183 -0.708 -0.857 -1.385 1.294 MR 204 201 6 206 6 1 1 590 1291 -7.354 -6.083 -1.072 -6.061 -1.195 -4.274 0.073 -0.808 0.628 -0.267 D 205 201 6 206 6 0 0 586 1286 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 593 1293 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 593 1293 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 42 124 G C - - MP 208 207 6 212 4 2 2 592 1292 -15.309 -15.516 -0.000 -13.930 -10.054 -5.720 -9.872 2.321 -11.003 -7.155 -1.089 -5.853 -3.693 3.159 -6.366 -1.252 -2.521 -9.726 -0.915 -1.573 ML 209 207 6 212 4 1 1 590 1291 -4.740 -4.923 -0.234 -3.652 -0.642 -1.684 1.363 -1.073 MR 210 207 6 212 4 1 1 587 1287 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 585 1285 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 591 1292 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 591 1291 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 43 - C - - - ML 214 213 6 216 3 1 1 590 1290 -16.220 -0.000 -14.874 -3.048 1.923 -5.919 -3.813 D 215 213 6 216 3 0 0 582 1282 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 590 1290 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 44 - U - - - ML 217 216 3 219 3 1 1 589 1289 -16.220 -0.000 -14.874 -5.633 -5.405 -5.838 1.978 D 218 216 3 219 3 0 0 578 1279 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 588 1289 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 45 - u - - - ML 220 219 3 222 3 1 1 588 1288 -16.220 -0.000 -14.874 0.003 -0.003 -0.003 0.003 D 221 219 3 222 3 0 0 573 1273 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 587 1287 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 46 - u - - - ML 223 222 3 225 3 1 1 587 1287 -16.220 -0.000 -14.874 0.003 -0.003 -0.003 0.003 D 224 222 3 225 3 0 0 563 1264 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 585 1286 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 47 - g - - - ML 226 225 3 228 3 1 1 586 1286 -16.220 -0.000 -14.874 -0.010 -0.015 0.034 -0.010 D 227 225 3 228 3 0 0 544 1245 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 583 1283 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 48 - A - - - ML 229 228 3 231 3 1 1 585 1285 -1.155 -0.861 -14.874 1.707 -4.818 -0.516 -10.707 D 230 228 3 231 3 0 0 452 1152 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 614 1315 -0.038 -5.268 -17.729 0.000 0.000 0.000 0.000 [ MATL 42 ] 123 - A - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 1.877 -4.342 -6.193 -1.924 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Ile ACC euk-Ile-r2-031616 LENG 74 MAXL 647 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 09:32:52 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ile-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Ile-r2-031616.sto NSEQ 1157 EFFN 13.421772 CKSUM 589094157 STATS LOCAL MSV -8.2861 0.71878 STATS LOCAL VITERBI -9.0367 0.71878 STATS LOCAL FORWARD -3.5250 0.71878 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53682 1.38363 1.22571 1.42412 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 0.00000 * 1 2.47226 3.37301 0.18677 2.96263 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 2 2.49800 0.85758 1.02040 2.01657 2 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01700 4.78918 4.76356 1.46634 0.26236 1.09861 0.40547 3 2.78660 0.80268 2.30169 0.94122 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02786 3.95520 4.78896 0.71859 0.66833 1.08161 0.41408 4 2.47778 0.45959 2.25639 1.71590 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03386 4.78918 3.68981 1.46634 0.26236 1.09861 0.40547 5 1.94568 1.09774 1.27939 1.40536 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.04146 4.23508 3.64442 0.92628 0.50422 1.60989 0.22303 6 1.41696 1.94958 0.84920 1.67420 8 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01737 4.75455 4.75455 1.46634 0.26236 0.85954 0.55053 7 1.82958 2.69132 0.67419 1.33881 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03447 3.67227 4.77165 0.93137 0.50090 0.49919 0.93400 8 3.66693 3.55544 4.08478 0.07359 13 U - - , 1.38629 1.38629 1.38629 1.38629 0.01690 4.78918 4.77530 1.46634 0.26236 1.09861 0.40547 9 0.53478 4.04499 0.98149 3.81939 14 A - - , 1.38629 1.38629 1.38629 1.38629 0.02786 3.95530 4.78906 0.71859 0.66833 1.08938 0.41011 10 2.43238 3.23577 0.19451 3.00370 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 11 3.48812 0.20400 3.25693 2.15869 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 12 2.69237 1.41313 1.57922 0.72823 18 u - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 13 2.09058 0.63506 1.77549 1.73116 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 14 0.02944 4.79312 4.37802 4.80636 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02197 4.31174 4.78918 0.97465 0.47373 1.09861 0.40547 15 1.71064 3.87961 0.25938 3.60960 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 16 2.29663 1.98678 3.54732 0.30998 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32351 4.78918 1.31648 1.46634 0.26236 1.09861 0.40547 17 2.76528 1.53382 3.35301 0.37636 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03152 3.92238 4.48840 0.90391 0.51916 0.06022 2.83977 18 4.04921 4.96253 0.04130 4.13368 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 19 4.15528 5.03601 0.03293 4.58451 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 20 2.89757 3.14968 3.86204 0.12675 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.20111 1.85550 3.65742 0.10320 2.32222 1.09861 0.40547 21 2.63302 2.21194 2.72190 0.28382 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01708 4.77155 4.77155 1.46634 0.26236 0.49770 0.93631 22 0.02460 5.12645 4.58968 4.80298 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 23 1.53227 2.36404 0.58689 2.01097 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 24 0.78821 1.65037 1.31959 2.45205 33 a - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 25 2.52666 3.52670 0.16055 3.24417 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 26 3.25183 0.26324 3.04280 1.93074 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 27 1.72981 3.19441 0.45482 1.91645 36 G - - , 1.38629 1.38629 1.38629 1.38629 0.02319 4.22617 4.78918 0.90624 0.51759 1.09861 0.40547 28 3.08124 1.36462 2.80415 0.44932 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.01694 4.78918 4.76979 1.46634 0.26236 1.09861 0.40547 29 2.08821 1.49045 0.61524 2.20446 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78902 4.78902 1.46634 0.26236 1.10512 0.40223 30 1.86360 2.95875 0.35827 2.36321 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78902 4.78902 1.46634 0.26236 1.10512 0.40223 31 2.44329 1.92551 1.44746 0.63082 41 U - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78902 4.78902 1.46634 0.26236 1.08573 0.41197 32 1.32289 2.69030 0.55991 2.35899 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 33 3.36411 0.08995 4.32490 3.26502 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 34 3.49681 3.38709 3.94529 0.08713 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 35 1.30599 1.47503 1.48789 1.29290 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 36 1.30599 1.47503 1.48789 1.29290 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 37 1.31095 1.48148 1.46928 1.29813 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 38 0.24877 3.70700 1.74492 3.86176 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.48487 0.97843 4.78918 3.64121 0.02657 1.09861 0.40547 39 0.14106 3.36145 3.68433 2.63435 123 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01743 4.78918 4.71487 1.46634 0.26236 1.09861 0.40547 40 2.91760 0.63849 2.34265 1.13390 124 C - - > 1.38629 1.38629 1.38629 1.38629 0.01679 4.78854 4.78854 1.46634 0.26236 1.12400 0.39301 41 2.05251 1.52072 0.60605 2.22999 125 G - - > 1.38629 1.38629 1.38629 1.38629 0.01679 4.78854 4.78854 1.46634 0.26236 1.04969 0.43085 42 2.69215 0.39737 2.61531 1.67648 126 C - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 43 2.43953 0.67610 1.36285 1.90871 127 C - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 44 0.55466 2.97407 1.15478 2.82155 128 A - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 45 0.47563 1.96413 2.42304 1.89995 129 A - - , 1.38629 1.38629 1.38629 1.38629 0.02699 4.18529 4.47292 0.87521 0.53918 1.09861 0.40547 46 2.46309 2.20603 0.39187 2.04872 131 G - - , 1.38629 1.38629 1.38629 1.38629 0.12638 2.20386 4.78608 2.28175 0.10770 0.89924 0.52236 47 2.04477 3.55159 0.24170 2.87140 152 G - - , 1.38629 1.38629 1.38629 1.38629 0.06452 4.26031 3.02892 0.93295 0.49987 1.09861 0.40547 48 3.42673 2.81458 3.96309 0.11814 154 U - - , 1.38629 1.38629 1.38629 1.38629 0.01748 4.74831 4.74831 1.46634 0.26236 0.29565 1.36276 49 3.30331 0.29343 3.91945 1.62106 155 C - - , 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 50 1.78282 2.65781 0.36167 2.72995 156 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 51 2.04395 1.07187 1.99602 0.93588 157 u - - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.24816 4.78918 0.92336 0.50614 1.09861 0.40547 52 1.88085 2.50228 0.35523 2.73914 159 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 53 1.50041 3.04482 0.39489 2.88947 160 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 54 3.57566 4.55724 0.05386 4.27254 161 G - - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 55 3.79589 3.46174 4.39967 0.06841 162 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 56 3.94059 3.79951 4.25696 0.05761 163 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02249 4.27449 4.78918 0.94428 0.49259 1.09861 0.40547 57 4.06875 0.07847 3.86234 3.28743 165 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02134 4.35848 4.78918 1.01413 0.45055 1.09861 0.40547 58 1.16554 3.73013 0.46068 3.39912 167 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 59 0.02998 4.80826 4.47467 4.60722 168 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 60 1.21359 2.11666 1.46531 1.04574 169 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02394 4.27791 4.62685 0.94702 0.49085 1.09861 0.40547 61 2.47369 0.44704 3.62862 1.38768 171 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01680 4.78771 4.78771 1.46634 0.26236 0.99337 0.46256 62 4.49483 0.06731 4.13739 3.27116 172 C - - > 1.38629 1.38629 1.38629 1.38629 0.01698 4.78918 4.76616 1.46634 0.26236 1.09861 0.40547 63 3.16253 0.44924 2.86933 1.33625 173 C - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78899 4.78899 1.46634 0.26236 1.10635 0.40162 64 2.99606 0.40167 2.36186 1.67895 174 C - - > 1.38629 1.38629 1.38629 1.38629 0.01678 4.78899 4.78899 1.46634 0.26236 1.08332 0.41320 65 1.07972 2.17981 0.98163 1.75708 175 g - - > 1.38629 1.38629 1.38629 1.38629 0.02829 3.93336 4.78918 0.93181 0.50061 1.09861 0.40547 66 3.08537 0.57922 2.65344 1.12842 178 C - - > 1.38629 1.38629 1.38629 1.38629 0.03461 3.66122 4.78918 0.92449 0.50540 1.09861 0.40547 67 1.40885 0.73914 2.46592 1.64444 182 c - - ) 1.38629 1.38629 1.38629 1.38629 0.04332 4.78918 3.37925 1.46634 0.26236 1.09861 0.40547 68 2.26113 0.96944 1.83001 1.03265 183 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01766 4.76309 4.71391 1.46634 0.26236 1.80758 0.17919 69 1.72651 1.72151 0.83459 1.56424 184 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01723 4.76266 4.76266 1.46634 0.26236 0.39365 1.12267 70 2.05371 2.44148 0.38025 2.29247 185 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 71 1.03960 2.43478 0.73268 2.54891 186 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 72 2.19843 1.09200 0.81207 2.21145 187 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01678 4.78918 4.78918 1.46634 0.26236 1.09861 0.40547 73 3.16732 0.22023 3.19132 2.16774 188 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03397 3.68556 4.78918 1.19571 0.36024 1.09861 0.40547 74 0.06750 4.19186 3.41443 4.05943 192 A - - : 1.38629 1.38629 1.38629 1.38629 0.00842 4.78083 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-iMet ACC euk-iMet-r2-031616 STATES 230 NODES 61 CLEN 72 W 90 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 11:18:14 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-iMet-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-iMet-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-iMet-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-iMet-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 446 EFFN 446.000000 CKSUM 828105878 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7944 0.71894 ECMLC 0.66300 -7.62753 1.73374 1600000 595166 0.002016 ECMGC 0.37997 -55.47138 -42.02464 1600000 66227 0.006040 ECMLI 0.64665 -7.41346 2.02695 1600000 537512 0.002233 ECMGI 0.39435 -50.94901 -38.14534 1600000 62356 0.006415 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 90 116 -13.733 -14.978 -0.001 -11.432 IL 1 1 2 1 4 15 40 92 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 41 92 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - - MR 3 2 3 5 5 22 50 90 116 -13.783 -0.000 -13.598 -13.810 -14.702 1.976 -7.972 -4.929 -5.107 D 4 2 3 5 5 11 36 89 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 40 91 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 A U - - MP 6 5 3 10 6 21 49 89 115 -14.726 -14.665 -0.010 -13.442 -7.190 -14.116 -3.124 -6.512 -6.644 3.942 -13.094 -14.249 -8.551 -2.529 -10.512 -3.005 -11.182 -2.414 -8.476 -12.258 -10.382 -9.551 ML 7 5 3 10 6 13 38 88 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 38 88 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 9 34 85 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 39 89 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 40 89 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 G C - - MP 12 11 6 16 6 20 47 87 113 -14.716 -14.655 -0.000 -13.432 -13.712 -14.107 -12.636 -3.382 -14.903 -6.743 -14.259 -10.435 -8.563 -14.401 -5.280 3.844 -2.685 -2.027 0.056 -3.974 -11.009 -13.990 ML 13 11 6 16 6 13 38 86 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 40 86 112 -9.264 -7.993 -0.217 -7.971 -3.105 -6.184 1.842 -3.138 -2.696 -2.760 D 15 11 6 16 6 9 34 83 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 39 87 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 39 87 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 C G - - MP 18 17 6 22 6 19 46 85 111 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -11.767 -12.049 -3.625 -8.286 -3.421 -11.229 3.958 -10.351 -11.189 -8.258 -11.308 -10.454 -3.754 -11.601 -2.310 -9.990 ML 19 17 6 22 6 12 37 84 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 37 83 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 8 34 81 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 38 85 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 39 85 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 A U - - MP 24 23 6 28 6 17 44 83 109 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -3.384 -3.228 -3.704 3.741 -13.046 -14.090 -8.488 -10.983 -10.503 0.924 -11.168 -4.100 -1.561 -12.192 -10.326 -4.330 ML 25 23 6 28 6 12 37 82 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 37 82 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 8 34 79 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 38 83 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 38 83 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 G C - - MP 30 29 6 34 6 15 42 81 107 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -8.772 -4.818 -8.594 0.098 -9.723 -9.165 -0.019 -9.282 -9.011 3.677 -9.257 -2.853 -0.150 -4.267 -6.796 -7.559 ML 31 29 6 34 6 11 37 80 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 36 80 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 8 34 77 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 38 81 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 12 38 81 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 90 A U - - MP 36 35 6 40 6 13 40 79 105 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -4.884 -4.559 -6.153 3.570 -8.121 -10.006 1.272 -5.500 -8.991 -0.896 -5.387 -2.575 -0.314 -9.323 -5.592 -4.908 ML 37 35 6 40 6 10 36 78 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 36 78 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 7 34 76 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 11 37 79 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 11 37 79 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 89 G C - - MP 42 41 6 46 4 11 38 77 103 -13.938 -14.145 -0.000 -12.559 -10.094 -4.776 -10.056 -1.020 -11.154 -9.965 -2.538 -10.669 -5.237 3.839 -10.115 -1.962 -0.536 -9.601 -8.209 -9.002 ML 43 41 6 46 4 9 35 77 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 8 35 77 102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 7 34 75 101 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 10 36 78 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 10 36 78 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 9 36 75 101 -14.848 -0.000 -13.502 -12.062 -10.722 -13.582 2.000 D 49 47 6 50 3 7 34 74 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 9 35 77 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 8 35 74 100 -15.502 -0.000 -2.015 -10.488 1.899 -5.568 D 52 50 3 53 2 7 34 73 99 -8.445 -0.004 IL 53 53 3 53 2 8 35 75 101 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 7 34 73 99 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 1 40 66 -14.848 -0.000 -13.502 IL 56 56 2 56 3 1 1 42 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - A - - - ML 57 56 2 59 3 1 1 40 66 -14.848 -0.002 -9.344 1.971 -4.914 -5.631 -5.273 D 58 56 2 59 3 0 0 38 64 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 41 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 60 59 3 62 3 1 1 39 65 -5.188 -0.040 -13.500 -2.217 -8.844 1.786 -1.583 D 61 59 3 62 3 0 0 36 62 -7.545 -0.447 -1.936 IL 62 62 3 62 3 1 1 43 69 -1.024 -0.987 -8.143 0.000 0.000 0.000 0.000 [ MATL 45 ] 67 - G - - - ML 63 62 3 65 3 1 1 29 48 -14.848 -0.000 -13.502 -4.956 -5.265 1.973 -5.866 D 64 62 3 65 3 0 0 32 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 68 - U - - - ML 66 65 3 68 3 1 1 28 46 -14.848 -0.000 -13.502 -3.141 -3.859 -5.430 1.924 D 67 65 3 68 3 0 0 30 49 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 69 - C - - - ML 69 68 3 71 5 1 1 27 45 -13.783 -0.000 -13.598 -13.810 -14.702 -4.467 1.912 -4.474 -2.777 D 70 68 3 71 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 70 88 G C - - MP 72 71 3 76 6 2 2 26 44 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -8.712 -2.163 -8.531 -0.367 -9.650 -9.128 2.255 -9.216 -4.103 3.164 -9.214 -0.011 -3.019 -8.387 -3.852 -7.495 ML 73 71 3 76 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 71 87 A U - - MP 78 77 6 82 6 2 2 24 42 -6.225 -14.665 -0.020 -13.442 -13.721 -14.116 -5.351 -7.924 -8.790 3.147 -8.523 -9.492 1.614 -8.856 -8.945 1.134 -9.329 -0.034 -0.490 -8.781 -3.474 -3.917 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 23 42 -5.472 -5.735 -0.082 -7.390 -8.166 -7.827 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 73 86 U A - - MP 84 83 6 88 6 2 2 22 40 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -5.213 -4.010 -9.867 1.579 -8.769 -10.690 -0.300 -9.387 -9.726 -5.313 -10.199 -3.439 3.566 -3.358 -5.062 -6.083 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 74 85 G C - - MP 90 89 6 94 6 2 2 20 38 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -8.952 -5.612 -8.789 -1.063 -9.944 -9.408 -0.450 -9.448 -9.167 3.831 -9.436 -2.125 -2.336 -8.668 -7.022 -3.570 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 75 84 G C - - MP 96 95 6 100 4 2 2 18 36 -13.938 -14.145 -0.000 -12.559 -12.688 -3.623 -15.161 -6.771 -14.305 -10.436 -8.586 -14.551 -10.653 3.966 -10.842 -2.642 -8.954 -3.087 -11.043 -14.336 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 76 - A - - - ML 102 101 6 104 3 1 1 15 33 -14.848 -0.000 -13.502 1.976 -4.812 -9.378 -5.171 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 77 - U - - - ML 105 104 3 107 3 1 1 14 32 -14.848 -0.000 -13.502 -10.958 -5.072 -11.969 1.989 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 78 - C - - - ML 108 107 3 110 3 1 1 12 31 -14.848 -0.000 -13.502 -5.332 1.943 -4.266 -3.661 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 79 - G - - - ML 111 110 3 113 3 1 1 11 29 -14.848 -0.000 -13.502 -1.851 -10.409 1.888 -5.564 D 112 110 3 113 3 0 0 15 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 80 - A - - - ML 114 113 3 116 3 1 1 9 28 -6.183 -0.020 -13.502 1.989 -5.113 -9.996 -10.037 D 115 113 3 116 3 0 0 13 31 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 11 29 -3.694 -0.135 -6.394 0.000 0.000 0.000 0.000 [ MATL 58 ] 82 - A - - - ML 117 116 3 119 3 1 1 8 27 -14.848 -0.000 -13.502 1.957 -5.366 -5.745 -3.723 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 83 - A - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 1.981 -10.226 -4.991 -5.614 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 43 61 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 0 15 43 61 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 24 42 -0.001 -12.849 -12.256 -12.896 [ MATP 15 ] 10 26 G U - - MP 127 126 1 131 6 2 2 24 42 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -10.757 -9.417 -10.953 -0.958 -13.093 -14.246 -8.551 -10.995 -2.822 1.445 -11.182 3.656 -8.476 -12.257 -10.382 -9.551 ML 128 126 1 131 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G - - MP 133 132 6 137 6 2 2 22 40 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -11.767 -12.049 -11.085 -8.286 -2.195 -11.229 3.881 -10.351 -11.189 -8.258 -3.626 -10.454 -0.693 -11.601 -1.551 -9.990 ML 134 132 6 137 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 G C - - MP 139 138 6 143 6 2 2 20 38 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -12.605 -2.213 -14.707 -6.739 -14.263 -10.464 -8.584 -14.257 -4.788 3.893 -3.748 -1.585 -1.088 -10.925 -11.023 -13.695 ML 140 138 6 143 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 C G - - MP 145 144 6 149 4 2 2 18 36 -13.938 -14.145 -0.000 -12.559 -11.767 -3.631 -2.825 -8.286 -3.270 -4.428 3.943 -10.351 -11.189 -8.258 -11.308 -10.454 -6.168 -11.601 -2.133 -9.990 ML 146 144 6 149 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 1 15 33 -14.848 -0.000 -13.502 1.988 -10.691 -10.035 -4.948 D 152 150 6 153 3 0 0 19 37 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 154 153 3 156 3 1 1 13 32 -14.848 -0.000 -13.502 -3.422 -5.565 1.958 -9.914 D 155 153 3 156 3 0 0 17 36 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 157 156 3 159 3 1 1 12 31 -6.065 -0.022 -13.502 -3.164 1.504 -3.354 -0.067 D 158 156 3 159 3 0 0 15 34 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 13 31 -3.788 -0.126 -6.488 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - G - - - ML 160 159 3 162 3 1 1 11 29 -14.848 -0.000 -13.502 -4.228 -11.155 1.980 -10.131 D 161 159 3 162 3 0 0 16 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - - - ML 163 162 3 165 3 1 1 9 28 -14.848 -0.000 -13.502 -9.383 -11.137 1.989 -5.094 D 164 162 3 165 3 0 0 14 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 166 165 3 168 3 1 1 6 12 -5.033 -0.045 -13.502 1.855 -3.571 -2.216 -3.585 D 167 165 3 168 3 0 0 5 11 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 6 12 -4.670 -0.067 -7.370 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.988 -10.731 -5.017 -10.117 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 0 27 45 -6.208 -0.020 -13.502 IL 174 174 2 174 3 1 1 28 47 -3.674 -0.137 -6.374 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 175 174 2 177 5 1 1 27 45 -5.670 -0.029 -13.598 -13.810 -14.702 -9.344 -5.429 1.977 -4.723 D 176 174 2 177 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 27 45 -5.145 -0.064 -6.824 -8.656 -7.930 0.000 0.000 0.000 0.000 [ MATP 29 ] 30 46 C G - - MP 178 177 3 182 6 2 2 26 44 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -10.379 -4.377 -10.169 -2.926 -8.844 -6.011 3.823 -9.597 -10.107 0.168 -10.482 -3.706 -2.832 -10.480 -1.750 -8.858 ML 179 177 3 182 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 45 U A - - MP 184 183 6 188 6 2 2 24 42 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -11.453 -11.574 -10.902 0.646 -4.812 -11.138 0.340 -10.206 -10.964 -1.051 -11.148 -9.657 3.658 -11.362 -5.483 -9.751 ML 185 183 6 188 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 44 G C - - MP 190 189 6 194 6 2 2 22 40 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -12.689 -3.719 -15.159 -1.842 -14.291 -3.983 -8.575 -14.568 -3.575 3.892 -10.839 -0.896 -8.944 -3.164 -11.029 -14.363 ML 191 189 6 194 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 43 G C - - MP 196 195 6 200 6 2 2 20 38 -14.726 -14.665 -0.000 -13.442 -13.721 -14.116 -12.683 -2.422 -15.131 -6.769 -14.302 -10.438 -8.586 -14.533 -3.746 3.910 -3.923 -0.883 -8.954 -3.642 -11.042 -14.292 ML 197 195 6 200 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 42 G C - - MP 202 201 6 206 4 2 2 18 36 -13.938 -14.145 -0.000 -12.559 -12.706 -2.502 -15.278 -6.778 -14.313 -1.328 -8.586 -14.622 -10.654 3.934 -10.841 -3.056 -8.957 -10.903 -11.046 -14.518 ML 203 201 6 206 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - C - - - ML 208 207 6 210 3 1 1 15 34 -14.848 -0.000 -13.502 -5.511 1.983 -5.477 -8.416 D 209 207 6 210 3 0 0 19 37 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 211 210 3 213 3 1 1 14 32 -14.848 -0.000 -13.502 -10.823 1.643 -11.640 -0.193 D 212 210 3 213 3 0 0 18 36 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - u - - - ML 214 213 3 216 3 1 1 13 31 -14.848 -0.000 -13.502 0.007 -0.007 -0.007 0.008 D 215 213 3 216 3 0 0 17 35 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - u - - - ML 217 216 3 219 3 1 1 11 30 -14.848 -0.000 -13.502 0.007 -0.007 -0.007 0.008 D 218 216 3 219 3 0 0 16 34 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - u - - - ML 220 219 3 222 3 1 1 10 28 -14.848 -0.000 -13.502 0.007 -0.007 -0.007 0.008 D 221 219 3 222 3 0 0 15 33 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 223 222 3 225 3 1 1 8 27 -14.848 -0.000 -13.502 1.985 -10.712 -4.683 -10.108 D 224 222 3 225 3 0 0 13 32 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 1.980 -5.336 -5.164 -9.590 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-iMet ACC euk-iMet-r2-031616 LENG 72 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 11:18:14 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-iMet-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-iMet-r2-031616.sto NSEQ 446 EFFN 3.460556 CKSUM 828105878 STATS LOCAL MSV -8.5860 0.71894 STATS LOCAL VITERBI -9.0842 0.71894 STATS LOCAL FORWARD -3.7058 0.71894 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39334 1.37527 1.15641 1.69080 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 0.00000 * 1 0.15686 3.40875 2.57553 3.32483 1 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03673 4.14856 3.89814 1.46634 0.26236 1.09861 0.40547 2 1.94859 2.47671 0.41395 2.18505 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03223 4.14406 4.14406 1.46634 0.26236 0.93881 0.49609 3 3.56668 0.15202 3.41832 2.52563 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 4 0.76350 2.26186 1.19160 2.07087 4 a - - ( 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 5 1.80041 2.18509 0.51192 2.09590 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 6 1.08726 1.55478 1.37488 1.61568 6 a - - ( 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 7 2.03813 2.64890 0.34219 2.42153 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 8 3.06183 2.95137 3.59370 0.13532 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 9 2.30697 3.44908 0.19808 3.02914 9 G - - , 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 10 1.92520 2.99602 0.29445 2.82641 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 11 3.07773 0.28066 2.82788 1.96958 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 12 2.10283 2.75355 0.31003 2.51623 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 13 3.67596 0.11167 3.51800 2.98226 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 14 0.11115 3.54927 3.28833 3.24077 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 15 2.64996 3.60139 0.14616 3.26901 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 16 1.97991 0.68460 2.52548 1.28155 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04222 3.66698 4.14856 0.97123 0.47581 1.09861 0.40547 17 2.92400 3.94648 0.10796 3.53047 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 18 3.07131 3.96477 0.10157 3.46578 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 19 0.31577 2.60373 2.30570 2.33216 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05295 3.33013 4.14856 0.72816 0.65932 1.09861 0.40547 20 0.11161 3.57804 3.16550 3.33860 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 21 3.19680 3.65618 0.10086 3.53287 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 22 2.72205 0.36449 2.55074 1.82211 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 23 2.20231 3.01843 0.24558 2.84180 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 24 2.92725 1.33143 2.78592 0.47693 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.04126 3.70381 4.14856 1.00210 0.45746 1.09861 0.40547 25 2.88758 3.65590 0.12834 3.24674 28 G - - , 1.38629 1.38629 1.38629 1.38629 0.04544 3.55321 4.14856 0.88160 0.53464 1.09861 0.40547 26 2.34276 0.59428 1.90134 1.59649 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 27 2.00373 1.40080 1.92263 0.74962 31 u - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 28 2.11319 2.76031 0.29690 2.62063 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 29 2.15164 2.81571 0.28219 2.66337 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 30 2.50850 3.06531 0.18921 3.11540 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 31 2.99091 0.16926 3.50760 2.58363 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 32 2.41271 0.48457 3.02159 1.40348 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 33 1.26353 1.53190 1.55289 1.23931 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 34 1.26353 1.53190 1.55289 1.23931 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 35 1.26353 1.53190 1.55289 1.23931 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 36 0.11586 3.54936 3.12074 3.30949 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 37 0.13027 3.37374 3.07134 3.18160 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 38 3.33827 0.20862 3.05883 2.24569 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 39 2.90742 0.33630 2.61717 1.84538 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 40 2.87232 0.35048 2.59364 1.80584 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 41 0.84574 2.08106 1.25595 1.82539 45 a - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 42 1.85538 2.04666 0.52210 2.11056 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 43 0.14430 3.25800 3.03777 3.03730 47 A - - , 1.38629 1.38629 1.38629 1.38629 0.03307 4.14856 4.09001 1.46634 0.26236 1.09861 0.40547 44 2.02409 2.86179 0.35834 2.19033 48 G - - , 1.38629 1.38629 1.38629 1.38629 0.05083 3.38861 4.14761 1.03190 0.44057 1.05996 0.42536 45 2.80116 3.63408 0.13325 3.28050 67 G - - , 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 46 2.30324 2.36711 2.87775 0.28761 68 U - - , 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 47 2.61528 0.26730 3.15594 2.13019 69 C - - , 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 48 1.79125 1.59830 0.72315 1.92560 70 g - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 49 1.26970 1.55258 1.15311 1.65165 71 g - - < 1.38629 1.38629 1.38629 1.38629 0.04126 3.70381 4.14856 1.00210 0.45746 1.09861 0.40547 50 1.72204 1.45139 1.72827 0.89290 73 u - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 51 1.84181 2.29144 0.45229 2.26164 74 G - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 52 2.54583 3.28817 0.17399 3.12431 75 G - - < 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 53 0.13642 3.28216 3.14122 3.06304 76 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 54 2.93950 2.78274 3.46504 0.15786 77 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 55 2.76036 0.22696 3.24145 2.29590 78 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 56 2.24547 3.40510 0.21007 2.98793 79 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 57 0.11559 3.44341 3.24365 3.26525 80 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04142 3.69747 4.14856 0.99671 0.46059 1.09861 0.40547 58 0.16445 3.15609 2.97456 2.84775 82 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 59 0.12393 3.47444 3.10456 3.20072 83 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 60 3.39239 0.20260 3.11728 2.24917 84 C - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 61 2.52270 0.52728 2.12648 1.55926 85 C - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 62 1.01615 1.88570 1.28823 1.55811 86 a - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 63 1.87848 1.32128 1.40464 1.09383 87 u - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 64 2.16306 0.83435 1.47335 1.50637 88 c - - > 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 65 2.62233 0.39969 2.47295 1.75733 89 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 66 1.82862 1.52549 1.40489 0.97696 90 u - - ) 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 67 2.32376 0.58269 2.02410 1.55312 91 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 68 2.28077 1.32250 2.06102 0.68517 92 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 69 2.79218 3.57815 0.13088 3.39742 93 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 70 2.39611 0.48151 2.26671 1.67436 94 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 71 3.52719 2.84303 3.29445 0.13322 95 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03208 4.14856 4.14856 1.46634 0.26236 1.09861 0.40547 72 0.13117 3.41445 3.06874 3.13364 96 A - - : 1.38629 1.38629 1.38629 1.38629 0.01617 4.13265 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Leu ACC euk-Leu-r2-031616 STATES 271 NODES 73 CLEN 84 W 553 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 10:07:09 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Leu-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Leu-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Leu-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Leu-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Leu-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Leu-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Leu-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2096 EFFN 2096.000000 CKSUM 1281515033 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9678 0.71866 ECMLC 0.72820 -6.77180 1.64139 1600000 549396 0.002184 ECMGC 0.33319 -46.95719 -34.61480 1600000 24437 0.016369 ECMLI 0.74892 -6.08051 1.96797 1600000 497707 0.002411 ECMGI 0.36175 -42.60012 -31.19806 1600000 24741 0.016167 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 553 1126 -15.960 -17.206 -0.000 -12.395 IL 1 1 2 1 4 26 51 555 1128 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 28 53 555 1128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 194 - A - - MR 3 2 3 5 5 31 56 554 1127 -6.037 -0.022 -15.824 -13.130 -16.928 1.974 -7.233 -4.135 -6.785 D 4 2 3 5 5 24 47 550 1123 -5.687 -1.042 -3.314 -4.745 -1.485 IR 5 5 3 5 5 31 56 556 1129 -0.602 -1.559 -11.892 -10.060 -11.166 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 190 G C - - MP 6 5 3 10 6 30 54 553 1126 -16.940 -5.048 -0.044 -15.655 -15.935 -16.330 -11.128 -4.622 -10.961 1.082 -12.089 -4.699 -7.149 -11.643 -5.377 3.748 -5.191 -3.128 -4.102 -2.962 -9.161 -6.729 ML 7 5 3 10 6 26 50 551 1124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 26 50 551 1124 -7.314 -6.043 -1.117 -6.021 -1.155 -4.235 -0.002 0.376 -0.697 0.120 D 9 5 3 10 6 23 45 545 1118 -9.552 -8.250 -4.047 -4.729 -4.747 -0.218 IL 10 10 5 10 6 26 50 551 1124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 24 47 546 1119 -0.782 -7.140 -12.563 -10.731 -1.284 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 186 c g - - MP 12 11 6 16 6 31 54 552 1125 -16.895 -5.117 -0.043 -15.611 -11.544 -16.286 -6.090 -10.889 -11.191 -0.757 -7.225 -12.034 2.290 -7.516 -7.769 1.583 -6.560 1.365 2.260 -11.372 -3.211 -8.376 ML 13 11 6 16 6 26 50 549 1122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 26 50 549 1122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 23 45 544 1117 -15.932 -14.630 -10.427 -11.109 -11.127 -0.002 IL 16 16 5 16 6 27 51 551 1124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 30 54 552 1125 -0.594 -1.571 -12.762 -10.930 -12.036 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 182 C G - - MP 18 17 6 22 6 29 52 549 1122 -16.895 -16.834 -0.023 -15.611 -15.891 -6.014 -11.172 -10.880 -5.583 0.249 -4.985 -7.076 3.359 -7.201 -11.035 -0.604 -4.002 -5.753 1.083 -7.560 0.662 -4.646 ML 19 17 6 22 6 26 49 547 1120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 26 49 548 1121 -7.846 -6.575 -0.673 -6.553 -1.687 -4.767 1.296 -1.243 -0.980 -0.701 D 21 17 6 22 6 23 45 544 1117 -15.932 -14.630 -10.427 -11.109 -11.127 -0.002 IL 22 22 5 22 6 27 50 549 1122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 27 50 548 1121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 181 A U - - MP 24 23 6 28 6 29 50 547 1120 -16.873 -16.812 -0.000 -12.846 -15.869 -16.264 -4.244 -4.963 -11.058 3.376 -11.828 -11.752 1.105 -7.099 -11.367 1.340 -11.681 -4.630 -0.409 -10.996 -9.017 -4.394 ML 25 23 6 28 6 25 48 546 1119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 25 47 545 1118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 23 45 544 1117 -16.507 -15.206 -1.855 -11.685 -11.702 -0.468 IL 28 28 5 28 6 26 49 547 1120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 26 49 546 1119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 180 G C - - MP 30 29 6 34 6 27 48 545 1118 -16.892 -16.831 -0.000 -15.607 -12.807 -16.282 -10.858 -4.868 -10.676 1.459 -11.806 -5.235 1.146 -11.366 -4.590 3.323 -8.851 -1.559 -0.786 -10.530 -7.453 -9.642 ML 31 29 6 34 6 24 46 544 1117 -6.666 -7.012 -0.855 -1.421 -6.862 -4.392 0.071 -0.810 0.631 -0.268 MR 32 29 6 34 6 23 46 544 1117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 22 45 543 1116 -16.041 -14.740 -10.537 -11.219 -11.236 -0.002 IL 34 34 5 34 6 25 47 545 1118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 25 47 545 1118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 179 g c - - MP 36 35 6 40 6 25 46 543 1116 -16.892 -16.831 -0.000 -15.607 -15.887 -16.282 -10.873 -9.541 -6.490 -0.975 -7.222 -11.302 0.868 -11.327 -11.112 2.737 -11.371 2.282 -1.687 -6.759 0.829 -5.829 ML 37 35 6 40 6 23 45 542 1115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 22 44 542 1115 -7.381 -6.110 -1.043 -6.088 -1.222 -4.302 -0.085 -0.444 -0.694 0.769 D 39 35 6 40 6 22 45 543 1116 -16.041 -14.740 -10.537 -11.219 -11.236 -0.002 IL 40 40 5 40 6 23 46 543 1116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 23 45 543 1116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 178 A U - - MP 42 41 6 46 4 23 44 541 1114 -16.118 -16.325 -0.000 -14.739 -8.775 -5.590 -8.564 3.319 -11.797 -7.299 -1.111 -11.364 -11.114 1.776 -7.753 -3.296 0.885 -10.532 -5.973 -2.952 ML 43 41 6 46 4 21 43 541 1114 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 20 42 540 1113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 22 45 543 1116 -11.464 -0.021 -6.915 -7.416 IL 46 46 5 46 4 22 44 542 1115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 23 45 543 1116 -0.465 -1.863 -11.412 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 21 42 539 1112 -17.076 -0.000 -15.730 -7.015 -7.059 -6.982 1.992 D 49 47 6 50 3 19 41 538 1111 -6.174 -1.687 -0.566 IL 50 50 3 50 3 21 43 540 1113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 20 41 538 1111 -17.732 -0.000 -5.274 -7.054 1.982 -5.895 D 52 50 3 53 2 19 40 537 1110 -8.445 -0.004 IL 53 53 3 53 2 20 42 539 1112 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 167 19 40 537 1110 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 2 18 506 1079 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 110 2 18 506 1079 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 2 25 43 -0.001 -11.664 -14.476 -15.116 [ MATP 15 ] 10 32 G C - - MP 58 57 1 62 6 2 4 25 43 -6.939 -7.242 -0.022 -15.655 -15.935 -16.330 -11.025 -5.816 -10.851 -3.451 -11.978 -7.137 -1.596 -5.540 -6.939 3.891 -6.733 -1.087 -2.319 -7.612 -9.050 -9.816 ML 59 57 1 62 6 1 1 26 44 -7.133 -7.480 -0.564 -1.888 -7.329 -4.859 -0.412 0.909 -1.148 -0.122 MR 60 57 1 62 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 24 42 -6.843 -7.106 -0.031 -8.761 -9.537 -9.198 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 24 42 -5.723 -0.043 -9.235 -7.402 -8.508 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 C G - - MP 64 63 6 68 6 2 4 23 41 -16.940 -7.378 -0.009 -15.656 -15.935 -16.330 -13.995 -14.277 -5.254 -10.514 -4.908 -5.787 3.939 -3.909 -13.417 -2.939 -13.536 -12.681 -1.809 -13.829 -3.281 -12.218 ML 65 63 6 68 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 22 41 -5.602 -0.047 -9.113 -7.281 -8.387 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 28 C G - - MP 70 69 6 74 6 2 4 20 39 -16.940 -16.879 -0.000 -15.656 -15.935 -16.330 -13.995 -14.277 -5.106 -10.513 -4.145 -13.457 3.913 -4.992 -13.416 -1.694 -5.423 -12.681 -2.596 -13.829 -1.636 -12.218 ML 71 69 6 74 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 27 G A - - MP 76 75 6 80 4 2 4 18 37 -16.167 -16.374 -0.000 -14.788 -0.630 -11.695 -13.186 -8.006 -1.881 -16.119 -10.315 -13.192 3.858 -4.169 -13.416 -1.064 -4.663 -14.454 -12.193 -11.794 ML 77 75 6 80 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 27 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 82 81 6 84 3 1 3 16 34 -17.076 -0.000 -15.730 1.994 -6.914 -12.159 -6.859 D 83 81 6 84 3 0 0 21 39 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 85 84 3 87 3 1 3 15 33 -17.076 -0.000 -15.730 -3.448 -13.316 1.963 -6.611 D 86 84 3 87 3 0 0 19 38 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 88 87 3 90 3 1 2 14 32 -3.649 -0.120 -15.730 -4.774 0.482 -4.464 1.334 D 89 87 3 90 3 0 0 17 35 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 2 14 32 -3.245 -0.162 -10.989 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - G - - - ML 91 90 3 93 3 1 2 12 30 -17.076 -0.000 -15.730 -3.605 -13.302 1.964 -5.995 D 92 90 3 93 3 0 0 17 36 -6.174 -1.687 -0.566 IL 93 93 3 93 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 94 93 3 96 3 1 2 11 29 -17.076 -0.000 -15.730 -6.231 -12.292 1.991 -6.337 D 95 93 3 96 3 0 0 16 35 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - U - - - ML 97 96 3 99 3 1 1 9 28 -17.076 -0.403 -2.036 -10.590 -5.011 -6.798 1.985 D 98 96 3 99 3 0 0 15 34 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - C - - - ML 100 99 3 102 3 1 1 8 26 -5.870 -0.025 -15.327 -6.699 1.911 -6.398 -2.200 D 101 99 3 102 3 0 0 7 26 -16.460 -0.023 -5.969 IL 102 102 3 102 3 1 1 8 26 -5.579 -0.035 -8.279 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - U - - - ML 103 102 3 105 3 1 1 7 25 -17.070 -0.000 -15.724 -2.276 -2.467 -2.096 1.757 D 104 102 3 105 3 0 0 10 29 -10.514 -0.050 -4.906 IL 105 105 3 105 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - A - - - ML 106 105 3 108 2 1 1 1 1 * 0.000 1.953 -12.226 -3.726 -4.276 D 107 105 3 108 2 0 0 0 0 * 0.000 IL 108 108 3 108 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 109 108 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 110 56 1 111 3 0 1 489 1062 -6.815 -0.013 -15.730 IL 111 111 2 111 3 1 1 490 1063 -5.074 -0.050 -7.774 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - G - - - ML 112 111 2 114 5 1 2 489 1062 -16.009 -0.005 -8.607 -10.437 -16.928 -2.046 -6.868 1.888 -4.405 D 113 111 2 114 5 0 0 486 1059 -4.959 -0.803 -4.221 -2.596 -2.508 IL 114 114 3 114 5 1 1 489 1062 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 109 C G - - MP 115 114 3 119 6 2 2 488 1061 -16.935 -16.874 -0.000 -15.651 -15.931 -16.326 -3.210 -10.932 -8.049 -2.204 -2.374 -12.074 3.325 -6.123 -11.088 -0.781 -6.064 -1.039 1.992 -11.413 -2.141 -2.710 ML 116 114 3 119 6 1 1 487 1060 -9.371 -9.717 -0.103 -4.126 -9.567 -7.097 -3.814 1.908 -4.530 -2.903 MR 117 114 3 119 6 1 1 486 1059 -8.502 -7.231 -3.139 -7.209 -0.240 -5.422 1.628 -2.011 -1.679 -1.520 D 118 114 3 119 6 0 0 480 1053 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 119 119 5 119 6 1 1 487 1060 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 120 120 6 120 5 1 1 487 1060 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 108 U A - - MP 121 120 6 125 6 2 2 486 1059 -11.700 -16.878 -0.001 -11.530 -15.934 -16.329 -11.237 -10.937 -8.190 -1.000 -8.676 -12.081 2.459 -8.008 -7.186 0.869 -11.608 -7.025 3.014 -6.077 -4.530 -6.502 ML 122 120 6 125 6 1 1 484 1057 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 123 120 6 125 6 1 1 484 1057 -8.502 -7.231 -0.390 -7.209 -2.343 -5.422 1.628 -2.011 -1.679 -1.520 D 124 120 6 125 6 0 0 478 1051 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 125 125 5 125 6 1 1 485 1058 -3.305 -3.568 -0.410 -5.224 -6.000 -5.660 0.000 0.000 0.000 0.000 IR 126 126 6 126 5 1 1 485 1058 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 107 g c - - MP 127 126 6 131 6 2 2 484 1057 -16.939 -16.879 -0.000 -15.655 -15.935 -16.330 -10.905 -7.183 -10.724 2.879 -11.854 -7.180 -2.051 -6.290 -6.196 2.887 -4.948 -3.646 -0.619 -6.603 -5.639 -2.587 ML 128 126 6 131 6 1 1 482 1055 -7.225 -7.571 -1.516 -0.736 -7.421 -4.950 -0.399 -1.386 1.188 -0.784 MR 129 126 6 131 6 1 1 481 1054 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 6 131 6 0 0 477 1050 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 483 1056 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 483 1056 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 106 G C - - MP 133 132 6 137 6 2 2 482 1055 -16.940 -16.879 -0.000 -15.655 -15.935 -16.330 -10.956 -5.933 -10.775 -4.296 -5.261 -5.637 1.582 -6.618 -7.215 3.633 -11.451 -4.591 -4.938 -4.968 -1.478 -9.734 ML 134 132 6 137 6 1 1 481 1054 -7.000 -7.346 -0.632 -1.755 -7.196 -4.725 -0.298 0.785 -1.022 -0.042 MR 135 132 6 137 6 1 1 479 1052 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 476 1049 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 481 1054 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 481 1054 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 40 105 A U - - MP 139 138 6 143 4 2 2 480 1053 -16.167 -16.374 -0.000 -14.788 -10.907 -1.954 -5.603 3.350 -11.854 -11.322 -0.744 -2.435 -8.832 1.851 -11.410 -3.227 -0.111 -6.504 -8.929 -3.607 ML 140 138 6 143 4 1 1 479 1052 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 4 1 1 477 1050 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 142 138 6 143 4 0 0 476 1049 -4.568 -4.250 -2.265 -0.520 IL 143 143 5 143 4 1 1 480 1053 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 144 144 6 144 3 1 1 479 1052 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - u - - - ML 145 144 6 147 3 1 1 478 1051 -17.076 -0.001 -11.121 -6.029 0.953 -4.298 0.999 D 146 144 6 147 3 0 0 474 1047 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 478 1051 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - U - - - ML 148 147 3 150 3 1 1 477 1050 -17.075 -0.000 -15.729 -5.493 -4.868 -5.164 1.969 D 149 147 3 150 3 0 0 472 1045 -7.853 -3.366 -0.154 IL 150 150 3 150 3 1 1 477 1050 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - u - - - ML 151 150 3 153 3 1 1 476 1049 -17.075 -0.000 -15.729 0.001 -0.001 -0.002 0.002 D 152 150 3 153 3 0 0 472 1045 -7.853 -0.350 -2.245 IL 153 153 3 153 3 1 1 475 1048 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - u - - - ML 154 153 3 156 3 1 1 475 1048 -17.076 -0.000 -15.730 0.001 -0.001 -0.002 0.002 D 155 153 3 156 3 0 0 456 1029 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 474 1047 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - a - - - ML 157 156 3 159 3 1 1 474 1047 -17.076 -0.000 -15.730 0.017 -0.016 0.011 -0.012 D 158 156 3 159 3 0 0 440 1013 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 472 1045 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - G - - - ML 160 159 3 162 3 1 1 473 1046 -1.424 -0.673 -15.730 -3.818 -6.414 1.967 -6.795 D 161 159 3 162 3 0 0 370 943 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 503 1076 -0.046 -4.982 -18.029 0.000 0.000 0.000 0.000 [ MATL 42 ] 104 - U - - - ML 163 162 3 165 2 1 1 1 1 * 0.000 -0.129 -0.248 -5.368 1.150 D 164 162 3 165 2 0 0 0 0 * 0.000 IL 165 165 3 165 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 166 165 3 -1 0 0 0 0 0 [ BEGR 44 ] - - - - - - S 167 54 1 168 3 0 5 114 221 -17.076 -0.000 -15.730 IL 168 168 2 168 3 1 7 115 222 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 110 - U - - - ML 169 168 2 171 2 1 5 114 221 -2.677 -0.245 -3.924 -4.219 -5.694 1.949 D 170 168 2 171 2 0 4 90 197 -8.445 -0.004 IL 171 171 3 171 2 1 7 124 231 -0.248 -2.662 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 211 0 4 50 72 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 31 53 -0.190 -9.670 -6.337 -3.187 [ MATP 48 ] 126 150 C G - - MP 174 173 1 178 6 2 2 31 53 -16.750 -6.409 -0.017 -15.466 -15.746 -16.141 -11.017 -5.079 -7.004 0.781 -10.022 -11.802 3.297 -6.904 -10.917 1.760 -11.403 -2.199 -0.390 -11.128 -4.861 -9.617 ML 175 173 1 178 6 1 1 32 54 -8.461 -0.347 -3.521 -3.216 -8.657 -6.186 -2.253 1.737 -3.085 -1.565 MR 176 173 1 178 6 1 1 31 53 -12.050 -2.840 -6.688 -10.757 -0.771 -1.922 -3.958 -4.087 0.489 1.306 D 177 173 1 178 6 0 0 23 45 -17.777 -16.475 -12.272 -12.954 -12.972 -0.001 IL 178 178 5 178 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 53 -1.584 -0.593 -10.740 -8.908 -10.013 0.000 0.000 0.000 0.000 [ MATP 49 ] 127 147 u a - - MP 180 179 6 184 6 2 2 29 51 -5.595 -8.673 -0.115 -8.301 -15.751 -4.310 -2.878 -10.753 -3.030 -0.017 -3.374 -11.896 1.918 -10.571 -10.910 1.491 -11.424 -7.373 2.806 -7.867 0.082 -9.629 ML 181 179 6 184 6 1 1 27 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 30 52 -0.073 -10.039 -5.948 -10.018 -5.152 -8.231 1.979 -6.031 -5.434 -5.659 D 183 179 6 184 6 0 0 23 45 -17.820 -16.518 -12.315 -12.997 -1.508 -0.626 IL 184 184 5 184 6 1 1 29 51 -1.270 -0.790 -7.383 -11.120 -11.896 -11.557 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 25 48 -7.672 -3.406 -11.183 -0.153 -10.457 0.000 0.000 0.000 0.000 [ MATP 50 ] 130 145 C G - - MP 186 185 6 190 6 2 2 27 49 -16.644 -16.583 -0.563 -15.360 -15.639 -1.630 -10.942 -10.643 -8.597 1.372 -9.808 -2.772 3.078 -6.288 -10.800 0.526 -6.209 -4.187 1.546 -11.124 -1.436 -9.519 ML 187 185 6 190 6 1 1 23 45 -9.482 -9.828 -4.542 -0.079 -9.678 -7.207 -1.401 -1.732 -0.450 1.372 MR 188 185 6 190 6 1 1 24 46 -14.420 -13.149 -9.057 -13.127 -1.356 -0.720 -8.025 -8.506 1.299 0.616 D 189 185 6 190 6 0 0 22 44 -17.877 -16.575 -12.372 -13.055 -13.072 -0.001 IL 190 190 5 190 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 26 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 131 144 C G - - MP 192 191 6 196 4 2 2 25 47 -3.305 -6.894 -0.240 -4.511 -3.724 -10.081 -3.763 -2.787 -1.116 -11.223 3.653 -5.435 -1.108 -0.014 -10.751 -4.760 -0.472 -10.562 -1.284 -5.616 ML 193 191 6 196 4 1 1 21 44 -6.617 -6.799 -0.060 -5.529 -3.360 -3.068 -4.145 1.898 MR 194 191 6 196 4 1 1 23 45 -11.097 -0.017 -7.993 -7.053 -6.465 -8.228 1.992 -7.225 D 195 191 6 196 4 0 0 22 44 -4.413 -14.817 -0.230 -3.320 IL 196 196 5 196 4 1 1 26 48 -1.264 -0.780 -9.518 -13.256 0.000 0.000 0.000 0.000 IR 197 197 6 197 3 1 1 22 44 -1.225 -2.355 -1.408 0.000 0.000 0.000 0.000 [ MATL 52 ] 135 - g - - - ML 198 197 6 200 3 1 1 10 28 -16.865 -0.000 -11.673 -1.041 -1.636 0.830 0.501 D 199 197 6 200 3 0 0 9 27 -15.617 -11.130 -0.001 IL 200 200 3 200 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 136 - u - - - ML 201 200 3 203 3 1 1 8 27 -16.865 -0.003 -8.883 -0.025 0.323 -2.063 0.611 D 202 200 3 203 3 0 0 8 26 -15.620 -11.133 -0.001 IL 203 203 3 203 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 137 - a - - - ML 204 203 3 206 3 1 1 7 25 -16.862 -0.429 -1.959 0.898 -0.184 -2.801 0.154 D 205 203 3 206 3 0 0 7 25 -15.639 -11.152 -0.001 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 138 - a - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 0.764 -4.806 0.183 0.178 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 [ BEGR 57 ] - - - - - - S 211 172 1 212 3 0 0 27 45 -17.076 -0.027 -5.769 IL 212 212 2 212 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 151 - G - - - ML 213 212 2 215 3 1 2 26 45 -3.114 -0.177 -15.703 -1.314 -4.556 1.738 -2.180 D 214 212 2 215 3 0 0 25 44 -6.422 -0.027 -7.132 IL 215 215 3 215 3 1 1 26 45 -8.641 -0.004 -11.341 0.000 0.000 0.000 0.000 [ MATL 59 ] 153 - C - - - ML 216 215 3 218 5 1 1 25 44 -16.009 -0.007 -15.824 -7.711 -16.928 -6.531 1.915 -11.575 -2.193 D 217 215 3 218 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 218 218 3 218 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 154 173 G C - - MP 219 218 3 223 6 2 2 24 43 -16.933 -16.872 -0.000 -15.649 -15.929 -16.324 -7.388 -2.493 -10.719 0.036 -11.850 -11.314 -1.115 -11.410 -6.692 3.699 -5.297 0.141 -2.437 -6.009 -8.924 -9.685 ML 220 218 3 223 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 221 218 3 223 6 1 1 24 42 -10.742 -9.471 -0.967 -9.449 -1.059 -7.663 -4.856 1.955 -5.402 -3.939 D 222 218 3 223 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 223 223 5 223 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 224 224 6 224 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 155 172 U A - - MP 225 224 6 229 6 2 2 22 41 -7.044 -16.876 -0.011 -15.652 -15.932 -16.327 -7.056 -10.934 -3.141 -0.449 -5.402 -12.077 1.594 -7.463 -7.087 -1.295 -11.605 -5.137 3.527 -5.915 -3.280 -7.267 ML 226 224 6 229 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 227 224 6 229 6 1 1 23 41 -9.778 -8.507 -0.148 -8.485 -3.619 -6.698 1.911 -3.931 -3.428 -3.624 D 228 224 6 229 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 229 229 5 229 6 1 1 22 40 -6.741 -7.004 -0.033 -8.659 -9.435 -9.096 0.000 0.000 0.000 0.000 IR 230 230 6 230 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 157 171 G C - - MP 231 230 6 235 6 2 2 20 39 -16.940 -16.879 -0.000 -15.656 -15.935 -16.330 -14.309 -4.537 -15.310 -0.006 -4.338 -12.893 -2.501 -15.223 -12.837 3.876 -13.103 -4.333 -11.031 -13.262 -13.063 -14.024 ML 232 230 6 235 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 233 230 6 235 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 234 230 6 235 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 235 235 5 235 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 236 236 6 236 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 158 170 G C - - MP 237 236 6 241 6 2 2 18 37 -16.940 -16.879 -0.000 -15.656 -15.935 -16.330 -10.909 -4.499 -7.670 0.768 -11.858 -6.725 -2.342 -11.418 -5.498 3.789 -7.784 -2.982 -5.131 -4.943 -8.932 -9.693 ML 238 236 6 241 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 6 241 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 6 241 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 159 169 G C - - MP 243 242 6 247 4 2 2 16 35 -16.167 -16.374 -0.000 -14.788 -14.922 -4.564 -17.506 -4.431 -16.527 -3.216 -10.799 -16.843 -4.299 3.965 -5.062 -3.936 -11.170 -4.576 -13.260 -16.754 ML 244 242 6 247 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 246 242 6 247 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 247 247 5 247 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 248 248 6 248 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 160 - U - - - ML 249 248 6 251 3 1 1 13 32 -17.076 -0.000 -15.730 -6.435 -5.846 -6.520 1.986 D 250 248 6 251 3 0 0 19 37 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 161 - U - - - ML 252 251 3 254 3 1 1 12 30 -17.076 -0.000 -15.730 -13.920 -4.810 -15.201 1.987 D 253 251 3 254 3 0 0 17 36 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 162 - C - - - ML 255 254 3 257 3 1 1 11 29 -7.364 -0.009 -15.730 -6.691 1.950 -6.159 -3.159 D 256 254 3 257 3 0 0 15 34 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 12 30 -4.577 -0.071 -7.277 0.000 0.000 0.000 0.000 [ MATL 68 ] 164 - G - - - ML 258 257 3 260 3 1 1 9 28 -17.076 -0.000 -15.730 -0.437 -6.038 1.699 -11.735 D 259 257 3 260 3 0 0 16 34 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 165 - A - - - ML 261 260 3 263 3 1 1 8 26 -17.076 -0.000 -15.730 1.989 -6.537 -6.626 -6.684 D 262 260 3 263 3 0 0 14 33 -6.174 -1.687 -0.566 IL 263 263 3 263 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 166 - A - - - ML 264 263 3 266 3 1 1 6 12 -7.293 -0.009 -15.730 1.917 -6.310 -2.541 -4.662 D 265 263 3 266 3 0 0 5 11 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 7 12 -4.640 -0.068 -7.341 0.000 0.000 0.000 0.000 [ MATL 71 ] 168 - U - - - ML 267 266 3 269 2 1 1 1 1 * 0.000 -6.398 -0.248 -6.862 1.650 D 268 266 3 269 2 0 0 0 0 * 0.000 IL 269 269 3 269 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 270 269 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Leu ACC euk-Leu-r2-031616 LENG 84 MAXL 540 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 10:07:09 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Leu-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Leu-r2-031616.sto NSEQ 2096 EFFN 7.279999 CKSUM 1281515033 STATS LOCAL MSV -8.5435 0.71866 STATS LOCAL VITERBI -9.5647 0.71866 STATS LOCAL FORWARD -3.4369 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59232 1.39746 1.18257 1.41538 1.38629 1.38629 1.38629 1.38629 0.02256 4.49613 4.49613 1.46634 0.26236 0.00000 * 1 1.72294 2.73687 0.38872 2.54134 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04625 4.49613 3.38020 1.46634 0.26236 1.09861 0.40547 2 2.12869 1.20695 1.26932 1.20106 2 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02333 4.47305 4.45230 1.46634 0.26236 1.61986 0.22056 3 2.07660 0.79592 1.97681 1.25538 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.03506 4.47281 3.77080 1.46634 0.26236 1.60325 0.22470 4 0.98477 1.74633 1.20247 1.88645 4 a - - ( 1.38629 1.38629 1.38629 1.38629 0.02336 4.46136 4.46136 1.46634 0.26236 1.18992 0.36276 5 1.63258 2.04024 0.55723 2.28489 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02323 4.47118 4.46312 1.46634 0.26236 1.65314 0.21251 6 1.97323 1.94746 0.58120 1.83804 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02314 4.47108 4.47108 1.46634 0.26236 1.64663 0.21406 7 1.01278 2.16335 1.02175 1.82085 7 a - - ( 1.38629 1.38629 1.38629 1.38629 0.02313 4.47118 4.47118 1.46634 0.26236 0.48272 0.95999 8 3.37568 3.25901 3.86069 0.09836 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 9 3.60477 4.57981 0.05547 4.10379 9 G - - , 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 10 2.11815 2.67690 0.30524 2.60337 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02888 4.05625 4.49628 1.00612 0.45513 1.09861 0.40547 11 4.27196 0.08074 3.99806 3.09533 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 12 3.77702 0.13628 3.35771 2.66355 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 13 2.37729 2.60468 0.25991 2.77816 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 14 0.04382 4.39136 4.14532 4.22341 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 15 3.27775 4.58765 0.06683 4.08905 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 16 2.47774 1.19313 2.98950 0.57539 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08610 2.64015 4.49628 0.36252 1.19048 1.09861 0.40547 17 3.30717 4.57536 0.06668 4.04101 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 18 3.81960 4.88583 0.04406 4.29632 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 19 3.37431 3.13959 3.82024 0.10477 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.23131 4.49628 1.63292 1.46634 0.26236 1.09861 0.40547 20 3.22285 0.16677 3.75618 2.40359 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04009 3.66395 4.29269 0.85684 0.55252 0.12276 2.15831 21 2.31822 2.42034 2.61499 0.30179 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02262 4.49343 4.49343 1.46634 0.26236 0.95307 0.48704 22 0.09180 3.85312 3.30294 3.51572 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 23 0.26948 2.86528 2.60894 2.24770 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 24 2.96640 3.50225 0.11687 3.55160 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.02721 4.15430 4.49628 1.09348 0.40804 1.09861 0.40547 25 3.32085 4.10492 0.07323 4.01717 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.02789 4.12620 4.47752 1.06770 0.42129 1.09861 0.40547 26 2.83998 0.36963 2.51167 1.77519 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.02544 4.49607 0.98031 0.47031 1.08615 0.41176 27 2.51797 3.78848 0.15028 3.31648 34 G - - , 1.38629 1.38629 1.38629 1.38629 0.02310 4.49628 4.44952 1.46634 0.26236 1.09861 0.40547 28 2.24309 0.80813 1.90980 1.20375 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.02257 4.49575 4.49575 1.46634 0.26236 1.11444 0.39764 29 2.31272 1.08597 1.81641 0.91423 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.02279 4.47608 4.49575 1.44138 0.26997 1.06768 0.42130 30 1.18436 2.52065 0.67700 2.24895 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 31 2.08195 1.83204 0.49091 2.27152 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 32 0.98507 2.12570 1.00405 1.96010 40 a - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 33 2.47524 0.87897 2.97749 0.79912 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02289 4.49628 4.46753 1.46634 0.26236 1.09861 0.40547 34 3.06891 2.96057 3.50352 0.13737 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02256 4.49595 4.49595 1.46634 0.26236 1.10829 0.40066 35 1.28335 1.50338 1.52114 1.26566 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02256 4.49595 4.49595 1.46634 0.26236 1.07954 0.41514 36 1.28337 1.50336 1.52112 1.26568 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 37 1.27832 1.50953 1.51553 1.27015 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 38 3.29015 4.36377 0.07052 4.01115 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.36200 1.22907 4.49628 3.43446 0.03277 1.09861 0.40547 39 1.43101 1.53711 2.55097 0.75945 104 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 40 2.17713 1.08475 1.98682 0.88791 105 u - - > 1.38629 1.38629 1.38629 1.38629 0.02273 4.49628 4.48112 1.46634 0.26236 1.09861 0.40547 41 2.61568 0.54535 1.69070 1.81490 106 C - - > 1.38629 1.38629 1.38629 1.38629 0.02263 4.49611 4.48976 1.46634 0.26236 1.10369 0.40294 42 2.50968 0.75372 2.33634 1.04580 107 c - - > 1.38629 1.38629 1.38629 1.38629 0.02256 4.49604 4.49604 1.46634 0.26236 1.08439 0.41265 43 1.01428 1.93736 0.99122 2.10268 108 g - - > 1.38629 1.38629 1.38629 1.38629 0.02452 4.49628 4.33704 1.46634 0.26236 1.09861 0.40547 44 1.34912 2.15563 0.73116 1.94247 109 g - - > 1.38629 1.38629 1.38629 1.38629 0.02260 4.49435 4.49435 1.46634 0.26236 0.99531 0.46141 45 2.91130 2.87679 3.49547 0.15205 110 U - - , 1.38629 1.38629 1.38629 1.38629 0.14915 2.17108 3.70888 1.85176 0.17074 1.09861 0.40547 46 1.94940 0.86895 1.43933 1.60364 126 c - - < 1.38629 1.38629 1.38629 1.38629 0.10216 4.48284 2.45553 1.46634 0.26236 1.32127 0.31033 47 1.92695 1.28285 1.60597 0.97692 127 u - - < 1.38629 1.38629 1.38629 1.38629 0.08573 3.60246 2.90215 0.73703 0.65111 2.36756 0.09839 48 1.78506 0.95787 1.75199 1.29070 130 c - - < 1.38629 1.38629 1.38629 1.38629 0.30787 4.36321 1.37733 1.46634 0.26236 1.93931 0.15526 49 1.98140 0.84282 1.71732 1.37800 131 c - - < 1.38629 1.38629 1.38629 1.38629 0.13335 2.50710 3.13878 0.43302 1.04568 0.23044 1.58077 50 1.55211 1.99554 1.10032 1.14102 135 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06197 4.42457 3.03425 1.46634 0.26236 2.21987 0.11499 51 1.32736 1.32428 2.12882 1.05025 136 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02674 4.38777 4.27205 1.46634 0.26236 2.50325 0.08536 52 0.95319 1.55299 2.19848 1.23133 137 a - - _ 1.38629 1.38629 1.38629 1.38629 0.22387 4.38624 1.67059 1.46634 0.26236 0.76837 0.62319 53 1.01637 2.16618 1.43112 1.25724 138 a - - _ 1.38629 1.38629 1.38629 1.38629 0.49774 2.62377 1.14079 0.57215 0.83082 0.45978 0.99810 54 1.54028 1.92073 0.74748 1.79806 144 g - - > 1.38629 1.38629 1.38629 1.38629 0.05025 4.12712 3.41501 1.46634 0.26236 0.35325 1.21200 55 1.48689 1.88043 0.85787 1.62283 145 g - - > 1.38629 1.38629 1.38629 1.38629 0.08409 3.34589 3.09185 0.59288 0.80460 0.97798 0.47172 56 1.14340 1.72513 1.08857 1.79327 147 g - - > 1.38629 1.38629 1.38629 1.38629 0.03499 3.80800 4.40686 1.00567 0.45539 2.16396 0.12202 57 1.80467 1.56166 0.79719 1.74246 150 g - - > 1.38629 1.38629 1.38629 1.38629 0.03877 4.40961 3.65491 1.46634 0.26236 0.22445 1.60424 58 1.97707 3.01737 0.32271 2.42578 151 G - - , 1.38629 1.38629 1.38629 1.38629 0.11593 2.32119 4.48250 0.21630 1.63730 0.64084 0.74834 59 3.62858 0.12366 4.21961 2.58951 153 C - - , 1.38629 1.38629 1.38629 1.38629 0.02624 4.49628 4.21689 1.46634 0.26236 1.09861 0.40547 60 1.85989 2.59159 0.37012 2.54135 154 G - - < 1.38629 1.38629 1.38629 1.38629 0.02264 4.49268 4.49268 1.46634 0.26236 1.04390 0.43399 61 2.18043 1.30893 2.05851 0.71487 155 u - - < 1.38629 1.38629 1.38629 1.38629 0.02847 4.08048 4.49458 1.02852 0.44244 1.00620 0.45508 62 2.00722 2.83034 0.29344 2.79765 157 G - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 63 1.81110 2.72807 0.35691 2.64026 158 G - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 64 2.85574 3.56696 0.12241 3.52477 159 G - - < 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 65 3.24250 3.12286 3.72311 0.11346 160 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 66 3.69416 3.32361 4.22117 0.07858 161 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 67 3.66881 0.10171 4.08513 2.91177 162 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02725 4.15218 4.49628 1.09151 0.40903 1.09861 0.40547 68 1.69686 3.46978 0.29447 3.20181 164 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 69 0.05107 4.25806 3.94434 4.11796 165 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 70 0.13451 3.54246 2.80957 3.30533 166 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02749 4.13757 4.49628 1.07806 0.41590 1.09861 0.40547 71 2.80212 1.66568 3.33554 0.33595 168 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 72 3.71640 0.14113 3.48347 2.56916 169 C - - > 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 73 2.90376 0.40901 2.55001 1.59555 170 C - - > 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 74 3.02461 0.33646 2.67645 1.78189 171 C - - > 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 75 0.79996 2.22318 1.17757 2.00720 172 a - - > 1.38629 1.38629 1.38629 1.38629 0.02255 4.49628 4.49628 1.46634 0.26236 1.09861 0.40547 76 2.77792 0.46118 2.41462 1.52377 173 C - - > 1.38629 1.38629 1.38629 1.38629 0.04534 3.41090 4.48172 1.19768 0.35938 1.09861 0.40547 77 2.01172 1.12002 1.99390 0.90683 178 u - - ) 1.38629 1.38629 1.38629 1.38629 0.04807 4.49612 3.33025 1.46634 0.26236 1.10349 0.40304 78 2.37302 0.88396 1.58892 1.23956 179 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02322 4.47118 4.46371 1.46634 0.26236 1.65314 0.21251 79 2.49542 0.63488 1.92716 1.41892 180 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03310 4.47101 3.85754 1.46634 0.26236 1.64711 0.21394 80 2.08774 1.30609 1.61804 0.89927 181 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02336 4.46136 4.46136 1.46634 0.26236 1.10138 0.40408 81 1.57512 2.14429 0.64343 1.89461 182 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04550 3.40933 4.47305 1.20008 0.35835 0.50394 0.92671 82 1.33985 1.62509 1.09501 1.57656 186 g - - ) 1.38629 1.38629 1.38629 1.38629 0.04624 3.38028 4.49620 0.72914 0.65840 1.09861 0.40547 83 2.84470 0.43946 2.55343 1.51572 190 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03438 3.78789 4.49620 1.25008 0.33755 1.09861 0.40547 84 0.06799 4.09355 3.51902 3.94117 194 A - - : 1.38629 1.38629 1.38629 1.38629 0.01134 4.48498 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Lys ACC euk-Lys-r2-031616 STATES 233 NODES 62 CLEN 73 W 670 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 10:32:33 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Lys-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Lys-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Lys-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Lys-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Lys-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Lys-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Lys-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1952 EFFN 1952.000000 CKSUM 1972346474 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7988 0.71892 ECMLC 0.66252 -7.57375 1.97300 1600000 669951 0.001791 ECMGC 0.31720 -47.59045 -34.15971 1600000 28329 0.014120 ECMLI 0.65046 -7.16460 2.43995 1600000 619975 0.001936 ECMGI 0.32972 -44.17617 -31.30966 1600000 27828 0.014374 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 670 1411 -15.858 -17.103 -0.001 -10.457 IL 1 1 2 1 4 20 41 672 1412 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 42 673 1413 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 232 - g - - MR 3 2 3 5 5 26 50 672 1412 -5.299 -0.037 -15.721 -15.933 -16.825 0.130 -5.181 0.850 0.105 D 4 2 3 5 5 17 38 664 1404 -6.623 -1.688 -4.249 -5.680 -0.719 IR 5 5 3 5 5 24 50 674 1414 -0.596 -1.568 -12.520 -10.688 -11.793 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 228 G C - - MP 6 5 3 10 6 25 49 671 1411 -5.064 -5.112 -0.097 -15.553 -7.319 -16.227 -7.192 -2.572 -6.856 -1.155 -11.752 -5.872 -3.212 -4.440 -5.568 3.682 -5.290 0.230 0.099 -4.353 -7.171 -6.245 ML 7 5 3 10 6 21 41 670 1410 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 41 668 1409 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 17 37 658 1399 -10.651 -9.349 -5.146 -5.828 -5.846 -0.098 IL 10 10 5 10 6 23 47 668 1408 -8.563 -8.826 -6.743 -10.481 -0.022 -10.917 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 41 670 1411 -0.788 -2.529 -2.433 -10.558 -4.015 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 224 C G - - MP 12 11 6 16 6 27 50 669 1409 -7.496 -16.697 -0.008 -15.473 -15.753 -16.148 -1.902 -14.083 -4.576 -10.315 -0.701 -6.408 3.842 -2.876 -7.699 -2.378 -3.061 -12.477 -3.665 -13.641 -2.431 -12.030 ML 13 11 6 16 6 23 47 670 1410 -11.484 -0.038 -6.544 -6.239 -11.680 -9.209 1.988 -6.881 -6.227 -6.405 MR 14 11 6 16 6 23 46 667 1407 -13.473 -12.202 -8.111 -12.180 -0.007 -10.394 -6.337 0.178 1.509 -6.624 D 15 11 6 16 6 17 37 657 1398 -13.263 -11.961 -7.758 -8.440 -8.457 -0.016 IL 16 16 5 16 6 22 47 668 1408 -6.153 -6.416 -0.051 -8.071 -8.847 -8.508 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 48 669 1409 -1.027 -0.982 -10.999 -9.167 -10.273 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 221 C G - - MP 18 17 6 22 6 25 48 667 1407 -6.478 -16.716 -0.016 -15.493 -15.773 -16.168 -6.569 -11.439 -4.056 -5.184 -5.015 -3.265 3.900 -4.069 -11.504 -2.497 -5.414 -3.134 -2.061 -11.839 -2.183 -10.233 ML 19 17 6 22 6 20 41 665 1405 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 23 45 666 1406 -13.473 -12.202 -4.867 -12.180 -0.052 -10.394 -0.259 -7.055 1.654 -6.562 D 21 17 6 22 6 17 37 657 1398 -13.263 -11.961 -7.758 -8.440 -8.457 -0.016 IL 22 22 5 22 6 23 47 666 1407 -1.365 -8.089 -0.724 -9.744 -10.520 -10.181 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 42 666 1406 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 8 220 c g - - MP 24 23 6 28 6 23 46 665 1405 -5.586 -16.718 -0.046 -9.036 -7.826 -7.900 -6.674 -10.345 -3.963 -4.715 -1.696 -6.117 2.698 -4.255 -6.365 1.290 -2.750 -4.908 1.535 -6.252 1.768 -3.920 ML 25 23 6 28 6 20 41 663 1404 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 23 44 665 1405 -13.428 -12.157 -3.582 -12.135 -0.128 -10.349 -6.268 0.224 1.490 -6.541 D 27 23 6 28 6 17 37 657 1398 -13.263 -11.961 -7.758 -8.440 -8.457 -0.016 IL 28 28 5 28 6 24 46 667 1407 -0.422 -10.231 -1.988 -11.886 -12.662 -12.322 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 21 42 664 1404 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 13 219 G U - - MP 30 29 6 34 6 23 45 663 1403 -6.536 -7.261 -0.025 -15.484 -15.764 -16.159 -10.726 -3.757 -10.553 0.004 -6.411 -6.073 -1.184 -4.816 -7.597 1.938 -11.229 3.037 0.644 -7.854 -0.405 -4.352 ML 31 29 6 34 6 21 42 662 1403 -8.860 -9.206 -2.554 -0.298 -9.056 -6.586 -1.448 -2.387 1.578 -1.131 MR 32 29 6 34 6 22 43 664 1404 -13.484 -12.213 -8.121 -12.191 -0.007 -10.404 -6.019 -5.820 0.198 1.496 D 33 29 6 34 6 17 37 657 1398 -14.091 -12.790 -5.878 -9.269 -9.286 -0.030 IL 34 34 5 34 6 22 44 662 1402 -7.064 -7.327 -0.027 -8.982 -9.758 -9.419 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 22 44 662 1402 -5.553 -0.048 -9.064 -7.232 -8.338 0.000 0.000 0.000 0.000 [ MATP 7 ] 15 217 G U - - MP 36 35 6 40 6 21 43 661 1401 -16.769 -7.460 -0.024 -6.566 -15.764 -16.159 -10.820 -9.593 -5.342 -0.155 -11.134 -11.303 0.766 -4.560 -8.399 1.313 -5.635 3.357 -1.950 -10.572 -2.244 -3.216 ML 37 35 6 40 6 20 41 661 1402 -8.701 -9.047 -3.762 -0.139 -8.897 -6.427 -2.225 -2.097 -2.988 1.777 MR 38 35 6 40 6 21 42 663 1403 -13.484 -12.213 -8.121 -12.191 -0.007 -10.404 -6.450 -6.851 1.151 0.815 D 39 35 6 40 6 17 37 657 1398 -14.070 -12.769 -8.566 -9.248 -9.265 -0.009 IL 40 40 5 40 6 20 41 660 1401 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 20 42 660 1400 -5.379 -0.055 -8.890 -7.057 -8.163 0.000 0.000 0.000 0.000 [ MATP 8 ] 16 215 c g - - MP 42 41 6 46 4 19 41 659 1399 -15.979 -16.186 -0.000 -14.600 -6.118 -6.639 -2.890 0.820 -0.659 -3.252 2.835 -4.184 -8.573 0.901 -6.273 -0.788 1.848 -7.955 -3.827 -6.848 ML 43 41 6 46 4 20 40 661 1401 -1.545 -0.843 -3.416 -7.339 1.265 -3.945 0.575 -4.569 MR 44 41 6 46 4 21 41 662 1402 -0.013 -10.537 -8.404 -7.465 -6.842 -8.611 1.994 -7.603 D 45 41 6 46 4 17 37 657 1398 -9.495 -1.171 -4.908 -0.940 IL 46 46 5 46 4 20 40 661 1401 -0.522 -3.278 -2.321 -13.209 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 40 659 1400 -0.657 -1.756 -3.847 0.000 0.000 0.000 0.000 [ MATL 9 ] 23 - U - - - ML 48 47 6 50 3 17 39 657 1397 -16.960 -0.000 -15.614 -6.797 -6.340 -6.321 1.988 D 49 47 6 50 3 16 37 655 1396 -11.667 -1.106 -0.902 IL 50 50 3 50 3 18 39 657 1398 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 24 - A - - - ML 51 50 3 53 2 16 38 656 1396 -17.622 -0.000 1.813 -11.602 -1.119 -5.250 D 52 50 3 53 2 15 37 655 1395 -9.716 -0.002 IL 53 53 3 53 2 17 38 656 1397 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 15 37 655 1395 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 3 167 365 -16.973 -0.000 -15.627 IL 56 56 2 56 3 1 1 168 366 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 156 - G - - - ML 57 56 2 59 3 1 3 167 365 -16.973 -0.002 -9.482 0.269 -3.343 1.071 -0.749 D 58 56 2 59 3 0 0 155 352 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 167 364 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 157 - G - - - ML 60 59 3 62 3 1 2 166 364 -3.822 -0.106 -15.625 -3.681 -4.532 1.759 -1.020 D 61 59 3 62 3 0 0 126 324 -9.094 -0.352 -2.220 IL 62 62 3 62 3 1 3 194 391 -0.134 -3.491 -14.043 0.000 0.000 0.000 0.000 [ MATL 46 ] 177 - G - - - ML 63 62 3 65 3 1 1 65 129 -7.437 -0.073 -4.524 -4.848 -6.491 1.916 -2.477 D 64 62 3 65 3 0 0 63 127 -7.137 -2.650 -0.263 IL 65 65 3 65 3 1 1 65 129 -4.422 -0.080 -7.122 0.000 0.000 0.000 0.000 [ MATL 47 ] 179 - U - - - ML 66 65 3 68 3 1 2 64 128 -16.909 -0.000 -15.563 -4.919 -2.138 -6.512 1.899 D 67 65 3 68 3 0 0 63 127 -13.881 -0.007 -7.700 IL 68 68 3 68 3 1 1 65 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 180 - C - - - ML 69 68 3 71 5 1 1 63 127 -15.906 -0.000 -15.722 -15.934 -16.826 -5.243 1.698 -6.152 -0.485 D 70 68 3 71 5 0 0 61 125 -5.204 -1.048 -4.466 -1.758 -2.753 IL 71 71 3 71 5 1 1 63 127 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 181 211 G C - - MP 72 71 3 76 6 2 2 62 126 -16.837 -5.681 -0.029 -13.332 -15.833 -16.228 -6.861 -2.936 -6.913 1.012 -4.232 -4.518 1.947 -3.428 -7.008 3.153 -6.236 -0.467 -4.581 -10.475 -3.619 -5.352 ML 73 71 3 76 6 1 1 60 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 60 123 -7.213 -5.942 -1.850 -5.920 -0.675 -4.133 0.198 -0.677 0.419 -0.168 D 75 71 3 76 6 0 0 56 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 62 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 63 127 -0.835 -1.193 -11.776 -9.944 -11.050 0.000 0.000 0.000 0.000 [ MATP 50 ] 182 207 U A - - MP 78 77 6 82 6 2 2 60 124 -16.837 -16.777 -0.000 -15.553 -13.105 -16.228 -4.668 -3.652 -8.182 1.760 -7.190 -7.444 0.814 -5.617 -5.584 0.775 -7.946 -5.163 3.142 -5.487 -3.717 -6.384 ML 79 77 6 82 6 1 1 58 122 -6.531 -6.877 -0.975 -1.286 -6.727 -4.256 0.805 -0.691 -0.414 -0.179 MR 80 77 6 82 6 1 1 58 121 -7.213 -5.942 -1.850 -5.920 -0.675 -4.133 0.076 -0.384 -0.517 0.567 D 81 77 6 82 6 0 0 54 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 59 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 59 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 183 206 G C - - MP 84 83 6 88 6 2 2 58 122 -16.837 -16.777 -0.000 -15.553 -15.833 -16.228 -10.865 -4.770 -10.687 -1.412 -11.816 -5.643 -4.722 -11.376 -4.866 3.923 -6.136 -3.271 -3.123 -4.903 -8.890 -4.205 ML 85 83 6 88 6 1 1 56 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 56 120 -7.478 -6.207 -0.946 -6.185 -1.319 -4.399 -0.141 0.585 -0.850 0.055 D 87 83 6 88 6 0 0 53 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 57 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 57 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 184 205 G C - - MP 90 89 6 94 6 2 2 56 120 -16.838 -16.777 -0.000 -15.553 -15.833 -16.228 -7.532 -0.638 -7.392 -1.345 -12.376 -4.066 -7.426 -11.918 -4.510 3.850 -5.080 -2.123 -7.692 -2.780 -6.647 -10.211 ML 91 89 6 94 6 1 1 55 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 54 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 52 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 55 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 55 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 185 204 G C - - MP 96 95 6 100 4 2 2 54 118 -16.064 -16.271 -0.000 -14.685 -14.821 -4.986 -17.414 -8.890 -16.426 -4.925 -10.697 -16.747 -5.036 3.968 -4.738 -3.526 -11.068 -2.978 -13.158 -16.669 ML 97 95 6 100 4 1 1 53 117 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 52 116 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 51 114 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 54 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 54 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 186 - U - - - ML 102 101 6 104 3 1 1 52 116 -16.973 -0.000 -15.627 -6.430 -6.208 -6.742 1.988 D 103 101 6 104 3 0 0 50 113 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 53 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 187 - U - - - ML 105 104 3 107 3 1 1 51 115 -5.600 -0.030 -15.627 -14.000 -6.422 -15.386 1.996 D 106 104 3 107 3 0 0 49 112 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 62 126 -0.422 -1.981 -10.780 0.000 0.000 0.000 0.000 [ MATL 56 ] 192 - C - - - ML 108 107 3 110 3 1 1 47 110 -5.616 -0.030 -15.627 -6.888 1.946 -7.299 -2.930 D 109 107 3 110 3 0 0 45 108 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 60 122 -0.423 -1.981 -10.764 0.000 0.000 0.000 0.000 [ MATL 57 ] 197 - G - - - ML 111 110 3 113 3 1 1 9 15 -7.563 -0.008 -15.627 0.441 -6.487 1.395 -11.661 D 112 110 3 113 3 0 0 8 14 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 9 15 -4.313 -0.086 -7.013 0.000 0.000 0.000 0.000 [ MATL 58 ] 199 - A - - - ML 114 113 3 116 3 1 1 7 14 -7.478 -0.008 -15.627 1.956 -7.187 -4.925 -3.628 D 115 113 3 116 3 0 0 7 13 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 8 14 -4.387 -0.082 -7.087 0.000 0.000 0.000 0.000 [ MATL 59 ] 201 - G - - - ML 117 116 3 119 3 1 1 6 12 -7.532 -0.010 -9.521 -3.797 -1.651 1.740 -1.891 D 118 116 3 119 3 0 0 5 12 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 7 13 -4.340 -0.085 -7.040 0.000 0.000 0.000 0.000 [ MATL 60 ] 203 - C - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -5.739 1.555 -7.014 0.050 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 3 17 631 1372 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 3 17 631 1372 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 92 195 -0.000 -14.966 -14.374 -15.014 [ MATP 15 ] 25 58 G C - - MP 127 126 1 131 6 2 6 92 195 -6.605 -16.777 -0.015 -15.553 -15.833 -16.228 -14.685 -3.247 -16.672 -2.945 -16.360 -4.933 -10.695 -16.266 -12.760 3.948 -12.962 -1.974 -11.048 -5.237 -13.128 -6.321 ML 128 126 1 131 6 1 1 90 193 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 89 192 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 85 188 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 3 91 194 -7.064 -7.327 -0.027 -8.982 -9.758 -9.419 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 91 194 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 27 57 C G - - MP 133 132 6 137 6 2 6 90 193 -16.838 -16.777 -0.000 -15.553 -15.833 -16.228 -13.893 -14.175 -13.210 -10.412 -3.429 -0.448 3.892 -4.717 -13.314 -5.609 -6.005 -12.579 -5.587 -13.727 -2.133 -12.116 ML 134 132 6 137 6 1 1 88 191 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 87 190 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 84 187 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 89 192 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 89 192 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 28 56 U A - - MP 139 138 6 143 6 2 6 88 191 -7.411 -16.777 -0.009 -15.553 -15.833 -16.228 -5.064 -14.081 -13.209 -10.323 -3.021 -13.371 -7.290 -12.483 -8.539 -0.457 -13.432 -12.363 3.908 -5.572 -4.726 -4.765 ML 140 138 6 143 6 1 1 86 189 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 86 188 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 83 186 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 3 87 190 -6.304 -6.567 -0.045 -8.223 -8.999 -8.659 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 87 190 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 30 55 C G - - MP 145 144 6 149 4 2 5 86 189 -16.064 -16.271 -0.000 -14.685 -6.024 -14.175 -5.438 -10.412 -3.120 -2.864 3.915 -4.198 -7.034 -10.383 -5.256 -12.579 -6.064 -7.866 -0.963 -12.116 ML 146 144 6 149 4 1 1 85 188 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 84 187 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 83 185 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 86 189 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 85 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 31 - A - - - ML 151 150 6 153 3 1 3 84 187 -16.973 -0.000 -15.627 1.990 -6.993 -6.836 -6.621 D 152 150 6 153 3 0 0 82 184 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 84 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 32 - G - - - ML 154 153 3 156 3 1 2 83 186 -16.973 -0.000 -15.627 -0.241 -6.519 1.644 -5.776 D 155 153 3 156 3 0 0 81 184 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 83 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 33 - U - - - ML 157 156 3 159 3 1 1 82 185 -5.606 -0.131 -3.919 -4.882 -2.788 -6.318 1.929 D 158 156 3 159 3 0 0 80 183 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 3 85 188 -0.511 -1.749 -10.542 0.000 0.000 0.000 0.000 [ MATL 22 ] 38 - C - - - ML 160 159 3 162 3 1 1 81 184 -6.147 -0.021 -15.529 -5.500 1.399 -4.863 0.386 D 161 159 3 162 3 0 0 80 183 -14.477 -0.003 -8.868 IL 162 162 3 162 3 1 1 80 183 -1.155 -5.692 -0.911 0.000 0.000 0.000 0.000 [ MATL 23 ] 41 - G - - - ML 163 162 3 165 3 1 1 80 183 -16.954 -0.000 -15.608 -3.828 -7.138 1.967 -6.348 D 164 162 3 165 3 0 0 78 181 -12.168 -7.681 -0.007 IL 165 165 3 165 3 1 1 80 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 42 - G - - - ML 166 165 3 168 3 1 1 79 182 -16.954 -0.000 -15.608 -3.935 -7.259 1.970 -6.637 D 167 165 3 168 3 0 0 78 181 -12.168 -0.016 -6.560 IL 168 168 3 168 3 1 1 79 182 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 43 - U - - - ML 169 168 3 171 3 1 1 78 181 -3.839 -0.105 -15.627 -3.446 -2.383 -4.882 1.881 D 170 168 3 171 3 0 0 68 171 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 92 194 -0.258 -2.610 -13.147 0.000 0.000 0.000 0.000 [ MATL 26 ] 54 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.963 -6.640 -5.697 -3.819 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 1 615 1355 -6.036 -0.022 -15.627 IL 177 177 2 177 3 1 1 618 1358 -0.597 -1.566 -9.941 0.000 0.000 0.000 0.000 [ MATL 29 ] 62 - A - - - ML 178 177 2 180 5 1 2 615 1355 -15.906 -0.008 -7.504 -15.934 -16.826 1.296 -6.100 0.557 -4.071 D 179 177 2 180 5 0 0 612 1352 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 615 1355 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 63 155 U A - - MP 181 180 3 185 6 2 3 614 1354 -16.830 -16.769 -0.000 -13.028 -15.825 -16.220 -6.133 -12.539 -12.406 -4.449 -2.939 -7.284 1.203 -11.807 -3.822 -8.260 -12.710 -5.038 3.666 -5.004 -0.606 -6.539 ML 182 180 3 185 6 1 1 613 1353 -10.291 -0.089 -5.352 -5.046 -10.487 -8.017 -4.961 1.958 -5.493 -4.049 MR 183 180 3 185 6 1 1 612 1352 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 604 1344 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 613 1353 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 612 1352 -5.395 -3.483 -8.906 -0.182 -8.180 0.000 0.000 0.000 0.000 [ MATP 31 ] 64 153 G C - - MP 187 186 6 191 6 2 3 612 1352 -16.830 -7.489 -0.008 -15.545 -15.825 -16.220 -10.556 -3.318 -5.471 0.365 -5.571 -6.157 2.047 -0.652 -8.565 3.063 -6.123 -2.493 0.117 -3.853 -3.658 -9.436 ML 188 186 6 191 6 1 1 609 1350 -6.603 -6.949 -0.908 -1.358 -6.799 -4.329 0.120 -0.756 0.552 -0.226 MR 189 186 6 191 6 1 1 611 1351 -10.839 -9.568 -0.069 -9.546 -4.680 -7.760 -4.961 1.958 -5.493 -4.049 D 190 186 6 191 6 0 0 602 1342 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 611 1351 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 611 1351 -5.407 -0.054 -8.918 -7.085 -8.191 0.000 0.000 0.000 0.000 [ MATP 32 ] 65 151 A U - - MP 193 192 6 197 6 2 2 610 1350 -7.569 -16.777 -0.008 -15.553 -11.299 -16.228 -6.196 -5.208 -6.342 3.266 -10.522 -8.055 -0.140 -2.684 -8.963 0.139 -8.259 -1.693 0.939 -10.334 -8.066 0.944 ML 194 192 6 197 6 1 1 607 1347 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 606 1347 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 600 1340 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 609 1349 -6.159 -6.422 -0.050 -8.077 -8.853 -8.514 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 609 1349 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 67 150 G C - - MP 199 198 6 203 6 2 2 608 1348 -16.837 -7.570 -0.008 -15.553 -15.833 -16.228 -14.804 -3.289 -6.506 -8.883 -16.417 -4.164 -6.651 -16.684 -4.705 3.957 -4.831 -2.459 -11.065 -4.960 -13.154 -16.503 ML 200 198 6 203 6 1 1 605 1346 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 605 1345 -7.937 -6.666 -0.621 -6.644 -1.778 -4.858 -0.571 1.056 -1.321 -0.238 D 202 198 6 203 6 0 0 598 1339 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 607 1347 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 607 1347 -5.342 -0.056 -8.853 -7.021 -8.127 0.000 0.000 0.000 0.000 [ MATP 34 ] 68 148 A U - - MP 205 204 6 209 4 2 2 606 1346 -16.064 -16.271 -0.000 -14.685 -4.633 -4.299 -5.525 3.588 -14.884 -15.445 -3.964 -5.628 -7.049 1.883 -13.199 -4.780 -10.254 -13.935 -12.120 -4.444 ML 206 204 6 209 4 1 1 603 1344 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 599 1339 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 597 1337 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 605 1346 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 605 1345 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 69 - C - - - ML 211 210 6 213 3 1 1 604 1344 -16.973 -0.000 -15.627 -5.874 1.971 -6.855 -4.200 D 212 210 6 213 3 0 0 593 1333 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 603 1344 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 70 - U - - - ML 214 213 3 216 3 1 1 603 1343 -16.973 -0.000 -15.627 -6.355 -4.886 -6.110 1.978 D 215 213 3 216 3 0 0 587 1328 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 602 1342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 71 - u - - - ML 217 216 3 219 3 1 1 602 1342 -16.973 -0.000 -15.627 0.002 -0.002 -0.002 0.002 D 218 216 3 219 3 0 0 577 1318 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 600 1341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 72 - u - - - ML 220 219 3 222 3 1 1 601 1341 -16.973 -0.002 -9.361 0.002 -0.002 -0.002 0.002 D 221 219 3 222 3 0 0 558 1299 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 598 1338 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 73 - u - - - ML 223 222 3 225 3 1 1 600 1340 -16.971 -0.000 -15.625 0.002 -0.002 -0.002 0.002 D 224 222 3 225 3 0 0 475 1215 -9.201 -4.714 -0.059 IL 225 225 3 225 3 1 1 597 1337 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 74 - A - - - ML 226 225 3 228 3 1 1 599 1339 -1.850 -0.469 -15.625 1.905 -5.832 -2.374 -4.502 D 227 225 3 228 3 0 0 393 1134 -9.201 -0.128 -3.592 IL 228 228 3 228 3 1 1 649 1390 -0.036 -5.347 -17.864 0.000 0.000 0.000 0.000 [ MATL 41 ] 147 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.985 -6.206 -6.048 -6.414 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Lys ACC euk-Lys-r2-031616 LENG 73 MAXL 646 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 10:32:33 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Lys-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Lys-r2-031616.sto NSEQ 1952 EFFN 6.087341 CKSUM 1972346474 STATS LOCAL MSV -8.4733 0.71892 STATS LOCAL VITERBI -8.9041 0.71892 STATS LOCAL FORWARD -3.2665 0.71892 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54322 1.36944 1.20937 1.45384 1.38629 1.38629 1.38629 1.38629 0.02400 4.43471 4.43471 1.46634 0.26236 0.00000 * 1 1.87548 2.55234 0.41771 2.20485 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03206 4.43471 3.92738 1.46634 0.26236 1.09861 0.40547 2 3.36312 0.13903 3.26345 2.86618 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.05148 4.14346 3.37246 1.14933 0.38104 1.29769 0.31905 3 3.58720 0.12911 3.33146 2.85244 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03322 3.88979 4.40423 1.07003 0.42007 1.64262 0.21502 4 2.00455 1.11244 1.61734 1.08442 8 u - - ( 1.38629 1.38629 1.38629 1.38629 0.04708 3.59386 3.98993 1.41295 0.27895 1.53487 0.24269 5 1.82562 2.04566 0.63350 1.72115 13 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03295 3.90478 4.40095 0.95925 0.48318 1.75765 0.18929 6 1.86452 1.84779 0.60297 1.96424 15 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02483 4.40105 4.40105 1.46634 0.26236 0.57046 0.83301 7 1.72960 1.09055 1.60447 1.25310 16 c - - ( 1.38629 1.38629 1.38629 1.38629 0.04711 3.37885 4.42861 1.23137 0.34516 1.03500 0.43886 8 3.13883 3.03568 3.60936 0.12607 23 U - - , 1.38629 1.38629 1.38629 1.38629 0.02767 4.43177 4.17347 1.46634 0.26236 0.94567 0.49171 9 0.22961 3.33589 2.10488 3.04249 24 A - - , 1.38629 1.38629 1.38629 1.38629 0.02408 4.43148 4.43148 1.46634 0.26236 0.93402 0.49918 10 2.33785 3.10358 0.21424 2.96773 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03182 3.93895 4.43513 0.95925 0.48318 1.09861 0.40547 11 4.83465 0.03678 4.72077 3.94988 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 12 3.40987 2.54030 2.96229 0.17863 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.02846 4.12237 4.43513 1.12098 0.39447 1.09861 0.40547 13 4.41500 0.05377 4.27097 3.63881 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 14 0.05861 4.14294 3.81041 3.96829 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 15 1.56050 3.26444 0.36032 2.91326 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 16 2.85770 2.59112 3.39066 0.18155 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09188 3.61039 2.80115 1.30757 0.31537 1.09861 0.40547 17 2.37713 0.61876 2.96020 1.14961 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 3.86773 4.38500 0.94220 0.49392 0.32952 1.27035 18 3.19735 4.28287 0.07860 3.86726 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03402 4.43513 3.83515 1.46634 0.26236 1.09861 0.40547 19 3.23887 4.32688 0.07514 3.91347 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02423 4.42533 4.42533 1.46634 0.26236 0.74082 0.64765 20 2.64325 2.45749 3.20841 0.21965 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07840 2.75585 4.43513 1.77804 0.18509 1.09861 0.40547 21 0.09393 3.70406 3.48413 3.37115 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 22 3.87086 4.39204 0.04856 4.25559 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 23 0.19745 3.09200 2.38959 3.16770 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 24 4.13520 4.43158 0.03817 4.65096 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 25 3.22071 0.25311 2.92902 2.03839 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03561 3.76671 4.43513 1.25725 0.33468 1.09861 0.40547 26 0.60147 2.93185 1.14782 2.50877 62 A - - , 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 27 2.38524 1.35547 2.15373 0.62725 63 U - - < 1.38629 1.38629 1.38629 1.38629 0.02816 4.43513 4.14030 1.46634 0.26236 1.09861 0.40547 28 1.79207 1.44455 0.88118 1.69696 64 g - - < 1.38629 1.38629 1.38629 1.38629 0.02409 4.43105 4.43105 1.46634 0.26236 0.91201 0.51369 29 1.12485 1.67740 1.50195 1.32522 65 a - - < 1.38629 1.38629 1.38629 1.38629 0.02829 4.15062 4.41164 1.14823 0.38155 1.09861 0.40547 30 2.14162 2.82734 0.27969 2.69786 67 G - - < 1.38629 1.38629 1.38629 1.38629 0.02400 4.43484 4.43484 1.46634 0.26236 1.08302 0.41336 31 0.69330 2.75323 1.01174 2.62049 68 a - - < 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 32 3.58618 0.09858 4.07576 3.01202 69 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 33 3.04858 2.91250 3.52140 0.14078 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 34 1.27774 1.51091 1.52976 1.25866 71 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 35 1.27774 1.51091 1.52976 1.25866 72 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02513 4.43513 4.34559 1.46634 0.26236 1.09861 0.40547 36 1.27769 1.51097 1.52983 1.25860 73 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02402 4.43402 4.43402 1.46634 0.26236 1.12936 0.39044 37 0.16407 3.32792 2.66415 3.08367 74 A - - _ 1.38629 1.38629 1.38629 1.38629 0.25990 1.52785 4.43401 3.67769 0.02561 1.03982 0.43621 38 0.06657 4.00370 3.68967 3.85511 147 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 39 2.85882 1.11245 2.56652 0.62156 148 U - - > 1.38629 1.38629 1.38629 1.38629 0.02799 4.15093 4.43513 1.14853 0.38141 1.09861 0.40547 40 2.95617 0.32535 2.64783 1.86498 150 C - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 41 1.65328 1.65946 1.51238 0.92142 151 u - - > 1.38629 1.38629 1.38629 1.38629 0.02828 4.13801 4.42899 1.13598 0.38729 1.09861 0.40547 42 1.91412 0.95623 1.37080 1.54043 153 c - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43505 4.43505 1.46634 0.26236 1.09453 0.40751 43 0.72576 2.34638 1.18614 2.16341 155 a - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 44 1.23563 2.33975 0.88127 1.61576 156 g - - , 1.38629 1.38629 1.38629 1.38629 0.02504 4.43513 4.35259 1.46634 0.26236 1.09861 0.40547 45 2.33946 2.97690 0.31309 2.10798 157 G - - , 1.38629 1.38629 1.38629 1.38629 0.07906 2.74648 4.43411 2.34862 0.10037 1.05586 0.42755 46 2.93452 3.72332 0.13946 2.94002 177 G - - , 1.38629 1.38629 1.38629 1.38629 0.06200 4.12782 3.12349 1.12632 0.39189 1.10275 0.40340 47 2.78832 2.41830 3.32525 0.20648 179 U - - , 1.38629 1.38629 1.38629 1.38629 0.02480 4.40230 4.40230 1.46634 0.26236 0.43102 1.04939 48 2.68358 0.36361 3.33145 1.60555 180 C - - , 1.38629 1.38629 1.38629 1.38629 0.02399 4.43507 4.43507 1.46634 0.26236 1.10005 0.40475 49 1.69925 1.66785 0.67984 2.10513 181 G - - < 1.38629 1.38629 1.38629 1.38629 0.02399 4.43507 4.43507 1.46634 0.26236 1.10005 0.40475 50 1.65158 1.47174 1.65344 0.94846 182 u - - < 1.38629 1.38629 1.38629 1.38629 0.02407 4.43507 4.42906 1.46634 0.26236 1.10005 0.40475 51 1.96780 2.68566 0.34214 2.50337 183 G - - < 1.38629 1.38629 1.38629 1.38629 0.02400 4.43500 4.43500 1.46634 0.26236 1.09177 0.40890 52 1.84539 2.65349 0.37423 2.47917 184 G - - < 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 53 2.73644 3.47870 0.14233 3.29648 185 G - - < 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 54 3.15092 3.04960 3.64661 0.12360 186 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 55 3.66257 3.41063 4.19965 0.07654 187 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03973 3.60822 4.43513 1.41246 0.27911 1.09861 0.40547 56 3.53009 0.11781 4.03578 2.74630 192 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.61440 4.43513 1.41265 0.27905 1.09861 0.40547 57 1.12283 3.18408 0.55097 2.86760 197 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02800 4.15027 4.43513 1.14789 0.38171 1.09861 0.40547 58 0.10314 3.64456 3.37237 3.28178 199 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02825 4.13528 4.43513 1.13335 0.38854 1.09861 0.40547 59 2.24137 2.41846 0.35908 2.24141 201 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02911 4.14479 4.35473 1.14255 0.38420 1.09861 0.40547 60 2.57861 0.47532 3.23868 1.33477 203 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02402 4.43413 4.43413 1.46634 0.26236 1.04574 0.43299 61 3.58004 0.16469 3.30789 2.43756 204 C - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 62 2.76931 0.41254 2.46829 1.65760 205 C - - > 1.38629 1.38629 1.38629 1.38629 0.02399 4.43513 4.43513 1.46634 0.26236 1.09861 0.40547 63 2.77025 0.39737 2.49873 1.69783 206 C - - > 1.38629 1.38629 1.38629 1.38629 0.02405 4.43513 4.43037 1.46634 0.26236 1.09861 0.40547 64 1.06069 1.77662 1.32168 1.52378 207 a - - > 1.38629 1.38629 1.38629 1.38629 0.03892 3.63766 4.43507 1.09119 0.40920 1.09544 0.40705 65 2.34869 0.77689 1.56740 1.44357 211 c - - > 1.38629 1.38629 1.38629 1.38629 0.04539 3.58072 4.10296 1.12045 0.39472 1.09861 0.40547 66 1.37750 1.78837 0.99755 1.55222 215 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03133 4.13867 4.20640 1.14146 0.38471 1.19793 0.35927 67 2.23170 1.22839 1.68170 0.88230 217 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02912 4.09927 4.41331 1.10650 0.40154 1.28649 0.32329 68 1.99825 1.09993 1.78722 1.01030 219 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02419 4.42716 4.42716 1.46634 0.26236 0.98000 0.47050 69 1.44713 1.76073 0.84498 1.81235 220 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02408 4.43150 4.43150 1.46634 0.26236 1.18486 0.36498 70 3.04989 3.49551 0.11928 3.35973 221 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03403 3.83698 4.43150 0.88223 0.53419 0.94567 0.49171 71 2.96034 3.41875 0.13283 3.22318 224 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04621 3.40225 4.43471 1.01903 0.44776 1.09861 0.40547 72 2.41977 0.51097 2.37582 1.52231 228 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04344 3.48520 4.43466 1.21380 0.35249 1.09861 0.40547 73 1.25832 2.32818 1.04818 1.31744 232 g - - : 1.38629 1.38629 1.38629 1.38629 0.01207 4.42273 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Met ACC euk-Met-r2-031616 STATES 233 NODES 62 CLEN 73 W 537 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 11:21:09 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Met-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Met-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Met-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Met-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Met-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Met-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Met-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 713 EFFN 713.000000 CKSUM 1813572260 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.8155 0.71883 ECMLC 0.64579 -7.53291 1.93570 1600000 542994 0.002210 ECMGC 0.32629 -48.03926 -34.96990 1600000 28449 0.014060 ECMLI 0.64391 -6.92604 2.40808 1600000 489158 0.002453 ECMGI 0.35374 -44.06712 -32.05956 1600000 27974 0.014299 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 537 1103 -14.407 -15.653 -0.015 -6.639 IL 1 1 2 1 4 23 47 538 1105 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 49 539 1105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 175 - A - - MR 3 2 3 5 5 29 52 538 1104 -4.116 -0.086 -14.258 -14.470 -15.362 1.845 -4.220 -1.888 -3.561 D 4 2 3 5 5 20 43 532 1099 -8.533 -3.888 -6.159 -7.590 -0.135 IR 5 5 3 5 5 26 51 539 1105 -0.611 -3.493 -1.971 -10.386 -11.492 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 170 G C - - MP 6 5 3 10 6 28 51 537 1103 -15.315 -15.255 -0.000 -14.031 -14.311 -14.706 -1.568 -3.525 -9.109 0.302 -1.589 -8.005 -5.306 -9.800 -4.328 3.717 -4.568 -1.773 -1.268 -5.975 -7.314 -8.075 ML 7 5 3 10 6 24 48 536 1102 -11.767 -0.939 -6.828 -1.097 -11.963 -9.493 -4.721 1.535 -5.751 0.064 MR 8 5 3 10 6 21 44 534 1100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 20 43 532 1098 -12.842 -11.540 -7.337 -0.147 -8.037 -3.532 IL 10 10 5 10 6 22 45 536 1102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 25 50 537 1103 -1.041 -0.973 -10.405 -8.572 -9.678 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 167 C G - - MP 12 11 6 16 6 26 49 535 1101 -15.350 -15.289 -0.000 -14.066 -14.346 -14.741 -9.650 -9.347 -8.009 -1.486 -4.176 -7.221 3.002 -5.863 -9.509 2.133 -6.765 -1.540 1.388 -9.831 -2.466 -8.228 ML 13 11 6 16 6 23 47 532 1099 -11.236 -11.583 -6.297 -0.023 -11.432 -8.962 0.243 1.420 -4.766 -3.267 MR 14 11 6 16 6 21 44 533 1099 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 18 40 528 1094 -9.531 -8.230 -4.027 -4.709 -4.726 -0.221 IL 16 16 5 16 6 22 45 534 1100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 22 45 534 1100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 166 C G - - MP 18 17 6 22 6 24 47 533 1099 -15.350 -15.289 -0.059 -7.403 -4.873 -14.741 -9.652 -9.353 -8.010 -2.988 -4.395 -9.052 3.531 -4.668 -7.013 1.310 -5.831 -3.105 0.390 -9.835 -1.813 -8.229 ML 19 17 6 22 6 23 46 531 1098 -11.236 -11.583 -1.637 -0.566 -11.432 -8.962 1.985 -6.599 -5.965 -6.158 MR 20 17 6 22 6 21 44 531 1098 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 40 527 1094 -9.531 -8.230 -4.027 -4.709 -4.726 -0.221 IL 22 22 5 22 6 22 45 532 1098 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 22 45 532 1098 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 165 u g - - MP 24 23 6 28 6 23 46 531 1097 -15.306 -15.245 -0.017 -14.022 -14.301 -6.422 -3.913 -8.840 -9.038 0.695 -3.579 -6.348 0.713 -5.578 -8.974 1.816 -5.755 -6.686 0.749 -4.822 2.863 -6.331 ML 25 23 6 28 6 22 45 530 1096 -11.047 -11.393 -0.031 -5.802 -11.243 -8.773 -0.376 -3.792 1.586 -2.693 MR 26 23 6 28 6 21 43 530 1096 -11.933 -10.662 -6.571 -10.641 -0.021 -8.854 0.907 -5.109 1.043 -4.855 D 27 23 6 28 6 17 40 527 1093 -9.531 -8.230 -1.533 -4.709 -4.726 -0.802 IL 28 28 5 28 6 21 44 530 1096 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 21 44 530 1096 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 164 u a - - MP 30 29 6 34 6 21 44 529 1095 -5.374 -15.268 -0.035 -14.045 -14.325 -14.720 -3.174 -9.331 -9.630 -3.538 -5.546 -7.257 2.634 -9.149 -9.488 1.208 -5.862 -1.213 2.640 -8.751 -0.836 -7.766 ML 31 29 6 34 6 19 41 527 1094 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 20 42 529 1095 -11.933 -10.662 -6.571 -10.641 -0.021 -8.854 -1.055 -3.114 1.070 0.383 D 33 29 6 34 6 17 39 525 1092 -12.998 -11.697 -7.494 -8.176 -8.193 -0.019 IL 34 34 5 34 6 21 44 529 1095 -6.800 -0.068 -4.981 -8.718 -9.494 -9.154 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 20 43 528 1094 -5.958 -0.036 -9.469 -7.636 -8.742 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 162 c g - - MP 36 35 6 40 6 19 42 527 1093 -15.329 -15.268 -0.000 -14.045 -14.325 -14.720 -9.390 -6.233 -9.418 0.565 -3.744 -6.375 2.774 -6.603 -3.393 2.252 -2.811 -3.064 1.180 -9.586 -2.527 -8.088 ML 37 35 6 40 6 18 40 526 1092 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 19 41 528 1094 -11.933 -10.662 -6.571 -10.641 -0.021 -8.854 -4.301 -1.443 -5.036 1.828 D 39 35 6 40 6 17 39 525 1092 -12.998 -11.697 -7.494 -0.091 -8.193 -4.269 IL 40 40 5 40 6 18 40 526 1093 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 41 526 1093 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 161 U A - - MP 42 41 6 46 4 17 40 525 1091 -14.548 -6.867 -0.013 -13.169 -6.844 -8.034 -9.164 -0.759 -5.262 -9.777 -1.683 -9.728 -7.316 2.510 -9.823 0.360 3.001 -7.205 -4.569 -6.083 ML 43 41 6 46 4 17 40 526 1092 -6.999 -0.150 -3.748 -5.911 1.954 -4.869 -4.322 -4.584 MR 44 41 6 46 4 18 41 527 1094 -0.040 -8.982 -6.850 -5.910 1.987 -6.778 -6.132 -6.315 D 45 41 6 46 4 14 37 522 1088 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 40 526 1093 -0.518 -9.019 -1.740 -11.505 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 40 525 1091 -1.022 -0.988 -8.294 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - U - - - ML 48 47 6 50 3 15 38 523 1089 -15.523 -0.000 -14.177 -12.785 -11.418 -14.344 2.000 D 49 47 6 50 3 14 37 521 1088 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 39 523 1090 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 15 - A - - - ML 51 50 3 53 2 14 37 522 1088 -16.178 -0.000 1.070 -6.506 0.901 -5.518 D 52 50 3 53 2 13 36 521 1087 -8.445 -0.004 IL 53 53 3 53 2 15 38 522 1089 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 13 36 521 1087 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 2 162 352 -15.523 -0.000 -14.177 IL 56 56 2 56 3 1 1 163 353 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 104 - A - - - ML 57 56 2 59 3 1 2 162 352 -6.587 -0.044 -5.682 1.965 -5.049 -4.710 -5.220 D 58 56 2 59 3 0 0 160 350 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 162 352 -3.912 -0.115 -6.612 0.000 0.000 0.000 0.000 [ MATL 45 ] 106 - G - - - ML 60 59 3 62 3 1 3 161 351 -15.494 -0.000 -14.148 -2.902 -6.084 1.936 -5.364 D 61 59 3 62 3 0 0 160 349 -11.297 -0.029 -5.689 IL 62 62 3 62 3 1 1 161 351 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 125 - G - - - ML 63 62 3 65 3 1 3 160 350 -6.236 -0.019 -14.177 -2.025 -11.183 1.898 -5.179 D 64 62 3 65 3 0 0 157 347 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 160 350 -4.207 -0.093 -6.907 0.000 0.000 0.000 0.000 [ MATL 47 ] 127 - U - - - ML 66 65 3 68 3 1 2 159 348 -15.523 -0.000 -14.177 -3.327 -2.589 -9.091 1.900 D 67 65 3 68 3 0 0 156 346 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 159 349 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 128 - C - - - ML 69 68 3 71 5 1 2 158 347 -14.457 -0.000 -14.272 -14.484 -15.376 -6.623 1.926 -4.865 -2.678 D 70 68 3 71 5 0 0 155 345 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 157 347 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 129 158 G C - - MP 72 71 3 76 6 2 2 157 346 -15.394 -5.840 -0.026 -10.803 -14.389 -14.784 -4.011 -6.561 -9.187 -0.729 -5.362 -8.044 2.143 -8.070 -9.624 3.382 -2.123 -3.999 -5.640 -9.042 -2.908 -8.152 ML 73 71 3 76 6 1 1 154 344 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 154 344 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 149 339 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 156 346 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 156 345 -5.595 -0.047 -9.106 -7.274 -8.380 0.000 0.000 0.000 0.000 [ MATP 50 ] 130 156 u a - - MP 78 77 6 82 6 2 2 155 344 -15.393 -15.332 -0.000 -14.109 -14.389 -14.784 -6.486 -0.555 -9.688 1.450 -4.742 -10.531 1.090 -9.210 -9.546 -1.230 -10.060 -1.642 2.976 -9.870 0.837 -8.268 ML 79 77 6 82 6 1 1 153 343 -6.856 -7.202 -0.718 -1.611 -7.052 -4.581 1.072 -0.944 -0.690 -0.401 MR 80 77 6 82 6 1 1 152 342 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 148 338 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 154 343 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 153 343 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 131 155 G C - - MP 84 83 6 88 6 2 2 153 342 -6.215 -15.333 -0.020 -14.110 -14.389 -14.784 -9.531 -8.147 -9.358 -0.096 -10.462 -9.908 -0.307 -10.034 -9.750 3.761 -6.934 -3.921 -0.862 -9.197 -3.981 -8.321 ML 85 83 6 88 6 1 1 150 340 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 150 340 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 147 336 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 152 341 -6.077 -6.340 -0.053 -7.995 -8.772 -8.432 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 152 341 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 133 154 A U - - MP 90 89 6 94 6 2 2 151 340 -15.394 -15.333 -0.000 -14.110 -14.389 -14.784 -11.430 -10.090 -11.625 3.612 -13.758 -14.900 -2.564 -11.668 -11.186 1.679 -11.855 -1.627 -9.143 -12.924 -11.047 -3.712 ML 91 89 6 94 6 1 1 149 339 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 148 338 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 146 336 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 150 340 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 150 339 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 134 153 G C - - MP 96 95 6 100 4 2 2 149 338 -14.613 -14.820 -0.000 -13.234 -13.331 -3.204 -15.683 -7.429 -14.961 -11.112 -9.253 -15.128 -4.449 3.979 -11.512 -3.994 -9.619 -11.580 -11.705 -14.789 ML 97 95 6 100 4 1 1 147 337 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 146 336 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 145 335 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 148 338 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 148 338 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 135 - U - - - ML 102 101 6 104 3 1 1 147 336 -15.523 -0.011 -7.037 -2.514 -10.062 -11.315 1.935 D 103 101 6 104 3 0 0 144 334 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 147 337 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 136 - U - - - ML 105 104 3 107 3 1 1 146 335 -15.512 -0.000 -14.166 -8.697 -4.947 -6.137 1.982 D 106 104 3 107 3 0 0 143 333 -9.999 -5.512 -0.033 IL 107 107 3 107 3 1 1 146 336 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 137 - C - - - ML 108 107 3 110 3 1 1 145 334 -15.512 -0.000 -14.166 -6.548 1.939 -5.182 -2.981 D 109 107 3 110 3 0 0 143 333 -9.999 -0.072 -4.391 IL 110 110 3 110 3 1 1 145 335 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 138 - G - - - ML 111 110 3 113 3 1 1 144 333 -15.523 -0.000 -14.177 -1.385 -11.739 1.855 -10.764 D 112 110 3 113 3 0 0 134 324 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 143 333 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 139 - A - - - ML 114 113 3 116 3 1 1 143 332 -3.785 -0.109 -14.177 1.991 -11.225 -6.370 -6.350 D 115 113 3 116 3 0 0 125 314 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 169 359 -0.140 -3.438 -12.594 0.000 0.000 0.000 0.000 [ MATL 59 ] 151 - g - - - ML 117 116 3 119 3 1 1 8 26 -15.523 -0.001 -11.197 0.153 -1.892 0.857 -0.308 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 152 - C - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -2.460 1.556 -4.150 -0.282 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 16 498 1064 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 0 16 498 1064 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 25 44 -0.000 -13.520 -12.927 -13.567 [ MATP 15 ] 16 34 G C - - MP 127 126 1 131 6 2 6 25 44 -15.394 -15.333 -0.000 -14.110 -14.389 -14.784 -13.352 -4.743 -15.807 -1.428 -14.970 -4.182 -9.253 -15.206 -3.977 3.898 -11.510 -0.834 -9.621 -11.575 -11.709 -14.973 ML 128 126 1 131 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 17 33 C G - - MP 133 132 6 137 6 2 6 23 42 -15.394 -15.333 -0.000 -14.110 -14.389 -14.784 -12.302 -5.243 -11.680 0.106 -5.254 -4.642 3.785 -10.962 -4.478 -8.601 -11.913 -10.746 -0.727 -12.170 -1.350 -10.559 ML 134 132 6 137 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 18 32 G C - - MP 139 138 6 143 6 2 5 21 40 -15.394 -5.439 -0.034 -14.110 -11.286 -14.784 -9.370 -3.040 -9.189 -1.314 -10.277 -9.787 -0.594 -9.865 -5.242 3.302 -9.871 -3.108 2.225 -3.500 -5.113 -6.438 ML 140 138 6 143 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 21 39 -5.958 -0.036 -9.469 -7.636 -8.742 0.000 0.000 0.000 0.000 [ MATP 18 ] 19 30 C G - - MP 145 144 6 149 4 2 5 19 37 -14.612 -14.819 -0.000 -13.234 -12.442 -12.724 -11.759 -8.960 -2.652 -11.903 3.832 -4.129 -3.366 -8.932 -11.983 -11.128 -3.062 -12.276 0.398 -10.665 ML 146 144 6 149 4 1 1 25 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 24 43 -5.261 -4.290 -1.020 -1.218 0.044 -0.841 0.673 -0.293 D 148 144 6 149 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 151 150 6 153 3 1 3 16 34 -15.523 -0.000 -14.177 1.994 -11.435 -5.901 -10.796 D 152 150 6 153 3 0 0 20 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 154 153 3 156 3 1 2 15 33 -15.523 -0.000 -14.177 -3.190 -11.621 1.953 -5.776 D 155 153 3 156 3 0 0 19 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 157 156 3 159 3 1 1 14 32 -15.523 -0.398 -2.053 -4.404 -0.700 -3.455 1.699 D 158 156 3 159 3 0 0 18 36 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - u - - - ML 160 159 3 162 3 1 1 12 31 -3.851 -0.104 -13.779 0.639 -1.018 -8.488 0.960 D 161 159 3 162 3 0 0 11 30 -14.891 -0.002 -9.283 IL 162 162 3 162 3 1 1 12 31 -6.027 -0.026 -8.728 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - G - - - ML 163 162 3 165 3 1 1 11 30 -15.523 -0.000 -14.177 -10.048 -11.810 1.999 -10.799 D 164 162 3 165 3 0 0 16 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - G - - - ML 166 165 3 168 3 1 1 9 28 -15.523 -0.000 -14.177 -4.687 -11.733 1.975 -5.130 D 167 165 3 168 3 0 0 15 33 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - u - - - ML 169 168 3 171 3 1 1 5 8 -1.013 -0.988 -14.177 -1.599 0.515 -1.167 0.844 D 170 168 3 171 3 0 0 3 6 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 4 7 -9.209 -0.003 -11.910 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.990 -11.399 -10.714 -5.217 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 0 481 1048 -15.523 -0.000 -14.177 IL 177 177 2 177 3 1 1 483 1049 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 35 - G - - - ML 178 177 2 180 5 1 1 481 1048 -14.457 -0.000 -14.272 -14.484 -15.376 -1.663 -3.579 1.835 -4.951 D 179 177 2 180 5 0 0 478 1044 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 481 1047 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 36 103 U A - - MP 181 180 3 185 6 2 2 480 1047 -15.394 -15.333 -0.000 -14.110 -14.389 -14.784 -12.442 -12.724 -11.760 -8.961 -10.110 -11.904 1.727 -11.025 -11.863 -8.933 -11.983 -11.128 3.507 -12.276 0.390 -10.665 ML 182 180 3 185 6 1 1 477 1044 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 477 1043 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 471 1037 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 479 1045 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 479 1045 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 37 102 C G - - MP 187 186 6 191 6 2 2 478 1045 -15.394 -15.333 -0.000 -14.110 -14.389 -14.784 -9.698 -9.399 -9.698 1.625 -5.453 -6.820 3.145 -9.216 -9.556 -1.456 -6.442 -2.483 1.719 -9.881 -2.449 -8.275 ML 188 186 6 191 6 1 1 476 1042 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 475 1041 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 470 1036 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 477 1043 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 477 1043 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 38 101 A U - - MP 193 192 6 197 6 2 2 476 1043 -15.394 -15.333 -0.000 -14.110 -14.389 -14.784 -5.282 -4.679 -9.450 3.076 -10.612 -10.101 0.298 -10.103 -9.834 2.576 -10.110 -3.959 -2.100 -9.346 -7.691 -8.396 ML 194 192 6 197 6 1 1 474 1040 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 473 1039 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 468 1035 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 475 1041 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 475 1041 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 100 G C - - MP 199 198 6 203 6 2 2 474 1041 -15.394 -15.333 -0.000 -14.110 -14.389 -14.784 -13.374 -4.040 -15.948 -7.445 -14.980 -5.267 -3.086 -15.290 -2.074 3.950 -11.508 -3.364 -9.624 -11.570 -11.714 -15.189 ML 200 198 6 203 6 1 1 472 1038 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 470 1037 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 467 1033 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 473 1040 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 473 1039 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 99 U U - - MP 205 204 6 209 4 2 2 472 1039 -14.613 -14.820 -0.000 -13.234 -3.237 -10.210 -10.415 -2.773 -1.610 -11.088 -0.332 -4.363 -10.339 0.979 -10.767 -2.660 -1.861 -6.851 -1.588 3.564 ML 206 204 6 209 4 1 1 471 1037 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 468 1034 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 466 1032 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 472 1038 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 471 1038 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - C - - - ML 211 210 6 213 3 1 1 470 1037 -15.523 -0.000 -14.177 -9.575 1.979 -5.165 -5.192 D 212 210 6 213 3 0 0 464 1030 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 470 1037 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - U - - - ML 214 213 3 216 3 1 1 469 1036 -15.523 -0.000 -14.177 -5.053 -6.175 -9.690 1.984 D 215 213 3 216 3 0 0 460 1027 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 469 1035 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - u - - - ML 217 216 3 219 3 1 1 468 1035 -15.523 -0.000 -14.177 0.004 -0.004 -0.005 0.005 D 218 216 3 219 3 0 0 456 1022 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 468 1034 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - u - - - ML 220 219 3 222 3 1 1 467 1034 -15.523 -0.000 -14.177 0.004 -0.004 -0.005 0.005 D 221 219 3 222 3 0 0 448 1014 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 466 1032 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - u - - - ML 223 222 3 225 3 1 1 466 1033 -15.523 -0.000 -14.177 0.004 -0.004 -0.005 0.005 D 224 222 3 225 3 0 0 433 999 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 464 1030 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - A - - - ML 226 225 3 228 3 1 1 465 1032 -1.533 -0.612 -14.177 1.911 -10.044 -2.349 -4.614 D 227 225 3 228 3 0 0 365 932 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 497 1063 -0.047 -4.966 -16.354 0.000 0.000 0.000 0.000 [ MATL 41 ] 98 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.971 -5.123 -6.576 -4.613 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Met ACC euk-Met-r2-031616 LENG 73 MAXL 528 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 11:21:09 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Met-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Met-r2-031616.sto NSEQ 713 EFFN 8.690014 CKSUM 1813572260 STATS LOCAL MSV -8.4515 0.71883 STATS LOCAL VITERBI -9.0448 0.71883 STATS LOCAL FORWARD -3.7564 0.71883 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49616 1.40028 1.20492 1.47070 1.38629 1.38629 1.38629 1.38629 0.04285 3.86455 3.86455 1.46634 0.26236 0.00000 * 1 1.78678 2.51501 0.41829 2.37015 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01842 4.69666 4.69666 1.46634 0.26236 1.09861 0.40547 2 2.32728 0.91064 1.38405 1.38785 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01842 4.69666 4.69666 1.46634 0.26236 1.09861 0.40547 3 2.45421 0.66044 1.70747 1.53193 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04600 4.69666 3.32885 1.46634 0.26236 1.09861 0.40547 4 1.85619 1.54633 1.47815 0.90970 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02822 4.66959 3.99271 1.46634 0.26236 1.77948 0.18480 5 2.33450 1.05079 1.66123 1.01177 6 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03895 3.54953 4.66073 0.56426 0.84114 1.93072 0.15670 6 1.91957 1.06582 1.31857 1.42143 8 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01910 4.66073 4.66073 1.46634 0.26236 0.34261 1.23758 7 2.08715 1.99373 0.93545 1.05738 9 g - - ( 1.38629 1.38629 1.38629 1.38629 0.04345 3.39922 4.69690 1.06966 0.42026 1.09861 0.40547 8 4.21084 3.95878 4.76421 0.04338 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 9 0.68673 3.43357 0.86956 3.09282 15 A - - , 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 10 2.79156 3.75693 0.11525 3.72231 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 11 2.26701 0.47448 2.41203 1.68992 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 12 2.03448 2.31791 0.59397 1.52031 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01871 4.69690 4.66605 1.46634 0.26236 1.09861 0.40547 13 3.44711 0.26191 3.12494 1.86665 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69662 4.69662 1.46634 0.26236 1.07815 0.41585 14 0.03492 4.73803 4.18470 4.57188 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 15 3.23643 4.63585 0.06830 4.07346 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 16 2.78070 1.90315 3.09200 0.29639 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.23732 4.69690 1.59879 1.46634 0.26236 1.09861 0.40547 17 1.08585 1.80683 2.46053 0.88474 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.07777 2.75645 4.48245 0.32446 1.28345 0.08642 2.49139 18 4.20813 5.25311 0.02948 4.71674 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 19 3.66750 4.84243 0.05075 4.13145 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 20 1.80379 1.18087 2.03765 0.92135 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.53687 0.90066 4.69690 0.04432 3.13839 1.09861 0.40547 21 0.03804 4.61667 4.34123 4.23929 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 22 2.44127 3.39178 0.17891 3.14376 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.03754 3.58570 4.69690 0.56426 0.84114 1.09861 0.40547 23 1.63015 0.64849 2.15837 1.79725 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 24 1.94614 2.57789 0.41550 2.11006 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 25 3.81301 0.15431 3.64935 2.35491 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 26 2.22578 3.19004 0.21651 3.08964 35 G - - , 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 27 3.67963 1.35144 3.46550 0.37886 36 U - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 28 1.76563 0.83336 2.10196 1.30151 37 c - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 29 1.02417 2.29664 0.77852 2.51057 38 g - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 30 3.15889 3.81079 0.08770 3.94471 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 31 2.13050 1.66336 1.62723 0.70270 40 u - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 32 4.08137 0.06450 4.19148 3.49161 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 33 3.41949 3.38565 4.08838 0.08703 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 34 1.28945 1.49548 1.51196 1.27311 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 35 1.28945 1.49548 1.51196 1.27311 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 36 1.28945 1.49548 1.51196 1.27311 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 37 0.12025 3.80051 2.80811 3.48587 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.34964 1.25200 4.69690 3.42899 0.03296 1.09861 0.40547 38 0.06730 3.90383 3.85605 3.73950 98 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 39 1.85093 1.76206 1.51296 0.79637 99 u - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 40 3.74887 0.11140 3.71944 2.85382 100 C - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 41 2.74086 0.85168 2.16958 0.92998 101 c - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 42 1.45756 2.30782 0.75526 1.62033 102 g - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 43 0.50665 3.62909 1.08325 3.42784 103 A - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 44 0.07576 3.82812 3.59618 3.73894 104 A - - , 1.38629 1.38629 1.38629 1.38629 0.04304 4.04902 3.70155 0.84295 0.56289 1.09861 0.40547 45 2.96998 4.13719 0.09516 3.75080 106 G - - , 1.38629 1.38629 1.38629 1.38629 0.01871 4.68122 4.68122 1.46634 0.26236 0.55342 0.85562 46 2.65954 4.20045 0.11663 3.68422 125 G - - , 1.38629 1.38629 1.38629 1.38629 0.02929 3.92505 4.69690 0.75797 0.63227 1.09861 0.40547 47 2.90768 2.68600 3.70285 0.15948 127 U - - , 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 48 3.68195 0.11037 3.96313 2.80805 128 C - - , 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 49 2.02099 1.57040 0.58048 2.30376 129 G - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 50 1.61770 1.48500 1.91631 0.84865 130 u - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 51 1.98275 2.50201 0.36300 2.46745 131 G - - < 1.38629 1.38629 1.38629 1.38629 0.02953 3.91315 4.69690 0.75025 0.63913 1.09861 0.40547 52 0.45814 3.35522 1.21908 3.29316 133 A - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 53 3.41022 4.54400 0.05666 4.47240 134 G - - < 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 54 2.77509 3.25299 3.83925 0.13069 135 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02461 4.69690 4.18769 1.46634 0.26236 1.09861 0.40547 55 3.43889 3.19940 3.84355 0.09905 136 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01853 4.69083 4.69083 1.46634 0.26236 1.29855 0.31873 56 3.74580 0.09915 4.04727 2.93175 137 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01853 4.69083 4.69083 1.46634 0.26236 0.78934 0.60540 57 2.37625 4.20948 0.13817 3.84929 138 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 58 0.03807 4.63816 4.18345 4.38771 139 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07944 2.69940 4.69690 2.34432 0.10083 1.09861 0.40547 59 1.26145 2.14147 1.01313 1.44310 151 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01872 4.69690 4.66476 1.46634 0.26236 1.09861 0.40547 60 2.36566 0.46597 3.14827 1.44537 152 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69661 4.69661 1.46634 0.26236 1.07730 0.41630 61 4.44306 0.06848 4.41457 3.16229 153 C - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 62 3.61319 1.36937 3.19099 0.38915 154 U - - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69690 4.69690 1.46634 0.26236 1.09861 0.40547 63 2.70004 0.41175 2.34152 1.74797 155 C - - > 1.38629 1.38629 1.38629 1.38629 0.01883 4.69690 4.65334 1.46634 0.26236 1.09861 0.40547 64 1.05754 1.99608 1.19001 1.54832 156 a - - > 1.38629 1.38629 1.38629 1.38629 0.03287 3.76310 4.69650 0.65918 0.72831 1.06978 0.42020 65 2.55940 0.65034 1.45116 1.79287 158 C - - > 1.38629 1.38629 1.38629 1.38629 0.03419 3.70968 4.69690 0.78357 0.61022 1.09861 0.40547 66 1.13103 1.10400 1.83228 1.68358 161 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02745 4.69690 4.02002 1.46634 0.26236 1.09861 0.40547 67 1.58525 1.43562 0.96791 1.73014 162 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03788 3.57684 4.68804 0.56426 0.84114 1.37819 0.29040 68 1.15395 1.83740 0.92774 2.04073 164 g - - ) 1.38629 1.38629 1.38629 1.38629 0.04026 4.68779 3.49819 1.46634 0.26236 0.70131 0.68505 69 1.63263 1.58675 0.86690 1.71622 165 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01897 4.66777 4.66777 1.46634 0.26236 1.25809 0.33435 70 1.73967 1.82984 0.58816 2.21978 166 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01888 4.67248 4.67248 1.46634 0.26236 1.56519 0.23452 71 1.55320 1.50001 0.82939 2.04806 167 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03847 3.56176 4.67248 0.56450 0.84082 0.54145 0.87204 72 2.40577 0.47235 2.47075 1.60075 170 C - - ) 1.38629 1.38629 1.38629 1.38629 0.06669 2.89463 4.68901 1.02238 0.44588 1.09861 0.40547 73 0.20197 3.12414 2.48378 2.89176 175 A - - : 1.38629 1.38629 1.38629 1.38629 0.00932 4.67978 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Phe ACC euk-Phe-r2-031616 STATES 233 NODES 62 CLEN 73 W 572 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 11:52:49 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Phe-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Phe-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Phe-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Phe-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Phe-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Phe-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Phe-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 676 EFFN 676.000000 CKSUM 1592551811 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7601 0.71889 ECMLC 0.75965 -6.24406 1.95086 1600000 606422 0.001979 ECMGC 0.30277 -50.38853 -36.00887 1600000 31105 0.012860 ECMLI 0.74537 -5.91259 2.32801 1600000 558157 0.002150 ECMGI 0.33505 -45.40599 -32.49603 1600000 30241 0.013227 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 572 1183 -14.331 -15.576 -0.009 -7.319 IL 1 1 2 1 4 20 44 574 1185 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 46 575 1186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 193 - A - - MR 3 2 3 5 5 24 49 574 1185 -14.371 -0.001 -14.187 -11.510 -15.290 1.912 -4.015 -2.769 -5.179 D 4 2 3 5 5 18 41 567 1178 -7.863 -3.218 -5.490 -6.920 -0.221 IR 5 5 3 5 5 22 46 574 1185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 192 G C - - MP 6 5 3 10 6 23 48 573 1184 -15.309 -15.248 -0.046 -14.025 -7.944 -5.184 -10.842 -2.979 -10.829 -2.725 -11.875 -3.787 -4.121 -11.462 -3.136 3.913 -5.471 -2.371 -7.135 -2.713 -8.918 -4.639 ML 7 5 3 10 6 21 45 571 1182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 21 45 571 1182 -7.310 -6.039 -1.122 -6.017 -1.151 -4.231 0.002 0.371 -0.693 0.121 D 9 5 3 10 6 18 40 566 1178 -12.135 -10.834 -6.631 -7.313 -7.330 -0.034 IL 10 10 5 10 6 21 46 572 1183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 22 46 572 1183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 191 C G - - MP 12 11 6 16 6 27 50 571 1182 -15.263 -6.113 -0.028 -13.979 -7.801 -14.654 -10.992 -3.591 -4.337 -6.749 -3.631 -4.647 3.791 -4.342 -2.859 -0.279 -4.420 -8.555 -2.480 -11.062 -0.621 -9.455 ML 13 11 6 16 6 21 44 569 1180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 22 45 569 1180 -9.128 -7.857 -3.766 -7.835 -0.151 -6.049 -2.154 -3.454 1.826 -2.840 D 15 11 6 16 6 18 40 566 1178 -14.466 -13.164 -8.961 -9.643 -9.661 -0.007 IL 16 16 5 16 6 21 46 570 1181 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 24 49 571 1182 -1.070 -0.955 -9.647 -7.814 -8.920 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 188 C G - - MP 18 17 6 22 6 25 48 569 1180 -15.257 -7.152 -0.025 -13.972 -6.674 -14.647 -9.540 -9.247 -4.709 -1.187 -1.357 -10.387 3.004 -9.069 -9.403 1.664 -5.661 -4.028 1.629 -4.853 -0.507 -5.587 ML 19 17 6 22 6 20 42 567 1178 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 21 44 568 1179 -9.998 -8.727 -4.636 -8.705 -0.080 -6.919 0.948 -2.533 0.725 -2.028 D 21 17 6 22 6 18 40 566 1177 -14.466 -13.164 -8.961 -9.643 -9.661 -0.007 IL 22 22 5 22 6 21 45 568 1179 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 22 46 568 1179 -4.394 -0.110 -7.905 -6.073 -7.179 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 186 g c - - MP 24 23 6 28 6 24 46 567 1178 -15.243 -15.182 -0.016 -6.511 -14.238 -14.633 -9.217 -1.183 -9.035 -0.493 -3.149 -9.631 -2.607 -9.725 -4.402 2.975 -5.702 1.486 -2.009 -8.889 1.841 -8.000 ML 25 23 6 28 6 18 40 565 1176 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 20 43 567 1178 -1.183 -9.721 -5.629 -9.699 -0.908 -7.912 -5.123 1.963 -5.634 -4.217 D 27 23 6 28 6 18 40 566 1177 -14.466 -13.164 -8.961 -9.643 -0.042 -5.293 IL 28 28 5 28 6 20 44 566 1177 -5.386 -5.649 -0.087 -7.304 -8.080 -7.741 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 41 566 1177 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 185 A U - - MP 30 29 6 34 6 22 44 565 1176 -7.118 -15.179 -0.011 -13.955 -14.235 -14.630 -5.317 -4.747 -2.127 3.020 -7.249 -8.287 2.215 -5.946 -0.003 -0.043 -4.431 -2.725 -0.713 -7.581 -3.536 -4.100 ML 31 29 6 34 6 20 42 564 1175 -9.733 -10.079 -2.162 -0.381 -9.929 -7.459 -1.420 -0.915 1.513 -2.042 MR 32 29 6 34 6 20 42 567 1178 -12.207 -10.936 -6.845 -10.914 -0.017 -9.128 -6.533 -5.930 -7.435 1.988 D 33 29 6 34 6 15 37 559 1170 -9.414 -8.112 -3.909 -4.591 -4.609 -0.241 IL 34 34 5 34 6 20 42 564 1175 -5.149 -5.412 -0.103 -7.067 -7.844 -7.504 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 41 564 1175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 184 a u - - MP 36 35 6 40 6 20 42 563 1174 -15.243 -15.182 -0.000 -13.958 -14.238 -14.633 -2.756 -5.905 -7.055 2.881 -9.525 -9.751 -0.773 -6.718 -9.432 1.678 -9.741 -3.723 2.148 -9.022 -3.148 -4.684 ML 37 35 6 40 6 19 41 563 1174 -0.166 -9.780 -4.494 -4.189 -9.630 -7.159 1.929 -4.250 -3.729 -3.961 MR 38 35 6 40 6 19 42 566 1177 -12.207 -10.936 -6.845 -10.914 -0.017 -9.128 -6.533 -5.930 -7.435 1.988 D 39 35 6 40 6 15 37 558 1169 -9.414 -8.112 -3.909 -4.591 -4.609 -0.241 IL 40 40 5 40 6 19 41 562 1173 -5.381 -5.644 -0.087 -7.299 -8.075 -7.735 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 40 562 1173 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 10 183 A U - - MP 42 41 6 46 4 18 40 561 1172 -14.473 -4.681 -0.058 -13.094 -5.234 -9.952 -11.487 3.396 -13.625 -14.781 -9.084 -11.530 -11.047 -0.314 -4.767 -2.212 2.132 -12.792 -10.915 -10.086 ML 43 41 6 46 4 17 38 560 1171 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 19 41 565 1176 -0.033 -9.257 -7.124 -6.185 -4.593 -0.255 -5.377 1.631 D 45 41 6 46 4 15 37 558 1169 -4.912 -4.593 -2.609 -0.393 IL 46 46 5 46 4 19 40 564 1175 -0.332 -9.849 -2.292 -12.334 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 40 564 1175 -0.310 -2.376 -10.522 0.000 0.000 0.000 0.000 [ MATL 9 ] 17 - U - - - ML 48 47 6 50 3 16 38 559 1170 -15.446 -0.000 -14.100 -5.835 -6.205 -5.221 1.979 D 49 47 6 50 3 14 36 557 1168 -6.641 -2.154 -0.386 IL 50 50 3 50 3 16 38 559 1170 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 18 - A - - - ML 51 50 3 53 2 15 37 558 1169 -16.101 -0.000 1.897 -6.459 -3.042 -2.817 D 52 50 3 53 2 14 36 557 1168 -8.478 -0.004 IL 53 53 3 53 2 15 37 558 1169 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 14 36 557 1168 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 2 154 327 -15.446 -0.000 -14.100 IL 56 56 2 56 3 1 1 155 328 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 123 - A - - - ML 57 56 2 59 3 1 2 154 327 -3.406 -0.144 -11.144 1.754 -3.871 -0.971 -4.373 D 58 56 2 59 3 0 0 143 315 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 166 338 -0.195 -2.984 -12.437 0.000 0.000 0.000 0.000 [ MATL 45 ] 132 - G - - - ML 60 59 3 62 3 1 2 150 323 -3.405 -0.143 -14.099 -4.018 -1.389 1.729 -2.045 D 61 59 3 62 3 0 0 127 299 -6.884 -0.789 -1.276 IL 62 62 3 62 3 1 2 171 344 -0.154 -3.305 -12.758 0.000 0.000 0.000 0.000 [ MATL 46 ] 151 - G - - - ML 63 62 3 65 3 1 1 49 93 -15.446 -0.003 -8.895 -4.514 -6.403 1.958 -4.096 D 64 62 3 65 3 0 0 48 91 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 50 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 152 - U - - - ML 66 65 3 68 3 1 1 48 92 -15.443 -0.000 -14.097 -5.233 -3.242 -9.171 1.951 D 67 65 3 68 3 0 0 47 91 -8.305 -0.247 -2.696 IL 68 68 3 68 3 1 1 49 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 153 - C - - - ML 69 68 3 71 5 1 1 47 91 -14.380 -0.000 -14.195 -14.407 -15.299 -2.322 1.864 -5.646 -2.846 D 70 68 3 71 5 0 0 45 89 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 47 91 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 154 176 C G - - MP 72 71 3 76 6 2 2 46 90 -15.318 -7.242 -0.010 -14.034 -14.313 -14.708 -9.641 -9.340 -7.654 2.123 -2.009 -10.478 3.305 -3.050 -9.498 -0.002 -7.707 -3.018 -3.105 -9.822 -3.084 -5.775 ML 73 71 3 76 6 1 1 44 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 44 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 40 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 45 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 45 89 -4.373 -0.112 -7.884 -6.051 -7.157 0.000 0.000 0.000 0.000 [ MATP 50 ] 155 174 C G - - MP 78 77 6 82 6 2 2 44 88 -5.734 -15.257 -0.030 -9.277 -14.313 -14.708 -12.343 -12.612 -11.670 -8.836 -3.472 -5.111 3.656 -3.723 -11.771 -3.184 -11.896 -10.987 1.337 -12.183 -0.829 -10.572 ML 79 77 6 82 6 1 1 42 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 41 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 37 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 52 95 -0.611 -8.232 -1.559 -9.887 -10.663 -10.323 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 159 173 u g - - MP 84 83 6 88 6 2 2 26 46 -6.121 -15.255 -0.021 -14.031 -14.311 -14.706 -4.487 -9.378 -6.361 -3.195 -8.527 -10.502 2.334 -9.183 -9.528 1.503 -6.184 -6.947 0.282 -9.854 2.662 -1.394 ML 85 83 6 88 6 1 1 24 44 -7.588 -7.934 -0.389 -2.343 -7.784 -5.313 -0.832 -0.952 -1.520 1.363 MR 86 83 6 88 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 29 48 -1.361 -7.044 -0.743 -8.700 -9.476 -9.136 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 162 172 G C - - MP 90 89 6 94 6 2 2 19 38 -15.318 -15.257 -0.000 -14.034 -14.313 -14.708 -6.104 -5.482 -9.108 1.201 -10.239 -5.078 -5.305 -4.047 -3.346 3.050 -9.793 -0.888 2.188 -5.288 -4.720 -8.074 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 163 171 G C - - MP 96 95 6 100 4 2 2 17 36 -14.536 -14.743 -0.001 -11.630 -13.301 -5.054 -15.892 -7.370 -14.906 -3.441 -9.178 -15.227 -3.242 3.965 -4.666 -4.033 -9.549 -4.373 -11.639 -15.146 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 164 - U - - - ML 102 101 6 104 3 1 1 15 33 -15.446 -0.000 -14.100 -6.442 -5.418 -6.363 1.983 D 103 101 6 104 3 0 0 18 37 -6.597 -1.042 -0.988 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 165 - U - - - ML 105 104 3 107 3 1 1 13 32 -15.446 -0.000 -14.100 -6.297 -6.453 -4.953 1.980 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 166 - C - - - ML 108 107 3 110 3 1 1 12 31 -15.446 -0.000 -14.100 -10.730 1.968 -11.163 -3.510 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 167 - G - - - ML 111 110 3 113 3 1 1 11 29 -15.446 -0.000 -14.100 0.458 -6.203 1.374 -5.541 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 168 - A - - - ML 114 113 3 116 3 1 1 10 28 -15.446 -0.000 -14.100 1.986 -6.685 -5.151 -10.448 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 169 - U - - - ML 117 116 3 119 3 1 1 8 26 -15.446 -0.000 -14.100 -2.148 -1.163 -4.706 1.718 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 170 - C - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -4.751 1.918 -6.428 -2.537 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 16 532 1143 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 0 16 532 1143 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 26 44 -0.000 -13.444 -12.851 -13.491 [ MATP 15 ] 19 38 G C - - MP 127 126 1 131 6 2 6 26 44 -15.318 -15.257 -0.000 -14.034 -14.313 -14.708 -13.030 -3.647 -14.614 -2.612 -14.696 -4.035 -9.109 -14.407 -11.227 3.898 -11.438 -0.504 -9.448 -4.782 -11.504 -4.696 ML 128 126 1 131 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 20 37 C G - - MP 133 132 6 137 6 2 6 24 42 -15.318 -15.257 -0.000 -14.034 -14.313 -14.708 -12.366 -12.647 -4.079 -8.884 -3.864 -4.878 3.956 -5.014 -11.787 -8.856 -5.004 -11.052 -3.155 -12.199 -2.834 -10.588 ML 134 132 6 137 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 21 36 U A - - MP 139 138 6 143 6 2 5 22 40 -15.318 -15.257 -0.000 -14.034 -14.313 -14.708 -3.761 -12.286 -11.675 -8.542 -4.225 -11.898 -5.819 -10.977 -11.740 -2.581 -11.899 -10.302 3.964 -6.156 -7.808 -4.165 ML 140 138 6 143 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 22 35 C G - - MP 145 144 6 149 4 2 3 20 38 -6.661 -14.743 -0.015 -13.157 -12.366 -12.647 -4.374 -8.884 -2.735 -5.079 3.951 -4.152 -11.787 -8.856 -5.076 -11.052 -6.766 -12.199 -2.298 -10.588 ML 146 144 6 149 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 22 41 -4.901 -5.585 -4.332 -0.158 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 24 - A - - - ML 151 150 6 153 3 1 1 16 34 -7.197 -0.010 -14.086 1.967 -5.911 -4.022 -6.503 D 152 150 6 153 3 0 0 16 35 -0.085 -5.796 -4.675 IL 153 153 3 153 3 1 1 16 34 -4.419 -0.080 -7.119 0.000 0.000 0.000 0.000 [ MATL 20 ] 26 - G - - - ML 154 153 3 156 3 1 1 15 33 -15.446 -0.000 -14.100 -3.709 -2.833 1.906 -4.824 D 155 153 3 156 3 0 0 19 37 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 27 - U - - - ML 157 156 3 159 3 1 1 13 32 -15.446 -0.016 -6.480 -3.624 -1.895 -5.733 1.860 D 158 156 3 159 3 0 0 18 36 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 28 - U - - - ML 160 159 3 162 3 1 1 12 30 -6.560 -0.015 -14.084 -5.624 -3.520 -9.232 1.960 D 161 159 3 162 3 0 0 13 31 -10.454 -0.052 -4.846 IL 162 162 3 162 3 1 1 13 31 -3.858 -0.120 -6.559 0.000 0.000 0.000 0.000 [ MATL 23 ] 30 - G - - - ML 163 162 3 165 3 1 1 11 29 -15.446 -0.000 -14.100 -5.337 -5.491 1.983 -10.686 D 164 162 3 165 3 0 0 16 34 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 31 - G - - - ML 166 165 3 168 3 1 1 9 28 -15.446 -0.000 -14.100 -5.387 -11.714 1.985 -5.830 D 167 165 3 168 3 0 0 15 33 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 32 - G - - - ML 169 168 3 171 3 1 1 5 9 -2.732 -0.235 -14.100 -3.719 -4.371 1.697 -0.660 D 170 168 3 171 3 0 0 4 7 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 5 8 -7.429 -0.010 -10.129 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.785 -1.040 -5.495 -4.454 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 0 516 1127 -6.215 -0.020 -14.100 IL 177 177 2 177 3 1 1 518 1129 -1.032 -0.982 -7.745 0.000 0.000 0.000 0.000 [ MATL 29 ] 41 - G - - - ML 178 177 2 180 5 1 1 516 1127 -7.029 -0.011 -14.195 -14.407 -15.299 -0.950 -4.872 1.756 -3.803 D 179 177 2 180 5 0 0 513 1124 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 516 1127 -4.524 -0.100 -6.203 -8.035 -7.309 0.000 0.000 0.000 0.000 [ MATP 30 ] 43 122 U A - - MP 181 180 3 185 6 2 2 515 1126 -15.318 -15.257 -0.002 -14.034 -9.771 -14.708 -7.144 -9.324 -2.486 -2.080 -4.551 -10.465 1.110 -9.141 -4.654 -1.712 -9.993 -6.891 3.414 -4.555 1.193 -4.892 ML 182 180 3 185 6 1 1 512 1123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 512 1123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 506 1117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 514 1125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 514 1125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 44 121 U A - - MP 187 186 6 191 6 2 2 513 1124 -15.316 -6.388 -0.018 -14.032 -14.312 -14.707 -3.206 -9.315 -9.613 -0.298 -5.300 -10.457 2.587 -9.134 -5.737 -2.908 -5.926 -4.982 3.039 -4.936 -0.802 -5.875 ML 188 186 6 191 6 1 1 510 1121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 511 1122 -7.942 -6.671 -0.619 -6.649 -1.783 -4.862 1.354 -1.342 -1.072 -0.803 D 190 186 6 191 6 0 0 504 1115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 512 1123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 512 1123 -5.052 -0.069 -8.563 -6.731 -7.837 0.000 0.000 0.000 0.000 [ MATP 32 ] 45 119 A U - - MP 193 192 6 197 6 2 2 511 1122 -15.318 -15.257 -0.000 -14.034 -14.313 -14.708 -11.761 -4.517 -7.053 3.694 -10.654 -12.419 1.118 -11.111 -11.390 -1.094 -11.787 -8.357 -3.609 -12.315 -2.069 -4.562 ML 194 192 6 197 6 1 1 508 1120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 507 1118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 503 1114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 510 1121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 510 1121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 46 118 G C - - MP 199 198 6 203 6 2 2 509 1120 -15.318 -7.071 -0.011 -14.034 -14.313 -14.708 -13.257 -3.040 -5.762 -5.661 -14.882 -2.988 -9.175 -15.061 -11.244 3.941 -4.983 -1.796 -9.540 -4.950 -11.626 -14.731 ML 200 198 6 203 6 1 1 507 1118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 505 1116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 501 1113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 508 1119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 508 1119 -4.502 -0.102 -8.014 -6.181 -7.287 0.000 0.000 0.000 0.000 [ MATP 34 ] 47 116 A U - - MP 205 204 6 209 4 2 2 507 1118 -14.536 -14.743 -0.000 -13.157 -5.678 -4.004 -11.538 3.964 -13.660 -14.825 -9.124 -4.127 -11.112 -6.679 -11.781 -4.308 -4.689 -12.854 -3.642 -3.712 ML 206 204 6 209 4 1 1 505 1116 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 502 1113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 500 1112 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 506 1118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 506 1117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 48 - C - - - ML 211 210 6 213 3 1 1 505 1116 -15.446 -0.000 -14.100 -5.354 1.933 -5.612 -2.881 D 212 210 6 213 3 0 0 498 1109 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 505 1116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 49 - U - - - ML 214 213 3 216 3 1 1 504 1115 -15.446 -0.000 -14.100 -6.310 -4.318 -9.487 1.977 D 215 213 3 216 3 0 0 495 1106 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 504 1115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 50 - u - - - ML 217 216 3 219 3 1 1 503 1114 -15.446 -0.000 -14.100 0.004 -0.004 -0.005 0.005 D 218 216 3 219 3 0 0 490 1101 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 502 1113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 51 - u - - - ML 220 219 3 222 3 1 1 502 1113 -15.446 -0.000 -14.100 0.004 -0.004 -0.005 0.005 D 221 219 3 222 3 0 0 481 1093 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 501 1112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 52 - u - - - ML 223 222 3 225 3 1 1 501 1112 -15.446 -0.000 -14.100 0.004 -0.004 -0.005 0.005 D 224 222 3 225 3 0 0 465 1076 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 499 1110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 53 - G - - - ML 226 225 3 228 3 1 1 500 1111 -1.617 -0.569 -14.100 -1.655 -4.379 1.849 -4.969 D 227 225 3 228 3 0 0 394 1005 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 536 1147 -0.043 -5.074 -16.302 0.000 0.000 0.000 0.000 [ MATL 41 ] 115 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.921 -3.856 -5.249 -3.086 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Phe ACC euk-Phe-r2-031616 LENG 73 MAXL 556 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 11:52:50 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Phe-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Phe-r2-031616.sto NSEQ 676 EFFN 5.789261 CKSUM 1592551811 STATS LOCAL MSV -8.3531 0.71889 STATS LOCAL VITERBI -9.0560 0.71889 STATS LOCAL FORWARD -3.7709 0.71889 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47370 1.45203 1.25283 1.38176 1.38629 1.38629 1.38629 1.38629 0.02431 4.42205 4.42205 1.46634 0.26236 0.00000 * 1 1.93717 2.60356 0.36409 2.44128 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04860 4.42205 3.34034 1.46634 0.26236 1.09861 0.40547 2 2.24665 0.62387 1.91992 1.55229 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02825 4.39858 4.16280 1.46634 0.26236 1.59933 0.22569 3 2.09963 0.96446 1.57783 1.23826 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.03236 4.39531 3.93676 1.46634 0.26236 1.23672 0.34296 4 1.78064 2.12155 0.68123 1.58168 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02500 4.39447 4.39447 1.46634 0.26236 1.66451 0.20984 5 1.22433 1.35407 1.52498 1.46865 6 a - - ( 1.38629 1.38629 1.38629 1.38629 0.03038 4.04139 4.39447 1.08322 0.41325 1.66451 0.20984 6 1.26588 1.78676 1.23382 1.34966 8 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03150 3.98102 4.39447 1.02909 0.44213 0.47572 0.97137 7 0.91124 2.05027 1.54611 1.36180 10 a - - ( 1.38629 1.38629 1.38629 1.38629 0.05280 3.23348 4.42227 1.41515 0.27825 1.09861 0.40547 8 2.98007 2.92007 3.41896 0.14788 17 U - - , 1.38629 1.38629 1.38629 1.38629 0.02420 4.42656 4.42656 1.46634 0.26236 1.09861 0.40547 9 0.18075 3.19405 2.80417 2.75214 18 A - - , 1.38629 1.38629 1.38629 1.38629 0.02420 4.42656 4.42656 1.46634 0.26236 1.09861 0.40547 10 2.03041 2.73633 0.31627 2.58963 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 11 4.79068 0.03790 4.68939 3.92748 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 12 4.67984 3.89231 4.51238 0.04150 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 13 4.77656 0.03715 4.68207 3.97470 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 14 0.09303 3.73979 3.27893 3.59705 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03682 3.72160 4.42673 0.80264 0.59447 1.09861 0.40547 15 2.59695 3.06562 0.18525 3.03695 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 16 2.62301 2.32138 3.21389 0.23689 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03268 4.42673 3.90239 1.46634 0.26236 1.09861 0.40547 17 3.05684 2.79628 3.62230 0.14479 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03242 3.91985 4.41846 0.95727 0.48441 0.78111 0.61230 18 3.38519 4.21892 0.06970 3.97691 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 19 3.50351 4.54857 0.06076 4.00206 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 20 2.25295 2.85287 0.37000 1.92075 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.14514 2.09438 4.42673 0.18397 1.78357 1.09861 0.40547 21 0.28395 2.17416 2.88600 2.55504 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 22 4.14055 4.83096 0.03406 4.64695 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 23 0.04754 4.65085 3.69859 4.41346 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 24 4.08920 4.80883 0.03519 4.63870 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 25 2.86673 0.38513 2.56156 1.68435 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03442 3.82194 4.42673 1.09140 0.40909 1.09861 0.40547 26 1.86736 3.09940 0.30913 2.71345 41 G - - , 1.38629 1.38629 1.38629 1.38629 0.02998 4.04078 4.42673 1.05340 0.42886 1.09861 0.40547 27 2.11482 1.38458 1.95436 0.71895 43 u - - < 1.38629 1.38629 1.38629 1.38629 0.02503 4.42673 4.36069 1.46634 0.26236 1.09861 0.40547 28 2.08176 1.07808 2.00583 0.91506 44 u - - < 1.38629 1.38629 1.38629 1.38629 0.02422 4.42592 4.42592 1.46634 0.26236 1.05507 0.42797 29 0.76748 1.64306 1.63528 1.91370 45 a - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 30 2.06440 2.73149 0.30774 2.61903 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 31 0.03595 4.87425 4.00921 4.65439 47 A - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 32 3.27858 0.14361 3.78604 2.61172 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 33 3.21846 2.98489 3.77517 0.12047 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 34 1.27626 1.51294 1.53206 1.25677 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 35 1.27626 1.51294 1.53206 1.25677 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 36 1.27626 1.51294 1.53206 1.25677 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 37 2.18536 3.25706 0.22468 2.98998 53 G - - _ 1.38629 1.38629 1.38629 1.38629 0.30764 1.37489 4.42673 3.49577 0.03079 1.09861 0.40547 38 0.16459 3.05467 3.11724 2.80767 115 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 39 4.93591 4.30606 4.71911 0.03004 116 U - - > 1.38629 1.38629 1.38629 1.38629 0.02987 4.04692 4.42673 1.05891 0.42592 1.09861 0.40547 40 2.89348 0.35732 2.57082 1.78027 118 C - - > 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 41 2.19652 1.77402 1.49001 0.70564 119 u - - > 1.38629 1.38629 1.38629 1.38629 0.03332 3.87175 4.42673 0.91245 0.51339 1.09861 0.40547 42 1.05327 2.18411 0.94277 1.90327 121 g - - > 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 43 0.92467 2.12107 1.07872 1.94209 122 a - - > 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 44 0.31337 2.82748 1.98902 2.61693 123 A - - , 1.38629 1.38629 1.38629 1.38629 0.09860 2.50522 4.40322 2.03574 0.13993 1.09861 0.40547 45 2.22848 2.33067 0.37192 2.24743 132 G - - , 1.38629 1.38629 1.38629 1.38629 0.09832 2.50493 4.42645 2.24827 0.11158 1.08300 0.41337 46 3.12553 4.02296 0.09715 3.48129 151 G - - , 1.38629 1.38629 1.38629 1.38629 0.02575 4.42673 4.30771 1.46634 0.26236 1.09861 0.40547 47 2.99293 2.72731 3.56926 0.15515 152 U - - , 1.38629 1.38629 1.38629 1.38629 0.02423 4.42522 4.42522 1.46634 0.26236 1.02086 0.44673 48 2.61996 0.22616 3.50137 2.30813 153 C - - , 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 49 1.59463 0.85306 1.82088 1.56531 154 c - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 50 2.73180 0.52624 2.44449 1.35749 155 C - - < 1.38629 1.38629 1.38629 1.38629 0.03862 3.65217 4.42673 1.23897 0.34204 1.09861 0.40547 51 2.16139 1.17571 1.60067 0.98224 159 u - - < 1.38629 1.38629 1.38629 1.38629 0.03519 3.78877 4.42673 1.00866 0.45367 1.09861 0.40547 52 1.67757 2.20622 0.71793 1.53573 162 g - - < 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 53 2.64849 3.32969 0.15743 3.24169 163 G - - < 1.38629 1.38629 1.38629 1.38629 0.02435 4.42673 4.41408 1.46634 0.26236 1.09861 0.40547 54 3.09532 2.97342 3.57761 0.13277 164 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42658 4.42658 1.46634 0.26236 1.09019 0.40970 55 2.99723 2.93029 3.40201 0.14689 165 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 56 3.84395 0.08957 4.35408 2.96791 166 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 57 1.12010 3.06333 0.58031 2.69864 167 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 58 0.06747 4.03260 3.59829 3.90487 168 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 59 2.22692 2.00824 2.92563 0.35057 169 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 60 3.17905 0.15888 3.78051 2.49542 170 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 61 3.41874 0.18380 3.19782 2.36135 171 C - - > 1.38629 1.38629 1.38629 1.38629 0.02420 4.42673 4.42673 1.46634 0.26236 1.09861 0.40547 62 1.66174 0.81689 2.03042 1.43923 172 c - - > 1.38629 1.38629 1.38629 1.38629 0.02538 4.42673 4.33440 1.46634 0.26236 1.09861 0.40547 63 1.66159 1.71863 0.72894 1.90761 173 g - - > 1.38629 1.38629 1.38629 1.38629 0.02423 4.42558 4.42558 1.46634 0.26236 1.03801 0.43720 64 1.56933 2.59928 0.45834 2.46323 174 G - - > 1.38629 1.38629 1.38629 1.38629 0.02923 4.08311 4.42673 1.09196 0.40881 1.09861 0.40547 65 1.76815 1.98522 0.78274 1.44882 176 g - - > 1.38629 1.38629 1.38629 1.38629 0.05283 3.23142 4.42656 1.63237 0.21749 1.09861 0.40547 66 1.47666 1.73031 1.86986 0.82047 183 u - - ) 1.38629 1.38629 1.38629 1.38629 0.03049 4.42656 4.01311 1.46634 0.26236 1.09861 0.40547 67 1.49658 1.34558 1.60920 1.15306 184 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02599 4.42042 4.29583 1.46634 0.26236 1.25619 0.33510 68 1.60426 1.76171 1.19527 1.12520 185 u - - ) 1.38629 1.38629 1.38629 1.38629 0.04582 4.41450 3.42075 1.46634 0.26236 0.79571 0.60013 69 2.17953 0.85527 1.56285 1.37754 186 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.05210 4.40163 1.08650 0.41158 1.54785 0.23915 70 1.42380 1.69866 0.85249 1.89765 188 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03575 3.77836 4.40163 1.08371 0.41300 1.54785 0.23915 71 1.80560 2.08102 0.54070 2.05197 191 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02482 4.40163 4.40163 1.46634 0.26236 0.55410 0.85470 72 2.72753 0.41824 2.43314 1.66785 192 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02431 4.42227 4.42227 1.46634 0.26236 1.09861 0.40547 73 0.17036 3.12574 2.74068 3.03220 193 A - - : 1.38629 1.38629 1.38629 1.38629 0.01223 4.41019 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Pro ACC euk-Pro-r2-031616 STATES 230 NODES 61 CLEN 72 W 681 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 12:22:19 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Pro-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Pro-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Pro-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Pro-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Pro-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Pro-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Pro-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1056 EFFN 1056.000000 CKSUM 4270677779 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4187 0.71883 ECMLC 0.60595 -8.05559 2.36973 1600000 664818 0.001805 ECMGC 0.33825 -47.26277 -34.27660 1600000 32340 0.012369 ECMLI 0.58185 -7.99655 2.77269 1600000 631705 0.001900 ECMGI 0.35049 -44.11303 -31.63905 1600000 31681 0.012626 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 681 1416 -14.973 -16.218 -0.077 -4.265 IL 1 1 2 1 4 20 45 683 1418 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 46 684 1418 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 191 - C - - MR 3 2 3 5 5 27 52 682 1417 -4.919 -0.049 -14.760 -14.972 -15.864 -0.488 1.669 -3.672 -5.108 D 4 2 3 5 5 18 41 678 1413 -11.355 -6.710 -8.982 -10.413 -0.018 IR 5 5 3 5 5 26 53 684 1419 -0.601 -1.560 -11.946 -10.114 -11.219 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 187 G C - - MP 6 5 3 10 6 26 51 681 1416 -15.879 -6.954 -0.012 -14.595 -14.875 -15.270 -9.850 -2.398 -2.213 -0.964 -10.799 -10.264 -1.480 -10.358 -4.244 3.831 -8.148 -4.856 -1.695 -4.523 -7.873 -4.453 ML 7 5 3 10 6 20 44 679 1414 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 44 680 1415 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 17 41 678 1413 -15.717 -14.415 -10.212 -10.894 -10.912 -0.003 IL 10 10 5 10 6 21 46 681 1415 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 23 49 680 1415 -5.049 -0.069 -8.561 -6.728 -7.834 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 185 G C - - MP 12 11 6 16 6 24 49 679 1414 -15.879 -15.819 -0.000 -14.595 -14.875 -15.270 -13.280 -3.448 -14.263 -4.928 -14.663 -11.579 0.930 -14.436 -11.722 3.747 -11.929 -2.860 -1.593 -3.791 -11.572 -13.211 ML 13 11 6 16 6 19 43 677 1412 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 42 678 1413 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 17 41 678 1413 -15.717 -14.415 -10.212 -10.894 -10.912 -0.003 IL 16 16 5 16 6 21 45 679 1413 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 21 45 679 1413 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 184 C G - - MP 18 17 6 22 6 22 47 677 1412 -15.879 -15.819 -0.000 -14.595 -14.875 -15.270 -10.193 -6.302 -4.797 -4.629 -5.627 -11.033 3.388 -6.228 -7.275 2.123 -10.563 -4.641 -1.254 -10.375 -0.779 -8.769 ML 19 17 6 22 6 18 41 675 1410 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 41 677 1412 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 41 678 1413 -15.717 -14.415 -10.212 -10.894 -10.912 -0.003 IL 22 22 5 22 6 20 44 677 1412 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 44 677 1412 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 183 u a - - MP 24 23 6 28 6 20 45 675 1410 -15.879 -15.819 -0.011 -7.070 -14.875 -15.270 -5.245 -3.805 -10.178 -1.676 -3.880 -11.022 2.709 -6.890 -7.917 0.305 -10.550 -4.968 2.903 -10.360 -2.442 -4.948 ML 25 23 6 28 6 16 39 673 1408 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 39 677 1412 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 17 41 678 1413 -15.717 -14.415 -10.212 -10.894 -0.014 -6.987 IL 28 28 5 28 6 17 40 675 1409 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 40 675 1410 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 182 c g - - MP 30 29 6 34 6 18 44 673 1408 -15.869 -15.808 -0.000 -14.584 -14.864 -15.259 -5.878 -5.870 -7.768 0.669 -4.203 -7.180 2.802 -6.346 -9.481 2.284 -7.777 -1.987 0.843 -9.668 -1.354 -6.422 ML 31 29 6 34 6 15 40 671 1405 -9.806 -10.152 -3.097 -0.193 -10.002 -7.531 1.769 -2.940 -2.994 -1.577 MR 32 29 6 34 6 18 42 678 1413 -13.111 -11.840 -7.748 -11.818 -0.009 -10.031 -6.499 -8.263 1.992 -7.260 D 33 29 6 34 6 11 37 669 1404 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 39 673 1408 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 40 673 1408 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 181 g c - - MP 36 35 6 40 6 16 42 671 1406 -15.870 -15.809 -0.000 -14.585 -14.865 -15.260 -9.820 -5.254 -9.644 0.921 -10.752 -5.494 -0.697 -2.535 -4.532 2.618 -0.121 1.252 1.008 -5.947 -6.794 0.804 ML 37 35 6 40 6 14 40 669 1404 -9.681 -10.027 -4.742 -0.069 -9.877 -7.407 -3.634 -3.312 -4.425 1.915 MR 38 35 6 40 6 17 41 677 1412 -13.111 -11.840 -7.748 -11.818 -0.009 -10.031 -6.499 -8.263 1.992 -7.260 D 39 35 6 40 6 11 36 668 1402 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 39 671 1406 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 39 671 1406 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 180 u a - - MP 42 41 6 46 4 14 40 669 1404 -6.112 -15.299 -0.022 -10.601 -7.762 -1.722 -9.662 1.432 -10.776 -10.259 -2.514 -10.346 -10.098 2.421 -10.345 -3.116 2.845 -6.062 -2.869 -8.626 ML 43 41 6 46 4 13 39 668 1403 -6.810 -6.992 -0.052 -5.721 -3.634 -3.312 -4.425 1.915 MR 44 41 6 46 4 17 40 677 1411 -0.017 -10.163 -8.030 -7.091 -7.357 1.992 -7.827 -6.390 D 45 41 6 46 4 11 36 667 1402 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 40 676 1410 -0.248 -3.007 -4.907 -13.957 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 39 669 1404 -1.006 -0.997 -10.233 0.000 0.000 0.000 0.000 [ MATL 9 ] 15 - U - - - ML 48 47 6 50 3 12 38 667 1402 -5.824 -0.026 -14.741 -5.846 -11.488 -13.384 1.994 D 49 47 6 50 3 10 36 666 1401 -7.427 -0.493 -1.818 IL 50 50 3 50 3 12 38 668 1403 -1.016 -0.991 -8.717 0.000 0.000 0.000 0.000 [ MATL 10 ] 18 - G - - - ML 51 50 3 53 2 11 37 666 1401 -16.743 -0.000 -1.332 -5.390 1.834 -6.285 D 52 50 3 53 2 10 36 665 1400 -8.445 -0.004 IL 53 53 3 53 2 11 37 667 1401 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 10 36 665 1400 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 3 117 252 -16.088 -0.000 -14.742 IL 56 56 2 56 3 1 4 122 258 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 132 - A - - - ML 57 56 2 59 3 1 3 117 252 -16.088 -0.109 -3.784 1.891 -5.063 -3.187 -2.730 D 58 56 2 59 3 0 1 132 268 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 119 255 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 133 - G - - - ML 60 59 3 62 3 1 2 59 194 -15.979 -0.000 -14.633 -5.824 -6.071 1.935 -2.791 D 61 59 3 62 3 0 0 135 271 -0.724 -1.356 -8.122 IL 62 62 3 62 3 1 2 139 274 -0.196 -2.978 -11.987 0.000 0.000 0.000 0.000 [ MATL 45 ] 152 - G - - - ML 63 62 3 65 3 1 1 28 46 -7.043 -0.030 -6.230 -5.954 -6.387 1.982 -5.559 D 64 62 3 65 3 0 0 27 45 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 28 46 -4.003 -0.108 -6.703 0.000 0.000 0.000 0.000 [ MATL 46 ] 154 - U - - - ML 66 65 3 68 3 1 1 27 45 -16.069 -0.000 -14.723 -3.262 -0.852 -5.787 1.733 D 67 65 3 68 3 0 0 27 45 -11.314 -0.028 -5.706 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 155 - C - - - ML 69 68 3 71 5 1 1 26 44 -15.022 -0.000 -14.837 -15.049 -15.941 -4.461 1.959 -10.506 -3.917 D 70 68 3 71 5 0 0 25 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 156 177 C G - - MP 72 71 3 76 6 2 2 25 43 -15.956 -15.895 -0.000 -14.672 -14.951 -15.346 -10.265 -7.085 -3.757 -0.328 -6.619 -5.516 3.794 -6.828 -10.122 -0.658 -10.635 -4.174 -1.118 -10.447 -4.063 -8.841 ML 73 71 3 76 6 1 1 25 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 25 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 23 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 157 176 C G - - MP 78 77 6 82 6 2 2 23 41 -7.055 -15.895 -0.011 -14.672 -14.951 -15.346 -10.839 -10.582 -4.899 -3.758 -1.842 -7.642 3.574 -10.247 -10.653 -1.698 -11.116 -8.187 1.584 -10.988 -1.440 -6.073 ML 79 77 6 82 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 23 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 22 40 -5.825 -6.088 -0.064 -7.744 -8.520 -8.180 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 159 175 G C - - MP 84 83 6 88 6 2 2 21 39 -7.143 -15.895 -0.010 -14.672 -14.951 -15.346 -9.997 -3.915 -9.821 -0.711 -10.957 -10.416 1.014 -10.504 -2.512 3.670 -7.790 -1.653 -6.288 -4.636 -8.031 -6.173 ML 85 83 6 88 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 20 38 -5.747 -6.010 -0.067 -7.665 -8.441 -8.101 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 21 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 161 174 G C - - MP 90 89 6 94 6 2 2 18 37 -7.045 -15.895 -0.028 -6.430 -14.951 -15.346 -12.800 -1.412 -13.256 -0.122 -14.003 -7.592 0.026 -13.734 -3.538 3.753 -5.009 -3.728 -9.081 -11.681 -10.962 -12.238 ML 91 89 6 94 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 21 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 18 36 -5.835 -6.098 -0.063 -7.753 -8.529 -8.189 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 20 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 163 173 G C - - MP 96 95 6 100 4 2 2 16 35 -15.162 -15.369 -0.000 -13.783 -13.879 -5.207 -5.099 -7.975 -15.507 -4.531 -9.798 -15.683 -5.006 3.981 -5.908 -4.194 -10.164 -12.124 -12.251 -15.357 ML 97 95 6 100 4 1 1 18 35 -7.585 -0.098 -4.334 -6.497 -4.715 -4.299 -5.530 1.960 MR 98 95 6 100 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 22 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 16 34 -4.533 -0.074 -7.233 0.000 0.000 0.000 0.000 [ MATL 53 ] 164 - U - - - ML 102 101 6 104 3 1 1 14 33 -16.088 -0.000 -14.742 -5.447 -5.252 -6.625 1.978 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 165 - U - - - ML 105 104 3 107 3 1 1 13 31 -16.088 -0.000 -14.742 -9.235 -3.970 -6.515 1.972 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 166 - C - - - ML 108 107 3 110 3 1 1 12 30 -16.088 -0.000 -14.742 -5.805 1.968 -6.720 -4.079 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 167 - A - - - ML 111 110 3 113 3 1 1 10 29 -16.088 -0.000 -11.785 1.461 -10.513 0.299 -5.907 D 112 110 3 113 3 0 0 15 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 168 - A - - - ML 114 113 3 116 3 1 1 9 27 -7.135 -0.010 -14.742 1.989 -6.418 -10.545 -5.903 D 115 113 3 116 3 0 0 12 31 -6.885 -0.789 -1.276 IL 116 116 3 116 3 1 1 10 29 -3.926 -0.114 -6.626 0.000 0.000 0.000 0.000 [ MATL 58 ] 170 - A - - - ML 117 116 3 119 3 1 1 7 26 -16.088 -0.000 -14.742 1.049 -4.065 -3.544 0.836 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 171 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -9.201 0.201 -6.510 1.505 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 643 1378 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 0 15 643 1378 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 34 59 -0.000 -14.083 -13.491 -14.131 [ MATP 15 ] 19 36 G U - - MP 127 126 1 131 6 2 2 34 59 -15.956 -15.895 -0.000 -14.672 -14.951 -15.346 -11.998 -10.658 -12.193 -3.021 -14.334 -15.489 -9.792 -12.236 -11.753 1.336 -4.643 3.730 -9.717 -13.498 -11.623 -4.629 ML 128 126 1 131 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 33 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 20 35 U A - - MP 133 132 6 137 6 2 2 32 57 -15.956 -15.895 -0.000 -14.672 -14.951 -15.346 -4.866 -13.284 -12.323 -9.519 -4.789 -12.468 1.297 -11.589 -4.874 -9.489 -12.547 -11.684 3.642 -3.452 -0.276 -4.932 ML 134 132 6 137 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 28 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 31 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 21 34 C G - - MP 139 138 6 143 6 2 2 30 55 -15.956 -15.895 -0.000 -14.672 -14.951 -15.346 -10.788 -10.526 -4.701 -2.836 -6.064 -11.462 3.684 -3.809 -10.607 0.108 -6.028 -8.127 0.812 -10.940 -5.077 -9.334 ML 140 138 6 143 6 1 1 29 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 28 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 26 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 29 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 22 33 U U - - MP 145 144 6 149 4 2 2 28 53 -15.179 -15.386 -0.000 -13.800 -13.007 -13.288 -4.521 -4.621 -4.289 -3.836 1.222 -4.731 -12.428 -9.496 -12.548 -3.711 -3.207 -3.641 -1.454 3.677 ML 146 144 6 149 4 1 1 27 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 27 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 26 51 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 29 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 28 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - A - - - ML 151 150 6 153 3 1 1 26 51 -16.088 -0.000 -11.582 1.991 -6.389 -6.465 -11.180 D 152 150 6 153 3 0 0 24 49 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 27 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - G - - - ML 154 153 3 156 3 1 1 25 50 -16.088 -0.000 -14.742 -4.978 -6.888 1.982 -6.597 D 155 153 3 156 3 0 0 22 47 -6.979 -2.492 -0.296 IL 156 156 3 156 3 1 1 26 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - U - - - ML 157 156 3 159 3 1 1 24 49 -4.188 -0.081 -14.742 -2.721 -1.046 0.429 1.013 D 158 156 3 159 3 0 0 20 45 -6.979 -0.724 -1.371 IL 159 159 3 159 3 1 1 27 52 -1.049 -0.955 -10.271 0.000 0.000 0.000 0.000 [ MATL 22 ] 28 - G - - - ML 160 159 3 162 3 1 1 10 29 -16.088 -0.000 -14.742 -4.705 -5.127 1.972 -6.773 D 161 159 3 162 3 0 0 16 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 29 - G - - - ML 163 162 3 165 3 1 1 8 27 -16.088 -0.000 -14.742 -5.348 -12.351 1.982 -5.377 D 164 162 3 165 3 0 0 14 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 30 - U - - - ML 166 165 3 168 3 1 1 6 10 -5.012 -0.045 -14.742 -3.877 -3.937 -5.937 1.945 D 167 165 3 168 3 0 0 4 9 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 5 10 -5.838 -0.029 -8.538 0.000 0.000 0.000 0.000 [ MATL 25 ] 32 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.921 -6.682 -2.420 -5.952 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 0 628 1362 -16.088 -0.011 -7.069 IL 174 174 2 174 3 1 1 629 1364 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 37 - U - - - ML 175 174 2 177 5 1 1 628 1362 -15.011 -0.000 -14.826 -15.038 -15.930 -1.849 -4.391 -1.018 1.669 D 176 174 2 177 5 0 0 627 1361 -8.515 -0.053 -7.777 -6.151 -6.064 IL 177 177 3 177 5 1 1 627 1362 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 38 131 C G - - MP 178 177 3 182 6 2 2 627 1361 -15.956 -15.895 -0.001 -11.407 -14.951 -15.346 -12.983 -13.250 -5.029 -9.473 -1.473 -5.736 3.761 -4.890 -12.411 -4.285 -5.922 -11.621 0.680 -12.823 -1.596 -11.212 ML 179 177 3 182 6 1 1 623 1358 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 623 1358 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 617 1352 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 625 1360 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 625 1360 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 39 130 U A - - MP 184 183 6 188 6 2 2 625 1359 -15.955 -15.895 -0.000 -14.671 -14.951 -15.346 -10.307 -10.011 -10.302 -2.567 -6.484 -11.137 0.256 -9.818 -10.162 0.616 -10.672 -3.895 3.639 -1.561 -2.421 -4.778 ML 185 183 6 188 6 1 1 621 1356 -6.840 -7.186 -1.901 -0.585 -7.036 -4.566 -0.200 -0.504 -0.821 0.894 MR 186 183 6 188 6 1 1 621 1356 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 615 1350 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 623 1358 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 623 1358 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 40 129 C G - - MP 190 189 6 194 6 2 2 623 1357 -6.772 -15.895 -0.013 -14.671 -14.951 -15.346 -11.246 -11.032 -5.041 -4.313 -5.748 -11.738 3.540 -5.366 -11.019 -2.360 -2.612 -8.678 1.747 -11.363 -0.937 -9.756 ML 191 189 6 194 6 1 1 620 1354 -6.840 -7.186 -1.901 -0.585 -7.036 -4.566 -0.171 0.625 -0.882 0.038 MR 192 189 6 194 6 1 1 619 1353 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 614 1349 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 622 1356 -6.081 -6.344 -0.053 -8.000 -8.776 -8.436 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 621 1356 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 42 128 G C - - MP 196 195 6 200 6 2 2 621 1355 -15.955 -15.895 -0.000 -14.671 -14.951 -15.346 -6.403 -3.801 -9.743 -3.143 -10.873 -5.785 0.424 -10.433 -4.703 3.609 -0.504 0.429 -4.178 -9.597 -3.627 -6.574 ML 197 195 6 200 6 1 1 618 1353 -6.840 -7.186 -1.901 -0.585 -7.036 -4.566 -0.064 -0.970 0.829 -0.402 MR 198 195 6 200 6 1 1 616 1351 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 613 1347 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 619 1354 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 619 1354 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 43 127 C G - - MP 202 201 6 206 4 2 2 619 1353 -15.178 -15.385 -0.000 -13.799 -11.944 -11.839 -6.391 -3.375 -7.815 -12.092 3.870 -11.027 -11.617 -1.245 -3.970 -5.905 -0.415 -11.983 -6.120 -10.374 ML 203 201 6 206 4 1 1 617 1352 -4.219 -4.401 -0.350 -3.131 -0.171 0.625 -0.882 0.038 MR 204 201 6 206 4 1 1 613 1348 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 611 1346 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 618 1353 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 618 1352 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 44 - U - - - ML 208 207 6 210 3 1 1 617 1351 -16.088 -0.000 -14.742 -4.390 -2.272 -6.109 1.899 D 209 207 6 210 3 0 0 609 1343 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 616 1351 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 45 - U - - - ML 211 210 3 213 3 1 1 616 1350 -16.088 -0.000 -14.742 -4.691 -6.558 -6.714 1.979 D 212 210 3 213 3 0 0 605 1339 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 615 1350 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 46 - u - - - ML 214 213 3 216 3 1 1 615 1349 -16.088 -0.000 -14.742 0.003 -0.003 -0.003 0.003 D 215 213 3 216 3 0 0 599 1334 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 614 1348 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 47 - u - - - ML 217 216 3 219 3 1 1 614 1348 -16.088 -0.000 -14.742 0.003 -0.003 -0.003 0.003 D 218 216 3 219 3 0 0 589 1324 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 612 1347 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 48 - u - - - ML 220 219 3 222 3 1 1 613 1347 -16.088 -0.000 -14.742 0.003 -0.003 -0.003 0.003 D 221 219 3 222 3 0 0 569 1304 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 610 1344 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 49 - G - - - ML 223 222 3 225 3 1 1 612 1346 -1.220 -0.810 -14.742 -1.090 -6.428 1.815 -10.848 D 224 222 3 225 3 0 0 474 1208 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 644 1379 -0.036 -5.336 -17.601 0.000 0.000 0.000 0.000 [ MATL 40 ] 126 - U - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 -1.876 -2.400 -9.628 1.822 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Pro ACC euk-Pro-r2-031616 LENG 72 MAXL 666 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 12:22:19 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Pro-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Pro-r2-031616.sto NSEQ 1056 EFFN 10.195679 CKSUM 4270677779 STATS LOCAL MSV -8.2883 0.71883 STATS LOCAL VITERBI -8.9533 0.71883 STATS LOCAL FORWARD -3.5799 0.71883 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.66568 1.41735 1.18766 1.33313 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 0.00000 * 1 1.94946 2.67708 0.34353 2.53044 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 2 2.21372 2.19774 0.35072 2.58401 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 3 2.57402 0.70173 1.41285 1.68959 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 4 2.39585 0.99141 1.96651 0.92153 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 5 1.98098 1.01172 1.29157 1.49775 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 6 1.69436 1.91091 0.86945 1.38967 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 7 1.63890 2.22971 0.96680 1.14587 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03314 3.83554 4.50936 1.81793 0.17717 1.09861 0.40547 8 3.77240 3.75752 4.44754 0.05980 15 U - - , 1.38629 1.38629 1.38629 1.38629 0.03462 3.73487 4.59043 0.99951 0.45896 1.07193 0.41908 9 2.22427 3.73548 0.17692 3.50168 18 G - - , 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 10 2.82326 4.58217 0.09037 4.08890 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 11 2.70557 1.43651 2.46169 0.49410 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 12 2.66942 0.50490 2.10575 1.58286 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 13 2.84795 1.52225 2.69037 0.42166 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 14 0.03434 4.62043 4.28423 4.59259 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02073 4.59085 4.56887 1.46634 0.26236 1.09861 0.40547 15 3.82932 4.86788 0.04210 4.43879 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59063 4.59063 1.46634 0.26236 1.10599 0.40180 16 1.97078 1.89841 1.30033 0.82462 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06505 2.94058 4.59063 0.80654 0.59131 1.08401 0.41284 17 3.60776 4.35284 0.05616 4.22459 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 18 3.93658 5.12009 0.03931 4.33864 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 19 3.09236 3.02874 3.73414 0.12518 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04541 3.37413 4.59085 0.51403 0.91150 1.09861 0.40547 20 0.10304 3.93965 2.88451 3.79124 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 21 2.36912 2.79766 1.38644 0.51832 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 22 1.73968 2.23215 0.46354 2.42955 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 23 0.59587 2.60987 1.23402 2.47391 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 24 4.34537 1.71753 4.15963 0.23331 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.02640 4.59085 4.14061 1.46634 0.26236 1.09861 0.40547 25 2.23353 2.78178 2.18443 0.33076 37 U - - , 1.38629 1.38629 1.38629 1.38629 0.02062 4.58507 4.58507 1.46634 0.26236 0.82196 0.57905 26 3.02091 0.36612 2.74103 1.64341 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 27 2.48768 1.61600 1.88910 0.56740 39 U - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 28 2.72071 0.57731 2.35642 1.28011 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.02782 4.05770 4.59085 0.92956 0.50208 1.09861 0.40547 29 2.12927 2.32303 0.34108 2.62974 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 30 3.23347 0.25624 2.72861 2.10941 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 31 3.13015 2.63743 3.71449 0.15039 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 32 3.28339 3.31041 3.88326 0.09936 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 33 1.29532 1.48809 1.50329 1.28018 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 34 1.29532 1.48809 1.50329 1.28018 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 35 1.29532 1.48809 1.50329 1.28018 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 36 2.14583 3.94438 0.17564 3.69910 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.43763 1.06627 4.59085 3.68466 0.02543 1.09861 0.40547 37 2.50300 2.63092 3.68475 0.19718 126 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02076 4.59085 4.56573 1.46634 0.26236 1.09861 0.40547 38 2.29284 2.90454 0.22946 3.01016 127 G - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59059 4.59059 1.46634 0.26236 1.10706 0.40127 39 2.90349 0.47528 2.01965 1.65676 128 C - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59059 4.59059 1.46634 0.26236 1.10706 0.40127 40 1.46464 2.58560 0.49309 2.49190 129 G - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59059 4.59059 1.46634 0.26236 1.10706 0.40127 41 0.65785 1.94180 1.45957 2.24192 130 A - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59059 4.59059 1.46634 0.26236 1.08194 0.41391 42 1.77400 2.90870 0.33743 2.77748 131 G - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 43 0.15003 3.35669 3.03686 2.87384 132 A - - , 1.38629 1.38629 1.38629 1.38629 0.04330 4.59085 3.43467 1.46634 0.26236 1.09861 0.40547 44 3.38934 4.11192 0.09510 3.20372 133 G - - , 1.38629 1.38629 1.38629 1.38629 0.05752 3.08946 4.56851 1.88690 0.16433 0.48819 0.95123 45 3.90552 4.75086 0.04366 4.27226 152 G - - , 1.38629 1.38629 1.38629 1.38629 0.03720 4.13310 3.88828 0.99109 0.46390 1.09861 0.40547 46 2.80238 2.00019 3.51733 0.25574 154 U - - , 1.38629 1.38629 1.38629 1.38629 0.02071 4.58046 4.58046 1.46634 0.26236 0.68845 0.69787 47 3.80043 0.07120 4.54208 3.33225 155 C - - , 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 48 2.33759 0.47312 2.17925 1.78821 156 C - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 49 2.77087 0.52715 2.42572 1.35212 157 C - - < 1.38629 1.38629 1.38629 1.38629 0.02651 4.13425 4.59085 0.99206 0.46333 1.09861 0.40547 50 2.03008 2.14364 0.38172 2.67708 159 G - - < 1.38629 1.38629 1.38629 1.38629 0.02615 4.15622 4.59085 1.01074 0.45248 1.09861 0.40547 51 1.94885 2.49483 0.33578 2.80895 161 G - - < 1.38629 1.38629 1.38629 1.38629 0.02655 4.13162 4.59085 0.98984 0.46463 1.09861 0.40547 52 2.56062 3.26980 0.17309 3.13117 163 G - - < 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 53 3.35162 3.24289 3.87830 0.09956 164 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 54 3.51615 3.13409 3.93111 0.09747 165 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 55 3.99998 0.06616 4.40515 3.39650 166 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 56 0.41557 3.81031 1.24717 3.48754 167 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02069 4.59085 4.57210 1.46634 0.26236 1.09861 0.40547 57 0.03599 4.54897 4.41955 4.36334 168 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02615 4.15602 4.59066 1.01074 0.45248 1.08615 0.41176 58 0.80247 2.49585 2.52593 0.94323 170 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 59 3.07351 1.36737 3.58757 0.39854 171 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 60 3.41625 0.19488 3.11833 2.30261 173 C - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 61 3.02230 0.36901 2.36240 1.79759 174 C - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 62 2.87249 0.44588 2.04329 1.75111 175 C - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 63 1.48341 2.57976 0.47965 2.54664 176 G - - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59085 4.59085 1.46634 0.26236 1.09861 0.40547 64 2.00033 2.32863 0.42726 2.16293 177 G - - > 1.38629 1.38629 1.38629 1.38629 0.06790 2.98561 4.19035 0.83540 0.56863 1.09861 0.40547 65 1.24533 1.01491 2.03489 1.51857 180 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02060 4.58584 4.58584 1.46634 0.26236 1.25064 0.33732 66 1.74016 1.15813 1.60546 1.17236 181 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02111 4.58584 4.53811 1.46634 0.26236 1.25064 0.33732 67 1.70593 1.39881 0.90046 1.80105 182 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02149 4.54391 4.54391 1.46634 0.26236 0.83180 0.57140 68 1.01809 2.08577 0.90705 2.20010 183 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 69 1.99609 1.48657 0.61293 2.34106 184 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02137 4.54965 4.54965 1.46634 0.26236 1.09861 0.40547 70 2.83928 0.39162 2.09996 1.94412 185 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02774 4.08688 4.54965 0.98687 0.46639 1.09861 0.40547 71 2.78029 0.38226 2.44044 1.78058 187 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04767 3.32486 4.54965 1.18368 0.36550 1.09861 0.40547 72 1.84040 0.33547 3.23193 2.44461 191 C - - : 1.38629 1.38629 1.38629 1.38629 0.01074 4.53902 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-SeC ACC euk-SeC-050216 STATES 280 NODES 70 CLEN 87 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Mon May 2 18:05:24 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-SeC-050216.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-SeC-050216.sto COM [2] cmcalibrate /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-SeC-050216.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 65 EFFN 65.000000 CKSUM 667121502 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.1277 0.71869 ECMLC 0.67931 -6.85370 2.59384 1600000 735225 0.001632 ECMGC 0.35634 -51.41264 -37.94932 1600000 48481 0.008251 ECMLI 0.62007 -7.42243 2.85689 1600000 703582 0.001706 ECMGI 0.36643 -46.52343 -33.61727 1600000 45285 0.008833 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 120 -10.990 -12.235 -0.005 -8.689 IL 1 1 2 1 4 18 49 103 121 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 51 104 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 91 - G - + MR 3 2 3 5 5 23 55 102 120 -11.049 -0.002 -10.864 -11.076 -11.968 -2.458 -8.104 1.929 -7.225 D 4 2 3 5 5 15 44 100 118 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 49 102 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 90 G C = = MP 6 5 3 10 6 24 55 101 119 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.898 -6.641 -11.786 -4.069 -11.584 -7.841 -5.936 -11.415 -8.002 3.933 -8.208 -0.708 -6.286 -8.294 -8.362 -10.693 ML 7 5 3 10 6 16 46 99 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 45 99 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 40 97 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 48 100 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 48 100 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 89 C G = = MP 12 11 6 16 6 24 54 99 117 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.021 -9.302 -8.338 -5.538 -6.689 -8.483 3.922 -7.604 -8.442 -5.510 -8.562 -7.704 -1.018 -8.855 -1.935 -7.244 ML 13 11 6 16 6 16 45 97 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 45 97 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 40 95 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 47 98 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 48 98 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 88 C G = = MP 18 17 6 22 6 23 52 97 115 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.982 -6.617 -6.908 1.523 -5.783 -7.653 3.250 -6.443 -6.812 1.122 -7.271 -4.212 -0.668 -0.853 -3.283 -5.545 ML 19 17 6 22 6 16 45 95 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 44 95 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 40 93 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 47 96 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 47 96 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 87 c g = = MP 24 23 6 28 6 22 51 95 113 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.357 -6.081 -6.367 0.888 -2.698 -7.210 2.906 -5.918 -6.235 0.945 -6.751 -0.932 0.209 -6.547 1.467 -4.972 ML 25 23 6 28 6 16 44 93 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 44 93 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 39 91 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 46 94 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 46 94 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 86 G C = = MP 30 29 6 34 6 21 49 93 111 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -1.585 -4.834 -6.019 -0.355 -7.132 -6.619 2.015 -6.694 -6.437 3.178 -6.691 -0.149 -2.472 -0.919 -4.214 -4.979 ML 31 29 6 34 6 15 44 91 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 43 91 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 39 89 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 45 92 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 46 92 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 85 g c = = MP 36 35 6 40 6 19 47 91 109 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -1.448 -4.853 -6.032 1.001 -7.152 -6.652 -2.241 -6.702 0.296 2.398 -6.706 2.387 0.152 -5.905 -1.166 -4.992 ML 37 35 6 40 6 15 43 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 42 89 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 38 87 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 44 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 44 90 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 84 A U = = MP 42 41 6 46 6 17 45 89 107 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.095 -6.909 -8.115 3.554 -8.276 -9.746 -1.095 -7.983 -0.626 0.426 -0.769 -4.262 -4.546 -9.029 0.110 -6.802 ML 43 41 6 46 6 14 42 88 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 13 41 88 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 10 38 86 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 15 43 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 15 43 88 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 83 U U = = MP 48 47 6 52 6 15 43 87 105 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.952 -8.981 -8.332 -5.235 -6.754 -8.545 -0.277 -7.630 -8.401 -5.285 -8.556 -7.030 -3.478 -2.251 -4.455 3.882 ML 49 47 6 52 6 13 41 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 12 40 87 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 10 38 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 14 42 87 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 14 41 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 82 G C = = MP 54 53 6 58 4 13 41 85 103 -11.189 -11.396 -0.003 -9.810 -9.886 -6.641 -11.741 -4.064 -11.578 -7.845 -5.936 -11.383 -8.001 3.921 -8.208 -0.456 -6.283 -8.296 -8.359 -10.636 ML 55 53 6 58 4 12 40 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 11 39 86 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 10 37 85 104 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 12 40 88 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 12 40 87 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - + - ML 60 59 6 62 3 11 39 82 101 -12.104 -0.001 -10.758 1.995 -8.223 -7.486 -7.616 D 61 59 6 62 3 9 37 82 100 -6.174 -1.687 -0.566 IL 62 62 3 62 3 11 39 86 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - + - ML 63 62 3 65 2 10 38 81 99 -12.747 -0.000 -2.529 -1.254 1.019 0.466 D 64 62 3 65 2 9 37 80 99 -8.445 -0.004 IL 65 65 3 65 2 10 38 83 101 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 66 65 3 67 179 9 37 80 98 [ BEGL 14 ] - - - - - - S 67 66 1 68 1 0 8 47 65 0.000 [ BIF 15 ] - - - - - - B 68 67 1 69 119 0 8 47 65 [ BEGL 16 ] - - - - - - S 69 68 1 70 4 0 0 27 45 -0.004 -10.162 -9.569 -10.210 [ MATP 17 ] 12 28 C G = = MP 70 69 1 74 6 2 2 27 45 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.995 -9.262 -8.324 -5.483 -6.681 -0.420 3.577 -7.593 -8.424 -5.446 -8.550 -7.630 1.380 -8.836 -0.662 -7.225 ML 71 69 1 74 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 1 74 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 1 74 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 27 c g = = MP 76 75 6 80 6 2 2 25 43 -4.022 -12.017 -0.094 -10.793 -11.073 -11.468 -7.077 -6.834 -6.981 -2.690 -5.747 -7.679 2.750 -6.455 -6.879 0.237 -7.327 -4.453 2.216 -7.216 1.503 -1.588 ML 77 75 6 80 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 79 75 6 80 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 80 80 5 80 6 1 1 24 42 -5.094 -5.357 -0.107 -7.012 -7.788 -7.449 0.000 0.000 0.000 0.000 IR 81 81 6 81 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 26 U G = = MP 82 81 6 86 6 2 2 23 41 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.147 -7.118 -8.109 1.100 -7.701 -9.449 1.353 -7.815 -7.847 -0.590 -8.355 -0.962 -3.985 -8.965 3.324 -6.788 ML 83 81 6 86 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 84 81 6 86 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 85 81 6 86 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 86 86 5 86 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 87 87 6 87 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 25 c g = = MP 88 87 6 92 6 2 2 21 39 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.831 -5.953 -6.775 1.337 -0.498 -7.627 2.958 -6.676 -6.784 1.716 -7.230 0.383 -2.063 -6.928 -3.757 -5.501 ML 89 87 6 92 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 90 87 6 92 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 91 87 6 92 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 92 92 5 92 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 93 93 6 93 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 24 a u = = MP 94 93 6 98 6 2 2 19 37 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.684 -5.527 -6.535 2.702 -6.670 -7.202 1.562 -6.793 -6.777 2.344 -7.103 -3.139 0.227 -6.524 -4.020 -5.400 ML 95 93 6 98 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 96 93 6 98 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 97 93 6 98 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 98 98 5 98 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 99 99 6 99 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 23 c g = = MP 100 99 6 104 4 2 2 16 35 -11.189 -11.396 -0.003 -9.810 -7.651 -6.445 -7.619 1.113 -7.871 -8.767 2.860 -7.667 -0.441 2.491 -7.994 -3.893 -3.790 -8.045 -5.321 -6.372 ML 101 99 6 104 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 102 99 6 104 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 103 99 6 104 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 104 104 5 104 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 105 105 6 105 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - U - + - ML 106 105 6 108 3 1 1 13 32 -12.104 -0.001 -10.758 -5.426 -5.249 -3.189 1.941 D 107 105 6 108 3 0 0 16 34 -6.174 -1.687 -0.566 IL 108 108 3 108 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - + - ML 109 108 3 111 3 1 1 12 30 -12.104 -0.001 -10.758 -6.720 -8.488 1.994 -7.481 D 110 108 3 111 3 0 0 15 33 -6.174 -1.687 -0.566 IL 111 111 3 111 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - + - ML 112 111 3 114 3 1 1 10 29 -12.104 -0.001 -10.758 -6.720 -8.488 1.994 -7.481 D 113 111 3 114 3 0 0 13 32 -6.174 -1.687 -0.566 IL 114 114 3 114 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - + - ML 115 114 3 117 2 1 1 1 1 * 0.000 -4.959 -2.050 -1.915 1.791 D 116 114 3 117 2 0 0 0 0 * 0.000 IL 117 117 3 117 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 118 117 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 119 68 1 120 5 0 0 30 48 -11.049 -0.002 -10.864 -11.076 -11.968 IL 120 120 2 120 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 29 47 U A = = MP 121 120 2 125 6 2 2 30 48 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.041 -6.725 -8.208 0.339 -9.704 -11.076 -5.252 -8.206 -7.788 -3.382 -0.764 0.535 3.648 -9.466 -7.138 -6.818 ML 122 120 2 125 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 123 120 2 125 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 124 120 2 125 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 125 125 5 125 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 126 126 6 126 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 G U = = MP 127 126 6 131 6 2 2 28 46 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.087 -6.802 -8.216 0.534 -9.184 -10.688 -0.979 -8.162 -7.821 -3.453 -8.446 3.651 -1.223 -9.422 -6.707 -0.113 ML 128 126 6 131 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 6 131 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 6 131 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 C G = = MP 133 132 6 137 6 2 2 26 44 -12.077 -12.017 -0.066 -4.521 -11.073 -11.468 -7.975 -7.766 -7.699 1.059 -6.339 -8.203 3.587 -7.107 -7.655 -0.882 -7.992 -5.464 0.273 -8.066 -3.936 -6.424 ML 134 132 6 137 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 a u = = MP 139 138 6 143 6 2 2 24 42 -12.014 -11.953 -0.003 -10.730 -11.010 -11.405 -6.814 -5.507 -6.676 2.888 -7.435 -7.428 -0.957 -7.119 -6.924 2.385 -7.255 -3.081 1.378 -6.698 -4.687 -5.572 ML 140 138 6 143 6 1 1 23 42 -8.703 -9.050 -0.166 -3.458 -8.899 -6.429 1.844 -3.160 -2.716 -2.784 MR 141 138 6 143 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 145 144 6 149 6 2 2 22 40 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.978 -6.642 -12.137 -4.103 -11.593 -7.815 -5.928 -11.653 -8.008 3.986 -8.204 -4.568 -6.293 -8.278 -8.366 -11.152 ML 146 144 6 149 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 148 144 6 149 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 149 149 5 149 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 150 150 6 150 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 G C = = MP 151 150 6 155 4 2 2 20 38 -11.189 -11.396 -0.003 -9.810 -6.358 -4.997 -6.185 2.136 -7.218 -6.785 0.483 -6.821 -6.572 3.216 -6.833 -2.627 -0.836 -6.061 -4.338 -5.139 ML 152 150 6 155 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 153 150 6 155 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 154 150 6 155 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 155 155 5 155 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 156 156 6 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 157 156 6 159 3 1 1 17 35 -12.104 -0.001 -10.758 -7.640 1.993 -8.119 -6.648 D 158 156 6 159 3 0 0 19 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 160 159 3 162 3 1 1 16 34 -12.104 -0.001 -10.758 -8.419 -7.531 -9.496 1.996 D 161 159 3 162 3 0 0 18 36 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - * - ML 163 162 3 165 3 1 1 15 33 -12.104 -0.001 -10.758 -8.419 -7.531 -9.496 1.996 D 164 162 3 165 3 0 0 17 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - * - ML 166 165 3 168 3 1 1 13 32 -12.104 -0.001 -10.758 -7.640 1.993 -8.119 -6.648 D 167 165 3 168 3 0 0 16 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - * - ML 169 168 3 171 3 1 1 12 30 -12.104 -0.001 -10.758 1.995 -8.223 -7.486 -7.616 D 170 168 3 171 3 0 0 15 33 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 172 171 3 174 3 1 1 10 29 -12.104 -0.001 -10.758 1.967 -7.573 -3.668 -7.198 D 173 171 3 174 3 0 0 13 32 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - + - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.995 -8.223 -7.486 -7.616 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 179 66 1 180 2 0 7 45 62 -12.747 -0.000 IL 180 180 2 180 2 1 9 47 65 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 44 ] - - - - - - B 181 180 2 182 232 0 7 45 62 [ BEGL 45 ] - - - - - - S 182 181 1 183 4 0 0 30 46 -0.004 -10.162 -9.569 -10.210 [ MATP 46 ] 48 66 G A = = MP 183 182 1 187 6 2 2 30 46 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.271 -7.136 -8.246 -3.443 -8.071 -9.758 -3.746 -8.001 3.965 -3.759 -8.474 -4.481 -4.523 -9.258 -5.709 -6.933 ML 184 182 1 187 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 1 187 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 1 187 6 0 0 26 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 30 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 49 65 C G = = MP 189 188 6 193 6 2 2 28 44 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.216 -7.092 -8.134 0.119 -7.755 -9.176 3.069 -7.891 -7.903 2.668 -8.358 -4.514 -4.140 -8.819 -5.369 -6.864 ML 190 188 6 193 6 1 1 26 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 24 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 28 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 50 64 U A = = MP 195 194 6 199 6 2 2 26 42 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.719 -8.815 -8.171 -4.925 -6.599 -8.411 1.920 -7.477 -8.230 1.089 -8.415 -6.874 3.315 -8.637 -4.273 -7.019 ML 196 194 6 199 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 63 G C = = MP 201 200 6 205 6 2 2 24 40 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.565 -6.627 -10.653 -1.038 -10.822 -7.898 0.007 -10.544 -7.969 3.849 -8.198 -4.492 -5.976 -8.283 -7.867 -9.481 ML 202 200 6 205 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 24 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 62 c g = = MP 207 206 6 211 6 2 2 22 38 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.487 -6.201 -6.480 1.507 -5.347 -7.307 2.160 -6.004 -6.346 0.311 -6.853 -3.783 2.019 -6.668 1.670 -5.072 ML 208 206 6 211 6 1 1 20 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 6 1 1 20 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 6 211 6 0 0 18 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 22 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 21 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 61 c g = = MP 213 212 6 217 4 2 2 20 36 -2.434 -3.915 -0.420 -9.810 -7.764 -7.613 -7.523 1.793 -0.863 -8.040 2.593 -6.942 -7.479 0.539 -7.835 -5.336 -2.323 -7.837 2.076 -6.234 ML 214 212 6 217 4 1 1 18 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 4 1 1 18 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 216 212 6 217 4 0 0 17 34 -4.568 -4.250 -2.265 -0.520 IL 217 217 5 217 4 1 1 19 36 -1.684 -1.097 -2.185 -9.390 0.000 0.000 0.000 0.000 IR 218 218 6 218 3 1 1 14 33 -4.601 -0.070 -7.301 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - U - + - ML 219 218 6 221 3 1 1 13 32 -12.104 -0.001 -10.758 -2.680 -2.219 -0.480 1.542 D 220 218 6 221 3 0 0 16 34 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - A - + - ML 222 221 3 224 3 1 1 12 30 -12.104 -0.001 -10.758 1.516 -4.908 -1.478 -0.419 D 223 221 3 224 3 0 0 15 33 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - G - + - ML 225 224 3 227 3 1 1 10 29 -12.104 -0.001 -10.758 -0.785 -1.729 1.459 -1.435 D 226 224 3 227 3 0 0 13 32 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - C - + - ML 228 227 3 230 2 1 1 1 1 * 0.000 0.048 1.323 -5.334 -1.184 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 [ BEGR 57 ] - - - - - - S 232 181 1 233 5 0 0 26 44 -11.049 -0.002 -10.864 -11.076 -11.968 IL 233 233 2 233 5 1 1 27 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 67 81 G C = = MP 234 233 2 238 6 2 2 26 44 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.804 -6.642 -11.437 -0.809 -11.525 -7.873 -5.927 -11.154 -7.995 3.938 -8.212 -4.534 -6.265 -8.313 -8.332 -10.268 ML 235 233 2 238 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 236 233 2 238 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 237 233 2 238 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 238 238 5 238 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 239 239 6 239 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 68 80 U A = = MP 240 239 6 244 6 2 2 24 42 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.766 -6.336 -6.770 1.339 -5.737 -7.690 1.091 -6.323 -6.608 -0.363 -7.127 -0.990 3.298 -7.027 -3.207 -5.360 ML 241 239 6 244 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 242 239 6 244 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 243 239 6 244 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 244 244 5 244 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 245 245 6 245 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 69 79 G C = = MP 246 245 6 250 6 2 2 22 40 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.230 -4.872 -6.057 -0.102 -7.099 -6.647 1.302 -6.708 -6.458 3.385 -6.715 -0.270 0.156 -5.917 -4.202 -5.012 ML 247 245 6 250 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 248 245 6 250 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 249 245 6 250 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 250 250 5 250 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 251 251 6 251 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 70 78 G C = = MP 252 251 6 256 4 2 2 20 38 -11.189 -11.396 -0.003 -9.810 -9.961 -0.524 -12.060 -4.095 -11.613 -7.821 -5.938 -11.609 -8.006 3.922 -8.205 -4.564 -6.296 -8.281 -8.377 -11.047 ML 253 251 6 256 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 254 251 6 256 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 255 251 6 256 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 256 256 5 256 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 257 257 6 257 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - U - + - ML 258 257 6 260 3 1 1 17 35 -12.104 -0.001 -10.758 -2.948 -5.443 -6.369 1.939 D 259 257 6 260 3 0 0 19 37 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 72 - U - + - ML 261 260 3 263 3 1 1 16 34 -12.104 -0.001 -10.758 -8.419 -7.531 -9.496 1.996 D 262 260 3 263 3 0 0 18 36 -6.174 -1.687 -0.566 IL 263 263 3 263 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 73 - C - + - ML 264 263 3 266 3 1 1 15 33 -12.104 -0.001 -10.758 -7.640 1.993 -8.119 -6.648 D 265 263 3 266 3 0 0 17 35 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 74 - G - + - ML 267 266 3 269 3 1 1 13 32 -12.104 -0.001 -10.758 0.830 -6.795 1.139 -6.612 D 268 266 3 269 3 0 0 16 34 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 75 - A - + - ML 270 269 3 272 3 1 1 12 30 -12.104 -0.001 -10.758 1.931 -6.699 -6.725 -2.585 D 271 269 3 272 3 0 0 15 33 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 76 - U - + - ML 273 272 3 275 3 1 1 10 29 -12.104 -0.001 -10.758 -6.273 -3.125 -7.030 1.950 D 274 272 3 275 3 0 0 13 32 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 276 275 3 278 2 1 1 1 1 * 0.000 -8.419 -7.531 -9.496 1.996 D 277 275 3 278 2 0 0 0 0 * 0.000 IL 278 278 3 278 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 279 278 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-SeC ACC euk-SeC-050216 LENG 87 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Mon May 2 18:05:24 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-SeC-050216.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-SeC-050216.sto NSEQ 65 EFFN 4.598083 CKSUM 667121502 STATS LOCAL MSV -8.7166 0.71869 STATS LOCAL VITERBI -9.7086 0.71869 STATS LOCAL FORWARD -3.9019 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.63336 1.36932 1.21142 1.37566 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 0.00000 * 1 2.95831 3.90140 0.09940 3.79408 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 2 3.68124 0.18118 3.51499 2.20022 2 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 3 1.71334 0.97082 1.52618 1.49789 3 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 4 1.88170 1.01165 1.63906 1.23827 4 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 5 1.79547 1.63616 0.71124 1.90926 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 6 1.61754 1.93512 0.77071 1.63719 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 7 1.06093 1.72036 1.37615 1.50366 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 8 3.07381 1.88899 2.85094 0.29472 8 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 9 2.92838 3.86528 0.10300 3.75358 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 10 0.06404 4.07589 3.72958 3.86068 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 11 1.74928 1.91536 1.01832 1.14692 11 g + - , 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 12 2.63785 0.54738 2.43581 1.33753 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 13 2.25449 1.02144 1.86436 0.96757 13 u = - < 1.38629 1.38629 1.38629 1.38629 0.07815 2.79357 4.27042 0.40721 1.09512 1.09861 0.40547 14 1.85774 1.37209 1.76976 0.86744 15 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 15 1.75485 1.02307 1.36440 1.55095 16 c = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 16 1.31966 1.62272 1.00173 1.78279 17 g = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 17 1.76562 1.16879 1.08841 1.70690 18 g = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 18 2.74553 2.72695 2.99099 0.19829 19 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 19 3.50788 4.47429 0.06111 4.02160 20 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 20 3.50788 4.47429 0.06111 4.02160 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 21 2.41359 2.23111 2.50924 0.32605 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 22 1.84193 1.22671 1.06811 1.58682 23 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 23 1.98767 1.09623 1.49573 1.18819 24 c = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 24 1.69939 1.57918 0.95599 1.48444 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 25 1.84496 1.99030 0.67083 1.63974 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 26 1.31813 2.01249 0.77592 1.97740 27 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 27 1.57017 2.32711 0.50343 2.40844 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 28 1.89449 1.68344 1.61266 0.76676 29 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 29 1.80409 2.35513 0.48437 2.08420 30 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 30 1.96705 0.65084 2.07296 1.54783 31 C = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 31 1.21711 2.03915 0.94558 1.68566 32 g = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 32 3.10669 3.99074 0.08677 3.91807 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 33 1.46397 2.12828 0.61920 2.19580 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 34 3.82474 0.07805 4.34893 3.21052 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 35 3.41761 3.25381 3.95704 0.09490 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 36 3.41761 3.25381 3.95704 0.09490 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 37 3.82474 0.07805 4.34893 3.21052 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 38 0.06404 4.07589 3.72958 3.86068 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 39 0.10364 3.71670 3.11524 3.51417 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 40 0.06404 4.07589 3.72958 3.86068 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 41 2.43229 0.69126 1.98520 1.29511 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 42 4.14394 0.09984 3.90807 2.82892 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.06300 4.27042 3.05583 1.46634 0.26236 1.09861 0.40547 43 1.85238 1.02961 1.86932 1.10334 44 c = - > 1.38629 1.38629 1.38629 1.38629 0.02934 4.23675 4.23675 1.46634 0.26236 0.46604 0.98748 44 1.74979 2.23153 0.58699 1.81507 45 G = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 45 2.54469 1.90595 2.20589 0.41148 46 U = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 46 0.85576 2.03168 1.45214 1.56134 47 a = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 47 2.74311 2.64725 0.21630 2.82525 48 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 48 2.02585 1.02216 1.03848 1.86879 49 c = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 49 2.47355 1.22042 1.77373 0.79649 50 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 50 2.33990 2.62136 0.24886 2.97066 51 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 51 1.76452 1.20164 1.79443 1.01664 52 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 52 1.67052 1.09070 1.74301 1.20105 53 c = - < 1.38629 1.38629 1.38629 1.38629 0.17311 1.93114 4.27042 0.48558 0.95540 1.09861 0.40547 53 1.93004 2.10571 1.83902 0.55491 56 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 54 0.57899 2.37735 2.02473 1.53847 57 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 55 1.59823 2.20307 0.63717 1.84204 58 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 56 1.36896 0.77062 2.60288 1.56618 59 c + - _ 1.38629 1.38629 1.38629 1.38629 0.18150 1.88383 4.27042 0.17472 1.83068 1.09861 0.40547 57 1.68037 1.88703 0.80673 1.53312 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 58 1.37894 1.94410 0.90122 1.61464 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 59 3.20647 0.28346 2.50305 2.08351 63 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 60 0.88657 1.88497 1.11095 2.23630 64 a = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 61 2.10284 1.11809 0.94732 1.81274 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 62 0.25915 2.92068 2.46941 2.41064 66 A = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 63 2.72400 3.88990 0.11474 3.80146 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 64 1.80881 1.40169 1.75080 0.87627 68 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 65 1.88798 1.88566 0.57177 2.02217 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 66 2.58739 3.74503 0.13381 3.63457 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 67 2.62048 2.80172 3.34927 0.18462 71 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 68 3.41761 3.25381 3.95704 0.09490 72 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 69 3.82474 0.07805 4.34893 3.21052 73 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 70 0.90641 2.95402 0.75876 2.58158 74 g + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 71 0.14764 3.32723 3.24005 2.77737 75 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 72 3.04751 2.69844 3.56773 0.15433 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 73 3.41761 3.25381 3.95704 0.09490 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 74 3.83033 0.13503 3.58504 2.56556 78 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 75 2.23255 0.66772 1.76025 1.57085 79 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 76 0.98326 1.96703 1.25957 1.59819 80 a = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 77 4.00090 0.13535 3.73927 2.47078 81 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 78 3.92271 0.14625 3.70712 2.38896 82 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 79 2.59562 2.89653 1.75308 0.36105 83 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 80 1.74502 1.59000 1.41715 0.97014 84 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 81 1.71539 1.15715 1.69784 1.13119 85 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 82 2.16502 0.79821 1.51395 1.53674 86 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 83 1.64075 1.82687 0.78713 1.66021 87 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 84 1.76668 1.59881 0.87622 1.55774 88 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 85 2.51519 3.67620 0.14826 3.45372 89 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 86 3.99987 0.13638 3.76555 2.45322 90 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 87 2.66725 3.93474 0.12537 3.54617 91 G + - : 1.38629 1.38629 1.38629 1.38629 0.01428 4.25634 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Ser ACC euk-Ser-r2-031616 STATES 265 NODES 71 CLEN 82 W 600 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 13:00:09 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ser-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Ser-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ser-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ser-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ser-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Ser-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ser-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2001 EFFN 2001.000000 CKSUM 3167817025 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.6986 0.71868 ECMLC 0.65785 -7.87225 1.59755 1600000 609140 0.001970 ECMGC 0.34682 -47.48836 -35.79697 1600000 23069 0.017339 ECMLI 0.68392 -6.95694 2.02095 1600000 556938 0.002155 ECMGI 0.34739 -44.72098 -33.02962 1600000 23224 0.017224 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 600 1240 -15.894 -17.139 -0.000 -12.503 IL 1 1 2 1 4 27 53 602 1243 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 28 55 603 1243 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 233 - G - - MR 3 2 3 5 5 31 56 602 1242 -5.536 -0.031 -15.757 -15.970 -16.861 -1.317 -5.318 1.789 -3.096 D 4 2 3 5 5 24 49 598 1238 -5.628 -0.983 -3.254 -4.685 -1.600 IR 5 5 3 5 5 31 57 603 1244 -0.597 -1.566 -12.321 -10.489 -11.595 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 229 G C - - MP 6 5 3 10 6 30 55 600 1241 -7.527 -5.236 -0.073 -15.589 -8.177 -6.184 -14.450 -3.063 -4.756 -6.836 -16.251 -4.099 -10.722 -5.792 -1.869 3.910 -4.375 -1.507 -11.035 -4.444 -13.093 -14.525 ML 7 5 3 10 6 27 52 600 1240 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 27 52 598 1238 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 23 47 593 1233 -9.466 -8.165 -3.962 -4.644 -4.661 -0.232 IL 10 10 5 10 6 29 52 597 1237 -6.231 -6.494 -4.412 -8.149 -0.116 -8.585 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 25 50 598 1239 -1.248 -6.421 -1.525 -10.012 -2.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 226 u a - - MP 12 11 6 16 6 32 55 599 1239 -16.800 -16.740 -0.000 -15.516 -15.796 -16.191 -10.787 -7.102 -4.893 1.391 -5.839 -11.672 1.139 -5.365 -10.726 0.593 -8.890 2.050 2.220 -11.000 -0.425 -4.789 ML 13 11 6 16 6 31 55 599 1240 -11.838 -0.030 -6.899 -6.593 -12.034 -9.564 -6.542 1.986 -6.993 -5.629 MR 14 11 6 16 6 28 51 596 1236 -11.527 -10.256 -6.165 -10.234 -0.027 -8.448 1.288 -4.735 0.563 -4.527 D 15 11 6 16 6 23 47 591 1232 -15.536 -14.234 -10.031 -10.713 -10.731 -0.003 IL 16 16 5 16 6 28 53 598 1238 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 31 54 599 1239 -1.021 -0.986 -11.353 -9.521 -10.626 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 223 C G - - MP 18 17 6 22 6 30 53 597 1237 -16.825 -5.545 -0.031 -15.541 -15.820 -16.216 -10.457 -5.768 -2.611 1.973 -4.581 -6.524 3.062 -6.063 -7.252 -0.950 -11.006 -2.948 1.184 -6.714 -0.910 -8.230 ML 19 17 6 22 6 27 51 596 1237 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 27 50 595 1235 -11.527 -10.256 -0.739 -10.234 -1.337 -8.448 1.243 -3.140 -3.358 0.508 D 21 17 6 22 6 23 47 591 1232 -15.536 -14.234 -10.031 -10.713 -10.731 -0.003 IL 22 22 5 22 6 27 51 596 1237 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 29 52 597 1238 -7.208 -5.296 -0.052 -8.887 -9.993 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 221 G C - - MP 24 23 6 28 6 28 51 594 1235 -6.414 -16.741 -0.017 -15.518 -15.797 -16.193 -10.768 -1.166 -10.586 1.999 -11.717 -6.246 -2.079 -1.719 -6.450 3.174 -5.798 0.660 -1.650 -4.446 -8.791 -9.552 ML 25 23 6 28 6 28 51 596 1237 -12.179 -0.024 -7.239 -6.934 -12.375 -9.904 1.992 -7.612 -6.906 -7.054 MR 26 23 6 28 6 26 48 592 1233 -10.257 -8.986 -4.895 -8.964 -0.067 -7.178 -4.275 1.932 -4.917 -3.346 D 27 23 6 28 6 23 47 591 1232 -15.536 -14.234 -1.127 -6.970 -1.248 -3.144 IL 28 28 5 28 6 28 50 594 1235 -1.020 -8.447 -0.995 -10.102 -10.878 -10.539 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 28 51 595 1236 -0.598 -1.565 -12.269 -10.437 -11.543 0.000 0.000 0.000 0.000 [ MATP 6 ] 8 217 u a - - MP 30 29 6 34 6 26 49 592 1233 -16.849 -16.789 -0.000 -15.565 -15.845 -16.240 -6.112 -5.641 -5.702 2.139 -6.690 -9.644 1.876 -6.215 -7.496 0.510 -9.412 -3.568 2.437 -4.264 -0.305 -4.149 ML 31 29 6 34 6 24 47 591 1231 -6.854 -7.200 -0.720 -1.609 -7.050 -4.579 -0.210 -0.510 -0.833 0.905 MR 32 29 6 34 6 25 48 591 1232 -12.132 -10.861 -6.770 -10.839 -0.018 -9.053 -0.033 -5.125 1.563 -4.708 D 33 29 6 34 6 21 43 587 1228 -12.419 -11.118 -6.915 -7.597 -7.614 -0.028 IL 34 34 5 34 6 24 47 592 1232 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 25 48 592 1232 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 9 216 g c - - MP 36 35 6 40 6 24 47 590 1231 -16.850 -16.789 -0.017 -15.565 -6.407 -16.240 -11.094 -7.039 -6.256 -0.481 -5.351 -9.441 2.025 -8.643 -11.006 2.752 -8.251 -3.072 0.615 -8.783 1.470 -9.704 ML 37 35 6 40 6 22 45 589 1229 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 24 47 590 1231 -0.101 -10.861 -4.350 -10.839 -5.973 -9.053 -4.102 -4.014 -0.184 1.585 D 39 35 6 40 6 21 43 587 1228 -12.419 -11.118 -6.915 -0.191 -7.614 -3.185 IL 40 40 5 40 6 23 46 589 1230 -7.438 -7.701 -0.021 -9.356 -10.132 -9.792 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 23 45 589 1230 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 11 215 G C - - MP 42 41 6 46 4 22 45 588 1229 -6.464 -6.010 -0.039 -14.700 -10.819 -1.922 -10.637 2.053 -5.442 -7.412 -1.042 -11.327 -6.365 3.086 -7.681 -0.803 0.987 -10.491 -8.841 -8.425 ML 43 41 6 46 4 21 44 587 1228 -6.406 -6.589 -0.070 -5.318 1.915 -4.002 -3.494 -3.699 MR 44 41 6 46 4 20 43 586 1227 -9.919 -8.948 -6.815 -0.017 -2.882 1.926 -5.513 -4.515 D 45 41 6 46 4 20 42 586 1227 -4.962 -4.643 -1.333 -0.914 IL 46 46 5 46 4 22 44 588 1229 -1.010 -8.189 -1.002 -10.675 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 22 45 589 1230 -0.596 -1.567 -9.981 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - U - - - ML 48 47 6 50 3 20 43 586 1227 -16.992 -0.000 -15.646 -6.802 -5.901 -11.703 1.991 D 49 47 6 50 3 19 42 585 1226 -12.024 -0.017 -6.416 IL 50 50 3 50 3 20 43 587 1227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 15 - G - - - ML 51 50 3 53 2 19 42 585 1226 -7.534 -0.008 -2.823 -4.869 1.916 -4.299 D 52 50 3 53 2 18 41 584 1225 -8.445 -0.004 IL 53 53 3 53 2 19 42 585 1226 -5.470 -0.033 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 18 41 584 1225 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 17 553 1193 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 17 553 1193 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 29 50 -0.000 -15.002 -11.955 -15.049 [ MATP 15 ] 17 37 G C - - MP 58 57 1 62 6 2 5 29 50 -7.242 -16.812 -0.010 -15.589 -15.868 -16.264 -10.839 -4.939 -10.658 -0.805 -8.639 -5.265 0.596 -11.347 -4.108 3.527 -7.065 -0.245 0.481 -5.799 -8.861 -9.623 ML 59 57 1 62 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 49 -7.589 -6.318 -2.227 -6.296 -0.490 -4.510 1.120 -0.999 -0.746 -0.455 D 61 57 1 62 6 0 0 26 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 28 50 -6.495 -6.758 -0.040 -8.413 -9.189 -8.850 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 29 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 19 36 C G - - MP 64 63 6 68 6 2 5 27 48 -16.873 -16.812 -0.001 -13.111 -11.215 -16.264 -13.928 -14.210 -4.916 -10.447 -4.160 -6.246 3.961 -12.511 -13.349 -2.429 -13.469 -12.615 -4.263 -13.762 -3.488 -12.151 ML 65 63 6 68 6 1 1 26 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 26 47 -7.589 -6.318 -2.227 -6.296 -0.490 -4.510 -0.132 -1.053 0.915 -0.475 D 67 63 6 68 6 0 0 24 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 27 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 20 35 C G - - MP 70 69 6 74 6 2 4 25 46 -16.872 -16.811 -0.001 -15.588 -11.400 -16.263 -11.167 -5.037 -5.770 -0.319 -4.638 -12.011 3.608 -6.626 -11.026 0.708 -4.506 -3.470 -0.567 -11.350 -1.295 -4.281 ML 71 69 6 74 6 1 1 25 46 -6.593 -6.939 -0.917 -1.348 -6.789 -4.318 0.019 0.342 -0.674 0.127 MR 72 69 6 74 6 1 1 25 45 -8.328 -7.057 -0.919 -7.036 -1.229 -5.249 -0.952 -2.061 1.524 -1.446 D 73 69 6 74 6 0 0 24 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 21 34 G A - - MP 76 75 6 80 4 2 4 23 44 -16.099 -16.306 -0.000 -14.720 -1.970 -1.383 -6.723 -4.730 -3.532 -3.912 -10.681 -13.154 3.776 -6.646 -4.894 0.365 -6.773 -14.417 -12.515 -3.072 ML 77 75 6 80 4 1 1 25 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 24 44 -6.198 -5.227 -0.978 -1.145 1.520 -1.694 -1.393 -1.178 D 79 75 6 80 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - A - - - ML 82 81 6 84 3 1 3 21 42 -17.009 -0.000 -15.663 1.984 -12.715 -4.783 -6.958 D 83 81 6 84 3 0 0 20 41 -7.180 -2.693 -0.254 IL 84 84 3 84 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - G - - - ML 85 84 3 87 3 1 2 20 41 -17.009 -0.000 -15.663 -6.210 -6.339 1.991 -12.275 D 86 84 3 87 3 0 0 19 40 -7.180 -0.607 -1.571 IL 87 87 3 87 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 24 - U - - - ML 88 87 3 90 3 1 2 19 40 -6.060 -0.022 -15.663 -2.671 -1.427 -5.574 1.787 D 89 87 3 90 3 0 0 18 39 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 1 23 44 -1.262 -2.511 -1.295 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - G - - - ML 91 90 3 93 3 1 2 11 30 -16.993 -0.000 -15.647 -6.224 -13.294 1.995 -12.266 D 92 90 3 93 3 0 0 13 31 -11.920 -7.433 -0.009 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - G - - - ML 94 93 3 96 3 1 1 10 28 -16.993 -0.000 -15.647 -7.154 -6.761 1.991 -6.837 D 95 93 3 96 3 0 0 12 30 -11.920 -0.019 -6.311 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - U - - - ML 97 96 3 99 3 1 1 8 27 -2.498 -0.284 -9.465 -4.327 -5.631 -5.140 1.964 D 98 96 3 99 3 0 0 11 29 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 8 26 -4.772 -0.054 -11.962 0.000 0.000 0.000 0.000 [ MATL 25 ] 32 - U - - - ML 100 99 3 102 3 1 1 7 25 -17.007 -0.000 -15.661 -5.298 -3.314 -2.661 1.894 D 101 99 3 102 3 0 0 11 30 -9.141 -0.133 -3.533 IL 102 102 3 102 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 33 - A - - - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.993 -7.414 -7.307 -7.084 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 1 536 1177 -17.009 -0.000 -15.663 IL 108 108 2 108 3 1 1 538 1178 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 38 - G - - - ML 109 108 2 111 5 1 1 536 1177 -15.942 -0.069 -4.411 -15.970 -16.861 -3.193 -5.789 1.927 -3.843 D 110 108 2 111 5 0 0 533 1174 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 536 1177 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 39 128 A U - - MP 112 111 3 116 6 2 2 535 1176 -16.804 -16.743 -0.000 -15.520 -15.800 -16.195 -10.362 -3.076 -4.286 3.005 -7.763 -5.962 0.575 -4.104 -10.391 -2.791 -7.303 -1.894 2.427 -10.614 -1.929 -2.574 ML 113 111 3 116 6 1 1 536 1177 -0.087 -13.690 -4.196 -8.099 -13.540 -11.069 0.813 -7.402 1.158 -7.237 MR 114 111 3 116 6 1 1 532 1172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 526 1167 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 536 1176 -0.875 -10.560 -1.140 -12.215 -12.991 -12.651 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 534 1175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 44 127 U A - - MP 118 117 6 122 6 2 2 533 1174 -16.873 -7.290 -0.010 -12.876 -13.223 -16.264 -11.170 -6.847 -11.170 1.022 -6.195 -12.014 0.608 -10.690 -7.121 0.598 -11.542 -6.397 3.405 -6.760 -2.009 -4.780 ML 119 117 6 122 6 1 1 531 1171 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 530 1170 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 525 1165 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 532 1173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 532 1173 -5.621 -0.046 -9.132 -7.300 -8.406 0.000 0.000 0.000 0.000 [ MATP 32 ] 45 125 G C - - MP 124 123 6 128 6 2 2 531 1172 -7.434 -16.812 -0.008 -15.589 -15.868 -16.264 -10.852 -4.093 -10.671 1.338 -11.801 -8.174 -2.112 -11.361 -5.976 3.289 -7.317 -3.783 1.725 -10.523 -8.875 -9.636 ML 125 123 6 128 6 1 1 529 1170 -6.657 -7.003 -0.863 -1.412 -6.853 -4.383 0.078 -0.802 0.620 -0.262 MR 126 123 6 128 6 1 1 528 1169 -7.276 -6.005 -1.163 -5.983 -1.117 -4.196 0.032 0.321 -0.660 0.131 D 127 123 6 128 6 0 0 523 1163 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 530 1171 -6.316 -6.579 -0.045 -8.234 -9.010 -8.670 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 530 1171 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 47 124 G C - - MP 130 129 6 134 6 2 2 529 1170 -7.557 -16.812 -0.011 -8.927 -15.869 -16.264 -11.464 -3.443 -11.327 -5.791 -12.431 -3.780 0.768 -12.000 -5.199 3.769 -5.008 -1.469 -4.649 -6.759 -9.499 -6.361 ML 131 129 6 134 6 1 1 527 1168 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 525 1166 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 522 1162 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 528 1169 -6.203 -6.466 -0.049 -8.121 -8.898 -8.558 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 528 1168 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 49 123 A U - - MP 136 135 6 140 4 2 2 527 1168 -16.097 -16.304 -0.000 -14.718 -5.576 -5.009 -5.284 3.707 -7.479 -11.981 0.490 -5.073 -11.002 -1.196 -8.031 -3.566 -0.295 -11.318 -4.955 -4.344 ML 137 135 6 140 4 1 1 526 1167 -6.187 -6.369 -0.082 -5.099 -2.716 -2.510 -3.490 1.841 MR 138 135 6 140 4 1 1 522 1163 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 521 1161 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 527 1167 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 526 1167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 50 - C - - - ML 142 141 6 144 3 1 1 525 1166 -17.009 -0.000 -15.663 -5.884 1.791 -5.361 -1.007 D 143 141 6 144 3 0 0 518 1159 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 525 1166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 51 - U - - - ML 145 144 3 147 3 1 1 524 1165 -17.009 -0.000 -15.663 -6.426 -5.359 -5.370 1.978 D 146 144 3 147 3 0 0 515 1155 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 524 1164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 52 - u - - - ML 148 147 3 150 3 1 1 523 1164 -17.009 -0.000 -15.663 0.001 -0.002 -0.002 0.002 D 149 147 3 150 3 0 0 509 1150 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 523 1163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 53 - u - - - ML 151 150 3 153 3 1 1 522 1163 -17.009 -0.000 -15.663 0.001 -0.002 -0.002 0.002 D 152 150 3 153 3 0 0 501 1141 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 521 1161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 54 - u - - - ML 154 153 3 156 3 1 1 521 1162 -17.009 -0.000 -15.663 0.001 -0.002 -0.002 0.002 D 155 153 3 156 3 0 0 484 1125 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 519 1159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 55 - A - - - ML 157 156 3 159 3 1 1 520 1161 -1.763 -0.503 -15.663 1.942 -5.862 -2.824 -11.740 D 158 156 3 159 3 0 0 413 1054 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 562 1202 -0.041 -5.141 -17.782 0.000 0.000 0.000 0.000 [ MATL 41 ] 122 - A - - - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.906 -2.423 -4.913 -4.931 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 7 100 189 -17.009 -0.000 -15.663 IL 165 165 2 165 3 1 8 102 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 129 - U - - - ML 166 165 2 168 2 1 7 100 189 -2.844 -0.216 -3.488 -3.151 -5.770 1.918 D 167 165 2 168 2 0 6 81 169 -8.445 -0.004 IL 168 168 3 168 2 1 8 109 197 -0.300 -2.412 0.000 0.000 0.000 0.000 [ BIF 45 ] - - - - - - B 169 168 3 170 205 0 6 69 117 [ BEGL 46 ] - - - - - - S 170 169 1 171 4 0 0 50 98 -0.086 -8.742 -14.409 -4.173 [ MATP 47 ] 154 185 G C - - MP 171 170 1 175 6 2 2 50 98 -16.788 -6.398 -0.017 -15.503 -15.783 -16.178 -10.756 -4.497 -10.575 -0.081 -11.704 -11.171 0.638 -8.788 -11.013 3.462 -11.259 0.150 0.390 -7.229 -8.779 -9.540 ML 172 170 1 175 6 1 1 51 99 -9.188 -9.534 -4.249 -0.098 -9.384 -6.914 -3.071 -4.466 1.912 -3.812 MR 173 170 1 175 6 1 1 49 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 1 175 6 0 0 35 84 -16.728 -15.426 -11.223 -11.905 -11.923 -0.001 IL 175 175 5 175 6 1 1 49 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 50 98 -1.264 -0.786 -10.630 -8.798 -9.904 0.000 0.000 0.000 0.000 [ MATP 48 ] 155 182 G C - - MP 177 176 6 181 6 2 2 48 96 -6.076 -5.067 -0.066 -15.503 -15.783 -16.178 -5.765 -6.168 -10.712 -2.545 -10.914 -9.163 1.469 -11.026 -6.664 3.211 -11.315 -4.928 1.860 -3.842 -5.901 -7.116 ML 178 176 6 181 6 1 1 50 98 -9.188 -9.534 -4.249 -0.098 -9.384 -6.914 -3.071 -4.466 1.912 -3.812 MR 179 176 6 181 6 1 1 48 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 35 83 -16.728 -15.426 -11.223 -11.905 -11.923 -0.001 IL 181 181 5 181 6 1 1 50 99 -1.097 -0.942 -6.607 -10.344 -11.121 -10.781 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 48 96 -8.204 -4.510 -11.715 -0.600 -1.772 0.000 0.000 0.000 0.000 [ MATP 49 ] 158 180 G C - - MP 183 182 6 187 6 2 2 45 94 -16.724 -16.663 -0.403 -7.841 -5.382 -2.214 -10.690 -7.554 -10.509 0.077 -11.637 -2.919 1.230 -11.198 -6.618 3.500 -5.570 -3.168 -2.589 -1.125 -1.499 -5.412 ML 184 182 6 187 6 1 1 49 97 -9.188 -9.534 -4.249 -0.098 -9.384 -6.914 -3.071 -4.466 1.912 -3.812 MR 185 182 6 187 6 1 1 48 96 -13.156 -11.885 -7.794 -4.306 -0.084 -10.077 -0.710 -2.160 -5.383 1.651 D 186 182 6 187 6 0 0 35 83 -17.021 -15.719 -11.516 -12.198 -12.216 -0.001 IL 187 187 5 187 6 1 1 46 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 46 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 159 179 c g - - MP 189 188 6 193 4 2 2 44 92 -3.336 -5.090 -0.226 -5.938 -10.616 -4.506 -10.614 -1.310 -4.011 -7.221 2.956 -6.717 -10.478 2.629 -10.989 -5.810 0.187 -10.792 -1.463 -7.191 ML 190 188 6 193 4 1 1 48 96 -0.377 -2.467 -4.636 -6.799 -3.156 -3.137 -0.722 1.664 MR 191 188 6 193 4 1 1 47 95 -1.050 -2.974 -1.375 -7.907 0.216 -3.503 -3.997 1.426 D 192 188 6 193 4 0 0 34 83 -7.325 -0.519 -2.340 -3.347 IL 193 193 5 193 4 1 1 48 96 -0.550 -1.660 -10.721 -14.459 0.000 0.000 0.000 0.000 IR 194 194 6 194 3 1 1 22 44 -1.234 -0.842 -5.890 0.000 0.000 0.000 0.000 [ MATL 51 ] 168 - U - - - ML 195 194 6 197 3 1 1 8 27 -16.941 -0.000 -15.595 -1.540 -4.582 -2.975 1.802 D 196 194 6 197 3 0 0 9 28 -13.986 -9.499 -0.002 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 169 - U - - - ML 198 197 3 200 3 1 1 7 25 -16.941 -0.019 -6.249 -2.807 0.730 -4.813 1.113 D 199 197 3 200 3 0 0 8 26 -13.986 -9.499 -0.002 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 170 - U - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -2.059 -0.166 -5.994 1.513 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 [ BEGR 55 ] - - - - - - S 205 169 1 206 3 0 0 35 61 -17.009 -0.092 -4.014 IL 206 206 2 206 3 1 1 37 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 186 - G - - - ML 207 206 2 209 3 1 2 35 61 -5.701 -0.028 -15.571 -3.508 -4.935 1.901 -2.779 D 208 206 2 209 3 0 0 34 60 -14.418 -0.006 -8.024 IL 209 209 3 209 3 1 1 35 61 -5.972 -0.027 -8.672 0.000 0.000 0.000 0.000 [ MATL 57 ] 188 - C - - - ML 210 209 3 212 5 1 1 34 60 -15.942 -0.000 -15.757 -15.970 -16.861 -6.349 1.953 -5.510 -3.407 D 211 209 3 212 5 0 0 32 59 -5.310 -1.154 -4.572 -1.533 -2.859 IL 212 212 3 212 5 1 1 34 60 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 189 211 G C - - MP 213 212 3 217 6 2 2 33 59 -16.873 -6.273 -0.019 -13.249 -11.887 -16.264 -6.301 -3.665 -7.162 1.004 -11.788 -5.188 -2.583 -5.288 -4.675 3.528 -6.093 0.985 -7.120 -3.752 -8.862 -5.502 ML 214 212 3 217 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 215 212 3 217 6 1 1 32 58 -7.311 -6.040 -1.949 -6.018 -0.620 -4.232 -0.021 -0.416 -0.623 0.692 D 216 212 3 217 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 217 217 5 217 6 1 1 32 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 218 218 6 218 5 1 1 32 58 -6.558 -0.024 -10.070 -8.237 -9.343 0.000 0.000 0.000 0.000 [ MATP 59 ] 190 209 C G - - MP 219 218 6 223 6 2 2 31 57 -16.873 -16.812 -0.000 -15.588 -15.868 -16.263 -8.356 -10.863 -6.825 -0.026 -4.177 -12.004 3.144 -7.567 -11.019 -2.805 -6.147 -2.186 1.602 -6.900 1.392 -4.089 ML 220 218 6 223 6 1 1 32 58 -6.559 -6.905 -0.949 -1.314 -6.755 -4.284 0.029 -0.398 -0.569 0.630 MR 221 218 6 223 6 1 1 30 56 -7.893 -6.622 -1.827 -6.600 -0.604 -4.814 1.325 -1.291 -1.025 -0.750 D 222 218 6 223 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 223 223 5 223 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 224 224 6 224 5 1 1 30 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 191 208 A U - - MP 225 224 6 229 6 2 2 29 55 -7.445 -16.812 -0.008 -15.589 -15.868 -16.263 -5.664 -9.478 -8.308 3.473 -11.788 -7.092 -0.894 -7.963 -7.599 2.022 -6.214 -5.184 -4.611 -10.512 -6.845 -2.578 ML 226 224 6 229 6 1 1 31 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 227 224 6 229 6 1 1 29 56 -7.727 -6.456 -1.537 -6.434 -0.767 -4.648 -0.360 0.855 -1.091 -0.085 D 228 224 6 229 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 229 229 5 229 6 1 1 28 54 -6.306 -6.569 -0.045 -8.224 -9.001 -8.661 0.000 0.000 0.000 0.000 IR 230 230 6 230 5 1 1 29 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 193 207 G C - - MP 231 230 6 235 6 2 2 27 53 -7.514 -16.812 -0.023 -6.575 -15.869 -16.264 -10.847 -2.016 -10.666 -0.191 -11.796 -6.836 -4.585 -5.973 -2.073 3.710 -11.348 -2.252 0.341 -7.102 -8.870 -9.631 ML 232 230 6 235 6 1 1 31 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 233 230 6 235 6 1 1 29 55 -7.491 -6.220 -2.129 -6.199 -0.531 -4.412 -0.181 -0.494 -0.801 0.875 D 234 230 6 235 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 235 235 5 235 6 1 1 25 51 -6.243 -6.506 -0.047 -8.161 -8.937 -8.597 0.000 0.000 0.000 0.000 IR 236 236 6 236 5 1 1 28 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 195 206 G C - - MP 237 236 6 241 4 2 2 18 44 -16.084 -16.291 -0.000 -14.705 -14.841 -2.964 -17.434 -8.910 -16.446 -4.275 -10.717 -16.767 -4.910 3.956 -4.951 -2.388 -11.088 -4.501 -13.178 -16.688 ML 238 236 6 241 4 1 1 31 58 -8.317 -0.058 -5.066 -7.229 -5.278 -6.964 1.982 -6.024 MR 239 236 6 241 4 1 1 28 54 -5.377 -4.406 -2.273 -0.470 -0.152 0.600 -0.862 0.048 D 240 236 6 241 4 0 0 27 53 -4.568 -4.250 -2.265 -0.520 IL 241 241 5 241 4 1 1 31 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 242 242 6 242 3 1 1 30 57 -1.014 -0.992 -8.883 0.000 0.000 0.000 0.000 [ MATL 63 ] 196 - U - - - ML 243 242 6 245 3 1 1 13 32 -17.009 -0.000 -15.663 -7.065 -5.862 -6.128 1.986 D 244 242 6 245 3 0 0 18 36 -7.033 -0.690 -1.425 IL 245 245 3 245 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 197 - U - - - ML 246 245 3 248 3 1 1 12 31 -17.009 -0.000 -15.663 -7.137 -6.192 -7.185 1.990 D 247 245 3 248 3 0 0 18 36 -6.174 -1.687 -0.566 IL 248 248 3 248 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 198 - C - - - ML 249 248 3 251 3 1 1 11 29 -17.009 -0.000 -15.663 -3.147 1.918 -6.141 -3.400 D 250 248 3 251 3 0 0 17 35 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 199 - G - - - ML 252 251 3 254 3 1 1 9 28 -17.009 -0.000 -15.663 -0.285 -6.784 1.661 -6.911 D 253 251 3 254 3 0 0 16 34 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 200 - A - - - ML 255 254 3 257 3 1 1 8 26 -17.009 -0.000 -15.663 1.988 -7.362 -7.274 -5.640 D 256 254 3 257 3 0 0 14 33 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 201 - A - - - ML 258 257 3 260 3 1 1 6 12 -7.575 -0.008 -15.663 1.913 -6.739 -2.246 -6.296 D 259 257 3 260 3 0 0 5 12 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 7 13 -4.334 -0.085 -7.034 0.000 0.000 0.000 0.000 [ MATL 69 ] 203 - U - - - ML 261 260 3 263 2 1 1 1 1 * 0.000 -6.674 -2.016 -6.070 1.898 D 262 260 3 263 2 0 0 0 0 * 0.000 IL 263 263 3 263 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 264 263 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Ser ACC euk-Ser-r2-031616 LENG 82 MAXL 584 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 13:00:10 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Ser-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Ser-r2-031616.sto NSEQ 2001 EFFN 8.331648 CKSUM 3167817025 STATS LOCAL MSV -8.5896 0.71868 STATS LOCAL VITERBI -9.4778 0.71868 STATS LOCAL FORWARD -3.7340 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58420 1.43184 1.20924 1.35636 1.38629 1.38629 1.38629 1.38629 0.02082 4.57539 4.57539 1.46634 0.26236 0.00000 * 1 2.05136 2.74064 0.31081 2.60293 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04279 4.57539 3.45516 1.46634 0.26236 1.09861 0.40547 2 1.71871 1.49133 1.26546 1.15989 3 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02567 4.55388 4.21171 1.46634 0.26236 1.62246 0.21991 3 1.57638 0.93079 1.96293 1.35252 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 4.54957 4.54957 1.46634 0.26236 1.35776 0.29738 4 1.42753 2.49811 0.53045 2.41335 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03036 3.94379 4.55388 1.08918 0.41022 1.00661 0.45485 5 1.51964 1.31111 1.78691 1.06650 8 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02109 4.56280 4.56280 1.46634 0.26236 0.75141 0.63809 6 2.13786 1.30705 1.09518 1.28374 9 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03011 4.57305 3.94603 1.46634 0.26236 0.96728 0.47822 7 1.43654 2.47765 0.60529 2.02194 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02994 3.95784 4.56636 1.08983 0.40988 1.35378 0.29876 8 3.66150 3.46274 4.24365 0.07407 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.02101 4.56643 4.56643 1.46634 0.26236 0.72676 0.66063 9 2.72547 3.65718 0.13681 3.30915 15 G - - , 1.38629 1.38629 1.38629 1.38629 0.02525 4.23550 4.56007 1.09536 0.40710 1.09861 0.40547 10 1.98070 2.21761 0.44981 2.15925 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02606 4.17182 4.57530 1.03784 0.43729 1.10377 0.40290 11 5.04678 0.03419 4.76844 3.97972 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.02114 4.57530 4.54532 1.46634 0.26236 1.10377 0.40290 12 2.21958 0.64933 1.82824 1.56901 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02111 4.57499 4.54873 1.46634 0.26236 1.08383 0.41294 13 1.86284 1.87847 0.67850 1.68974 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02083 4.57502 4.57502 1.46634 0.26236 1.08629 0.41168 14 0.04773 4.46689 3.85883 4.26634 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57530 4.57530 1.46634 0.26236 1.10377 0.40290 15 3.87969 4.75135 0.04149 4.47938 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57530 4.57530 1.46634 0.26236 1.08838 0.41062 16 2.60668 2.23075 3.36766 0.24296 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03273 3.82148 4.57546 0.76970 0.62204 1.09861 0.40547 17 3.99485 5.13225 0.03478 4.61877 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02938 4.57546 3.98199 1.46634 0.26236 1.09861 0.40547 18 3.92120 4.78916 0.04156 4.37614 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02100 4.56708 4.56708 1.46634 0.26236 0.74423 0.64455 19 3.05514 3.06870 3.56229 0.13008 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.17282 1.91507 4.47570 0.16441 1.88645 1.09861 0.40547 20 3.00716 2.78580 3.01260 0.17468 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02084 4.57438 4.57438 1.46634 0.26236 1.03322 0.43984 21 0.03903 4.54228 4.19460 4.37748 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 22 0.76121 1.90053 1.69152 1.61360 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.02089 4.57546 4.56849 1.46634 0.26236 1.09861 0.40547 23 1.82468 1.96940 0.57042 2.01064 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.02082 4.57539 4.57539 1.46634 0.26236 1.09398 0.40779 24 4.16636 4.83715 0.03114 4.93072 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 25 2.31730 0.54181 2.09594 1.62551 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 26 2.89559 3.87479 0.11784 3.34841 38 G - - , 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 27 1.16468 1.58291 1.81731 1.13901 39 u - - < 1.38629 1.38629 1.38629 1.38629 0.05666 3.10595 4.57546 0.92844 0.50281 1.09861 0.40547 28 1.92439 1.50934 1.84297 0.74521 44 u - - < 1.38629 1.38629 1.38629 1.38629 0.02089 4.57546 4.56886 1.46634 0.26236 1.09861 0.40547 29 1.66789 2.55753 0.56917 1.78460 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.21432 4.57539 1.07590 0.41702 1.09422 0.40767 30 2.08276 2.21156 0.36962 2.59171 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.02503 4.23928 4.57546 1.09888 0.40533 1.09861 0.40547 31 0.76419 1.75007 1.64108 1.79121 49 a - - < 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 32 3.11488 0.23820 3.66680 1.95182 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 33 3.24186 3.10788 3.64256 0.11650 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 34 1.28796 1.49738 1.51419 1.27130 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 35 1.28796 1.49738 1.51419 1.27130 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 36 1.28796 1.49738 1.51419 1.27130 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 37 0.09523 3.86028 3.03826 3.82336 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.28585 1.43414 4.57546 3.54127 0.02940 1.09861 0.40547 38 0.14828 2.85449 3.28596 3.15065 122 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02243 4.57546 4.43285 1.46634 0.26236 1.09861 0.40547 39 1.99710 1.78318 1.60881 0.70109 123 u - - > 1.38629 1.38629 1.38629 1.38629 0.02085 4.57388 4.57388 1.46634 0.26236 1.00583 0.45530 40 2.85834 0.42713 2.10811 1.77910 124 C - - > 1.38629 1.38629 1.38629 1.38629 0.02091 4.57546 4.56700 1.46634 0.26236 1.09861 0.40547 41 1.90203 0.62671 2.39098 1.49234 125 C - - > 1.38629 1.38629 1.38629 1.38629 0.02589 4.18290 4.57537 1.04759 0.43199 1.09298 0.40829 42 0.83441 1.97230 1.35045 1.78612 127 a - - > 1.38629 1.38629 1.38629 1.38629 0.05866 4.57546 3.06460 1.46634 0.26236 1.09861 0.40547 43 1.28736 2.02976 1.38989 1.06847 128 u - - > 1.38629 1.38629 1.38629 1.38629 0.02161 4.53841 4.53841 1.46634 0.26236 0.36564 1.18335 44 2.89385 2.77920 3.54922 0.15806 129 U - - , 1.38629 1.38629 1.38629 1.38629 0.13731 2.14748 4.46327 1.60293 0.22478 1.09861 0.40547 45 1.90167 2.21210 0.46493 2.18009 154 G - - < 1.38629 1.38629 1.38629 1.38629 0.06444 4.57423 2.95470 1.46634 0.26236 1.13743 0.38661 46 2.14401 1.67341 0.73730 1.52875 155 g - - < 1.38629 1.38629 1.38629 1.38629 0.05488 3.86713 3.42715 0.83111 0.57193 1.96983 0.15022 47 1.85946 1.98399 0.52378 2.16763 158 G - - < 1.38629 1.38629 1.38629 1.38629 0.23611 4.50960 1.61292 1.46634 0.26236 1.19015 0.36266 48 2.13812 1.02115 1.19878 1.51239 159 c - - < 1.38629 1.38629 1.38629 1.38629 0.13659 2.26884 3.71977 1.15411 0.37883 0.17618 1.82306 49 2.25083 2.78499 2.93313 0.24881 168 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02852 4.54629 4.04467 1.46634 0.26236 1.75617 0.18959 50 2.27370 1.01010 2.97347 0.73031 169 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02582 4.53936 4.21264 1.46634 0.26236 1.34300 0.30254 51 2.22160 1.55977 3.05509 0.45529 170 U - - _ 1.38629 1.38629 1.38629 1.38629 0.17268 2.24059 2.95270 1.05014 0.43061 1.01921 0.44766 52 1.72973 1.28410 0.92687 1.89727 179 g - - > 1.38629 1.38629 1.38629 1.38629 0.02682 4.51351 4.16660 1.46634 0.26236 1.11261 0.39854 53 2.59125 0.56716 1.83539 1.61753 180 C - - > 1.38629 1.38629 1.38629 1.38629 0.04665 3.35836 4.52969 0.53512 0.88093 1.99375 0.14640 54 1.66286 0.79646 1.56100 1.90008 182 c - - > 1.38629 1.38629 1.38629 1.38629 0.03112 3.91933 4.52969 1.03669 0.43793 1.99375 0.14640 55 2.35782 0.56796 2.08639 1.53917 185 C - - > 1.38629 1.38629 1.38629 1.38629 0.07441 4.52969 2.79817 1.46634 0.26236 0.31796 1.30060 56 2.73470 3.50944 0.16162 2.91118 186 G - - , 1.38629 1.38629 1.38629 1.38629 0.03697 3.66988 4.52638 0.70461 0.68181 0.30442 1.33770 57 3.77055 0.09079 4.10379 3.05258 188 C - - , 1.38629 1.38629 1.38629 1.38629 0.02082 4.57538 4.57538 1.46634 0.26236 1.10112 0.40421 58 1.72202 2.68621 0.38904 2.58426 189 G - - < 1.38629 1.38629 1.38629 1.38629 0.02102 4.57538 4.55693 1.46634 0.26236 1.10112 0.40421 59 2.17023 0.84735 2.11474 1.08875 190 c - - < 1.38629 1.38629 1.38629 1.38629 0.02082 4.57519 4.57519 1.46634 0.26236 1.10121 0.40417 60 0.85603 2.44753 0.91262 2.43981 191 a - - < 1.38629 1.38629 1.38629 1.38629 0.02538 4.21634 4.57525 1.07787 0.41600 1.09777 0.40588 61 1.88200 2.72726 0.39272 2.23399 193 G - - < 1.38629 1.38629 1.38629 1.38629 0.02516 4.23057 4.57533 1.09091 0.40934 1.10278 0.40339 62 2.83212 3.62358 0.12265 3.51144 195 G - - < 1.38629 1.38629 1.38629 1.38629 0.02082 4.57533 4.57533 1.46634 0.26236 1.10278 0.40339 63 3.34718 3.20445 3.78199 0.10374 196 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57533 4.57533 1.46634 0.26236 1.09033 0.40963 64 3.46908 3.31701 3.95454 0.09055 197 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 65 3.18611 0.12527 4.01059 2.84242 198 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 66 1.61406 3.56402 0.30924 3.25462 199 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 67 0.04452 4.41773 4.12143 4.18256 200 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 68 0.12013 3.77614 2.75362 3.62736 201 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02497 4.24364 4.57546 1.10296 0.40330 1.09861 0.40547 69 3.14222 2.50974 3.60011 0.16463 203 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02915 3.99386 4.57546 0.89199 0.52736 1.09861 0.40547 70 3.76073 0.14016 3.50442 2.55810 206 C - - > 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 71 2.34680 0.45195 2.54724 1.66263 207 C - - > 1.38629 1.38629 1.38629 1.38629 0.02082 4.57546 4.57546 1.46634 0.26236 1.09861 0.40547 72 2.73853 0.99923 2.28534 0.76479 208 u - - > 1.38629 1.38629 1.38629 1.38629 0.02088 4.57546 4.56927 1.46634 0.26236 1.09861 0.40547 73 1.47704 2.33980 0.63243 1.93767 209 G - - > 1.38629 1.38629 1.38629 1.38629 0.03112 3.89542 4.57539 0.82013 0.58049 1.09449 0.40753 74 2.85980 0.51991 2.51458 1.31957 211 C - - > 1.38629 1.38629 1.38629 1.38629 0.03494 3.81054 4.40636 1.24054 0.34140 1.09861 0.40547 75 2.16042 0.68678 2.31754 1.26226 215 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02086 4.57349 4.57349 1.46634 0.26236 1.15819 0.37696 76 1.76510 1.17235 0.98728 1.92001 216 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02100 4.57349 4.56005 1.46634 0.26236 1.15819 0.37696 77 1.25507 1.92105 1.12784 1.40749 217 g - - ) 1.38629 1.38629 1.38629 1.38629 0.05484 3.63315 3.61445 0.97380 0.47424 1.16243 0.37502 78 2.65603 0.64047 2.41111 1.16151 221 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03809 3.61640 4.55660 0.65530 0.73249 1.56997 0.23326 79 1.56500 2.13635 0.81318 1.47236 223 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03446 3.75608 4.55660 0.73949 0.64885 0.99836 0.45963 80 1.35121 1.81870 1.28923 1.19285 226 u - - ) 1.38629 1.38629 1.38629 1.38629 0.04252 3.46678 4.56466 0.71356 0.67314 0.68442 0.70196 81 2.77463 0.37502 2.55218 1.75770 229 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03799 3.61274 4.57539 1.21211 0.35321 1.09861 0.40547 82 2.07418 3.30292 0.25379 2.78525 233 G - - : 1.38629 1.38629 1.38629 1.38629 0.01046 4.56503 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Thr ACC euk-Thr-r2-031616 STATES 233 NODES 62 CLEN 73 W 700 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 13:37:40 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Thr-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Thr-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Thr-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Thr-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Thr-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Thr-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Thr-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2007 EFFN 2007.000000 CKSUM 2598227121 NULL 0.000 0.000 0.000 0.000 EFP7GF -15.3045 0.71877 ECMLC 0.66455 -7.06907 2.13074 1600000 542437 0.002212 ECMGC 0.33249 -41.06653 -28.70093 1600000 24414 0.016384 ECMLI 0.68079 -6.12661 2.70883 1600000 491457 0.002442 ECMGI 0.35346 -37.84980 -26.19648 1600000 24598 0.016261 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 700 1469 -15.898 -17.143 -0.002 -9.774 IL 1 1 2 1 4 20 45 703 1471 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 47 703 1471 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 197 - A - - MR 3 2 3 5 5 26 53 702 1470 -5.282 -0.038 -15.760 -15.972 -16.864 1.395 -5.934 -2.788 0.273 D 4 2 3 5 5 18 41 700 1469 -7.140 -0.172 -4.766 -6.197 -4.192 IR 5 5 3 5 5 23 52 704 1472 -0.595 -1.569 -12.576 -10.743 -11.849 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 193 G C - - MP 6 5 3 10 6 26 52 701 1469 -16.878 -16.817 -0.012 -10.845 -7.079 -16.268 -2.315 -3.660 -1.104 -1.205 -11.793 -4.497 -5.439 -11.353 -6.427 3.792 -7.069 -1.166 -1.287 -5.427 -8.867 -9.628 ML 7 5 3 10 6 19 41 698 1467 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 41 697 1465 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 37 692 1460 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 42 700 1468 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 42 699 1468 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 192 C G - - MP 12 11 6 16 6 26 50 699 1467 -16.866 -16.805 -0.000 -15.582 -15.862 -16.257 -11.154 -4.171 -6.804 -4.877 -6.193 -5.709 3.056 -6.959 -6.672 2.407 -2.791 -2.082 0.480 -5.395 -1.211 -9.736 ML 13 11 6 16 6 19 42 697 1466 -7.583 -7.929 -0.390 -2.338 -7.779 -5.308 1.495 -1.632 -1.337 -1.111 MR 14 11 6 16 6 20 44 695 1463 -11.281 -10.010 -4.807 -9.988 -0.061 -8.202 -4.826 -6.449 1.975 -5.563 D 15 11 6 16 6 14 37 691 1459 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 41 698 1466 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 42 697 1466 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 191 C G - - MP 18 17 6 22 6 24 48 697 1465 -16.867 -16.806 -0.000 -15.583 -15.863 -16.258 -7.731 -10.767 -4.385 -1.131 -4.230 -4.132 3.452 -7.347 -10.916 0.768 -2.271 -3.770 0.518 -7.274 -0.001 -6.655 ML 19 17 6 22 6 18 40 694 1463 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 20 43 694 1462 -11.253 -9.982 -5.891 -9.960 -0.033 -8.174 -4.798 -6.418 1.975 -5.535 D 21 17 6 22 6 14 37 689 1458 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 19 41 696 1464 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 42 696 1464 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 190 c g - - MP 24 23 6 28 6 22 46 695 1463 -7.164 -16.806 -0.011 -10.939 -13.107 -16.258 -4.982 -6.094 -4.969 -0.086 -3.815 -3.916 2.421 -3.803 -4.884 0.683 -3.335 1.024 1.639 -4.590 1.232 -2.842 ML 25 23 6 28 6 18 40 693 1461 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 43 693 1461 -11.253 -9.982 -5.891 -9.960 -0.033 -8.174 1.978 -5.959 -5.366 -5.595 D 27 23 6 28 6 14 37 688 1457 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 45 694 1462 -6.562 -6.825 -0.038 -8.480 -9.256 -8.917 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 41 694 1462 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 189 c g - - MP 30 29 6 34 6 20 44 693 1461 -16.866 -6.610 -0.015 -15.582 -15.862 -16.257 -8.373 -3.801 -7.630 -0.402 -5.375 -7.251 2.928 -6.324 -6.065 1.334 -2.970 0.310 1.139 -4.459 0.424 -6.008 ML 31 29 6 34 6 18 41 691 1460 -7.518 -7.864 -0.411 -2.273 -7.714 -5.244 -0.202 -0.876 0.587 0.115 MR 32 29 6 34 6 19 42 692 1460 -11.271 -10.000 -5.105 -9.978 -0.051 -8.192 -4.816 -6.438 1.975 -5.553 D 33 29 6 34 6 13 37 687 1456 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 40 692 1460 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 43 692 1460 -6.236 -0.030 -9.747 -7.914 -9.020 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 187 c g - - MP 36 35 6 40 6 18 42 691 1459 -16.867 -16.806 -0.013 -8.081 -7.627 -16.258 -11.104 -10.824 -11.112 0.108 -3.117 -8.301 2.547 -7.620 -10.978 1.574 -11.494 -2.157 1.727 -3.589 1.067 -1.929 ML 37 35 6 40 6 17 39 690 1458 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 18 41 691 1459 -0.109 -9.982 -5.891 -9.960 -4.316 -8.174 -5.046 -4.602 -5.872 1.968 D 39 35 6 40 6 13 36 686 1455 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 41 690 1458 -6.593 -6.855 -0.037 -8.511 -9.287 -8.947 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 40 690 1458 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 186 g c - - MP 42 41 6 46 4 16 40 689 1457 -6.626 -6.895 -0.027 -14.712 -8.373 -5.179 -4.099 2.109 -11.780 -5.806 -4.544 -11.339 -4.770 2.536 -11.334 -0.893 2.346 -4.903 -4.660 -7.856 ML 43 41 6 46 4 16 40 689 1458 -0.159 -7.092 -3.658 -5.821 -3.774 -3.438 -4.567 1.923 MR 44 41 6 46 4 15 39 688 1456 -8.810 -7.839 -0.108 -3.928 -2.776 -5.169 1.919 -4.518 D 45 41 6 46 4 13 36 686 1454 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 39 688 1457 -1.248 -8.280 -0.798 -10.766 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 39 688 1456 -4.931 -0.056 -7.631 0.000 0.000 0.000 0.000 [ MATL 9 ] 12 - U - - - ML 48 47 6 50 3 14 38 687 1455 -17.013 -0.000 -15.667 -6.328 -6.901 -7.056 1.990 D 49 47 6 50 3 12 36 685 1453 -7.009 -2.522 -0.290 IL 50 50 3 50 3 14 38 687 1456 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 13 - A - - - ML 51 50 3 53 2 13 37 686 1454 -17.669 -0.000 1.012 -6.750 0.975 -6.768 D 52 50 3 53 2 12 36 685 1453 -8.512 -0.004 IL 53 53 3 53 2 13 37 686 1455 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 12 36 685 1453 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 3 169 370 -17.013 -0.000 -15.667 IL 56 56 2 56 3 1 4 176 377 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 136 - A - - - ML 57 56 2 59 3 1 3 169 370 -6.197 -0.138 -3.688 1.717 -4.608 -1.476 -1.682 D 58 56 2 59 3 0 1 191 392 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 146 347 -1.319 -0.744 -9.001 0.000 0.000 0.000 0.000 [ MATL 45 ] 139 - G - - - ML 60 59 3 62 3 1 2 140 341 -7.641 -0.008 -11.342 -2.519 -5.611 1.882 -3.066 D 61 59 3 62 3 0 1 195 396 -0.173 -3.170 -9.140 IL 62 62 3 62 3 1 2 197 398 -0.132 -3.516 -14.167 0.000 0.000 0.000 0.000 [ MATL 46 ] 158 - a - - - ML 63 62 3 65 3 1 1 28 47 -6.938 -0.087 -4.312 0.897 -6.962 0.871 -1.728 D 64 62 3 65 3 0 0 27 45 -7.578 -3.091 -0.189 IL 65 65 3 65 3 1 1 28 47 -4.904 -0.057 -7.604 0.000 0.000 0.000 0.000 [ MATL 47 ] 160 - U - - - ML 66 65 3 68 3 1 2 27 46 -16.938 -0.000 -15.592 -1.453 -3.632 -5.677 1.822 D 67 65 3 68 3 0 0 27 45 -14.134 -0.014 -6.745 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 161 - C - - - ML 69 68 3 71 5 1 1 26 45 -15.946 -0.001 -11.116 -15.974 -16.865 -5.542 1.812 -5.532 -1.166 D 70 68 3 71 5 0 0 25 43 -5.905 -1.749 -5.167 -0.819 -3.454 IL 71 71 3 71 5 1 1 28 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 162 184 c g - - MP 72 71 3 76 6 2 2 25 44 -6.691 -7.163 -0.024 -15.592 -15.872 -16.267 -11.078 -4.502 -6.670 2.148 -2.650 -11.780 2.595 -5.605 -11.045 1.988 -8.315 -1.352 -0.189 -11.089 -4.265 -9.716 ML 73 71 3 76 6 1 1 24 43 -7.421 -7.767 -1.415 -0.783 -7.617 -5.147 -0.155 -0.802 0.469 0.194 MR 74 71 3 76 6 1 1 24 43 -7.871 -6.600 -2.509 -6.579 -0.390 -4.792 -0.405 -1.392 1.192 -0.790 D 75 71 3 76 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 24 43 -7.019 -7.282 -0.027 -8.937 -9.713 -9.373 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 24 43 -5.738 -0.042 -9.249 -7.417 -8.523 0.000 0.000 0.000 0.000 [ MATP 50 ] 164 182 u a - - MP 78 77 6 82 6 2 2 23 42 -16.877 -16.816 -0.000 -15.592 -15.872 -16.267 -8.390 -10.840 -11.130 -0.304 -6.228 -8.603 2.271 -7.823 -8.848 1.333 -11.510 -2.370 2.639 -4.159 0.394 -5.314 ML 79 77 6 82 6 1 1 23 41 -7.107 -7.453 -0.577 -1.862 -7.303 -4.832 1.239 -1.156 -0.898 -0.611 MR 80 77 6 82 6 1 1 23 42 -7.871 -6.600 -0.658 -6.579 -1.712 -4.792 1.312 -1.269 -1.004 -0.728 D 81 77 6 82 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 165 181 G C - - MP 84 83 6 88 6 2 2 21 40 -7.198 -16.817 -0.010 -15.593 -15.873 -16.268 -8.162 -4.746 -10.684 1.037 -7.786 -11.288 0.481 -11.308 -7.920 3.204 -11.355 -2.922 0.907 -6.131 0.335 -7.779 ML 85 83 6 88 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 21 39 -6.540 -6.803 -0.038 -8.458 -9.234 -8.895 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 167 180 G C - - MP 90 89 6 94 6 2 2 19 38 -16.878 -16.817 -0.000 -15.593 -15.873 -16.268 -10.844 -4.470 -10.662 1.619 -11.793 -6.539 -0.247 -5.614 -6.898 3.546 -6.381 -2.528 -3.101 -5.905 -8.867 -9.627 ML 91 89 6 94 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 168 179 G C - - MP 96 95 6 100 4 2 2 17 36 -7.231 -16.311 -0.010 -14.725 -14.861 -4.926 -17.455 -8.930 -16.466 -4.972 -10.737 -16.788 -12.805 3.982 -4.663 -4.058 -11.108 -4.928 -13.198 -16.710 ML 97 95 6 100 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 20 39 -5.821 -6.505 -0.045 -8.990 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 170 - U - - - ML 102 101 6 104 3 1 1 13 32 -17.013 -0.000 -15.667 -6.435 -6.642 -6.824 1.989 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 171 - U - - - ML 105 104 3 107 3 1 1 12 30 -17.013 -0.000 -15.667 -6.066 -4.970 -6.988 1.980 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 172 - C - - - ML 108 107 3 110 3 1 1 11 29 -17.013 -0.000 -15.667 -6.418 1.959 -7.026 -3.428 D 109 107 3 110 3 0 0 16 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 173 - G - - - ML 111 110 3 113 3 1 1 9 27 -7.279 -0.009 -15.667 0.540 -6.797 1.335 -6.047 D 112 110 3 113 3 0 0 14 32 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 11 29 -4.598 -0.070 -7.298 0.000 0.000 0.000 0.000 [ MATL 58 ] 175 - A - - - ML 114 113 3 116 3 1 1 8 26 -17.013 -0.000 -15.667 1.991 -12.785 -6.280 -6.466 D 115 113 3 116 3 0 0 14 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 176 - u - - - ML 117 116 3 119 3 1 1 6 11 -6.648 -0.015 -12.934 0.633 -1.177 -2.369 0.858 D 118 116 3 119 3 0 0 5 10 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 6 11 -5.170 -0.047 -7.870 0.000 0.000 0.000 0.000 [ MATL 60 ] 178 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -5.567 0.164 -6.967 1.511 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 15 662 1430 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 1 15 662 1430 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 1 26 43 -0.000 -15.006 -14.414 -15.054 [ MATP 15 ] 14 36 G C - - MP 127 126 1 131 6 2 3 26 43 -16.878 -16.817 -0.000 -15.593 -15.873 -16.268 -14.850 -7.298 -17.383 -1.962 -16.460 -4.982 -10.736 -16.746 -4.122 3.838 -12.992 0.272 -11.106 -2.829 -13.195 -16.598 ML 128 126 1 131 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 35 C G - - MP 133 132 6 137 6 2 3 24 41 -16.878 -16.817 -0.000 -15.593 -15.873 -16.268 -13.933 -14.215 -4.645 -10.452 -5.850 -4.476 3.910 -12.516 -13.354 -10.423 -2.634 -12.619 -0.676 -13.767 -3.759 -12.156 ML 134 132 6 137 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 34 U A - - MP 139 138 6 143 6 2 3 22 39 -16.878 -6.136 -0.021 -15.593 -15.873 -16.268 -7.286 -10.879 -11.178 -0.354 -5.682 -12.021 1.203 -10.696 -8.022 0.969 -11.549 -8.445 3.383 -5.296 -1.119 -8.202 ML 140 138 6 143 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 21 39 -6.692 -0.022 -10.203 -8.371 -9.477 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 32 c g - - MP 145 144 6 149 4 2 3 20 36 -16.104 -16.311 -0.000 -14.725 1.076 -4.230 -12.646 -5.909 -2.730 -0.908 2.749 -12.020 -2.115 -8.678 -12.934 -10.706 2.202 -5.811 0.071 -0.970 ML 146 144 6 149 4 1 1 25 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - - - ML 151 150 6 153 3 1 2 17 34 -17.013 -0.000 -15.667 1.991 -6.778 -6.023 -12.145 D 152 150 6 153 3 0 0 20 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - G - - - ML 154 153 3 156 3 1 2 16 32 -17.013 -0.000 -15.667 -2.282 -6.537 1.911 -5.446 D 155 153 3 156 3 0 0 19 37 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - U - - - ML 157 156 3 159 3 1 2 15 31 -1.467 -0.648 -15.667 -4.157 -1.498 -2.243 1.756 D 158 156 3 159 3 0 0 16 34 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 2 15 31 -2.412 -0.300 -13.241 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - G - - - ML 160 159 3 162 3 1 2 11 29 -17.013 -0.000 -15.667 -5.531 -5.014 1.977 -6.617 D 161 159 3 162 3 0 0 16 35 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - G - - - ML 163 162 3 165 3 1 2 9 28 -17.013 -0.000 -15.667 -6.387 -7.114 1.986 -5.780 D 164 162 3 165 3 0 0 15 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - U - - - ML 166 165 3 168 3 1 1 8 26 -5.640 -0.788 -1.320 -3.714 -0.324 -4.870 1.628 D 167 165 3 168 3 0 0 7 25 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 8 27 -6.123 -0.024 -8.823 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - U - - - ML 169 168 3 171 3 1 1 7 26 -16.275 -0.000 -14.929 -0.926 -0.565 -3.552 1.440 D 170 168 3 171 3 0 0 6 24 -17.113 -0.001 -11.505 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.956 -4.870 -3.985 -5.481 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 0 646 1414 -17.013 -0.001 -10.760 IL 177 177 2 177 3 1 1 647 1415 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - G - - - ML 178 177 2 180 5 1 1 646 1414 -15.946 -0.035 -5.372 -15.973 -16.865 -0.032 -7.009 1.583 -5.884 D 179 177 2 180 5 0 0 644 1412 -6.302 -0.266 -5.564 -3.939 -3.851 IL 180 180 3 180 5 1 1 645 1414 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 135 C G - - MP 181 180 3 185 6 2 2 645 1413 -16.842 -16.782 -0.000 -15.558 -12.304 -16.233 -11.538 -11.265 -7.358 -2.408 -1.922 -12.259 3.088 -10.986 -11.368 -3.977 -11.849 -3.563 2.652 -11.699 -0.725 -10.093 ML 182 180 3 185 6 1 1 645 1413 -12.396 -0.424 -2.155 -5.113 -12.592 -10.122 -7.155 1.991 -7.618 -6.204 MR 183 180 3 185 6 1 1 642 1410 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 635 1404 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 644 1412 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 644 1412 -1.592 -0.587 -11.113 -9.281 -10.387 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 132 c g - - MP 187 186 6 191 6 2 2 643 1411 -6.649 -7.246 -0.024 -15.592 -15.872 -16.267 -7.771 -6.516 -9.645 1.079 -5.429 -6.399 2.713 -5.407 -9.657 0.618 -5.302 -0.173 2.161 -2.637 -2.626 -6.689 ML 188 186 6 191 6 1 1 641 1409 -7.600 -7.946 -0.385 -2.355 -7.796 -5.325 -0.904 1.289 -1.683 -0.494 MR 189 186 6 191 6 1 1 640 1409 -7.518 -6.247 -0.910 -6.226 -1.359 -4.439 -0.069 -0.976 0.835 -0.407 D 190 186 6 191 6 0 0 634 1402 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 642 1410 -7.060 -7.322 -0.027 -8.978 -9.754 -9.414 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 641 1410 -5.663 -0.045 -9.174 -7.342 -8.448 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 130 g c - - MP 193 192 6 197 6 2 2 641 1409 -16.878 -16.817 -0.000 -15.593 -15.873 -16.268 -6.509 -7.698 -11.133 -0.696 -7.287 -11.953 1.803 -10.727 -7.201 2.560 -8.310 -3.631 2.539 -6.888 -4.206 -7.020 ML 194 192 6 197 6 1 1 638 1406 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 638 1407 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 632 1400 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 639 1408 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 639 1408 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 42 129 G C - - MP 199 198 6 203 6 2 2 639 1407 -16.878 -7.240 -0.027 -15.593 -6.430 -16.268 -10.846 -3.567 -10.665 -1.952 -11.795 -6.221 2.208 -11.355 -4.187 3.331 -8.224 -0.292 -4.827 -4.968 -6.082 -9.630 ML 200 198 6 203 6 1 1 636 1405 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 637 1405 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 631 1399 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 638 1406 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 638 1406 -5.670 -0.044 -9.181 -7.349 -8.455 0.000 0.000 0.000 0.000 [ MATP 34 ] 43 127 u a - - MP 205 204 6 209 4 2 2 637 1405 -16.087 -16.294 -0.000 -14.708 -5.204 -10.845 -11.139 2.090 -0.691 -11.983 1.483 -8.455 -11.000 -1.776 -5.451 -8.421 2.695 -7.813 0.093 -1.220 ML 206 204 6 209 4 1 1 634 1403 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 636 1405 -9.924 -0.039 -6.820 -5.881 1.987 -6.744 -6.100 -6.286 D 208 204 6 209 4 0 0 629 1397 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 636 1404 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 636 1404 -5.375 -0.041 -8.075 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - C - - - ML 211 210 6 213 3 1 1 635 1403 -17.013 -0.000 -15.667 -5.057 1.648 -5.516 -0.299 D 212 210 6 213 3 0 0 626 1395 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 634 1403 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - U - - - ML 214 213 3 216 3 1 1 634 1402 -17.013 -0.000 -15.667 -4.437 -1.907 -10.667 1.882 D 215 213 3 216 3 0 0 622 1391 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 633 1401 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - a - - - ML 217 216 3 219 3 1 1 633 1401 -17.013 -0.000 -15.667 0.051 -0.018 -0.018 -0.015 D 218 216 3 219 3 0 0 616 1385 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 631 1400 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - u - - - ML 220 219 3 222 3 1 1 632 1400 -17.013 -0.000 -15.667 0.001 -0.002 -0.002 0.002 D 221 219 3 222 3 0 0 606 1374 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 630 1398 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - u - - - ML 223 222 3 225 3 1 1 631 1399 -17.013 -0.000 -15.667 0.001 -0.002 -0.002 0.002 D 224 222 3 225 3 0 0 586 1354 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 627 1396 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - A - - - ML 226 225 3 228 3 1 1 630 1398 -1.569 -0.593 -15.667 1.839 -4.169 -1.570 -5.066 D 227 225 3 228 3 0 0 495 1264 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 674 1442 -0.035 -5.400 -18.239 0.000 0.000 0.000 0.000 [ MATL 41 ] 125 - A - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 1.942 -3.124 -7.027 -4.801 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Thr ACC euk-Thr-r2-031616 LENG 73 MAXL 696 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 13:37:41 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Thr-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Thr-r2-031616.sto NSEQ 2007 EFFN 26.111120 CKSUM 2598227121 STATS LOCAL MSV -8.1962 0.71877 STATS LOCAL VITERBI -9.0668 0.71877 STATS LOCAL FORWARD -3.7814 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49034 1.41335 1.23538 1.42439 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 0.00000 * 1 2.15063 3.34651 0.23330 2.87416 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01486 5.52161 4.53250 1.46634 0.26236 1.09861 0.40547 2 2.95675 0.77701 1.15072 1.76128 2 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00809 5.51483 5.51483 1.46634 0.26236 1.51159 0.24918 3 2.66205 0.54163 1.92247 1.59873 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00808 5.51497 5.51497 1.46634 0.26236 1.53787 0.24186 4 2.03091 1.19039 1.46259 1.09947 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01462 4.56632 5.49327 0.65050 0.73769 1.53787 0.24186 5 2.28381 0.89369 1.45287 1.36625 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00809 5.51488 5.51488 1.46634 0.26236 0.57176 0.83133 6 2.26380 1.05400 1.59641 1.06456 7 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01266 5.52146 4.75821 1.46634 0.26236 1.11071 0.39947 7 1.36547 3.24611 0.81605 1.33317 9 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02080 4.10049 5.51687 0.76635 0.62494 0.66748 0.71949 8 4.05148 4.00080 4.54804 0.04739 12 U - - , 1.38629 1.38629 1.38629 1.38629 0.00803 5.52146 5.52146 1.46634 0.26236 1.11071 0.39947 9 0.67608 4.64747 0.75339 4.50634 13 A - - , 1.38629 1.38629 1.38629 1.38629 0.00803 5.52146 5.52146 1.46634 0.26236 1.07484 0.41756 10 3.36367 4.48955 0.06537 4.04844 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 11 5.68070 0.03081 5.15196 3.85677 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 12 2.58764 1.61681 1.95276 0.53719 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 13 1.76866 0.97845 2.30514 1.03902 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 14 0.01612 5.38194 4.91709 5.50355 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 15 2.88589 4.69760 0.08275 4.23373 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 16 3.48246 2.39442 2.93157 0.19270 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.41274 1.09612 5.52161 0.22574 1.59912 1.09861 0.40547 17 4.37985 4.69304 0.02927 4.93956 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 18 4.72374 5.61588 0.02018 4.89870 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 19 3.34326 1.68134 3.98251 0.27455 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.49756 3.80306 0.99511 0.32669 1.27765 1.09861 0.40547 20 1.88441 1.74629 2.95215 0.47572 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01269 5.06640 5.06640 1.46634 0.26236 0.02141 3.85476 21 0.05573 4.11534 3.78207 4.19254 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 22 1.01353 2.30672 0.88502 2.08127 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.02123 4.07425 5.52161 0.41820 1.07361 1.09861 0.40547 23 0.60560 2.01018 1.45203 2.45117 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 24 3.97630 5.67674 0.02564 5.76651 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 25 4.44602 0.13084 4.44995 2.31027 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.00854 5.52161 5.40183 1.46634 0.26236 1.09861 0.40547 26 1.42629 4.32217 0.31806 3.96472 37 G - - , 1.38629 1.38629 1.38629 1.38629 0.00804 5.52110 5.52110 1.46634 0.26236 1.02038 0.44701 27 3.05158 0.69818 2.88951 0.91723 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.52161 5.48204 1.46634 0.26236 1.09861 0.40547 28 1.89269 0.98647 1.76013 1.18934 39 c - - < 1.38629 1.38629 1.38629 1.38629 0.01726 4.33440 5.52145 0.52772 0.89147 1.07241 0.41883 29 2.63072 1.40897 1.09128 1.05616 41 u - - < 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 30 2.52569 1.45342 0.44035 3.16019 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.01877 5.52161 4.22698 1.46634 0.26236 1.09861 0.40547 31 1.42250 1.43293 2.46319 0.83214 43 u - - < 1.38629 1.38629 1.38629 1.38629 0.00812 5.51096 5.51096 1.46634 0.26236 0.43696 1.03845 32 3.54825 0.28554 4.16261 1.58940 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 33 3.65627 2.63287 4.57946 0.11425 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 34 1.30741 1.45439 1.46177 1.33138 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 35 1.33192 1.44479 1.45248 1.32334 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 36 1.33192 1.44479 1.45248 1.32334 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 37 0.14419 3.67821 2.43211 3.85562 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.37927 1.16590 5.52161 3.73735 0.02411 1.09861 0.40547 38 0.06735 3.40758 4.41366 3.91690 125 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01877 4.22698 5.52161 0.47961 0.96502 1.09861 0.40547 39 0.96598 2.61491 1.28691 1.30898 127 a - - > 1.38629 1.38629 1.38629 1.38629 0.01415 4.60051 5.52161 0.66626 0.72078 1.09861 0.40547 40 3.40059 0.52069 1.42283 2.02872 129 C - - > 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 41 1.11161 1.13121 1.34119 2.44421 130 a - - > 1.38629 1.38629 1.38629 1.38629 0.01461 4.60366 5.40639 0.66809 0.71885 1.09861 0.40547 42 1.30467 2.03865 0.92135 1.60668 132 g - - > 1.38629 1.38629 1.38629 1.38629 0.02154 4.38854 4.72261 0.55373 0.85519 1.13851 0.38610 43 0.99187 3.15524 0.63831 2.84209 135 G - - > 1.38629 1.38629 1.38629 1.38629 0.00807 5.51622 5.51622 1.46634 0.26236 0.61687 0.77573 44 0.23137 3.57902 2.37986 2.45235 136 A - - , 1.38629 1.38629 1.38629 1.38629 0.02868 4.10813 4.43693 0.74316 0.64551 1.09861 0.40547 45 2.79807 4.03955 0.12776 3.18443 139 G - - , 1.38629 1.38629 1.38629 1.38629 0.07916 2.63427 5.43983 2.33666 0.10164 0.51642 0.90796 46 0.80617 3.87889 0.80952 2.43395 158 a - - , 1.38629 1.38629 1.38629 1.38629 0.06335 4.47056 2.99694 0.59503 0.80195 1.12386 0.39308 47 2.40666 3.31109 4.15944 0.15339 160 U - - , 1.38629 1.38629 1.38629 1.38629 0.00842 5.47427 5.47427 1.46634 0.26236 0.15389 1.94747 48 3.97147 0.15329 4.38766 2.19963 161 C - - , 1.38629 1.38629 1.38629 1.38629 0.00803 5.52130 5.52130 1.46634 0.26236 1.12386 0.39308 49 1.39378 1.03782 1.29742 2.08424 162 c - - < 1.38629 1.38629 1.38629 1.38629 0.01699 4.35471 5.52130 0.53736 0.87777 1.12386 0.39308 50 2.53032 1.16767 1.73012 0.83930 164 u - - < 1.38629 1.38629 1.38629 1.38629 0.00803 5.52130 5.52130 1.46634 0.26236 1.04995 0.43071 51 1.87110 2.29821 0.57155 1.70949 165 G - - < 1.38629 1.38629 1.38629 1.38629 0.01433 4.58297 5.52161 0.65618 0.73153 1.09861 0.40547 52 1.60818 2.65666 0.37706 3.13066 167 G - - < 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 53 4.39184 5.23164 0.02339 5.22201 168 G - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.59910 5.52161 0.66545 0.72163 1.09861 0.40547 54 4.04404 3.96570 4.50537 0.04870 170 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 55 3.95012 3.71276 4.46408 0.05676 171 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 56 4.64717 0.04562 4.94963 3.57857 172 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 57 1.01168 4.41039 0.49771 4.11522 173 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01397 4.61803 5.52161 0.67647 0.71011 1.09861 0.40547 58 0.01498 5.80036 5.04171 5.22605 175 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 59 1.00123 2.03357 2.50853 0.86675 176 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01734 4.33566 5.49713 0.52824 0.89072 1.09861 0.40547 60 3.70645 1.35421 4.33541 0.35071 178 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52151 5.52151 1.46634 0.26236 1.08236 0.41369 61 5.59521 0.02801 5.10300 4.02699 179 C - - > 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 62 3.37508 0.41188 2.57244 1.48267 180 C - - > 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 63 2.15499 0.60933 1.81447 1.72903 181 C - - > 1.38629 1.38629 1.38629 1.38629 0.00829 5.52161 5.45963 1.46634 0.26236 1.09861 0.40547 64 1.04350 1.82095 0.95426 2.29448 182 g - - > 1.38629 1.38629 1.38629 1.38629 0.01462 4.56825 5.48714 0.64798 0.74045 1.11970 0.39509 65 2.18834 1.40115 1.00998 1.28244 184 g - - > 1.38629 1.38629 1.38629 1.38629 0.01912 4.45726 4.91440 0.58818 0.81044 1.03683 0.43785 66 1.37888 0.91009 2.97394 1.22231 186 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00806 5.51827 5.51827 1.46634 0.26236 0.73725 0.65091 67 1.48625 1.68226 0.79935 1.97901 187 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01789 4.32093 5.41629 0.52139 0.90065 1.09861 0.40547 68 1.72491 1.76837 0.71812 1.81075 189 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00803 5.52116 5.52116 1.46634 0.26236 1.02965 0.44182 69 1.50637 1.94777 0.89145 1.48885 190 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00803 5.52161 5.52161 1.46634 0.26236 1.09861 0.40547 70 1.95590 2.06397 0.43364 2.48330 191 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00851 5.52161 5.40846 1.46634 0.26236 1.09861 0.40547 71 2.00116 1.22940 0.69384 2.62145 192 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00803 5.52113 5.52113 1.46634 0.26236 1.02462 0.44462 72 2.89192 0.27458 2.80227 2.08774 193 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03197 3.59516 5.52064 1.13907 0.38583 1.09861 0.40547 73 0.45878 3.44703 2.88760 1.27155 197 A - - : 1.38629 1.38629 1.38629 1.38629 0.00403 5.51663 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Trp ACC euk-Trp-r2-031616 STATES 230 NODES 61 CLEN 72 W 738 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 14:16:06 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Trp-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Trp-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Trp-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Trp-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Trp-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Trp-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Trp-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 611 EFFN 611.000000 CKSUM 4114863216 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.0082 0.71883 ECMLC 0.69443 -6.32387 2.33500 1600000 490451 0.002447 ECMGC 0.33913 -41.87076 -29.23051 1600000 29089 0.013751 ECMLI 0.67493 -5.93765 2.82488 1600000 444248 0.002701 ECMGI 0.34104 -39.15619 -26.59094 1600000 29048 0.013770 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 738 1550 -14.185 -15.431 -0.000 -11.884 IL 1 1 2 1 4 17 41 740 1552 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 43 741 1553 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 184 - A - - MR 3 2 3 5 5 24 51 740 1551 -5.555 -0.031 -14.050 -14.262 -15.154 1.920 -5.011 -2.590 -5.776 D 4 2 3 5 5 13 38 737 1548 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 21 46 741 1553 -0.625 -1.524 -10.632 -8.799 -9.905 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 180 G C - - MP 6 5 3 10 6 24 51 739 1550 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -9.161 -3.142 -8.980 -0.747 -10.111 -6.132 -1.375 -9.670 -8.605 3.637 -8.740 -1.633 1.065 -5.805 -7.184 -7.946 ML 7 5 3 10 6 15 40 736 1547 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 39 735 1547 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 36 730 1541 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 41 737 1549 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 41 737 1549 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 179 a u - - MP 12 11 6 16 6 22 49 737 1548 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -10.428 -5.689 -5.665 2.979 -3.329 -11.735 2.072 -3.513 -10.262 -1.035 -10.814 1.602 -3.980 -10.925 -7.424 -3.535 ML 13 11 6 16 6 14 39 734 1546 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 39 733 1545 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 36 728 1540 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 40 735 1547 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 41 735 1547 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 178 C G - - MP 18 17 6 22 6 20 47 735 1546 -15.174 -7.128 -0.011 -13.889 -14.169 -14.564 -9.521 -1.915 -5.463 2.304 -6.099 -10.350 3.180 -4.801 -9.378 0.141 -7.060 -6.792 -3.381 -9.700 -1.445 -3.773 ML 19 17 6 22 6 14 39 732 1544 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 39 732 1543 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 36 727 1539 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 40 733 1545 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 42 734 1545 -4.350 -0.114 -7.861 -6.029 -7.135 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 176 c g - - MP 24 23 6 28 6 18 45 733 1544 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -9.406 -8.492 -9.307 -3.242 -8.924 -4.532 2.554 -9.312 -9.441 2.014 -6.424 2.017 -2.912 -4.462 0.745 -5.965 ML 25 23 6 28 6 14 39 730 1542 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 39 730 1542 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 36 726 1537 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 40 732 1543 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 40 731 1543 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 175 c g - - MP 30 29 6 34 6 16 43 731 1542 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -9.115 -8.927 -9.162 -1.238 -6.224 -7.151 2.696 -8.831 -7.093 1.412 -7.184 -0.749 1.252 -3.189 1.399 -0.574 ML 31 29 6 34 6 13 38 728 1540 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 38 728 1540 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 36 725 1537 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 39 730 1541 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 39 729 1541 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 174 g c - - MP 36 35 6 40 6 14 41 729 1540 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -9.465 -9.126 -9.460 -1.374 -2.686 -10.296 1.948 -5.368 -9.333 2.751 -9.841 0.026 1.398 -9.632 0.116 -3.381 ML 37 35 6 40 6 12 38 727 1539 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 38 726 1538 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 36 724 1536 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 39 728 1539 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 38 728 1539 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 173 G C - - MP 42 41 6 46 4 12 39 727 1538 -14.391 -14.598 -0.000 -13.012 -9.147 -5.217 -3.932 -0.334 -10.096 -6.455 -3.003 -9.656 -6.908 3.700 -1.814 -0.230 -0.367 -4.539 -7.170 -7.931 ML 43 41 6 46 4 11 37 726 1537 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 37 725 1537 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 36 724 1535 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 38 726 1538 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 38 726 1538 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 10 37 725 1536 -15.301 -0.000 -13.955 -12.550 -11.190 -14.099 2.000 D 49 47 6 50 3 9 35 723 1535 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 37 725 1537 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 51 50 3 53 2 9 36 724 1535 -15.955 -0.000 0.060 -6.275 1.552 -6.393 D 52 50 3 53 2 8 35 723 1534 -8.445 -0.004 IL 53 53 3 53 2 10 36 724 1536 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 8 35 723 1534 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 2 183 396 -15.301 -0.000 -13.955 IL 56 56 2 56 3 1 3 187 400 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 130 - a - - - ML 57 56 2 59 3 1 2 183 396 -7.116 -0.262 -2.654 0.933 -2.594 0.492 -0.946 D 58 56 2 59 3 0 1 199 412 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 157 370 -3.327 -0.176 -6.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 132 - G - - - ML 60 59 3 62 3 1 2 87 300 -15.051 -0.000 -13.705 -4.082 -10.915 1.943 -3.378 D 61 59 3 62 3 0 0 203 416 -0.444 -1.931 -8.463 IL 62 62 3 62 3 1 2 207 420 -0.125 -3.594 -13.214 0.000 0.000 0.000 0.000 [ MATL 45 ] 151 - G - - - ML 63 62 3 65 3 1 1 30 48 -15.301 -0.041 -5.162 -4.806 -5.476 1.796 -1.088 D 64 62 3 65 3 0 0 31 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 152 - U - - - ML 66 65 3 68 3 1 1 29 47 -15.260 -0.000 -13.914 -2.288 -0.943 -2.089 1.604 D 67 65 3 68 3 0 0 28 46 -11.588 -0.024 -5.980 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 153 - U - - - ML 69 68 3 71 5 1 1 28 46 -14.235 -0.000 -14.050 -14.262 -15.154 -11.085 -0.151 -12.034 1.632 D 70 68 3 71 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 154 172 G U - - MP 72 71 3 76 6 2 2 27 45 -15.174 -6.553 -0.016 -13.889 -14.169 -14.564 -11.066 -9.729 -4.032 1.851 -12.965 -13.513 1.006 -11.318 -4.031 0.556 -2.873 3.103 -8.427 -12.136 -4.252 -9.854 ML 73 71 3 76 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 26 44 -4.798 -0.082 -8.309 -6.477 -7.583 0.000 0.000 0.000 0.000 [ MATP 49 ] 155 170 C G - - MP 78 77 6 82 6 2 2 25 43 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -9.476 -9.177 -4.558 -2.940 -4.098 -10.320 3.471 -4.461 -9.334 1.197 -5.649 -1.424 -0.733 -9.659 0.408 -5.886 ML 79 77 6 82 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 156 169 a u - - MP 84 83 6 88 6 2 2 23 41 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -9.184 -6.803 -9.005 2.986 -10.140 -9.608 -0.072 -9.690 -3.544 2.694 -7.055 -1.137 -5.472 -4.988 -7.214 -4.915 ML 85 83 6 88 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 157 168 G C - - MP 90 89 6 94 6 2 2 21 39 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -10.778 -10.500 -10.558 -6.459 -6.005 -11.097 0.475 -10.028 -7.373 3.332 -10.890 -4.173 2.090 -4.292 -2.878 -9.266 ML 91 89 6 94 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 158 167 G C - - MP 96 95 6 100 4 2 2 19 37 -6.692 -14.598 -0.014 -13.012 -13.156 -4.399 -15.743 -7.226 -14.762 -2.708 -9.033 -15.080 -4.275 3.972 -4.555 -7.671 -9.405 -11.350 -11.494 -14.994 ML 97 95 6 100 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 21 39 -4.744 -5.428 -0.096 -7.913 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 160 - U - - - ML 102 101 6 104 3 1 1 15 33 -15.301 -0.000 -13.955 -5.559 -6.028 -9.537 1.986 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 161 - U - - - ML 105 104 3 107 3 1 1 14 32 -15.301 -0.000 -13.955 -10.832 -10.247 -5.996 1.994 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 162 - C - - - ML 108 107 3 110 3 1 1 12 31 -15.301 -0.000 -13.955 -6.709 1.986 -6.559 -5.786 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 163 - A - - - ML 111 110 3 113 3 1 1 11 30 -15.301 -0.000 -13.955 1.289 -5.582 0.618 -9.982 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 164 - A - - - ML 114 113 3 116 3 1 1 10 28 -15.301 -0.000 -13.955 1.989 -6.448 -10.212 -5.734 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 165 - U - - - ML 117 116 3 119 3 1 1 8 26 -15.301 -0.001 -11.315 0.394 -5.660 -1.543 1.216 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 166 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -10.852 -0.770 -11.751 1.771 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 0 15 699 1511 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 0 15 699 1511 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 26 43 -0.000 -13.299 -12.706 -13.346 [ MATP 15 ] 10 29 G C - - MP 127 126 1 131 6 2 2 26 43 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -13.152 -9.729 -15.714 -7.224 -14.760 -3.994 -9.033 -15.062 -11.101 3.909 -11.288 -0.142 -9.404 -11.351 -11.493 -14.947 ML 128 126 1 131 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 28 C G - - MP 133 132 6 137 6 2 2 24 41 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -12.220 -12.501 -4.908 -8.738 -3.920 -4.551 3.787 -10.803 -11.641 -8.710 -4.715 -10.905 0.952 -12.054 -3.809 -10.443 ML 134 132 6 137 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 27 u a - - MP 139 138 6 143 6 2 2 22 39 -15.174 -15.113 -0.000 -13.889 -14.169 -14.564 -9.431 -2.353 -9.394 -2.813 -8.542 -10.181 1.692 -9.103 -3.665 2.545 -2.474 -3.706 2.636 -6.082 -5.978 -8.048 ML 140 138 6 143 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 26 C G - - MP 145 144 6 149 4 2 2 20 37 -14.391 -14.598 -0.000 -13.012 0.930 -12.502 -6.079 -8.739 0.665 -3.416 3.600 -10.803 -11.641 -8.710 -11.761 -10.906 -3.288 -12.054 -2.598 -10.443 ML 146 144 6 149 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 151 150 6 153 3 1 1 18 34 -15.301 -0.000 -13.955 1.989 -10.945 -5.636 -6.495 D 152 150 6 153 3 0 0 19 38 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - - - ML 154 153 3 156 3 1 1 17 32 -15.301 -0.000 -13.955 1.355 -10.226 0.527 -10.142 D 155 153 3 156 3 0 0 18 37 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - - - ML 157 156 3 159 3 1 1 16 31 -2.827 -0.219 -13.955 -2.171 0.110 -3.954 1.397 D 158 156 3 159 3 0 0 16 34 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 16 31 -2.038 -0.404 -10.287 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - G - - - ML 160 159 3 162 3 1 1 11 29 -15.301 -0.000 -13.955 -6.376 -6.516 1.991 -10.571 D 161 159 3 162 3 0 0 16 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 163 162 3 165 3 1 1 9 28 -15.301 -0.000 -13.955 -6.164 -5.593 1.987 -10.560 D 164 162 3 165 3 0 0 15 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - U - - - ML 166 165 3 168 3 1 1 7 12 -2.032 -0.405 -13.955 -8.127 -0.516 -2.955 1.664 D 167 165 3 168 3 0 0 5 10 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 6 12 -4.876 -0.051 -10.721 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.990 -10.961 -5.981 -6.357 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 0 683 1495 -15.301 -0.000 -13.955 IL 174 174 2 174 3 1 1 685 1497 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 175 174 2 177 5 1 1 683 1495 -14.235 -0.007 -14.050 -7.757 -15.154 -1.135 -8.136 1.122 0.449 D 176 174 2 177 5 0 0 680 1492 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 683 1495 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 31 129 U A - - MP 178 177 3 182 6 2 2 682 1494 -6.869 -15.106 -0.094 -4.202 -14.163 -14.558 -11.002 -10.872 -10.738 -0.768 -2.866 -11.229 1.704 -10.139 -10.700 -3.628 -11.042 -8.606 3.493 -2.993 -0.872 -9.452 ML 179 177 3 182 6 1 1 681 1493 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 680 1492 -9.161 -7.890 -3.799 -7.868 -0.147 -6.082 -2.205 -3.511 1.832 -2.896 D 181 177 3 182 6 0 0 673 1485 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 681 1493 -5.298 -5.561 -0.093 -7.216 -7.992 -7.652 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 681 1493 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 128 c g - - MP 184 183 6 188 6 2 2 680 1492 -6.027 -15.026 -0.023 -13.802 -14.082 -14.477 -9.388 -9.089 -5.884 -1.683 -4.192 -5.617 2.900 -2.368 -9.246 -1.819 -5.431 0.832 2.510 -9.570 -2.815 -7.966 ML 185 183 6 188 6 1 1 680 1492 -0.584 -12.215 -6.929 -1.630 -12.065 -9.594 -6.574 1.986 -7.026 -5.660 MR 186 183 6 188 6 1 1 679 1491 -9.161 -7.890 -0.234 -7.868 -3.002 -6.082 -2.476 1.774 -3.305 -1.746 D 187 183 6 188 6 0 0 671 1483 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 679 1491 -7.695 -7.957 -0.017 -9.613 -10.389 -10.049 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 679 1491 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 127 u a - - MP 190 189 6 194 6 2 2 678 1490 -15.148 -15.088 -0.000 -13.864 -14.144 -14.539 -6.232 -9.706 -9.904 -3.654 -6.211 -10.647 2.364 -9.391 -9.788 1.748 -10.257 -7.305 2.859 -10.121 -3.087 -8.515 ML 191 189 6 194 6 1 1 679 1491 -0.090 -10.630 -5.344 -5.039 -10.480 -8.009 1.968 -5.413 -4.846 -5.101 MR 192 189 6 194 6 1 1 674 1486 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 669 1481 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 678 1490 -6.206 -0.104 -4.387 -8.124 -8.900 -8.561 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 677 1489 -5.388 -0.054 -8.900 -7.067 -8.173 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 125 G C - - MP 196 195 6 200 6 2 2 676 1488 -15.174 -6.438 -0.017 -13.889 -14.169 -14.564 -13.028 -3.694 -15.036 -7.177 -14.680 -10.919 -2.607 -14.623 -6.130 3.894 -11.297 -0.374 -3.307 -11.376 -11.454 -13.993 ML 197 195 6 200 6 1 1 674 1486 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 672 1483 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 668 1480 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 675 1487 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 675 1487 -4.892 -0.077 -8.403 -6.571 -7.677 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 123 A U - - MP 202 201 6 206 4 2 2 674 1486 -14.391 -14.598 -0.000 -13.012 -11.178 -2.323 -11.307 3.399 -11.976 -13.600 1.797 -1.263 -10.927 -4.085 -11.550 -3.964 0.303 -12.388 -9.462 -9.923 ML 203 201 6 206 4 1 1 672 1484 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 4 1 1 669 1480 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 667 1478 -4.568 -4.250 -2.265 -0.520 IL 206 206 5 206 4 1 1 674 1485 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 673 1485 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - C - - - ML 208 207 6 210 3 1 1 672 1484 -15.301 -0.000 -13.955 -5.426 1.632 -9.369 -0.190 D 209 207 6 210 3 0 0 664 1476 -6.174 -1.687 -0.566 IL 210 210 3 210 3 1 1 672 1484 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - U - - - ML 211 210 3 213 3 1 1 671 1483 -15.301 -0.000 -13.955 -5.475 -2.319 -6.551 1.913 D 212 210 3 213 3 0 0 660 1471 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 671 1482 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - u - - - ML 214 213 3 216 3 1 1 670 1482 -15.301 -0.000 -13.955 0.005 -0.005 -0.005 0.006 D 215 213 3 216 3 0 0 653 1465 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 669 1481 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - u - - - ML 217 216 3 219 3 1 1 669 1481 -15.301 -0.000 -13.955 0.005 -0.005 -0.005 0.006 D 218 216 3 219 3 0 0 642 1454 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 667 1479 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - a - - - ML 220 219 3 222 3 1 1 668 1480 -15.301 -0.000 -13.955 0.040 -0.017 -0.018 -0.006 D 221 219 3 222 3 0 0 621 1433 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 665 1477 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - G - - - ML 223 222 3 225 3 1 1 667 1479 -1.483 -0.639 -13.955 0.532 -5.394 1.328 -5.645 D 224 222 3 225 3 0 0 523 1335 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 712 1523 -0.033 -5.479 -16.695 0.000 0.000 0.000 0.000 [ MATL 40 ] 122 - A - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 1.679 -5.686 -5.837 -0.394 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Trp ACC euk-Trp-r2-031616 LENG 72 MAXL 730 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 14:16:06 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Trp-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Trp-r2-031616.sto NSEQ 611 EFFN 16.124336 CKSUM 4114863216 STATS LOCAL MSV -8.2707 0.71883 STATS LOCAL VITERBI -8.9994 0.71883 STATS LOCAL FORWARD -3.8717 0.71883 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53449 1.43789 1.20802 1.39345 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 0.00000 * 1 2.19282 2.85237 0.35278 2.05604 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 2 1.01811 1.29532 1.45957 2.02060 2 a - - ( 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 3 1.34012 0.76618 2.05891 1.92548 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 4 2.56487 1.13550 0.84741 1.75279 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 5 2.33486 1.03553 1.57133 1.07772 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 6 2.47904 1.31426 0.95322 1.33940 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 7 2.11735 3.02406 0.28783 2.51134 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 8 5.02684 4.70626 5.60475 0.01947 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 9 1.36790 3.94738 0.35495 3.69505 9 G - - , 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 10 4.14727 4.79979 0.03004 5.19233 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 11 3.82896 0.23672 3.59980 1.82185 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 12 2.43167 1.46519 1.09227 1.06241 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 13 2.12924 0.22523 3.95106 2.75663 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 14 0.02376 5.23161 4.55575 4.87614 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 15 0.45598 4.54253 1.06951 4.39383 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 16 2.46118 1.35888 3.27435 0.47824 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.14427 2.05566 5.06186 0.34366 1.23503 1.09861 0.40547 17 4.47069 5.28578 0.02248 5.16341 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 18 4.36561 4.93049 0.02665 5.05702 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 19 3.47338 1.82349 3.20620 0.26525 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.25318 1.52632 5.06186 0.08609 2.49513 1.09861 0.40547 20 0.02271 5.25868 4.64169 4.87762 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 21 1.47170 3.84404 0.31674 3.88550 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 22 1.12896 1.15459 1.34943 2.28224 27 a - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 23 1.90917 3.74123 0.22032 3.65703 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 24 5.18072 0.07577 5.04009 2.79898 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 25 1.88776 3.15511 0.68097 1.20454 30 G - - , 1.38629 1.38629 1.38629 1.38629 0.01676 5.06186 4.57722 1.46634 0.26236 1.09861 0.40547 26 2.61134 1.35719 2.68347 0.50940 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.02034 4.28456 5.05791 0.75700 0.63313 1.28747 0.32292 27 2.54339 0.85419 1.86450 1.07646 33 c - - < 1.38629 1.38629 1.38629 1.38629 0.05919 2.97372 5.05791 0.23258 1.57257 0.80282 0.59432 28 2.80751 1.11735 1.59467 0.89276 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.02809 3.84577 5.06186 0.51432 0.91108 1.09861 0.40547 29 3.30990 3.85877 0.08135 3.88644 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 30 0.72900 1.32790 2.43312 1.80295 38 a - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 31 3.41591 0.30725 4.23588 1.52684 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 32 3.55864 2.76756 4.08567 0.11441 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 33 1.31330 1.46632 1.47763 1.30153 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 34 1.31330 1.46632 1.47763 1.30153 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 35 1.29789 1.47267 1.48366 1.30648 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 36 1.03909 3.78971 0.51789 3.58118 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.38793 1.15452 5.06186 3.79050 0.02284 1.09861 0.40547 37 0.26547 3.41045 3.55817 1.76239 122 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 38 1.95698 2.53512 1.30878 0.67469 123 U - - > 1.38629 1.38629 1.38629 1.38629 0.02295 4.11321 5.06186 0.65050 0.73770 1.09861 0.40547 39 4.04941 0.12309 3.77925 2.58300 125 C - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 40 0.95072 1.64706 1.03785 2.70745 127 a - - > 1.38629 1.38629 1.38629 1.38629 0.06159 5.06186 2.93004 1.46634 0.26236 1.09861 0.40547 41 1.14892 2.53473 0.82467 1.79965 128 g - - > 1.38629 1.38629 1.38629 1.38629 0.01338 5.01366 5.01366 1.46634 0.26236 0.21288 1.65156 42 0.58864 2.76593 1.22319 2.43372 129 A - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 43 0.84423 2.49901 1.15720 1.75112 130 a - - , 1.38629 1.38629 1.38629 1.38629 0.05636 4.37928 3.16372 0.81830 0.58193 1.09861 0.40547 44 3.54826 4.78537 0.06699 3.58743 132 G - - , 1.38629 1.38629 1.38629 1.38629 0.12569 2.19334 5.02527 2.39475 0.09562 0.26213 1.46712 45 3.16210 3.81041 0.18660 2.24673 151 G - - , 1.38629 1.38629 1.38629 1.38629 0.03741 5.06186 3.49383 1.46634 0.26236 1.09861 0.40547 46 2.49086 1.99960 2.67736 0.33824 152 U - - , 1.38629 1.38629 1.38629 1.38629 0.01306 5.03752 5.03752 1.46634 0.26236 0.34848 1.22336 47 3.89046 1.56987 4.44068 0.27483 153 U - - , 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 48 1.50737 1.96972 0.56902 2.61822 154 G - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 49 2.76210 0.57761 1.72378 1.62347 155 C - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 50 0.96676 2.53796 0.72079 2.91340 156 g - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 51 2.58388 2.08810 0.58151 1.42070 157 G - - < 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 52 3.94860 4.34927 0.03961 5.01527 158 G - - < 1.38629 1.38629 1.38629 1.38629 0.02120 4.22390 5.06186 0.71599 0.67081 1.09861 0.40547 53 3.89064 3.82836 4.60383 0.05360 160 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 54 4.04807 3.91181 4.30046 0.05237 161 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 55 4.50379 0.03779 4.70870 4.07427 162 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 56 0.50145 4.10422 1.01420 4.18977 163 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 57 0.02501 4.89019 4.88369 4.64536 164 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 58 1.16144 2.80465 2.19577 0.66327 165 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01304 5.06186 5.01794 1.46634 0.26236 1.09861 0.40547 59 3.93967 1.97261 4.46110 0.18645 166 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 5.06158 5.06158 1.46634 0.26236 1.06955 0.42032 60 4.78991 0.04210 4.71012 3.73349 167 C - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 61 1.51742 0.61833 1.95457 2.30004 168 C - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 62 3.14789 0.81316 2.42112 0.85618 169 c - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 63 2.09463 1.89078 0.45849 2.36772 170 G - - > 1.38629 1.38629 1.38629 1.38629 0.02216 4.16134 5.06186 0.67826 0.70826 1.09861 0.40547 64 2.83957 1.54995 1.82088 0.56668 172 U - - > 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 65 2.69602 0.37608 2.65327 1.73979 173 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 66 1.61051 1.09888 1.12738 1.94427 174 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 67 1.63894 1.73843 0.75113 1.84398 175 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 68 2.43568 1.33060 0.91395 1.39754 176 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01905 4.37928 5.06186 0.81830 0.58193 1.09861 0.40547 69 2.25665 2.09348 0.69256 1.30288 178 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 70 2.23270 2.20869 1.23365 0.70991 179 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01275 5.06186 5.06186 1.46634 0.26236 1.09861 0.40547 71 2.16157 0.39697 2.70991 1.92441 180 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03150 3.70205 5.06186 1.17213 0.37064 1.09861 0.40547 72 0.09408 3.89655 2.99826 3.93210 184 A - - : 1.38629 1.38629 1.38629 1.38629 0.00639 5.05551 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Tyr ACC euk-Tyr-r2-031616 STATES 281 NODES 78 CLEN 89 W 441 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 14:57:00 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Tyr-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Tyr-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Tyr-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Tyr-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Tyr-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Tyr-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Tyr-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1095 EFFN 1095.000000 CKSUM 4131210055 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4610 0.71857 ECMLC 0.70527 -7.26429 1.47890 1600000 571715 0.002099 ECMGC 0.32890 -47.92314 -34.67168 1600000 31251 0.012800 ECMLI 0.68910 -7.07820 1.75868 1600000 529435 0.002267 ECMGI 0.34252 -44.54902 -31.86109 1600000 30864 0.012960 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 441 863 -15.025 -16.270 -0.001 -10.641 IL 1 1 2 1 4 20 43 442 864 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 44 443 865 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 183 - A - - MR 3 2 3 5 5 25 51 442 864 -4.396 -0.070 -14.889 -15.101 -15.992 1.899 -4.071 -2.671 -4.215 D 4 2 3 5 5 17 39 435 857 -6.034 -1.389 -3.660 -5.091 -1.016 IR 5 5 3 5 5 25 51 444 866 -0.595 -1.569 -12.590 -10.757 -11.863 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 179 C G - - MP 6 5 3 10 6 24 50 441 863 -16.007 -6.913 -0.012 -14.723 -15.003 -15.398 -5.376 -9.971 -4.769 -2.396 -4.094 -9.063 3.484 -4.768 -10.166 2.013 -5.683 -3.355 -2.556 -10.472 -3.300 -4.854 ML 7 5 3 10 6 20 43 438 859 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 43 437 859 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 16 39 428 850 -10.022 -8.720 -4.517 -5.199 -5.217 -0.154 IL 10 10 5 10 6 20 43 438 860 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 40 430 851 -5.193 -3.281 -8.704 -6.872 -0.220 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 177 C G - - MP 12 11 6 16 6 28 51 439 861 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -6.591 -9.998 -4.689 -2.385 -3.229 -7.360 3.354 -4.865 -10.155 1.763 -5.471 -7.565 0.718 -10.480 -1.654 -8.874 ML 13 11 6 16 6 20 43 436 858 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 20 43 436 857 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 16 39 427 849 -13.275 -11.973 -7.770 -8.452 -8.470 -0.015 IL 16 16 5 16 6 20 44 438 859 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 21 44 438 859 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 176 U A - - MP 18 17 6 22 6 27 49 437 859 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -4.050 -6.059 -10.275 -1.120 -6.389 -11.107 1.324 -9.830 -10.154 2.206 -10.659 -4.988 3.042 -6.947 -5.925 -4.716 ML 19 17 6 22 6 20 43 434 856 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 20 43 434 856 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 16 38 427 849 -13.275 -11.973 -7.770 -8.452 -8.470 -0.015 IL 22 22 5 22 6 20 44 436 858 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 44 436 857 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 175 U A - - MP 24 23 6 28 6 25 47 435 857 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -10.438 -10.147 -10.422 1.191 -2.741 -11.240 -0.022 -9.933 -5.631 -0.466 -10.789 -7.721 3.211 -10.613 1.332 -4.216 ML 25 23 6 28 6 20 43 433 854 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 42 432 854 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 16 38 427 848 -13.275 -11.973 -7.770 -8.452 -8.470 -0.015 IL 28 28 5 28 6 20 44 434 856 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 44 434 855 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 174 C G - - MP 30 29 6 34 6 23 45 433 855 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -10.555 -10.273 -7.192 -0.639 -3.523 -11.322 3.642 -5.960 -10.396 0.965 -10.889 -7.854 -1.779 -10.725 -1.059 -5.125 ML 31 29 6 34 6 19 42 431 853 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 42 431 852 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 16 38 427 848 -13.275 -11.973 -4.878 -8.452 -8.470 -0.059 IL 34 34 5 34 6 20 43 432 854 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 20 43 432 854 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 173 G C - - MP 36 35 6 40 6 21 43 431 853 -15.995 -15.935 -0.000 -14.711 -14.991 -15.386 -9.964 -3.717 -9.783 0.899 -6.627 -4.288 0.734 -10.473 -3.293 3.508 -6.169 -1.416 -4.405 -9.637 -1.267 -8.748 ML 37 35 6 40 6 19 41 429 851 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 18 41 429 851 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 16 38 427 848 -13.232 -11.930 -5.188 -8.409 -8.426 -0.049 IL 40 40 5 40 6 19 42 430 852 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 42 430 852 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 172 A U - - MP 42 41 6 46 4 19 41 429 851 -15.219 -15.426 -0.000 -13.840 -6.087 -10.648 -4.392 3.529 -14.225 -15.071 -9.635 -5.143 -11.763 1.319 -12.417 -1.756 0.644 -13.336 -11.489 -7.211 ML 43 41 6 46 4 18 40 428 850 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 17 39 428 849 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 16 38 427 848 -8.626 -8.307 -1.068 -0.951 IL 46 46 5 46 4 18 40 429 850 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 18 40 429 850 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 17 39 427 849 -6.519 -0.016 -14.788 -9.813 -6.403 -6.714 1.992 D 49 47 6 50 3 16 38 426 848 -9.790 -0.084 -4.181 IL 50 50 3 50 3 17 39 427 849 -4.492 -0.076 -7.192 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 51 50 3 53 2 16 38 426 848 -16.796 -0.000 1.618 -5.532 -0.163 -6.020 D 52 50 3 53 2 15 37 425 847 -8.445 -0.004 IL 53 53 3 53 2 16 38 426 848 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 15 37 425 847 [ BEGR 59 ] - - - - - - S 55 54 1 56 3 0 3 160 336 -16.140 -0.000 -14.794 IL 56 56 2 56 3 1 4 163 339 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 126 - A - - - ML 57 56 2 59 3 1 3 160 336 -16.140 -0.159 -3.262 1.548 -4.567 -2.236 -0.285 D 58 56 2 59 3 0 1 169 345 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 160 336 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 127 - G - - - ML 60 59 3 62 3 1 2 154 331 -3.228 -0.163 -14.636 -3.718 -4.242 1.888 -2.566 D 61 59 3 62 3 0 1 172 349 -0.431 -1.966 -8.693 IL 62 62 3 62 3 1 2 175 351 -0.151 -3.336 -14.346 0.000 0.000 0.000 0.000 [ MATL 62 ] 149 - G - - - ML 63 62 3 65 3 1 1 28 47 -16.140 -0.137 -3.468 -0.359 -9.500 1.533 -1.620 D 64 62 3 65 3 0 0 31 50 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 150 - U - - - ML 66 65 3 68 3 1 1 27 46 -16.004 -0.000 -14.658 -1.419 -5.353 -4.763 1.834 D 67 65 3 68 3 0 0 26 45 -14.097 -0.004 -8.489 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 151 - C - - - ML 69 68 3 71 5 1 1 26 45 -15.074 -0.000 -14.889 -15.101 -15.993 -6.739 1.955 -5.719 -3.398 D 70 68 3 71 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 152 171 G C - - MP 72 71 3 76 6 2 2 25 44 -7.295 -7.247 -0.019 -14.724 -15.003 -15.398 -2.532 -2.338 -9.827 1.741 -10.957 -6.725 -0.673 -10.517 -5.523 3.522 -6.113 -4.409 -6.288 -4.136 -8.030 -8.792 ML 73 71 3 76 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 24 43 -5.658 -5.921 -0.072 -7.576 -8.352 -8.012 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 24 43 -4.912 -0.076 -8.424 -6.591 -7.697 0.000 0.000 0.000 0.000 [ MATP 66 ] 154 169 C G - - MP 78 77 6 82 6 2 2 23 42 -7.407 -15.947 -0.009 -14.724 -15.003 -15.398 -10.359 -10.063 -10.354 -2.314 -4.068 -7.762 3.604 -5.450 -10.214 0.773 -10.724 -0.894 -2.255 -6.895 0.115 -8.934 ML 79 77 6 82 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 23 41 -5.560 -5.822 -0.077 -7.478 -8.254 -7.914 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 156 168 U G - - MP 84 83 6 88 6 2 2 21 40 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -10.330 -10.020 -4.641 0.524 -9.201 -11.167 -0.412 -9.852 -10.189 0.503 -10.700 -3.636 1.481 -5.431 3.227 -3.447 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 68 ] 157 167 G C - - MP 90 89 6 94 6 2 2 19 38 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.230 -5.297 -14.002 -4.319 -14.568 -11.670 -0.646 -14.304 -11.808 3.821 -12.015 -2.036 -0.250 -3.991 -11.489 -12.962 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 69 ] 158 166 G C - - MP 96 95 6 100 4 2 2 17 35 -15.231 -15.438 -0.000 -13.852 -13.991 -4.315 -16.582 -8.060 -15.596 -4.856 -9.867 -15.916 -4.494 3.976 -12.122 -3.504 -10.238 -4.816 -12.328 -15.835 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 159 - U - - - ML 102 101 6 104 3 1 1 14 33 -16.140 -0.000 -14.794 -5.609 -3.659 -9.990 1.963 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 160 - U - - - ML 105 104 3 107 3 1 1 13 31 -16.140 -0.000 -14.794 -12.892 -5.747 -14.128 1.993 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 161 - C - - - ML 108 107 3 110 3 1 1 12 30 -16.140 -0.000 -14.794 -10.188 1.963 -6.063 -3.557 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 162 - G - - - ML 111 110 3 113 3 1 1 10 29 -16.140 -0.000 -14.794 0.692 -10.919 1.246 -6.370 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 163 - A - - - ML 114 113 3 116 3 1 1 9 28 -16.140 -0.000 -14.794 1.990 -11.868 -5.998 -6.593 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 164 - A - - - ML 117 116 3 119 3 1 1 7 26 -16.140 -0.000 -14.794 1.169 -0.352 -3.887 -0.152 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 165 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -12.134 -2.058 -13.116 1.911 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 77 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 1 17 400 822 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 1 17 400 822 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 0 37 63 -0.000 -14.135 -13.543 -14.183 [ MATP 15 ] 11 33 G C - - MP 127 126 1 131 6 2 2 37 63 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.822 -5.179 -15.699 -5.352 -15.511 -11.770 0.682 -15.332 -11.929 3.791 -3.521 -1.289 -10.213 -12.222 -12.290 -14.602 ML 128 126 1 131 6 1 1 36 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 35 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 37 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 36 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 32 C G - - MP 133 132 6 137 6 2 2 35 61 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.060 -13.342 -12.377 -9.579 -6.603 -12.521 3.940 -4.143 -12.481 -9.550 -12.601 -11.746 -1.452 -12.894 -2.240 -11.283 ML 134 132 6 137 6 1 1 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 33 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 31 U A - - MP 139 138 6 143 6 2 2 33 59 -16.008 -5.732 -0.028 -14.724 -15.003 -15.398 -12.806 -12.958 -12.231 -2.623 -0.141 -12.447 1.388 -11.526 -12.301 -2.088 -12.472 -11.094 3.588 -12.700 -4.798 -6.403 ML 140 138 6 143 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 32 58 -6.254 -0.030 -9.766 -7.933 -9.039 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 29 C G - - MP 145 144 6 149 4 2 2 31 57 -15.231 -15.438 -0.000 -13.852 -0.603 -3.739 -12.297 -9.288 -7.944 -3.698 3.496 -4.598 0.510 -9.216 -12.530 0.596 -1.656 -12.787 -2.307 -1.315 ML 146 144 6 149 4 1 1 31 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 30 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 29 55 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 32 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 31 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 151 150 6 153 3 1 1 29 55 -16.140 -0.000 -14.794 1.991 -6.508 -11.141 -6.328 D 152 150 6 153 3 0 0 27 53 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 30 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 154 153 3 156 3 1 1 28 54 -16.140 -0.000 -14.794 -3.811 -6.681 1.967 -6.661 D 155 153 3 156 3 0 0 26 52 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 29 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 157 156 3 159 3 1 1 27 53 -5.093 -0.391 -2.263 -5.040 0.436 -6.709 1.382 D 158 156 3 159 3 0 0 25 51 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 31 57 -1.012 -0.992 -9.473 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - U - - - ML 160 159 3 162 3 1 1 25 49 -15.803 -0.000 -14.457 -6.470 -3.339 -6.595 1.956 D 161 159 3 162 3 0 0 24 48 -15.298 -0.050 -4.888 IL 162 162 3 162 3 1 1 26 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - - - ML 163 162 3 165 3 1 1 24 48 -16.130 -0.000 -14.785 -4.802 -12.397 1.982 -6.279 D 164 162 3 165 3 0 0 18 42 -10.435 -5.948 -0.025 IL 165 165 3 165 3 1 1 25 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - - - ML 166 165 3 168 3 1 1 23 47 -16.130 -0.000 -14.785 -5.435 -12.417 1.988 -6.770 D 167 165 3 168 3 0 0 17 41 -10.435 -5.948 -0.025 IL 168 168 3 168 3 1 1 24 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - - - ML 169 168 3 171 3 1 1 22 46 -1.806 -0.486 -14.785 -2.521 -1.643 -5.890 1.803 D 170 168 3 171 3 0 0 13 37 -10.435 -5.948 -0.025 IL 171 171 3 171 3 1 1 22 46 -1.108 -0.900 -12.621 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.994 -12.042 -6.044 -11.397 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 2 384 806 -16.140 -0.000 -14.794 IL 177 177 2 177 3 1 1 385 807 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - G - - - ML 178 177 2 180 5 1 2 384 806 -7.270 -0.015 -8.056 -15.101 -15.993 -0.880 -6.750 1.757 -3.913 D 179 177 2 180 5 0 0 381 803 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 2 384 806 -4.886 -0.077 -6.565 -8.397 -7.671 0.000 0.000 0.000 0.000 [ MATP 30 ] 36 125 G U - - MP 181 180 3 185 6 2 3 383 805 -16.002 -15.942 -0.000 -14.718 -14.998 -15.393 -11.055 -3.723 -11.085 1.550 -10.246 -12.182 0.266 -4.640 -10.878 -1.984 -6.769 3.332 0.324 -11.460 -2.612 -9.675 ML 182 180 3 185 6 1 1 382 803 -9.034 -9.380 -0.131 -3.789 -9.230 -6.759 -2.860 -4.235 1.898 -3.596 MR 183 180 3 185 6 1 1 380 801 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 375 796 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 382 803 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 382 803 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 37 124 a u - - MP 187 186 6 191 6 2 3 381 803 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -7.921 -10.013 -6.149 2.910 -9.178 -11.156 1.882 -7.116 -10.170 -1.979 -10.683 -2.069 2.040 -10.495 -2.627 -8.889 ML 188 186 6 191 6 1 1 378 800 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 378 799 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 373 795 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 380 802 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 380 801 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 38 123 G C - - MP 193 192 6 197 6 2 3 379 801 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -9.982 -4.592 -9.801 1.710 -10.931 -10.395 -0.842 -10.491 -7.239 3.512 -5.669 -3.713 -0.757 -5.735 -8.005 -8.766 ML 194 192 6 197 6 1 1 377 798 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 376 798 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 372 794 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 378 800 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 378 799 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 122 G C - - MP 199 198 6 203 6 2 3 377 799 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.866 -6.395 -15.859 -2.613 -15.410 -4.971 -2.532 -15.581 -4.872 3.811 -12.106 0.586 -10.125 -4.379 -12.183 -14.975 ML 200 198 6 203 6 1 1 375 797 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 374 796 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 371 793 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 376 798 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 376 797 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 121 A U - - MP 205 204 6 209 4 2 3 375 797 -15.231 -15.438 -0.000 -13.852 -4.748 -3.356 -12.245 3.915 -14.373 -15.533 -2.524 -12.287 -11.806 -1.404 -12.475 -4.610 -2.392 -13.550 -11.665 -10.844 ML 206 204 6 209 4 1 1 374 795 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 372 793 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 370 792 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 375 796 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 374 796 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - C - - - ML 211 210 6 213 3 1 2 373 795 -16.140 -0.000 -14.794 -11.565 1.965 -12.024 -3.412 D 212 210 6 213 3 0 0 369 790 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 373 795 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - U - - - ML 214 213 3 216 3 1 2 372 794 -16.140 -0.000 -14.794 -6.095 -3.255 -3.940 1.932 D 215 213 3 216 3 0 0 367 789 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 372 794 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - u - - - ML 217 216 3 219 3 1 2 371 793 -16.140 -0.000 -14.794 0.003 -0.003 -0.003 0.003 D 218 216 3 219 3 0 0 365 786 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 371 793 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - u - - - ML 220 219 3 222 3 1 2 370 792 -16.140 -0.000 -14.794 0.003 -0.003 -0.003 0.003 D 221 219 3 222 3 0 0 361 783 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 370 791 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - u - - - ML 223 222 3 225 3 1 2 369 791 -16.140 -0.000 -14.794 0.003 -0.003 -0.003 0.003 D 224 222 3 225 3 0 0 357 778 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 368 790 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - G - - - ML 226 225 3 228 3 1 1 368 790 -16.140 -0.442 -1.922 0.706 -10.830 1.231 -5.597 D 227 225 3 228 3 0 0 348 770 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 373 795 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - u - - - ML 229 228 3 231 3 1 2 374 796 -15.698 -0.000 -14.352 0.098 -0.302 -1.061 0.713 D 230 228 3 231 3 0 0 239 661 -15.639 -11.152 -0.001 IL 231 231 3 231 3 1 1 372 794 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 48 - g - - - ML 232 231 3 234 3 1 1 373 795 -15.698 -0.001 -11.035 -1.093 -1.424 0.781 0.526 D 233 231 3 234 3 0 0 235 657 -15.639 -11.152 -0.001 IL 234 234 3 234 3 1 1 371 793 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 49 - g - - - ML 235 234 3 237 3 1 1 372 794 -15.698 -0.005 -8.279 0.062 -1.966 0.897 -0.255 D 236 234 3 237 3 0 0 230 652 -15.641 -11.154 -0.001 IL 237 237 3 237 3 1 1 371 792 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 50 - g - - - ML 238 237 3 240 3 1 1 371 793 -15.693 -0.002 -9.671 0.112 -1.103 0.709 -0.288 D 239 237 3 240 3 0 0 225 646 -15.654 -11.167 -0.001 IL 240 240 3 240 3 1 1 370 791 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 51 - a - - - ML 241 240 3 243 3 1 1 370 792 -15.691 -0.105 -3.833 0.563 -1.528 -0.386 0.496 D 242 240 3 243 3 0 0 218 640 -15.658 -11.171 -0.001 IL 243 243 3 243 3 1 1 370 792 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 52 - u - - - ML 244 243 3 246 3 1 1 371 792 -15.586 -0.157 -3.276 0.571 -1.410 -0.769 0.634 D 245 243 3 246 3 0 0 208 629 -15.911 -11.424 -0.001 IL 246 246 3 246 3 1 1 372 793 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 53 - u - - - ML 247 246 3 249 3 1 1 372 794 -15.429 -0.279 -2.506 -0.136 -0.864 -0.552 0.894 D 248 246 3 249 3 0 0 192 613 -16.199 -11.712 -0.000 IL 249 249 3 249 3 1 1 375 797 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 54 - a - - - ML 250 249 3 252 3 1 2 376 797 -0.232 -2.750 -13.804 0.319 -0.188 -0.579 0.270 D 251 249 3 252 3 0 0 116 537 -16.550 -2.838 -0.217 IL 252 252 3 252 3 1 2 378 800 -0.063 -4.548 -16.862 0.000 0.000 0.000 0.000 [ MATL 49 ] 112 - c - - - ML 253 252 3 255 3 1 2 17 35 -15.336 -0.000 -13.990 -0.029 0.295 -0.625 0.195 D 254 252 3 255 3 0 0 15 33 -16.333 -2.458 -0.290 IL 255 255 3 255 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 113 - a - - - ML 256 255 3 258 3 1 2 16 34 -15.520 -0.000 -14.174 0.585 -0.239 -0.339 -0.214 D 257 255 3 258 3 0 0 14 32 -16.044 -2.239 -0.343 IL 258 258 3 258 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 114 - g - - - ML 259 258 3 261 3 1 2 14 33 -15.675 -0.000 -14.329 0.594 -1.168 0.622 -0.981 D 260 258 3 261 3 0 0 12 31 -15.701 -4.926 -0.048 IL 261 261 3 261 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 115 - u - - - ML 262 261 3 264 3 1 2 13 32 -15.693 -0.000 -14.347 -0.332 0.047 -2.245 0.972 D 263 261 3 264 3 0 0 11 30 -15.654 -11.167 -0.001 IL 264 264 3 264 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 116 - a - - - ML 265 264 3 267 3 1 2 12 30 -15.693 -0.000 -14.347 0.998 -2.918 0.110 -0.337 D 266 264 3 267 3 0 0 10 29 -15.654 -6.767 -0.013 IL 267 267 3 267 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 117 - G - - - ML 268 267 3 270 3 1 2 11 29 -15.698 -0.000 -14.352 -2.029 -3.061 1.793 -2.553 D 269 267 3 270 3 0 0 9 28 -15.641 -9.260 -0.002 IL 270 270 3 270 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 118 - a - - - ML 271 270 3 273 3 1 2 9 28 -15.698 -0.000 -14.352 0.975 -0.739 -1.129 -0.033 D 272 270 3 273 3 0 0 8 26 -15.639 -11.152 -0.001 IL 273 273 3 273 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 119 - a - - - ML 274 273 3 276 3 1 1 8 26 -15.698 -0.000 -14.352 0.871 0.032 -1.595 -0.291 D 275 273 3 276 3 0 0 7 25 -15.639 -0.001 -10.031 IL 276 276 3 276 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 120 - A - - - ML 277 276 3 279 2 1 1 1 1 * 0.000 1.965 -3.886 -5.132 -10.708 D 278 276 3 279 2 0 0 0 0 * 0.000 IL 279 279 3 279 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 280 279 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Tyr ACC euk-Tyr-r2-031616 LENG 89 MAXL 435 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 14:57:01 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Tyr-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Tyr-r2-031616.sto NSEQ 1095 EFFN 7.815342 CKSUM 4131210055 STATS LOCAL MSV -8.5920 0.71857 STATS LOCAL VITERBI -9.7197 0.71857 STATS LOCAL FORWARD -3.2839 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44335 1.48067 1.26544 1.36938 1.38629 1.38629 1.38629 1.38629 0.02009 4.61049 4.61049 1.46634 0.26236 0.00000 * 1 2.34769 0.72462 1.43826 1.70068 1 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02676 4.61049 4.10672 1.46634 0.26236 1.09861 0.40547 2 2.35874 0.76591 1.57238 1.45672 2 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 1.29608 0.31966 3 2.21065 1.42760 1.34379 0.94255 3 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 1.29608 0.31966 4 1.85222 1.54516 1.97633 0.71079 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 1.29608 0.31966 5 2.34661 0.59176 1.83392 1.65461 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 1.29608 0.31966 6 1.74135 2.17150 0.48276 2.36836 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02022 4.60417 4.60417 1.46634 0.26236 1.29608 0.31966 7 0.76397 2.53396 1.14353 1.99399 7 a - - ( 1.38629 1.38629 1.38629 1.38629 0.02022 4.60433 4.60433 1.46634 0.26236 1.01570 0.44965 8 3.50775 3.32558 3.94050 0.08922 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.02888 3.99053 4.60756 0.86545 0.54622 0.91720 0.51022 9 0.34683 3.31554 1.55253 3.10005 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 10 2.42417 2.41055 0.25920 2.99545 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 11 4.23502 0.11337 4.09326 2.57683 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 12 2.79373 1.28114 2.54174 0.54067 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 13 1.80705 0.92856 1.55003 1.47622 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 14 0.04376 4.37346 4.17642 4.20907 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 15 3.34619 4.46340 0.06569 4.08415 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 16 2.62926 1.21735 3.23558 0.52338 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.23039 3.41553 1.75496 0.90774 0.51657 1.09861 0.40547 17 3.03282 2.74795 3.52298 0.15286 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02405 4.43297 4.43297 1.46634 0.26236 0.14009 2.03473 18 3.67575 4.85376 0.04822 4.27249 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02020 4.60554 4.60554 1.46634 0.26236 1.26260 0.33256 19 3.80343 4.94296 0.04296 4.37193 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02020 4.60554 4.60554 1.46634 0.26236 1.26260 0.33256 20 2.55513 2.29611 3.34533 0.24026 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27893 1.45497 4.60554 0.65792 0.72966 1.26260 0.33256 21 0.03892 4.61706 4.09733 4.45008 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02020 4.60554 4.60554 1.46634 0.26236 0.83433 0.56946 22 1.53315 2.01264 0.83059 1.53844 29 g - - > 1.38629 1.38629 1.38629 1.38629 0.03529 3.69964 4.61087 0.67200 0.71475 1.09861 0.40547 23 0.53484 2.69576 1.30795 2.57210 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 24 2.89590 4.22400 0.09488 3.88101 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 25 3.23477 0.31290 2.28835 2.05672 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 26 1.92923 3.45245 0.25862 2.97677 34 G - - , 1.38629 1.38629 1.38629 1.38629 0.02525 4.20005 4.61087 1.03140 0.44085 1.09861 0.40547 27 1.64186 1.83122 0.73296 1.79770 36 g - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 28 1.22333 1.28582 1.98462 1.23137 37 a - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 29 1.56965 2.54168 0.47315 2.40670 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 30 2.39337 3.04369 0.20905 3.00240 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 31 0.09660 4.13698 2.86719 3.95011 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 32 4.16651 0.07054 4.62319 3.15154 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 33 3.07106 2.78291 3.33579 0.15527 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 34 1.28575 1.50024 1.51752 1.26860 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 35 1.28575 1.50024 1.51752 1.26860 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 36 1.28575 1.50024 1.51752 1.26860 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 37 0.93961 3.40899 0.64017 3.01713 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.25671 4.61087 1.53032 1.46634 0.26236 1.09861 0.40547 38 1.26240 1.58854 1.87337 1.02389 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02538 4.37953 4.37953 1.46634 0.26236 3.16844 0.04298 39 1.54419 1.93326 1.14587 1.12734 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02570 4.37953 4.35500 1.46634 0.26236 3.16844 0.04298 40 1.28381 2.07080 1.04546 1.40486 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02775 4.37922 4.21058 1.46634 0.26236 3.16948 0.04293 41 1.25455 1.87418 1.17460 1.37684 50 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02633 4.37692 4.31108 1.46634 0.26236 3.17717 0.04260 42 1.09528 1.91026 1.65913 1.11717 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07903 4.37606 2.75812 1.46634 0.26236 3.18001 0.04247 43 1.09870 1.87276 1.77619 1.06794 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.10514 4.32389 2.44704 1.46634 0.26236 3.33540 0.03625 44 1.32149 1.74086 1.73219 0.96496 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.16201 4.24776 2.00046 1.46634 0.26236 3.51520 0.03019 45 1.18785 1.56911 1.72237 1.17684 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.86998 0.57132 4.11882 3.14004 0.04425 1.87390 0.16667 46 1.28935 1.39727 1.75287 1.19071 112 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03033 4.20391 4.20391 1.46634 0.26236 1.63831 0.21605 47 1.09079 1.60061 1.64678 1.31079 113 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02776 4.29133 4.29133 1.46634 0.26236 1.49759 0.25318 48 1.08562 1.90950 1.20503 1.53958 114 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02568 4.36802 4.36802 1.46634 0.26236 2.67261 0.07157 49 1.43289 1.43401 2.17067 0.89421 115 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37692 4.37692 1.46634 0.26236 3.17717 0.04260 50 0.89883 2.15991 1.45449 1.41018 116 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37692 4.37692 1.46634 0.26236 3.00854 0.05062 51 2.09237 2.78385 0.31851 2.43525 117 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02539 4.37922 4.37922 1.46634 0.26236 3.14495 0.04402 52 0.92309 1.74846 1.87900 1.28762 118 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02538 4.37953 4.37953 1.46634 0.26236 3.16844 0.04298 53 0.96899 1.49382 1.99408 1.34752 119 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02538 4.37953 4.37953 1.46634 0.26236 0.08789 2.47529 54 0.08252 3.59369 3.56093 3.75955 120 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 55 4.05874 3.10281 3.99372 0.08406 121 U - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 56 3.26308 0.29226 2.89655 1.83293 122 C - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 57 2.63188 0.53079 2.37827 1.39753 123 C - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 58 1.37996 2.19468 1.16106 1.12743 124 u - - > 1.38629 1.38629 1.38629 1.38629 0.02307 4.61086 4.35375 1.46634 0.26236 1.09861 0.40547 59 1.99985 1.70074 1.67427 0.70390 125 u - - > 1.38629 1.38629 1.38629 1.38629 0.02015 4.60795 4.60795 1.46634 0.26236 0.93475 0.49871 60 0.48309 2.57665 2.33800 1.55791 126 A - - , 1.38629 1.38629 1.38629 1.38629 0.04160 4.61087 3.48026 1.46634 0.26236 1.09861 0.40547 61 2.63586 3.29807 0.18838 2.76325 127 G - - , 1.38629 1.38629 1.38629 1.38629 0.17278 1.90702 4.58979 2.24736 0.11169 0.49815 0.93561 62 1.60113 3.06164 0.44268 2.21452 149 G - - , 1.38629 1.38629 1.38629 1.38629 0.09497 4.61087 2.51752 1.46634 0.26236 1.09861 0.40547 63 2.24176 2.80648 3.20673 0.23216 150 U - - , 1.38629 1.38629 1.38629 1.38629 0.02163 4.53752 4.53752 1.46634 0.26236 0.22038 1.62058 64 3.75509 0.09265 4.10575 3.02392 151 C - - , 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 65 1.51517 2.51142 0.47590 2.55423 152 G - - < 1.38629 1.38629 1.38629 1.38629 0.02520 4.20379 4.61087 1.03467 0.43904 1.09861 0.40547 66 2.41970 0.64410 1.75622 1.54544 154 C - - < 1.38629 1.38629 1.38629 1.38629 0.02481 4.22910 4.61086 1.05716 0.42686 1.09861 0.40547 67 1.97661 1.61776 1.79316 0.69980 156 u - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 68 2.18734 2.59997 0.32319 2.41161 157 G - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 69 3.22553 4.06121 0.07871 3.97773 158 G - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 70 3.27763 2.97436 3.86504 0.11626 159 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 71 3.87685 3.54837 4.41113 0.06361 160 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 72 3.90314 0.08290 4.20757 3.11231 161 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 73 0.94454 3.45139 0.62769 3.08755 162 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 74 0.04327 4.51160 4.03880 4.28687 163 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 75 0.77017 1.63413 2.42058 1.37407 164 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 76 3.38254 2.55485 3.89690 0.14153 165 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 77 4.11595 0.09365 3.97387 2.91347 166 C - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 78 2.61947 0.37311 2.45123 1.88139 167 C - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 79 1.52573 1.93147 0.75111 1.79723 168 g - - > 1.38629 1.38629 1.38629 1.38629 0.02009 4.61086 4.61086 1.46634 0.26236 1.09861 0.40547 80 1.90353 1.96552 0.53805 2.06363 169 G - - > 1.38629 1.38629 1.38629 1.38629 0.02537 4.19251 4.61087 1.02481 0.44451 1.09861 0.40547 81 2.75417 0.52770 2.34845 1.38285 171 C - - > 1.38629 1.38629 1.38629 1.38629 0.02675 4.61086 4.10709 1.46634 0.26236 1.09861 0.40547 82 2.14162 1.27523 2.34337 0.67892 172 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02022 4.60417 4.60417 1.46634 0.26236 1.29608 0.31966 83 2.70270 0.55569 1.97998 1.50856 173 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 1.29608 0.31966 84 1.93463 1.94438 0.51931 2.14121 174 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 1.29608 0.31966 85 0.93645 2.13158 1.17803 1.70678 175 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 1.29608 0.31966 86 1.03554 1.42772 1.30626 2.00784 176 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02023 4.60395 4.60395 1.46634 0.26236 0.79231 0.60294 87 1.65382 1.66983 0.68663 2.14446 177 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02009 4.61049 4.61049 1.46634 0.26236 1.09861 0.40547 88 1.92504 1.53791 0.65917 2.10358 179 G - - ) 1.38629 1.38629 1.38629 1.38629 0.05876 3.05511 4.61049 1.15828 0.37691 1.09861 0.40547 89 0.16239 3.17718 2.79007 3.06242 183 A - - : 1.38629 1.38629 1.38629 1.38629 0.01010 4.60049 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME euk-Val ACC euk-Val-r2-031616 STATES 233 NODES 62 CLEN 73 W 529 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 17 15:20:45 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Val-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Val-r2-031616.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Val-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Val-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Val-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/euk-Val-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Val-r2-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1577 EFFN 1577.000000 CKSUM 1979456034 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.6992 0.71877 ECMLC 0.65863 -7.57720 1.62898 1600000 515832 0.002326 ECMGC 0.31266 -44.84551 -31.79962 1600000 23634 0.016925 ECMLI 0.65309 -6.95841 2.15291 1600000 460759 0.002604 ECMGI 0.32314 -41.86717 -29.25105 1600000 23582 0.016962 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 529 1090 -15.550 -16.796 -0.000 -13.249 IL 1 1 2 1 4 25 48 531 1092 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 26 50 531 1092 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 176 - A - - MR 3 2 3 5 5 31 53 530 1091 -5.620 -0.030 -15.414 -15.627 -16.518 1.876 -5.799 -4.223 -1.950 D 4 2 3 5 5 23 44 527 1088 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 30 54 532 1093 -0.601 -1.559 -11.900 -10.068 -11.174 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 172 G C - - MP 6 5 3 10 6 30 52 529 1090 -6.480 -16.470 -0.022 -15.247 -8.026 -15.922 -10.499 -4.244 -3.579 -0.839 -11.448 -10.912 -1.661 -7.094 -5.677 3.852 -5.729 -1.320 -4.928 -4.246 -8.522 -6.614 ML 7 5 3 10 6 24 46 526 1087 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 24 46 526 1087 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 21 42 521 1082 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 27 48 526 1087 -6.891 -7.154 -5.072 -8.809 -0.073 -9.246 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 25 48 528 1089 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 171 u a - - MP 12 11 6 16 6 28 50 527 1088 -16.509 -7.090 -0.017 -15.225 -15.505 -7.893 -6.267 -6.608 -8.459 -0.842 -3.853 -3.123 1.460 -8.737 -3.717 1.666 -6.214 1.855 2.436 -4.225 -3.371 -4.711 ML 13 11 6 16 6 24 45 524 1086 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 27 47 525 1086 -11.931 -10.660 -6.569 -10.638 -0.021 -8.852 1.558 -3.855 -4.136 -0.104 D 15 11 6 16 6 21 41 520 1081 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 25 47 526 1087 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 27 49 526 1087 -5.476 -0.051 -8.987 -7.155 -8.261 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 169 U A - - MP 18 17 6 22 6 29 49 525 1086 -16.503 -16.442 -0.022 -15.219 -6.044 -15.894 -5.904 -4.913 -10.801 -1.592 -2.039 -11.645 1.575 -6.821 -10.659 -1.862 -11.173 -5.288 3.554 -5.288 -1.795 -5.215 ML 19 17 6 22 6 24 45 523 1084 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 26 46 524 1085 -11.931 -10.660 -1.891 -10.638 -0.460 -8.852 1.987 -6.775 -6.129 -6.312 D 21 17 6 22 6 21 41 519 1080 -12.750 -11.448 -7.245 -7.927 -7.945 -0.022 IL 22 22 5 22 6 25 46 524 1085 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 25 46 524 1085 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 168 U A - - MP 24 23 6 28 6 27 47 523 1084 -16.487 -16.426 -0.002 -9.323 -15.483 -15.878 -4.700 -7.416 -7.757 0.569 -4.585 -11.624 1.891 -10.301 -10.638 -1.301 -11.152 -8.051 3.109 -5.349 0.658 -3.770 ML 25 23 6 28 6 23 44 521 1082 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 25 45 522 1084 -0.842 -11.424 -6.351 -11.402 -1.225 -9.616 1.748 -5.942 -0.721 -5.843 D 27 23 6 28 6 21 41 519 1080 -12.750 -11.448 -7.245 -7.927 -7.945 -0.022 IL 28 28 5 28 6 27 46 523 1084 -1.238 -8.315 -0.809 -9.970 -10.747 -10.407 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 25 45 522 1083 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 8 167 C G - - MP 30 29 6 34 6 25 45 521 1082 -16.507 -7.169 -0.010 -15.223 -15.502 -15.898 -10.804 -5.937 -10.805 -3.749 -0.621 -11.649 3.227 -5.018 -7.188 1.314 -5.309 -0.930 1.247 -10.987 -1.218 -5.721 ML 31 29 6 34 6 22 42 519 1080 -8.387 -8.733 -3.448 -0.175 -8.583 -6.113 -2.121 1.712 -2.953 -1.459 MR 32 29 6 34 6 23 43 520 1081 -11.498 -10.227 -6.136 -10.205 -0.028 -8.419 0.477 -4.372 1.321 -4.005 D 33 29 6 34 6 21 41 519 1080 -12.750 -11.448 -0.105 -7.927 -7.945 -4.020 IL 34 34 5 34 6 22 43 520 1081 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 24 44 520 1081 -5.405 -0.054 -8.916 -7.083 -8.189 0.000 0.000 0.000 0.000 [ MATP 7 ] 9 165 c g - - MP 36 35 6 40 6 23 43 519 1080 -16.513 -16.452 -0.000 -15.229 -15.509 -15.904 -10.795 -10.500 -7.645 0.539 -2.695 -11.641 2.996 -7.519 -10.657 1.292 -7.460 0.235 0.638 -10.979 0.215 -4.278 ML 37 35 6 40 6 22 41 518 1079 -8.387 -8.733 -0.210 -3.142 -8.583 -6.113 -2.121 1.712 -2.953 -1.459 MR 38 35 6 40 6 23 42 519 1080 -0.064 -10.227 -6.136 -10.205 -5.339 -8.419 1.341 -3.161 -3.377 0.331 D 39 35 6 40 6 18 38 515 1076 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 22 42 518 1079 -6.866 -7.129 -0.031 -8.784 -9.560 -9.221 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 22 41 518 1079 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 11 164 G C - - MP 42 41 6 46 4 21 41 517 1078 -6.138 -15.963 -0.022 -9.765 -10.498 -2.659 -6.127 1.610 -7.866 -6.600 -0.464 -11.006 -4.886 3.355 -5.998 -0.738 0.145 -5.362 -5.371 -9.282 ML 43 41 6 46 4 20 39 516 1077 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 19 38 515 1076 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 18 37 514 1075 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 21 40 517 1078 -1.010 -8.193 -1.002 -10.679 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 20 40 516 1078 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - U - - - ML 48 47 6 50 3 19 39 515 1076 -7.149 -0.010 -15.318 -9.956 -4.567 -6.343 1.980 D 49 47 6 50 3 18 37 513 1075 -8.565 -0.774 -1.277 IL 50 50 3 50 3 19 39 515 1076 -4.404 -0.081 -7.104 0.000 0.000 0.000 0.000 [ MATL 10 ] 16 - A - - - ML 51 50 3 53 2 18 38 514 1075 -6.883 -0.012 1.035 -7.011 0.940 -5.390 D 52 50 3 53 2 17 37 513 1074 -8.569 -0.004 IL 53 53 3 53 2 18 38 514 1075 -5.755 -0.027 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 17 37 513 1074 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 0 2 166 358 -16.666 -0.000 -15.320 IL 56 56 2 56 3 1 3 171 363 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 119 - A - - - ML 57 56 2 59 3 1 2 166 358 -6.725 -0.137 -3.626 1.854 -5.089 -4.288 -1.711 D 58 56 2 59 3 0 0 183 375 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 157 348 -4.782 -0.062 -7.482 0.000 0.000 0.000 0.000 [ MATL 45 ] 121 - G - - - ML 60 59 3 62 3 1 2 154 346 -4.882 -0.050 -15.198 -3.476 -3.650 1.901 -3.404 D 61 59 3 62 3 0 0 187 379 -0.176 -3.146 -8.854 IL 62 62 3 62 3 1 3 188 380 -0.138 -3.451 -14.239 0.000 0.000 0.000 0.000 [ MATL 46 ] 141 - G - - - ML 63 62 3 65 3 1 1 28 46 -7.126 -0.012 -9.808 -2.566 -3.779 1.791 -1.751 D 64 62 3 65 3 0 0 28 47 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 28 46 -4.426 -0.080 -7.126 0.000 0.000 0.000 0.000 [ MATL 47 ] 143 - U - - - ML 66 65 3 68 3 1 2 27 45 -16.664 -0.000 -15.318 -3.889 -2.093 -6.219 1.882 D 67 65 3 68 3 0 0 29 47 -8.553 -0.205 -2.944 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 144 - C - - - ML 69 68 3 71 5 1 1 25 44 -15.599 -0.001 -11.535 -15.627 -16.518 -6.209 1.806 -4.252 -1.196 D 70 68 3 71 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 145 163 C G - - MP 72 71 3 76 6 2 2 24 43 -16.531 -16.470 -0.000 -15.246 -15.526 -15.921 -10.829 -10.526 -7.151 0.633 -3.747 -3.960 3.390 -6.394 -10.688 1.593 -11.201 -6.043 -1.141 -8.247 -1.645 -9.407 ML 73 71 3 76 6 1 1 25 43 -7.028 -7.374 -0.617 -1.783 -7.224 -4.754 -0.346 -0.595 -0.984 1.033 MR 74 71 3 76 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 146 162 C G - - MP 78 77 6 82 6 2 2 22 41 -16.531 -16.470 -0.000 -11.845 -15.527 -15.922 -6.198 -10.495 -5.312 -4.045 -5.055 -7.350 3.222 -5.311 -10.649 1.649 -6.132 -1.863 1.230 -3.090 -0.725 -6.111 ML 79 77 6 82 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 147 161 C G - - MP 84 83 6 88 6 2 2 20 39 -16.531 -16.470 -0.000 -15.247 -15.526 -15.921 -6.658 -5.662 -10.376 -0.233 -2.598 -4.551 3.028 -8.070 -10.379 2.358 -5.461 -1.508 -1.059 -6.519 -0.410 -7.047 ML 85 83 6 88 6 1 1 24 42 -6.893 -7.239 -1.193 -1.001 -7.089 -4.618 -0.212 0.679 -0.928 0.013 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 148 160 G C - - MP 90 89 6 94 6 2 2 18 37 -16.531 -16.470 -0.000 -15.247 -15.526 -15.921 -5.784 -2.490 -13.699 1.674 -14.514 -4.358 -9.308 -14.166 -5.935 3.613 -4.655 -2.209 -9.610 -4.150 -11.484 -12.659 ML 91 89 6 94 6 1 1 24 42 -6.608 -6.954 -0.904 -1.363 -6.804 -4.334 0.116 -0.761 0.559 -0.230 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 149 159 G C - - MP 96 95 6 100 4 2 2 16 35 -15.756 -15.963 -0.000 -12.735 -14.510 -4.724 -17.077 -4.049 -16.116 -4.933 -10.389 -16.425 -5.312 3.963 -4.775 -4.041 -3.736 -3.817 -12.849 -16.318 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 150 - U - - - ML 102 101 6 104 3 1 1 13 32 -16.666 -0.000 -15.320 -4.285 -3.746 -5.742 1.947 D 103 101 6 104 3 0 0 18 37 -6.643 -0.995 -1.034 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 151 - U - - - ML 105 104 3 107 3 1 1 12 31 -16.666 -0.000 -15.320 -10.402 -6.433 -6.425 1.991 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 152 - C - - - ML 108 107 3 110 3 1 1 11 29 -16.666 -0.000 -15.320 -6.411 1.944 -5.235 -3.133 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 153 - G - - - ML 111 110 3 113 3 1 1 9 27 -16.666 -0.000 -15.320 -0.999 -3.973 1.768 -5.037 D 112 110 3 113 3 0 0 15 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 154 - A - - - ML 114 113 3 116 3 1 1 7 14 -7.182 -0.010 -15.320 1.983 -6.372 -5.848 -5.942 D 115 113 3 116 3 0 0 7 13 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 8 14 -4.376 -0.082 -7.077 0.000 0.000 0.000 0.000 [ MATL 59 ] 156 - u - - - ML 117 116 3 119 3 1 1 6 12 -7.028 -0.013 -9.412 0.497 -6.335 0.142 0.559 D 118 116 3 119 3 0 0 5 11 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 7 13 -4.512 -0.075 -7.212 0.000 0.000 0.000 0.000 [ MATL 60 ] 158 - C - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 0.117 1.152 -6.063 -0.560 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 2 19 489 1051 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 176 2 19 489 1051 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 2 40 72 -0.000 -14.660 -14.067 -14.707 [ MATP 15 ] 18 45 G C - - MP 127 126 1 131 6 2 5 40 72 -16.531 -16.470 -0.000 -15.247 -15.527 -15.922 -13.127 -4.861 -13.499 -3.916 -14.874 -5.929 -9.810 -5.912 -5.016 3.823 -4.899 0.636 -10.018 -3.628 -11.926 -6.457 ML 128 126 1 131 6 1 1 39 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 38 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 1 131 6 0 0 35 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 40 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 39 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 19 44 U A - - MP 133 132 6 137 6 2 4 38 70 -16.531 -7.055 -0.011 -15.247 -15.527 -15.922 -12.267 -12.118 -12.029 -3.441 -2.847 -12.548 1.058 -11.440 -5.482 -3.398 -12.339 -9.831 3.697 -5.122 -0.992 -3.888 ML 134 132 6 137 6 1 1 37 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 36 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 34 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 38 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 37 69 -5.526 -0.049 -9.037 -7.205 -8.311 0.000 0.000 0.000 0.000 [ MATP 17 ] 20 42 G C - - MP 139 138 6 143 6 2 4 36 68 -16.531 -16.470 -0.000 -15.247 -15.527 -15.922 -10.550 -2.497 -7.558 -5.220 -11.169 -10.990 1.325 -10.949 -7.942 3.623 -5.785 -3.190 -0.967 -5.196 -1.787 -9.316 ML 140 138 6 143 6 1 1 35 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 35 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 33 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 36 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 36 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 21 41 U U - - MP 145 144 6 149 4 2 3 34 66 -15.756 -15.963 -0.000 -14.378 0.238 -13.867 -12.903 -5.546 -4.143 -4.380 -0.560 -1.941 -13.006 -10.075 -13.126 -4.510 -3.791 -3.786 -1.262 3.717 ML 146 144 6 149 4 1 1 34 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 33 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 148 144 6 149 4 0 0 32 63 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 35 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 34 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - A - - - ML 151 150 6 153 3 1 2 32 64 -16.666 -0.000 -15.320 1.979 -6.540 -4.801 -6.402 D 152 150 6 153 3 0 0 30 62 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 33 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - G - - - ML 154 153 3 156 3 1 2 31 63 -16.666 -0.000 -15.320 -3.373 -6.143 1.951 -5.529 D 155 153 3 156 3 0 0 29 61 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 32 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 24 - U - - - ML 157 156 3 159 3 1 2 30 62 -1.820 -0.481 -15.320 -5.259 -1.643 -5.448 1.860 D 158 156 3 159 3 0 0 28 59 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 30 62 -1.923 -0.483 -5.580 0.000 0.000 0.000 0.000 [ MATL 22 ] 31 - G - - - ML 160 159 3 162 3 1 2 29 60 -16.654 -0.000 -15.308 -5.375 -12.955 1.991 -11.928 D 161 159 3 162 3 0 0 27 58 -11.166 -6.679 -0.015 IL 162 162 3 162 3 1 1 30 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 32 - G - - - ML 163 162 3 165 3 1 1 28 59 -16.654 -0.000 -15.308 -4.630 -5.852 1.974 -6.283 D 164 162 3 165 3 0 0 27 58 -11.166 -0.032 -5.558 IL 165 165 3 165 3 1 1 29 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 33 - U - - - ML 166 165 3 168 3 1 1 27 58 -3.723 -0.128 -6.763 -4.025 -1.113 -4.886 1.783 D 167 165 3 168 3 0 0 23 54 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 30 62 -0.842 -1.179 -11.525 0.000 0.000 0.000 0.000 [ MATL 25 ] 39 - U - - - ML 169 168 3 171 3 1 1 7 25 -16.652 -0.000 -15.307 -1.603 -1.672 -5.288 1.736 D 170 168 3 171 3 0 0 10 28 -11.358 -0.028 -5.750 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 40 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.981 -6.915 -6.454 -4.936 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 176 125 1 177 3 0 3 473 1034 -16.666 -0.000 -15.320 IL 177 177 2 177 3 1 1 474 1035 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 46 - G - - - ML 178 177 2 180 5 1 3 473 1034 -15.599 -0.000 -15.414 -15.627 -16.518 -0.326 -6.236 1.605 -2.768 D 179 177 2 180 5 0 0 470 1031 -4.959 -0.803 -4.221 -2.596 -2.508 IL 180 180 3 180 5 1 1 472 1034 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 47 118 U A - - MP 181 180 3 185 6 2 3 472 1033 -16.531 -7.141 -0.010 -15.247 -15.527 -15.922 -11.022 -10.735 -11.001 -2.340 -5.770 -11.810 1.000 -10.508 -5.213 -4.544 -11.366 -4.692 3.677 -4.781 -0.779 -1.927 ML 182 180 3 185 6 1 1 469 1030 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 3 185 6 1 1 469 1030 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 3 185 6 0 0 464 1025 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 471 1032 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 471 1032 -5.450 -0.052 -8.961 -7.129 -8.235 0.000 0.000 0.000 0.000 [ MATP 31 ] 48 116 c g - - MP 187 186 6 191 6 2 3 470 1031 -7.098 -7.032 -0.022 -15.247 -15.527 -15.922 -10.830 -10.531 -6.393 0.879 -4.461 -7.882 2.882 -10.348 -7.123 -1.373 -11.201 -8.097 2.568 -6.303 -1.413 -6.965 ML 188 186 6 191 6 1 1 467 1029 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 467 1028 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 463 1024 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 469 1030 -6.311 -6.574 -0.045 -8.229 -9.005 -8.666 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 469 1030 -5.547 -0.048 -9.058 -7.226 -8.331 0.000 0.000 0.000 0.000 [ MATP 32 ] 50 114 u a - - MP 193 192 6 197 6 2 3 468 1029 -16.531 -16.470 -0.000 -15.247 -15.527 -15.922 -10.295 -10.155 -5.074 1.213 -2.610 -4.886 2.367 -5.489 -10.282 0.975 -4.341 -7.954 2.514 -6.521 -1.196 -3.450 ML 194 192 6 197 6 1 1 466 1027 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 465 1026 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 462 1023 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 467 1028 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 467 1028 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 51 113 G C - - MP 199 198 6 203 6 2 2 466 1027 -16.531 -16.470 -0.001 -15.247 -15.527 -10.103 -6.995 -2.451 -7.619 -2.719 -11.447 -3.780 1.119 -6.858 -4.674 3.542 -4.428 0.577 -4.861 -2.997 -5.985 -9.282 ML 200 198 6 203 6 1 1 464 1025 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 463 1025 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 462 1023 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 465 1026 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 465 1026 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 52 112 C G - - MP 205 204 6 209 4 2 2 464 1025 -15.755 -15.962 -0.001 -11.531 -10.835 -10.537 -5.161 -3.911 -1.940 -11.677 3.363 -4.275 -10.693 0.346 -11.206 -6.800 1.749 -11.018 -2.110 -1.216 ML 206 204 6 209 4 1 1 463 1024 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 461 1023 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 461 1023 -6.345 -6.026 -0.379 -2.297 IL 209 209 5 209 4 1 1 463 1025 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 463 1024 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 53 - C - - - ML 211 210 6 213 3 1 1 462 1023 -16.665 -0.000 -15.319 -6.727 1.340 -6.651 0.535 D 212 210 6 213 3 0 0 459 1021 -7.258 -0.568 -1.649 IL 213 213 3 213 3 1 1 462 1023 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 54 - U - - - ML 214 213 3 216 3 1 1 461 1022 -16.666 -0.000 -11.632 -13.362 -4.600 -14.572 1.985 D 215 213 3 216 3 0 0 456 1017 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 461 1022 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 55 - u - - - ML 217 216 3 219 3 1 1 460 1021 -16.665 -0.000 -15.319 0.002 -0.002 -0.002 0.002 D 218 216 3 219 3 0 0 454 1015 -7.258 -0.568 -1.649 IL 219 219 3 219 3 1 1 459 1020 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 56 - u - - - ML 220 219 3 222 3 1 1 459 1020 -7.191 -0.010 -15.320 0.002 -0.002 -0.002 0.002 D 221 219 3 222 3 0 0 440 1001 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 459 1020 -4.369 -0.083 -7.069 0.000 0.000 0.000 0.000 [ MATL 39 ] 58 - c - - - ML 223 222 3 225 3 1 1 458 1019 -16.666 -0.000 -15.320 -0.008 0.027 -0.012 -0.008 D 224 222 3 225 3 0 0 425 986 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 456 1017 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 59 - A - - - ML 226 225 3 228 3 1 1 457 1018 -1.748 -0.510 -15.320 1.846 -4.272 -1.567 -6.101 D 227 225 3 228 3 0 0 362 923 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 493 1054 -0.047 -4.953 -17.267 0.000 0.000 0.000 0.000 [ MATL 41 ] 111 - C - - - ML 229 228 3 231 2 1 1 1 1 * 0.000 -0.968 1.693 -5.664 -2.086 D 230 228 3 231 2 0 0 0 0 * 0.000 IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 232 231 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-Val ACC euk-Val-r2-031616 LENG 73 MAXL 521 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 17 15:20:45 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-Val-r2-031616.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-Val-r2-031616.sto NSEQ 1577 EFFN 17.202116 CKSUM 1979456034 STATS LOCAL MSV -8.4501 0.71877 STATS LOCAL VITERBI -9.1601 0.71877 STATS LOCAL FORWARD -3.7722 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53886 1.42947 1.25024 1.34899 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 0.00000 * 1 2.19411 2.91372 0.24656 2.94151 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01732 4.96751 4.58478 1.46634 0.26236 1.09861 0.40547 2 2.13819 1.52186 1.08586 1.12020 3 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02742 4.96426 3.90905 1.46634 0.26236 1.24309 0.34037 3 2.65871 1.37608 2.47556 0.52209 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.95110 4.93180 1.46634 0.26236 1.27555 0.32750 4 2.12884 1.30686 2.38327 0.65757 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02393 4.09850 4.95443 0.70496 0.68147 1.56325 0.23503 5 2.76521 0.66803 1.64639 1.46285 8 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01420 4.95457 4.95457 1.46634 0.26236 0.53197 0.88539 6 2.12572 0.83596 1.52641 1.47020 9 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 7 1.57973 2.64930 0.46210 2.37185 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02725 3.96420 4.84153 0.95611 0.48513 1.09861 0.40547 8 3.88879 3.48448 4.22343 0.06805 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.02010 4.34805 4.96658 0.86434 0.54702 1.05879 0.42599 9 0.67320 4.19373 0.79163 3.82909 16 A - - , 1.38629 1.38629 1.38629 1.38629 0.02133 4.25887 4.96719 0.80046 0.59624 1.06819 0.42103 10 2.42144 3.14295 0.20358 2.95172 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 11 3.07663 1.59490 2.80090 0.37077 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 12 2.38348 1.97006 0.37828 2.48552 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 13 2.37406 2.11005 3.26119 0.29126 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 14 0.03524 4.71035 4.16974 4.58884 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 15 3.39657 4.65282 0.05900 4.24938 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 16 3.52787 2.46630 3.95909 0.14312 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.29318 1.39775 4.96751 0.32257 1.28840 1.09861 0.40547 17 4.37891 5.90760 0.02043 5.30586 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02093 4.96751 4.28687 1.46634 0.26236 1.09861 0.40547 18 3.93198 4.83774 0.03827 4.60325 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01412 4.96070 4.96070 1.46634 0.26236 0.69942 0.68691 19 3.28955 2.18059 3.82177 0.18891 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08981 2.64300 4.21663 0.87298 0.54078 1.09861 0.40547 20 2.42236 2.42797 3.76181 0.22336 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01413 4.95969 4.95969 1.46634 0.26236 0.66470 0.72243 21 0.03232 4.76977 4.54538 4.36572 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 22 2.14784 3.30320 1.98572 0.34359 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 23 2.82406 0.40915 1.82864 2.15595 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.02052 4.31621 4.96751 0.84049 0.56475 1.09861 0.40547 24 0.42984 2.95931 1.44148 2.79761 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 25 3.25606 0.30679 2.95023 1.75259 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 26 1.63412 3.65543 0.32679 2.85093 46 G - - , 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 27 2.85969 1.60733 2.66543 0.39642 47 U - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 28 2.06561 0.87120 2.45067 0.99811 48 c - - < 1.38629 1.38629 1.38629 1.38629 0.02033 4.33038 4.96751 0.85072 0.55706 1.09861 0.40547 29 1.79851 1.15749 1.81010 1.03130 50 u - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 30 2.31404 2.06454 0.33197 2.86907 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.01479 4.96751 4.86391 1.46634 0.26236 1.09861 0.40547 31 2.83684 0.61245 2.10299 1.28274 52 C - - < 1.38629 1.38629 1.38629 1.38629 0.01428 4.96675 4.93196 1.46634 0.26236 1.03075 0.44120 32 3.27108 0.51685 3.94451 1.06051 53 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96727 4.96727 1.46634 0.26236 1.07555 0.41720 33 4.47313 3.78717 4.99713 0.04169 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01427 4.96751 4.93272 1.46634 0.26236 1.09861 0.40547 34 1.31586 1.46330 1.47408 1.30454 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96727 4.96727 1.46634 0.26236 1.07555 0.41720 35 1.31587 1.46329 1.47406 1.30456 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01991 4.36191 4.96751 0.87393 0.54010 1.09861 0.40547 36 1.32039 1.44816 1.47937 1.30865 58 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 37 0.15033 3.61142 2.40126 3.81858 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.30981 1.34917 4.96751 3.42106 0.03322 1.09861 0.40547 38 2.09570 0.28151 3.89864 2.28180 111 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01479 4.96751 4.86391 1.46634 0.26236 1.09861 0.40547 39 1.43716 2.20892 0.57802 2.39062 112 G - - > 1.38629 1.38629 1.38629 1.38629 0.01403 4.96675 4.96675 1.46634 0.26236 1.03075 0.44120 40 3.18855 0.43202 1.99888 1.74823 113 C - - > 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 41 1.15154 1.90634 1.05081 1.68430 114 g - - > 1.38629 1.38629 1.38629 1.38629 0.02063 4.30847 4.96751 0.83494 0.56898 1.09861 0.40547 42 1.10510 2.59433 0.79256 1.95586 116 g - - > 1.38629 1.38629 1.38629 1.38629 0.02014 4.34443 4.96751 0.86099 0.54947 1.09861 0.40547 43 0.48492 2.85604 1.41310 2.48446 118 A - - > 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 44 0.14974 3.54047 3.51164 2.52303 119 A - - , 1.38629 1.38629 1.38629 1.38629 0.03008 4.20199 4.22196 0.76210 0.62864 1.09861 0.40547 45 2.92976 3.42689 0.13683 3.17055 121 G - - , 1.38629 1.38629 1.38629 1.38629 0.10766 2.35336 4.95977 2.30427 0.10517 0.66729 0.71969 46 2.57397 3.30083 0.22000 2.47220 141 G - - , 1.38629 1.38629 1.38629 1.38629 0.02113 4.34097 4.84271 0.85845 0.55133 1.09861 0.40547 47 3.30684 2.67086 4.05043 0.13152 143 U - - , 1.38629 1.38629 1.38629 1.38629 0.01403 4.96659 4.96659 1.46634 0.26236 1.01716 0.44882 48 3.71075 0.17427 3.86469 2.16714 144 C - - , 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 49 2.14752 0.61363 1.63870 1.91317 145 C - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 50 2.74319 0.72191 1.56602 1.42322 146 c - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 51 2.28908 0.83925 1.20546 1.78944 147 c - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 52 1.55383 3.12622 0.36591 2.97371 148 G - - < 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 53 3.43338 4.29414 0.06789 3.92643 149 G - - < 1.38629 1.38629 1.38629 1.38629 0.01410 4.96751 4.95544 1.46634 0.26236 1.09861 0.40547 54 3.41112 3.22780 4.02176 0.09494 150 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96743 4.96743 1.46634 0.26236 1.09058 0.40951 55 4.03039 3.80301 4.34677 0.05448 151 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 56 4.30410 0.06457 4.38260 3.30987 152 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 57 2.00660 3.42818 0.22445 3.37697 153 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 58 0.03099 4.74745 4.45708 4.58144 154 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01995 4.35913 4.96751 0.87186 0.54158 1.09861 0.40547 59 1.07753 2.79219 1.37352 1.06403 156 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02187 4.30869 4.80556 0.83510 0.56886 1.09861 0.40547 60 1.36804 0.68357 3.38062 1.57718 158 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01404 4.96629 4.96629 1.46634 0.26236 0.99361 0.46242 61 4.17604 0.07707 4.14072 3.14884 159 C - - > 1.38629 1.38629 1.38629 1.38629 0.01413 4.96751 4.95253 1.46634 0.26236 1.09861 0.40547 62 3.25543 0.40003 2.94739 1.43272 160 C - - > 1.38629 1.38629 1.38629 1.38629 0.01413 4.96741 4.95254 1.46634 0.26236 1.10363 0.40296 63 2.11630 1.29393 0.74484 2.03621 161 g - - > 1.38629 1.38629 1.38629 1.38629 0.01402 4.96730 4.96730 1.46634 0.26236 1.07896 0.41544 64 1.66221 1.66138 0.63488 2.40343 162 G - - > 1.38629 1.38629 1.38629 1.38629 0.01429 4.96751 4.92994 1.46634 0.26236 1.09861 0.40547 65 2.16941 1.69205 0.56408 2.01944 163 G - - > 1.38629 1.38629 1.38629 1.38629 0.01402 4.96725 4.96725 1.46634 0.26236 1.07372 0.41815 66 2.50953 0.52981 2.50739 1.39232 164 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01530 4.96751 4.80031 1.46634 0.26236 1.09861 0.40547 67 1.79570 1.83479 0.70827 1.70460 165 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02354 4.35964 4.55765 0.87318 0.54063 1.15751 0.37727 68 1.53394 1.83680 0.64450 2.30195 167 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01409 4.96272 4.96272 1.46634 0.26236 1.13753 0.38656 69 0.83594 2.51319 1.05122 1.99502 168 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01407 4.96399 4.96399 1.46634 0.26236 1.25411 0.33594 70 0.56844 2.61284 1.29202 2.45865 169 A - - ) 1.38629 1.38629 1.38629 1.38629 0.02034 4.33131 4.96399 0.85396 0.55465 0.84551 0.56096 71 1.21183 1.58612 1.41971 1.36319 171 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01402 4.96751 4.96751 1.46634 0.26236 1.09861 0.40547 72 3.23864 0.29391 2.70552 1.90649 172 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03165 3.72167 4.96751 1.18176 0.36635 1.09861 0.40547 73 0.13097 3.69160 3.53343 2.67921 176 A - - : 1.38629 1.38629 1.38629 1.38629 0.00703 4.96053 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-bact-iso0000644000543100007160000464231413054776714017602 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME bact-Ala ACC bact-Ala-r2-022416 STATES 242 NODES 65 CLEN 76 W 1218 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 04:10:05 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ala-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ala-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 16031 EFFN 16031.000000 CKSUM 216812631 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.3255 0.71881 ECMLC 0.65360 -8.44316 0.96841 1600000 563228 0.002131 ECMGC 0.27502 -40.60883 -26.81784 1600000 17753 0.022531 ECMLI 0.63636 -8.38822 1.20496 1600000 537571 0.002232 ECMGI 0.27613 -39.08567 -25.48854 1600000 17087 0.023410 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1218 2563 -18.894 -20.140 -0.847 -1.172 IL 1 1 2 1 4 30 52 1222 2566 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 31 52 1222 2567 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 277 - A - - MR 3 2 3 5 3 32 52 1221 2566 -19.456 -0.000 -17.774 2.000 -15.081 -14.358 -14.411 D 4 2 3 5 3 28 48 1218 2563 -20.225 -15.403 -0.000 IR 5 5 3 5 3 31 52 1221 2566 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 276 - C - - MR 6 5 3 8 3 31 51 1220 2565 -19.456 -0.000 -17.774 -16.251 2.000 -17.542 -14.289 D 7 5 3 8 3 28 48 1218 2563 -20.225 -15.403 -0.000 IR 8 8 3 8 3 31 51 1220 2565 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 275 - C - - MR 9 8 3 11 3 30 50 1219 2564 -19.456 -0.000 -17.774 -16.251 2.000 -17.542 -14.289 D 10 8 3 11 3 28 48 1218 2563 -20.225 -0.000 -12.316 IR 11 11 3 11 3 24 44 1219 2563 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 274 - A - - MR 12 11 3 14 5 29 49 1218 2563 -7.041 -0.027 -18.758 -6.521 -19.862 1.703 -2.782 -5.344 -0.800 D 13 11 3 14 5 20 40 1209 2554 -6.517 -1.871 -4.143 -5.574 -0.648 IR 14 14 3 14 5 28 48 1218 2563 -8.723 -0.005 -12.234 -10.402 -11.507 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 272 G C - - MP 15 14 3 19 6 28 48 1217 2562 -19.855 -19.794 -0.000 -15.252 -18.850 -19.245 -17.832 -12.916 -20.393 -4.566 -19.440 -13.229 0.255 -19.742 -14.172 3.845 -14.231 -1.359 -14.084 -13.311 -16.174 -19.625 ML 16 14 3 19 6 23 43 1214 2559 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 27 47 1215 2559 -14.766 -13.495 -0.378 -13.473 -2.120 -11.687 -8.457 1.946 -8.847 -2.815 D 18 14 3 19 6 20 39 1204 2549 -10.624 -9.322 -5.119 -5.801 -5.819 -0.099 IL 19 19 5 19 6 24 44 1215 2560 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 24 44 1215 2560 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 271 G C - - MP 21 20 6 25 6 26 46 1215 2560 -19.867 -19.806 -0.012 -9.347 -11.976 -7.259 -16.094 -1.976 -16.259 0.043 -17.188 -13.179 1.579 -16.838 -5.762 3.543 -15.574 -8.215 -5.541 -5.247 -14.200 -15.231 ML 22 20 6 25 6 24 44 1213 2557 -6.861 -7.207 -0.715 -1.616 -7.057 -4.586 -0.081 -0.990 0.850 -0.419 MR 23 20 6 25 6 26 45 1210 2555 -12.658 -11.387 -3.470 -11.365 -0.140 -9.579 -6.061 1.889 -6.567 -1.879 D 24 20 6 25 6 20 39 1204 2548 -10.624 -9.322 -5.119 -5.801 -5.819 -0.099 IL 25 25 5 25 6 24 44 1214 2558 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 24 44 1213 2558 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 270 G U - - MP 27 26 6 31 6 30 49 1213 2558 -5.384 -19.795 -0.044 -7.507 -11.906 -19.246 -15.515 -14.491 -15.252 -0.060 -4.682 -15.812 0.279 -8.172 -15.429 1.345 -15.707 3.463 -3.160 -15.414 -3.687 -5.019 ML 28 26 6 31 6 26 45 1210 2555 -11.433 -11.779 -5.262 -0.042 -11.629 -9.158 -5.474 -7.181 1.984 -6.223 MR 29 26 6 31 6 25 44 1209 2553 -12.676 -11.405 -3.761 -11.384 -0.114 -9.597 -4.624 -4.465 -1.914 1.867 D 30 26 6 31 6 20 39 1203 2548 -16.653 -15.351 -11.148 -11.830 -11.848 -0.001 IL 31 31 5 31 6 26 45 1211 2555 -0.582 -13.095 -11.013 -14.751 -1.595 -15.187 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 24 44 1212 2556 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 269 G C - - MP 33 32 6 37 6 28 47 1211 2556 -19.812 -7.395 -0.009 -18.528 -18.808 -19.203 -15.084 -3.196 -15.026 -0.834 -16.069 -15.063 0.162 -15.612 -14.915 3.749 -15.175 -6.194 -0.427 -14.649 -6.570 -13.965 ML 34 32 6 37 6 25 44 1209 2554 -13.585 -13.931 -1.014 -0.988 -13.781 -11.310 -7.225 -8.453 1.662 -0.276 MR 35 32 6 37 6 24 43 1208 2552 -16.034 -14.763 -5.496 -14.741 -0.033 -12.955 -11.019 1.999 -11.724 -9.622 D 36 32 6 37 6 20 39 1203 2548 -16.653 -15.351 -9.078 -11.830 -11.848 -0.004 IL 37 37 5 37 6 24 44 1210 2555 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 27 46 1210 2555 -8.316 -0.007 -11.828 -9.995 -11.101 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 267 c g - - MP 39 38 6 43 6 26 45 1209 2554 -6.881 -7.312 -0.022 -18.534 -12.569 -19.209 -7.038 -13.647 -14.068 0.881 -11.132 -7.031 2.969 -11.494 -13.977 1.927 -2.691 0.447 -0.793 -14.213 -1.279 -8.545 ML 40 38 6 43 6 24 43 1207 2552 -12.606 -12.952 -7.666 -0.009 -12.802 -10.331 -7.395 1.992 -7.866 -6.425 MR 41 38 6 43 6 23 42 1206 2551 -16.003 -14.732 -10.641 -14.710 -0.001 -12.924 -10.504 -10.565 1.256 0.688 D 42 38 6 43 6 20 39 1203 2548 -16.651 -15.349 -11.146 -11.828 -11.846 -0.001 IL 43 43 5 43 6 25 44 1208 2553 -9.714 -9.977 -0.004 -11.632 -12.408 -12.068 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 25 44 1208 2553 -8.404 -0.007 -11.915 -10.083 -11.189 0.000 0.000 0.000 0.000 [ MATP 10 ] 11 265 u a - - MP 45 44 6 49 6 24 43 1207 2552 -5.184 -19.757 -0.041 -11.665 -18.813 -19.208 -14.114 -13.815 -6.681 0.578 -10.892 -14.958 2.260 -13.633 -13.972 1.372 -14.486 -7.569 2.751 -2.692 -2.390 -4.765 ML 46 44 6 49 6 23 42 1206 2551 -12.606 -12.952 -0.011 -7.361 -12.802 -10.331 -7.395 1.992 -7.866 -6.425 MR 47 44 6 49 6 22 41 1205 2550 -16.012 -14.741 -0.699 -14.719 -1.382 -12.932 0.851 -4.248 -0.789 0.646 D 48 44 6 49 6 20 39 1203 2548 -16.651 -15.349 -4.939 -11.828 -11.846 -0.049 IL 49 49 5 49 6 23 42 1206 2551 -11.404 -11.666 -0.001 -13.322 -14.098 -13.758 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 23 42 1206 2551 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 13 264 a u - - MP 51 50 6 55 4 22 41 1205 2550 -19.077 -19.284 -0.001 -11.216 -4.141 -5.331 -12.476 2.631 -14.766 -14.247 -0.284 -7.336 -14.081 2.297 -5.230 -3.485 1.950 -13.505 -11.844 -12.611 ML 52 50 6 55 4 21 40 1204 2549 -6.359 -6.541 -0.072 -5.271 1.911 -3.929 -3.426 -3.622 MR 53 50 6 55 4 21 40 1204 2548 -12.658 -11.687 -0.101 -3.902 1.537 0.104 -7.138 -6.030 D 54 50 6 55 4 20 39 1203 2548 -12.026 -11.708 -0.007 -7.978 IL 55 55 5 55 4 21 40 1205 2549 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 21 40 1204 2549 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 14 - U - - - ML 57 56 6 59 3 20 39 1203 2548 -20.008 -0.000 -18.662 -5.037 -13.375 -5.974 1.983 D 58 56 6 59 3 19 38 1202 2547 -11.569 -0.024 -5.960 IL 59 59 3 59 3 20 39 1203 2548 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - A - - - ML 60 59 3 62 2 19 38 1202 2547 -7.604 -0.007 1.793 -5.563 -0.987 -6.892 D 61 59 3 62 2 18 37 1201 2546 -8.445 -0.004 IL 62 62 3 62 2 19 38 1202 2547 -8.298 -0.005 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 18 37 1201 2546 [ BEGR 46 ] - - - - - - S 64 63 1 65 3 0 7 1167 2512 -20.010 -0.000 -18.664 IL 65 65 2 65 3 1 7 1169 2514 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 70 - A - - - ML 66 65 2 68 3 1 7 1167 2512 -20.010 -0.055 -4.752 1.709 -4.154 -0.781 -3.450 D 67 65 2 68 3 0 2 1173 2518 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 1168 2513 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 71 - G - - - ML 69 68 3 71 3 1 7 1166 2510 -1.854 -0.467 -18.609 -2.630 -7.162 1.903 -3.445 D 70 68 3 71 3 0 2 1176 2521 -1.535 -0.617 -8.438 IL 71 71 3 71 3 1 8 1241 2586 -0.022 -6.047 -21.610 0.000 0.000 0.000 0.000 [ MATL 49 ] 162 - G - - - ML 72 71 3 74 3 1 6 1078 2418 -20.010 -0.000 -18.664 -4.027 -3.438 1.894 -2.957 D 73 71 3 74 3 0 0 1084 2424 -8.347 -3.860 -0.108 IL 74 74 3 74 3 1 2 1079 2419 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 163 - U - - - ML 75 74 3 77 3 1 5 1077 2417 -20.010 -0.000 -18.664 -0.721 -3.965 -4.930 1.721 D 76 74 3 77 3 0 0 1085 2425 -8.347 -0.239 -2.739 IL 77 77 3 77 3 1 1 1083 2423 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 164 - C - - - ML 78 77 3 80 5 1 4 1076 2416 -18.943 -0.001 -18.758 -10.017 -19.862 -1.191 1.697 -5.592 -1.739 D 79 77 3 80 5 0 0 1122 2461 -4.959 -0.803 -4.221 -2.596 -2.508 IL 80 80 3 80 5 1 1 1086 2426 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 165 263 a u - - MP 81 80 3 85 6 2 8 1075 2414 -19.869 -19.809 -0.009 -8.549 -8.156 -19.260 -13.215 -4.285 -13.095 2.971 -14.766 -14.250 0.586 -14.338 -14.090 1.752 -14.337 1.332 -0.644 -9.476 -3.697 -11.936 ML 82 80 3 85 6 1 1 1087 2426 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 1174 2513 -11.333 -10.062 -5.971 -10.041 -5.174 -0.068 1.979 -6.060 -5.461 -5.684 D 84 80 3 85 6 0 0 1163 2503 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 1084 2423 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 1081 2421 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 166 262 g c - - MP 87 86 6 91 6 2 9 1073 2412 -19.860 -19.800 -0.000 -18.576 -18.856 -19.251 -13.886 -12.658 -13.733 0.503 -8.363 -14.364 1.103 -8.995 -5.671 2.949 -12.432 0.683 0.939 -13.633 -5.679 0.195 ML 88 86 6 91 6 1 2 1072 2412 -12.217 -12.564 -0.014 -6.972 -12.413 -9.943 1.993 -7.650 -6.942 -7.088 MR 89 86 6 91 6 1 2 1072 2411 -13.143 -11.872 -7.781 -11.851 -0.009 -10.064 1.994 -8.026 -7.298 -7.433 D 90 86 6 91 6 0 0 1175 2515 -13.923 -12.622 -8.419 -9.101 -9.118 -0.010 IL 91 91 5 91 6 1 1 1084 2423 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 1080 2420 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 167 261 c g - - MP 93 92 6 97 6 2 7 1071 2410 -19.864 -7.084 -0.011 -18.580 -18.860 -19.255 -13.834 -3.348 -13.653 0.254 -4.338 -12.403 2.913 -12.426 -14.088 2.571 -12.284 0.189 -5.021 -13.509 -6.345 -12.616 ML 94 92 6 97 6 1 1 1098 2438 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 2 1070 2410 -13.143 -11.872 -7.781 -11.851 -0.009 -10.064 1.994 -8.026 -7.298 -7.433 D 96 92 6 97 6 0 0 1175 2515 -13.923 -12.622 -8.419 -9.101 -9.118 -0.010 IL 97 97 5 97 6 1 1 1081 2420 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 3 1070 2409 -8.675 -0.005 -12.186 -10.354 -11.459 0.000 0.000 0.000 0.000 [ MATP 55 ] 168 259 G C - - MP 99 98 6 103 6 2 5 1069 2408 -7.594 -19.803 -0.007 -18.580 -18.860 -19.255 -17.690 -4.544 -19.595 0.977 -19.320 -5.570 -13.675 -19.273 -13.096 3.658 -13.125 -0.387 -0.787 -16.047 -16.096 -18.574 ML 100 98 6 103 6 1 1 1099 2439 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 2 1069 2409 -13.143 -11.872 -0.014 -11.851 -6.984 -10.064 -6.529 -8.294 1.993 -7.290 D 102 98 6 103 6 0 0 1176 2515 -13.923 -12.622 -8.419 -9.101 -9.118 -0.010 IL 103 103 5 103 6 1 3 1068 2408 -9.053 -9.316 -0.007 -10.971 -11.747 -11.407 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 1086 2426 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 170 258 G C - - MP 105 104 6 109 4 2 3 1067 2406 -19.099 -7.599 -0.007 -17.720 -17.848 -14.424 -20.419 -4.146 -19.455 -0.792 -13.728 -19.763 -9.067 3.933 -15.983 -5.680 -3.934 -8.012 -16.189 -19.659 ML 106 104 6 109 4 1 1 1100 2439 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 1150 2489 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 1176 2516 -9.349 -9.030 -7.046 -0.016 IL 109 109 5 109 4 1 1 1079 2418 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 2 1066 2406 -7.130 -0.012 -9.830 0.000 0.000 0.000 0.000 [ MATL 57 ] 171 - U - - - ML 111 110 6 113 3 1 1 1065 2404 -20.008 -0.339 -2.254 -17.227 -15.887 -6.011 1.994 D 112 110 6 113 3 0 0 1177 2516 -11.447 -6.960 -0.012 IL 113 113 3 113 3 1 1 1004 2343 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 172 - U - - - ML 114 113 3 116 3 1 3 187 1527 -19.669 -0.000 -18.323 -16.841 -15.529 -5.363 1.991 D 115 113 3 116 3 0 0 1177 2517 -0.007 -14.693 -7.745 IL 116 116 3 116 3 1 3 1178 2517 -0.020 -6.194 -21.342 0.000 0.000 0.000 0.000 [ MATL 59 ] 250 - C - - - ML 117 116 3 119 3 1 3 9 27 -20.008 -0.000 -18.663 -4.131 1.925 -13.748 -2.790 D 118 116 3 119 3 0 0 13 31 -11.447 -6.960 -0.012 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 251 - G - - - ML 120 119 3 122 3 1 2 7 25 -7.544 -0.008 -18.663 -1.262 -14.730 1.838 -7.063 D 121 119 3 122 3 0 0 11 29 -11.447 -6.960 -0.012 IL 122 122 3 122 3 1 1 7 25 -7.185 -0.011 -9.885 0.000 0.000 0.000 0.000 [ MATL 61 ] 253 - A - - - ML 123 122 3 125 3 1 1 6 24 -20.008 -0.000 -18.663 2.000 -14.694 -14.260 -14.375 D 124 122 3 125 3 0 0 11 29 -11.447 -0.026 -5.838 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 254 - u - - - ML 126 125 3 128 3 1 1 4 7 -4.684 -0.063 -8.153 0.153 -1.206 -0.316 0.724 D 127 125 3 128 3 0 0 3 6 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 4 6 -10.023 -0.002 -12.723 0.000 0.000 0.000 0.000 [ MATL 63 ] 256 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -5.398 0.396 -2.376 1.303 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 4 16 70 120 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 185 4 16 70 120 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 4 52 102 -0.023 -15.262 -5.973 -18.048 [ MATP 18 ] 17 42 G C - - MP 136 135 1 140 6 2 6 52 102 -19.848 -19.787 -0.004 -8.420 -18.843 -19.238 -17.826 -8.283 -20.394 -3.450 -19.433 -4.895 -13.706 -19.739 -15.774 3.880 -15.961 0.172 -14.077 -5.554 -16.167 -19.631 ML 137 135 1 140 6 1 1 51 101 -6.835 -7.181 -0.732 -1.590 -7.031 -4.561 -0.060 -0.965 0.823 -0.398 MR 138 135 1 140 6 1 3 48 98 -15.311 -14.040 -7.763 -14.018 -0.007 -12.232 -9.949 0.720 1.233 -9.132 D 139 135 1 140 6 0 0 47 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 2 51 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 2 51 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 41 C G - - MP 142 141 6 146 6 2 5 50 100 -19.843 -19.783 -0.001 -18.559 -11.222 -19.234 -16.902 -17.184 -16.220 -13.421 -14.570 -16.364 3.832 -15.485 -16.323 -1.474 -5.016 -15.588 0.280 -16.736 -2.722 -15.125 ML 143 141 6 146 6 1 2 49 99 -12.323 -12.669 -0.013 -7.078 -12.519 -10.049 -7.073 1.990 -7.534 -6.128 MR 144 141 6 146 6 1 2 47 97 -15.306 -14.035 -1.358 -14.013 -0.714 -12.227 -8.581 -10.352 1.998 -9.339 D 145 141 6 146 6 0 0 45 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 49 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 2 49 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 40 U A - - MP 148 147 6 152 6 2 4 48 98 -19.856 -19.795 -0.033 -5.487 -11.846 -19.247 -4.272 -6.577 -14.156 -2.822 -0.311 -4.664 -1.144 -13.675 -4.142 0.790 -14.528 -7.875 3.601 -14.339 -0.876 -5.348 ML 149 147 6 152 6 1 1 48 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 2 43 93 -14.654 -13.383 -9.292 -13.362 -0.003 -11.575 1.998 -9.430 -8.667 -8.780 D 151 147 6 152 6 0 0 44 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 47 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 47 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 39 C G - - MP 154 153 6 158 4 2 3 46 96 -19.053 -19.260 -0.015 -6.621 -16.882 -17.164 -4.556 -5.766 -1.228 -5.322 3.778 -1.052 -16.303 -13.372 -3.912 -15.568 0.032 -16.716 -2.540 -5.250 ML 155 153 6 158 4 1 2 48 99 -0.004 -12.514 -9.080 -11.243 -9.048 -10.817 1.999 -9.805 MR 156 153 6 158 4 1 1 42 92 -12.717 -11.746 -9.613 -0.002 -7.984 -9.758 1.997 -8.745 D 157 153 6 158 4 0 0 43 93 -4.568 -4.250 -2.265 -0.520 IL 158 158 5 158 4 1 3 47 98 -10.470 -0.003 -9.901 -13.639 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 2 46 97 -1.001 -1.000 -12.905 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 160 159 6 162 3 1 3 44 94 -19.980 -0.000 -18.635 1.959 -5.923 -5.923 -3.656 D 161 159 6 162 3 0 0 41 91 -15.799 -1.062 -0.941 IL 162 162 3 162 3 1 1 44 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 163 162 3 165 3 1 2 43 93 -19.995 -0.004 -8.662 -1.067 -5.841 1.714 -2.150 D 164 162 3 165 3 0 0 24 74 -14.859 -10.372 -0.001 IL 165 165 3 165 3 1 1 43 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 166 165 3 168 3 1 1 42 92 -19.991 -0.483 -1.813 -1.425 1.013 -3.654 0.613 D 167 165 3 168 3 0 0 22 72 -15.160 -10.673 -0.001 IL 168 168 3 168 3 1 1 43 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 169 168 3 171 3 1 2 42 92 -4.158 -0.083 -18.162 -3.335 -2.472 -13.238 1.896 D 170 168 3 171 3 0 0 12 62 -19.662 -0.012 -6.902 IL 171 171 3 171 3 1 2 49 99 -0.531 -1.700 -14.445 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - G - - - ML 172 171 3 174 3 1 2 9 26 -20.006 -0.000 -18.660 -5.698 -16.296 1.984 -5.264 D 173 171 3 174 3 0 0 11 30 -12.765 -8.278 -0.005 IL 174 174 3 174 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - G - - - ML 175 174 3 177 3 1 1 8 25 -20.006 -0.014 -6.741 -5.511 -16.303 1.992 -15.276 D 176 174 3 177 3 0 0 10 29 -12.765 -8.278 -0.005 IL 177 177 3 177 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - g - - - ML 178 177 3 180 3 1 1 7 12 -1.710 -0.526 -18.647 -3.882 -0.025 0.712 0.391 D 179 177 3 180 3 0 0 6 11 -0.338 -2.268 -9.414 IL 180 180 3 180 3 1 1 6 11 -5.135 -0.042 -15.762 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - A - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.902 -6.436 -2.032 -7.147 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 185 134 1 186 3 0 2 40 69 -20.010 -0.000 -18.664 IL 186 186 2 186 3 1 1 42 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 43 - G - - - ML 187 186 2 189 5 1 2 40 69 -18.943 -0.009 -7.296 -18.970 -19.862 0.021 -15.251 1.567 -5.447 D 188 186 2 189 5 0 0 39 68 -4.959 -0.803 -4.221 -2.596 -2.508 IL 189 189 3 189 5 1 1 40 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 44 69 C G - - MP 190 189 3 194 6 2 5 39 68 -19.861 -19.801 -0.000 -15.386 -16.252 -19.252 -14.160 -13.861 -4.552 0.744 -2.732 -15.004 3.519 -13.679 -8.135 0.426 -11.196 -5.143 0.242 -14.343 -3.175 -12.737 ML 191 189 3 194 6 1 1 35 64 -13.459 -13.805 -8.519 -8.214 -13.655 -0.009 -8.420 1.996 -8.934 -7.350 MR 192 189 3 194 6 1 1 38 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 3 194 6 0 0 35 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 39 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 38 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 45 68 C G - - MP 196 195 6 200 6 2 3 37 66 -6.377 -19.801 -0.189 -3.176 -18.857 -19.252 -14.390 -14.102 -14.365 0.065 -13.205 -11.074 3.386 -13.872 -14.233 -0.042 -14.729 -4.046 1.363 -14.563 -9.448 -0.162 ML 197 195 6 200 6 1 1 36 65 -6.813 -7.159 -0.747 -1.568 -7.009 -4.539 1.041 -0.909 -0.655 -0.369 MR 198 195 6 200 6 1 1 36 65 -7.267 -5.996 -1.174 -5.974 -1.108 -4.188 0.149 -0.726 0.504 -0.204 D 199 195 6 200 6 0 0 34 63 -16.604 -15.303 -11.100 -11.782 -11.799 -0.002 IL 200 200 5 200 6 1 4 36 65 -10.259 -10.521 -8.439 -12.177 -0.007 -12.613 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 37 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 47 67 U A - - MP 202 201 6 206 6 2 2 35 64 -19.673 -19.612 -0.571 -4.932 -18.668 -1.766 -12.328 -14.817 -15.527 0.891 -14.727 -16.549 0.109 -15.133 -10.385 1.437 -2.547 -12.249 3.346 -16.128 -12.296 -5.597 ML 203 201 6 206 6 1 1 35 64 -17.561 -17.907 -12.622 -7.165 -17.757 -0.010 -14.126 -12.738 -15.716 2.000 MR 204 201 6 206 6 1 3 35 64 -0.006 -13.630 -9.539 -13.608 -8.742 -11.822 1.998 -9.661 -8.896 -9.006 D 205 201 6 206 6 0 0 34 63 -16.604 -15.303 -11.100 -11.782 -11.799 -0.002 IL 206 206 5 206 6 1 4 34 63 -10.259 -10.521 -0.003 -12.177 -12.953 -12.613 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 34 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 49 66 G C - - MP 208 207 6 212 6 2 3 33 62 -19.131 -19.070 -0.204 -17.847 -2.920 -18.521 -13.129 -11.829 -12.960 -1.664 -13.741 -13.572 1.724 -2.902 -13.348 3.427 -13.620 -0.742 -0.401 -9.716 -3.347 -4.850 ML 209 207 6 212 6 1 2 23 52 -15.655 -16.001 -0.199 -2.958 -15.851 -13.381 -10.509 1.802 -11.064 -0.968 MR 210 207 6 212 6 1 1 34 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 211 207 6 212 6 0 0 34 63 -22.467 -21.165 -2.669 -17.644 -17.662 -0.247 IL 212 212 5 212 6 1 1 32 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 32 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 50 65 C G - - MP 214 213 6 218 4 2 2 17 46 -18.372 -18.579 -0.000 -16.993 -13.453 -13.154 -13.452 0.869 -5.641 -14.293 3.473 -12.970 -13.310 0.576 -13.823 -1.203 -0.280 -13.635 -1.892 -5.107 ML 215 213 6 218 4 1 1 25 54 -9.794 -9.977 -0.007 -8.706 -8.243 -7.384 -9.300 1.996 MR 216 213 6 218 4 1 1 34 63 -15.648 -0.001 -12.544 -11.605 -10.877 -12.633 2.000 -11.623 D 217 213 6 218 4 0 0 34 63 -0.000 -17.323 -15.339 -12.703 IL 218 218 5 218 4 1 1 34 63 -14.295 -0.000 -13.726 -17.464 0.000 0.000 0.000 0.000 IR 219 219 6 219 3 1 1 33 62 -0.908 -1.099 -17.153 0.000 0.000 0.000 0.000 [ MATL 38 ] 52 - c - - - ML 220 219 6 222 3 1 1 11 30 -20.010 -0.000 -18.664 -1.028 0.675 -1.509 0.643 D 221 219 6 222 3 0 0 18 36 -7.059 -2.572 -0.279 IL 222 222 3 222 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 53 - U - - - ML 223 222 3 225 3 1 1 10 29 -20.010 -0.000 -18.664 -13.545 -1.271 -6.322 1.837 D 224 222 3 225 3 0 0 17 35 -7.059 -2.572 -0.279 IL 225 225 3 225 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 54 - u - - - ML 226 225 3 228 3 1 1 9 28 -20.010 -0.000 -18.664 -0.425 -0.833 0.041 0.735 D 227 225 3 228 3 0 0 16 34 -7.059 -2.572 -0.279 IL 228 228 3 228 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 55 - c - - - ML 229 228 3 231 3 1 1 8 26 -20.010 -0.000 -18.664 -0.387 0.279 0.022 0.009 D 230 228 3 231 3 0 0 15 33 -7.059 -2.572 -0.279 IL 231 231 3 231 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 56 - u - - - ML 232 231 3 234 3 1 1 6 25 -20.010 -0.000 -18.664 -0.199 0.068 -0.286 0.334 D 233 231 3 234 3 0 0 14 32 -7.059 -2.572 -0.279 IL 234 234 3 234 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 57 - A - - - ML 235 234 3 237 3 1 1 5 23 -20.010 -0.000 -18.664 1.700 -6.545 -0.512 -4.655 D 236 234 3 237 3 0 0 13 31 -7.059 -2.572 -0.279 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 58 - c - - - ML 238 237 3 240 2 1 1 1 1 * 0.000 -0.220 0.709 -0.751 -0.132 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Ala ACC bact-Ala-r2-022416 LENG 76 MAXL 1172 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 04:10:07 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ala-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ala-r2-022416.sto NSEQ 16031 EFFN 12.173351 CKSUM 216812631 STATS LOCAL MSV -8.6986 0.71881 STATS LOCAL VITERBI -9.5379 0.71881 STATS LOCAL FORWARD -3.6933 0.71881 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52445 1.34886 1.22737 1.47115 1.38629 1.38629 1.38629 1.38629 0.01428 4.94903 4.94903 1.46634 0.26236 0.00000 * 1 3.23134 2.78220 0.12755 3.99854 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01428 4.94903 4.94903 1.46634 0.26236 1.09861 0.40547 2 1.96208 1.90913 0.43070 2.79410 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02001 4.95617 4.36090 1.46634 0.26236 1.09861 0.40547 3 2.07746 2.18018 0.38271 2.52920 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03468 3.61992 4.92028 0.90394 0.51915 1.33855 0.30412 4 2.11899 2.44672 0.34186 2.49103 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03445 4.95054 3.61985 1.46634 0.26236 1.34660 0.30127 5 1.90781 0.97270 1.20024 1.75785 9 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02193 4.24518 4.91196 0.81628 0.58353 1.89130 0.16355 6 2.06317 1.17787 1.69338 0.96464 11 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03823 3.49723 4.93050 0.42355 1.06340 0.81552 0.58413 7 1.21289 2.20682 0.97014 1.54374 13 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01470 4.94447 4.89642 1.46634 0.26236 0.58178 0.81849 8 3.40030 3.45868 3.91799 0.08852 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.01416 4.95744 4.95744 1.46634 0.26236 1.02159 0.44632 9 0.19654 3.74753 2.03540 3.72033 15 A - - , 1.38629 1.38629 1.38629 1.38629 0.03237 4.47685 3.88835 0.97131 0.47576 1.09861 0.40547 10 3.48999 4.41269 0.05662 4.38799 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.01434 4.94479 4.94479 1.46634 0.26236 1.58548 0.22922 11 3.82142 0.22831 3.06900 1.99688 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01470 4.94484 4.89679 1.46634 0.26236 1.03415 0.43932 12 2.38050 1.64467 1.84160 0.58725 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.01450 4.94978 4.91815 1.46634 0.26236 1.43807 0.27100 13 2.76073 0.38004 2.50240 1.76590 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04227 3.65285 4.16885 0.47873 0.96645 1.44567 0.26865 14 0.06856 3.99185 3.93033 3.56999 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.94113 4.94113 1.46634 0.26236 0.91986 0.50845 15 1.98717 3.39967 0.28399 2.56711 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01639 4.94941 4.69189 1.46634 0.26236 1.45029 0.26723 16 2.01913 0.79356 2.93784 1.01606 24 c - - _ 1.38629 1.38629 1.38629 1.38629 0.29348 4.94733 1.39742 1.46634 0.26236 1.51690 0.24768 17 2.89133 2.64361 3.68421 0.16455 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06528 2.92156 4.67272 1.21538 0.35183 0.06164 2.81705 18 4.11532 5.32382 0.03377 4.42182 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01418 4.95627 4.95627 1.46634 0.26236 1.19202 0.36184 19 4.19783 5.53821 0.02618 4.97931 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01418 4.95627 4.95627 1.46634 0.26236 1.19202 0.36184 20 2.14153 1.47148 1.09177 1.14784 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.31480 1.33551 4.95626 0.08037 2.56102 0.93450 0.49887 21 0.11147 4.00932 2.68827 3.94591 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03326 3.66163 4.95833 0.47873 0.96645 1.09861 0.40547 22 1.87322 2.76768 0.37041 2.37391 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01415 4.95833 4.95833 1.46634 0.26236 1.09861 0.40547 23 0.62467 1.95476 1.55239 2.19625 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.01661 4.95833 4.66146 1.46634 0.26236 1.09861 0.40547 24 2.17976 3.18443 0.20253 3.54506 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01420 4.95590 4.95330 1.46634 0.26236 0.91079 0.51451 25 4.32047 0.12065 4.15058 2.46972 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01415 4.95831 4.95831 1.46634 0.26236 1.09688 0.40633 26 1.41764 3.85403 0.35087 3.42823 43 G - - , 1.38629 1.38629 1.38629 1.38629 0.01415 4.95833 4.95833 1.46634 0.26236 1.09861 0.40547 27 2.07114 0.60066 1.99931 1.66032 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.01963 4.95833 4.38906 1.46634 0.26236 1.09861 0.40547 28 2.26643 0.67680 2.08546 1.33246 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.01423 4.95293 4.95293 1.46634 0.26236 1.32499 0.30898 29 1.97673 1.71585 1.63786 0.71893 47 u - - < 1.38629 1.38629 1.38629 1.38629 0.40823 4.06107 1.14588 0.68337 0.70302 1.32593 0.30864 30 2.01192 1.68959 0.59424 2.04261 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.12568 4.58060 2.22699 1.46634 0.26236 0.04281 3.17223 31 1.97212 0.74378 1.76728 1.53839 50 c - - < 1.38629 1.38629 1.38629 1.38629 0.01517 4.88907 4.88907 1.46634 0.26236 0.17421 1.83336 32 1.73114 1.06316 2.17663 1.01025 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01415 4.95831 4.95831 1.46634 0.26236 1.09948 0.40503 33 3.46249 2.26138 3.86807 0.17014 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01415 4.95831 4.95831 1.46634 0.26236 1.09948 0.40503 34 1.45166 1.81649 1.47482 0.98242 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01415 4.95831 4.95831 1.46634 0.26236 1.09948 0.40503 35 1.44651 1.33930 1.48729 1.28520 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01415 4.95831 4.95831 1.46634 0.26236 1.09948 0.40503 36 1.37780 1.43944 1.62862 1.15643 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01415 4.95831 4.95831 1.46634 0.26236 1.09948 0.40503 37 0.26172 3.72128 1.75540 3.40413 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01415 4.95831 4.95831 1.46634 0.26236 1.09948 0.40503 38 1.40944 1.09517 1.84361 1.33562 58 c - - _ 1.38629 1.38629 1.38629 1.38629 0.30507 1.37543 4.58537 0.61912 0.77310 1.09948 0.40503 39 1.79077 2.00289 0.63470 1.78303 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.43286 4.95513 1.06624 1.46634 0.26236 1.23971 0.34174 40 2.32470 0.65199 1.63490 1.68090 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.02150 4.54377 4.54377 1.46634 0.26236 0.37375 1.16524 41 0.82274 1.70902 1.52601 1.81812 67 a - - > 1.38629 1.38629 1.38629 1.38629 0.01572 4.85480 4.85231 1.46634 0.26236 0.17754 1.81600 42 1.59041 2.23314 0.62566 1.87042 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.01423 4.95292 4.95292 1.46634 0.26236 1.32411 0.30930 43 1.82306 2.12420 0.55201 1.94388 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.01423 4.95294 4.95294 1.46634 0.26236 0.75739 0.63279 44 0.27067 3.19752 1.94946 2.92026 70 A - - , 1.38629 1.38629 1.38629 1.38629 0.03520 4.95833 3.59112 1.46634 0.26236 1.09861 0.40547 45 2.81402 4.05314 0.12103 3.30613 71 G - - , 1.38629 1.38629 1.38629 1.38629 0.29487 1.39352 4.93757 4.17449 0.01550 0.41462 1.08054 46 2.87694 3.28037 0.15759 2.95881 162 G - - , 1.38629 1.38629 1.38629 1.38629 0.01415 4.95826 4.95826 1.46634 0.26236 1.10221 0.40367 47 1.96839 2.95258 3.43137 0.25390 163 U - - , 1.38629 1.38629 1.38629 1.38629 0.01415 4.95826 4.95826 1.46634 0.26236 1.09146 0.40906 48 2.16869 0.31382 3.63084 2.05161 164 C - - , 1.38629 1.38629 1.38629 1.38629 0.01498 4.95833 4.84863 1.46634 0.26236 1.09861 0.40547 49 1.03796 2.19816 0.82051 2.35797 165 g - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.95752 4.60574 1.46634 0.26236 1.13653 0.38703 50 1.90845 1.97216 0.62535 1.72901 166 G - - < 1.38629 1.38629 1.38629 1.38629 0.01420 4.95455 4.95455 1.46634 0.26236 1.26343 0.33224 51 2.01627 1.07703 0.85276 2.30253 167 g - - < 1.38629 1.38629 1.38629 1.38629 0.01420 4.95455 4.95455 1.46634 0.26236 1.26343 0.33224 52 1.83886 3.06781 0.32535 2.62821 168 G - - < 1.38629 1.38629 1.38629 1.38629 0.01865 4.47204 4.95455 0.97046 0.47628 0.91166 0.51393 53 3.73689 3.49955 0.06756 4.48413 170 G - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95752 4.95752 1.46634 0.26236 1.13653 0.38703 54 3.82099 3.68599 4.13131 0.06512 171 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01416 4.95752 4.95752 1.46634 0.26236 1.13653 0.38703 55 3.55493 3.43499 3.84875 0.08568 172 U - - _ 1.38629 1.38629 1.38629 1.38629 0.21226 1.69164 4.95752 4.25799 0.01425 1.13653 0.38703 56 3.67043 0.09065 4.52926 2.98765 250 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01416 4.95752 4.95752 1.46634 0.26236 1.13653 0.38703 57 2.32220 4.39307 0.13830 3.97716 251 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01877 4.46014 4.95752 0.95828 0.48378 1.13653 0.38703 58 0.01896 5.29700 4.89688 5.06715 253 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01416 4.95752 4.95752 1.46634 0.26236 1.02683 0.44339 59 1.24123 1.93997 1.63398 0.98856 254 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05121 3.22079 4.60578 0.32103 1.29244 1.09861 0.40547 60 2.76232 1.20309 2.75752 0.55662 256 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01946 4.47298 4.84566 0.97057 0.47621 0.87788 0.53728 61 4.55370 0.05414 4.66045 3.42002 258 C - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95752 4.95752 1.46634 0.26236 1.13653 0.38703 62 2.81481 0.39668 2.88318 1.55315 259 C - - > 1.38629 1.38629 1.38629 1.38629 0.02048 4.32428 4.95752 0.85356 0.55495 1.13653 0.38703 63 2.51679 0.99699 1.03022 1.64316 261 c - - > 1.38629 1.38629 1.38629 1.38629 0.01645 4.95752 4.67925 1.46634 0.26236 1.13653 0.38703 64 2.08309 0.78287 1.86698 1.33266 262 c - - > 1.38629 1.38629 1.38629 1.38629 0.01419 4.95526 4.95526 1.46634 0.26236 0.87213 0.54139 65 2.57522 1.09734 2.06571 0.76921 263 u - - > 1.38629 1.38629 1.38629 1.38629 0.01985 4.95832 4.37135 1.46634 0.26236 1.09861 0.40547 66 1.62989 1.04812 2.05977 1.12095 264 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01741 4.95266 4.58631 1.46634 0.26236 1.29979 0.31826 67 1.08333 1.75699 1.07668 1.90889 265 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01954 4.40135 4.94978 0.91755 0.50999 1.43641 0.27152 68 2.03087 1.44730 0.86610 1.54654 267 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02222 4.42692 4.60306 0.93774 0.49678 1.43641 0.27152 69 2.67776 0.37559 2.33373 1.91417 269 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01433 4.94683 4.94400 1.46634 0.26236 1.02673 0.44344 70 2.77866 1.30340 2.05876 0.61867 270 U - - ) 1.38629 1.38629 1.38629 1.38629 0.01427 4.95145 4.94871 1.46634 0.26236 0.70124 0.68512 71 3.04263 0.46259 1.83867 1.81026 271 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01415 4.95826 4.95826 1.46634 0.26236 1.09678 0.40638 72 4.10054 0.16350 2.72898 2.67387 272 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02068 4.30909 4.95828 0.84200 0.56360 1.09861 0.40547 73 0.28777 2.72562 3.23608 1.92935 274 A - - : 1.38629 1.38629 1.38629 1.38629 0.25242 4.71739 1.54110 1.46634 0.26236 1.09861 0.40547 74 4.32587 0.04795 4.77466 3.68255 275 C - - : 1.38629 1.38629 1.38629 1.38629 0.02275 4.48771 4.48771 1.46634 0.26236 3.25647 0.03929 75 4.32587 0.04795 4.77466 3.68255 276 C - - : 1.38629 1.38629 1.38629 1.38629 0.02275 4.48771 4.48771 1.46634 0.26236 3.25647 0.03929 76 0.03870 4.57018 4.19846 4.37514 277 A - - : 1.38629 1.38629 1.38629 1.38629 0.01144 4.47640 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Arg ACC bact-Arg-r2-022416 STATES 245 NODES 66 CLEN 77 W 1194 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 05:01:14 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Arg-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Arg-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Arg-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Arg-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19250 EFFN 19250.000000 CKSUM 2433690954 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.3116 0.71912 ECMLC 0.58580 -8.87092 1.71969 1600000 593683 0.002021 ECMGC 0.37644 -21.11256 -10.41722 1600000 22417 0.017844 ECMLI 0.55832 -8.58404 2.36695 1600000 542663 0.002211 ECMGI 0.38520 -17.93744 -7.71357 1600000 20532 0.019482 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1194 2533 -19.158 -20.404 -0.824 -1.201 IL 1 1 2 1 4 17 42 1198 2537 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 42 1198 2537 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 390 - A - - MR 3 2 3 5 3 18 42 1197 2536 -19.743 -0.000 -18.061 2.000 -15.368 -14.648 -14.698 D 4 2 3 5 3 15 38 1194 2533 -20.460 -15.638 -0.000 IR 5 5 3 5 3 18 42 1197 2536 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 389 - C - - MR 6 5 3 8 3 17 41 1196 2535 -19.743 -0.000 -18.061 -16.564 2.000 -17.884 -14.583 D 7 5 3 8 3 15 38 1194 2533 -20.460 -15.638 -0.000 IR 8 8 3 8 3 17 41 1196 2535 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 388 - C - - MR 9 8 3 11 3 16 40 1195 2534 -19.743 -0.002 -9.210 -16.564 2.000 -17.884 -14.583 D 10 8 3 11 3 15 38 1194 2533 -20.460 -0.005 -8.121 IR 11 11 3 11 3 14 34 1194 2534 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 387 - g - - MR 12 11 3 14 5 18 40 1194 2533 -6.997 -0.183 -19.018 -3.171 -20.122 0.742 -2.419 0.863 -1.638 D 13 11 3 14 5 12 29 1182 2521 -11.168 -6.523 -8.795 -10.226 -0.021 IR 14 14 3 14 5 14 33 1193 2532 -9.023 -0.189 -12.534 -10.702 -3.056 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 385 G C - - MP 15 14 3 19 6 23 42 1194 2533 -19.960 -19.899 -0.000 -18.675 -18.955 -19.350 -15.053 -13.555 -14.956 -0.689 -2.848 -15.352 0.054 -15.471 -15.021 3.643 -15.320 0.319 -1.119 -14.794 -13.080 -13.871 ML 16 14 3 19 6 14 34 1190 2530 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 19 36 1188 2527 -18.370 -17.099 -3.933 -17.077 -0.098 -15.291 -10.030 -0.354 -2.449 1.601 D 18 14 3 19 6 12 29 1182 2521 -15.987 -14.686 -10.483 -11.165 -11.182 -0.002 IL 19 19 5 19 6 15 35 1192 2531 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 15 36 1192 2531 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 384 C G - - MP 21 20 6 25 6 21 40 1192 2531 -19.971 -6.588 -0.017 -18.687 -9.281 -19.362 -14.265 -8.418 -14.264 0.477 -10.489 -4.598 3.213 -6.064 -14.126 1.502 -4.025 -0.989 0.482 -10.758 -1.061 -12.844 ML 22 20 6 25 6 14 33 1189 2528 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 18 35 1187 2526 -18.273 -17.002 -12.911 -16.980 -0.000 -15.194 -1.205 1.602 -0.915 -10.671 D 24 20 6 25 6 12 29 1182 2521 -15.987 -14.686 -1.872 -11.165 -11.182 -0.462 IL 25 25 5 25 6 14 35 1190 2529 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 18 39 1191 2530 -9.271 -0.004 -12.782 -10.950 -12.055 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 382 g c - - MP 27 26 6 31 6 20 38 1190 2529 -19.971 -19.910 -0.031 -15.888 -5.574 -19.361 -13.941 -2.259 -13.763 1.563 -14.803 -14.362 1.773 -14.423 -10.025 2.956 -8.200 -1.877 -0.867 -13.622 -0.287 -6.276 ML 28 26 6 31 6 14 33 1187 2526 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 17 34 1186 2525 -18.293 -17.022 -4.757 -17.000 -0.054 -15.213 -7.313 1.836 -1.240 -10.601 D 30 26 6 31 6 12 28 1179 2518 -15.529 -14.227 -10.024 -10.706 -10.723 -0.003 IL 31 31 5 31 6 14 34 1188 2528 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 15 35 1188 2527 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 381 C G - - MP 33 32 6 37 6 19 37 1188 2527 -19.946 -19.886 -0.040 -18.662 -5.210 -19.337 -9.863 -13.943 -9.441 1.108 -8.679 -15.086 3.082 -13.761 -14.100 0.936 -10.135 -3.173 1.098 -14.425 -0.456 -1.072 ML 34 32 6 37 6 14 33 1185 2524 -6.683 -7.029 -1.743 -0.671 -6.879 -4.408 -0.050 0.452 -0.750 0.100 MR 35 32 6 37 6 16 33 1184 2524 -18.484 -17.213 -6.216 -17.191 -0.020 -15.405 -11.772 -5.734 1.993 -12.479 D 36 32 6 37 6 12 28 1179 2518 -15.529 -14.227 -10.024 -10.706 -10.723 -0.003 IL 37 37 5 37 6 14 34 1187 2526 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 15 34 1186 2526 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 380 c g - - MP 39 38 6 43 6 17 35 1186 2525 -19.910 -4.858 -0.136 -18.625 -4.181 -12.979 -14.201 -9.571 -5.035 0.419 -2.908 -15.038 2.939 -13.730 -14.064 1.868 -11.531 -2.275 0.051 -9.572 0.940 -5.737 ML 40 38 6 43 6 14 33 1184 2523 -6.683 -7.029 -0.842 -1.437 -6.879 -4.408 -0.075 -0.440 -0.683 0.758 MR 41 38 6 43 6 15 32 1183 2523 -18.728 -17.457 -0.851 -17.435 -1.166 -15.649 -13.459 1.537 0.133 -12.212 D 42 38 6 43 6 12 28 1179 2518 -15.529 -14.227 -10.024 -10.706 -10.723 -0.003 IL 43 43 5 43 6 14 33 1185 2524 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 18 34 1185 2524 -10.931 -0.001 -14.442 -12.610 -13.716 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 378 c g - - MP 45 44 6 49 6 17 33 1184 2523 -3.550 -19.901 -0.137 -18.677 -7.597 -19.352 -4.386 -13.853 -14.123 0.206 -2.508 -11.478 2.970 -4.039 -14.001 0.512 -2.161 -4.878 1.825 -0.234 -0.715 -4.705 ML 46 44 6 49 6 14 31 1182 2521 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 14 30 1181 2520 -18.366 -17.095 -5.653 -17.073 -0.029 -15.287 -11.715 -7.954 1.888 -1.764 D 48 44 6 49 6 12 28 1179 2518 -15.587 -14.285 -5.728 -10.765 -10.782 -0.029 IL 49 49 5 49 6 16 32 1183 2522 -3.075 -13.625 -0.183 -15.280 -16.056 -15.716 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 14 32 1183 2522 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 377 G C - - MP 51 50 6 55 4 15 31 1182 2521 -5.657 -19.395 -0.029 -11.987 -11.519 -5.851 -13.739 1.296 -14.870 -8.831 -2.954 -14.430 -4.710 3.490 -14.424 -2.559 0.826 -11.324 -2.485 -9.485 ML 52 50 6 55 4 14 30 1181 2520 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 13 29 1180 2519 -16.423 -15.452 -13.320 -0.000 -1.043 1.813 -12.788 -11.502 D 54 50 6 55 4 12 28 1179 2518 -10.984 -10.665 -1.348 -0.723 IL 55 55 5 55 4 15 31 1183 2522 -0.550 -12.741 -1.658 -15.226 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 14 30 1181 2520 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 14 - U - - - ML 57 56 6 59 3 13 29 1180 2519 -20.098 -0.021 -6.080 -6.903 -7.057 -2.999 1.948 D 58 56 6 59 3 12 28 1179 2518 -18.567 -0.028 -5.691 IL 59 59 3 59 3 13 29 1180 2519 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - A - - - ML 60 59 3 62 2 12 28 1179 2518 -20.908 -0.000 1.693 -4.833 -0.708 -3.061 D 61 59 3 62 2 11 27 1178 2517 -13.914 -0.000 IL 62 62 3 62 2 12 28 1179 2518 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 11 27 1178 2517 [ BEGR 47 ] - - - - - - S 64 63 1 65 3 0 2 315 682 -20.274 -0.069 -4.411 IL 65 65 2 65 3 1 3 317 684 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 284 - a - - - ML 66 65 2 68 3 1 3 314 681 -20.204 -0.359 -2.183 0.800 -0.526 -0.187 -0.543 D 67 65 2 68 3 0 2 326 693 -17.283 -12.796 -0.000 IL 68 68 3 68 3 1 3 312 678 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 285 - G - - - ML 69 68 3 71 3 1 3 307 674 -2.498 -0.282 -10.925 -2.129 -3.235 1.784 -2.173 D 70 68 3 71 3 0 2 326 693 -1.059 -1.054 -4.701 IL 71 71 3 71 3 1 3 341 707 -0.073 -4.368 -10.752 0.000 0.000 0.000 0.000 [ MATL 50 ] 350 - G - - - ML 72 71 3 74 3 1 2 35 61 -20.255 -0.135 -3.484 -2.026 -7.233 1.888 -4.413 D 73 71 3 74 3 0 1 33 60 -15.457 -10.970 -0.001 IL 74 74 3 74 3 1 2 37 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 351 - U - - - ML 75 74 3 77 3 1 5 34 60 -20.120 -0.000 -18.774 -0.377 -1.473 -2.859 1.450 D 76 74 3 77 3 0 1 33 60 -18.391 -0.200 -2.951 IL 77 77 3 77 3 1 2 36 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 352 - C - - - ML 78 77 3 80 5 1 5 33 59 -19.188 -0.000 -19.003 -19.215 -20.107 -5.559 1.548 -4.540 0.016 D 79 77 3 80 5 0 1 34 61 -13.399 -9.243 -12.660 -0.003 -10.948 IL 80 80 3 80 5 1 1 33 60 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 353 376 G C - - MP 81 80 3 85 6 2 5 32 58 -20.116 -20.055 -0.000 -18.831 -19.111 -19.506 -14.079 -10.452 -13.897 1.421 -15.028 -10.946 -0.773 -14.587 -14.335 3.217 -5.705 1.420 -0.666 -11.617 -7.542 -3.231 ML 82 80 3 85 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 34 61 -15.295 -14.024 -9.933 -14.002 -0.178 -3.122 -0.984 -1.124 -7.515 1.599 D 84 80 3 85 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 32 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 32 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 354 375 C G - - MP 87 86 6 91 6 2 4 30 56 -20.116 -20.055 -0.000 -13.797 -19.111 -19.506 -14.411 -3.618 -14.411 -0.716 -8.565 -15.255 3.264 -10.441 -11.546 0.537 -8.432 0.976 0.208 -7.753 0.101 -4.483 ML 88 86 6 91 6 1 1 29 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 2 34 60 -15.119 -0.408 -9.757 -13.827 -2.030 -12.040 -7.940 -7.672 -0.807 1.774 D 90 86 6 91 6 0 0 23 49 -14.810 -13.509 -9.306 -9.988 -10.005 -0.005 IL 91 91 5 91 6 1 1 32 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 2 33 60 -1.004 -8.271 -13.694 -1.006 -12.968 0.000 0.000 0.000 0.000 [ MATP 55 ] 355 372 A U - - MP 93 92 6 97 6 2 5 28 54 -20.115 -20.055 -0.000 -18.831 -15.356 -19.506 -6.417 -5.508 -13.910 3.065 -14.933 -14.510 0.431 -14.564 -14.334 1.803 -14.587 -0.622 1.043 -11.772 -4.480 -8.528 ML 94 92 6 97 6 1 1 26 53 -7.768 -8.114 -0.529 -1.875 -7.964 -5.494 -0.162 -1.542 1.163 -0.934 MR 95 92 6 97 6 1 2 25 52 -15.119 -13.848 -9.757 -13.827 -0.002 -12.040 1.852 -8.364 -8.655 -1.378 D 96 92 6 97 6 0 0 22 49 -14.810 -13.509 -9.306 -9.988 -10.005 -0.005 IL 97 97 5 97 6 1 1 27 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 27 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 356 371 G C - - MP 99 98 6 103 6 2 4 26 52 -7.948 -20.055 -0.006 -18.831 -19.111 -19.506 -14.093 -4.288 -13.912 1.035 -15.044 -14.508 -1.160 -14.600 -14.347 3.731 -14.594 -3.023 -4.464 -10.072 -8.364 -10.796 ML 100 98 6 103 6 1 1 25 51 -6.609 -6.955 -0.903 -1.364 -6.805 -4.335 0.116 -0.761 0.560 -0.230 MR 101 98 6 103 6 1 2 24 51 -15.122 -13.851 -8.370 -13.829 -0.005 -12.043 -8.446 -1.346 1.849 -9.071 D 102 98 6 103 6 0 0 22 49 -14.810 -13.509 -9.306 -9.988 -10.005 -0.005 IL 103 103 5 103 6 1 2 25 51 -8.952 -9.215 -0.007 -10.870 -11.646 -11.306 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 25 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 358 370 G C - - MP 105 104 6 109 4 2 3 24 50 -19.346 -7.968 -0.006 -17.967 -17.354 -14.706 -18.211 -4.811 -19.312 -16.181 -13.971 -5.525 -6.218 3.992 -16.308 -10.026 -5.653 -16.520 -16.252 -16.883 ML 106 104 6 109 4 1 1 23 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 23 50 -13.145 -12.174 -10.041 -0.002 -7.820 -7.569 -1.339 1.846 D 108 104 6 109 4 0 0 22 49 -10.234 -9.916 -7.931 -0.009 IL 109 109 5 109 4 1 1 24 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 2 23 49 -7.010 -0.013 -9.710 0.000 0.000 0.000 0.000 [ MATL 58 ] 359 - U - - - ML 111 110 6 113 3 1 1 22 48 -7.731 -0.048 -5.161 -15.155 -5.954 -7.472 1.992 D 112 110 6 113 3 0 0 22 49 -15.441 -0.135 -3.489 IL 113 113 3 113 3 1 1 17 44 -7.242 -0.011 -9.942 0.000 0.000 0.000 0.000 [ MATL 59 ] 361 - U - - - ML 114 113 3 116 3 1 2 11 37 -20.232 -0.000 -18.886 -14.795 -7.292 -3.344 1.962 D 115 113 3 116 3 0 0 26 52 -16.572 -1.762 -0.504 IL 116 116 3 116 3 1 1 25 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 362 - C - - - ML 117 116 3 119 3 1 2 9 35 -20.244 -0.000 -18.898 -5.266 1.964 -5.291 -4.444 D 118 116 3 119 3 0 0 26 53 -1.319 -11.582 -0.740 IL 119 119 3 119 3 1 1 28 54 -1.002 -0.999 -11.732 0.000 0.000 0.000 0.000 [ MATL 61 ] 365 - G - - - ML 120 119 3 122 3 1 2 8 26 -20.256 -0.000 -18.910 -0.994 -5.745 1.791 -5.742 D 121 119 3 122 3 0 0 9 28 -15.330 -10.843 -0.001 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 366 - A - - - ML 123 122 3 125 3 1 2 6 25 -20.256 -0.000 -18.910 1.974 -5.747 -4.913 -5.747 D 124 122 3 125 3 0 0 8 27 -15.330 -10.843 -0.001 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 367 - A - - - ML 126 125 3 128 3 1 1 5 23 -20.256 -0.016 -6.535 1.059 -1.227 -0.078 -0.882 D 127 125 3 128 3 0 0 7 25 -15.330 -0.002 -9.722 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 368 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -6.644 -1.403 -7.370 1.850 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 5 11 1149 2489 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 188 5 11 1149 2489 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 3 615 1380 -0.210 -18.265 -2.882 -18.312 [ MATP 18 ] 16 116 G C - - MP 136 135 1 140 6 2 3 582 1347 -7.507 -19.864 -0.107 -3.940 -10.078 -19.315 -16.109 -14.525 -16.334 -4.352 -18.182 -17.377 -3.325 -16.422 -5.603 3.634 -16.250 1.727 -3.788 -8.324 -15.388 -4.848 ML 137 135 1 140 6 1 1 650 1415 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 1 2 677 1442 -18.663 -17.392 -13.301 -17.370 -0.000 -15.584 1.444 -0.161 -4.251 -1.587 D 139 135 1 140 6 0 0 665 1430 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 2 548 1313 -9.199 -9.462 -0.006 -11.117 -11.893 -11.553 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 600 1365 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 115 C G - - MP 142 141 6 146 6 2 3 546 1311 -19.826 -5.678 -0.054 -18.541 -5.860 -13.301 -16.677 -8.632 -16.084 -4.398 -14.482 -16.289 3.575 -15.375 -16.159 -1.256 -1.989 -15.009 1.685 -16.564 -2.791 -14.951 ML 143 141 6 146 6 1 1 671 1436 -16.860 -17.206 -11.921 -2.978 -17.056 -0.196 -3.221 -12.424 1.961 -11.399 MR 144 141 6 146 6 1 1 676 1441 -18.671 -17.400 -13.309 -17.379 -0.029 -5.635 -6.384 -3.084 1.221 0.622 D 145 141 6 146 6 0 0 669 1434 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 581 1346 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 3 526 1291 -0.801 -1.231 -14.771 -12.938 -14.044 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 111 U A - - MP 148 147 6 152 6 2 4 522 1287 -7.687 -19.740 -0.097 -4.077 -9.930 -19.191 -16.207 -5.579 -6.762 -3.619 -2.526 -16.119 -1.219 -15.125 -4.375 1.218 -16.049 -14.081 3.689 -16.188 -6.570 -10.423 ML 149 147 6 152 6 1 2 597 1362 -13.886 -14.232 -8.946 -0.004 -14.082 -11.611 -8.954 1.997 -9.499 -7.824 MR 150 147 6 152 6 1 1 675 1440 -18.785 -17.514 -13.423 -17.492 -8.393 -0.004 -0.403 -1.482 -11.107 1.529 D 151 147 6 152 6 0 0 675 1440 -19.893 -18.591 -14.388 -15.070 -15.088 -0.000 IL 152 152 5 152 6 1 2 506 1271 -8.898 -9.161 -0.007 -10.816 -11.592 -11.253 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 552 1317 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 21 110 C G - - MP 154 153 6 158 4 2 4 504 1269 -6.309 -9.611 -0.020 -17.562 -1.405 -14.787 -8.262 -1.222 -6.041 -6.656 3.752 -2.744 -4.552 -10.439 -7.449 -3.554 -1.109 -15.118 -0.267 -3.079 ML 155 153 6 158 4 1 2 596 1361 -2.924 -14.070 -0.204 -12.799 -0.929 1.796 -11.556 -10.359 MR 156 153 6 158 4 1 1 439 1204 -9.943 -8.972 -0.633 -1.505 -5.172 1.960 -4.600 -4.653 D 157 153 6 158 4 0 0 675 1440 -0.202 -5.746 -4.411 -3.939 IL 158 158 5 158 4 1 2 679 1445 -13.834 -0.021 -6.143 -17.003 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 2 679 1444 -0.035 -5.423 -11.037 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - A - - - ML 160 159 6 162 3 1 2 36 68 -20.249 -0.000 -18.903 1.696 -1.816 -1.138 -5.494 D 161 159 6 162 3 0 0 33 65 -15.835 -3.213 -0.165 IL 162 162 3 162 3 1 1 37 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 163 162 3 165 3 1 1 35 67 -20.251 -0.014 -6.646 0.354 -6.135 1.199 -1.278 D 164 162 3 165 3 0 0 32 65 -15.671 -2.559 -0.268 IL 165 165 3 165 3 1 1 36 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - C - - - ML 166 165 3 168 3 1 1 34 66 -20.241 -0.570 -1.616 -1.679 1.118 -2.545 0.429 D 167 165 3 168 3 0 0 32 64 -16.226 -11.739 -0.000 IL 168 168 3 168 3 1 1 35 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 169 168 3 171 3 1 2 33 66 -2.283 -0.332 -18.325 -1.128 -1.099 -6.196 1.614 D 170 168 3 171 3 0 0 32 64 -20.143 -0.075 -4.304 IL 171 171 3 171 3 1 1 34 66 -1.526 -0.700 -4.740 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - G - - - ML 172 171 3 174 3 1 1 32 64 -20.237 -0.001 -9.997 -3.055 -16.447 1.935 -4.154 D 173 171 3 174 3 0 0 29 62 -16.374 -11.887 -0.000 IL 174 174 3 174 3 1 1 33 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - G - - - ML 175 174 3 177 3 1 1 31 63 -20.236 -0.001 -10.783 -2.710 -16.530 1.944 -15.505 D 176 174 3 177 3 0 0 29 62 -16.427 -0.296 -2.432 IL 177 177 3 177 3 1 1 32 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - A - - - ML 178 177 3 180 3 1 1 30 62 -1.776 -0.847 -2.718 1.278 -1.469 -6.091 0.261 D 179 177 3 180 3 0 0 28 60 -2.496 -9.666 -0.284 IL 180 180 3 180 3 1 1 31 63 -0.817 -1.209 -17.097 0.000 0.000 0.000 0.000 [ MATL 29 ] 42 - U - - - ML 181 180 3 183 3 1 1 5 23 -20.030 -0.173 -3.145 -0.355 -2.552 -1.146 1.376 D 182 180 3 183 3 0 0 4 23 -19.008 -0.046 -5.009 IL 183 183 3 183 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 43 - A - - - ML 184 183 3 186 2 1 1 1 1 * 0.000 1.943 -5.859 -2.999 -6.282 D 185 183 3 186 2 0 0 0 0 * 0.000 IL 186 186 3 186 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 187 186 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 188 134 1 189 3 0 4 1117 2456 -20.274 -0.004 -8.658 IL 189 189 2 189 3 1 4 1118 2457 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 117 - a - - - ML 190 189 2 192 5 1 4 1117 2456 -3.808 -0.184 -4.407 -9.448 -20.122 0.739 -0.567 0.614 -2.998 D 191 189 2 192 5 0 3 1110 2449 -11.011 -0.009 -10.273 -8.648 -8.560 IL 192 192 3 192 5 1 5 1114 2453 -0.440 -1.928 -15.806 -17.639 -16.912 0.000 0.000 0.000 0.000 [ MATP 34 ] 123 283 c g - - MP 193 192 3 197 6 2 3 1110 2449 -20.063 -20.002 -0.141 -13.818 -4.276 -4.586 -8.449 -4.230 -5.076 1.213 0.068 -2.061 2.447 -1.801 -4.443 0.693 -12.056 -0.776 1.480 -1.016 -0.704 -1.241 ML 194 192 3 197 6 1 3 1183 2522 -16.600 -16.946 -11.660 -0.001 -16.796 -14.325 -12.410 2.000 -13.260 -10.828 MR 195 192 3 197 6 1 4 1104 2443 -12.133 -10.862 -0.028 -10.840 -5.974 -9.054 -5.618 -7.338 1.986 -6.369 D 196 192 3 197 6 0 0 1108 2448 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 2 1115 2455 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 2 1115 2454 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 124 282 c g - - MP 199 198 6 203 6 2 4 1100 2440 -19.924 -19.863 -0.008 -7.751 -10.682 -19.315 -14.217 -9.550 -14.218 -0.029 -3.616 -11.637 2.771 -9.401 -11.009 0.340 -14.590 -0.429 2.513 -4.658 -1.778 -3.998 ML 200 198 6 203 6 1 2 1182 2521 -16.602 -16.948 -10.461 -0.001 -16.798 -14.327 -7.390 1.997 -11.138 -10.044 MR 201 198 6 203 6 1 2 1185 2524 -17.199 -15.928 -11.837 -15.906 -0.001 -14.120 0.003 -0.003 -0.004 0.004 D 202 198 6 203 6 0 0 1089 2429 -19.501 -18.199 -13.996 -14.678 -14.696 -0.000 IL 203 203 5 203 6 1 2 1113 2452 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 2 1112 2452 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 125 281 g c - - MP 205 204 6 209 6 2 4 1098 2437 -19.916 -19.856 -0.048 -4.932 -18.912 -19.307 -13.953 -6.116 -2.926 1.770 -7.145 -14.446 1.652 -14.195 -11.958 2.650 -14.428 -1.341 1.269 -8.444 -2.351 -6.105 ML 206 204 6 209 6 1 1 1181 2520 -3.671 -17.065 -9.748 -0.120 -16.915 -14.445 -12.558 2.000 -13.424 -10.957 MR 207 204 6 209 6 1 1 1184 2523 -17.214 -15.943 -11.852 -15.921 -0.001 -14.135 -4.553 1.984 -10.950 -9.971 D 208 204 6 209 6 0 0 1089 2429 -19.501 -18.199 -0.001 -14.678 -14.696 -10.771 IL 209 209 5 209 6 1 1 1091 2430 -8.957 -9.220 -0.007 -10.875 -11.651 -11.312 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 1111 2450 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 127 280 G C - - MP 211 210 6 215 6 2 2 1089 2429 -7.793 -19.881 -0.455 -1.912 -18.938 -12.324 -14.200 -9.206 -14.174 -0.221 -0.118 -14.978 2.301 -13.817 -6.308 3.002 -14.588 -5.416 -0.669 -14.303 -0.706 -9.227 ML 212 210 6 215 6 1 1 1185 2524 -17.277 -17.623 -12.337 -0.000 -17.473 -15.002 -13.181 1.323 0.583 -11.545 MR 213 210 6 215 6 1 1 1183 2522 -17.214 -15.943 -11.852 -15.921 -6.504 -0.016 -4.553 1.984 -10.950 -9.971 D 214 210 6 215 6 0 0 1172 2511 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 215 215 5 215 6 1 1 685 2024 -8.934 -9.197 -0.007 -10.852 -11.628 -11.288 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 973 2312 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 129 279 C G - - MP 217 216 6 221 4 2 2 242 1581 -18.726 -18.933 -0.000 -12.038 -13.793 -5.361 -5.984 2.027 -12.659 -14.636 3.078 -3.548 -13.651 0.809 -14.164 -10.606 0.330 -7.436 -3.778 -1.905 ML 218 216 6 221 4 1 1 1184 2523 -0.012 -16.575 -13.142 -6.943 -0.493 -0.694 0.447 0.387 MR 219 216 6 221 4 1 1 742 2082 -8.770 -0.089 -5.666 -4.727 -4.290 -5.830 1.964 -5.023 D 220 216 6 221 4 0 0 1183 2522 -0.006 -14.919 -12.935 -8.017 IL 221 221 5 221 4 1 1 1183 2522 -0.020 -6.399 -20.361 -9.108 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 1 90 185 -0.281 -2.546 -7.463 0.000 0.000 0.000 0.000 [ MATL 39 ] 257 - C - - - ML 223 222 6 225 3 1 1 11 30 -20.185 -0.049 -4.903 -6.053 1.443 -5.560 0.315 D 224 222 6 225 3 0 0 11 29 -17.627 -13.140 -0.000 IL 225 225 3 225 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 258 - U - - - ML 226 225 3 228 3 1 1 10 29 -20.136 -0.000 -18.790 -17.286 -2.363 -18.755 1.928 D 227 225 3 228 3 0 0 9 28 -18.237 -2.846 -0.216 IL 228 228 3 228 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 259 - g - - - ML 229 228 3 231 3 1 1 9 27 -20.156 -0.000 -18.810 -0.551 -0.430 0.373 0.357 D 230 228 3 231 3 0 0 8 27 -18.021 -13.534 -0.000 IL 231 231 3 231 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 260 - c - - - ML 232 231 3 234 3 1 1 8 26 -20.156 -0.000 -18.810 0.092 0.325 -0.445 -0.079 D 233 231 3 234 3 0 0 7 26 -18.021 -13.534 -0.000 IL 234 234 3 234 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 261 - c - - - ML 235 234 3 237 3 1 1 6 25 -20.156 -0.000 -18.810 -0.554 0.584 -0.513 0.162 D 236 234 3 237 3 0 0 6 25 -18.021 -13.534 -0.000 IL 237 237 3 237 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 262 - A - - - ML 238 237 3 240 3 1 1 5 23 -20.156 -0.019 -6.288 1.663 -4.497 -0.499 -3.637 D 239 237 3 240 3 0 0 5 24 -18.021 -13.534 -0.000 IL 240 240 3 240 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 263 - A - - - ML 241 240 3 243 2 1 1 1 1 * 0.000 1.420 -1.020 -3.381 -0.443 D 242 240 3 243 2 0 0 0 0 * 0.000 IL 243 243 3 243 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 244 243 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Arg ACC bact-Arg-r2-022416 LENG 77 MAXL 1183 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 05:01:16 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Arg-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Arg-r2-022416.sto NSEQ 19250 EFFN 32.829105 CKSUM 2433690954 STATS LOCAL MSV -8.7038 0.71912 STATS LOCAL VITERBI -9.4407 0.71912 STATS LOCAL FORWARD -3.5514 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49179 1.33528 1.27373 1.46033 1.38629 1.38629 1.38629 1.38629 0.00605 5.80386 5.80386 1.46634 0.26236 0.00000 * 1 2.42510 2.49006 0.25784 2.88411 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00605 5.80386 5.80386 1.46634 0.26236 1.09861 0.40547 2 2.24833 0.66623 1.55971 1.76851 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00751 5.81146 5.40510 1.46634 0.26236 1.09861 0.40547 3 1.60561 1.67224 0.67381 2.28625 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02594 5.81095 3.78911 1.46634 0.26236 1.25315 0.33632 4 1.97508 0.73856 1.93217 1.43291 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.03180 5.79526 3.56641 1.46634 0.26236 2.03725 0.13971 5 2.26530 0.81093 1.47116 1.50463 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.05946 5.77146 2.90745 1.46634 0.26236 2.25749 0.11050 6 2.08909 0.87427 1.92208 1.16241 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.09500 2.49149 4.84900 0.18690 1.76917 2.94274 0.05416 7 1.76293 3.30474 0.40169 2.09915 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02508 3.83884 5.73045 1.18228 0.36612 3.52117 0.03001 8 4.05329 3.97322 3.35926 0.07358 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.02003 5.80343 4.08537 1.46634 0.26236 0.07168 2.67114 9 0.23504 3.88009 1.90586 3.21595 15 A - - , 1.38629 1.38629 1.38629 1.38629 0.14379 5.90302 2.03104 1.46634 0.26236 0.28918 1.38181 10 3.04091 3.68422 0.10778 3.53143 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01223 4.80220 5.53492 0.63366 0.75639 3.91277 0.02019 11 3.49098 0.44196 2.26094 1.50283 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.07726 5.78009 2.64136 1.46634 0.26236 3.91833 0.02007 12 3.20656 2.18050 1.84642 0.37292 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.01210 4.85702 5.45967 0.70708 0.67941 0.16607 1.87721 13 2.45317 0.37107 2.73471 1.83842 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.02268 3.97689 5.60367 0.26495 1.45777 0.93715 0.49716 14 0.23226 2.60298 2.18240 3.89038 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00549 5.90118 5.90118 1.46634 0.26236 1.68136 0.20594 15 1.19126 3.87104 0.56950 2.21169 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01496 5.90295 4.41336 1.46634 0.26236 1.45737 0.26507 16 2.33013 0.65698 2.94654 1.10328 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.37404 5.89603 1.17345 1.46634 0.26236 2.37294 0.09784 17 2.15931 2.12009 3.87876 0.29585 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.20420 1.71071 5.53000 0.47057 0.97989 0.06805 2.72140 18 3.40131 5.56552 0.05573 4.07161 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01390 5.90113 4.50409 1.46634 0.26236 2.20141 0.11726 19 3.30811 6.21590 0.04298 5.65988 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00607 5.89276 5.71676 1.46634 0.26236 0.32428 1.28392 20 0.54001 2.27434 3.58506 1.24947 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.55087 1.27995 1.92756 0.84177 0.56378 1.51254 0.24891 21 1.56136 2.62112 2.09440 0.52040 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06223 5.75928 2.86158 1.46634 0.26236 0.06637 2.74546 22 0.05975 4.47613 3.34351 4.48238 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.23856 1.67663 3.67961 3.73290 0.02421 2.12897 0.12665 23 2.13597 2.97021 0.30501 2.37023 110 G - - > 1.38629 1.38629 1.38629 1.38629 0.06456 5.84750 2.81958 1.46634 0.26236 0.11342 2.23283 24 0.46341 1.90781 2.20347 2.18887 111 A - - > 1.38629 1.38629 1.38629 1.38629 0.02165 3.98664 5.86026 0.93452 0.49885 2.47769 0.08767 25 1.59000 2.90297 0.39389 2.70624 115 G - - > 1.38629 1.38629 1.38629 1.38629 0.00570 5.86308 5.86308 1.46634 0.26236 0.09230 2.42846 26 2.48239 0.41909 3.29588 1.50610 116 C - - > 1.38629 1.38629 1.38629 1.38629 0.00774 5.91751 5.29444 1.46634 0.26236 1.09861 0.40547 27 0.91568 1.80697 1.00298 2.67625 117 a - - , 1.38629 1.38629 1.38629 1.38629 0.07678 2.66121 5.51053 1.34044 0.30345 0.72880 0.65872 28 1.74118 0.96625 1.78637 1.28514 123 c - - < 1.38629 1.38629 1.38629 1.38629 0.09324 5.91617 2.44961 1.46634 0.26236 0.84776 0.55927 29 2.46235 0.86948 1.96487 1.03445 124 c - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.83030 5.66198 1.46634 0.26236 3.52714 0.02983 30 1.56454 1.53799 0.90299 1.76816 125 g - - < 1.38629 1.38629 1.38629 1.38629 0.01005 4.95337 5.82976 0.69260 0.69370 0.83446 0.56936 31 2.44851 1.05242 0.84482 2.00356 127 g - - < 1.38629 1.38629 1.38629 1.38629 0.00976 5.00270 5.81215 0.69827 0.68805 0.11344 2.23268 32 1.48769 0.94772 1.73527 1.56003 129 c - - < 1.38629 1.38629 1.38629 1.38629 0.41783 1.08962 5.26262 4.28463 0.01387 1.00803 0.45403 33 3.63695 0.42422 4.17223 1.19083 257 C - - _ 1.38629 1.38629 1.38629 1.38629 0.09288 5.91486 2.45342 1.46634 0.26236 1.38200 0.28912 34 4.66996 2.91946 5.17935 0.07146 258 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00591 5.82789 5.82789 1.46634 0.26236 1.85913 0.16938 35 1.60404 1.67690 1.22314 1.14678 259 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00583 5.84085 5.84085 1.46634 0.26236 3.41498 0.03343 36 1.29258 1.24643 1.69572 1.36869 260 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00583 5.84085 5.84085 1.46634 0.26236 3.41498 0.03343 37 1.62385 1.07726 1.74312 1.24702 261 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00583 5.84085 5.84085 1.46634 0.26236 3.41498 0.03343 38 0.25473 3.79189 1.76824 3.45178 262 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00583 5.84085 5.84085 1.46634 0.26236 0.93142 0.50086 39 0.46186 2.03889 3.05262 1.64775 263 A - - _ 1.38629 1.38629 1.38629 1.38629 0.29000 1.44948 4.07191 1.78159 0.18437 2.96695 0.05283 40 1.96828 2.02286 0.73854 1.38544 279 g - - > 1.38629 1.38629 1.38629 1.38629 0.02173 5.85794 3.98228 1.46634 0.26236 2.64736 0.07347 41 2.04102 0.82343 1.09310 2.34337 280 c - - > 1.38629 1.38629 1.38629 1.38629 0.05132 5.84416 3.05492 1.46634 0.26236 0.99326 0.46262 42 1.90337 0.91048 1.56216 1.43162 281 c - - > 1.38629 1.38629 1.38629 1.38629 0.00592 5.82831 5.82173 1.46634 0.26236 2.67039 0.07174 43 1.10449 2.22402 0.86648 1.96601 282 g - - > 1.38629 1.38629 1.38629 1.38629 0.00588 5.83241 5.83241 1.46634 0.26236 0.80617 0.59161 44 1.41179 1.79531 1.05066 1.42499 283 g - - > 1.38629 1.38629 1.38629 1.38629 0.00565 5.87228 5.87228 1.46634 0.26236 2.96695 0.05283 45 0.89562 1.73234 1.54909 1.59783 284 a - - , 1.38629 1.38629 1.38629 1.38629 0.14749 5.87226 2.00757 1.46634 0.26236 0.10861 2.27380 46 2.51080 3.22620 0.20996 2.68135 285 G - - , 1.38629 1.38629 1.38629 1.38629 0.32959 1.28269 5.65847 2.98587 0.05181 0.11610 2.21083 47 2.71489 4.71169 0.10021 3.90444 350 G - - , 1.38629 1.38629 1.38629 1.38629 0.09658 5.90783 2.41521 1.46634 0.26236 1.88392 0.16487 48 1.62620 2.25229 2.90390 0.44106 351 U - - , 1.38629 1.38629 1.38629 1.38629 0.00597 5.81721 5.81721 1.46634 0.26236 0.18769 1.76536 49 3.64491 0.35268 3.94982 1.37905 352 C - - , 1.38629 1.38629 1.38629 1.38629 0.00547 5.90511 5.90511 1.46634 0.26236 2.02552 0.14148 50 1.71836 2.90446 0.35765 2.70989 353 G - - < 1.38629 1.38629 1.38629 1.38629 0.00547 5.90511 5.90511 1.46634 0.26236 2.02552 0.14148 51 2.68827 0.62085 1.56375 1.68651 354 C - - < 1.38629 1.38629 1.38629 1.38629 0.00547 5.90511 5.90511 1.46634 0.26236 2.02552 0.14148 52 0.81915 2.32275 1.12542 1.99014 355 a - - < 1.38629 1.38629 1.38629 1.38629 0.00549 5.90511 5.89752 1.46634 0.26236 2.02552 0.14148 53 1.91860 3.12926 0.24735 3.55532 356 G - - < 1.38629 1.38629 1.38629 1.38629 0.00930 5.03079 5.90509 0.69385 0.69244 2.01893 0.14248 54 4.29363 5.34586 0.02376 5.28753 358 G - - < 1.38629 1.38629 1.38629 1.38629 0.00547 5.90511 5.90511 1.46634 0.26236 2.02552 0.14148 55 4.60618 4.20453 4.92352 0.03272 359 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03681 4.94085 3.54064 0.64172 0.74736 0.38138 1.14860 56 4.31892 4.12757 3.55224 0.05985 361 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00555 5.89011 5.89011 1.46634 0.26236 0.65094 0.73722 57 4.48186 0.03977 4.62342 4.02548 362 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01327 4.56030 5.90603 0.45820 1.00081 1.97959 0.14865 58 2.06338 4.24506 0.17375 4.00981 365 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00546 5.90603 5.90603 1.46634 0.26236 1.97959 0.14865 59 0.03317 4.66236 4.34047 4.59040 366 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00546 5.90603 5.90603 1.46634 0.26236 1.97959 0.14865 60 0.73010 2.09995 1.48564 1.77597 367 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01571 5.90603 4.35359 1.46634 0.26236 0.32331 1.28644 61 4.09712 2.36180 4.59407 0.12895 368 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01067 5.04159 5.48417 0.69894 0.68739 0.35309 1.21238 62 5.16530 0.03111 5.42676 3.88625 370 C - - > 1.38629 1.38629 1.38629 1.38629 0.00542 5.91609 5.91254 1.46634 0.26236 1.26043 0.33342 63 3.78905 0.27116 2.99866 1.80159 371 C - - > 1.38629 1.38629 1.38629 1.38629 0.00546 5.91608 5.89635 1.46634 0.26236 1.26144 0.33302 64 2.05990 1.27129 2.23254 0.72401 372 u - - > 1.38629 1.38629 1.38629 1.38629 0.01375 4.51350 5.91603 0.86792 0.54443 1.24385 0.34006 65 2.14473 2.18501 0.51175 1.76622 375 G - - > 1.38629 1.38629 1.38629 1.38629 0.00541 5.91609 5.91609 1.46634 0.26236 0.83717 0.56728 66 2.89644 0.58526 2.77291 1.12289 376 C - - > 1.38629 1.38629 1.38629 1.38629 0.00636 5.91606 5.61382 1.46634 0.26236 1.09861 0.40547 67 2.21617 0.42871 3.00038 1.66149 377 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00546 5.91510 5.89874 1.46634 0.26236 1.20982 0.35418 68 1.49363 1.91932 0.70520 2.00451 378 g - - ) 1.38629 1.38629 1.38629 1.38629 0.03382 3.48870 5.91066 0.16821 1.86544 1.17880 0.36766 69 2.12342 1.38020 0.68180 2.09438 380 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00541 5.91515 5.91515 1.46634 0.26236 1.20513 0.35618 70 1.86976 2.11802 0.57279 1.82250 381 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00541 5.91515 5.91515 1.46634 0.26236 1.20074 0.35807 71 2.86326 0.67143 1.51888 1.54654 382 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01516 4.46955 5.62947 0.41886 1.07234 1.20381 0.35674 72 1.99514 1.57018 0.66694 1.94687 384 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00542 5.91427 5.91427 1.46634 0.26236 1.01272 0.45135 73 2.81112 0.43326 2.48408 1.56990 385 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01194 4.69205 5.91516 0.51113 0.91584 1.20381 0.35674 74 0.93198 2.74822 0.82824 2.25032 387 g - - : 1.38629 1.38629 1.38629 1.38629 0.05808 5.43861 2.95505 1.46634 0.26236 0.91653 0.51066 75 5.35494 0.01706 5.67606 4.73669 388 C - - : 1.38629 1.38629 1.38629 1.38629 0.00915 5.39122 5.39122 1.46634 0.26236 2.63791 0.07420 76 5.35494 0.01706 5.67606 4.73669 389 C - - : 1.38629 1.38629 1.38629 1.38629 0.00915 5.39122 5.39122 1.46634 0.26236 2.63791 0.07420 77 0.01175 5.80189 5.37362 5.51616 390 A - - : 1.38629 1.38629 1.38629 1.38629 0.00459 5.38666 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Asn ACC bact-Asn-r2-022416 STATES 242 NODES 65 CLEN 76 W 1236 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 08:14:08 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asn-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asn-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asn-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asn-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9254 EFFN 9254.000000 CKSUM 1085876629 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4386 0.71886 ECMLC 0.61272 -9.04231 1.44176 1600000 739631 0.001622 ECMGC 0.36694 -40.65717 -29.02582 1600000 28551 0.014010 ECMLI 0.57364 -9.46637 1.64575 1600000 703912 0.001705 ECMGI 0.35720 -37.69698 -26.24103 1600000 23944 0.016706 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1236 2607 -18.102 -19.347 -0.900 -1.108 IL 1 1 2 1 4 21 45 1240 2610 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 47 1240 2611 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 419 - A - - MR 3 2 3 5 3 26 50 1239 2609 -18.610 -0.000 -16.928 2.000 -14.238 -13.505 -13.569 D 4 2 3 5 3 18 41 1236 2606 -19.497 -14.675 -0.000 IR 5 5 3 5 3 22 47 1239 2610 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 418 - C - - MR 6 5 3 8 3 25 49 1238 2608 -18.610 -0.000 -16.928 -15.313 2.000 -16.505 -13.419 D 7 5 3 8 3 18 41 1236 2606 -19.497 -14.675 -0.000 IR 8 8 3 8 3 22 47 1238 2609 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 417 - C - - MR 9 8 3 11 3 24 48 1237 2607 -18.610 -0.000 -16.928 -15.313 2.000 -16.505 -13.419 D 10 8 3 11 3 18 41 1236 2606 -19.497 -0.013 -6.831 IR 11 11 3 11 3 17 40 1237 2607 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 416 - G - - MR 12 11 3 14 5 23 47 1236 2606 -7.795 -0.022 -17.960 -6.545 -19.064 -0.950 -1.491 1.636 -5.801 D 13 11 3 14 5 13 36 1225 2596 -10.814 -6.169 -1.849 -9.871 -0.500 IR 14 14 3 14 5 21 45 1236 2607 -7.205 -0.015 -10.716 -8.883 -9.989 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 414 U A - - MP 15 14 3 19 6 22 46 1235 2606 -19.057 -18.996 -0.002 -9.262 -18.053 -18.448 -4.723 -15.949 -15.318 -5.853 -5.768 -15.553 -2.539 -5.333 -12.713 1.043 -15.555 -3.690 3.759 -15.814 -4.139 -14.179 ML 16 14 3 19 6 19 43 1233 2604 -10.264 -10.610 -5.324 -0.046 -10.460 -7.989 -4.423 -4.030 -5.229 1.951 MR 17 14 3 19 6 20 43 1229 2600 -13.948 -12.677 -7.911 -12.656 -0.007 -10.869 1.866 -1.580 -6.789 -6.362 D 18 14 3 19 6 13 35 1221 2592 -14.703 -13.402 -9.199 -9.881 -9.898 -0.006 IL 19 19 5 19 6 17 40 1234 2604 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 17 40 1233 2604 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 413 C G - - MP 21 20 6 25 6 20 44 1233 2604 -19.055 -18.994 -0.006 -17.771 -18.050 -7.804 -16.007 -16.228 -6.286 -3.526 -5.162 -15.545 3.468 -14.649 -5.263 2.156 -7.519 -14.500 -3.748 -15.867 -2.032 -14.256 ML 22 20 6 25 6 20 44 1232 2603 -11.479 -11.825 -0.023 -6.234 -11.675 -9.204 0.697 1.179 -4.857 -3.632 MR 23 20 6 25 6 19 42 1228 2599 -13.946 -12.675 -2.284 -12.653 -0.333 -10.867 -2.967 -8.895 1.951 -7.934 D 24 20 6 25 6 13 35 1221 2592 -14.703 -13.402 -9.199 -9.881 -9.898 -0.006 IL 25 25 5 25 6 17 40 1232 2602 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 17 40 1232 2602 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 412 C G - - MP 27 26 6 31 6 23 45 1231 2602 -19.056 -18.995 -0.031 -5.647 -9.715 -18.446 -13.366 -13.067 -3.180 -2.487 -12.229 -14.206 3.306 -5.229 -13.223 0.690 -12.781 -3.289 1.974 -13.548 -2.718 -11.942 ML 28 26 6 31 6 16 40 1228 2599 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 18 41 1226 2597 -13.619 -12.348 -8.257 -12.327 -0.006 -10.540 -1.288 -2.002 1.698 -3.363 D 30 26 6 31 6 13 35 1221 2592 -16.016 -14.714 -10.511 -11.194 -11.211 -0.002 IL 31 31 5 31 6 17 40 1230 2600 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 17 40 1230 2600 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 411 c g - - MP 33 32 6 37 6 21 44 1229 2600 -19.025 -18.964 -0.002 -9.293 -18.020 -18.415 -13.324 -12.995 -13.320 0.705 -12.210 -14.157 2.506 -12.856 -13.188 2.431 -13.697 -4.719 1.394 -13.495 -0.970 -3.064 ML 34 32 6 37 6 18 41 1226 2597 -14.289 -14.635 -9.349 -0.003 -14.485 -12.014 -8.112 -9.885 1.998 -8.873 MR 35 32 6 37 6 17 40 1225 2596 -13.804 -12.533 -3.521 -12.511 -0.133 -10.725 1.520 -1.002 -1.496 -1.844 D 36 32 6 37 6 13 35 1221 2592 -16.016 -14.714 -10.511 -11.194 -11.211 -0.002 IL 37 37 5 37 6 17 40 1228 2599 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 17 40 1228 2598 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 410 c g - - MP 39 38 6 43 6 19 42 1227 2598 -19.024 -18.963 -0.009 -8.296 -18.019 -8.365 -13.514 -13.208 -13.491 0.683 -12.348 -14.301 2.993 -9.986 -13.362 1.833 -13.859 -6.764 -1.933 -9.649 1.378 -12.083 ML 40 38 6 43 6 17 40 1225 2596 -14.397 -14.743 -3.765 -0.111 -14.593 -12.122 -9.604 1.998 -10.192 -8.394 MR 41 38 6 43 6 16 39 1224 2595 -13.677 -12.406 -6.833 -12.384 -0.014 -10.598 -6.650 -0.383 1.685 -7.111 D 42 38 6 43 6 13 35 1221 2592 -16.016 -14.714 -10.511 -11.194 -11.211 -0.002 IL 43 43 5 43 6 17 40 1226 2597 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 17 40 1226 2597 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 409 g c - - MP 45 44 6 49 6 17 40 1225 2596 -6.942 -18.956 -0.012 -17.733 -18.013 -18.408 -12.974 -6.395 -9.538 1.313 -13.224 -5.421 0.721 -6.848 -13.151 2.629 -5.459 -3.944 1.803 -4.606 1.004 -6.067 ML 46 44 6 49 6 16 39 1224 2595 -14.497 -14.843 -0.003 -9.252 -14.693 -12.222 1.998 -9.784 -9.020 -9.128 MR 47 44 6 49 6 15 38 1223 2594 -13.669 -12.398 -1.789 -12.376 -0.495 -10.590 -0.721 -0.658 1.320 -1.930 D 48 44 6 49 6 13 35 1221 2592 -16.498 -15.196 -1.218 -11.675 -11.692 -0.812 IL 49 49 5 49 6 16 39 1224 2595 -8.861 -9.124 -0.008 -10.779 -11.555 -11.215 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 16 38 1224 2595 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 408 G C - - MP 51 50 6 55 4 15 38 1223 2594 -18.291 -18.498 -0.003 -9.082 -13.117 -11.746 -12.941 1.446 -14.075 -13.527 -1.306 -13.624 -3.187 3.324 -13.606 -1.228 1.213 -9.138 -11.150 -11.903 ML 52 50 6 55 4 14 37 1222 2593 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 14 36 1222 2592 -11.206 -10.235 -0.591 -1.577 0.412 0.749 -4.623 -0.077 D 54 50 6 55 4 12 35 1220 2591 -11.111 -10.792 -6.060 -0.023 IL 55 55 5 55 4 15 37 1223 2593 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 14 37 1223 2593 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - U - - - ML 57 56 6 59 3 13 36 1221 2592 -19.203 -0.001 -10.917 -4.256 -5.379 -5.055 1.961 D 58 56 6 59 3 12 35 1220 2591 -13.943 -0.005 -8.335 IL 59 59 3 59 3 13 36 1222 2592 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - A - - - ML 60 59 3 62 2 12 35 1220 2591 -19.873 -0.000 1.938 -4.187 -3.350 -5.965 D 61 59 3 62 2 11 34 1219 2590 -9.204 -0.002 IL 62 62 3 62 2 12 35 1220 2591 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 11 34 1219 2590 [ BEGR 46 ] - - - - - - S 64 63 1 65 3 0 3 911 2030 -19.217 -0.000 -17.871 IL 65 65 2 65 3 1 1 909 2028 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 288 - A - - - ML 66 65 2 68 3 1 3 911 2030 -19.217 -0.005 -8.317 1.479 -0.881 -1.570 -1.588 D 67 65 2 68 3 0 0 842 1961 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 906 2025 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 289 - G - - - ML 69 68 3 71 3 1 4 910 2030 -2.161 -0.365 -17.867 -4.022 -4.134 1.657 -0.460 D 70 68 3 71 3 0 0 480 1600 -12.338 -0.014 -6.729 IL 71 71 3 71 3 1 8 1000 2120 -0.024 -5.937 -20.383 0.000 0.000 0.000 0.000 [ MATL 49 ] 387 - G - - - ML 72 71 3 74 3 1 2 26 45 -19.217 -0.000 -14.542 -5.666 -15.501 1.979 -4.702 D 73 71 3 74 3 0 0 31 50 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 388 - U - - - ML 75 74 3 77 3 1 3 25 44 -19.217 -0.000 -17.871 -1.070 -0.680 -4.836 1.518 D 76 74 3 77 3 0 0 30 48 -7.063 -0.672 -1.455 IL 77 77 3 77 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 389 - C - - - ML 78 77 3 80 5 1 3 24 43 -18.150 -0.000 -15.878 -18.178 -19.069 -6.482 1.899 -5.465 -2.076 D 79 77 3 80 5 0 0 25 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 80 80 3 80 5 1 1 27 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 390 407 G C - - MP 81 80 3 85 6 2 3 23 42 -19.078 -19.018 -0.001 -10.313 -18.074 -18.469 -13.413 -9.365 -13.260 2.067 -14.430 -13.889 1.446 -13.904 -6.207 3.145 -6.314 -2.470 -4.933 -13.152 -11.508 -12.202 ML 82 80 3 85 6 1 1 24 41 -6.476 -6.822 -1.536 -0.808 -6.672 -4.201 0.749 -0.648 -0.363 -0.146 MR 83 80 3 85 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 391 406 C G - - MP 87 86 6 91 6 2 3 21 40 -19.077 -19.017 -0.002 -9.346 -18.073 -18.468 -13.373 -5.510 -7.447 -1.568 -7.439 -5.284 3.411 -12.893 -11.114 1.540 -13.745 -2.839 0.861 -13.554 -4.903 -3.885 ML 88 86 6 91 6 1 1 21 39 -9.786 -10.132 -0.099 -4.119 -9.982 -7.511 1.904 -3.402 -3.591 -3.643 MR 89 86 6 91 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 392 405 c g - - MP 93 92 6 97 6 2 2 19 38 -19.076 -19.016 -0.000 -17.792 -18.072 -18.467 -13.378 -3.789 -8.945 2.255 -12.243 -14.221 2.461 -6.269 -13.236 1.046 -13.749 -10.646 1.750 -13.561 -2.292 -10.641 ML 94 92 6 97 6 1 1 21 40 -10.683 -11.029 -0.052 -5.016 -10.879 -8.409 -5.010 -4.569 -5.835 1.967 MR 95 92 6 97 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 393 404 G C - - MP 99 98 6 103 6 2 2 17 35 -7.968 -19.018 -0.006 -17.794 -18.074 -18.469 -16.922 -8.302 -18.645 -1.747 -17.788 -14.825 -1.100 -18.141 -15.012 3.922 -15.207 -11.593 -4.944 -4.870 -8.108 -17.629 ML 100 98 6 103 6 1 1 24 42 -6.476 -6.822 -1.536 -0.808 -6.672 -4.201 0.224 -0.653 0.374 -0.152 MR 101 98 6 103 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 18 37 -7.913 -8.176 -0.015 -9.831 -10.607 -10.268 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 395 403 G C - - MP 105 104 6 109 4 2 2 15 33 -18.308 -18.515 -0.000 -16.929 -17.056 -5.482 -19.616 -11.128 -18.664 -14.782 -12.937 -18.965 -5.168 3.991 -15.192 -5.539 -13.308 -5.536 -15.397 -18.847 ML 106 104 6 109 4 1 1 23 42 -3.929 -4.112 -0.440 -2.841 0.224 -0.653 0.374 -0.152 MR 107 104 6 109 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 396 - U - - - ML 111 110 6 113 3 1 1 12 30 -19.217 -0.000 -17.871 -6.780 -15.074 -17.862 1.997 D 112 110 6 113 3 0 0 19 37 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 397 - U - - - ML 114 113 3 116 3 1 1 11 29 -19.217 -0.000 -17.871 -13.831 -7.312 -5.572 1.990 D 115 113 3 116 3 0 0 18 36 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 398 - C - - - ML 117 116 3 119 3 1 1 10 28 -19.217 -0.000 -15.591 -6.100 1.978 -6.101 -5.028 D 118 116 3 119 3 0 0 16 35 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 399 - G - - - ML 120 119 3 122 3 1 1 8 27 -19.217 -0.000 -17.871 -2.722 -5.740 1.930 -5.744 D 121 119 3 122 3 0 0 15 34 -6.621 -1.017 -1.013 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 400 - A - - - ML 123 122 3 125 3 1 1 7 25 -19.217 -0.000 -17.871 1.977 -6.098 -4.825 -6.097 D 124 122 3 125 3 0 0 15 33 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 401 - G - - - ML 126 125 3 128 3 1 1 5 24 -19.217 -0.000 -17.871 0.162 -5.554 1.354 -1.719 D 127 125 3 128 3 0 0 13 32 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 402 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -5.669 0.176 -7.327 1.508 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 2 12 1145 2516 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 185 2 12 1145 2516 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 3 27 41 -0.031 -17.209 -5.565 -17.256 [ MATP 18 ] 11 35 G C - - MP 136 135 1 140 6 2 5 27 41 -19.048 -18.987 -0.006 -8.597 -9.126 -18.438 -17.007 -11.774 -19.463 -4.154 -18.602 -6.094 -3.438 -18.888 -6.922 3.955 -12.786 -2.616 -2.642 -12.079 -15.342 -18.675 ML 137 135 1 140 6 1 1 26 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 1 2 23 37 -14.929 -13.658 -9.566 -13.636 -0.003 -11.849 -7.977 -7.837 1.778 -0.833 D 139 135 1 140 6 0 0 24 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 27 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 27 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 34 C G - - MP 142 141 6 146 6 2 6 25 39 -19.041 -3.456 -0.141 -9.066 -18.037 -18.432 -4.427 -16.382 -15.417 -12.619 -11.815 -15.561 3.494 -14.683 -6.539 -12.590 -5.058 -14.786 2.212 -15.934 -6.059 -14.323 ML 143 141 6 146 6 1 1 22 36 -11.366 -11.712 -6.426 -1.182 -11.562 -0.871 1.987 -6.748 -6.103 -6.288 MR 144 141 6 146 6 1 1 22 36 -15.043 -13.772 -4.324 -13.750 -0.400 -2.381 -3.156 -10.059 1.958 -9.054 D 145 141 6 146 6 0 0 21 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 24 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 3 24 38 -11.464 -0.001 -14.975 -13.143 -14.248 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 32 U A - - MP 148 147 6 152 6 2 6 23 37 -19.040 -4.720 -0.056 -17.756 -18.036 -18.431 -8.453 -16.379 -15.416 -2.598 -8.424 -2.957 -2.167 -14.682 -8.449 -3.340 -15.640 -14.780 3.942 -15.933 -8.740 -14.322 ML 149 147 6 152 6 1 2 21 35 -11.571 -11.917 -1.397 -0.695 -11.767 -9.297 -6.261 1.983 -6.712 -5.360 MR 150 147 6 152 6 1 2 20 35 -14.646 -13.375 -4.725 -13.353 -0.056 -11.567 -2.325 0.800 1.030 -5.862 D 151 147 6 152 6 0 0 17 32 -15.690 -14.388 -10.185 -10.868 -10.885 -0.003 IL 152 152 5 152 6 1 1 22 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 3 22 36 -10.202 -0.002 -13.713 -11.881 -12.987 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 30 C G - - MP 154 153 6 158 4 2 4 21 35 -3.400 -18.480 -0.144 -16.894 -16.102 -16.383 -8.451 -12.620 -6.105 -6.202 3.963 -14.685 -2.678 -6.386 -5.913 -14.788 -10.502 -15.936 -2.878 -4.282 ML 155 153 6 158 4 1 1 19 33 -8.008 -8.190 -0.023 -6.920 -5.336 -4.866 -6.173 1.973 MR 156 153 6 158 4 1 1 19 33 -12.618 -11.647 -1.102 -0.906 -7.855 1.715 -0.502 -7.272 D 157 153 6 158 4 0 0 17 32 -11.113 -10.794 -8.810 -0.005 IL 158 158 5 158 4 1 3 20 34 -11.741 -0.001 -11.172 -14.910 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 3 19 33 -10.477 -0.001 -13.177 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - A - - - ML 160 159 6 162 3 1 3 18 32 -19.196 -0.000 -17.850 1.969 -6.942 -10.296 -3.695 D 161 159 6 162 3 0 0 17 32 -14.556 -0.004 -8.351 IL 162 162 3 162 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - G - - - ML 163 162 3 165 3 1 2 17 31 -19.217 -0.000 -17.871 -0.233 -7.295 1.646 -6.141 D 164 162 3 165 3 0 0 18 37 -6.603 -1.036 -0.994 IL 165 165 3 165 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - U - - - ML 166 165 3 168 3 1 1 16 30 -19.217 -0.867 -1.147 -2.957 0.539 -7.161 1.270 D 167 165 3 168 3 0 0 18 36 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - C - - - ML 169 168 3 171 3 1 1 15 30 -4.841 -0.051 -17.005 -2.766 1.190 -6.231 0.640 D 170 168 3 171 3 0 0 10 27 -19.489 -0.023 -5.964 IL 171 171 3 171 3 1 1 17 31 -1.880 -0.458 -11.368 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - G - - - ML 172 171 3 174 3 1 1 10 26 -19.207 -0.000 -17.861 -5.560 -15.499 1.989 -6.763 D 173 171 3 174 3 0 0 11 29 -13.528 -9.041 -0.003 IL 174 174 3 174 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - G - - - ML 175 174 3 177 3 1 1 9 25 -19.207 -0.000 -17.861 -6.247 -4.690 1.981 -14.472 D 176 174 3 177 3 0 0 9 28 -13.528 -5.614 -0.030 IL 177 177 3 177 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - U - - - ML 178 177 3 180 3 1 1 8 15 -4.310 -0.075 -17.861 -7.230 0.273 -7.571 1.475 D 179 177 3 180 3 0 0 4 11 -13.501 -9.014 -0.003 IL 180 180 3 180 3 1 1 8 15 -3.730 -0.113 -12.407 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.806 -5.449 -1.135 -5.292 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 185 134 1 186 3 0 0 1129 2500 -7.669 -0.012 -8.098 IL 186 186 2 186 3 1 1 1130 2501 -6.292 -0.021 -8.992 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - g - - - ML 187 186 2 189 5 1 1 1129 2500 -18.145 -0.000 -17.960 -18.172 -19.064 0.625 -7.433 0.697 -0.267 D 188 186 2 189 5 0 0 1137 2508 -10.523 -0.401 -9.784 -2.075 -8.072 IL 189 189 3 189 5 1 1 1131 2502 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 287 c g - - MP 190 189 3 194 6 2 2 1128 2499 -5.506 -19.016 -0.032 -17.793 -18.073 -18.468 -4.288 0.848 -4.455 1.509 -3.216 -11.467 2.180 -1.819 -5.656 -0.210 -11.251 1.330 -0.751 1.200 -5.776 -5.245 ML 191 189 3 194 6 1 1 1130 2501 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 3 194 6 1 1 1161 2532 -10.459 -9.188 -5.096 -9.166 -0.058 -7.379 -3.939 -3.588 -4.735 1.931 D 193 189 3 194 6 0 0 1149 2521 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 1159 2530 -10.345 -10.608 -3.316 -12.263 -0.155 -12.699 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 1131 2502 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 286 C G - - MP 196 195 6 200 6 2 2 1125 2496 -19.048 -7.914 -0.006 -17.764 -18.044 -18.439 -13.744 -13.467 -13.698 -0.677 -12.515 -14.470 3.186 -13.194 -13.574 -0.960 -11.635 -7.557 2.493 -13.907 -2.977 -12.300 ML 197 195 6 200 6 1 1 1127 2498 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 1161 2532 -14.900 -13.629 -9.538 -13.608 -0.064 -4.569 -0.044 -0.075 -0.077 0.179 D 199 195 6 200 6 0 0 1152 2523 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 1128 2499 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 1124 2495 -7.067 -0.017 -10.578 -8.746 -9.852 0.000 0.000 0.000 0.000 [ MATP 35 ] 41 284 c g - - MP 202 201 6 206 6 2 2 1123 2494 -19.048 -18.988 -0.000 -17.764 -18.044 -18.439 -16.090 -16.340 -15.418 -2.546 -13.773 -6.116 2.859 -14.686 -15.515 2.779 -15.639 -14.704 0.759 -15.928 -10.609 -14.320 ML 203 201 6 206 6 1 1 1122 2493 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 1160 2531 -14.839 -13.568 -9.477 -13.546 -0.003 -11.760 0.015 -0.016 -0.018 0.018 D 205 201 6 206 6 0 0 1156 2527 -13.029 -11.728 -7.525 -8.207 -8.224 -0.018 IL 206 206 5 206 6 1 1 1126 2497 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 1127 2498 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 42 283 G C - - MP 208 207 6 212 6 2 2 1121 2492 -19.048 -3.540 -0.132 -9.453 -18.044 -18.439 -16.928 -13.607 -19.034 -3.924 -18.586 -14.786 -2.223 -18.580 -5.671 3.972 -15.170 -7.072 -13.264 -15.247 -15.346 -18.022 ML 209 207 6 212 6 1 1 1114 2485 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 6 1 1 1159 2530 -14.839 -13.568 -9.477 -13.546 -0.003 -11.760 0.015 -0.016 -0.018 0.018 D 211 207 6 212 6 0 0 1156 2527 -13.029 -11.728 -7.525 -8.207 -8.224 -0.018 IL 212 212 5 212 6 1 1 1123 2494 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 1120 2491 -11.386 -0.001 -14.897 -13.065 -14.171 0.000 0.000 0.000 0.000 [ MATP 37 ] 43 281 A U - - MP 214 213 6 218 4 2 2 1119 2490 -2.745 -18.483 -0.233 -16.897 -15.428 -14.307 -15.364 3.156 -14.983 -16.583 -3.543 -15.070 -15.075 2.794 -15.557 -11.685 -4.310 -16.263 -6.328 -14.070 ML 215 213 6 218 4 1 1 1096 2468 -7.650 -7.833 -0.029 -6.562 1.975 -5.748 -5.166 -5.406 MR 216 213 6 218 4 1 1 1158 2529 -12.864 -11.893 -9.760 -0.002 -10.564 -9.350 -11.932 1.999 D 217 213 6 218 4 0 0 1157 2528 -8.458 -8.139 -6.155 -0.030 IL 218 218 5 218 4 1 1 1188 2559 -0.322 -2.322 -14.152 -17.889 0.000 0.000 0.000 0.000 IR 219 219 6 219 3 1 1 1183 2554 -0.067 -14.948 -4.459 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - C - - - ML 220 219 6 222 3 1 1 1093 2464 -18.955 -0.000 -17.609 -15.102 1.992 -15.765 -5.523 D 221 219 6 222 3 0 0 1157 2528 -18.051 -13.564 -0.000 IL 222 222 3 222 3 1 1 1102 2473 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - U - - - ML 223 222 3 225 3 1 1 1092 2463 -18.955 -0.000 -17.609 -13.691 -7.056 -6.994 1.994 D 224 222 3 225 3 0 0 1157 2528 -0.192 -13.564 -3.006 IL 225 225 3 225 3 1 1 1167 2538 -0.030 -5.584 -19.418 0.000 0.000 0.000 0.000 [ MATL 40 ] 99 - u - - - ML 226 225 3 228 3 1 1 1091 2462 -2.065 -0.394 -17.841 -1.431 -0.466 -0.024 0.942 D 227 225 3 228 3 0 0 608 1979 -15.046 -10.559 -0.001 IL 228 228 3 228 3 1 1 1143 2514 -0.029 -5.654 -20.169 0.000 0.000 0.000 0.000 [ MATL 41 ] 180 - U - - - ML 229 228 3 231 3 1 1 1060 2431 -19.187 -0.000 -17.841 -1.364 -1.433 -1.433 1.522 D 230 228 3 231 3 0 0 578 1950 -15.046 -10.559 -0.001 IL 231 231 3 231 3 1 1 1054 2425 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 181 - U - - - ML 232 231 3 234 3 1 1 1059 2430 -19.187 -0.000 -17.841 -1.432 -0.050 -1.433 1.197 D 233 231 3 234 3 0 0 535 1907 -15.046 -10.559 -0.001 IL 234 234 3 234 3 1 1 1053 2424 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 182 - A - - - ML 235 234 3 237 3 1 1 1058 2429 -2.796 -0.224 -17.841 1.862 -1.506 -6.240 -13.313 D 236 234 3 237 3 0 0 425 1796 -15.046 -10.559 -0.001 IL 237 237 3 237 3 1 1 1201 2573 -0.019 -6.228 -20.013 0.000 0.000 0.000 0.000 [ MATL 44 ] 258 - A - - - ML 238 237 3 240 2 1 1 1 1 * 0.000 1.992 -5.592 -14.399 -14.428 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Asn ACC bact-Asn-r2-022416 LENG 76 MAXL 1162 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 08:14:09 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asn-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asn-r2-022416.sto NSEQ 9254 EFFN 6.323329 CKSUM 1085876629 STATS LOCAL MSV -8.5803 0.71886 STATS LOCAL VITERBI -9.3237 0.71886 STATS LOCAL FORWARD -3.6979 0.71886 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.48849 1.33634 1.28131 1.45327 1.38629 1.38629 1.38629 1.38629 0.01921 4.65488 4.65488 1.46634 0.26236 0.00000 * 1 2.42696 1.66877 1.73773 0.60277 1 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01921 4.65488 4.65488 1.46634 0.26236 1.09861 0.40547 2 2.46912 0.70599 1.40349 1.73738 2 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02282 4.65489 4.33941 1.46634 0.26236 1.09861 0.40547 3 2.28154 0.82316 1.80195 1.22467 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02020 4.65310 4.55923 1.46634 0.26236 1.21518 0.35191 4 1.92052 1.17499 1.24464 1.36022 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01927 4.65217 4.65217 1.46634 0.26236 1.24396 0.34001 5 1.98380 0.95901 1.50503 1.35802 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02165 4.65282 4.43296 1.46634 0.26236 1.23974 0.34173 6 1.69948 1.62974 1.09669 1.24735 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02572 4.14543 4.65052 0.95202 0.48770 0.92938 0.50219 7 1.63529 2.38758 0.56524 1.93084 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02067 4.65610 4.51383 1.46634 0.26236 1.17740 0.36828 8 2.85752 2.86240 3.36426 0.16150 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01957 4.65804 4.61612 1.46634 0.26236 0.88781 0.53028 9 0.13346 3.31014 2.98670 3.27084 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.03624 4.66530 3.64306 1.46634 0.26236 1.07086 0.41964 10 2.97091 3.67492 0.11149 3.54416 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02077 4.64881 4.51134 1.46634 0.26236 1.56432 0.23475 11 2.76347 0.59891 2.52300 1.17994 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02053 4.64740 4.53464 1.46634 0.26236 1.50467 0.25115 12 3.89675 2.82363 3.79528 0.10778 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.01936 4.64715 4.64715 1.46634 0.26236 1.54797 0.23912 13 4.28673 0.07094 4.01346 3.30607 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.09848 2.47456 4.64768 0.21390 1.64728 1.08390 0.41290 14 0.08172 3.82906 3.70405 3.43842 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65394 4.65394 1.46634 0.26236 0.63832 0.75116 15 1.56736 3.34145 0.34873 2.98713 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01900 4.66569 4.66569 1.46634 0.26236 1.09775 0.40590 16 2.22760 1.16064 2.93726 0.64261 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.47307 4.66568 1.00102 1.46634 0.26236 1.09861 0.40547 17 1.90791 0.88167 2.55701 1.02170 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05442 3.26226 4.22237 0.77705 0.61574 0.06562 2.75648 18 3.62791 4.70454 0.05231 4.17758 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01912 4.65997 4.65997 1.46634 0.26236 1.28282 0.32470 19 3.43562 4.08449 0.07024 3.97422 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01912 4.65997 4.65997 1.46634 0.26236 1.27158 0.32904 20 2.59919 1.34014 3.15796 0.47587 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06067 3.00786 4.66008 0.39570 1.11843 1.27968 0.32590 21 0.24469 3.17837 2.09244 2.95620 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10005 2.48696 4.41930 0.21390 1.64728 1.07708 0.41641 22 3.48544 4.17086 0.06641 4.00765 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.05058 3.24491 4.57036 0.43069 1.05000 1.29285 0.32088 23 0.12474 3.78709 2.68466 3.63546 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.09425 2.51997 4.65875 0.22094 1.61831 0.89695 0.52393 24 1.28586 2.70912 0.54782 2.54102 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01904 4.66369 4.66369 1.46634 0.26236 0.97425 0.47397 25 3.56727 0.14739 3.39925 2.58478 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.02595 4.31928 4.39791 1.08937 0.41012 1.09861 0.40547 26 1.05791 2.39630 1.12091 1.44485 37 a - - , 1.38629 1.38629 1.38629 1.38629 0.01906 4.66280 4.66280 1.46634 0.26236 0.98603 0.46690 27 1.41504 1.35906 1.47019 1.30823 38 u - - < 1.38629 1.38629 1.38629 1.38629 0.02077 4.49791 4.66501 1.26918 0.32998 1.12277 0.39360 28 2.34431 0.80465 2.14281 1.08024 40 c - - < 1.38629 1.38629 1.38629 1.38629 0.03520 4.66501 3.68231 1.46634 0.26236 1.12277 0.39360 29 2.32321 1.03196 1.06885 1.59785 41 c - - < 1.38629 1.38629 1.38629 1.38629 0.01933 4.64914 4.64914 1.46634 0.26236 1.55709 0.23667 30 3.12298 3.73157 0.09106 3.96053 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.01933 4.64914 4.64914 1.46634 0.26236 1.55709 0.23667 31 0.90643 2.95578 0.72479 2.82058 43 g - - < 1.38629 1.38629 1.38629 1.38629 0.14704 2.06226 4.64916 1.39017 0.28639 1.55709 0.23667 32 3.92386 0.07406 4.42752 3.22706 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01933 4.64914 4.64914 1.46634 0.26236 1.55709 0.23667 33 3.22246 3.08457 3.69162 0.11714 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.14704 2.06226 4.64916 3.80697 0.02247 1.55709 0.23667 34 1.61064 1.64861 1.56720 0.91806 99 u - - _ 1.38629 1.38629 1.38629 1.38629 0.23293 1.61838 4.64914 3.89185 0.02062 1.55709 0.23667 35 1.79421 1.97602 2.15366 0.54634 180 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01933 4.64914 4.64914 1.46634 0.26236 1.55709 0.23667 36 1.70928 1.47810 2.08033 0.76348 181 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01933 4.64914 4.64914 1.46634 0.26236 1.55709 0.23667 37 0.19732 2.49372 3.11262 2.95686 182 A - - _ 1.38629 1.38629 1.38629 1.38629 0.14252 2.09348 4.64914 4.27113 0.01406 1.55709 0.23667 38 0.05577 4.09871 3.91415 4.03464 258 A - - _ 1.38629 1.38629 1.38629 1.38629 0.14834 2.06226 4.53811 3.05294 0.04837 0.57440 0.82793 39 3.06404 0.79787 2.76648 0.82068 281 c - - > 1.38629 1.38629 1.38629 1.38629 0.08967 2.57254 4.66391 0.23101 1.57857 1.04922 0.43111 40 4.07736 0.10954 3.61158 2.81692 283 C - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66501 4.66501 1.46634 0.26236 1.12277 0.39360 41 1.77542 1.13340 0.95606 2.08550 284 g - - > 1.38629 1.38629 1.38629 1.38629 0.02231 4.37075 4.66501 1.13875 0.38598 1.05199 0.42962 42 1.20618 2.29779 0.72860 2.14050 286 g - - > 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 43 1.65034 1.48692 1.22477 1.24437 287 g - - > 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 44 0.58104 1.89582 2.09862 1.78460 288 A - - , 1.38629 1.38629 1.38629 1.38629 0.02154 4.66570 4.43151 1.46634 0.26236 1.09861 0.40547 45 2.26177 2.81566 0.39411 1.82207 289 G - - , 1.38629 1.38629 1.38629 1.38629 0.21826 1.67854 4.66321 4.08668 0.01694 0.94873 0.48977 46 3.52686 4.53352 0.06292 3.87093 387 G - - , 1.38629 1.38629 1.38629 1.38629 0.01904 4.66570 4.66252 1.46634 0.26236 1.09861 0.40547 47 1.83894 1.76024 2.71786 0.50585 388 U - - , 1.38629 1.38629 1.38629 1.38629 0.01901 4.66567 4.66567 1.46634 0.26236 1.09650 0.40652 48 3.26008 0.16557 3.74319 2.40215 389 C - - , 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 49 1.48286 1.93367 0.62134 2.39499 390 G - - < 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 50 2.24631 0.79819 1.58142 1.43387 391 c - - < 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 51 1.52697 1.15602 1.63722 1.29626 392 c - - < 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 52 2.58677 3.09064 0.17340 3.25815 393 G - - < 1.38629 1.38629 1.38629 1.38629 0.02224 4.37558 4.66570 1.14276 0.38410 1.09861 0.40547 53 3.27274 4.22536 0.07136 4.11332 395 G - - < 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 54 3.55018 3.43976 4.13825 0.07985 396 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 55 3.21739 3.09712 3.60718 0.11920 397 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 56 3.65624 0.09001 4.07317 3.14127 398 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01902 4.66570 4.66434 1.46634 0.26236 1.09861 0.40547 57 2.75924 3.85140 0.12131 3.51817 399 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01901 4.66569 4.66569 1.46634 0.26236 1.09771 0.40592 58 0.07683 3.89012 3.51321 3.74202 400 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 59 1.31638 2.72809 0.62054 2.04875 401 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 1.09861 0.40547 60 2.55906 1.40349 3.13003 0.45702 402 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01900 4.66569 4.66569 1.46634 0.26236 1.09861 0.40547 61 4.23816 0.08622 4.08936 2.96762 403 C - - > 1.38629 1.38629 1.38629 1.38629 0.01900 4.66569 4.66569 1.46634 0.26236 1.09861 0.40547 62 3.51170 0.19720 2.96131 2.32919 404 C - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.66569 4.54426 1.46634 0.26236 1.09861 0.40547 63 1.47024 1.75094 1.03863 1.41642 405 g - - > 1.38629 1.38629 1.38629 1.38629 0.01966 4.66447 4.60065 1.46634 0.26236 1.01932 0.44760 64 1.62368 1.70157 0.72409 1.99756 406 g - - > 1.38629 1.38629 1.38629 1.38629 0.01902 4.66507 4.66507 1.46634 0.26236 1.05652 0.42719 65 2.64403 0.69972 1.82377 1.30643 407 c - - > 1.38629 1.38629 1.38629 1.38629 0.02142 4.66340 4.44353 1.46634 0.26236 1.09861 0.40547 66 2.07025 0.65273 2.22000 1.40807 408 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04135 4.66107 3.47205 1.46634 0.26236 1.17740 0.36828 67 1.55732 1.18044 1.31286 1.54596 409 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02079 4.63923 4.51780 1.46634 0.26236 1.30218 0.31737 68 1.85313 1.60248 0.73583 1.81556 410 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01945 4.64285 4.64285 1.46634 0.26236 1.51856 0.24721 69 1.57769 1.34008 1.03661 1.73121 411 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01942 4.64409 4.64409 1.46634 0.26236 0.63814 0.75135 70 1.38295 1.95068 0.73433 2.06232 412 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02044 4.65898 4.53245 1.46634 0.26236 0.89971 0.52204 71 1.99323 1.48425 0.63302 2.24350 413 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01909 4.66121 4.66121 1.46634 0.26236 1.01606 0.44944 72 0.67020 1.86414 1.51265 2.18002 414 A - - ) 1.38629 1.38629 1.38629 1.38629 0.02271 4.34206 4.66249 1.11370 0.39801 1.09861 0.40547 73 1.78084 2.36945 0.41514 2.55457 416 G - - : 1.38629 1.38629 1.38629 1.38629 0.03024 4.20672 4.20672 1.46634 0.26236 1.09861 0.40547 74 3.38134 0.11940 3.94509 2.82690 417 C - - : 1.38629 1.38629 1.38629 1.38629 0.03024 4.20672 4.20672 1.46634 0.26236 1.09861 0.40547 75 3.38134 0.11940 3.94509 2.82690 418 C - - : 1.38629 1.38629 1.38629 1.38629 0.03024 4.20672 4.20672 1.46634 0.26236 1.09861 0.40547 76 0.09627 3.68496 3.36792 3.43502 419 A - - : 1.38629 1.38629 1.38629 1.38629 0.01524 4.19171 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Asp ACC bact-Asp-r2-022416 STATES 245 NODES 66 CLEN 77 W 1388 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 10:13:13 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asp-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Asp-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asp-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9139 EFFN 9139.000000 CKSUM 1637946751 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8727 0.71885 ECMLC 0.58556 -9.69288 1.30307 1600000 750756 0.001598 ECMGC 0.29510 -35.51064 -21.81907 1600000 22739 0.017591 ECMLI 0.57393 -9.56120 1.58175 1600000 718825 0.001669 ECMGI 0.30497 -34.03747 -20.80529 1600000 22627 0.017678 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1388 2973 -18.084 -19.329 -0.349 -2.219 IL 1 1 2 1 4 20 43 1392 2977 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 44 1392 2977 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 300 - A - - MR 3 2 3 5 3 23 44 1391 2976 -19.144 -0.000 -17.461 2.000 -14.769 -14.043 -14.100 D 4 2 3 5 3 16 40 1388 2973 -18.367 -13.545 -0.000 IR 5 5 3 5 3 21 43 1391 2976 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 299 - C - - MR 6 5 3 8 3 22 43 1390 2975 -19.144 -0.000 -17.461 -15.907 2.000 -17.164 -13.968 D 7 5 3 8 3 16 40 1388 2973 -18.367 -13.545 -0.000 IR 8 8 3 8 3 21 43 1390 2975 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 298 - C - - MR 9 8 3 11 3 21 42 1389 2974 -19.144 -0.000 -17.461 -15.907 2.000 -17.164 -13.968 D 10 8 3 11 3 16 40 1388 2973 -18.367 -0.001 -11.140 IR 11 11 3 11 3 15 30 1389 2974 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 297 - G - - MR 12 11 3 14 5 20 41 1388 2973 -7.345 -0.207 -17.947 -2.969 -19.051 -4.156 -2.350 1.874 -3.616 D 13 11 3 14 5 12 26 1381 2966 -6.063 -1.418 -3.689 -5.120 -0.987 IR 14 14 3 14 5 17 41 1388 2973 -7.628 -0.011 -11.139 -9.307 -10.413 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 295 G C - - MP 15 14 3 19 6 19 41 1387 2972 -18.863 -18.803 -0.001 -10.205 -17.859 -18.254 -16.822 -11.113 -19.279 -0.246 -0.194 -11.283 -12.722 -18.676 -14.790 3.818 -3.968 -3.127 -13.090 -11.325 -15.178 -18.444 ML 16 14 3 19 6 14 28 1382 2967 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 19 38 1385 2971 -17.502 -16.231 -1.230 -16.209 -0.802 -14.423 -12.265 1.772 -12.920 -0.774 D 18 14 3 19 6 11 26 1375 2960 -10.059 -8.758 -4.555 -5.237 -5.254 -0.150 IL 19 19 5 19 6 14 29 1386 2971 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 15 30 1386 2971 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 294 G C - - MP 21 20 6 25 6 23 39 1385 2970 -18.949 -18.889 -0.000 -17.665 -17.945 -18.340 -12.914 -11.552 -12.732 -0.208 -13.863 -9.645 -0.243 -11.183 -3.065 3.619 -13.417 0.799 -3.361 -4.473 -10.937 -10.609 ML 22 20 6 25 6 13 27 1378 2964 -9.667 -10.013 -4.727 -1.165 -9.863 -0.963 1.084 -2.833 0.628 -2.367 MR 23 20 6 25 6 18 37 1384 2969 -16.701 -15.430 -0.385 -15.408 -2.094 -13.622 -0.127 1.618 -10.502 -6.149 D 24 20 6 25 6 11 26 1374 2959 -10.059 -8.758 -4.555 -5.237 -5.254 -0.150 IL 25 25 5 25 6 15 29 1384 2969 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 15 30 1384 2969 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 293 A U - - MP 27 26 6 31 6 22 37 1383 2968 -19.034 -18.974 -0.000 -12.144 -13.201 -18.425 -13.734 -12.955 -3.469 3.290 -4.872 -14.339 0.003 -11.279 -13.685 1.103 -14.090 -3.142 1.499 -13.725 -9.876 -12.364 ML 28 26 6 31 6 15 32 1382 2967 -8.646 -8.993 -0.174 -3.401 -8.842 -6.372 1.834 -3.074 -2.638 -2.688 MR 29 26 6 31 6 17 35 1382 2967 -14.611 -13.340 -0.026 -13.318 -5.849 -11.531 1.978 -8.967 -8.484 -4.199 D 30 26 6 31 6 11 26 1373 2958 -12.204 -10.903 -6.700 -7.382 -7.399 -0.032 IL 31 31 5 31 6 14 29 1382 2967 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 15 30 1382 2967 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 292 g c - - MP 33 32 6 37 6 20 35 1381 2966 -19.059 -7.539 -0.008 -17.775 -18.055 -18.450 -13.052 -5.857 -12.876 -2.126 -13.843 -6.531 1.779 -13.510 -13.292 2.570 -13.549 2.539 -1.555 -12.741 -2.188 -10.752 ML 34 32 6 37 6 15 30 1378 2963 -8.176 -8.522 -3.236 -0.204 -8.372 -5.901 -1.754 1.628 -2.579 -1.165 MR 35 32 6 37 6 15 30 1378 2963 -9.312 -8.041 -3.950 -8.019 -0.132 -6.233 -1.739 -1.323 -2.485 1.643 D 36 32 6 37 6 11 26 1373 2958 -12.204 -10.903 -6.700 -7.382 -7.399 -0.032 IL 37 37 5 37 6 14 29 1380 2965 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 17 33 1380 2965 -7.439 -0.013 -10.950 -9.118 -10.224 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 290 C G - - MP 39 38 6 43 6 18 33 1379 2964 -19.059 -18.998 -0.000 -17.775 -18.055 -18.450 -13.366 -13.068 -13.365 -0.613 -9.944 -14.207 3.176 -10.151 -13.224 0.518 -13.736 -2.239 2.093 -13.549 -1.334 -11.943 ML 40 38 6 43 6 15 30 1377 2962 -8.176 -8.522 -3.236 -0.204 -8.372 -5.901 -1.754 1.628 -2.579 -1.165 MR 41 38 6 43 6 15 29 1376 2962 -9.312 -8.041 -3.950 -8.019 -0.132 -6.233 -0.827 -0.043 -1.344 1.051 D 42 38 6 43 6 11 26 1373 2958 -12.204 -10.903 -6.700 -7.382 -7.399 -0.032 IL 43 43 5 43 6 14 29 1378 2963 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 15 29 1378 2963 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 289 G C - - MP 45 44 6 49 6 16 31 1377 2962 -7.546 -18.998 -0.008 -17.775 -18.055 -18.450 -13.201 -5.865 -1.063 -0.780 -9.879 -13.823 1.731 -13.115 -9.459 3.057 -13.635 -4.956 0.577 -0.241 -0.209 -4.624 ML 46 44 6 49 6 14 29 1376 2961 -8.176 -8.522 -0.246 -2.931 -8.372 -5.901 -1.754 1.628 -2.579 -1.165 MR 47 44 6 49 6 14 28 1375 2961 -9.312 -8.041 -0.743 -8.019 -1.395 -6.233 0.066 -0.826 -1.368 1.001 D 48 44 6 49 6 11 26 1372 2958 -12.204 -10.903 -3.018 -7.382 -7.399 -0.211 IL 49 49 5 49 6 15 30 1376 2961 -8.306 -8.569 -0.011 -10.224 -11.001 -10.661 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 14 29 1376 2961 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 288 G C - - MP 51 50 6 55 4 14 29 1375 2960 -18.289 -7.623 -0.051 -5.063 -16.701 -13.592 -18.116 -0.515 -18.310 -14.820 -3.992 -18.014 -14.956 3.864 -15.168 -2.768 -0.951 -5.880 -15.143 -17.009 ML 52 50 6 55 4 13 27 1374 2959 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 12 27 1373 2959 -6.157 -5.186 -2.281 -0.410 -0.900 1.287 -1.679 -0.491 D 54 50 6 55 4 11 26 1372 2957 -7.465 -7.146 -5.162 -0.060 IL 55 55 5 55 4 13 28 1375 2960 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 13 28 1374 2959 -6.318 -0.021 -9.018 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - U - - - ML 57 56 6 59 3 12 27 1373 2958 -19.155 -0.000 -17.809 -13.357 -5.853 -6.213 1.989 D 58 56 6 59 3 11 26 1372 2957 -15.581 -0.001 -9.973 IL 59 59 3 59 3 12 27 1374 2959 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - A - - - ML 60 59 3 62 2 11 26 1372 2957 -19.855 -0.000 1.708 -7.024 -0.463 -13.992 D 61 59 3 62 2 10 25 1371 2956 -8.445 -0.004 IL 62 62 3 62 2 11 26 1372 2958 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 10 25 1371 2956 [ BEGR 47 ] - - - - - - S 64 63 1 65 3 0 2 199 434 -19.199 -0.000 -17.853 IL 65 65 2 65 3 1 2 203 438 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 240 - G - - - ML 66 65 2 68 3 1 2 199 434 -19.199 -0.098 -3.931 0.656 -1.847 1.059 -4.007 D 67 65 2 68 3 0 1 216 451 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 2 201 436 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 241 - G - - - ML 69 68 3 71 3 1 2 192 427 -3.825 -0.106 -17.756 -2.954 -7.450 1.899 -2.879 D 70 68 3 71 3 0 1 221 456 -0.481 -1.820 -11.080 IL 71 71 3 71 3 1 1 225 460 -0.113 -4.583 -4.894 0.000 0.000 0.000 0.000 [ MATL 50 ] 263 - G - - - ML 72 71 3 74 3 1 2 26 44 -19.125 -0.000 -17.779 -0.356 -6.508 1.681 -14.070 D 73 71 3 74 3 0 0 25 43 -16.310 -11.823 -0.000 IL 74 74 3 74 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 264 - U - - - ML 75 74 3 77 3 1 1 25 43 -19.125 -0.008 -7.420 -2.040 -1.635 -4.498 1.762 D 76 74 3 77 3 0 0 24 42 -16.310 -0.214 -2.861 IL 77 77 3 77 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 265 - C - - - ML 78 77 3 80 5 1 2 23 42 -18.114 -0.000 -17.929 -18.142 -19.033 -4.487 1.904 -13.660 -2.237 D 79 77 3 80 5 0 0 22 36 -12.256 -8.100 -11.518 -0.855 -1.174 IL 80 80 3 80 5 1 1 27 42 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 266 286 G U - - MP 81 80 3 85 6 2 3 22 41 -19.042 -6.853 -0.013 -13.552 -18.038 -18.433 -15.091 -3.942 -15.287 -0.729 -17.428 -18.583 -12.886 -15.329 -14.847 -1.046 -5.123 3.862 -12.810 -16.592 -14.716 -1.869 ML 82 80 3 85 6 1 1 24 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 21 35 -13.312 -12.041 -7.950 -12.020 -7.153 -0.017 1.995 -8.186 -7.450 -7.582 D 84 80 3 85 6 0 0 19 33 -15.603 -14.301 -10.098 -10.780 -10.798 -0.003 IL 85 85 5 85 6 1 1 25 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 21 40 -7.483 -0.011 -11.606 -9.774 -10.880 0.000 0.000 0.000 0.000 [ MATP 54 ] 267 283 C G - - MP 87 86 6 91 6 2 3 20 39 -19.042 -18.982 -0.008 -17.758 -7.552 -18.433 -16.006 -15.960 -3.948 -0.319 -13.857 -15.646 3.852 -14.717 -15.465 -1.307 -15.632 -13.927 -1.823 -15.968 -11.557 -6.826 ML 88 86 6 91 6 1 1 22 38 -7.268 -7.614 -0.504 -2.023 -7.464 -4.993 -0.538 1.027 -1.285 -0.214 MR 89 86 6 91 6 1 1 22 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 17 32 -16.763 -15.461 -11.258 -11.940 -11.958 -0.001 IL 91 91 5 91 6 1 1 24 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 23 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 268 282 G C - - MP 93 92 6 97 6 2 3 18 37 -19.035 -18.974 -0.000 -17.750 -11.570 -18.425 -16.957 -3.953 -19.235 -0.190 -18.578 -9.936 0.411 -18.728 -14.958 3.743 -15.150 -1.570 -13.245 -15.216 -15.328 -18.328 ML 94 92 6 97 6 1 1 22 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 18 36 -12.923 -11.652 -0.016 -11.630 -6.764 -9.844 -7.143 1.991 -7.606 -6.193 D 96 92 6 97 6 0 0 16 32 -16.763 -15.461 -11.258 -11.940 -11.958 -0.001 IL 97 97 5 97 6 1 1 22 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 21 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 269 281 G C - - MP 99 98 6 103 6 2 3 16 35 -19.042 -6.580 -0.015 -17.758 -18.037 -18.433 -16.872 -4.132 -18.802 -0.831 -18.557 -14.798 -12.900 -18.416 -14.964 3.943 -15.168 -8.045 -13.251 -15.253 -15.330 -17.721 ML 100 98 6 103 6 1 1 21 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 19 35 -9.207 -7.936 -0.226 -7.915 -3.048 -6.128 -2.124 -2.012 -2.883 1.760 D 102 98 6 103 6 0 0 15 32 -16.763 -15.461 -11.258 -11.940 -11.958 -0.001 IL 103 103 5 103 6 1 1 20 36 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 16 34 -8.360 -0.007 -11.871 -10.039 -11.145 0.000 0.000 0.000 0.000 [ MATP 57 ] 270 279 G C - - MP 105 104 6 109 4 2 3 14 32 -18.272 -7.529 -0.008 -16.893 -16.985 -6.146 -19.362 -3.665 -18.611 -14.758 -12.901 -18.795 -5.147 3.979 -15.159 -4.528 -13.267 -3.863 -15.354 -18.482 ML 106 104 6 109 4 1 1 20 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 20 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 15 32 -12.185 -11.867 -9.882 -0.002 IL 109 109 5 109 4 1 1 22 37 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 13 31 -6.392 -0.020 -9.092 0.000 0.000 0.000 0.000 [ MATL 58 ] 271 - U - - - ML 111 110 6 113 3 1 2 12 30 -19.181 -0.000 -17.835 -13.625 -7.142 -5.104 1.987 D 112 110 6 113 3 0 0 13 32 -14.297 -9.810 -0.002 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 272 - U - - - ML 114 113 3 116 3 1 2 11 29 -19.181 -0.000 -17.835 -13.639 -5.989 -7.158 1.992 D 115 113 3 116 3 0 0 12 31 -14.297 -0.851 -1.166 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 273 - C - - - ML 117 116 3 119 3 1 2 10 28 -19.191 -0.000 -17.845 -13.296 1.984 -6.220 -5.009 D 118 116 3 119 3 0 0 12 30 -13.134 -8.647 -0.004 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 274 - G - - - ML 120 119 3 122 3 1 2 8 27 -19.191 -0.000 -17.845 -1.689 -15.470 1.884 -14.457 D 121 119 3 122 3 0 0 11 29 -13.134 -8.647 -0.004 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 275 - A - - - ML 123 122 3 125 3 1 2 7 25 -19.191 -0.000 -17.845 1.993 -7.545 -7.557 -6.958 D 124 122 3 125 3 0 0 10 28 -13.134 -8.647 -0.004 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 276 - G - - - ML 126 125 3 128 3 1 1 5 24 -19.191 -0.000 -17.845 -0.259 -3.016 1.436 -1.581 D 127 125 3 128 3 0 0 8 27 -13.134 -0.008 -7.526 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 277 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -6.957 -1.250 -6.688 1.833 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 3 16 1348 2933 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 188 3 16 1348 2933 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 5 1288 2874 -0.000 -17.191 -16.598 -17.238 [ MATP 18 ] 11 141 G U - - MP 136 135 1 140 6 2 7 1288 2874 -19.060 -19.000 -0.046 -5.000 -18.056 -18.451 -15.110 -13.769 -15.305 -2.390 -17.446 -18.588 -12.903 -15.348 -3.032 2.377 -0.155 3.162 -12.828 -1.064 -3.170 -4.234 ML 137 135 1 140 6 1 2 1284 2869 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 1 2 1280 2865 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 1 140 6 0 1 1252 2837 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 2 1286 2871 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 2 1286 2871 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 140 U A - - MP 142 141 6 146 6 2 7 1287 2872 -7.125 -18.954 -0.050 -5.204 -18.010 -18.405 -15.672 -15.757 -15.154 -1.638 -13.596 -15.415 1.604 -14.468 -2.986 -2.889 -15.406 -13.782 3.534 -15.600 -2.442 -0.718 ML 143 141 6 146 6 1 5 1284 2870 -14.939 -15.285 -10.000 -0.002 -15.135 -12.665 1.999 -10.202 -9.438 -9.542 MR 144 141 6 146 6 1 2 1278 2863 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 6 146 6 0 1 1242 2827 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 5 1286 2871 -8.678 -8.941 -0.009 -10.596 -11.372 -11.032 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 2 1284 2869 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 139 U A - - MP 148 147 6 152 6 2 7 1285 2870 -18.975 -18.914 -0.001 -17.691 -11.150 -18.366 -4.718 -15.833 -15.169 -3.464 -12.696 -10.610 -1.661 -14.476 -2.946 2.290 -15.417 -13.920 3.264 -0.155 -4.931 -14.022 ML 149 147 6 152 6 1 5 1284 2869 -15.818 -16.164 -0.028 -5.715 -16.014 -13.543 -2.525 -7.990 1.058 0.799 MR 150 147 6 152 6 1 2 1276 2861 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 6 152 6 0 1 1229 2814 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 2 1281 2866 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 2 1282 2867 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 138 C G - - MP 154 153 6 158 4 2 6 1283 2868 -18.288 -18.495 -0.000 -13.163 -0.276 -13.056 -12.598 -2.582 -2.969 -13.030 3.365 0.282 -5.949 -3.635 -12.806 -0.426 0.742 -13.538 -1.956 -0.762 ML 155 153 6 158 4 1 2 1281 2866 -7.268 -7.451 -0.038 -6.180 -4.271 -3.891 -5.074 1.945 MR 156 153 6 158 4 1 2 1275 2860 -7.492 -6.521 -0.165 -3.449 -2.716 -4.077 1.886 -3.446 D 157 153 6 158 4 0 1 1209 2795 -4.568 -4.250 -2.265 -0.520 IL 158 158 5 158 4 1 2 1277 2862 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 2 1276 2861 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - A - - - ML 160 159 6 162 3 1 4 1281 2866 -19.199 -0.000 -17.853 1.995 -7.155 -6.957 -14.412 D 161 159 6 162 3 0 0 1142 2727 -7.872 -3.385 -0.152 IL 162 162 3 162 3 1 2 1274 2859 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - G - - - ML 163 162 3 165 3 1 3 1280 2865 -19.199 -0.000 -17.853 -1.513 -7.496 1.863 -7.307 D 164 162 3 165 3 0 0 1092 2677 -7.872 -3.385 -0.152 IL 165 165 3 165 3 1 2 1272 2857 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - U - - - ML 166 165 3 168 3 1 2 1279 2864 -1.954 -0.828 -2.486 -1.863 0.670 -4.459 1.063 D 167 165 3 168 3 0 0 925 2510 -7.872 -3.385 -0.152 IL 168 168 3 168 3 1 5 1394 2979 -0.017 -6.436 -21.074 0.000 0.000 0.000 0.000 [ MATL 25 ] 122 - U - - - ML 169 168 3 171 3 1 2 39 80 -4.163 -0.083 -17.570 -1.372 -1.013 -12.229 1.641 D 170 168 3 171 3 0 0 38 79 -18.133 -0.004 -8.660 IL 171 171 3 171 3 1 2 39 80 -3.151 -0.173 -12.322 0.000 0.000 0.000 0.000 [ MATL 26 ] 125 - G - - - ML 172 171 3 174 3 1 2 38 79 -19.199 -0.000 -17.853 -13.893 -15.420 1.827 -1.145 D 173 171 3 174 3 0 0 37 78 -9.520 -0.101 -3.911 IL 174 174 3 174 3 1 1 39 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 126 - G - - - ML 175 174 3 177 3 1 2 37 78 -19.199 -0.000 -17.853 -1.986 -14.671 1.906 -14.009 D 176 174 3 177 3 0 0 34 75 -6.174 -1.687 -0.566 IL 177 177 3 177 3 1 1 38 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 127 - U - - - ML 178 177 3 180 3 1 1 36 77 -2.472 -0.313 -6.058 -1.732 -1.176 -12.816 1.703 D 179 177 3 180 3 0 0 29 70 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 2 39 80 -0.642 -1.477 -15.598 0.000 0.000 0.000 0.000 [ MATL 29 ] 136 - U - - - ML 181 180 3 183 3 1 1 5 24 -19.177 -0.000 -17.832 -1.665 -1.083 -3.736 1.650 D 182 180 3 183 3 0 0 7 26 -14.564 -0.003 -8.955 IL 183 183 3 183 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 137 - A - - - ML 184 183 3 186 2 1 1 1 1 * 0.000 1.832 -3.137 -2.381 -2.896 D 185 183 3 186 2 0 0 0 0 * 0.000 IL 186 186 3 186 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 187 186 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 188 134 1 189 3 0 0 938 2097 -19.199 -0.000 -17.853 IL 189 189 2 189 3 1 1 939 2097 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 142 - G - - - ML 190 189 2 192 5 1 1 938 2097 -5.139 -0.127 -17.948 -4.155 -19.051 0.783 -3.111 1.083 -4.471 D 191 189 2 192 5 0 0 928 2086 -4.959 -0.803 -4.221 -2.596 -2.508 IL 192 192 3 192 5 1 1 938 2097 -9.804 -0.002 -11.483 -13.315 -12.589 0.000 0.000 0.000 0.000 [ MATP 34 ] 144 239 C G - - MP 193 192 3 197 6 2 2 937 2096 -18.977 -18.916 -0.005 -8.081 -17.973 -18.368 -3.092 -14.474 -5.796 -4.273 -3.690 -14.961 3.683 -13.838 -14.364 -4.989 -0.158 -0.166 -0.030 -14.719 -3.387 -13.111 ML 194 192 3 197 6 1 1 889 2048 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 3 197 6 1 1 936 2095 -16.317 -15.046 -0.002 -15.024 -10.158 -13.238 -9.577 -11.342 1.999 -10.331 D 196 192 3 197 6 0 0 873 2032 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 931 2089 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 933 2092 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 145 238 C G - - MP 199 198 6 203 6 2 2 935 2094 -19.055 -18.995 -0.008 -17.771 -7.561 -18.446 -15.129 -15.008 -14.811 -2.619 -13.395 -15.254 3.802 -14.195 -14.789 -0.369 -9.644 -8.247 -1.681 -15.173 -0.399 -4.862 ML 200 198 6 203 6 1 1 731 1890 -11.801 -12.147 -6.862 -0.016 -11.997 -9.527 -6.502 1.986 -6.953 -5.592 MR 201 198 6 203 6 1 1 929 2088 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 857 2016 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 929 2087 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 932 2090 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 146 237 u a - - MP 205 204 6 209 6 2 2 933 2092 -19.048 -18.987 -0.000 -17.764 -18.043 -18.438 -13.853 -6.886 -13.786 -1.221 -13.861 -14.656 0.084 -0.366 -10.770 2.726 -14.285 -8.791 2.823 -5.143 -11.214 -12.569 ML 206 204 6 209 6 1 1 713 1872 -11.801 -12.147 -6.862 -6.556 -11.997 -0.029 -6.754 -6.121 -7.671 1.990 MR 207 204 6 209 6 1 1 933 2092 -12.928 -0.028 -6.907 -11.635 -6.769 -9.848 -7.148 1.991 -7.611 -6.197 D 208 204 6 209 6 0 0 829 1987 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 930 2088 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 932 2091 -7.410 -0.013 -10.921 -9.089 -10.195 0.000 0.000 0.000 0.000 [ MATP 37 ] 147 235 G C - - MP 211 210 6 215 6 2 2 931 2090 -3.669 -18.995 -0.150 -14.419 -5.641 -18.446 -13.093 0.017 -12.916 -4.845 -14.041 -10.914 0.933 -8.611 -13.337 3.664 -13.587 -2.175 -3.659 -4.213 -11.119 -6.407 ML 212 210 6 215 6 1 1 922 2080 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 6 1 1 925 2084 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 214 210 6 215 6 0 0 656 1814 -14.942 -13.641 -9.438 -10.120 -10.137 -0.005 IL 215 215 5 215 6 1 1 930 2089 -12.155 -12.418 -0.001 -14.073 -14.849 -14.510 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 928 2087 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 149 234 C G - - MP 217 216 6 221 4 2 2 929 2088 -18.256 -18.463 -0.000 -16.877 -13.416 -13.122 -3.482 -0.714 -7.398 -5.106 3.795 -9.521 -13.268 -0.278 -3.510 -6.904 -1.849 -13.594 -2.425 -11.988 ML 218 216 6 221 4 1 1 920 2079 -4.246 -4.429 -0.342 -3.158 -0.197 0.660 -0.911 0.023 MR 219 216 6 221 4 1 1 928 2087 -12.856 -11.885 -0.004 -8.813 -8.118 -9.891 1.998 -8.878 D 220 216 6 221 4 0 0 638 1797 -10.366 -10.047 -8.063 -0.008 IL 221 221 5 221 4 1 1 924 2083 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 1 923 2081 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 150 - C - - - ML 223 222 6 225 3 1 1 927 2086 -19.194 -0.000 -17.848 -13.272 1.879 -2.439 -2.860 D 224 222 6 225 3 0 0 592 1750 -12.472 -7.985 -0.006 IL 225 225 3 225 3 1 1 922 2080 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 151 - U - - - ML 226 225 3 228 3 1 1 926 2085 -2.152 -0.368 -17.848 -16.221 -2.301 -17.606 1.925 D 227 225 3 228 3 0 0 475 1634 -12.472 -7.985 -0.006 IL 228 228 3 228 3 1 1 1019 2177 -0.023 -5.986 -20.422 0.000 0.000 0.000 0.000 [ MATL 41 ] 229 - g - - - ML 229 228 3 231 3 1 1 10 28 -19.194 -0.000 -17.848 -0.496 -0.932 0.601 0.321 D 230 228 3 231 3 0 0 12 31 -12.472 -7.985 -0.006 IL 231 231 3 231 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 230 - U - - - ML 232 231 3 234 3 1 1 8 27 -19.194 -0.000 -17.848 -0.931 -0.932 -0.517 1.171 D 233 231 3 234 3 0 0 11 30 -12.472 -7.985 -0.006 IL 234 234 3 234 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 231 - C - - - ML 235 234 3 237 3 1 1 7 25 -19.194 -0.000 -17.848 -0.931 1.172 -0.518 -0.931 D 236 234 3 237 3 0 0 10 29 -12.472 -7.985 -0.006 IL 237 237 3 237 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 232 - A - - - ML 238 237 3 240 3 1 1 5 24 -19.194 -0.000 -17.848 1.941 -5.670 -4.451 -3.402 D 239 237 3 240 3 0 0 9 27 -12.472 -7.985 -0.006 IL 240 240 3 240 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 233 - C - - - ML 241 240 3 243 2 1 1 1 1 * 0.000 -0.994 1.803 -14.024 -6.730 D 242 240 3 243 2 0 0 0 0 * 0.000 IL 243 243 3 243 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 244 243 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Asp ACC bact-Asp-r2-022416 LENG 77 MAXL 1321 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 10:13:13 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Asp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Asp-r2-022416.sto NSEQ 9139 EFFN 6.846127 CKSUM 1637946751 STATS LOCAL MSV -8.5484 0.71885 STATS LOCAL VITERBI -9.3592 0.71885 STATS LOCAL FORWARD -3.1176 0.71885 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58106 1.33152 1.22799 1.43848 1.38629 1.38629 1.38629 1.38629 0.11204 4.46144 2.35971 1.46634 0.26236 0.00000 * 1 1.93876 2.38834 0.38145 2.50758 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02550 4.37490 4.37490 1.46634 0.26236 0.82013 0.58049 2 1.87908 2.42106 0.39401 2.47577 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02472 4.41906 4.39234 1.46634 0.26236 0.35473 1.20853 3 1.06554 1.76243 1.34221 1.50254 3 a - - ( 1.38629 1.38629 1.38629 1.38629 0.02342 4.46232 4.45570 1.46634 0.26236 1.10760 0.40100 4 2.02407 1.71526 0.56833 2.10788 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02304 4.47499 4.47499 1.46634 0.26236 1.10979 0.39992 5 2.23982 0.85318 1.83427 1.17852 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02304 4.47499 4.47499 1.46634 0.26236 1.10979 0.39992 6 1.80859 1.56537 0.92766 1.46264 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02716 4.17339 4.47499 1.13166 0.38934 1.10979 0.39992 7 2.27401 3.16572 0.23070 2.79790 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04625 4.47521 3.38691 1.46634 0.26236 1.10979 0.39992 8 3.28240 3.11335 3.70625 0.11268 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.02357 4.45254 4.45254 1.46634 0.26236 0.51044 0.91688 9 0.28979 3.40238 1.72924 3.19742 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.02303 4.47561 4.47561 1.46634 0.26236 1.09861 0.40547 10 1.88204 2.30678 0.45516 2.17337 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02303 4.47561 4.47561 1.46634 0.26236 1.09861 0.40547 11 2.23296 1.31866 2.09618 0.68842 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02837 4.09900 4.47561 1.06180 0.42439 1.09861 0.40547 12 1.99566 1.74989 1.23682 0.91634 14 u - - < 1.38629 1.38629 1.38629 1.38629 0.02335 4.47561 4.44888 1.46634 0.26236 1.09861 0.40547 13 1.81017 0.90423 1.78180 1.33490 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.02311 4.47530 4.46869 1.46634 0.26236 1.08088 0.41445 14 0.04653 4.36746 3.99273 4.24557 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02303 4.47553 4.47553 1.46634 0.26236 1.10082 0.40436 15 2.35040 3.86517 0.15775 3.51828 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02303 4.47553 4.47553 1.46634 0.26236 1.10082 0.40436 16 1.98455 1.06950 2.74261 0.78751 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.43083 1.58554 1.92969 4.42830 0.01201 1.10082 0.40436 17 1.99331 1.91339 2.88905 0.41468 122 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06827 2.94041 4.33187 0.50518 0.92482 0.14773 1.98536 18 3.02136 3.72613 0.17739 2.41096 125 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02304 4.47530 4.47530 1.46634 0.26236 1.08088 0.41445 19 2.66360 4.20634 0.11247 3.82663 126 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02303 4.47561 4.47561 1.46634 0.26236 1.09861 0.40547 20 2.21643 2.04488 3.14804 0.33035 127 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18531 1.92055 3.78844 1.05029 0.43053 1.09861 0.40547 21 2.09039 1.96724 2.80605 0.39145 136 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02329 4.46429 4.46429 1.46634 0.26236 0.69614 0.69016 22 0.25087 2.73708 2.56423 2.52400 137 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02384 4.47561 4.40815 1.46634 0.26236 1.09861 0.40547 23 1.50087 2.04107 0.85495 1.50565 138 g - - > 1.38629 1.38629 1.38629 1.38629 0.06739 4.47481 2.92287 1.46634 0.26236 1.12161 0.39416 24 1.05290 1.27125 1.56761 1.81985 139 a - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43150 4.43150 1.46634 0.26236 0.91077 0.51452 25 0.79456 2.29864 1.17732 1.96809 140 a - - > 1.38629 1.38629 1.38629 1.38629 0.02359 4.45189 4.45189 1.46634 0.26236 0.50305 0.92806 26 2.47652 0.97625 1.97631 0.91463 141 u - - > 1.38629 1.38629 1.38629 1.38629 0.02303 4.47561 4.47561 1.46634 0.26236 1.09861 0.40547 27 0.94881 2.64975 0.79065 2.42384 142 g - - , 1.38629 1.38629 1.38629 1.38629 0.09006 3.42184 2.92865 0.59346 0.80389 1.09861 0.40547 28 2.18349 0.70484 1.77025 1.50115 144 c - - < 1.38629 1.38629 1.38629 1.38629 0.02405 4.43261 4.43261 1.46634 0.26236 0.35473 1.20853 29 2.83257 0.40066 2.33208 1.74774 145 C - - < 1.38629 1.38629 1.38629 1.38629 0.02709 4.47561 4.17730 1.46634 0.26236 1.09861 0.40547 30 2.08018 1.58122 1.09341 1.09573 146 g - - < 1.38629 1.38629 1.38629 1.38629 0.02581 4.47164 4.26505 1.46634 0.26236 0.90993 0.51509 31 1.85460 2.16402 0.44032 2.46753 147 G - - < 1.38629 1.38629 1.38629 1.38629 0.10176 2.65457 3.63344 0.29795 1.35611 1.17232 0.37055 32 2.25694 0.56761 1.99041 1.65123 149 C - - < 1.38629 1.38629 1.38629 1.38629 0.02345 4.45786 4.45786 1.46634 0.26236 0.67444 0.71222 33 3.28989 0.17135 3.16244 2.55247 150 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02309 4.47299 4.47299 1.46634 0.26236 1.17232 0.37055 34 3.28928 2.60361 3.80476 0.14335 151 U - - _ 1.38629 1.38629 1.38629 1.38629 0.21247 1.71480 4.47299 4.11270 0.01650 1.17232 0.37055 35 1.42139 1.82001 1.23498 1.18497 229 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02309 4.47299 4.47299 1.46634 0.26236 1.17232 0.37055 36 1.55954 1.79652 1.75627 0.79583 230 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02309 4.47299 4.47299 1.46634 0.26236 1.17232 0.37055 37 1.61156 0.89106 1.79423 1.49635 231 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02309 4.47299 4.47299 1.46634 0.26236 1.17232 0.37055 38 0.12066 3.46485 3.25993 3.12363 232 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02309 4.47299 4.47299 1.46634 0.26236 1.17232 0.37055 39 2.21905 0.22800 3.73306 2.64162 233 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02312 4.47299 4.47029 1.46634 0.26236 1.17232 0.37055 40 1.88257 2.14750 0.50194 2.07409 234 G - - > 1.38629 1.38629 1.38629 1.38629 0.02309 4.47296 4.47296 1.46634 0.26236 1.17046 0.37139 41 2.72547 0.47009 2.04005 1.71749 235 C - - > 1.38629 1.38629 1.38629 1.38629 0.02715 4.17549 4.47299 1.13561 0.38747 1.17232 0.37055 42 1.20832 1.16887 1.52264 1.75765 237 c - - > 1.38629 1.38629 1.38629 1.38629 0.02309 4.47299 4.47299 1.46634 0.26236 1.17232 0.37055 43 2.13298 2.43794 0.33258 2.56256 238 G - - > 1.38629 1.38629 1.38629 1.38629 0.02309 4.47299 4.47299 1.46634 0.26236 0.96573 0.47917 44 1.67895 2.20835 0.60056 1.86406 239 G - - > 1.38629 1.38629 1.38629 1.38629 0.02303 4.47561 4.47561 1.46634 0.26236 1.09861 0.40547 45 1.04386 2.29848 0.82409 2.21766 240 g - - , 1.38629 1.38629 1.38629 1.38629 0.03737 4.47561 3.67698 1.46634 0.26236 1.09861 0.40547 46 2.67182 3.66987 0.15701 2.98189 241 G - - , 1.38629 1.38629 1.38629 1.38629 0.11534 2.32900 4.46159 2.46918 0.08845 0.64180 0.74728 47 1.64560 3.41318 0.31496 3.11572 263 G - - , 1.38629 1.38629 1.38629 1.38629 0.06249 4.47561 3.01196 1.46634 0.26236 1.09861 0.40547 48 2.29175 2.20227 3.02199 0.30157 264 U - - , 1.38629 1.38629 1.38629 1.38629 0.02838 4.43706 4.12591 1.46634 0.26236 0.49173 0.94563 49 3.27634 0.14952 3.99360 2.49280 265 C - - , 1.38629 1.38629 1.38629 1.38629 0.02325 4.46622 4.46622 1.46634 0.26236 1.34039 0.30346 50 2.20637 4.01441 0.17974 3.31441 266 G - - < 1.38629 1.38629 1.38629 1.38629 0.02325 4.46622 4.46622 1.46634 0.26236 1.34039 0.30346 51 2.44527 0.38428 2.42612 1.93808 267 C - - < 1.38629 1.38629 1.38629 1.38629 0.02733 4.46622 4.16872 1.46634 0.26236 1.34039 0.30346 52 2.05511 2.44340 0.32189 2.80883 268 G - - < 1.38629 1.38629 1.38629 1.38629 0.02359 4.46223 4.44140 1.46634 0.26236 1.12970 0.39028 53 2.83992 4.22262 0.09353 4.12295 269 G - - < 1.38629 1.38629 1.38629 1.38629 0.02326 4.46598 4.46598 1.46634 0.26236 1.32505 0.30896 54 3.13337 4.08370 0.08428 3.89153 270 G - - < 1.38629 1.38629 1.38629 1.38629 0.02325 4.46622 4.46622 1.46634 0.26236 1.34039 0.30346 55 3.22010 3.10148 3.56695 0.12011 271 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02325 4.46622 4.46622 1.46634 0.26236 1.34039 0.30346 56 3.41269 3.21860 3.87170 0.09848 272 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02325 4.46622 4.46622 1.46634 0.26236 0.96501 0.47962 57 3.90380 0.07525 4.21302 3.28275 273 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02313 4.47144 4.47144 1.46634 0.26236 1.21343 0.35265 58 2.50427 4.09617 0.13061 3.72688 274 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02313 4.47144 4.47144 1.46634 0.26236 1.21343 0.35265 59 0.04808 4.34003 3.99915 4.16193 275 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02313 4.47144 4.47144 1.46634 0.26236 1.21343 0.35265 60 1.50900 2.54988 0.56790 2.00945 276 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02313 4.47144 4.47144 1.46634 0.26236 0.90228 0.52028 61 2.93008 2.17075 3.42550 0.22317 277 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03678 4.17399 3.87647 1.13164 0.38935 1.09861 0.40547 62 4.08642 0.10064 3.92316 2.82740 279 C - - > 1.38629 1.38629 1.38629 1.38629 0.03128 3.94758 4.46622 0.94110 0.49462 1.34039 0.30346 63 4.23423 0.10924 4.05513 2.63580 281 C - - > 1.38629 1.38629 1.38629 1.38629 0.02325 4.46622 4.46622 1.46634 0.26236 1.34039 0.30346 64 3.05107 0.37622 2.32507 1.78104 282 C - - > 1.38629 1.38629 1.38629 1.38629 0.02331 4.46622 4.46111 1.46634 0.26236 1.34039 0.30346 65 2.16170 2.57531 0.34556 2.29346 283 G - - > 1.38629 1.38629 1.38629 1.38629 0.02989 4.01972 4.46616 1.00101 0.45809 0.96284 0.48096 66 3.86702 2.36725 3.70864 0.14986 286 U - - > 1.38629 1.38629 1.38629 1.38629 0.02736 4.18337 4.44472 1.14476 0.38317 0.90228 0.52028 67 2.97638 0.26863 2.98512 2.00945 288 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02320 4.47525 4.46135 1.46634 0.26236 1.10760 0.40100 68 1.81451 0.95987 1.32196 1.67382 289 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02304 4.47509 4.47509 1.46634 0.26236 1.11221 0.39873 69 1.34717 2.00046 0.75834 1.99285 290 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02717 4.17221 4.47509 1.13043 0.38993 1.11221 0.39873 70 2.35577 0.92353 1.58736 1.19204 292 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02329 4.47509 4.45399 1.46634 0.26236 1.09831 0.40562 71 1.62844 1.47033 1.60239 0.98752 293 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02304 4.47501 4.47501 1.46634 0.26236 1.11462 0.39756 72 2.55781 0.53776 2.25367 1.45475 294 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02304 4.47501 4.47501 1.46634 0.26236 1.06735 0.42147 73 2.40158 0.46407 2.42265 1.65016 295 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02776 4.13569 4.47556 1.09545 0.40705 1.09861 0.40547 74 2.56488 2.83967 0.21576 2.83532 297 G - - : 1.38629 1.38629 1.38629 1.38629 0.02751 4.30008 4.30008 1.46634 0.26236 1.09861 0.40547 75 4.03731 0.06358 4.53267 3.40506 298 C - - : 1.38629 1.38629 1.38629 1.38629 0.02751 4.30008 4.30008 1.46634 0.26236 1.09861 0.40547 76 4.03731 0.06358 4.53267 3.40506 299 C - - : 1.38629 1.38629 1.38629 1.38629 0.02751 4.30008 4.30008 1.46634 0.26236 1.09861 0.40547 77 0.05210 4.27684 3.91872 4.07392 300 A - - : 1.38629 1.38629 1.38629 1.38629 0.01385 4.28642 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Cys ACC bact-Cys-r2-022416 STATES 239 NODES 64 CLEN 75 W 991 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 13:13:06 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Cys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Cys-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Cys-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Cys-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4651 EFFN 4651.000000 CKSUM 744108839 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.7292 0.71878 ECMLC 0.69018 -7.93227 1.27861 1600000 691916 0.001734 ECMGC 0.35363 -32.31360 -21.14893 1600000 20735 0.019291 ECMLI 0.57232 -9.58759 1.41395 1600000 651161 0.001843 ECMGI 0.36646 -28.84585 -18.22041 1600000 19638 0.020369 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 991 2096 -17.110 -18.355 -0.625 -1.509 IL 1 1 2 1 4 30 53 994 2099 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 31 53 994 2100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 215 - A - - MR 3 2 3 5 3 32 53 993 2099 -17.894 -0.000 -16.211 2.000 -13.524 -12.784 -12.856 D 4 2 3 5 3 28 50 990 2096 -18.103 -13.281 -0.000 IR 5 5 3 5 3 31 53 993 2099 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 214 - C - - MR 6 5 3 8 3 31 52 992 2098 -17.894 -0.000 -16.211 -14.494 2.000 -15.592 -12.673 D 7 5 3 8 3 28 50 990 2096 -18.103 -13.281 -0.000 IR 8 8 3 8 3 31 52 992 2098 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 213 - C - - MR 9 8 3 11 3 30 51 991 2097 -17.894 -0.000 -16.211 -14.494 2.000 -15.592 -12.673 D 10 8 3 11 3 28 50 990 2096 -18.103 -0.000 -12.333 IR 11 11 3 11 3 24 44 991 2097 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 212 - U - - MR 12 11 3 14 5 30 50 990 2096 -5.941 -0.044 -16.973 -6.218 -18.077 -1.445 -4.844 -1.127 1.651 D 13 11 3 14 5 20 38 987 2093 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 27 49 991 2096 -1.329 -0.735 -12.286 -10.454 -11.560 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 209 G C - - MP 15 14 3 19 6 31 49 989 2095 -18.068 -6.881 -0.012 -16.783 -17.063 -17.458 -12.185 -10.281 -5.589 -0.050 -13.141 -11.264 -3.651 -12.698 -12.403 3.823 -12.649 -2.406 -0.773 -10.931 -10.213 -10.977 ML 16 14 3 19 6 21 40 986 2092 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 25 45 986 2092 -13.295 -12.024 -2.695 -12.003 -0.244 -10.216 -6.820 1.918 -7.242 -2.277 D 18 14 3 19 6 19 36 980 2086 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 22 41 988 2094 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 25 47 988 2094 -7.117 -0.016 -10.629 -8.796 -9.902 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 207 G C - - MP 21 20 6 25 6 30 47 987 2093 -18.071 -18.010 -0.000 -16.786 -17.066 -17.461 -12.317 -10.351 -12.153 0.680 -13.274 -11.295 0.529 -12.837 -12.495 3.587 -12.738 -0.388 -2.554 -10.990 -10.345 -11.118 ML 22 20 6 25 6 21 39 984 2090 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 25 45 985 2091 -13.060 -11.789 -2.750 -11.768 -0.235 -9.981 -7.300 1.992 -7.767 -6.337 D 24 20 6 25 6 19 36 979 2084 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 22 41 986 2092 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 22 41 986 2092 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 206 C G - - MP 27 26 6 31 6 28 45 985 2091 -18.073 -18.012 -0.004 -16.789 -8.692 -17.464 -13.970 -13.849 -13.692 0.107 -4.946 -14.168 3.358 -13.087 -13.659 1.478 -13.993 -11.595 0.858 -14.020 -4.794 -12.412 ML 28 26 6 31 6 21 39 982 2088 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 25 44 984 2090 -12.836 -11.565 -0.017 -11.543 -6.677 -9.757 -6.250 -8.007 1.991 -7.009 D 30 26 6 31 6 18 36 977 2083 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 22 40 984 2090 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 22 41 984 2089 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 205 g c - - MP 33 32 6 37 6 27 43 983 2089 -5.743 -18.023 -0.027 -16.799 -17.079 -17.474 -12.089 -5.320 -11.926 -0.224 -12.614 -12.543 2.355 -12.455 -12.298 2.989 -12.577 -0.479 -0.013 -11.808 -2.908 -2.171 ML 34 32 6 37 6 21 39 980 2086 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 22 39 979 2085 -10.887 -9.616 -5.525 -9.594 -0.043 -7.808 -2.275 -0.085 1.428 -2.642 D 36 32 6 37 6 18 35 976 2082 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 26 44 984 2090 -1.005 -1.006 -8.296 -12.033 -12.809 -12.470 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 25 42 982 2088 -8.241 -0.007 -11.752 -9.920 -11.026 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 203 c g - - MP 39 38 6 43 6 25 41 981 2087 -18.084 -18.023 -0.000 -16.799 -17.079 -17.474 -12.375 -11.997 -12.364 0.858 -11.297 -13.192 2.952 -11.930 -12.250 2.078 -12.752 -1.287 0.606 -12.527 -2.469 -3.119 ML 40 38 6 43 6 21 38 979 2085 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 21 38 978 2084 -10.887 -9.616 -1.639 -9.594 -0.575 -7.808 -5.012 1.959 -5.537 -4.102 D 42 38 6 43 6 18 35 975 2081 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 21 39 980 2086 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 21 39 980 2085 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 202 g c - - MP 45 44 6 49 6 23 39 979 2085 -4.393 -18.024 -0.070 -16.800 -17.080 -17.475 -12.298 -11.628 -12.247 0.563 -7.955 -5.709 1.978 -12.025 -12.254 2.686 -12.704 -0.376 1.147 -9.822 -0.018 -2.754 ML 46 44 6 49 6 20 37 977 2083 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 20 36 976 2082 -10.373 -9.102 -5.011 -9.081 -0.062 -7.294 -3.823 -3.482 -4.617 1.926 D 48 44 6 49 6 18 35 975 2080 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 22 38 978 2084 -10.465 -10.727 -0.003 -12.383 -13.159 -12.819 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 21 38 978 2084 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 201 G C - - MP 51 50 6 55 4 21 37 977 2083 -5.075 -17.520 -0.105 -4.635 -12.345 -10.985 -5.454 1.824 -13.347 -12.846 -0.895 -12.831 -12.560 3.225 -12.841 -3.085 1.278 -12.090 -10.430 -11.129 ML 52 50 6 55 4 19 36 976 2082 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 19 35 975 2081 -8.381 -7.410 -5.277 -0.051 1.951 -4.792 -4.248 -4.509 D 54 50 6 55 4 18 35 974 2080 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 20 37 977 2082 -1.237 -0.800 -9.339 -13.077 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 19 35 975 2081 -7.857 -7.213 -0.016 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - U - - - ML 57 56 6 59 3 19 35 975 2081 -18.118 -0.005 -8.152 -11.532 -5.316 -3.744 1.963 D 58 56 6 59 3 18 34 974 2080 -15.838 -0.001 -10.229 IL 59 59 3 59 3 19 36 975 2081 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - g - - - ML 60 59 3 62 2 18 34 974 2080 -18.876 -0.000 0.822 -2.123 0.957 -4.027 D 61 59 3 62 2 17 33 973 2079 -10.136 -0.001 IL 62 62 3 62 2 18 35 974 2080 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 17 33 973 2079 [ BEGR 45 ] - - - - - - S 64 63 1 65 3 0 2 939 2044 -18.225 -0.000 -16.879 IL 65 65 2 65 3 1 3 939 2045 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 71 - u - - - ML 66 65 2 68 3 1 2 939 2044 -18.225 -0.889 -1.120 -0.458 -0.933 -0.157 0.888 D 67 65 2 68 3 0 1 931 2037 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 2 949 2055 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 72 - A - - - ML 69 68 3 71 3 1 2 949 2055 -0.937 -1.066 -15.990 1.045 -4.139 0.022 -0.209 D 70 68 3 71 3 0 1 920 2025 -1.632 -0.562 -12.916 IL 71 71 3 71 3 1 2 987 2093 -0.024 -6.338 -7.908 0.000 0.000 0.000 0.000 [ MATL 48 ] 174 - U - - - ML 72 71 3 74 3 1 1 27 45 -6.612 -0.345 -2.303 -1.028 -1.788 -0.145 1.211 D 73 71 3 74 3 0 0 25 44 -16.441 -2.229 -0.346 IL 74 74 3 74 3 1 4 27 45 -6.194 -0.023 -8.894 0.000 0.000 0.000 0.000 [ MATL 49 ] 176 - A - - - ML 75 74 3 77 3 1 4 26 44 -17.779 -0.000 -16.433 1.517 -1.817 -2.582 -0.542 D 76 74 3 77 3 0 0 25 43 -17.734 -0.057 -4.680 IL 77 77 3 77 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 177 - C - - - ML 78 77 3 80 5 1 3 25 43 -17.143 -0.013 -16.958 -6.757 -18.062 -1.896 1.107 -0.653 -0.086 D 79 77 3 80 5 0 0 23 40 -11.023 -6.867 -10.284 -8.659 -0.018 IL 80 80 3 80 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 178 199 c g - - MP 81 80 3 85 6 2 4 24 42 -18.059 -4.804 -0.053 -16.774 -17.054 -17.449 -12.297 -11.075 -12.150 1.555 -9.868 -12.804 2.572 -12.552 -12.454 2.015 -4.233 1.211 -0.515 -12.078 -9.843 -11.040 ML 82 80 3 85 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 23 42 -12.750 -11.479 -7.388 -11.457 -0.012 -9.671 -7.434 -6.703 -8.407 1.993 D 84 80 3 85 6 0 0 22 40 -15.526 -14.224 -0.572 -10.704 -10.721 -1.618 IL 85 85 5 85 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 23 41 -9.143 -0.004 -12.654 -10.822 -11.928 0.000 0.000 0.000 0.000 [ MATP 52 ] 179 197 C G - - MP 87 86 6 91 6 2 2 22 40 -6.484 -7.790 -0.023 -13.090 -17.065 -17.460 -4.239 -8.768 -12.366 -2.071 -1.781 -13.210 3.231 -11.884 -12.224 0.550 -12.737 -4.364 1.582 -12.548 0.350 -2.035 ML 88 86 6 91 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 22 41 -12.750 -0.026 -7.388 -11.457 -6.591 -9.671 -6.948 1.989 -7.406 -6.012 D 90 86 6 91 6 0 0 22 40 -13.918 -12.617 -8.414 -0.047 -9.113 -5.189 IL 91 91 5 91 6 1 1 21 39 -8.378 -8.641 -0.011 -10.296 -11.072 -10.732 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 21 39 -7.796 -0.010 -11.308 -9.475 -10.581 0.000 0.000 0.000 0.000 [ MATP 53 ] 181 195 C G - - MP 93 92 6 97 6 2 2 20 38 -18.082 -18.021 -0.000 -16.798 -17.078 -17.473 -12.444 -2.787 -12.438 0.329 -11.297 -13.271 3.015 -11.953 -6.220 1.355 -12.807 -9.716 1.952 -12.624 -3.840 -11.018 ML 94 92 6 97 6 1 1 22 40 -10.827 -11.173 -4.434 -0.075 -11.023 -8.553 -5.510 1.971 -5.986 -4.616 MR 95 92 6 97 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 182 194 G C - - MP 99 98 6 103 6 2 2 18 36 -7.199 -7.282 -0.019 -16.798 -17.078 -17.473 -15.295 -5.304 -15.867 0.203 -4.837 -14.046 -1.319 -15.677 -13.993 3.839 -14.247 -10.541 -3.662 -14.367 -13.016 -14.667 ML 100 98 6 103 6 1 1 21 39 -10.784 -11.130 -0.038 -5.539 -10.980 -8.510 -4.872 -6.502 1.976 -5.610 MR 101 98 6 103 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 18 37 -7.692 -7.955 -0.017 -9.610 -10.386 -10.046 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 19 37 -6.748 -0.021 -10.259 -8.427 -9.533 0.000 0.000 0.000 0.000 [ MATP 55 ] 184 192 G C - - MP 105 104 6 109 4 2 2 15 34 -17.316 -17.523 -0.000 -15.937 -16.011 -6.104 -18.302 -3.422 -17.647 -13.809 -11.946 -17.772 -14.012 3.990 -14.205 -10.575 -12.309 -14.275 -14.395 -17.375 ML 106 104 6 109 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 185 - U - - - ML 111 110 6 113 3 1 1 13 31 -18.225 -0.000 -16.879 -15.536 -14.141 -17.134 2.000 D 112 110 6 113 3 0 0 19 37 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 186 - U - - - ML 114 113 3 116 3 1 1 12 30 -18.225 -0.000 -16.879 -11.768 -5.235 -4.863 1.978 D 115 113 3 116 3 0 0 18 36 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 187 - C - - - ML 117 116 3 119 3 1 1 10 29 -18.225 -0.000 -16.879 -14.138 1.983 -14.720 -4.458 D 118 116 3 119 3 0 0 17 35 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 188 - G - - - ML 120 119 3 122 3 1 1 9 27 -18.225 -0.000 -16.879 0.642 -13.286 1.287 -13.129 D 121 119 3 122 3 0 0 16 34 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 189 - A - - - ML 123 122 3 125 3 1 1 8 26 -18.225 -0.000 -16.879 2.000 -14.146 -13.412 -13.477 D 124 122 3 125 3 0 0 15 33 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 190 - a - - - ML 126 125 3 128 3 1 1 6 24 -18.225 -0.000 -13.605 0.835 -0.389 -0.770 -0.208 D 127 125 3 128 3 0 0 13 32 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 191 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -6.747 -3.055 -12.390 1.952 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 7 19 65 104 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 182 7 19 65 104 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 5 26 40 -0.007 -16.217 -7.949 -10.326 [ MATP 18 ] 15 36 G C - - MP 136 135 1 140 6 2 6 26 40 -6.679 -18.019 -0.039 -16.796 -5.898 -17.471 -4.604 -5.026 -5.543 -0.210 -12.994 -7.407 -0.250 -12.553 -12.301 3.775 -12.547 -1.626 -2.571 -11.717 -10.068 -6.656 ML 137 135 1 140 6 1 3 25 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 1 4 25 39 -11.601 -10.330 -0.536 -10.308 -1.710 -8.521 -5.740 1.976 -6.203 -4.848 D 139 135 1 140 6 0 2 22 36 -11.965 -10.663 -6.460 -7.142 -7.160 -0.038 IL 140 140 5 140 6 1 6 24 38 -8.197 -8.460 -6.378 -0.028 -10.892 -10.552 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 4 26 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 35 C G - - MP 142 141 6 146 6 2 7 24 38 -18.046 -17.985 -0.000 -16.761 -17.041 -17.436 -12.804 -12.536 -12.749 -1.253 -8.576 -13.506 3.781 -12.240 -12.629 -1.525 -7.388 -1.347 -0.303 -12.962 -1.887 -11.356 ML 143 141 6 146 6 1 5 23 37 -12.298 -12.644 -0.013 -7.053 -12.494 -10.024 1.993 -7.730 -7.017 -7.160 MR 144 141 6 146 6 1 3 22 36 -13.705 -12.434 -3.754 -12.412 -0.113 -10.626 -1.883 1.891 -7.195 -6.303 D 145 141 6 146 6 0 2 22 36 -11.965 -10.663 -0.186 -7.142 -7.160 -3.235 IL 146 146 5 146 6 1 3 25 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 3 24 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 34 g c - - MP 148 147 6 152 6 2 5 22 36 -18.063 -18.002 -0.032 -16.779 -5.744 -8.237 -12.253 -7.374 -12.184 1.604 -3.641 -12.926 2.402 -12.056 -12.242 2.652 -12.670 -3.129 -0.569 -12.230 -0.963 -10.901 ML 149 147 6 152 6 1 3 22 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 2 20 34 -13.599 -12.328 -8.237 -12.306 -3.708 -0.121 -4.846 1.108 0.572 -1.628 D 151 147 6 152 6 0 1 20 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 3 23 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 3 22 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 33 g a - - MP 154 153 6 158 4 2 3 20 34 -17.260 -17.467 -0.000 -15.881 2.146 -15.370 -6.192 -2.251 -9.115 -14.550 0.660 0.762 2.913 -11.578 -3.667 -13.773 -2.057 -14.923 -3.754 -2.740 ML 155 153 6 158 4 1 2 22 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 4 1 2 20 34 -11.856 -0.524 -2.256 -3.396 -1.700 0.338 0.653 -0.223 D 157 153 6 158 4 0 1 18 33 -11.798 -11.479 -0.284 -2.491 IL 158 158 5 158 4 1 2 23 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 2 19 33 -6.763 -0.015 -9.463 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - A - - - ML 160 159 6 162 3 1 1 18 32 -18.218 -0.091 -4.037 1.951 -4.476 -4.805 -4.211 D 161 159 6 162 3 0 1 17 34 -12.037 -0.017 -6.428 IL 162 162 3 162 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 163 162 3 165 3 1 3 17 31 -18.135 -0.000 -16.789 -0.113 -2.240 1.428 -2.538 D 164 162 3 165 3 0 0 16 31 -15.601 -0.583 -1.589 IL 165 165 3 165 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - u - - - ML 166 165 3 168 3 1 2 16 29 -3.044 -0.186 -16.850 -0.150 -0.762 -0.608 0.890 D 167 165 3 168 3 0 0 14 29 -14.014 -0.004 -8.406 IL 168 168 3 168 3 1 1 16 30 -2.320 -0.323 -12.870 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 169 168 3 171 3 1 2 14 28 -18.225 -0.000 -16.879 -3.406 -2.346 1.804 -2.205 D 170 168 3 171 3 0 0 16 35 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 172 171 3 174 3 1 1 13 26 -18.225 -0.012 -6.897 -1.515 -13.736 1.835 -3.593 D 173 171 3 174 3 0 0 15 34 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 175 174 3 177 3 1 1 12 23 -1.331 -0.731 -16.867 -1.586 0.000 -4.514 1.391 D 176 174 3 177 3 0 0 6 17 -12.761 -0.010 -7.152 IL 177 177 3 177 3 1 1 11 23 -2.350 -0.315 -14.590 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - a - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 0.584 -1.936 0.082 0.240 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 182 134 1 183 3 0 5 50 88 -18.225 -0.000 -16.879 IL 183 183 2 183 3 1 1 52 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 37 - a - - - ML 184 183 2 186 5 1 6 50 88 -17.158 -0.000 -16.973 -17.186 -18.077 0.985 -1.489 0.633 -3.140 D 185 183 2 186 5 0 0 48 86 -4.959 -0.803 -4.221 -2.596 -2.508 IL 186 186 3 186 5 1 1 50 88 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 38 70 g u - - MP 187 186 3 191 6 2 7 49 87 -18.087 -18.026 -0.000 -16.803 -17.083 -17.478 -9.656 -6.989 -3.972 1.976 -4.508 -5.413 1.321 -0.490 -9.918 1.497 -2.897 2.079 0.191 -5.392 -4.833 -1.587 ML 188 186 3 191 6 1 1 47 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 47 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 43 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 48 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 48 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 69 c g - - MP 193 192 6 197 6 2 6 47 85 -7.284 -4.328 -0.083 -16.803 -17.083 -17.478 -12.373 -12.015 -12.365 1.511 -11.281 -8.949 2.807 -11.919 -12.244 1.357 -12.749 0.264 0.316 -9.241 0.071 -3.467 ML 194 192 6 197 6 1 1 45 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 44 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 41 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 4 46 84 -7.614 -7.877 -0.018 -9.532 -10.309 -9.969 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 5 46 84 -9.644 -0.003 -13.155 -11.323 -12.429 0.000 0.000 0.000 0.000 [ MATP 34 ] 41 67 G C - - MP 199 198 6 203 6 2 4 45 83 -2.940 -18.026 -0.201 -16.803 -17.083 -17.478 -12.052 -5.742 -11.870 1.633 -13.000 -12.465 0.613 -0.078 -5.795 3.247 -12.554 -0.645 -2.109 -11.724 -5.951 -7.606 ML 200 198 6 203 6 1 1 42 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 42 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 39 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 3 44 82 -11.916 -0.696 -1.386 -13.834 -14.610 -14.270 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 3 43 82 -10.333 -0.002 -13.844 -12.012 -13.118 0.000 0.000 0.000 0.000 [ MATP 35 ] 43 65 G C - - MP 205 204 6 209 6 2 2 42 81 -18.087 -18.026 -0.028 -16.803 -17.083 -5.727 -13.323 -11.776 -13.221 -1.347 -13.963 -13.448 1.032 -13.702 -13.225 3.678 -13.496 -1.091 -3.421 -12.980 -2.308 -12.148 ML 206 204 6 209 6 1 1 40 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 40 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 36 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 42 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 41 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 44 64 c g - - MP 211 210 6 215 4 2 4 40 79 -1.756 -17.495 -0.506 -15.909 -12.360 -3.943 -12.359 1.686 -8.745 -4.782 2.544 -11.878 -2.283 1.398 -12.731 -9.627 1.935 -12.542 -2.483 -10.937 ML 212 210 6 215 4 1 1 37 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 36 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 214 210 6 215 4 0 0 25 63 -11.814 -11.495 -9.511 -0.003 IL 215 215 5 215 4 1 2 41 79 -1.427 -0.671 -12.502 -16.240 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 39 77 -0.695 -11.878 -1.388 0.000 0.000 0.000 0.000 [ MATL 37 ] 48 - C - - - ML 217 216 6 219 3 1 2 13 31 -17.691 -0.000 -16.345 -4.147 1.620 -11.656 -0.201 D 218 216 6 219 3 0 0 11 30 -17.951 -13.464 -0.000 IL 219 219 3 219 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - U - - - ML 220 219 3 222 3 1 1 12 30 -17.691 -0.000 -16.345 -7.986 -3.122 -5.188 1.946 D 221 219 3 222 3 0 0 11 29 -17.951 -0.000 -12.343 IL 222 222 3 222 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - u - - - ML 223 222 3 225 3 1 1 10 29 -18.225 -0.000 -16.879 -0.215 -0.279 -0.097 0.463 D 224 222 3 225 3 0 0 17 35 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 51 - g - - - ML 226 225 3 228 3 1 1 9 27 -18.225 -0.000 -16.879 -0.349 -0.284 0.401 0.102 D 227 225 3 228 3 0 0 16 34 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 52 - c - - - ML 229 228 3 231 3 1 1 8 26 -18.225 -0.000 -16.879 -0.563 0.707 -0.075 -0.432 D 230 228 3 231 3 0 0 15 33 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 53 - A - - - ML 232 231 3 234 3 1 1 6 24 -18.225 -0.008 -7.421 1.888 -2.068 -4.706 -5.456 D 233 231 3 234 3 0 0 13 32 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 54 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.877 -1.934 -4.321 -6.078 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Cys ACC bact-Cys-r2-022416 LENG 75 MAXL 980 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 13:13:07 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Cys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Cys-r2-022416.sto NSEQ 4651 EFFN 50.161514 CKSUM 744108839 STATS LOCAL MSV -8.1211 0.71878 STATS LOCAL VITERBI -9.3827 0.71878 STATS LOCAL FORWARD -3.2653 0.71878 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53752 1.29224 1.24518 1.50262 1.38629 1.38629 1.38629 1.38629 0.00427 6.15191 6.15191 1.46634 0.26236 0.00000 * 1 2.43609 3.83016 0.17445 2.97846 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00427 6.15191 6.15191 1.46634 0.26236 1.09861 0.40547 2 2.12238 2.38327 0.27765 3.49180 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00426 6.15388 6.15388 1.46634 0.26236 1.09861 0.40547 3 2.54679 0.51301 1.73520 1.91998 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00657 6.15549 5.42090 1.46634 0.26236 1.09861 0.40547 4 2.50160 1.24465 0.63108 2.32289 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02229 3.91508 6.16252 0.76754 0.62391 1.40723 0.28080 5 2.12363 0.78530 1.27736 1.92658 7 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00422 6.16252 6.16252 1.46634 0.26236 1.10853 0.40054 6 2.22578 1.39971 0.84532 1.53281 8 g - - ( 1.38629 1.38629 1.38629 1.38629 0.05095 3.04564 6.16326 0.08629 2.49289 1.31815 0.31147 7 1.50998 3.05095 0.53551 1.92143 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.06558 3.77306 3.20670 0.17412 1.83383 1.31815 0.31147 8 4.59099 4.09640 3.79569 0.05050 13 U - - , 1.38629 1.38629 1.38629 1.38629 0.00764 6.12411 5.21656 1.46634 0.26236 0.09545 2.39645 9 0.84878 2.79306 0.72773 3.58186 14 g - - , 1.38629 1.38629 1.38629 1.38629 0.00885 6.16169 5.00579 1.46634 0.26236 0.59168 0.80609 10 2.42264 2.76923 0.20276 3.43804 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03000 4.47153 4.01045 0.33577 1.25453 0.81578 0.58392 11 3.09972 0.24513 2.69879 2.25334 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.00429 6.14684 6.14684 1.46634 0.26236 1.78199 0.18429 12 1.68072 1.13006 0.95652 2.23943 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.02555 6.14883 3.76822 1.46634 0.26236 2.35514 0.09969 13 1.26419 1.53644 0.77673 3.15872 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.00437 6.12765 6.12765 1.46634 0.26236 0.23661 1.55731 14 0.05277 4.05713 4.24251 3.92530 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06434 6.15998 2.81001 1.46634 0.26236 0.47516 0.97229 15 1.49416 2.84415 0.41096 2.91202 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00447 6.10525 6.10525 1.46634 0.26236 0.45389 1.00827 16 1.43711 1.86807 1.78817 0.81939 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.12767 2.13948 6.14542 0.24971 1.50970 0.18020 1.80242 17 3.20513 2.93501 0.16818 2.79504 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 18 2.43403 5.23340 0.12601 3.67411 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01228 6.16480 4.59507 1.46634 0.26236 1.09861 0.40547 19 2.41266 1.40028 3.96180 0.43871 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.48329 0.96461 6.15677 0.22653 1.59600 0.34798 1.22456 20 1.00806 2.47531 1.37200 1.21289 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03572 4.18910 3.91575 0.25744 1.48293 1.09861 0.40547 21 0.31291 4.79207 2.04826 2.02930 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.00429 6.14682 6.14682 1.46634 0.26236 0.19144 1.74735 22 2.56881 0.99284 1.04462 1.60433 34 c - - > 1.38629 1.38629 1.38629 1.38629 0.01431 6.16480 4.41379 1.46634 0.26236 1.09861 0.40547 23 2.49100 3.01931 0.22774 2.63098 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.00426 6.15475 6.15475 1.46634 0.26236 0.36036 1.19544 24 3.54355 0.23715 2.68754 2.17011 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.00422 6.16407 6.16407 1.46634 0.26236 0.90970 0.51525 25 0.73003 2.38012 0.96803 3.08492 37 a - - , 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 26 1.41152 1.54231 0.93794 1.89108 38 g - - < 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 27 1.75243 0.87003 1.46765 1.73024 39 c - - < 1.38629 1.38629 1.38629 1.38629 0.01039 4.79995 6.16480 0.45042 1.01435 1.09861 0.40547 28 1.61802 1.92821 0.47760 3.32332 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.13770 2.06723 6.16480 0.03290 3.43066 1.09861 0.40547 29 2.85223 2.09097 0.24628 3.29655 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.02248 6.16480 3.90565 1.46634 0.26236 1.09861 0.40547 30 1.62320 1.02728 1.70119 1.33831 44 c - - < 1.38629 1.38629 1.38629 1.38629 0.18272 1.80266 6.14661 0.05130 2.99562 2.44885 0.09035 31 3.52858 0.29504 4.75481 1.52538 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.33744 6.14661 1.25786 1.46634 0.26236 2.44885 0.09035 32 4.24136 3.24723 4.26907 0.06963 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00598 5.81516 5.81516 1.46634 0.26236 0.01405 4.27223 33 1.47265 1.58876 1.48486 1.07890 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 34 1.54796 1.59416 1.17207 1.29275 51 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 35 1.67786 0.96537 1.47670 1.58965 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 36 0.09731 2.78990 4.12405 4.19201 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00981 6.16480 4.87137 1.46634 0.26236 1.09861 0.40547 37 0.10408 2.71068 3.96292 4.31631 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.35446 1.27047 4.03154 0.96441 0.47999 0.82837 0.57405 38 1.37756 1.76592 0.97969 1.60271 64 g - - > 1.38629 1.38629 1.38629 1.38629 0.00429 6.14661 6.14661 1.46634 0.26236 0.18969 1.75570 39 3.82461 0.29197 1.98095 2.37037 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.08456 2.53858 6.16480 0.05241 2.97478 1.09861 0.40547 40 3.49040 0.55071 2.27762 1.23634 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.05315 3.00257 6.16480 0.08261 2.53462 1.09861 0.40547 41 2.23371 1.81621 0.72807 1.39680 69 g - - > 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 42 2.12871 1.68600 1.58887 0.71010 70 u - - > 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 43 1.60619 1.96458 1.52156 0.81925 71 u - - , 1.38629 1.38629 1.38629 1.38629 0.35885 6.16481 1.20591 1.46634 0.26236 1.09861 0.40547 44 0.73547 2.98163 1.42439 1.47249 72 a - - , 1.38629 1.38629 1.38629 1.38629 0.89277 0.53190 5.81196 4.09088 0.01687 0.01394 4.27969 45 1.90865 2.40797 1.52562 0.60837 174 U - - , 1.38629 1.38629 1.38629 1.38629 0.31025 4.52891 1.36280 0.35240 1.21403 1.09861 0.40547 46 0.38075 2.48817 2.87668 1.73007 176 A - - , 1.38629 1.38629 1.38629 1.38629 0.00565 5.87199 5.87199 1.46634 0.26236 0.05552 2.91864 47 2.44712 0.66358 1.87126 1.40845 177 C - - , 1.38629 1.38629 1.38629 1.38629 0.01315 6.15491 4.51555 1.46634 0.26236 2.03909 0.13943 48 1.68646 1.09016 0.89253 2.67304 178 g - - < 1.38629 1.38629 1.38629 1.38629 0.00429 6.14606 6.14606 1.46634 0.26236 1.04016 0.43603 49 3.23070 0.57853 2.19831 1.24218 179 C - - < 1.38629 1.38629 1.38629 1.38629 0.01503 4.35896 6.15285 0.30478 1.33669 0.26284 1.46474 50 2.33331 0.73758 1.79549 1.35206 181 c - - < 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 51 2.36143 3.24487 0.17007 3.76650 182 G - - < 1.38629 1.38629 1.38629 1.38629 0.01074 4.75848 6.16480 0.43395 1.04397 1.09861 0.40547 52 4.40351 6.11189 0.01688 6.08091 184 G - - < 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 53 6.80624 6.25839 7.50669 0.00358 185 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 54 4.68272 4.13065 4.32620 0.03931 186 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 55 5.99103 0.01896 6.25198 4.24384 187 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 56 0.92275 5.74310 0.51824 5.57257 188 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 57 0.00443 6.84312 6.34344 6.44013 189 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 58 0.85373 1.65645 1.88070 1.46586 190 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00428 6.16480 6.13265 1.46634 0.26236 1.09861 0.40547 59 4.58264 3.31966 5.29955 0.05275 191 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00421 6.16474 6.16474 1.46634 0.26236 1.07729 0.41630 60 5.97340 0.01929 5.96332 4.26967 192 C - - > 1.38629 1.38629 1.38629 1.38629 0.01357 4.80158 5.24813 0.45107 1.01320 1.09861 0.40547 61 3.87020 0.18046 3.19929 2.26846 194 C - - > 1.38629 1.38629 1.38629 1.38629 0.00433 6.16164 6.11524 1.46634 0.26236 1.50429 0.25125 62 1.40539 1.78550 0.71217 2.33889 195 g - - > 1.38629 1.38629 1.38629 1.38629 0.01740 4.19059 6.16154 0.25858 1.47904 1.46839 0.26175 63 1.53012 2.24336 0.48223 2.81368 197 G - - > 1.38629 1.38629 1.38629 1.38629 0.04557 3.33172 4.73070 0.11412 2.22701 1.50429 0.25125 64 2.76631 1.27975 1.07103 1.15093 199 g - - > 1.38629 1.38629 1.38629 1.38629 0.03333 3.48476 6.15491 0.13316 2.08207 0.30150 1.34595 65 1.95665 0.56580 2.94103 1.43568 201 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 66 1.90434 0.95965 1.19173 1.80573 202 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 67 2.11786 1.37846 0.74771 1.86889 203 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02224 3.91736 6.16480 0.19940 1.71050 1.09861 0.40547 68 2.60226 0.72234 1.20385 1.96438 205 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 69 1.98841 1.76559 0.49860 2.46957 206 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00421 6.16480 6.16480 1.46634 0.26236 1.09861 0.40547 70 3.63098 0.34771 2.34166 1.76588 207 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01227 4.59581 6.16480 0.37456 1.16344 1.09861 0.40547 71 3.04812 0.20350 3.59700 2.21388 209 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01993 4.03836 6.16480 0.62523 0.76601 1.09861 0.40547 72 2.36263 3.87654 2.22211 0.25267 212 U - - : 1.38629 1.38629 1.38629 1.38629 0.13673 5.88691 2.07928 1.46634 0.26236 1.09861 0.40547 73 5.91531 0.00980 6.22805 5.28318 213 C - - : 1.38629 1.38629 1.38629 1.38629 0.00634 5.75652 5.75652 1.46634 0.26236 3.85107 0.02149 74 5.91531 0.00980 6.22805 5.28318 214 C - - : 1.38629 1.38629 1.38629 1.38629 0.00634 5.75652 5.75652 1.46634 0.26236 3.85107 0.02149 75 0.00662 6.41611 5.94370 6.05539 215 A - - : 1.38629 1.38629 1.38629 1.38629 0.00318 5.75335 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-fMet ACC bact-fMet-r2-022416 STATES 245 NODES 66 CLEN 77 W 264 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 18:34:08 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-fMet-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-fMet-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-fMet-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-fMet-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8454 EFFN 8454.000000 CKSUM 4201036437 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.9084 0.71912 ECMLC 0.61387 -9.21750 1.31711 1600000 772181 0.001554 ECMGC 0.33840 -33.75687 -19.98687 1600000 42242 0.009469 ECMLI 0.58062 -9.57882 1.42596 1600000 714711 0.001679 ECMGI 0.34864 -30.94695 -17.78915 1600000 39292 0.010180 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 264 510 -17.971 -19.217 -0.444 -1.916 IL 1 1 2 1 4 13 34 266 511 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 35 266 512 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 199 - A - - MR 3 2 3 5 3 16 35 265 511 -18.936 -0.000 -17.253 2.000 -14.562 -13.833 -13.893 D 4 2 3 5 3 11 31 262 507 -18.558 -13.736 -0.000 IR 5 5 3 5 3 13 35 265 511 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 198 - C - - MR 6 5 3 8 3 15 34 264 510 -7.090 -0.016 -8.012 -15.677 2.000 -16.909 -13.754 D 7 5 3 8 3 11 31 262 507 -18.558 -13.736 -0.000 IR 8 8 3 8 3 16 34 264 510 -7.162 -0.012 -9.401 0.000 0.000 0.000 0.000 [ MATR 3 ] - 196 - C - - MR 9 8 3 11 3 15 33 263 509 -7.084 -0.011 -17.248 -15.671 2.000 -16.902 -13.749 D 10 8 3 11 3 11 31 262 507 -18.574 -0.299 -2.416 IR 11 11 3 11 3 14 33 263 509 -7.163 -0.012 -9.401 0.000 0.000 0.000 0.000 [ MATR 4 ] - 194 - A - - MR 12 11 3 14 5 14 32 262 508 -8.454 -0.218 -5.873 -3.052 -18.865 1.951 -6.669 -3.353 -5.276 D 13 11 3 14 5 10 29 260 506 -4.109 -1.922 -11.913 -0.688 -4.135 IR 14 14 3 14 5 13 31 261 507 -7.393 -1.033 -10.904 -0.989 -10.177 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 192 C A - - MP 15 14 3 19 6 15 31 261 507 -18.684 -18.623 -0.041 -17.399 -5.164 -18.074 -0.928 -15.192 -1.767 -7.163 3.358 -15.407 -9.332 1.262 -10.586 -11.620 -15.263 -3.674 1.271 -15.657 -5.155 -13.890 ML 16 14 3 19 6 11 31 260 506 -13.883 -14.229 -8.943 -0.004 -14.079 -11.608 -7.722 -9.496 1.997 -8.483 MR 17 14 3 19 6 12 30 260 506 -17.608 -16.337 -0.118 -16.316 -3.677 -14.529 -0.058 0.330 -9.654 0.833 D 18 14 3 19 6 8 25 259 505 -14.544 -13.242 -0.030 -9.721 -9.739 -5.814 IL 19 19 5 19 6 9 25 260 506 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 9 25 260 506 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 191 G C - - MP 21 20 6 25 6 15 30 259 505 -7.319 -18.812 -0.038 -17.588 -5.675 -18.263 -16.698 -2.351 -18.615 -2.966 -18.386 -14.630 -12.731 -18.234 -14.794 3.934 -14.999 -1.342 -13.081 -15.084 -15.160 -17.530 ML 22 20 6 25 6 11 30 259 505 -13.883 -0.007 -8.943 -8.638 -14.079 -11.608 -10.009 -8.867 -11.300 1.999 MR 23 20 6 25 6 12 26 256 502 -15.517 -14.246 -2.783 -14.224 -0.227 -12.438 -1.715 1.123 -7.482 0.596 D 24 20 6 25 6 7 19 252 498 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 11 29 258 504 -8.347 -8.610 -0.011 -10.265 -11.041 -10.702 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 11 29 258 504 -8.892 -0.005 -12.403 -10.570 -11.676 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 189 C G - - MP 27 26 6 31 6 14 28 257 503 -5.090 -18.816 -0.073 -17.592 -5.644 -18.267 -15.935 -16.217 -15.253 -12.454 -7.729 -15.397 3.937 -14.518 -15.356 -12.426 -0.808 -14.621 -3.724 -15.769 -4.983 -14.158 ML 28 26 6 31 6 9 23 255 501 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 12 25 255 501 -1.875 -14.719 -2.977 -14.697 -0.737 -12.911 -9.708 -10.741 1.545 0.112 D 30 26 6 31 6 7 19 251 496 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 12 28 256 502 -11.116 -1.643 -0.558 -13.034 -13.810 -13.470 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 11 28 256 502 -8.600 -0.006 -12.111 -10.278 -11.384 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 187 G C - - MP 33 32 6 37 6 13 27 255 501 -5.545 -7.365 -0.085 -17.593 -5.070 -18.268 -16.825 -13.433 -19.233 1.316 -18.448 -4.436 -12.736 -18.652 -14.803 3.743 -5.400 -11.369 -4.351 -15.060 -15.190 -18.369 ML 34 32 6 37 6 8 23 253 499 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 11 23 252 498 -15.981 -14.710 -9.871 -14.688 -0.002 -12.902 -10.951 1.999 -11.650 -9.564 D 36 32 6 37 6 7 19 250 496 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 11 26 254 500 -10.107 -10.370 -0.003 -12.025 -12.801 -12.461 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 10 26 254 500 -7.432 -0.013 -10.943 -9.111 -10.217 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 185 G C - - MP 39 38 6 43 6 14 25 253 499 -5.953 -6.506 -0.040 -17.549 -13.614 -18.224 -15.315 -13.487 -15.662 -2.606 -17.532 -15.871 -2.263 -15.681 -14.680 3.934 -15.171 -1.660 -12.745 -15.742 -14.699 -5.267 ML 40 38 6 43 6 8 22 252 497 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 10 22 251 497 -16.649 -15.378 -11.287 -15.356 -0.001 -13.570 -11.801 2.000 -12.584 -10.299 D 42 38 6 43 6 7 19 249 495 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 11 25 253 499 -9.658 -0.298 -2.439 -11.576 -12.352 -12.013 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 11 24 253 498 -1.506 -0.628 -13.488 -11.656 -12.762 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 182 G C - - MP 45 44 6 49 6 12 23 251 497 -7.322 -7.391 -0.033 -6.591 -17.829 -18.224 -13.597 -12.082 -13.477 0.064 -14.581 -3.893 -0.444 -14.111 -13.631 3.799 -6.472 -3.533 -9.916 -13.234 -2.961 -6.774 ML 46 44 6 49 6 8 21 250 496 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 9 21 250 496 -16.650 -15.379 -0.828 -15.357 -1.196 -13.571 -11.802 2.000 -12.586 -10.300 D 48 44 6 49 6 7 18 249 494 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 10 22 250 496 -8.306 -8.569 -0.011 -10.224 -11.000 -10.660 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 10 22 250 496 -7.364 -0.014 -10.875 -9.043 -10.149 0.000 0.000 0.000 0.000 [ MATP 11 ] 12 180 G C - - MP 51 50 6 55 4 10 21 249 495 -3.984 -18.321 -0.094 -16.736 -13.412 -8.607 -13.348 2.213 -14.248 -14.003 -10.103 -6.402 -5.861 3.432 -13.765 -1.018 -4.447 -13.415 -11.994 -12.405 ML 52 50 6 55 4 9 21 250 496 -0.161 -10.399 -3.277 -9.129 -6.689 1.857 -1.495 -6.193 MR 53 50 6 55 4 8 20 249 495 -1.916 -12.511 -1.294 -1.613 -1.268 1.840 -9.178 -8.204 D 54 50 6 55 4 6 18 248 494 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 8 20 249 495 -1.095 -4.080 -1.164 -5.238 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 9 20 248 494 -6.960 -0.013 -9.660 0.000 0.000 0.000 0.000 [ MATL 12 ] 16 - U - - - ML 57 56 6 59 3 8 19 247 493 -5.340 -0.038 -9.354 -6.554 -3.541 -7.356 1.962 D 58 56 6 59 3 6 18 249 495 -0.571 -9.943 -1.619 IL 59 59 3 59 3 8 20 251 496 -0.396 -2.058 -13.676 0.000 0.000 0.000 0.000 [ MATL 13 ] 22 - G - - - ML 60 59 3 62 2 7 18 246 492 -19.734 -0.000 0.112 -14.620 1.545 -14.150 D 61 59 3 62 2 6 17 245 491 -11.587 -0.000 IL 62 62 3 62 2 7 18 246 492 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 6 17 245 491 [ BEGR 47 ] - - - - - - S 64 63 1 65 3 0 5 211 457 -19.087 -0.003 -8.834 IL 65 65 2 65 3 1 6 212 458 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 107 - A - - - ML 66 65 2 68 3 1 6 211 457 -4.611 -0.060 -17.738 1.984 -14.957 -4.487 -14.325 D 67 65 2 68 3 0 3 209 455 -11.700 -0.022 -6.092 IL 68 68 3 68 3 1 6 221 466 -0.193 -2.997 -14.867 0.000 0.000 0.000 0.000 [ MATL 49 ] 116 - G - - - ML 69 68 3 71 3 1 5 209 455 -3.224 -0.163 -17.741 -2.878 -3.691 1.903 -4.390 D 70 68 3 71 3 0 1 181 427 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 238 484 -0.108 -3.975 -6.862 0.000 0.000 0.000 0.000 [ MATL 50 ] 137 - G - - - ML 72 71 3 74 3 1 5 151 326 -19.068 -0.002 -9.481 -1.749 -15.349 1.888 -14.334 D 73 71 3 74 3 0 1 144 319 -14.217 -9.730 -0.002 IL 74 74 3 74 3 1 3 152 326 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 138 - U - - - ML 75 74 3 77 3 1 4 150 325 -19.066 -0.011 -7.025 -4.981 -0.995 -5.658 1.785 D 76 74 3 77 3 0 1 144 319 -14.365 -3.347 -0.149 IL 77 77 3 77 3 1 3 151 325 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 139 - C - - - ML 78 77 3 80 5 1 5 149 324 -5.190 -0.040 -17.806 -18.018 -18.909 -5.193 1.958 -13.560 -3.539 D 79 77 3 80 5 0 1 143 318 -12.846 -8.690 -0.678 -1.428 -10.395 IL 80 80 3 80 5 1 3 149 324 -9.612 -0.003 -11.291 -13.123 -12.397 0.000 0.000 0.000 0.000 [ MATP 53 ] 141 178 G C - - MP 81 80 3 85 6 2 5 148 323 -18.919 -18.858 -0.000 -17.634 -17.914 -18.309 -15.162 -5.689 -15.365 -0.077 -16.609 -14.873 -2.556 -15.718 -14.534 3.621 -14.858 1.207 -2.013 -14.770 -13.663 -14.190 ML 82 80 3 85 6 1 2 147 322 -13.538 -13.884 -0.006 -8.293 -13.734 -11.263 -7.394 -9.167 1.996 -8.156 MR 83 80 3 85 6 1 2 113 287 -13.329 -12.058 -7.967 -12.036 -0.008 -10.250 1.995 -8.202 -7.465 -7.596 D 84 80 3 85 6 0 0 161 335 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 151 325 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 149 323 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 142 177 c g - - MP 87 86 6 91 6 2 3 146 321 -3.106 -11.785 -0.202 -9.365 -6.284 -18.328 -13.235 -12.936 -13.235 0.140 -9.055 -14.079 2.998 -12.754 -13.093 -0.127 -13.607 -1.168 0.716 -9.622 1.958 -5.896 ML 88 86 6 91 6 1 1 162 336 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 2 107 282 -13.329 -12.058 -7.967 -12.036 -0.008 -10.250 -7.613 1.993 -8.091 -6.624 D 90 86 6 91 6 0 0 162 337 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 3 164 339 -12.599 -0.531 -1.700 -14.517 -15.293 -14.954 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 2 167 341 -11.185 -7.617 -0.008 -12.863 -13.969 0.000 0.000 0.000 0.000 [ MATP 55 ] 144 175 A U - - MP 93 92 6 97 6 2 4 86 261 -18.794 -18.733 -0.020 -17.509 -6.201 -18.184 -10.577 -7.423 -12.768 3.113 -12.723 -13.441 1.458 -12.958 -12.987 1.608 -13.341 -3.645 0.053 -5.339 -1.351 -6.767 ML 94 92 6 97 6 1 1 166 341 -16.205 -16.551 -5.730 -10.959 -16.401 -0.028 -10.011 -11.749 1.973 -3.765 MR 95 92 6 97 6 1 2 96 271 -14.743 -13.472 -0.676 -13.450 -1.421 -11.663 -10.440 -9.241 -11.791 1.999 D 96 92 6 97 6 0 0 163 338 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 139 313 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 135 310 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 145 174 G C - - MP 99 98 6 103 6 2 3 84 258 -7.331 -7.385 -0.037 -17.513 -6.273 -18.187 -16.693 -2.142 -18.837 -0.560 -18.239 -6.251 -2.014 -18.463 -7.683 3.882 -14.899 -11.273 -4.206 -5.241 -15.007 -17.985 ML 100 98 6 103 6 1 1 145 319 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 2 93 267 -14.705 -13.434 -9.342 -13.412 -0.003 -11.625 -10.391 -9.198 -11.735 1.999 D 102 98 6 103 6 0 0 165 340 -19.325 -18.023 -13.820 -14.503 -14.520 -0.000 IL 103 103 5 103 6 1 2 99 274 -8.261 -8.524 -0.012 -10.179 -10.955 -10.615 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 102 276 -7.335 -0.014 -10.846 -9.014 -10.120 0.000 0.000 0.000 0.000 [ MATP 57 ] 147 172 G C - - MP 105 104 6 109 4 2 2 81 255 -13.169 -18.214 -0.000 -16.629 -16.761 -10.921 -19.357 -10.830 -18.366 -11.078 -12.637 -18.689 -14.705 4.000 -14.892 -11.275 -13.008 -11.117 -15.098 -18.614 ML 106 104 6 109 4 1 1 142 316 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 78 253 -13.396 -12.425 -10.292 -0.002 -9.773 1.603 -10.655 -0.058 D 108 104 6 109 4 0 0 165 340 -0.001 -14.428 -12.444 -10.699 IL 109 109 5 109 4 1 1 165 340 -0.152 -3.322 -12.510 -17.890 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 64 128 -0.415 -1.999 -14.834 0.000 0.000 0.000 0.000 [ MATL 58 ] 158 - U - - - ML 111 110 6 113 3 1 1 27 54 -19.041 -0.000 -17.695 -12.946 -4.827 -6.502 1.983 D 112 110 6 113 3 0 0 25 51 -9.933 -1.436 -0.668 IL 113 113 3 113 3 1 1 28 54 -1.660 -0.656 -4.360 0.000 0.000 0.000 0.000 [ MATL 59 ] 160 - U - - - ML 114 113 3 116 3 1 1 26 53 -19.058 -0.000 -17.712 -16.287 -6.377 -17.815 1.996 D 115 113 3 116 3 0 0 15 42 -14.849 -10.362 -0.001 IL 116 116 3 116 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 161 - C - - - ML 117 116 3 119 3 1 1 25 52 -3.617 -0.123 -17.712 -13.771 1.982 -4.313 -13.115 D 118 116 3 119 3 0 0 13 39 -14.849 -10.362 -0.001 IL 119 119 3 119 3 1 1 28 54 -1.000 -1.000 -13.835 0.000 0.000 0.000 0.000 [ MATL 61 ] 164 - A - - - ML 120 119 3 122 3 1 1 8 27 -19.058 -0.001 -10.413 1.423 -14.000 0.399 -13.916 D 121 119 3 122 3 0 0 10 28 -14.849 -10.362 -0.001 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 165 - A - - - ML 123 122 3 125 3 1 1 7 25 -19.057 -0.000 -17.711 1.992 -6.119 -14.181 -7.050 D 124 122 3 125 3 0 0 9 27 -14.900 -4.816 -0.052 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 166 - A - - - ML 126 125 3 128 3 1 1 5 24 -19.058 -0.000 -17.712 1.752 -2.452 -1.570 -3.169 D 127 125 3 128 3 0 0 7 26 -14.849 -0.697 -1.384 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 167 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -16.193 -4.024 -17.639 1.978 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 0 2 110 210 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 188 0 2 110 210 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 2 85 184 -0.084 -5.332 -4.985 -17.126 [ MATP 18 ] 23 59 G C - - MP 136 135 1 140 6 2 3 83 183 -18.864 -18.804 -0.083 -6.612 -4.449 -18.255 -2.631 -13.459 -16.816 -10.558 -18.017 -14.983 -12.719 -1.532 -14.757 3.940 -15.067 -2.800 -12.954 -15.301 -14.979 -15.478 ML 137 135 1 140 6 1 2 95 195 -14.496 -14.842 -9.556 -0.002 -14.692 -12.221 1.998 -9.783 -9.018 -9.127 MR 138 135 1 140 6 1 1 91 191 -15.377 -14.106 -10.015 -14.084 -0.021 -6.261 -9.518 -4.060 -10.391 1.977 D 139 135 1 140 6 0 0 81 181 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 85 184 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 83 183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 24 58 A U - - MP 142 141 6 146 6 2 5 79 179 -18.781 -18.721 -0.046 -4.985 -17.777 -18.172 -14.982 -13.754 -7.999 3.924 -15.436 -17.048 -2.052 -14.914 -14.697 -1.305 -15.279 -11.070 -2.545 -16.174 -13.028 -13.701 ML 143 141 6 146 6 1 2 94 194 -14.968 -15.314 -10.028 -0.002 -15.164 -12.693 -9.530 1.531 0.146 -8.647 MR 144 141 6 146 6 1 1 90 190 -16.611 -15.340 -4.250 -15.318 -0.570 -1.868 -8.854 -2.755 1.379 0.320 D 145 141 6 146 6 0 0 70 170 -11.919 -10.617 -6.415 -7.097 -7.114 -0.040 IL 146 146 5 146 6 1 1 82 182 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 81 181 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 25 57 G C - - MP 148 147 6 152 6 2 3 71 171 -18.741 -18.681 -0.030 -17.457 -5.610 -18.132 -16.564 -2.850 -18.470 -2.768 -18.253 -14.501 -12.600 -18.092 -14.663 3.969 -14.868 -5.881 -4.698 -14.954 -15.028 -17.380 ML 149 147 6 152 6 1 2 93 193 -15.827 -16.174 -10.888 -0.001 -16.023 -13.553 0.330 -8.431 0.667 0.205 MR 150 147 6 152 6 1 2 91 191 -16.042 -14.771 -10.680 -14.749 -0.001 -12.963 1.158 0.821 -10.901 -9.362 D 151 147 6 152 6 0 0 52 152 -17.388 -16.086 -11.883 -12.566 -12.583 -0.001 IL 152 152 5 152 6 1 1 81 180 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 79 179 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 26 56 C G - - MP 154 153 6 158 4 2 3 47 131 -17.941 -18.148 -0.000 -16.562 -15.769 -16.049 -15.087 -1.469 -0.625 -15.232 3.826 -14.353 -15.190 -1.766 -15.311 -14.449 -4.424 -15.603 -4.179 -1.269 ML 155 153 6 158 4 1 2 92 192 -1.337 -2.700 -1.152 -11.823 0.833 -0.659 0.663 -9.249 MR 156 153 6 158 4 1 1 90 190 -1.842 -1.281 -7.417 -1.720 -11.589 -10.747 0.736 1.222 D 157 153 6 158 4 0 0 49 148 -12.810 -12.492 -10.507 -0.001 IL 158 158 5 158 4 1 2 96 196 -0.267 -13.784 -2.568 -16.270 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 1 61 120 -0.449 -3.853 -2.333 0.000 0.000 0.000 0.000 [ MATL 22 ] 34 - A - - - ML 160 159 6 162 3 1 3 45 101 -18.983 -0.000 -17.637 1.994 -6.979 -14.127 -6.979 D 161 159 6 162 3 0 0 44 100 -16.657 -4.453 -0.067 IL 162 162 3 162 3 1 1 46 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 35 - G - - - ML 163 162 3 165 3 1 2 44 100 -18.988 -0.000 -17.642 -1.564 -5.297 1.862 -14.105 D 164 162 3 165 3 0 0 44 100 -1.699 -2.508 -0.954 IL 165 165 3 165 3 1 2 46 102 -1.002 -0.999 -11.872 0.000 0.000 0.000 0.000 [ MATL 24 ] 38 - C - - - ML 166 165 3 168 3 1 1 43 99 -19.037 -0.357 -2.189 -2.416 1.158 -6.715 0.652 D 167 165 3 168 3 0 0 43 99 -15.637 -0.001 -10.029 IL 168 168 3 168 3 1 1 44 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 39 - C - - - ML 169 168 3 171 3 1 1 43 99 -7.071 -0.357 -2.239 -1.162 1.023 -12.107 0.605 D 170 168 3 171 3 0 0 41 97 -18.267 -13.780 -0.000 IL 171 171 3 171 3 1 1 43 99 -6.411 -0.020 -9.112 0.000 0.000 0.000 0.000 [ MATL 26 ] 41 - c - - - ML 172 171 3 174 3 1 1 42 98 -18.400 -0.000 -17.054 -1.598 0.886 -2.153 0.675 D 173 171 3 174 3 0 0 41 97 -19.105 -0.123 -3.614 IL 174 174 3 174 3 1 1 42 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 42 - G - - - ML 175 174 3 177 3 1 1 41 97 -19.042 -0.000 -17.696 -5.728 -3.065 1.949 -14.297 D 176 174 3 177 3 0 0 19 75 -15.492 -11.005 -0.001 IL 177 177 3 177 3 1 1 41 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 43 - G - - - ML 178 177 3 180 3 1 1 40 96 -5.064 -0.044 -17.696 -5.728 -15.339 1.993 -14.311 D 179 177 3 180 3 0 0 17 73 -15.492 -11.005 -0.001 IL 180 180 3 180 3 1 1 49 105 -0.475 -9.867 -1.840 0.000 0.000 0.000 0.000 [ MATL 29 ] 48 - U - - - ML 181 180 3 183 3 1 1 9 17 -3.013 -0.191 -17.652 -3.154 -1.118 -5.280 1.766 D 182 180 3 183 3 0 0 4 12 -16.445 -11.958 -0.000 IL 183 183 3 183 3 1 1 9 17 -3.272 -0.158 -13.537 0.000 0.000 0.000 0.000 [ MATL 30 ] 51 - A - - - ML 184 183 3 186 2 1 1 1 1 * 0.000 1.934 -6.091 -3.638 -3.587 D 185 183 3 186 2 0 0 0 0 * 0.000 IL 186 186 3 186 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 187 186 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 188 134 1 189 3 0 0 90 188 -19.087 -0.130 -3.533 IL 189 189 2 189 3 1 1 91 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 60 - G - - - ML 190 189 2 192 5 1 1 90 188 -17.889 -0.065 -17.705 -4.512 -18.809 -2.259 -14.781 1.875 -3.030 D 191 189 2 192 5 0 0 75 173 -14.929 -3.808 -14.191 -12.566 -0.107 IL 192 192 3 192 5 1 1 90 188 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 61 106 U A - - MP 193 192 3 197 6 2 2 89 187 -18.763 -6.916 -0.012 -17.479 -17.759 -18.154 -15.248 -15.276 -14.792 -3.340 -13.270 -15.101 2.042 -14.124 -8.304 -1.460 -15.055 -13.213 3.441 -3.976 -1.011 -13.597 ML 194 192 3 197 6 1 1 87 185 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 3 197 6 1 1 86 183 -15.719 -14.448 -7.751 -14.426 -0.007 -12.639 0.871 -9.498 -10.872 1.117 D 196 192 3 197 6 0 0 59 144 -19.332 -18.030 -13.827 -14.509 -14.527 -0.000 IL 197 197 5 197 6 1 1 88 186 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 88 186 -7.758 -0.010 -11.269 -9.437 -10.543 0.000 0.000 0.000 0.000 [ MATP 35 ] 62 104 C G - - MP 199 198 6 203 6 2 2 87 185 -18.764 -18.703 -0.041 -17.479 -5.148 -18.154 -15.589 -15.751 -15.005 -2.988 -6.398 -15.215 3.482 -14.298 -15.078 -0.343 -15.245 -13.904 1.897 -15.478 -2.506 -13.868 ML 200 198 6 203 6 1 1 85 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 85 182 -15.713 -14.442 -0.879 -14.420 -1.134 -12.634 -11.066 1.123 0.865 -9.499 D 202 198 6 203 6 0 0 59 142 -19.332 -18.030 -13.827 -14.509 -14.527 -0.000 IL 203 203 5 203 6 1 1 86 184 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 86 184 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 63 103 G C - - MP 205 204 6 209 6 2 2 85 183 -18.759 -18.698 -0.019 -17.474 -6.237 -18.149 -15.586 -13.378 -16.113 2.175 -17.692 -15.209 -12.607 -16.100 -14.631 3.469 -15.018 -11.016 -1.274 -15.382 -14.757 -14.743 ML 206 204 6 209 6 1 1 82 180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 80 178 -15.821 -14.550 -1.244 -14.528 -0.792 -12.742 -10.679 1.207 -11.892 0.757 D 208 204 6 209 6 0 0 59 140 -19.332 -18.030 -13.827 -14.509 -14.527 -0.000 IL 209 209 5 209 6 1 1 84 182 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 84 182 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 64 102 G C - - MP 211 210 6 215 6 2 2 84 181 -18.769 -3.265 -0.160 -10.263 -17.765 -18.160 -16.752 -13.324 -19.342 -10.821 -18.357 -3.200 -12.628 -18.677 -14.696 3.948 -1.347 -4.078 -12.999 -14.944 -15.089 -18.595 ML 212 210 6 215 6 1 1 80 177 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 6 1 1 62 150 -15.584 -14.313 -10.222 -14.291 -0.002 -12.505 -10.226 1.446 -11.312 0.350 D 214 210 6 215 6 0 0 59 139 -19.332 -18.030 -13.827 -14.509 -14.527 -0.000 IL 215 215 5 215 6 1 1 82 179 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 71 168 -11.382 -3.452 -14.893 -13.061 -0.139 0.000 0.000 0.000 0.000 [ MATP 38 ] 65 100 G C - - MP 217 216 6 221 4 2 2 82 180 -4.010 -6.746 -0.109 -9.252 -14.328 -2.294 -14.355 -1.753 -15.414 -14.028 -1.208 -14.922 -13.938 3.849 -14.190 -2.022 -3.627 -13.778 -1.585 -13.290 ML 218 216 6 221 4 1 1 73 171 -6.662 -6.844 -3.411 -0.172 -4.041 1.921 -4.722 -3.118 MR 219 216 6 221 4 1 1 61 148 -13.609 -12.638 -10.506 -0.001 0.346 1.447 -10.956 -9.066 D 220 216 6 221 4 0 0 59 138 -15.784 -15.465 -13.480 -0.000 IL 221 221 5 221 4 1 1 94 192 -1.021 -1.073 -11.123 -4.991 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 1 92 190 -0.272 -5.382 -2.758 0.000 0.000 0.000 0.000 [ MATL 39 ] 70 - C - - - ML 223 222 6 225 3 1 1 56 124 -6.599 -0.030 -6.651 -15.705 2.000 -16.940 -13.781 D 224 222 6 225 3 0 0 59 127 -18.517 -14.030 -0.000 IL 225 225 3 225 3 1 1 60 128 -6.797 -6.153 -0.034 0.000 0.000 0.000 0.000 [ MATL 40 ] 72 - U - - - ML 226 225 3 228 3 1 1 55 123 -3.815 -0.162 -4.826 -15.950 -14.555 -17.549 2.000 D 227 225 3 228 3 0 0 59 127 -18.601 -14.114 -0.000 IL 228 228 3 228 3 1 1 63 130 -0.708 -10.242 -1.369 0.000 0.000 0.000 0.000 [ MATL 41 ] 78 - u - - - ML 229 228 3 231 3 1 1 48 115 -18.476 -0.048 -4.922 0.001 -0.001 -0.001 0.001 D 230 228 3 231 3 0 0 59 127 -18.971 -14.484 -0.000 IL 231 231 3 231 3 1 1 52 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 79 - u - - - ML 232 231 3 234 3 1 1 19 87 -18.428 -0.000 -17.082 0.001 -0.001 -0.001 0.001 D 233 231 3 234 3 0 0 59 127 -19.058 -14.571 -0.000 IL 234 234 3 234 3 1 1 52 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 80 - u - - - ML 235 234 3 237 3 1 1 16 83 -18.428 -0.000 -17.082 0.001 -0.001 -0.001 0.001 D 236 234 3 237 3 0 0 59 127 -0.974 -14.571 -1.027 IL 237 237 3 237 3 1 1 62 129 -0.393 -2.067 -16.127 0.000 0.000 0.000 0.000 [ MATL 44 ] 88 - A - - - ML 238 237 3 240 3 1 1 7 33 -18.801 -0.000 -17.455 2.000 -14.719 -13.992 -14.050 D 239 237 3 240 3 0 0 22 49 -2.409 -13.545 -0.301 IL 240 240 3 240 3 1 1 25 51 -1.001 -0.999 -12.601 0.000 0.000 0.000 0.000 [ MATL 45 ] 91 - A - - - ML 241 240 3 243 2 1 1 1 1 * 0.000 1.981 -4.244 -14.098 -14.090 D 242 240 3 243 2 0 0 0 0 * 0.000 IL 243 243 3 243 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 244 243 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-fMet ACC bact-fMet-r2-022416 LENG 77 MAXL 251 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 18:34:08 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-fMet-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-fMet-r2-022416.sto NSEQ 8454 EFFN 3.575658 CKSUM 4201036437 STATS LOCAL MSV -8.5350 0.71912 STATS LOCAL VITERBI -9.6296 0.71912 STATS LOCAL FORWARD -3.1679 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49835 1.29204 1.23090 1.56178 1.38629 1.38629 1.38629 1.38629 0.03229 4.14222 4.14222 1.46634 0.26236 0.00000 * 1 1.65687 1.08631 1.65437 1.27086 1 c - - ( 1.38629 1.38629 1.38629 1.38629 0.05086 4.14222 3.39035 1.46634 0.26236 1.09861 0.40547 2 2.48378 3.35934 0.17305 3.20104 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04754 3.97560 3.58783 1.18013 0.36707 0.92304 0.50635 3 3.79582 0.11292 3.46378 2.93738 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.06429 3.37335 3.57590 0.70594 0.68052 1.47712 0.25915 4 1.89587 2.79894 0.32781 2.68186 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.06622 3.53308 3.35632 0.81628 0.58353 1.66757 0.20912 5 2.06415 2.70318 0.30897 2.63282 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04177 3.65585 4.19485 0.92230 0.50684 1.89727 0.16249 6 1.78524 2.23140 0.48514 2.21407 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03483 3.95227 4.19816 1.18660 0.36421 0.64317 0.74575 7 1.42592 2.56616 0.52136 2.41724 12 G - - ( 1.38629 1.38629 1.38629 1.38629 0.08716 2.67379 4.23514 0.73073 0.65692 0.66641 0.72062 8 2.61609 2.47825 3.12824 0.22411 16 U - - , 1.38629 1.38629 1.38629 1.38629 0.05738 3.27498 4.02039 1.38644 0.28763 1.10720 0.40120 9 1.33116 2.89729 0.51139 2.51336 22 G - - , 1.38629 1.38629 1.38629 1.38629 0.05107 4.24778 3.33855 1.46634 0.26236 0.95691 0.48464 10 1.83792 2.34046 0.44364 2.27427 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.06131 4.23018 3.10299 1.46634 0.26236 1.50546 0.25092 11 0.36824 2.62236 1.82761 2.59538 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.03047 4.19934 4.19934 1.46634 0.26236 1.71417 0.19859 12 2.49853 3.35060 0.17260 3.18792 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04369 4.20215 3.58328 1.46634 0.26236 1.20760 0.35513 13 2.33250 0.52717 2.14171 1.63363 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.06347 3.06735 4.20302 1.65656 0.21170 1.84810 0.17142 14 0.10942 3.54427 3.27682 3.29670 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03035 4.20329 4.20329 1.46634 0.26236 1.08873 0.41045 15 2.06067 3.16450 0.25941 2.83210 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04486 3.53467 4.22014 0.81628 0.58353 1.20522 0.35614 16 1.86818 0.90447 2.53974 1.01625 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.19626 4.22835 1.81016 1.46634 0.26236 0.56238 0.84362 17 1.62092 1.03912 2.36363 1.03722 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.18902 3.84577 1.89139 1.18342 0.36561 2.58216 0.07862 18 1.57047 1.17859 2.07517 1.02497 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03924 3.95071 3.95071 1.46634 0.26236 0.17919 1.80758 19 2.58482 3.14778 0.18293 3.01970 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02952 4.23066 4.23066 1.46634 0.26236 1.50213 0.25187 20 3.07240 4.04580 0.09496 3.62004 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05068 3.35597 4.23066 1.13229 0.38904 1.50213 0.25187 21 2.11276 1.89942 2.67527 0.41468 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.14057 2.34065 3.35597 0.35453 1.20901 1.50213 0.25187 22 0.20689 2.99607 2.70079 2.66281 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09359 3.17497 3.04608 1.30758 0.31536 0.84464 0.56161 23 1.83110 2.30700 0.48797 2.06883 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03767 4.20009 3.81775 1.46634 0.26236 1.88121 0.16535 24 3.32629 0.19916 3.19817 2.26512 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03066 4.19308 4.19308 1.46634 0.26236 0.74281 0.64583 25 2.75825 2.06575 2.41498 0.32780 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.02960 4.22785 4.22785 1.46634 0.26236 1.14847 0.38144 26 2.47194 0.52116 2.21450 1.54864 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.09356 4.23491 2.59244 1.46634 0.26236 0.64695 0.74158 27 2.19414 3.15609 0.25650 2.62828 60 G - - , 1.38629 1.38629 1.38629 1.38629 0.06135 4.19095 3.11504 1.46634 0.26236 1.71069 0.19936 28 2.25436 1.16603 1.96320 0.81408 61 u - - < 1.38629 1.38629 1.38629 1.38629 0.03152 4.16587 4.16587 1.46634 0.26236 2.16783 0.12152 29 2.37273 0.73966 1.99316 1.22679 62 c - - < 1.38629 1.38629 1.38629 1.38629 0.05090 4.16599 3.37821 1.46634 0.26236 1.45753 0.26502 30 1.50882 2.55823 0.50041 2.35276 63 G - - < 1.38629 1.38629 1.38629 1.38629 0.04064 4.16365 3.71814 1.46634 0.26236 1.56173 0.23543 31 2.43651 2.99347 0.21259 2.91995 64 G - - < 1.38629 1.38629 1.38629 1.38629 0.09808 4.16855 2.55173 1.46634 0.26236 2.15549 0.12312 32 1.86203 2.32560 0.44901 2.21955 65 G - - < 1.38629 1.38629 1.38629 1.38629 0.05849 3.25189 4.01118 0.92941 0.50217 2.53917 0.08222 33 3.03397 0.16724 3.60957 2.54064 70 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08182 4.10243 2.78020 1.46634 0.26236 2.54682 0.08157 34 2.73308 2.67626 3.25517 0.18924 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10721 2.87716 3.09298 0.83543 0.56861 2.74202 0.06661 35 1.25610 1.54436 1.56722 1.22703 78 u - - _ 1.38629 1.38629 1.38629 1.38629 0.10426 4.02742 2.51094 1.46634 0.26236 2.84127 0.06012 36 1.25551 1.54536 1.56847 1.22597 79 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03879 3.96195 3.96195 1.46634 0.26236 0.72638 0.66099 37 1.25551 1.54536 1.56847 1.22597 80 u - - _ 1.38629 1.38629 1.38629 1.38629 0.19618 1.82080 4.12015 1.18719 0.36395 1.48930 0.25558 38 0.11647 3.50511 3.20391 3.23670 88 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05924 3.17737 4.14637 0.63908 0.75031 1.02566 0.44404 39 0.14953 3.17936 3.04062 3.00640 91 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07308 2.90485 4.15283 1.55555 0.23708 1.55415 0.23746 40 2.48083 0.52172 2.11204 1.60031 100 C - - > 1.38629 1.38629 1.38629 1.38629 0.03684 3.85849 4.19490 1.09868 0.40543 1.89861 0.16226 41 3.08712 0.26103 2.73601 2.12630 102 C - - > 1.38629 1.38629 1.38629 1.38629 0.03059 4.19542 4.19542 1.46634 0.26236 1.92751 0.15725 42 2.53923 0.57748 2.36554 1.32477 103 C - - > 1.38629 1.38629 1.38629 1.38629 0.03059 4.19542 4.19542 1.46634 0.26236 1.92751 0.15725 43 1.40250 2.12250 0.66416 2.12375 104 G - - > 1.38629 1.38629 1.38629 1.38629 0.03607 3.89401 4.19542 1.13184 0.38926 1.92751 0.15725 44 0.95388 2.10212 1.03108 1.99555 106 a - - > 1.38629 1.38629 1.38629 1.38629 0.03223 4.19542 4.09508 1.46634 0.26236 0.34393 1.23436 45 0.11439 3.56685 3.12147 3.33109 107 A - - , 1.38629 1.38629 1.38629 1.38629 0.05827 3.16173 4.25061 1.96631 0.15079 1.03285 0.44004 46 2.25530 3.01323 0.24864 2.71561 116 G - - , 1.38629 1.38629 1.38629 1.38629 0.10757 2.43323 4.25211 2.54677 0.08157 1.09861 0.40547 47 2.26467 3.48867 0.19759 3.10350 137 G - - , 1.38629 1.38629 1.38629 1.38629 0.03892 4.25212 3.73240 1.46634 0.26236 1.09861 0.40547 48 2.26368 1.89960 2.77922 0.37933 138 U - - , 1.38629 1.38629 1.38629 1.38629 0.03459 4.24236 3.93110 1.46634 0.26236 1.23897 0.34204 49 2.96801 0.18223 3.59613 2.43321 139 C - - , 1.38629 1.38629 1.38629 1.38629 0.04873 3.40740 4.23806 0.72052 0.66651 0.90196 0.52049 50 1.89574 2.62495 0.36630 2.47628 141 G - - < 1.38629 1.38629 1.38629 1.38629 0.02903 4.24691 4.24691 1.46634 0.26236 1.21347 0.35263 51 1.96744 1.02147 1.71794 1.13730 142 c - - < 1.38629 1.38629 1.38629 1.38629 0.12449 2.36510 3.76753 0.28095 1.40675 1.21347 0.35263 52 1.32586 1.53359 1.17229 1.56538 144 g - - < 1.38629 1.38629 1.38629 1.38629 0.09764 4.23806 2.54355 1.46634 0.26236 0.90196 0.52049 53 2.07410 2.72580 0.30324 2.65333 145 G - - < 1.38629 1.38629 1.38629 1.38629 0.04424 3.94216 3.73504 1.19354 0.36118 0.47539 0.97191 54 2.82457 3.59527 0.12332 3.53260 147 G - - < 1.38629 1.38629 1.38629 1.38629 0.08909 2.64946 4.23029 2.12394 0.12733 1.50632 0.25068 55 2.70588 2.60671 3.18666 0.20077 158 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02953 4.23031 4.23031 1.46634 0.26236 1.06231 0.42412 56 3.01888 2.88476 3.54790 0.14330 160 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02928 4.23843 4.23843 1.46634 0.26236 1.37489 0.29151 57 3.02756 0.17018 3.41994 2.58574 161 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08826 2.65853 4.23843 0.83910 0.56581 1.37489 0.29151 58 0.57455 2.71606 1.28985 2.34761 164 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02980 4.23843 4.20453 1.46634 0.26236 1.37489 0.29151 59 0.10754 3.54353 3.29989 3.31980 165 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02930 4.23794 4.23794 1.46634 0.26236 1.34967 0.30019 60 0.43397 2.30559 2.07742 2.06268 166 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02928 4.23843 4.23843 1.46634 0.26236 0.91147 0.51405 61 2.87446 2.66850 3.39653 0.17351 167 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08749 2.66700 4.24690 1.15675 0.37761 0.90221 0.52033 62 3.64812 0.15259 3.41728 2.49278 172 C - - > 1.38629 1.38629 1.38629 1.38629 0.09106 4.02092 2.67221 1.20156 0.35771 1.09861 0.40547 63 2.87459 0.34713 2.55175 1.83946 174 C - - > 1.38629 1.38629 1.38629 1.38629 0.03171 4.19569 4.12574 1.46634 0.26236 0.34500 1.23176 64 1.80165 1.30007 1.36372 1.18171 175 u - - > 1.38629 1.38629 1.38629 1.38629 0.02911 4.23770 4.25109 1.44929 0.26754 1.05253 0.42933 65 1.54876 1.91254 0.77108 1.73007 177 g - - > 1.38629 1.38629 1.38629 1.38629 0.03793 4.25212 3.77274 1.46634 0.26236 1.09861 0.40547 66 2.69602 0.49298 2.44157 1.44946 178 C - - > 1.38629 1.38629 1.38629 1.38629 0.02980 4.24332 4.19976 1.46634 0.26236 0.80573 0.59196 67 2.64025 0.61576 2.38724 1.21557 180 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03280 4.01593 4.25148 1.19710 0.35963 1.06979 0.42020 68 2.46782 0.55814 2.06201 1.53358 182 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04483 3.51968 4.25211 0.93265 0.50007 1.09861 0.40547 69 2.82651 0.37942 2.52193 1.73604 185 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03297 4.00619 4.25212 1.18657 0.36423 1.09861 0.40547 70 2.85953 0.37995 2.61475 1.68405 187 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03826 3.75907 4.25212 0.96181 0.48159 1.09861 0.40547 71 3.05280 3.68706 0.10974 3.45266 189 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02888 4.25212 4.25212 1.46634 0.26236 1.09861 0.40547 72 3.24991 0.22438 3.13283 2.13183 191 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04244 4.25212 3.60008 1.46634 0.26236 1.09861 0.40547 73 1.10102 1.80133 1.36012 1.40340 192 a - - ) 1.38629 1.38629 1.38629 1.38629 0.03438 3.96770 4.20754 1.31847 0.31135 0.78806 0.60647 74 0.17373 3.18075 2.75850 2.90899 194 A - - : 1.38629 1.38629 1.38629 1.38629 0.04023 3.81726 4.04874 1.20126 0.35784 1.14332 0.38384 75 3.00306 0.17240 3.57900 2.51556 196 C - - : 1.38629 1.38629 1.38629 1.38629 0.04023 3.81733 4.04874 1.20134 0.35781 1.01478 0.45017 76 3.00861 0.17146 3.58449 2.52006 198 C - - : 1.38629 1.38629 1.38629 1.38629 0.03543 4.05113 4.05113 1.46634 0.26236 1.09861 0.40547 77 0.13411 3.37315 3.08428 3.09093 199 A - - : 1.38629 1.38629 1.38629 1.38629 0.01787 4.03357 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Gln ACC bact-Gln-r2-022416 STATES 230 NODES 61 CLEN 72 W 1037 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 13:31:12 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gln-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gln-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gln-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gln-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8979 EFFN 8979.000000 CKSUM 1285784443 NULL 0.000 0.000 0.000 0.000 EFP7GF -16.6320 0.71887 ECMLC 0.73975 -6.81875 1.35256 1600000 506281 0.002370 ECMGC 0.29014 -37.28376 -24.19990 1600000 17812 0.022457 ECMLI 0.72523 -6.37674 1.84573 1600000 466610 0.002572 ECMGI 0.30228 -34.60839 -22.09658 1600000 17562 0.022776 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1037 2227 -18.058 -19.304 -0.000 -12.061 IL 1 1 2 1 4 31 48 1040 2230 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 32 49 1041 2231 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 206 - G - - MR 3 2 3 5 5 35 52 1040 2230 -6.016 -0.058 -17.922 -5.369 -19.026 -0.225 -1.574 1.441 -3.406 D 4 2 3 5 5 28 45 1034 2224 -7.045 -2.400 -4.671 -6.102 -0.417 IR 5 5 3 5 5 30 47 1039 2229 -8.909 -0.296 -12.420 -10.587 -2.453 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 204 U A - - MP 6 5 3 10 6 39 56 1039 2229 -18.995 -18.934 -0.000 -17.711 -17.991 -18.386 -13.069 -15.453 -15.118 1.685 -7.441 -15.460 -0.837 -14.467 -12.981 -4.484 -15.371 -2.531 3.582 -15.592 -5.106 -13.932 ML 7 5 3 10 6 31 48 1037 2227 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 32 48 1034 2223 -15.080 -13.809 -1.990 -13.787 -0.419 -12.001 -5.605 -0.635 -7.532 1.736 D 9 5 3 10 6 28 44 1032 2222 -14.735 -13.433 -9.230 -9.912 -9.930 -0.006 IL 10 10 5 10 6 32 49 1038 2228 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 32 49 1038 2227 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 203 G C - - MP 12 11 6 16 6 37 54 1037 2227 -19.004 -18.943 -0.010 -7.232 -18.000 -18.395 -6.922 -11.657 -13.054 -4.236 -12.784 -12.539 0.927 -13.122 -13.211 3.419 -13.592 -2.497 1.323 -7.230 -0.612 -11.841 ML 13 11 6 16 6 31 49 1035 2225 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 31 47 1031 2221 -14.664 -13.393 -9.302 -13.371 -0.003 -11.585 -8.613 1.683 -9.383 -0.348 D 15 11 6 16 6 28 44 1032 2222 -14.735 -13.433 -9.230 -9.912 -9.930 -0.006 IL 16 16 5 16 6 32 49 1036 2226 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 32 49 1036 2226 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 202 g c - - MP 18 17 6 22 6 36 52 1035 2225 -18.995 -18.934 -0.000 -17.710 -17.990 -18.385 -14.528 -13.236 -14.517 -1.602 -14.982 -15.483 2.427 -14.659 -14.402 2.909 -1.621 -0.954 0.959 -14.786 -12.353 -13.283 ML 19 17 6 22 6 33 50 1034 2224 -12.663 -13.009 -0.010 -7.418 -12.859 -10.389 -6.581 -8.347 1.993 -7.342 MR 20 17 6 22 6 30 46 1030 2220 -14.664 -13.393 -2.305 -13.371 -0.327 -11.585 -0.340 -4.652 1.660 -6.743 D 21 17 6 22 6 28 44 1032 2222 -14.735 -13.433 -0.131 -9.912 -9.930 -3.562 IL 22 22 5 22 6 30 46 1034 2224 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 30 46 1034 2223 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 201 G C - - MP 24 23 6 28 6 34 50 1033 2223 -19.014 -18.953 -0.000 -17.729 -18.009 -18.404 -15.529 -15.548 -15.063 -1.158 -13.541 -15.365 1.921 -7.575 -15.098 3.265 -15.325 -13.491 0.917 -15.483 -1.961 -13.875 ML 25 23 6 28 6 29 45 1031 2221 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 29 45 1028 2218 -14.341 -13.070 -7.885 -13.048 -0.007 -11.261 -8.851 1.997 -9.390 -7.733 D 27 23 6 28 6 26 42 1026 2216 -11.238 -9.936 -5.733 -6.415 -6.432 -0.064 IL 28 28 5 28 6 30 46 1032 2222 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 30 46 1032 2222 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 200 g c - - MP 30 29 6 34 6 32 48 1031 2221 -19.014 -18.953 -0.000 -17.730 -18.009 -18.404 -13.151 -10.416 -13.038 1.092 -9.697 -13.718 2.578 -13.175 -13.233 2.831 -13.597 -3.472 -0.604 -13.007 -4.887 -11.847 ML 31 29 6 34 6 28 45 1029 2219 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 28 44 1027 2217 -14.337 -13.066 -8.975 -13.044 -0.004 -11.258 -8.847 1.997 -9.385 -7.730 D 33 29 6 34 6 26 42 1026 2216 -11.238 -9.936 -2.288 -6.415 -6.432 -0.376 IL 34 34 5 34 6 29 45 1030 2220 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 29 45 1030 2220 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 199 u a - - MP 36 35 6 40 6 30 46 1029 2219 -19.014 -18.953 -0.000 -17.730 -18.009 -18.404 -13.309 -7.352 -13.309 1.013 -12.179 -14.152 1.571 -12.830 -11.283 1.392 -13.681 -4.800 2.780 -10.932 0.559 -8.221 ML 37 35 6 40 6 27 44 1027 2217 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 27 43 1026 2216 -14.337 -13.066 -8.975 -13.044 -0.004 -11.258 -5.818 1.989 -7.940 -7.034 D 39 35 6 40 6 26 42 1026 2216 -10.941 -9.639 -1.288 -6.118 -6.136 -0.836 IL 40 40 5 40 6 28 44 1028 2218 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 28 44 1028 2218 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 198 G C - - MP 42 41 6 46 4 28 44 1027 2217 -18.244 -18.451 -0.000 -16.865 -6.684 -9.490 -12.800 2.687 -13.931 -13.396 -1.671 -13.490 -13.238 3.093 -13.484 -4.626 -0.644 -8.834 -5.857 -11.765 ML 43 41 6 46 4 26 43 1026 2216 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 26 42 1025 2215 -12.362 -11.391 -9.259 -0.003 1.993 -8.975 -8.316 -6.115 D 45 41 6 46 4 25 41 1025 2215 -5.702 -5.383 -0.646 -1.653 IL 46 46 5 46 4 27 43 1027 2217 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 27 43 1026 2216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 26 42 1025 2215 -19.153 -0.000 -17.807 -16.466 -15.070 -18.065 2.000 D 49 47 6 50 3 25 41 1024 2214 -14.481 -0.003 -8.873 IL 50 50 3 50 3 26 42 1025 2215 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - g - - - ML 51 50 3 53 2 25 41 1024 2214 -19.830 -0.000 0.108 0.090 0.705 -2.135 D 52 50 3 53 2 24 40 1023 2213 -8.445 -0.004 IL 53 53 3 53 2 25 41 1024 2214 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 24 40 1023 2213 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 1 7 102 202 -19.174 -0.000 -17.828 IL 56 56 2 56 3 1 8 103 204 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 150 - c - - - ML 57 56 2 59 3 1 7 102 202 -19.174 -0.396 -2.058 -0.149 0.979 -0.429 -1.379 D 58 56 2 59 3 0 6 101 202 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 102 203 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 151 - A - - - ML 60 59 3 62 3 1 7 101 201 -2.236 -0.344 -17.432 1.633 -4.440 -1.052 -1.439 D 61 59 3 62 3 0 6 101 202 -1.854 -0.468 -11.975 IL 62 62 3 62 3 1 6 108 209 -0.264 -2.723 -5.969 0.000 0.000 0.000 0.000 [ MATL 45 ] 172 - u - - - ML 63 62 3 65 3 1 6 61 125 -19.142 -0.233 -2.745 -0.231 -3.149 0.468 0.724 D 64 62 3 65 3 0 4 59 122 -15.072 -10.585 -0.001 IL 65 65 3 65 3 1 6 62 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 173 - u - - - ML 66 65 3 68 3 1 7 60 124 -18.909 -0.000 -17.563 0.470 -2.751 -0.221 0.685 D 67 65 3 68 3 0 4 59 122 -18.017 -0.200 -2.947 IL 68 68 3 68 3 1 5 60 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 174 - C - - - ML 69 68 3 71 5 1 6 59 123 -18.075 -0.000 -13.546 -18.103 -18.994 -4.671 1.140 -4.466 0.775 D 70 68 3 71 5 0 1 55 119 -13.029 -8.872 -12.290 -0.004 -10.577 IL 71 71 3 71 5 1 1 59 123 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 175 197 G C - - MP 72 71 3 76 6 2 7 58 122 -19.003 -18.942 -0.000 -17.719 -17.999 -18.394 -14.662 -13.628 -14.438 -1.688 -13.892 -14.962 2.471 -14.339 -14.526 3.213 -14.829 -1.899 -1.830 -14.579 -1.632 -13.285 ML 73 71 3 76 6 1 1 57 121 -7.255 -7.601 -0.509 -2.010 -7.451 -4.980 -0.525 1.016 -1.271 -0.204 MR 74 71 3 76 6 1 3 55 119 -14.925 -13.654 -9.563 -13.632 -0.003 -11.846 -8.210 -9.982 1.998 -8.970 D 75 71 3 76 6 0 0 57 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 57 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 57 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 176 196 c g - - MP 78 77 6 82 6 2 7 56 120 -19.003 -6.115 -0.021 -17.719 -17.999 -18.394 -13.298 -12.999 -5.546 0.900 -1.769 -14.142 2.502 -9.272 -13.156 -0.304 -13.670 0.283 2.081 -8.598 0.912 -6.517 ML 79 77 6 82 6 1 1 55 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 2 54 118 -14.925 -13.654 -9.563 -13.632 -0.003 -11.846 1.998 -9.683 -8.919 -9.029 D 81 77 6 82 6 0 0 58 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 56 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 2 55 119 -8.781 -6.869 -0.017 -10.460 -11.566 0.000 0.000 0.000 0.000 [ MATP 50 ] 177 194 A U - - MP 84 83 6 88 6 2 6 54 118 -18.982 -18.922 -0.000 -17.698 -17.978 -18.373 -13.182 -11.930 -13.032 3.182 -13.591 -13.683 -2.481 -4.861 -13.355 0.849 -13.658 -0.424 1.985 -8.788 -2.366 -6.706 ML 85 83 6 88 6 1 2 54 118 -13.772 -0.008 -8.832 -8.527 -13.968 -11.497 -7.616 -9.390 1.997 -8.378 MR 86 83 6 88 6 1 2 53 117 -14.925 -13.654 -0.004 -13.632 -8.766 -11.846 -8.210 -9.982 1.998 -8.970 D 87 83 6 88 6 0 0 58 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 55 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 53 117 -8.781 -0.005 -12.293 -10.460 -11.566 0.000 0.000 0.000 0.000 [ MATP 51 ] 178 192 G C - - MP 90 89 6 94 6 2 4 52 116 -19.035 -18.974 -0.000 -17.751 -18.031 -18.426 -16.883 -8.980 -18.872 -2.684 -18.555 -14.784 -3.793 -18.463 -14.958 3.973 -15.160 -9.199 -4.002 -15.241 -15.325 -17.814 ML 91 89 6 94 6 1 1 56 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 59 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 59 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 55 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 55 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 179 191 G C - - MP 96 95 6 100 4 2 2 50 114 -18.265 -18.472 -0.040 -5.195 -17.005 -3.692 -19.526 -11.082 -18.617 -14.741 -12.894 -18.894 -14.962 3.978 -2.981 -4.773 -13.264 -15.213 -15.353 -18.732 ML 97 95 6 100 4 1 1 55 119 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 60 123 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 59 123 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 54 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 54 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 180 - U - - - ML 102 101 6 104 3 1 3 23 86 -19.134 -0.000 -17.788 -6.839 -5.633 -5.770 1.983 D 103 101 6 104 3 0 0 60 124 -15.400 -10.913 -0.001 IL 104 104 3 104 3 1 1 54 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 181 - U - - - ML 105 104 3 107 3 1 2 20 84 -19.134 -0.000 -17.788 -13.380 -6.793 -4.804 1.984 D 106 104 3 107 3 0 0 60 124 -15.400 -10.913 -0.001 IL 107 107 3 107 3 1 1 54 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 182 - C - - - ML 108 107 3 110 3 1 1 15 79 -19.134 -0.000 -17.788 -6.258 1.995 -14.967 -13.588 D 109 107 3 110 3 0 0 60 124 -0.002 -10.913 -9.791 IL 110 110 3 110 3 1 1 60 124 -0.416 -1.997 -13.374 0.000 0.000 0.000 0.000 [ MATL 56 ] 187 - G - - - ML 111 110 3 113 3 1 1 8 27 -19.174 -0.000 -17.828 -1.170 -15.416 1.830 -14.431 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 188 - A - - - ML 114 113 3 116 3 1 1 7 25 -19.174 -0.000 -17.828 2.000 -15.092 -14.369 -14.422 D 115 113 3 116 3 0 0 14 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 189 - A - - - ML 117 116 3 119 3 1 1 5 24 -19.174 -0.069 -4.422 1.170 -0.719 -0.108 -2.224 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 190 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -5.562 -0.581 -1.885 1.604 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 7 21 1000 2190 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 7 21 1000 2190 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 33 54 -0.017 -17.165 -6.407 -17.213 [ MATP 15 ] 10 36 G C - - MP 127 126 1 131 6 2 6 33 54 -7.216 -6.449 -0.026 -17.734 -18.013 -18.409 -16.999 -7.570 -19.581 -4.297 -18.605 -2.129 -4.095 -18.920 -14.945 3.955 -15.132 -3.056 -13.248 -5.215 -15.338 -18.828 ML 128 126 1 131 6 1 1 31 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 32 53 -14.047 -12.776 -0.007 -12.754 -7.888 -10.968 -8.484 1.996 -9.002 -7.408 D 130 126 1 131 6 0 0 29 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 32 53 -8.591 -8.854 -0.009 -10.509 -11.286 -10.946 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 32 53 -8.466 -0.006 -11.977 -10.145 -11.251 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 34 C G - - MP 133 132 6 137 6 2 6 31 52 -19.035 -18.974 -0.000 -17.751 -14.240 -18.426 -13.339 -13.040 -9.759 -0.298 -7.551 -14.181 3.130 -12.856 -13.196 1.337 -13.709 -2.404 1.846 -13.521 -3.106 -11.915 ML 134 132 6 137 6 1 1 29 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 27 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 30 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 33 C G - - MP 139 138 6 143 6 2 6 29 50 -19.035 -5.771 -0.027 -17.751 -18.030 -18.426 -14.032 -13.785 -13.940 -2.472 -12.709 -3.971 3.170 -13.415 -13.836 2.038 -4.661 -11.399 0.193 -1.126 0.006 -12.566 ML 140 138 6 143 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 27 48 -7.610 -6.339 -2.248 -6.317 -0.482 -4.531 -0.150 -1.076 0.938 -0.496 D 142 138 6 143 6 0 0 26 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 28 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 28 49 -9.153 -0.004 -12.664 -10.832 -11.938 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 31 a a - - MP 145 144 6 149 4 2 4 27 48 -6.132 -18.472 -0.021 -16.886 2.990 -4.687 -15.330 -4.471 -10.692 -15.518 1.443 -14.614 -1.462 -12.242 -4.661 -4.258 1.310 -15.822 1.086 -2.358 ML 146 144 6 149 4 1 1 27 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 26 47 -5.507 -4.536 -2.403 -0.423 1.135 -1.018 -0.764 -0.473 D 148 144 6 149 4 0 0 25 47 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 28 50 -1.259 -10.470 -0.782 -12.955 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 27 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 151 150 6 153 3 1 2 24 45 -19.174 -0.000 -17.828 1.918 -6.252 -13.804 -2.274 D 152 150 6 153 3 0 0 22 43 -7.210 -2.723 -0.248 IL 153 153 3 153 3 1 1 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - g - - - ML 154 153 3 156 3 1 1 23 44 -19.174 -0.012 -6.966 0.933 -4.248 0.995 -4.469 D 155 153 3 156 3 0 0 21 42 -7.210 -2.723 -0.248 IL 156 156 3 156 3 1 1 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - u - - - ML 157 156 3 159 3 1 1 22 43 -1.349 -0.719 -17.816 -3.529 0.931 -4.369 0.970 D 158 156 3 159 3 0 0 21 41 -13.643 -0.006 -8.034 IL 159 159 3 159 3 1 1 22 42 -3.513 -0.132 -15.339 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 160 159 3 162 3 1 1 21 41 -7.271 -0.009 -17.828 -2.312 -15.402 1.922 -6.656 D 161 159 3 162 3 0 0 19 39 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 21 41 -6.635 -0.017 -9.335 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 163 162 3 165 3 1 1 20 40 -19.174 -0.000 -17.828 -13.713 -15.442 2.000 -14.438 D 164 162 3 165 3 0 0 18 38 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 21 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 166 165 3 168 3 1 1 19 39 -2.389 -0.306 -17.828 -5.231 0.202 -1.618 1.320 D 167 165 3 168 3 0 0 15 35 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 40 -1.295 -0.755 -14.934 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.922 -5.899 -2.373 -14.028 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 7 984 2174 -6.405 -0.017 -17.828 IL 174 174 2 174 3 1 5 985 2175 -7.484 -0.009 -10.184 0.000 0.000 0.000 0.000 [ MATL 28 ] 38 - A - - - ML 175 174 2 177 5 1 7 984 2174 -3.216 -0.164 -14.894 -18.134 -19.026 1.548 -3.527 -0.278 -2.596 D 176 174 2 177 5 0 0 1006 2195 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 7 989 2179 -0.228 -2.772 -16.145 -17.978 -17.251 0.000 0.000 0.000 0.000 [ MATP 29 ] 48 149 C G - - MP 178 177 3 182 6 2 6 982 2172 -7.158 -18.974 -0.062 -4.826 -18.031 -18.426 -8.608 -6.363 -13.263 1.707 -5.851 -7.413 3.183 -1.228 -9.411 0.808 -13.663 -0.501 -0.582 -6.091 -8.276 -4.521 ML 179 177 3 182 6 1 1 1036 2226 -6.707 -7.053 -1.768 -0.656 -6.903 -4.433 0.040 -0.846 0.680 -0.298 MR 180 177 3 182 6 1 1 1020 2209 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 1036 2226 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 3 977 2167 -8.665 -8.928 -0.009 -10.583 -11.359 -11.020 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 989 2179 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 50 148 C G - - MP 184 183 6 188 6 2 4 975 2165 -5.667 -3.994 -0.124 -17.699 -17.979 -18.374 -13.337 -13.036 -13.332 0.776 -12.195 -14.170 3.559 -12.849 -13.191 0.195 -10.078 -3.593 0.285 -13.519 -4.352 -8.724 ML 185 183 6 188 6 1 4 1051 2241 -15.088 -15.434 -9.204 -0.003 -15.284 -12.814 -11.122 -7.889 -12.366 1.998 MR 186 183 6 188 6 1 1 1032 2222 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 1040 2230 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 3 1039 2229 -10.091 -0.007 -8.272 -12.009 -12.785 -12.446 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 2 1038 2228 -11.261 -2.060 -14.772 -0.397 -14.046 0.000 0.000 0.000 0.000 [ MATP 31 ] 52 146 G C - - MP 190 189 6 194 6 2 4 963 2153 -18.890 -18.829 -0.066 -4.478 -17.885 -18.280 -12.961 -2.494 -12.812 1.367 -13.229 -13.448 0.478 -13.224 -13.130 3.118 -10.012 -8.414 1.555 -12.719 -2.149 -11.704 ML 191 189 6 194 6 1 3 1050 2240 -15.087 -15.433 -10.147 -0.002 -15.283 -12.812 1.999 -10.343 -9.579 -9.682 MR 192 189 6 194 6 1 1 1049 2239 -16.401 -15.130 -11.039 -15.108 -0.505 -1.761 1.999 -11.093 -10.332 -10.428 D 193 189 6 194 6 0 0 1043 2233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 979 2169 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 976 2166 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 53 145 G C - - MP 196 195 6 200 6 2 2 951 2141 -4.247 -18.763 -0.097 -17.539 -17.819 -6.361 -16.362 -7.841 -17.600 -3.834 -18.082 -14.677 -0.431 -17.464 -14.727 3.767 -14.964 -1.832 0.371 -15.079 -14.956 -16.376 ML 197 195 6 200 6 1 2 1049 2239 -16.190 -16.537 -5.879 -0.025 -16.386 -13.916 -9.996 -11.736 1.975 -3.916 MR 198 195 6 200 6 1 1 1049 2239 -15.897 -14.626 -10.535 -14.604 -9.738 -0.003 -10.843 1.999 -11.532 -9.470 D 199 195 6 200 6 0 0 1048 2238 -17.257 -15.955 -11.752 -12.435 -12.452 -0.001 IL 200 200 5 200 6 1 3 947 2137 -11.347 -11.610 -0.001 -13.265 -14.041 -13.702 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 957 2147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 55 144 a u - - MP 202 201 6 206 4 2 3 946 2136 -18.037 -2.337 -0.318 -16.659 -12.783 -4.250 -12.606 2.594 -13.599 -8.164 -1.018 -10.603 -13.026 2.150 -10.476 -3.003 2.183 -12.468 -2.043 -3.988 ML 203 201 6 206 4 1 1 1049 2239 -13.250 -0.003 -9.212 -12.162 1.078 -10.371 0.916 -10.280 MR 204 201 6 206 4 1 1 886 2076 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 1048 2238 -14.666 -0.013 -12.363 -6.802 IL 206 206 5 206 4 1 1 968 2158 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 1048 2238 -0.022 -6.071 -11.009 0.000 0.000 0.000 0.000 [ MATL 34 ] 56 - c - - - ML 208 207 6 210 3 1 3 12 30 -19.159 -0.000 -17.813 -1.931 0.931 -6.751 0.865 D 209 207 6 210 3 0 0 13 32 -14.027 -9.540 -0.002 IL 210 210 3 210 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 57 - U - - - ML 211 210 3 213 3 1 2 11 29 -19.159 -0.000 -17.813 -5.446 -2.348 -6.572 1.915 D 212 210 3 213 3 0 0 12 31 -14.027 -4.122 -0.085 IL 213 213 3 213 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 58 - u - - - ML 214 213 3 216 3 1 1 10 28 -19.159 -0.000 -17.813 -0.225 0.036 -0.087 0.236 D 215 213 3 216 3 0 0 11 30 -13.944 -0.005 -8.335 IL 216 216 3 216 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 59 - g - - - ML 217 216 3 219 3 1 1 8 27 -19.174 -0.000 -17.828 -0.533 -0.197 0.558 -0.053 D 218 216 3 219 3 0 0 15 34 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 60 - a - - - ML 220 219 3 222 3 1 1 7 25 -19.174 -0.091 -4.038 0.419 0.027 -0.054 -0.555 D 221 219 3 222 3 0 0 14 33 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 61 - A - - - ML 223 222 3 225 3 1 1 5 24 -19.083 -0.000 -17.737 1.346 -10.496 0.542 -10.488 D 224 222 3 225 3 0 0 6 25 -16.556 -12.069 -0.000 IL 225 225 3 225 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 62 - U - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 -0.783 -0.359 -1.219 1.144 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Gln ACC bact-Gln-r2-022416 LENG 72 MAXL 1028 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 13:31:13 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gln-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gln-r2-022416.sto NSEQ 8979 EFFN 62.574429 CKSUM 1285784443 STATS LOCAL MSV -8.1478 0.71887 STATS LOCAL VITERBI -9.0793 0.71887 STATS LOCAL FORWARD -3.6956 0.71887 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49844 1.35998 1.24288 1.46401 1.38629 1.38629 1.38629 1.38629 0.00313 6.46113 6.46113 1.46634 0.26236 0.00000 * 1 1.62309 2.96135 3.93577 0.31275 1 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00313 6.46113 6.46113 1.46634 0.26236 1.09861 0.40547 2 3.44641 2.05252 0.44048 1.62963 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00311 6.46715 6.46715 1.46634 0.26236 1.09861 0.40547 3 3.10621 1.14590 0.69093 1.99377 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00311 6.46715 6.46715 1.46634 0.26236 1.09861 0.40547 4 3.10921 1.42377 0.56977 1.90445 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00309 6.47355 6.47355 1.46634 0.26236 1.09861 0.40547 5 1.95041 1.06896 0.79786 2.74690 5 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00309 6.47358 6.47358 1.46634 0.26236 1.09861 0.40547 6 2.04834 1.57326 1.77173 0.70594 6 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00309 6.47363 6.47363 1.46634 0.26236 1.09861 0.40547 7 0.98588 3.40595 0.61692 2.91667 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00309 6.47371 6.47371 1.46634 0.26236 1.09861 0.40547 8 7.13853 6.53676 7.87526 0.00263 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.00309 6.47379 6.47379 1.46634 0.26236 1.09861 0.40547 9 1.30955 1.37112 0.92603 2.52433 9 g - - , 1.38629 1.38629 1.38629 1.38629 0.01453 6.48783 4.35006 1.46634 0.26236 1.09861 0.40547 10 4.84058 4.04278 0.02889 5.79933 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.00963 4.82292 6.47638 0.34678 1.22745 0.21175 1.65636 11 2.75816 0.65485 1.75590 1.40928 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.00309 6.48783 6.45782 1.46634 0.26236 1.09861 0.40547 12 3.52287 0.62441 1.38428 1.69062 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.00305 6.48778 6.48778 1.46634 0.26236 1.10872 0.40045 13 0.78966 1.64921 2.97445 1.19494 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.17984 6.48778 0.63194 0.75835 1.10872 0.40045 14 0.06335 4.85227 5.49502 3.00638 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00305 6.48778 6.48778 1.46634 0.26236 1.10872 0.40045 15 0.75368 4.01095 0.70667 4.01891 18 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01083 6.48778 4.68309 1.46634 0.26236 1.10872 0.40045 16 3.41352 0.75327 4.05192 0.73635 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.48205 0.96509 6.48001 0.09869 2.36471 0.28323 1.39977 17 3.02789 6.63701 0.05564 5.42878 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00934 4.85641 6.48783 0.35384 1.21061 1.09861 0.40547 18 6.00976 7.23472 0.00463 6.53737 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 19 4.03847 1.27063 2.53138 0.47454 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.20770 1.68184 6.48782 0.53130 0.88634 1.09861 0.40547 20 0.06157 4.98198 3.01185 5.61142 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 21 0.48328 3.71095 1.15019 3.16501 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.02098 3.95095 6.48783 0.15134 1.96291 1.09861 0.40547 22 2.33185 1.30224 0.51830 3.34014 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 23 1.47059 1.84344 0.63055 2.53028 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01408 4.38501 6.48783 0.22854 1.58813 1.09861 0.40547 24 5.72792 0.02807 5.12263 3.99175 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.01456 4.34834 6.48783 0.22079 1.61890 1.09861 0.40547 25 0.32198 3.56505 1.61307 3.04248 38 A - - , 1.38629 1.38629 1.38629 1.38629 0.11324 2.24862 6.48781 1.91886 0.15873 1.09861 0.40547 26 1.62162 0.58558 1.82526 2.47145 48 C - - < 1.38629 1.38629 1.38629 1.38629 0.00986 4.79231 6.48783 0.33367 1.25980 1.09861 0.40547 27 2.20450 0.40829 2.40337 2.00623 50 C - - < 1.38629 1.38629 1.38629 1.38629 0.08334 3.91757 2.81222 0.14658 1.99260 1.09861 0.40547 28 1.61164 2.39588 0.64161 1.69878 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.00324 6.42749 6.42749 1.46634 0.26236 3.72504 0.02441 29 3.87491 3.09766 0.15173 2.59204 53 G - - < 1.38629 1.38629 1.38629 1.38629 0.06270 3.02901 4.38925 0.06556 2.75742 3.72504 0.02441 30 1.02819 3.01002 1.10622 1.33846 55 a - - < 1.38629 1.38629 1.38629 1.38629 0.00327 6.41664 6.41664 1.46634 0.26236 0.19871 1.71364 31 2.61527 0.74889 4.72832 0.80941 56 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00308 6.47761 6.47761 1.46634 0.26236 2.26975 0.10908 32 4.30258 2.93253 4.89420 0.07719 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00308 6.47761 6.47761 1.46634 0.26236 1.95044 0.15340 33 1.48917 1.39188 1.47431 1.21437 58 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00308 6.47819 6.47819 1.46634 0.26236 0.24212 1.53696 34 1.66744 1.53953 1.05640 1.38997 59 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 35 1.10643 1.39920 1.45203 1.66933 60 a - - _ 1.38629 1.38629 1.38629 1.38629 0.06389 6.48782 2.80729 1.46634 0.26236 1.09861 0.40547 36 0.45283 5.97206 1.02470 5.90651 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00324 6.42718 6.42718 1.46634 0.26236 0.22837 1.58880 37 1.81259 1.63210 2.15721 0.64321 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.37171 1.17676 6.13438 4.16387 0.01567 0.23618 1.55891 38 1.37182 1.16372 2.70346 1.00223 144 u - - > 1.38629 1.38629 1.38629 1.38629 0.09836 6.48719 2.38428 1.46634 0.26236 0.90736 0.51683 39 2.58451 0.18004 3.03684 3.18583 145 C - - > 1.38629 1.38629 1.38629 1.38629 0.00335 6.39282 6.39282 1.46634 0.26236 0.49442 0.94142 40 1.59462 0.65690 2.25213 1.75225 146 C - - > 1.38629 1.38629 1.38629 1.38629 0.08644 2.51074 6.43499 0.03836 3.27982 3.23471 0.04017 41 2.29796 2.48603 0.36441 2.10628 148 G - - > 1.38629 1.38629 1.38629 1.38629 0.00316 6.45311 6.45311 1.46634 0.26236 0.08274 2.53317 42 2.61710 2.11875 0.61389 1.32589 149 G - - > 1.38629 1.38629 1.38629 1.38629 0.00305 6.48780 6.48780 1.46634 0.26236 1.08656 0.41155 43 1.46389 0.76783 1.69684 2.10880 150 c - - , 1.38629 1.38629 1.38629 1.38629 0.18756 6.48781 1.77489 1.46634 0.26236 1.09861 0.40547 44 0.27207 3.79214 2.12665 2.33908 151 A - - , 1.38629 1.38629 1.38629 1.38629 0.31230 1.32271 6.30392 1.71973 0.19737 0.01796 4.02846 45 1.49841 3.04503 1.10930 0.91846 172 u - - , 1.38629 1.38629 1.38629 1.38629 0.18044 6.48779 1.81047 1.46634 0.26236 1.10470 0.40244 46 1.07609 2.81939 1.55710 0.94499 173 u - - , 1.38629 1.38629 1.38629 1.38629 0.00364 6.31099 6.31099 1.46634 0.26236 0.15575 1.93638 47 3.79779 0.61328 4.09653 0.86898 174 C - - , 1.38629 1.38629 1.38629 1.38629 0.00311 6.46661 6.46661 1.46634 0.26236 2.82094 0.06140 48 3.11833 1.13728 0.54737 2.87160 175 G - - < 1.38629 1.38629 1.38629 1.38629 0.00311 6.46661 6.46661 1.46634 0.26236 2.82094 0.06140 49 2.09650 1.00360 1.98979 0.98395 176 u - - < 1.38629 1.38629 1.38629 1.38629 0.00311 6.46661 6.46661 1.46634 0.26236 2.82094 0.06140 50 0.67368 3.22962 1.60753 1.38542 177 A - - < 1.38629 1.38629 1.38629 1.38629 0.00311 6.46661 6.46661 1.46634 0.26236 0.12681 2.12779 51 4.25214 5.12839 0.02596 5.20935 178 G - - < 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 52 4.66060 6.32919 0.01314 6.31323 179 G - - < 1.38629 1.38629 1.38629 1.38629 0.02987 6.48783 3.57902 1.46634 0.26236 1.09861 0.40547 53 4.58052 4.29265 4.69074 0.03366 180 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00313 6.46109 6.46109 1.46634 0.26236 3.01234 0.05043 54 4.94027 4.60386 4.38184 0.03012 181 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00313 6.46109 6.46109 1.46634 0.26236 0.10353 2.31919 55 5.20256 0.01149 6.18698 5.55608 182 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02987 3.57902 6.48783 1.11337 0.39817 1.09861 0.40547 56 2.26451 6.57346 0.11379 6.08468 187 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 57 0.00363 7.05089 6.54120 6.63257 188 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 58 0.60282 1.88063 1.48883 2.59561 189 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04934 6.48783 3.06574 1.46634 0.26236 1.09861 0.40547 59 4.24331 1.82385 2.71685 0.27687 190 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00319 6.44168 6.44168 1.46634 0.26236 0.06325 2.79218 60 6.16060 0.02082 4.69210 4.67526 191 C - - > 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 61 5.12297 0.02936 5.04682 4.10179 192 C - - > 1.38629 1.38629 1.38629 1.38629 0.00305 6.48783 6.48783 1.46634 0.26236 1.09861 0.40547 62 1.46040 1.90510 2.76053 0.58737 194 U - - > 1.38629 1.38629 1.38629 1.38629 0.01684 4.18792 6.48783 0.18972 1.75555 1.09861 0.40547 63 1.24960 2.70290 0.78765 1.65309 196 g - - > 1.38629 1.38629 1.38629 1.38629 0.00312 6.48783 6.43960 1.46634 0.26236 1.09861 0.40547 64 3.34990 0.60197 1.04980 2.70045 197 C - - > 1.38629 1.38629 1.38629 1.38629 0.00305 6.48768 6.48768 1.46634 0.26236 1.06672 0.42180 65 2.93624 0.64306 3.27564 0.95852 198 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00305 6.48767 6.48767 1.46634 0.26236 1.09861 0.40547 66 0.90795 1.78872 1.22776 1.99123 199 a - - ) 1.38629 1.38629 1.38629 1.38629 0.00305 6.48762 6.48762 1.46634 0.26236 1.09861 0.40547 67 2.86957 0.82168 1.05612 1.85930 200 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00305 6.48762 6.48762 1.46634 0.26236 1.09861 0.40547 68 2.05541 0.57617 1.35314 2.96645 201 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01217 6.48762 4.54977 1.46634 0.26236 1.09861 0.40547 69 2.03385 0.81085 1.06529 2.52499 202 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00308 6.47853 6.47853 1.46634 0.26236 0.55493 0.85358 70 1.86315 0.47044 1.79049 2.93347 203 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00306 6.48486 6.48486 1.46634 0.26236 0.53765 0.87735 71 0.33830 4.39474 2.86597 1.52440 204 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01534 4.29031 6.48762 0.20908 1.66777 1.09861 0.40547 72 1.56065 2.47231 0.39793 3.38420 206 G - - : 1.38629 1.38629 1.38629 1.38629 0.86713 0.54500 * 1.09967 0.40494 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Glu ACC bact-Glu-r2-022416 STATES 230 NODES 61 CLEN 72 W 1280 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 14:10:07 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Glu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Glu-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Glu-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Glu-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11401 EFFN 11401.000000 CKSUM 3378220249 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.3132 0.71893 ECMLC 0.67150 -6.78083 2.27753 1600000 525856 0.002282 ECMGC 0.36675 -34.14116 -22.64329 1600000 27127 0.014745 ECMLI 0.63206 -6.72742 2.74195 1600000 477008 0.002516 ECMGI 0.37118 -32.45098 -21.19403 1600000 26104 0.015323 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1280 2769 -18.403 -19.648 -0.020 -6.154 IL 1 1 2 1 4 17 39 1282 2771 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 40 1283 2773 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 253 - A - - MR 3 2 3 5 5 24 48 1283 2772 -6.783 -0.027 -18.246 -6.680 -19.350 1.345 -4.623 0.467 -4.762 D 4 2 3 5 5 15 36 1270 2760 -12.884 -8.239 -10.510 -11.941 -0.006 IR 5 5 3 5 5 21 48 1283 2772 -8.472 -0.006 -11.983 -10.151 -11.256 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 251 G C - - MP 6 5 3 10 6 26 48 1282 2771 -19.345 -4.358 -0.072 -18.061 -18.340 -18.735 -7.004 -11.964 -13.143 -2.690 -6.899 -13.739 -1.533 -2.369 -11.580 3.431 -9.521 2.091 -3.043 -12.999 -3.090 -12.108 ML 7 5 3 10 6 18 40 1279 2768 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 42 1278 2767 -14.099 -12.828 -1.360 -12.806 -0.714 -11.020 -2.410 1.903 -7.249 -3.907 D 9 5 3 10 6 15 36 1270 2760 -17.251 -15.949 -11.746 -12.428 -12.446 -0.001 IL 10 10 5 10 6 18 41 1281 2770 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 23 47 1281 2770 -10.866 -0.001 -14.377 -12.545 -13.651 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 249 g c - - MP 12 11 6 16 6 25 46 1280 2769 -19.350 -19.290 -0.000 -18.066 -15.761 -18.741 -13.587 -13.006 -13.549 -0.351 -4.917 -14.335 1.857 -13.256 -13.516 2.430 -8.617 1.313 1.874 -12.080 -6.162 -9.524 ML 13 11 6 16 6 18 40 1277 2767 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 40 1275 2764 -13.392 -12.121 -8.030 -12.099 -0.007 -10.313 -0.856 -7.347 1.779 -6.713 D 15 11 6 16 6 15 36 1270 2760 -17.251 -15.949 -11.746 -12.428 -12.446 -0.001 IL 16 16 5 16 6 18 40 1279 2768 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 41 1279 2768 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 248 C G - - MP 18 17 6 22 6 23 44 1278 2767 -19.350 -19.289 -0.004 -18.066 -8.350 -18.741 -16.218 -16.274 -15.637 -3.321 -10.222 -15.866 3.272 -14.939 -15.700 -1.249 -15.871 -3.441 2.517 -16.144 -11.751 -14.504 ML 19 17 6 22 6 18 40 1276 2765 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 39 1274 2763 -13.396 -12.125 -7.319 -12.103 -0.011 -10.316 -5.019 -3.048 -0.847 1.719 D 21 17 6 22 6 15 36 1270 2760 -17.251 -15.949 -9.726 -12.428 -12.446 -0.002 IL 22 22 5 22 6 18 40 1277 2766 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 40 1277 2766 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 247 C G - - MP 24 23 6 28 6 21 43 1276 2765 -19.346 -7.494 -0.052 -5.568 -6.838 -18.736 -16.088 -16.213 -15.537 0.562 -10.550 -15.772 3.414 -14.840 -15.599 1.210 -15.783 -14.301 -1.114 -15.996 0.125 -14.386 ML 25 23 6 28 6 18 39 1274 2764 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 38 1273 2762 -13.983 -12.712 -8.621 -12.690 -0.005 -10.904 -7.308 -9.081 1.996 -8.070 D 27 23 6 28 6 15 36 1270 2760 -17.249 -15.948 -11.745 -12.427 -12.444 -0.001 IL 28 28 5 28 6 18 40 1275 2765 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 21 42 1275 2764 -7.763 -0.010 -11.274 -9.442 -10.548 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 245 C G - - MP 30 29 6 34 6 20 41 1274 2763 -19.302 -19.241 -0.000 -14.649 -18.298 -18.693 -13.765 -13.476 -13.747 1.043 -12.593 -8.202 3.581 -13.257 -7.203 -3.327 -14.113 -7.537 0.635 -13.940 -1.739 -8.157 ML 31 29 6 34 6 19 40 1273 2762 -14.658 -15.004 -0.003 -9.412 -14.853 -12.383 -9.938 1.999 -10.551 -8.686 MR 32 29 6 34 6 16 37 1272 2761 -14.951 -13.680 -0.999 -13.658 -1.003 -11.871 -8.235 -10.007 1.998 -8.994 D 33 29 6 34 6 15 36 1270 2760 -17.249 -15.948 -11.745 -12.427 -12.444 -0.001 IL 34 34 5 34 6 17 39 1273 2763 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 38 1273 2762 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 244 c g - - MP 36 35 6 40 6 18 39 1272 2761 -4.265 -19.285 -0.078 -18.062 -18.342 -10.159 -13.763 -13.471 -13.750 -0.987 -8.490 -14.572 2.670 -13.262 -13.613 2.124 -14.118 -11.044 0.773 -4.217 1.584 -6.560 ML 37 35 6 40 6 16 37 1271 2760 -6.880 -7.226 -0.703 -1.635 -7.076 -4.606 -0.231 -0.523 -0.856 0.925 MR 38 35 6 40 6 15 36 1269 2759 -13.953 -12.682 -8.591 -12.660 -0.005 -10.874 1.428 -7.518 0.377 -7.430 D 39 35 6 40 6 15 36 1270 2760 -17.249 -15.948 -11.745 -12.427 -12.444 -0.001 IL 40 40 5 40 6 17 37 1271 2761 -11.851 -1.044 -0.958 -13.769 -14.545 -14.205 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 36 1270 2760 -9.922 -8.010 -13.433 -1.272 -0.783 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 242 u a - - MP 42 41 6 46 4 16 37 1270 2759 -18.538 -18.745 -0.018 -6.358 -13.480 -12.135 -13.310 1.262 -14.333 -13.938 -3.435 -13.938 -0.093 2.168 -13.971 -2.756 2.895 -4.666 -1.146 -12.257 ML 43 41 6 46 4 15 35 1269 2758 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 35 1268 2758 -1.700 -12.127 -9.995 -0.533 1.454 0.282 -7.285 -4.681 D 45 41 6 46 4 15 36 1270 2760 -13.733 -0.087 -4.334 -6.853 IL 46 46 5 46 4 16 36 1269 2758 -8.076 -8.760 -0.009 -11.245 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 37 1270 2760 -0.747 -1.308 -13.046 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - - - ML 48 47 6 50 3 15 35 1268 2757 -7.245 -0.010 -18.136 -6.600 -13.118 -6.255 1.991 D 49 47 6 50 3 13 33 1266 2756 -15.613 -1.810 -0.484 IL 50 50 3 50 3 15 35 1268 2757 -6.961 -0.013 -9.661 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - C - - - ML 51 50 3 53 2 14 34 1267 2756 -20.148 -0.000 -1.127 1.052 0.393 -2.682 D 52 50 3 53 2 13 33 1266 2755 -13.394 -0.000 IL 53 53 3 53 2 14 34 1267 2757 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 121 55 13 33 1266 2755 [ BEGR 43 ] - - - - - - S 55 54 1 56 3 1 3 132 285 -19.518 -0.000 -18.172 IL 56 56 2 56 3 1 3 137 290 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 195 - U - - - ML 57 56 2 59 3 1 3 132 285 -19.518 -0.125 -3.586 0.313 -1.229 -2.248 1.084 D 58 56 2 59 3 0 1 147 300 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 133 286 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 196 - A - - - ML 60 59 3 62 3 1 2 116 269 -6.786 -0.032 -6.277 1.528 -4.756 0.109 -14.167 D 61 59 3 62 3 0 1 150 304 -0.578 -1.601 -11.743 IL 62 62 3 62 3 1 2 154 307 -0.174 -3.142 -16.092 0.000 0.000 0.000 0.000 [ MATL 46 ] 216 - A - - - ML 63 62 3 65 3 1 1 25 43 -2.049 -0.511 -4.145 1.806 -4.325 -1.832 -2.537 D 64 62 3 65 3 0 1 24 42 -14.539 -0.003 -8.931 IL 65 65 3 65 3 1 3 25 43 -12.146 -0.000 -14.846 0.000 0.000 0.000 0.000 [ MATL 47 ] 218 - C - - - ML 66 65 3 68 5 1 2 24 42 -18.368 -0.000 -18.184 -18.396 -19.287 -1.369 1.590 -2.243 -1.353 D 67 65 3 68 5 0 0 23 41 -14.732 -0.001 -13.993 -12.368 -10.705 IL 68 68 3 68 5 1 1 27 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 219 238 A U - - MP 69 68 3 73 6 2 2 23 41 -6.649 -19.318 -0.045 -18.095 -5.604 -18.770 -13.344 -9.285 -8.844 3.125 -14.284 -13.759 -0.874 -2.388 -13.600 1.815 -13.847 0.591 0.536 -4.865 -5.261 -12.128 ML 70 68 3 73 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 23 41 -9.600 -8.299 -4.096 -4.778 -4.795 -0.210 IL 73 73 5 73 6 1 1 22 40 -9.509 -9.771 -0.005 -11.427 -12.203 -11.863 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 25 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 221 237 c g - - MP 75 74 6 79 6 2 2 21 39 -19.349 -19.288 -0.000 -18.065 -15.700 -18.740 -13.644 -13.329 -11.045 -2.150 -6.598 -14.483 2.678 -13.169 -13.505 2.298 -7.043 1.099 1.041 -13.820 -2.087 -8.875 ML 76 74 6 79 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 20 38 -15.190 -13.919 -0.003 -13.897 -9.031 -12.111 -9.935 1.999 -10.547 -8.682 D 78 74 6 79 6 0 0 22 41 -9.600 -8.299 -4.096 -4.778 -4.795 -0.210 IL 79 79 5 79 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 222 236 G C - - MP 81 80 6 85 6 2 2 19 37 -7.403 -19.318 -0.009 -18.095 -18.375 -18.770 -17.201 -8.988 -19.067 -0.570 -18.731 -9.778 1.290 -18.862 -5.474 3.675 -11.670 -4.023 -13.464 -5.357 -15.514 -18.159 ML 82 80 6 85 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 24 42 -7.275 -6.004 -1.164 -5.982 -1.116 -4.196 0.032 0.321 -0.659 0.131 D 84 80 6 85 6 0 0 22 41 -9.600 -8.299 -4.096 -4.778 -4.795 -0.210 IL 85 85 5 85 6 1 1 19 37 -8.763 -9.025 -0.008 -10.681 -11.457 -11.117 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 224 235 G C - - MP 87 86 6 91 6 2 2 16 35 -19.379 -19.318 -0.000 -18.095 -18.375 -18.770 -17.137 -8.074 -18.853 -0.003 -18.859 -15.164 -13.237 -18.542 -4.031 3.901 -15.512 -8.174 -13.577 -15.608 -15.651 -17.703 ML 88 86 6 91 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 22 40 -9.600 -8.299 -4.096 -4.778 -4.795 -0.210 IL 91 91 5 91 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 225 234 G C - - MP 93 92 6 97 4 2 2 14 33 -18.609 -18.816 -0.000 -17.230 -17.327 -4.691 -19.730 -2.763 -18.951 -15.093 -13.238 -19.152 -15.305 3.980 -15.496 -7.933 -13.605 -5.003 -15.692 -18.864 ML 94 92 6 97 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 22 40 -5.090 -4.771 -2.787 -0.342 IL 97 97 5 97 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 226 - U - - - ML 99 98 6 101 3 1 1 12 30 -19.518 -0.000 -18.172 -7.445 -7.383 -7.132 1.993 D 100 98 6 101 3 0 0 18 37 -6.869 -2.382 -0.323 IL 101 101 3 101 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 227 - U - - - ML 102 101 3 104 3 1 1 10 29 -19.518 -0.000 -18.172 -5.952 -7.136 -3.837 1.966 D 103 101 3 104 3 0 0 17 36 -6.869 -2.382 -0.323 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 228 - C - - - ML 105 104 3 107 3 1 1 9 28 -19.518 -0.000 -18.172 -6.998 1.975 -5.436 -4.739 D 106 104 3 107 3 0 0 16 35 -6.869 -2.382 -0.323 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 229 - G - - - ML 108 107 3 110 3 1 1 8 26 -19.518 -0.000 -18.172 -1.192 -6.995 1.826 -6.988 D 109 107 3 110 3 0 0 15 34 -6.869 -2.382 -0.323 IL 110 110 3 110 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 230 - A - - - ML 111 110 3 113 3 1 1 6 24 -19.518 -0.000 -18.172 1.992 -7.005 -6.998 -7.003 D 112 110 3 113 3 0 0 14 32 -6.869 -2.382 -0.323 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 231 - A - - - ML 114 113 3 116 3 1 1 5 9 -7.493 -0.008 -13.043 1.199 -1.830 -0.820 -0.224 D 115 113 3 116 3 0 0 4 8 -6.869 -0.801 -1.261 IL 116 116 3 116 3 1 1 5 9 -6.754 -0.016 -9.455 0.000 0.000 0.000 0.000 [ MATL 59 ] 233 - U - - - ML 117 116 3 119 2 1 1 1 1 * 0.000 -5.458 -1.247 -7.328 1.828 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 121 54 1 122 1 3 14 1244 2734 0.000 [ BIF 13 ] - - - - - - B 122 121 1 123 173 3 14 1244 2734 [ BEGL 14 ] - - - - - - S 123 122 1 124 4 0 2 57 105 -0.017 -8.249 -6.905 -17.557 [ MATP 15 ] 13 52 G C - - MP 124 123 1 128 6 2 6 57 105 -7.350 -19.302 -0.009 -18.078 -18.358 -18.753 -14.871 -13.440 -3.198 0.048 -16.357 -15.897 -1.500 -15.248 -14.770 3.738 -15.231 0.124 -3.763 -15.123 -13.488 -13.682 ML 125 123 1 128 6 1 2 55 103 -12.029 -12.376 -7.090 -0.013 -12.225 -9.755 1.992 -7.461 -6.766 -6.919 MR 126 123 1 128 6 1 1 53 101 -13.895 -12.624 -8.533 -12.602 -3.330 -0.156 -1.340 1.207 -5.849 0.355 D 127 123 1 128 6 0 0 52 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 2 56 104 -8.799 -9.061 -0.008 -10.717 -11.493 -11.153 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 2 56 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 51 U A - - MP 130 129 6 134 6 2 6 55 103 -19.362 -19.302 -0.000 -18.078 -12.743 -18.753 -16.367 -16.589 -15.712 -1.946 -14.081 -15.878 0.080 -14.987 -9.891 0.456 -15.939 -14.880 3.734 -10.265 -7.265 -14.607 ML 131 129 6 134 6 1 2 54 102 -12.029 -12.376 -7.090 -0.013 -12.225 -9.755 -7.131 -6.446 -8.078 1.992 MR 132 129 6 134 6 1 2 52 100 -10.617 -9.346 -5.255 -9.325 -0.052 -7.538 1.961 -5.126 -4.570 -4.832 D 133 129 6 134 6 0 0 52 100 -16.360 -15.058 -10.855 -0.641 -11.555 -1.483 IL 134 134 5 134 6 1 2 54 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 2 54 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 50 C G - - MP 136 135 6 140 6 2 6 53 101 -19.362 -19.301 -0.000 -18.078 -18.358 -18.753 -16.195 -16.360 -8.921 -3.169 -9.023 -6.374 3.792 -14.900 -15.682 -0.457 -15.847 -14.519 0.096 -16.083 -2.160 -14.472 ML 137 135 6 140 6 1 2 53 101 -0.011 -13.671 -8.386 -8.080 -13.521 -11.051 1.996 -8.697 -7.945 -8.066 MR 138 135 6 140 6 1 2 51 99 -10.835 -9.564 -5.473 -9.542 -0.044 -7.756 -2.652 -2.676 -1.077 1.683 D 139 135 6 140 6 0 0 46 94 -14.882 -13.580 -9.377 -10.060 -10.077 -0.005 IL 140 140 5 140 6 1 2 52 100 -9.221 -9.483 -0.006 -11.139 -11.915 -11.575 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 2 52 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 18 49 u g - - MP 142 141 6 146 4 2 6 51 99 -6.259 -18.811 -0.019 -17.225 1.803 -2.654 -2.649 -2.653 -6.736 -15.883 1.019 -4.875 0.708 -12.823 -15.954 -15.002 0.135 -5.341 2.848 -7.140 ML 143 141 6 146 4 1 2 50 98 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 4 1 2 50 98 -8.848 -7.877 -0.062 -4.805 -2.652 -2.676 -1.077 1.683 D 145 141 6 146 4 0 0 46 94 -10.306 -9.987 -8.003 -0.008 IL 146 146 5 146 4 1 2 51 99 -9.220 -0.347 -2.240 -12.389 0.000 0.000 0.000 0.000 IR 147 147 6 147 3 1 2 50 98 -7.626 -0.008 -10.326 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 148 147 6 150 3 1 4 49 97 -19.514 -0.000 -18.168 1.905 -14.700 -2.080 -5.803 D 149 147 6 150 3 0 0 46 93 -12.411 -7.924 -0.006 IL 150 150 3 150 3 1 2 49 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 151 150 3 153 3 1 3 48 96 -19.514 -0.000 -18.168 -0.080 -3.990 1.527 -3.193 D 152 150 3 153 3 0 0 45 93 -12.411 -7.924 -0.006 IL 153 153 3 153 3 1 2 49 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - u - - - ML 154 153 3 156 3 1 2 47 95 -2.328 -0.320 -18.168 -0.134 0.293 -1.153 0.500 D 155 153 3 156 3 0 0 45 93 -12.411 -0.013 -6.803 IL 156 156 3 156 3 1 2 47 95 -3.049 -0.186 -14.766 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - G - - - ML 157 156 3 159 3 1 2 45 93 -7.296 -0.009 -18.172 -6.810 -15.812 1.991 -5.911 D 158 156 3 159 3 0 0 43 91 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 2 45 93 -6.947 -0.014 -9.647 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - G - - - ML 160 159 3 162 3 1 2 44 92 -19.518 -0.000 -18.172 -4.080 -7.311 1.974 -7.474 D 161 159 3 162 3 0 0 41 89 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 45 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - U - - - ML 163 162 3 165 3 1 1 43 91 -1.105 -1.503 -2.455 -5.279 0.786 -6.074 1.160 D 164 162 3 165 3 0 0 33 81 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 2 44 92 -0.554 -1.649 -17.455 0.000 0.000 0.000 0.000 [ MATL 25 ] 46 - U - - - ML 166 165 3 168 3 1 1 5 24 -19.228 -0.000 -17.882 -1.939 -0.326 -3.236 1.503 D 167 165 3 168 3 0 0 5 23 -18.482 -0.000 -12.874 IL 168 168 3 168 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 47 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.922 -4.386 -3.285 -4.044 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 173 122 1 174 3 0 4 1227 2716 -19.518 -0.000 -18.172 IL 174 174 2 174 3 1 1 1228 2717 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 53 - A - - - ML 175 174 2 177 5 1 5 1227 2716 -7.476 -0.008 -18.266 -18.479 -19.370 1.266 -1.559 0.217 -3.418 D 176 174 2 177 5 0 0 1222 2712 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 1227 2716 -7.811 -0.010 -9.490 -11.322 -10.596 0.000 0.000 0.000 0.000 [ MATP 30 ] 55 194 C G - - MP 178 177 3 182 6 2 4 1226 2715 -6.932 -19.318 -0.012 -18.095 -18.375 -18.770 -13.715 -4.217 -13.711 -1.665 -2.910 -14.548 3.730 -10.694 -13.570 -2.742 -14.081 -4.626 0.066 -13.896 -0.015 -10.085 ML 179 177 3 182 6 1 1 1222 2712 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 1218 2707 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 3 182 6 0 0 1215 2704 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 2 1218 2708 -9.229 -9.491 -1.381 -11.147 -0.708 -11.583 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 1224 2713 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 57 193 C G - - MP 184 183 6 188 6 2 6 1224 2713 -7.508 -19.311 -0.008 -18.088 -18.367 -18.763 -13.684 -13.385 -13.682 -0.007 -1.275 -14.523 3.527 -13.200 -13.541 -0.158 -14.053 -2.902 0.742 -13.866 -2.490 -2.475 ML 185 183 6 188 6 1 1 1220 2710 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 6 1 1 1213 2702 -13.183 -11.912 -7.821 -11.891 -7.024 -0.018 -8.147 -7.304 -9.193 1.996 D 187 183 6 188 6 0 0 1213 2703 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 1223 2712 -8.652 -8.914 -0.009 -10.570 -11.346 -11.006 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 1222 2712 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 59 192 G C - - MP 190 189 6 194 6 2 5 1222 2711 -3.632 -19.311 -0.212 -4.156 -15.707 -18.763 -13.511 -12.158 -13.342 1.354 -14.426 -13.969 0.523 -13.990 -9.039 3.304 -14.006 -8.358 1.087 -10.300 -11.523 -8.329 ML 191 189 6 194 6 1 1 1218 2708 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 1218 2707 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 1212 2701 -15.790 -14.488 -10.285 -10.967 -10.985 -0.003 IL 194 194 5 194 6 1 5 1234 2723 -0.189 -3.024 -13.713 -17.450 -18.226 -17.886 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 5 1225 2715 -0.243 -2.692 -17.821 -15.988 -17.094 0.000 0.000 0.000 0.000 [ MATP 33 ] 70 183 C G - - MP 196 195 6 200 6 2 5 1219 2708 -19.289 -6.407 -0.017 -18.004 -18.284 -18.679 -15.775 -14.816 -15.603 -5.379 -14.866 -16.596 3.486 -15.209 -15.403 2.072 -15.825 -3.616 -11.452 -16.458 -1.045 -14.345 ML 197 195 6 200 6 1 2 1217 2706 -16.092 -16.438 -11.153 -0.001 -16.288 -13.818 1.999 -11.313 -10.553 -10.647 MR 198 195 6 200 6 1 1 1216 2706 -7.279 -6.008 -1.160 -5.986 -1.120 -4.200 0.029 0.326 -0.663 0.130 D 199 195 6 200 6 0 0 1212 2701 -15.790 -14.488 -10.285 -10.967 -10.985 -0.003 IL 200 200 5 200 6 1 1 1218 2707 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 1218 2707 -8.775 -0.005 -12.286 -10.454 -11.560 0.000 0.000 0.000 0.000 [ MATP 34 ] 71 181 C G - - MP 202 201 6 206 4 2 3 1217 2706 -18.518 -18.725 -0.000 -17.140 -14.357 -14.107 -14.256 0.569 -7.523 -14.949 3.540 -13.728 -14.155 1.240 -14.599 -6.089 -3.037 -14.495 -2.264 -2.526 ML 203 201 6 206 4 1 2 1216 2705 -13.176 -13.359 -0.001 -12.088 -9.885 -11.648 1.999 -10.637 MR 204 201 6 206 4 1 1 1214 2703 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 205 201 6 206 4 0 0 1212 2701 -11.213 -10.894 -8.910 -0.004 IL 206 206 5 206 4 1 1 1216 2706 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 1216 2705 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 72 - C - - - ML 208 207 6 210 3 1 1 1215 2704 -19.511 -0.026 -5.820 -5.424 1.227 -14.057 0.709 D 209 207 6 210 3 0 0 1212 2701 -13.322 -8.835 -0.003 IL 210 210 3 210 3 1 1 1215 2704 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 73 - U - - - ML 211 210 3 213 3 1 2 1214 2703 -19.485 -0.000 -18.139 -13.064 -2.481 -6.924 1.931 D 212 210 3 213 3 0 0 1212 2701 -15.476 -10.989 -0.001 IL 213 213 3 213 3 1 1 1214 2703 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 74 - u - - - ML 214 213 3 216 3 1 1 1213 2702 -19.485 -0.000 -18.139 0.010 -0.251 -0.632 0.592 D 215 213 3 216 3 0 0 1212 2701 -15.476 -0.002 -9.868 IL 216 216 3 216 3 1 1 1210 2699 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 75 - u - - - ML 217 216 3 219 3 1 1 1212 2701 -19.518 -0.000 -18.172 -0.624 0.094 -0.219 0.511 D 218 216 3 219 3 0 0 1164 2653 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 1207 2697 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 76 - u - - - ML 220 219 3 222 3 1 1 1211 2700 -19.518 -0.000 -18.172 0.094 -0.091 -0.253 0.207 D 221 219 3 222 3 0 0 1126 2615 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 1204 2693 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 77 - A - - - ML 223 222 3 225 3 1 1 1210 2699 -1.716 -0.523 -18.172 1.666 -0.790 -3.467 -2.669 D 224 222 3 225 3 0 0 959 2448 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 1305 2794 -0.018 -6.346 -21.541 0.000 0.000 0.000 0.000 [ MATL 41 ] 180 - C - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 -0.554 1.512 -3.549 -1.391 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Glu ACC bact-Glu-r2-022416 LENG 72 MAXL 1266 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 14:10:07 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Glu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Glu-r2-022416.sto NSEQ 11401 EFFN 25.195091 CKSUM 3378220249 STATS LOCAL MSV -8.1212 0.71893 STATS LOCAL VITERBI -9.0490 0.71893 STATS LOCAL FORWARD -3.7847 0.71893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.51984 1.32278 1.24945 1.47755 1.38629 1.38629 1.38629 1.38629 0.00891 5.41774 5.41774 1.46634 0.26236 0.00000 * 1 2.58498 2.86104 0.20127 3.00179 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00891 5.41774 5.41774 1.46634 0.26236 1.09861 0.40547 2 2.46171 1.43147 0.82746 1.43299 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00890 5.42120 5.41814 1.46634 0.26236 1.09861 0.40547 3 3.35054 0.59891 2.73344 1.04832 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01168 5.42118 4.93533 1.46634 0.26236 1.09963 0.40495 4 2.25925 0.53396 1.85941 1.87386 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01690 5.41844 4.39619 1.46634 0.26236 1.28886 0.32239 5 2.03015 0.42135 3.04333 1.80274 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00898 5.41052 5.41052 1.46634 0.26236 1.19829 0.35912 6 2.71951 0.96993 1.38223 1.19084 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.03441 3.55408 5.25508 0.28549 1.39289 0.76679 0.62456 7 1.79334 2.55422 1.04924 0.90229 8 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02936 5.42322 3.70831 1.46634 0.26236 1.15432 0.37873 8 4.03597 4.04836 4.41151 0.04841 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.01494 4.56688 5.41655 0.70878 0.67775 1.21706 0.35112 9 1.94224 0.78563 1.17957 2.37113 12 c - - , 1.38629 1.38629 1.38629 1.38629 0.00961 5.42311 5.26948 1.46634 0.26236 0.75954 0.63089 10 2.15595 3.04949 0.22804 3.20067 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01438 4.61528 5.43179 0.72937 0.65819 1.55547 0.23710 11 3.55855 2.26651 2.37033 0.25567 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.00892 5.43179 5.40278 1.46634 0.26236 0.85559 0.55344 12 3.73161 0.22326 2.80227 2.15880 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.01624 4.44382 5.43608 0.62624 0.76485 1.32262 0.30984 13 1.44514 1.71698 1.88742 0.83651 18 u - - < 1.38629 1.38629 1.38629 1.38629 0.02073 4.12497 5.43608 0.47261 0.97650 1.14406 0.38349 14 0.08357 4.83181 2.80834 4.43118 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00874 5.43693 5.43693 1.46634 0.26236 1.26913 0.33000 15 1.48781 3.45975 0.36317 3.05275 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00874 5.43693 5.43693 1.46634 0.26236 1.26913 0.33000 16 1.40594 1.26644 2.04482 1.06820 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.20926 1.69031 5.43695 0.16802 1.86653 0.82589 0.57598 17 4.85888 6.25356 0.01655 5.00166 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01455 4.59535 5.43936 0.71226 0.67439 1.09861 0.40547 18 3.97116 5.54980 0.02878 5.17896 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43936 5.43936 1.46634 0.26236 1.09861 0.40547 19 3.44942 0.88892 4.10637 0.61495 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.90184 0.85600 1.77595 1.14551 0.38282 1.09861 0.40547 20 2.43879 1.64010 3.15596 0.39130 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01045 5.25908 5.25908 1.46634 0.26236 0.05002 3.02028 21 0.09055 3.71786 3.36645 3.58358 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02061 4.29510 4.99612 0.54806 0.86292 1.09861 0.40547 22 1.10614 2.47797 0.74857 2.18737 49 g - - > 1.38629 1.38629 1.38629 1.38629 0.01622 5.43693 4.44467 1.46634 0.26236 1.26913 0.33000 23 2.36810 2.84581 0.19776 3.58689 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.00881 5.42952 5.42952 1.46634 0.26236 1.65920 0.21108 24 0.26837 2.40059 2.19043 3.41600 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.00881 5.42952 5.42952 1.46634 0.26236 0.71481 0.67195 25 3.40740 0.31682 2.82461 1.71993 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.00875 5.43638 5.43638 1.46634 0.26236 0.78288 0.61081 26 0.54650 2.37350 1.30241 2.88240 53 A - - , 1.38629 1.38629 1.38629 1.38629 0.01386 4.66498 5.43936 0.75632 0.63373 1.09861 0.40547 27 2.91609 0.34575 2.83262 1.71865 55 C - - < 1.38629 1.38629 1.38629 1.38629 0.01158 4.93750 5.43936 0.95463 0.48606 1.09861 0.40547 28 2.45835 0.46087 2.29330 1.69960 57 C - - < 1.38629 1.38629 1.38629 1.38629 0.01838 4.67919 4.71901 0.76562 0.62558 1.09861 0.40547 29 1.74316 2.31999 0.52091 2.01906 59 G - - < 1.38629 1.38629 1.38629 1.38629 0.08525 2.55955 5.43154 2.08011 0.13344 1.39999 0.28316 30 2.91373 0.46659 1.40057 2.62928 70 C - - < 1.38629 1.38629 1.38629 1.38629 0.00876 5.43475 5.43475 1.46634 0.26236 1.39753 0.28396 31 2.24154 0.51366 1.68035 2.21552 71 C - - < 1.38629 1.38629 1.38629 1.38629 0.00876 5.43477 5.43477 1.46634 0.26236 1.39999 0.28316 32 3.51132 0.57332 4.41961 0.93026 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02504 5.43476 3.89394 1.46634 0.26236 1.39999 0.28316 33 4.08438 2.91303 4.43308 0.08667 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00891 5.41863 5.41863 1.46634 0.26236 2.04428 0.13866 34 1.32560 1.57756 1.78634 1.02080 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00891 5.41863 5.41863 1.46634 0.26236 0.29968 1.35113 35 1.61917 1.38495 1.57897 1.06301 75 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43936 5.43936 1.46634 0.26236 1.09861 0.40547 36 1.28388 1.49476 1.59225 1.21987 76 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43936 5.43936 1.46634 0.26236 1.09861 0.40547 37 0.26148 1.98578 3.33209 2.86296 77 A - - _ 1.38629 1.38629 1.38629 1.38629 0.33403 1.27431 5.43936 4.39022 0.01248 1.09861 0.40547 38 1.78037 0.41168 3.37599 2.00468 180 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06588 5.43937 2.82319 1.46634 0.26236 1.09861 0.40547 39 2.57199 1.88192 0.43880 2.06742 181 G - - > 1.38629 1.38629 1.38629 1.38629 0.01999 4.18666 5.38272 0.52353 0.89753 2.75260 0.06589 40 3.32076 1.40216 0.37400 3.51223 183 G - - > 1.38629 1.38629 1.38629 1.38629 0.09000 2.50747 5.38273 1.85556 0.17004 0.21667 1.63578 41 2.09527 0.55180 2.24673 1.63318 192 C - - > 1.38629 1.38629 1.38629 1.38629 0.00876 5.43477 5.43477 1.46634 0.26236 0.67964 0.70684 42 1.79246 2.45566 0.45232 2.19380 193 G - - > 1.38629 1.38629 1.38629 1.38629 0.00872 5.43936 5.43936 1.46634 0.26236 1.09861 0.40547 43 2.10086 2.97584 0.27123 2.74569 194 G - - > 1.38629 1.38629 1.38629 1.38629 0.00872 5.43936 5.43936 1.46634 0.26236 1.09861 0.40547 44 1.18474 2.05365 2.47065 0.73110 195 u - - , 1.38629 1.38629 1.38629 1.38629 0.03410 5.43935 3.53412 1.46634 0.26236 1.09861 0.40547 45 0.34358 4.06664 1.33523 4.55221 196 A - - , 1.38629 1.38629 1.38629 1.38629 0.08268 2.74989 4.17218 2.05512 0.13705 0.26050 1.47258 46 0.17206 3.55814 2.59458 2.90222 216 A - - , 1.38629 1.38629 1.38629 1.38629 0.32593 1.50193 2.89230 0.03896 3.26458 0.45589 1.00480 47 2.21040 0.36361 2.84173 1.98885 218 C - - , 1.38629 1.38629 1.38629 1.38629 0.00919 5.38754 5.38754 1.46634 0.26236 0.14733 1.98781 48 0.82564 2.66621 0.95599 2.22471 219 a - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.31565 3.77457 0.55810 0.84933 1.10016 0.40469 49 2.90527 0.98055 0.96471 1.66564 221 g - - < 1.38629 1.38629 1.38629 1.38629 0.00890 5.42055 5.41734 1.46634 0.26236 0.32161 1.29091 50 2.52107 2.01499 0.27892 3.51635 222 G - - < 1.38629 1.38629 1.38629 1.38629 0.01413 4.63685 5.43932 0.73825 0.64999 1.09801 0.40577 51 2.78259 5.45162 0.07339 5.38291 224 G - - < 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 52 3.91246 5.57096 0.02956 5.23390 225 G - - < 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 53 4.17922 4.06599 4.59968 0.04344 226 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 54 3.87383 3.87100 3.71138 0.06834 227 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 55 4.73074 0.03673 4.60994 4.05736 228 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 56 2.24253 4.61658 0.13850 4.32267 229 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 57 0.01658 5.35822 5.07781 5.20246 230 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 58 0.65962 2.31778 1.89101 1.45439 231 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01391 4.67104 5.41564 0.76029 0.63023 1.09553 0.40701 59 3.78604 2.26974 4.39864 0.14887 233 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00874 5.43925 5.43463 1.46634 0.26236 1.08288 0.41343 60 5.46123 0.03218 5.41023 3.77434 234 C - - > 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 61 4.80821 0.08432 5.22516 2.69830 235 C - - > 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 62 3.70739 0.30526 1.97480 2.30524 236 C - - > 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 63 1.82355 1.27485 0.92684 1.81235 237 g - - > 1.38629 1.38629 1.38629 1.38629 0.00872 5.43934 5.43934 1.46634 0.26236 1.10016 0.40469 64 2.34582 1.19260 2.64575 0.63516 238 U - - > 1.38629 1.38629 1.38629 1.38629 0.03508 3.52828 5.27507 0.55820 0.84919 1.09553 0.40701 65 0.89673 1.23124 2.20067 1.66368 242 a - - ) 1.38629 1.38629 1.38629 1.38629 0.04402 3.62226 4.11407 0.29873 1.35386 0.99261 0.46300 66 1.88879 1.41300 0.63936 2.55488 244 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02807 5.42656 3.76014 1.46634 0.26236 1.74360 0.19224 67 2.00462 3.21579 0.37792 1.96699 245 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01413 4.65155 5.40753 0.76838 0.62318 0.64054 0.74868 68 2.44590 1.91254 0.42906 2.16694 247 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00884 5.42659 5.42659 1.46634 0.26236 1.74931 0.19103 69 1.09215 2.91318 0.57809 3.01121 248 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00884 5.42659 5.42659 1.46634 0.26236 1.74931 0.19103 70 1.49773 1.15384 1.37499 1.56975 249 c - - ) 1.38629 1.38629 1.38629 1.38629 0.05387 3.03559 5.42660 0.17398 1.83454 1.74931 0.19103 71 3.28346 0.48421 2.78975 1.25567 251 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01714 4.37419 5.42658 0.59417 0.80301 0.42739 1.05616 72 0.46620 3.89282 1.10779 3.81932 253 A - - : 1.38629 1.38629 1.38629 1.38629 0.84919 0.55820 * 1.09156 0.40901 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Gly ACC bact-Gly-r2-022416 STATES 239 NODES 64 CLEN 75 W 1111 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 15:14:12 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gly-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gly-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Gly-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gly-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17424 EFFN 17424.000000 CKSUM 32522922 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.0469 0.71884 ECMLC 0.57388 -9.70058 1.42473 1600000 711133 0.001687 ECMGC 0.37726 -26.41556 -14.04643 1600000 42525 0.009406 ECMLI 0.54173 -10.11995 1.58095 1600000 679298 0.001767 ECMGI 0.39012 -25.03812 -13.19034 1600000 40683 0.009832 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1111 2403 -19.015 -20.260 -0.694 -1.389 IL 1 1 2 1 4 11 31 1114 2406 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 12 33 1115 2407 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 227 - A - - MR 3 2 3 5 3 19 39 1114 2406 -19.729 -0.000 -18.047 2.000 -15.354 -14.634 -14.684 D 4 2 3 5 3 10 28 1110 2402 -20.128 -15.306 -0.000 IR 5 5 3 5 3 12 33 1114 2406 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 226 - C - - MR 6 5 3 8 3 18 38 1113 2405 -19.729 -0.000 -18.047 -16.548 2.000 -17.867 -14.569 D 7 5 3 8 3 10 28 1110 2402 -20.128 -15.306 -0.000 IR 8 8 3 8 3 12 33 1113 2405 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 225 - C - - MR 9 8 3 11 3 17 37 1112 2404 -19.729 -0.000 -18.047 -16.548 2.000 -17.867 -14.569 D 10 8 3 11 3 10 28 1110 2402 -20.128 -0.127 -3.571 IR 11 11 3 11 3 11 30 1112 2404 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 224 - U - - MR 12 11 3 14 5 17 36 1111 2403 -3.428 -0.146 -18.831 -8.262 -19.935 -1.875 -3.797 -6.827 1.867 D 13 11 3 14 5 9 23 1105 2397 -14.685 -10.040 -5.485 -13.742 -0.034 IR 14 14 3 14 5 16 36 1111 2403 -4.050 -0.090 -15.993 -14.161 -15.267 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 221 G C - - MP 15 14 3 19 6 16 35 1110 2401 -19.939 -19.878 -0.000 -18.655 -18.935 -13.968 -17.768 -14.499 -19.696 -2.888 -19.453 -15.696 -1.227 -19.310 -15.861 3.939 -16.065 -3.337 -14.148 -16.150 -16.226 -18.615 ML 16 14 3 19 6 12 31 1108 2400 -10.488 -10.834 -5.548 -0.039 -10.684 -8.213 -5.167 1.964 -5.674 -4.263 MR 17 14 3 19 6 13 28 1106 2398 -13.112 -11.841 -0.954 -11.819 -1.052 -10.033 0.993 0.382 -4.507 -0.595 D 18 14 3 19 6 9 22 1105 2397 -19.022 -17.720 -13.517 -14.199 -14.217 -0.000 IL 19 19 5 19 6 11 30 1109 2401 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 11 30 1108 2400 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 220 C G - - MP 21 20 6 25 6 16 33 1108 2399 -19.941 -19.881 -0.005 -18.657 -8.206 -19.332 -16.871 -17.027 -2.521 -5.690 -14.645 -16.445 3.817 -6.196 -16.332 0.397 -3.141 -6.692 -2.674 -16.755 -3.324 -15.132 ML 22 20 6 25 6 11 30 1107 2398 -10.488 -10.834 -0.046 -5.243 -10.684 -8.213 -5.167 1.964 -5.674 -4.263 MR 23 20 6 25 6 11 27 1103 2395 -12.078 -10.807 -6.716 -10.786 -0.019 -8.999 -4.149 -0.720 1.721 -4.669 D 24 20 6 25 6 9 22 1105 2397 -19.024 -17.723 -13.520 -0.273 -14.219 -2.539 IL 25 25 5 25 6 11 27 1107 2398 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 11 27 1106 2398 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 219 G C - - MP 27 26 6 31 6 14 31 1106 2397 -19.938 -19.877 -0.027 -5.733 -18.933 -19.328 -13.935 -5.635 -13.755 -0.379 -14.885 -5.881 0.412 -14.444 -14.183 3.775 -14.429 -3.990 -3.827 -4.976 -11.959 -7.452 ML 28 26 6 31 6 13 31 1107 2399 -0.002 -15.952 -10.667 -10.361 -15.802 -13.332 1.999 -10.841 -10.079 -10.177 MR 29 26 6 31 6 12 26 1102 2394 -13.708 -12.437 -1.692 -12.415 -0.536 -10.629 -2.149 1.836 -6.586 -2.360 D 30 26 6 31 6 9 20 1095 2387 -16.487 -15.185 -10.982 -11.664 -11.682 -0.002 IL 31 31 5 31 6 13 30 1106 2398 -1.001 -12.760 -1.000 -14.415 -15.191 -14.852 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 11 27 1104 2396 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 218 G C - - MP 33 32 6 37 6 12 29 1104 2396 -19.952 -19.891 -0.004 -18.667 -12.973 -8.688 -14.291 -9.206 -14.135 0.727 -15.267 -14.642 -1.536 -14.800 -10.609 3.676 -14.715 -5.238 -2.448 -13.961 0.006 -13.091 ML 34 32 6 37 6 13 26 1101 2393 -15.083 -15.429 -3.198 -0.167 -15.279 -12.809 -8.887 -10.657 1.999 -9.644 MR 35 32 6 37 6 12 24 1099 2391 -13.180 -11.909 -2.713 -11.887 -0.241 -10.101 -4.804 1.659 -1.680 -1.019 D 36 32 6 37 6 9 20 1095 2387 -16.487 -15.185 -10.982 -11.664 -11.682 -0.002 IL 37 37 5 37 6 11 26 1103 2394 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 11 26 1102 2394 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 217 g c - - MP 39 38 6 43 6 14 27 1102 2394 -19.952 -7.265 -0.024 -18.667 -6.669 -19.342 -3.052 -2.583 -13.733 2.517 -14.863 -14.329 1.105 -14.423 -5.269 2.780 -12.012 -0.874 -1.907 -4.824 -3.416 -10.618 ML 40 38 6 43 6 13 25 1100 2392 -14.918 -15.264 -9.979 -0.002 -15.114 -12.644 -8.725 -10.496 1.998 -9.483 MR 41 38 6 43 6 11 23 1098 2390 -13.008 -11.737 -6.386 -11.715 -0.020 -9.929 -7.239 1.991 -7.705 -6.282 D 42 38 6 43 6 9 20 1095 2387 -17.008 -15.706 -11.503 -12.185 -12.203 -0.001 IL 43 43 5 43 6 11 25 1101 2393 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 12 26 1101 2393 -8.581 -0.006 -12.093 -10.260 -11.366 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 215 a u - - MP 45 44 6 49 6 12 25 1100 2392 -5.812 -19.877 -0.074 -14.222 -18.933 -4.973 -9.367 -5.888 -11.963 2.998 -7.140 -15.073 1.248 -13.750 -5.896 -1.511 -10.087 -8.663 1.881 -4.047 0.580 -8.961 ML 46 44 6 49 6 12 24 1099 2391 -14.918 -15.264 -0.002 -9.673 -15.114 -12.644 1.999 -10.182 -9.417 -9.522 MR 47 44 6 49 6 10 22 1097 2389 -15.081 -13.810 -8.847 -13.788 -0.061 -4.674 -2.465 -0.088 0.984 -0.152 D 48 44 6 49 6 9 20 1095 2387 -17.008 -15.706 -11.503 -12.185 -12.203 -0.001 IL 49 49 5 49 6 13 24 1100 2391 -1.357 -11.873 -0.715 -13.529 -14.305 -13.965 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 11 24 1099 2391 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 12 214 g c - - MP 51 50 6 55 4 11 23 1098 2390 -19.145 -6.306 -0.038 -6.217 -11.869 -10.834 -11.822 2.517 -14.841 -14.306 -1.514 -14.398 -4.106 2.766 -14.392 0.151 0.964 -13.565 -11.915 -11.053 ML 52 50 6 55 4 10 22 1097 2389 -4.684 -4.866 -0.245 -3.596 -0.571 -1.597 1.317 -0.988 MR 53 50 6 55 4 10 21 1096 2388 -13.048 -12.077 -5.953 -0.024 -9.227 1.587 -10.138 -0.009 D 54 50 6 55 4 9 20 1095 2387 -14.753 -14.435 -7.191 -0.010 IL 55 55 5 55 4 10 23 1098 2390 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 11 23 1098 2390 -1.001 -0.999 -12.147 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - U - - - ML 57 56 6 59 3 10 21 1096 2388 -20.036 -0.000 -18.690 -5.638 -6.955 -5.745 1.983 D 58 56 6 59 3 9 20 1095 2387 -17.566 -0.003 -8.871 IL 59 59 3 59 3 9 21 1096 2388 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 60 59 3 62 2 9 20 1095 2387 -20.786 -0.000 1.721 -1.777 -1.335 -6.128 D 61 59 3 62 2 8 19 1094 2386 -8.830 -0.003 IL 62 62 3 62 2 9 20 1095 2387 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 8 19 1094 2386 [ BEGR 45 ] - - - - - - S 64 63 1 65 3 1 2 246 539 -20.130 -0.000 -18.784 IL 65 65 2 65 3 1 3 247 540 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 139 - g - - - ML 66 65 2 68 3 1 2 246 539 -20.130 -0.451 -1.897 0.326 -2.058 0.889 -0.610 D 67 65 2 68 3 0 1 232 525 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 2 250 543 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 140 - G - - - ML 69 68 3 71 3 1 1 250 543 -2.742 -0.272 -5.474 -1.110 -1.997 1.472 -0.966 D 70 68 3 71 3 0 1 147 356 -19.652 -0.000 -13.284 IL 71 71 3 71 3 1 2 279 573 -0.091 -4.094 -8.790 0.000 0.000 0.000 0.000 [ MATL 48 ] 163 - G - - - ML 72 71 3 74 3 1 1 147 315 -20.100 -0.425 -1.970 -1.344 -7.433 1.743 -1.978 D 73 71 3 74 3 0 0 145 313 -15.944 -11.457 -0.001 IL 74 74 3 74 3 1 1 148 316 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 164 - U - - - ML 75 74 3 77 3 1 3 147 315 -19.675 -0.000 -18.329 -0.004 -1.651 -1.743 1.254 D 76 74 3 77 3 0 0 145 313 -19.663 -0.091 -4.037 IL 77 77 3 77 3 1 1 146 315 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 165 - C - - - ML 78 77 3 80 5 1 3 146 314 -19.039 -0.000 -13.869 -19.067 -19.958 -1.525 1.346 -4.567 0.097 D 79 77 3 80 5 0 0 116 262 -13.584 -9.428 -12.845 -9.846 -0.004 IL 80 80 3 80 5 1 1 145 313 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 166 211 G U - - MP 81 80 3 85 6 2 4 145 313 -19.967 -19.906 -0.011 -15.923 -7.001 -15.116 -15.673 -4.811 -15.752 1.589 -5.931 -17.540 0.450 -15.978 -5.707 0.996 -14.284 3.252 -6.532 -16.399 -14.634 -5.562 ML 82 80 3 85 6 1 1 140 308 -7.628 -7.974 -1.698 -0.613 -7.824 -5.353 -0.841 -1.927 1.473 -1.312 MR 83 80 3 85 6 1 1 138 306 -7.298 -6.027 -1.936 -6.006 -0.627 -4.219 -0.009 -0.412 -0.610 0.678 D 84 80 3 85 6 0 0 116 254 -18.091 -16.789 -12.586 -13.268 -13.286 -0.001 IL 85 85 5 85 6 1 1 143 311 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 143 311 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 167 210 C G - - MP 87 86 6 91 6 2 4 143 311 -7.114 -7.041 -0.022 -18.671 -18.951 -19.346 -7.376 -13.974 -7.439 0.887 -4.675 -10.698 3.515 -13.189 -14.129 -0.015 -14.641 -11.542 0.708 -14.454 -4.952 -6.034 ML 88 86 6 91 6 1 1 137 305 -7.595 -7.941 -2.655 -0.318 -7.791 -5.320 0.037 0.656 -1.056 -0.125 MR 89 86 6 91 6 1 2 134 302 -14.386 -13.115 -5.212 -13.093 -0.040 -11.307 1.961 -8.674 -3.319 -8.245 D 90 86 6 91 6 0 0 116 253 -18.093 -16.792 -12.589 -13.271 -13.288 -0.001 IL 91 91 5 91 6 1 2 143 311 -9.619 -0.009 -7.800 -11.537 -12.313 -11.973 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 3 142 310 -9.762 -0.003 -13.274 -11.441 -12.547 0.000 0.000 0.000 0.000 [ MATP 53 ] 169 208 G C - - MP 93 92 6 97 6 2 4 141 309 -19.956 -19.895 -0.000 -18.672 -15.937 -19.346 -13.920 -10.976 -13.739 0.912 -14.869 -10.549 -0.415 -14.429 -13.435 3.595 -13.576 -2.750 -0.407 -1.474 -5.900 -12.704 ML 94 92 6 97 6 1 1 135 303 -7.595 -7.941 -2.655 -0.318 -7.791 -5.320 -0.800 -1.878 1.453 -1.264 MR 95 92 6 97 6 1 1 133 301 -14.349 -13.078 -1.128 -13.057 -8.190 -0.893 -7.039 -6.214 0.854 1.119 D 96 92 6 97 6 0 0 116 252 -18.093 -16.792 -12.589 -13.271 -13.288 -0.001 IL 97 97 5 97 6 1 1 139 307 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 139 307 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 170 207 G C - - MP 99 98 6 103 6 2 4 139 307 -6.416 -19.900 -0.017 -18.677 -18.956 -19.351 -16.127 -6.158 -16.330 2.285 -17.924 -16.639 -3.593 -16.527 -5.048 3.372 -16.110 -7.161 -0.651 -16.330 -15.049 -15.044 ML 100 98 6 103 6 1 1 132 300 -7.595 -7.941 -1.775 -0.580 -7.791 -5.320 1.500 -1.645 -1.349 -1.125 MR 101 98 6 103 6 1 1 136 304 -7.363 -6.092 -1.062 -6.070 -1.204 -4.284 -0.044 0.442 -0.744 0.103 D 102 98 6 103 6 0 0 116 251 -18.410 -17.109 -12.906 -13.588 -13.605 -0.000 IL 103 103 5 103 6 1 3 138 306 -10.318 -10.581 -0.003 -12.236 -13.012 -12.673 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 137 305 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 172 206 G C - - MP 105 104 6 109 4 2 2 137 305 -6.051 -3.597 -0.270 -3.777 -17.817 -4.626 -19.839 -4.890 -19.489 -15.707 -13.819 -19.418 -15.884 3.896 -0.116 -3.940 -4.177 -16.165 -16.255 -18.792 ML 106 104 6 109 4 1 1 128 296 -4.680 -4.862 -0.245 -3.592 -0.566 -1.591 1.314 -0.982 MR 107 104 6 109 4 1 1 135 302 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 116 250 -13.832 -13.514 -11.529 -0.001 IL 109 109 5 109 4 1 1 118 262 -1.001 -11.693 -10.441 -1.002 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 157 325 -0.158 -3.718 -5.169 0.000 0.000 0.000 0.000 [ MATL 56 ] 175 - U - - - ML 111 110 6 113 3 1 3 53 185 -19.932 -0.000 -13.007 -5.701 -15.792 -18.589 1.993 D 112 110 6 113 3 0 0 116 248 -18.588 -14.101 -0.000 IL 113 113 3 113 3 1 1 100 232 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 176 - U - - - ML 114 113 3 116 3 1 3 29 161 -19.932 -0.000 -18.586 -13.476 -4.238 -3.288 1.943 D 115 113 3 116 3 0 0 116 248 -18.590 -9.872 -0.002 IL 116 116 3 116 3 1 1 100 232 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 177 - C - - - ML 117 116 3 119 3 1 3 22 154 -19.932 -0.000 -18.586 -6.207 1.983 -7.655 -5.081 D 118 116 3 119 3 0 0 116 248 -0.804 -2.173 -2.283 IL 119 119 3 119 3 1 3 120 252 -0.202 -2.939 -16.699 0.000 0.000 0.000 0.000 [ MATL 59 ] 189 - G - - - ML 120 119 3 122 3 1 2 8 26 -20.092 -0.000 -18.746 -0.788 -6.359 1.767 -7.798 D 121 119 3 122 3 0 0 9 27 -16.305 -11.818 -0.000 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 190 - A - - - ML 123 122 3 125 3 1 1 6 25 -20.092 -0.000 -18.746 1.968 -7.811 -3.941 -5.811 D 124 122 3 125 3 0 0 8 26 -16.305 -0.001 -10.697 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 191 - u - - - ML 126 125 3 128 3 1 1 5 23 -20.130 -0.001 -10.032 0.195 -1.757 -0.181 0.746 D 127 125 3 128 3 0 0 13 32 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 192 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -4.169 -1.516 -7.355 1.843 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 2 10 1069 2361 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 182 2 10 1069 2361 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 2 1051 2343 -0.024 -7.152 -6.708 -18.169 [ MATP 18 ] 15 115 G C - - MP 136 135 1 140 6 2 4 1052 2344 -6.128 -19.906 -0.023 -18.683 -18.962 -9.388 -14.167 -3.202 -14.003 0.399 -15.157 -14.618 -4.349 -14.665 -14.384 3.715 -14.652 0.315 -3.680 -4.266 -12.234 -5.783 ML 137 135 1 140 6 1 2 1017 2309 -13.722 -14.068 -8.782 -0.004 -13.918 -11.447 1.997 -9.063 -8.303 -8.420 MR 138 135 1 140 6 1 3 978 2269 -14.699 -13.428 -9.337 -13.406 -0.003 -11.620 -0.088 -4.464 1.138 -0.297 D 139 135 1 140 6 0 0 950 2242 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 3 1051 2343 -10.611 -10.874 -0.002 -12.529 -13.305 -12.966 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 2 1045 2337 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 114 C G - - MP 142 141 6 146 6 2 4 1050 2342 -19.965 -19.904 -0.005 -18.680 -8.256 -19.355 -14.533 -14.251 -14.502 -4.067 -11.129 -10.784 3.216 -14.005 -14.372 -0.982 -4.838 -11.833 2.354 -2.347 -0.373 -5.318 ML 143 141 6 146 6 1 1 1016 2308 -13.722 -14.068 -8.782 -0.695 -13.918 -1.397 1.997 -9.063 -8.303 -8.420 MR 144 141 6 146 6 1 2 976 2268 -14.699 -13.428 -9.337 -1.938 -0.440 -11.620 -4.637 -6.137 -0.519 1.699 D 145 141 6 146 6 0 0 903 2195 -14.630 -13.329 -9.126 -9.808 -0.029 -5.901 IL 146 146 5 146 6 1 1 1044 2335 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 1042 2334 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 113 U A - - MP 148 147 6 152 6 2 4 1048 2340 -8.008 -19.899 -0.006 -18.676 -18.955 -19.350 -8.773 -4.339 -9.955 0.147 -6.221 -15.974 -4.497 -14.833 -0.602 -0.279 -5.468 -13.044 3.682 -3.421 -1.519 -14.085 ML 149 147 6 152 6 1 2 1048 2340 -0.155 -14.032 -3.339 -8.440 -13.881 -11.411 0.120 1.325 -1.353 -5.905 MR 150 147 6 152 6 1 2 903 2194 -14.993 -13.722 -2.991 -13.700 -0.195 -11.914 1.627 -1.007 -6.930 -1.304 D 151 147 6 152 6 0 0 663 1955 -15.488 -14.186 -9.983 -10.665 -10.683 -0.003 IL 152 152 5 152 6 1 3 1047 2339 -10.120 -10.383 -0.003 -12.038 -12.814 -12.475 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 1039 2330 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 112 C G - - MP 154 153 6 158 4 2 4 1046 2338 -19.202 -1.936 -0.437 -17.823 -3.949 -14.021 -5.700 -5.035 0.135 -15.147 3.378 -9.447 -2.955 -4.302 -14.682 -6.295 0.334 -14.497 1.057 -0.228 ML 155 153 6 158 4 1 1 968 2259 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 4 1 1 573 1865 -12.826 -11.855 -3.167 -0.171 -0.473 -6.433 1.490 -1.122 D 157 153 6 158 4 0 0 638 1930 -10.911 -10.592 -8.608 -0.005 IL 158 158 5 158 4 1 1 1051 2343 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 4 1138 2430 -0.021 -6.142 -21.711 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - A - - - ML 160 159 6 162 3 1 3 14 30 -20.113 -0.000 -18.767 1.955 -3.230 -14.987 -5.833 D 161 159 6 162 3 0 0 13 32 -15.148 -10.661 -0.001 IL 162 162 3 162 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - - - ML 163 162 3 165 3 1 3 13 29 -20.113 -0.000 -18.767 0.598 -6.573 1.280 -4.379 D 164 162 3 165 3 0 0 12 30 -15.148 -10.661 -0.001 IL 165 165 3 165 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - U - - - ML 166 165 3 168 3 1 2 12 28 -1.163 -0.853 -15.528 -2.143 -0.835 -3.425 1.641 D 167 165 3 168 3 0 0 9 27 -15.148 -0.500 -1.772 IL 168 168 3 168 3 1 1 11 27 -4.602 -0.101 -5.225 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 169 168 3 171 3 1 2 9 26 -20.107 -0.000 -18.761 -3.312 -16.365 1.954 -5.383 D 170 168 3 171 3 0 0 9 28 -15.564 -9.246 -0.002 IL 171 171 3 171 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 172 171 3 174 3 1 1 8 24 -20.107 -0.000 -18.761 -5.633 -7.321 1.974 -4.475 D 173 171 3 174 3 0 0 8 26 -15.562 -0.001 -9.954 IL 174 174 3 174 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 175 174 3 177 3 1 1 7 13 -2.635 -0.253 -18.784 -5.545 -0.311 -5.450 1.655 D 176 174 3 177 3 0 0 5 12 -6.174 -1.687 -0.566 IL 177 177 3 177 3 1 1 7 13 -4.293 -0.076 -14.964 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - A - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 1.967 -5.799 -4.567 -5.084 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 182 134 1 183 3 0 1 23 41 -20.130 -0.006 -7.983 IL 183 183 2 183 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 116 - a - - - ML 184 183 2 186 5 1 1 23 41 -5.503 -0.033 -18.873 -19.085 -11.720 0.944 -1.336 0.422 -1.555 D 185 183 2 186 5 0 0 22 40 -11.536 -0.006 -10.797 -9.172 -9.085 IL 186 186 3 186 5 1 1 23 41 -10.362 -0.002 -12.041 -13.874 -13.147 0.000 0.000 0.000 0.000 [ MATP 32 ] 118 138 c g - - MP 187 186 3 191 6 2 4 22 40 -19.990 -19.930 -0.000 -18.706 -18.986 -19.381 -4.156 -8.632 -13.743 0.600 -1.836 -14.590 2.895 -7.116 -3.085 -0.146 -14.206 0.187 2.019 -2.081 -2.160 -5.410 ML 188 186 3 191 6 1 1 25 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 3 191 6 1 1 25 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 3 191 6 0 0 22 36 -12.429 -11.127 -6.924 -0.138 -7.624 -3.699 IL 191 191 5 191 6 1 1 27 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 26 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 119 137 c g - - MP 193 192 6 197 6 2 3 20 38 -19.990 -19.930 -0.000 -18.706 -18.986 -19.381 -14.283 -8.533 -14.281 0.383 -8.357 -15.122 2.855 -4.565 -14.145 2.021 -14.656 -1.060 1.063 -6.870 -0.391 -6.263 ML 194 192 6 197 6 1 1 22 35 -9.319 -9.665 -4.379 -0.089 -9.515 -7.044 -3.244 -4.655 1.923 -3.986 MR 195 192 6 197 6 1 1 23 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 21 34 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 25 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 24 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 120 136 A U - - MP 199 198 6 203 6 2 3 18 36 -19.990 -19.930 -0.034 -5.426 -18.986 -19.381 -13.962 -12.601 -10.182 3.336 -14.910 -8.584 -1.874 -4.350 -14.218 1.584 -5.952 -0.499 0.892 -11.292 -11.985 -12.746 ML 200 198 6 203 6 1 1 20 34 -9.319 -9.665 -4.379 -4.074 -9.515 -0.171 1.920 -4.083 -3.571 -3.786 MR 201 198 6 203 6 1 1 21 35 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 19 33 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 23 36 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 22 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 121 135 g c - - MP 205 204 6 209 6 2 2 16 34 -5.205 -19.896 -0.040 -18.672 -18.952 -19.347 -13.974 -9.230 -13.817 -0.299 -11.210 -14.442 2.484 -7.597 -14.166 2.831 -14.457 0.829 -0.581 -13.710 -7.031 -6.227 ML 206 204 6 209 6 1 1 16 33 -15.442 -15.788 -6.496 -10.197 -0.018 -13.167 -10.946 1.999 -11.644 -9.559 MR 207 204 6 209 6 1 1 19 34 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 17 33 -12.429 -11.127 -0.133 -7.606 -7.624 -3.699 IL 209 209 5 209 6 1 1 16 34 -11.521 -0.003 -9.702 -13.439 -14.216 -13.876 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 15 33 -10.632 -0.001 -14.143 -12.311 -13.416 0.000 0.000 0.000 0.000 [ MATP 36 ] 123 133 C G - - MP 211 210 6 215 4 2 2 14 32 -19.187 -6.783 -0.013 -17.808 -15.055 -14.813 -14.949 -3.631 -13.706 -15.635 3.716 -3.347 -14.850 0.527 -15.291 -6.649 -0.366 -15.192 -1.175 -6.974 ML 212 210 6 215 4 1 1 21 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 4 1 1 15 32 -13.988 -13.017 -10.884 -0.001 -10.927 1.999 -11.623 -9.542 D 214 210 6 215 4 0 0 19 35 -4.568 -4.250 -2.265 -0.520 IL 215 215 5 215 4 1 1 22 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 216 216 6 216 3 1 1 12 31 -8.022 -0.006 -10.722 0.000 0.000 0.000 0.000 [ MATL 37 ] 124 - U - - - ML 217 216 6 219 3 1 1 11 30 -20.097 -0.000 -18.751 -7.219 0.549 -5.855 1.330 D 218 216 6 219 3 0 0 12 30 -16.109 -11.622 -0.000 IL 219 219 3 219 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 125 - U - - - ML 220 219 3 222 3 1 1 10 29 -20.097 -0.000 -18.751 -2.943 -5.851 -5.813 1.939 D 221 219 3 222 3 0 0 11 29 -16.109 -11.622 -0.000 IL 222 222 3 222 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 126 - u - - - ML 223 222 3 225 3 1 1 9 27 -20.097 -0.000 -18.751 -0.156 0.037 -0.074 0.172 D 224 222 3 225 3 0 0 9 28 -16.109 -11.622 -0.000 IL 225 225 3 225 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 127 - c - - - ML 226 225 3 228 3 1 1 7 26 -3.513 -0.233 -4.017 -0.019 0.052 -0.065 0.029 D 227 225 3 228 3 0 0 6 25 -16.109 -11.622 -0.000 IL 228 228 3 228 3 1 1 7 26 -11.278 -0.001 -13.978 0.000 0.000 0.000 0.000 [ MATL 41 ] 129 - a - - - ML 229 228 3 231 3 1 1 6 25 -20.005 -0.000 -18.659 0.131 0.126 -0.300 0.003 D 230 228 3 231 3 0 0 6 25 -17.964 -13.477 -0.000 IL 231 231 3 231 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 130 - A - - - ML 232 231 3 234 3 1 1 5 23 -20.005 -0.099 -3.921 1.857 -4.209 -1.671 -6.872 D 233 231 3 234 3 0 0 5 24 -17.964 -13.477 -0.000 IL 234 234 3 234 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 131 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.920 -5.386 -2.816 -4.328 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Gly ACC bact-Gly-r2-022416 LENG 75 MAXL 1087 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 15:14:13 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Gly-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Gly-r2-022416.sto NSEQ 17424 EFFN 14.111835 CKSUM 32522922 STATS LOCAL MSV -7.9036 0.71884 STATS LOCAL VITERBI -9.4098 0.71884 STATS LOCAL FORWARD -3.1212 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50750 1.37631 1.26692 1.40923 1.38629 1.38629 1.38629 1.38629 0.19167 2.37773 2.50517 0.36933 1.17505 0.00000 * 1 3.54836 3.64166 0.06678 4.64396 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01404 4.96957 4.96217 1.46634 0.26236 1.83946 0.17305 2 2.95939 0.33167 2.14187 2.18046 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01688 4.97095 4.62508 1.46634 0.26236 0.38362 1.14379 3 2.06628 2.37353 0.32797 2.81660 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03666 3.53371 4.99073 0.85849 0.55130 1.06385 0.42331 4 1.88550 2.80144 0.37088 2.32898 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01584 4.99200 4.71960 1.46634 0.26236 1.17560 0.36908 5 1.20905 2.07223 0.69746 2.55404 8 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02207 4.99030 4.19800 1.46634 0.26236 1.26785 0.33050 6 1.05277 1.50950 2.20877 1.13889 9 a - - ( 1.38629 1.38629 1.38629 1.38629 0.05677 3.82894 3.39762 0.79984 0.59675 1.55904 0.23615 7 1.23688 2.74552 0.65499 2.07107 12 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.95513 3.99516 1.46634 0.26236 2.13955 0.12523 8 3.49144 3.46080 3.93031 0.08501 13 U - - , 1.38629 1.38629 1.38629 1.38629 0.01435 4.94411 4.94411 1.46634 0.26236 0.21933 1.62485 9 0.25050 2.52755 2.25965 3.28742 14 A - - , 1.38629 1.38629 1.38629 1.38629 0.02176 4.99934 4.21412 1.46634 0.26236 1.10362 0.40297 10 1.92654 3.02502 0.29319 2.81494 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02730 3.96984 4.82129 0.61049 0.78325 1.43698 0.27134 11 2.73824 0.73577 2.30396 1.03194 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.01886 4.99000 4.43351 1.46634 0.26236 1.20493 0.35627 12 2.07353 1.94396 1.89098 0.54438 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.02252 4.17063 4.98709 0.72940 0.65816 1.40302 0.28217 13 2.47399 0.63880 2.29533 1.24793 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01373 4.98835 4.98835 1.46634 0.26236 1.39982 0.28321 14 0.06604 3.50107 4.22795 3.95518 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01371 4.98933 4.98933 1.46634 0.26236 1.50239 0.25180 15 1.01071 3.70485 0.55802 3.24180 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01371 4.98933 4.98933 1.46634 0.26236 1.50239 0.25180 16 2.49624 1.95839 3.16314 0.30894 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.49963 0.95083 4.98697 0.04912 3.03792 0.78135 0.61210 17 3.44015 5.07558 0.05319 4.30585 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02432 4.99648 4.05884 1.46634 0.26236 1.23259 0.34466 18 4.02969 5.00028 0.04157 4.12271 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01376 4.98594 4.98594 1.46634 0.26236 0.51219 0.91425 19 3.29040 1.71006 3.74951 0.27657 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.16320 1.93908 4.99945 0.13762 2.05127 1.09861 0.40547 20 0.05653 4.18021 3.84028 4.00764 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.26858 1.48495 4.70761 4.24055 0.01450 1.09861 0.40547 21 1.59463 2.51556 0.53196 2.04992 112 G - - > 1.38629 1.38629 1.38629 1.38629 0.01956 4.99715 4.37331 1.46634 0.26236 1.20564 0.35596 22 0.58367 2.14104 1.70606 1.94464 113 A - - > 1.38629 1.38629 1.38629 1.38629 0.01496 4.99128 4.82131 1.46634 0.26236 1.16113 0.37562 23 1.22626 2.37760 0.63162 2.49967 114 G - - > 1.38629 1.38629 1.38629 1.38629 0.01367 4.99218 4.99218 1.46634 0.26236 1.23453 0.34386 24 3.07790 0.38518 2.81619 1.54280 115 C - - > 1.38629 1.38629 1.38629 1.38629 0.01709 4.99344 4.58860 1.46634 0.26236 0.72231 0.66481 25 0.85067 2.08130 1.22263 1.87310 116 a - - , 1.38629 1.38629 1.38629 1.38629 0.03309 3.66792 4.95956 0.46547 0.98844 0.84766 0.55935 26 1.87226 0.99180 1.72538 1.21332 118 c - - < 1.38629 1.38629 1.38629 1.38629 0.01358 4.99919 4.99919 1.46634 0.26236 1.07442 0.41779 27 2.16521 0.92816 1.37159 1.44269 119 c - - < 1.38629 1.38629 1.38629 1.38629 0.01358 4.99944 4.99944 1.46634 0.26236 1.09861 0.40547 28 0.81469 2.61929 1.04764 2.01287 120 a - - < 1.38629 1.38629 1.38629 1.38629 0.01383 4.99944 4.96293 1.46634 0.26236 1.09861 0.40547 29 2.14241 1.30992 0.67651 2.25955 121 G - - < 1.38629 1.38629 1.38629 1.38629 0.05726 3.52996 3.63636 0.41003 1.08955 1.07442 0.41779 30 2.98973 0.40283 2.10848 1.83353 123 C - - < 1.38629 1.38629 1.38629 1.38629 0.01385 4.97965 4.97965 1.46634 0.26236 1.77618 0.18547 31 3.16331 1.10177 3.68526 0.51026 124 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01385 4.97965 4.97965 1.46634 0.26236 1.77618 0.18547 32 2.99491 3.37619 3.89229 0.11050 125 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01385 4.97965 4.97965 1.46634 0.26236 1.77618 0.18547 33 1.36862 1.45221 1.52422 1.22521 126 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01385 4.97965 4.97965 1.46634 0.26236 1.77618 0.18547 34 1.31503 1.44746 1.51859 1.28248 127 u - - _ 1.38629 1.38629 1.38629 1.38629 0.15140 2.51078 2.82535 0.16152 1.90279 1.77618 0.18547 35 1.25392 1.41407 1.63064 1.28859 129 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01462 4.92582 4.92582 1.46634 0.26236 2.60484 0.07679 36 0.15459 3.49162 2.43920 3.66718 130 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07255 4.92582 2.76897 1.46634 0.26236 1.85292 0.17053 37 0.11147 3.67662 3.02089 3.46037 131 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01535 4.87733 4.87733 1.46634 0.26236 0.10507 2.30518 38 2.13467 2.17841 0.35561 2.69189 133 G - - > 1.38629 1.38629 1.38629 1.38629 0.05773 3.53021 3.61942 0.41003 1.08955 1.09861 0.40547 39 2.47689 0.84420 1.26755 1.58682 135 c - - > 1.38629 1.38629 1.38629 1.38629 0.01385 4.97918 4.97918 1.46634 0.26236 0.41696 1.07601 40 2.13748 1.20014 2.47419 0.69984 136 u - - > 1.38629 1.38629 1.38629 1.38629 0.01358 4.99919 4.99919 1.46634 0.26236 1.11093 0.39936 41 1.70661 1.50332 0.81019 1.88811 137 g - - > 1.38629 1.38629 1.38629 1.38629 0.01358 4.99919 4.99919 1.46634 0.26236 1.11093 0.39936 42 1.33121 2.04089 0.91880 1.57535 138 g - - > 1.38629 1.38629 1.38629 1.38629 0.01358 4.99919 4.99919 1.46634 0.26236 1.07442 0.41779 43 1.19508 2.31251 0.92210 1.60632 139 g - - , 1.38629 1.38629 1.38629 1.38629 0.27728 4.99944 1.44639 1.46634 0.26236 1.09861 0.40547 44 1.85599 2.45288 0.49337 1.91672 140 G - - , 1.38629 1.38629 1.38629 1.38629 0.17010 2.04401 3.61513 2.76677 0.06493 0.05573 2.91490 45 2.14601 3.62051 0.24844 2.57360 163 G - - , 1.38629 1.38629 1.38629 1.38629 0.26546 4.98532 1.48584 1.46634 0.26236 1.62542 0.21919 46 1.34365 2.05928 2.15740 0.70131 164 u - - , 1.38629 1.38629 1.38629 1.38629 0.01768 4.73754 4.73754 1.46634 0.26236 0.11626 2.20951 47 2.16596 0.56014 3.32508 1.27919 165 C - - , 1.38629 1.38629 1.38629 1.38629 0.01377 4.98531 4.98531 1.46634 0.26236 1.62542 0.21919 48 1.60157 2.29029 0.43752 2.96532 166 G - - < 1.38629 1.38629 1.38629 1.38629 0.02054 4.98531 4.30565 1.46634 0.26236 1.62542 0.21919 49 2.05984 0.57129 2.16589 1.64465 167 C - - < 1.38629 1.38629 1.38629 1.38629 0.02009 4.34215 4.97864 0.85119 0.55671 1.77649 0.18540 50 1.82655 2.59771 0.40138 2.35187 169 G - - < 1.38629 1.38629 1.38629 1.38629 0.01387 4.97881 4.97709 1.46634 0.26236 1.43608 0.27162 51 1.32920 3.07047 0.48546 2.61045 170 G - - < 1.38629 1.38629 1.38629 1.38629 0.02395 4.08605 4.98178 0.68109 0.70535 1.72049 0.19721 52 3.68819 4.82588 0.04488 4.52356 172 G - - < 1.38629 1.38629 1.38629 1.38629 0.11347 3.92895 2.43487 0.59393 0.80330 1.72190 0.19690 53 3.86213 3.89378 4.57983 0.05303 175 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02938 4.89760 3.84019 1.46634 0.26236 2.85434 0.05932 54 3.49137 3.17265 3.35347 0.11352 176 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01526 4.88348 4.88348 1.46634 0.26236 0.62383 0.76763 55 4.25332 0.04830 4.63947 3.76066 177 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06901 2.81989 4.95160 2.08575 0.13263 0.76993 0.62184 56 1.95593 3.98978 0.20258 3.75311 189 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01389 4.97672 4.97672 1.46634 0.26236 1.84564 0.17188 57 0.04949 4.52129 3.74612 4.28296 190 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01389 4.97672 4.97672 1.46634 0.26236 0.37958 1.15249 58 1.22602 2.12848 1.56809 0.97001 191 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01440 4.99944 4.88578 1.46634 0.26236 1.09861 0.40547 59 3.25060 2.38476 3.96937 0.16222 192 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10541 2.58039 3.71737 2.23523 0.11313 1.02429 0.44480 60 4.57317 0.09568 3.06547 3.37287 206 C - - > 1.38629 1.38629 1.38629 1.38629 0.01383 4.98175 4.98004 1.46634 0.26236 1.72298 0.19666 61 2.76200 0.52987 2.88482 1.23002 207 C - - > 1.38629 1.38629 1.38629 1.38629 0.01382 4.98174 4.98174 1.46634 0.26236 1.30940 0.31469 62 2.66235 0.43463 2.45128 1.62694 208 C - - > 1.38629 1.38629 1.38629 1.38629 0.02651 3.94623 4.98525 0.60117 0.79445 1.62732 0.21872 63 1.78094 2.28372 0.53537 1.93683 210 G - - > 1.38629 1.38629 1.38629 1.38629 0.01378 4.98525 4.98325 1.46634 0.26236 1.62231 0.21995 64 3.17671 1.43942 2.20671 0.49241 211 U - - > 1.38629 1.38629 1.38629 1.38629 0.05482 4.05812 3.32248 0.97898 0.47112 0.49946 0.93358 65 2.17085 0.79093 2.58954 1.02878 214 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02859 4.96568 3.85318 1.46634 0.26236 0.38274 1.14568 66 1.42222 2.33501 1.21258 1.00900 215 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01945 4.39149 4.97886 0.88761 0.53041 1.67662 0.20703 67 2.76514 0.77914 1.96130 1.08602 217 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01559 4.97886 4.75720 1.46634 0.26236 1.41575 0.27805 68 3.01388 0.40701 2.25749 1.71120 218 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03709 4.97920 3.52219 1.46634 0.26236 0.47632 0.97039 69 3.09187 0.35874 2.27569 1.87537 219 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01396 4.97166 4.97166 1.46634 0.26236 1.84064 0.17283 70 2.43259 2.27334 0.28526 2.85757 220 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01396 4.97166 4.97166 1.46634 0.26236 1.83324 0.17423 71 4.66509 0.08164 3.59185 3.18383 221 C - - ) 1.38629 1.38629 1.38629 1.38629 0.09720 2.45697 4.97172 0.20544 1.68355 1.83946 0.17305 72 2.58260 3.10072 3.89652 0.15188 224 U - - : 1.38629 1.38629 1.38629 1.38629 0.13465 4.72054 2.14500 1.46634 0.26236 1.83946 0.17305 73 4.61127 0.03609 5.01195 3.97103 225 C - - : 1.38629 1.38629 1.38629 1.38629 0.02018 4.60607 4.60607 1.46634 0.26236 2.91406 0.05578 74 4.61127 0.03609 5.01195 3.97103 226 C - - : 1.38629 1.38629 1.38629 1.38629 0.02018 4.60607 4.60607 1.46634 0.26236 1.32961 0.30731 75 0.02819 4.88857 4.50494 4.68701 227 A - - : 1.38629 1.38629 1.38629 1.38629 0.02531 3.68931 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-His ACC bact-His-r2-022416 STATES 236 NODES 63 CLEN 74 W 1102 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 16:09:14 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-His-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-His-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-His-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-His-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4731 EFFN 4731.000000 CKSUM 3642553722 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.0718 0.71884 ECMLC 0.69042 -7.32497 1.65725 1600000 592165 0.002026 ECMGC 0.26658 -46.78006 -31.94566 1600000 20869 0.019167 ECMLI 0.67116 -7.04989 2.07280 1600000 547357 0.002192 ECMGI 0.27406 -44.59920 -30.12310 1600000 21138 0.018923 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1102 2382 -17.134 -18.380 -0.011 -7.034 IL 1 1 2 1 4 29 52 1106 2385 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 29 53 1106 2385 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 179 - C - - MR 3 2 3 5 5 29 53 1105 2384 -5.976 -0.052 -16.987 -5.663 -18.091 -0.466 1.542 -2.383 -2.531 D 4 2 3 5 5 25 49 1102 2381 -10.757 -6.112 -0.030 -9.814 -7.809 IR 5 5 3 5 5 30 54 1106 2385 -1.109 -0.901 -12.432 -10.599 -11.705 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 176 G C - - MP 6 5 3 10 6 34 54 1104 2383 -18.072 -18.011 -0.000 -16.788 -17.067 -17.463 -14.153 -12.280 -14.191 -2.463 -14.611 -13.791 -0.293 -14.487 -13.631 3.759 -13.897 -0.727 -2.343 -13.652 -0.600 -13.089 ML 7 5 3 10 6 27 51 1102 2381 -11.972 -12.318 -7.033 -0.014 -12.168 -9.698 1.991 -7.403 -6.711 -6.866 MR 8 5 3 10 6 25 46 1101 2380 -13.858 -12.587 -2.547 -12.566 -0.273 -10.779 -7.329 1.660 -8.183 -0.267 D 9 5 3 10 6 22 42 1097 2376 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 25 47 1103 2382 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 25 47 1103 2382 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 175 U A - - MP 12 11 6 16 6 32 52 1102 2381 -18.077 -18.016 -0.000 -16.793 -17.072 -17.467 -12.607 -12.323 -12.581 -0.598 0.699 -13.383 1.930 -7.354 -10.487 0.638 -8.662 -9.902 3.058 -12.778 -6.481 -11.172 ML 13 11 6 16 6 27 50 1101 2380 -11.972 -12.318 -0.016 -6.727 -12.168 -9.698 1.991 -7.403 -6.711 -6.866 MR 14 11 6 16 6 24 44 1099 2379 -13.592 -12.321 -8.230 -12.299 -0.027 -6.116 1.577 -5.953 -6.415 -0.016 D 15 11 6 16 6 22 41 1096 2375 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 25 46 1101 2380 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 25 47 1101 2380 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 174 G C - - MP 18 17 6 22 6 30 50 1100 2379 -18.088 -18.027 -0.000 -16.804 -17.084 -17.479 -15.640 -12.653 -16.893 -1.314 -17.312 -13.942 -0.689 -16.734 -13.995 3.872 -14.231 -3.670 -1.980 -14.349 -14.207 -15.667 ML 19 17 6 22 6 24 44 1098 2377 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 24 44 1098 2378 -13.572 -12.301 -0.416 -12.280 -6.762 -2.054 -0.105 1.610 -7.640 -6.306 D 21 17 6 22 6 22 41 1095 2374 -10.614 -9.312 -5.109 -5.791 -5.809 -0.100 IL 22 22 5 22 6 24 45 1099 2378 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 24 46 1099 2378 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 173 G C - - MP 24 23 6 28 6 28 48 1098 2377 -18.106 -18.045 -0.000 -16.821 -17.101 -17.496 -12.072 -6.093 -11.891 1.069 -13.022 -12.487 -0.053 -12.581 -12.329 3.271 -12.575 1.107 -0.915 -11.745 -7.986 -0.788 ML 25 23 6 28 6 23 42 1096 2375 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 23 43 1096 2376 -7.390 -6.119 -1.033 -6.097 -1.231 -4.311 -0.067 0.477 -0.768 0.093 D 27 23 6 28 6 22 41 1095 2374 -14.248 -12.946 -8.743 -9.425 -0.119 -3.734 IL 28 28 5 28 6 23 43 1097 2376 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 23 43 1097 2376 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 172 c g - - MP 30 29 6 34 6 26 46 1096 2375 -18.106 -18.045 -0.000 -16.821 -17.101 -17.496 -12.399 -8.114 -12.397 0.370 -8.178 -13.238 2.535 -11.926 -12.261 1.301 -12.772 1.798 0.498 -12.575 -0.297 -0.441 ML 31 29 6 34 6 22 42 1094 2373 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 24 44 1095 2374 -11.575 -10.304 -0.041 -10.282 -5.416 -8.496 1.983 -6.357 -5.740 -5.947 D 33 29 6 34 6 19 39 1089 2369 -10.614 -9.312 -5.109 -5.791 -5.809 -0.100 IL 34 34 5 34 6 23 43 1095 2374 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 23 43 1095 2374 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 171 U A - - MP 36 35 6 40 6 24 44 1094 2373 -3.818 -18.051 -0.106 -16.827 -17.107 -17.502 -12.695 -12.414 -12.662 -0.570 -11.492 -13.454 1.290 -7.853 -12.534 -0.605 -13.025 -9.997 3.541 -3.713 -2.145 -1.858 ML 37 35 6 40 6 22 42 1092 2372 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 22 41 1092 2371 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 19 39 1089 2368 -10.614 -9.312 -5.109 -5.791 -5.809 -0.100 IL 40 40 5 40 6 23 42 1094 2373 -1.487 -2.444 -1.247 -13.618 -14.394 -4.712 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 23 43 1093 2372 -8.385 -0.007 -11.896 -10.064 -11.170 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 169 G C - - MP 42 41 6 46 4 22 42 1092 2371 -17.334 -17.541 -0.000 -15.955 -13.957 -12.024 -14.021 0.956 -15.096 -13.574 -3.804 -14.572 -13.487 3.674 -13.741 -2.344 -0.006 -5.202 -12.139 -12.950 ML 43 41 6 46 4 21 40 1091 2370 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 21 40 1090 2370 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 19 39 1089 2368 -9.778 -9.459 -4.182 -0.086 IL 46 46 5 46 4 22 41 1092 2371 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 21 41 1091 2371 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - - - ML 48 47 6 50 3 20 40 1090 2369 -18.244 -0.000 -16.898 -3.716 -4.356 -4.676 1.940 D 49 47 6 50 3 19 39 1089 2368 -11.806 -0.020 -6.198 IL 50 50 3 50 3 20 40 1090 2370 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 51 50 3 53 2 19 39 1089 2368 -18.906 -0.000 1.497 -4.682 0.119 -4.261 D 52 50 3 53 2 18 38 1088 2367 -8.445 -0.004 IL 53 53 3 53 2 19 39 1089 2369 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 18 38 1088 2367 [ BEGR 44 ] - - - - - - S 55 54 1 56 3 1 6 150 323 -18.250 -0.000 -16.904 IL 56 56 2 56 3 1 7 155 327 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 124 - u - - - ML 57 56 2 59 3 1 6 150 323 -18.250 -0.167 -3.195 0.303 -0.625 -1.265 0.767 D 58 56 2 59 3 0 5 165 337 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 6 149 322 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 125 - u - - - ML 60 59 3 62 3 1 5 132 304 -6.222 -0.027 -7.603 -0.276 -2.214 0.543 0.586 D 61 59 3 62 3 0 5 169 341 -0.388 -2.088 -10.866 IL 62 62 3 62 3 1 6 171 343 -0.154 -3.413 -7.064 0.000 0.000 0.000 0.000 [ MATL 47 ] 144 - G - - - ML 63 62 3 65 3 1 4 49 94 -18.233 -0.141 -3.427 -3.474 -2.569 1.623 -0.596 D 64 62 3 65 3 0 3 48 93 -13.251 -0.499 -1.776 IL 65 65 3 65 3 1 5 50 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 145 - U - - - ML 66 65 3 68 3 1 4 48 94 -18.105 -0.006 -7.859 -2.036 -3.196 -1.287 1.695 D 67 65 3 68 3 0 3 47 93 -16.277 -0.001 -10.669 IL 68 68 3 68 3 1 2 49 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 146 - C - - - ML 69 68 3 71 5 1 4 47 93 -17.177 -0.002 -16.992 -9.483 -18.096 -2.902 1.685 -4.290 -0.737 D 70 68 3 71 5 0 0 42 87 -9.674 -5.518 -8.935 -0.047 -7.223 IL 71 71 3 71 5 1 1 47 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 147 168 G U - - MP 72 71 3 76 6 2 5 46 92 -18.104 -18.043 -0.000 -16.820 -17.100 -17.495 -14.152 -6.713 -14.346 -0.730 -16.466 -17.620 -0.868 -14.388 -13.907 1.001 -5.665 3.671 -3.695 -15.647 -13.759 -12.945 ML 73 71 3 76 6 1 1 45 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 41 87 -11.999 -10.728 -6.637 -1.970 -0.450 -8.920 -0.078 -3.839 -4.552 1.556 D 75 71 3 76 6 0 0 40 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 45 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 45 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 148 167 u a - - MP 78 77 6 82 6 2 5 44 90 -7.023 -18.043 -0.011 -16.820 -17.100 -17.495 -12.400 -4.365 -4.181 1.229 -5.148 -13.244 2.420 -11.919 -12.258 -0.347 -12.772 -6.302 2.861 -5.659 -4.148 -5.027 ML 79 77 6 82 6 1 1 43 88 -9.635 -9.982 -0.085 -4.390 -9.831 -7.361 1.942 -4.536 -4.002 -4.254 MR 80 77 6 82 6 1 1 37 82 -11.575 -10.304 -6.213 -10.282 -0.026 -8.496 1.983 -6.357 -5.740 -5.947 D 81 77 6 82 6 0 0 39 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 43 89 -7.884 -8.147 -0.015 -9.802 -10.579 -10.239 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 43 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 150 166 G C - - MP 84 83 6 88 6 2 5 42 88 -18.106 -18.045 -0.000 -16.822 -17.102 -17.497 -13.137 -3.168 -13.051 -0.114 -14.169 -13.195 -0.045 -13.683 -13.058 3.724 -7.715 -0.540 -3.458 -12.715 -11.232 -11.999 ML 85 83 6 88 6 1 1 39 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 35 80 -11.575 -10.304 -6.213 -0.060 -5.416 -8.496 -5.715 1.975 -6.178 -4.823 D 87 83 6 88 6 0 0 37 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 41 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 41 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 151 165 G C - - MP 90 89 6 94 6 2 5 40 86 -18.106 -18.045 -0.000 -16.822 -17.102 -17.497 -15.873 -12.671 -17.600 -1.628 -17.523 -13.887 -1.836 -17.272 -14.027 3.939 -14.238 -8.657 -4.155 -14.333 -14.345 -16.460 ML 91 89 6 94 6 1 1 33 78 -11.032 -11.378 -6.093 -0.027 -11.228 -8.758 -5.528 -5.039 -6.373 1.977 MR 92 89 6 94 6 1 1 39 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 37 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 40 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 39 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 152 164 G C - - MP 96 95 6 100 4 2 4 38 84 -4.704 -17.542 -0.056 -15.956 -16.029 -12.663 -18.317 -2.771 -17.666 -13.828 -11.965 -17.789 -14.031 3.982 -4.252 -10.594 -12.328 -14.295 -14.414 -17.388 ML 97 95 6 100 4 1 1 31 77 -8.133 -8.316 -0.021 -7.045 -5.528 -5.039 -6.373 1.977 MR 98 95 6 100 4 1 1 37 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 36 82 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 2 44 90 -0.586 -1.586 -10.516 -14.254 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 14 32 -8.246 -7.602 -0.012 0.000 0.000 0.000 0.000 [ MATL 55 ] 156 - U - - - ML 102 101 6 104 3 1 4 13 31 -18.193 -0.000 -16.848 -5.383 -13.923 -16.368 1.991 D 103 101 6 104 3 0 0 13 31 -14.962 -10.475 -0.001 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 157 - U - - - ML 105 104 3 107 3 1 3 12 30 -18.193 -0.000 -16.848 -15.093 -13.933 -5.345 1.991 D 106 104 3 107 3 0 0 12 30 -14.962 -10.475 -0.001 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 158 - C - - - ML 108 107 3 110 3 1 2 10 29 -18.193 -0.000 -16.848 -15.173 2.000 -16.350 -13.290 D 109 107 3 110 3 0 0 11 29 -14.962 -10.475 -0.001 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 159 - G - - - ML 111 110 3 113 3 1 1 9 27 -18.193 -0.000 -16.848 -0.150 -13.982 1.631 -13.336 D 112 110 3 113 3 0 0 10 28 -14.962 -0.002 -9.353 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 160 - A - - - ML 114 113 3 116 3 1 1 8 26 -18.250 -0.000 -16.904 1.966 -7.013 -3.862 -6.009 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 161 - G - - - ML 117 116 3 119 3 1 1 6 24 -18.250 -0.000 -16.904 -0.351 -4.134 1.257 -0.379 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 162 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -2.978 -0.489 -2.654 1.586 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 4 16 1065 2344 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 179 4 16 1065 2344 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 26 41 -0.004 -16.241 -8.384 -16.289 [ MATP 15 ] 12 32 G C - - MP 127 126 1 131 6 2 6 26 41 -18.107 -18.047 -0.018 -16.823 -6.373 -17.498 -5.321 -12.620 -15.031 -0.935 -16.520 -14.501 -2.381 -15.159 -13.897 3.803 -14.285 0.322 -4.220 -14.518 -13.602 -13.730 ML 128 126 1 131 6 1 2 25 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 4 25 40 -11.207 -9.936 -0.053 -9.914 -5.048 -8.128 1.977 -5.900 -5.311 -5.543 D 130 126 1 131 6 0 1 23 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 2 26 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 2 26 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 31 C G - - MP 133 132 6 137 6 2 6 24 39 -18.094 -18.033 -0.000 -16.810 -17.090 -17.485 -15.152 -15.434 -14.469 -11.671 -12.820 -14.613 3.579 -0.647 -3.246 -11.642 -14.693 -13.838 1.422 -14.986 -0.672 -13.375 ML 134 132 6 137 6 1 2 24 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 4 22 38 -13.164 -11.893 -7.801 -11.871 -0.009 -10.084 -8.115 -7.277 -9.157 1.996 D 136 132 6 137 6 0 1 22 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 2 25 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 2 24 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 30 U A - - MP 139 138 6 143 6 2 6 22 37 -18.094 -18.033 -0.000 -16.810 -17.090 -17.485 -15.090 -5.165 -14.445 -5.229 -12.829 -14.624 0.010 -13.727 -14.532 1.977 -14.672 -13.472 3.444 -14.965 -3.095 -13.338 ML 140 138 6 143 6 1 2 23 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 3 21 37 -13.164 -11.893 -7.801 -11.871 -0.009 -10.084 -8.115 -7.277 -9.157 1.996 D 142 138 6 143 6 0 1 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 2 23 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 2 22 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 29 C G - - MP 145 144 6 149 4 2 6 20 35 -17.323 -17.530 -0.000 -15.944 1.675 -4.467 -14.468 -7.058 -2.204 -5.849 3.432 -5.563 -0.228 -11.637 -14.692 -13.832 -0.948 -14.984 -1.765 -4.812 ML 146 144 6 149 4 1 2 22 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 2 20 36 -11.187 -0.016 -8.083 -7.144 -6.548 -8.312 1.993 -7.308 D 148 144 6 149 4 0 1 21 38 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 2 23 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 4 19 34 -6.607 -0.017 -9.307 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 151 150 6 153 3 1 4 18 33 -18.250 -0.000 -16.904 1.974 -13.883 -6.273 -4.071 D 152 150 6 153 3 0 1 20 39 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 2 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - G - - - ML 154 153 3 156 3 1 3 17 32 -18.250 -0.000 -16.904 -0.338 -4.108 1.647 -5.655 D 155 153 3 156 3 0 1 19 38 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 2 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - - - ML 157 156 3 159 3 1 2 16 31 -18.250 -0.740 -1.318 -0.952 -1.406 -2.522 1.552 D 158 156 3 159 3 0 1 18 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 2 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - - - ML 160 159 3 162 3 1 2 15 30 -4.996 -0.046 -16.164 -3.888 -1.715 -2.719 1.797 D 161 159 3 162 3 0 1 14 29 -18.351 -0.001 -10.267 IL 162 162 3 162 3 1 2 15 30 -7.233 -0.011 -9.933 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 163 162 3 165 3 1 2 14 29 -18.249 -0.000 -16.903 -2.400 -14.434 1.925 -6.186 D 164 162 3 165 3 0 0 15 33 -8.203 -0.267 -2.594 IL 165 165 3 165 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - G - - - ML 166 165 3 168 3 1 2 13 27 -18.250 -0.000 -16.904 -12.782 -14.521 2.000 -13.515 D 167 165 3 168 3 0 0 15 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - - - ML 169 168 3 171 3 1 1 12 26 -5.287 -0.972 -1.106 -4.914 0.533 -12.257 1.333 D 170 168 3 171 3 0 0 11 24 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 2 14 27 -2.111 -0.381 -10.747 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 172 171 3 174 3 1 1 7 25 -17.349 -0.000 -16.003 -0.799 -1.680 -2.522 1.555 D 173 171 3 174 3 0 0 5 23 -18.562 -0.000 -12.954 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.812 -5.742 -1.249 -4.357 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 179 125 1 180 3 0 0 1049 2328 -18.250 -0.000 -13.989 IL 180 180 2 180 3 1 1 1050 2330 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - g - - - ML 181 180 2 183 5 1 2 1049 2328 -17.182 -0.000 -16.998 -17.210 -18.102 0.403 -1.503 0.671 -0.448 D 182 180 2 183 5 0 0 1046 2325 -5.389 -0.550 -4.650 -3.025 -2.937 IL 183 183 3 183 5 1 1 1048 2328 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 123 C G - - MP 184 183 3 188 6 2 2 1048 2327 -18.112 -18.051 -0.000 -16.827 -17.107 -17.502 -7.990 -12.110 -12.409 -1.689 -3.826 -13.253 3.676 -7.050 -6.336 -0.761 -12.781 -3.399 1.041 -12.592 -4.004 -7.735 ML 185 183 3 188 6 1 1 1045 2324 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 1044 2323 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 1037 2316 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 188 188 5 188 6 1 1 1046 2326 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 1046 2326 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 122 C G - - MP 190 189 6 194 6 2 2 1046 2325 -18.112 -18.051 -0.000 -16.827 -17.107 -17.502 1.478 -12.480 -12.717 0.219 -4.250 -13.496 3.154 -12.215 -12.591 -3.066 -13.077 -6.830 1.524 -12.922 -3.426 -11.315 ML 191 189 6 194 6 1 1 1043 2322 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 1041 2321 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 1035 2314 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 1044 2324 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 1044 2324 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 121 G C - - MP 196 195 6 200 6 2 2 1044 2323 -18.112 -18.051 -0.000 -16.827 -17.107 -17.502 -14.563 -12.879 -14.647 1.954 -14.637 -14.671 -1.164 -14.543 -13.980 3.302 -3.083 -10.462 0.764 -14.607 -12.164 -13.398 ML 197 195 6 200 6 1 1 1041 2320 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 1039 2318 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 1033 2312 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 1042 2322 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 1042 2322 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 120 G C - - MP 202 201 6 206 6 2 2 1042 2321 -18.112 -18.051 -0.000 -16.827 -17.107 -17.502 -15.232 -7.173 -5.021 -0.719 -16.597 -11.230 -0.962 -16.228 -13.896 3.878 -14.112 -2.866 -11.601 -11.271 -13.528 -14.846 ML 203 201 6 206 6 1 1 1039 2318 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 1036 2315 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 1031 2311 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 1040 2320 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 1040 2320 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 38 119 A U - - MP 208 207 6 212 4 2 2 1040 2319 -17.340 -17.547 -0.000 -15.962 -12.768 -1.952 -12.652 3.550 -13.764 -13.444 -1.309 -13.188 -12.908 0.923 -13.251 -2.079 0.236 -12.656 -3.888 -2.031 ML 209 207 6 212 4 1 1 1037 2317 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 1032 2311 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 1030 2309 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 1039 2318 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 1038 2318 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - U - - - ML 214 213 6 216 3 1 1 1038 2317 -18.250 -0.000 -16.904 -4.577 -0.749 -6.354 1.745 D 215 213 6 216 3 0 0 1026 2305 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 1037 2316 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - U - - - ML 217 216 3 219 3 1 1 1037 2316 -18.250 -0.000 -16.904 -15.388 -5.751 -16.847 1.993 D 218 216 3 219 3 0 0 1019 2299 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 1036 2315 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - g - - - ML 220 219 3 222 3 1 1 1036 2315 -18.250 -0.000 -16.904 -0.444 -0.446 0.485 0.178 D 221 219 3 222 3 0 0 1010 2289 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 1034 2313 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - u - - - ML 223 222 3 225 3 1 1 1035 2314 -18.250 -0.000 -16.904 -0.444 -0.446 0.176 0.486 D 224 222 3 225 3 0 0 994 2273 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 1031 2311 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - g - - - ML 226 225 3 228 3 1 1 1034 2313 -18.250 -0.000 -16.904 -0.445 -0.446 0.845 -0.445 D 227 225 3 228 3 0 0 961 2241 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 1028 2308 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - G - - - ML 229 228 3 231 3 1 1 1033 2312 -1.849 -0.469 -16.904 -0.205 -4.027 1.619 -12.777 D 230 228 3 231 3 0 0 824 2103 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 1121 2400 -0.021 -6.128 -19.923 0.000 0.000 0.000 0.000 [ MATL 42 ] 118 - u - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 -0.196 -0.331 0.140 0.299 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-His ACC bact-His-r2-022416 LENG 74 MAXL 1082 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 16:09:14 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-His-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-His-r2-022416.sto NSEQ 4731 EFFN 14.839419 CKSUM 3642553722 STATS LOCAL MSV -8.2696 0.71884 STATS LOCAL VITERBI -9.0796 0.71884 STATS LOCAL FORWARD -3.4873 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62087 1.40117 1.20298 1.36389 1.38629 1.38629 1.38629 1.38629 0.01331 5.01867 5.01867 1.46634 0.26236 0.00000 * 1 2.33051 2.59180 0.29500 2.48486 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01331 5.01867 5.01867 1.46634 0.26236 1.09861 0.40547 2 2.46671 1.08351 1.99836 0.81832 2 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01328 5.02157 5.02157 1.46634 0.26236 1.09861 0.40547 3 2.74750 3.05618 0.15861 3.33769 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01328 5.02157 5.02157 1.46634 0.26236 1.09861 0.40547 4 1.78595 2.51449 0.41910 2.36635 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01314 5.03202 5.03202 1.46634 0.26236 1.09861 0.40547 5 2.08018 1.10954 1.18083 1.43398 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01314 5.03207 5.03207 1.46634 0.26236 1.09861 0.40547 6 2.45869 1.48569 2.27194 0.53615 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.07283 2.75299 5.03541 0.56847 0.83561 1.09861 0.40547 7 1.86366 3.10815 0.33620 2.45657 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01676 5.03541 4.59380 1.46634 0.26236 1.09861 0.40547 8 3.21470 3.26317 3.75975 0.10728 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.01314 5.03198 5.03198 1.46634 0.26236 0.82681 0.57526 9 0.38681 3.52867 1.36981 3.28926 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.01568 5.03560 4.70468 1.46634 0.26236 1.09861 0.40547 10 2.42284 3.26376 0.18008 3.27322 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02366 5.03305 4.08269 1.46634 0.26236 0.89057 0.52834 11 3.48436 0.37362 3.11077 1.44171 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01323 5.02523 5.02523 1.46634 0.26236 1.52314 0.24593 12 3.06551 1.90436 1.45564 0.56001 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.01323 5.02523 5.02523 1.46634 0.26236 1.52314 0.24593 13 1.63216 0.67944 2.08090 1.75578 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.01323 5.02523 5.02523 1.46634 0.26236 0.57279 0.83000 14 0.03891 4.74043 4.40587 4.06131 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 15 1.63090 3.38308 0.30891 3.32262 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 16 1.89815 2.15889 2.68928 0.40531 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.44135 5.03559 1.04888 1.46634 0.26236 1.09861 0.40547 17 2.80396 2.35032 2.96152 0.23275 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04534 3.36905 4.61426 0.50119 0.93092 0.03710 3.31257 18 3.01748 4.96305 0.07117 4.35962 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03537 5.03537 1.46634 0.26236 1.07569 0.41713 19 4.72977 5.85482 0.01714 5.24076 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 20 3.16507 1.09884 3.93430 0.50257 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.56770 3.55940 0.90457 0.56342 0.84225 1.09861 0.40547 21 1.74990 2.11322 2.49011 0.47408 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02185 4.52774 4.52774 1.46634 0.26236 0.03163 3.46951 22 0.17999 3.74321 2.21075 3.46018 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02360 4.08525 5.03560 0.64954 0.73875 1.09861 0.40547 23 1.28491 2.48973 0.62647 2.24512 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 24 0.60949 1.49503 1.76298 2.80348 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 25 1.63693 3.36100 0.36014 2.61534 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 26 3.44042 0.27000 3.09424 1.83720 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.01314 5.03560 5.02859 1.46634 0.26236 1.09861 0.40547 27 1.14284 2.11131 1.08353 1.50684 33 g - - , 1.38629 1.38629 1.38629 1.38629 0.01309 5.03555 5.03555 1.46634 0.26236 1.09394 0.40781 28 2.70785 0.46730 2.29972 1.57822 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 29 1.56179 0.75245 2.51900 1.43343 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 30 1.47694 2.75727 0.52196 2.16417 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 31 2.27903 2.87660 0.22471 3.15719 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 32 0.66211 2.55275 1.26834 2.07887 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 33 3.28986 1.97786 3.90775 0.21779 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 34 4.53520 4.04752 5.07279 0.03506 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 35 1.48333 1.68175 1.21747 1.23411 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 36 1.47889 1.67368 1.39198 1.09073 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 37 1.50909 1.70753 0.97442 1.51337 43 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 38 1.54373 3.42476 0.32297 3.51102 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.28901 1.40856 5.03560 4.23334 0.01461 1.09861 0.40547 39 1.38639 1.62466 1.41045 1.17438 118 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 40 2.32266 1.35211 2.37071 0.59805 119 U - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 41 3.42560 0.25960 2.73026 2.03327 120 C - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 42 2.28588 0.57311 2.55583 1.35899 121 C - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 43 1.14703 2.69301 0.70254 2.12513 122 g - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 44 1.70581 2.47899 0.43336 2.45084 123 G - - > 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 45 1.18405 1.74304 2.01480 0.95288 124 u - - , 1.38629 1.38629 1.38629 1.38629 0.03564 5.03560 3.55741 1.46634 0.26236 1.09861 0.40547 46 1.41819 2.25120 1.18282 1.06085 125 u - - , 1.38629 1.38629 1.38629 1.38629 0.10647 2.40419 4.54142 2.16617 0.12173 0.37576 1.16080 47 2.60472 2.82005 0.33806 1.87522 144 G - - , 1.38629 1.38629 1.38629 1.38629 0.09983 5.03167 2.42498 1.46634 0.26236 0.80986 0.58864 48 2.42088 2.80108 2.34345 0.28181 145 U - - , 1.38629 1.38629 1.38629 1.38629 0.01795 4.95045 4.53656 1.46634 0.26236 0.13764 2.05118 49 2.77887 0.30978 3.56808 1.73684 146 C - - , 1.38629 1.38629 1.38629 1.38629 0.01434 5.03226 4.86446 1.46634 0.26236 1.25638 0.33503 50 2.59744 3.21834 0.14126 4.05980 147 G - - < 1.38629 1.38629 1.38629 1.38629 0.01315 5.03107 5.03107 1.46634 0.26236 1.13928 0.38574 51 1.86807 1.10265 2.18438 0.91369 148 u - - < 1.38629 1.38629 1.38629 1.38629 0.01983 4.33454 5.03226 0.80776 0.59033 1.25638 0.33503 52 2.10307 2.57170 0.28770 2.96567 150 G - - < 1.38629 1.38629 1.38629 1.38629 0.01313 5.03226 5.03226 1.46634 0.26236 0.84250 0.56323 53 3.31549 3.87012 0.07203 4.39640 151 G - - < 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 54 3.76196 5.12481 0.03619 5.05761 152 G - - < 1.38629 1.38629 1.38629 1.38629 0.04684 3.23761 5.03560 0.81019 0.58838 1.09861 0.40547 55 3.86890 3.97063 4.64529 0.05061 156 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04684 5.03560 3.23761 1.46634 0.26236 1.09861 0.40547 56 3.85672 3.73221 4.05334 0.06448 157 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01354 5.00230 5.00230 1.46634 0.26236 2.08412 0.13286 57 5.10363 0.02197 5.44128 4.48133 158 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01354 5.00230 5.00230 1.46634 0.26236 2.08412 0.13286 58 1.54793 4.23784 0.28335 3.93137 159 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01354 5.00230 5.00230 1.46634 0.26236 0.28613 1.39097 59 0.05021 4.48836 3.71828 4.30851 160 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 60 1.57194 2.93539 0.60212 1.65235 161 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01309 5.03560 5.03560 1.46634 0.26236 1.09861 0.40547 61 2.71946 1.76570 2.93983 0.34228 162 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05034 3.23761 4.62172 0.30363 1.33992 1.09861 0.40547 62 5.14782 0.04559 4.74273 3.50523 164 C - - > 1.38629 1.38629 1.38629 1.38629 0.01313 5.03226 5.03226 1.46634 0.26236 1.25638 0.33503 63 4.52078 0.08129 3.80607 3.10197 165 C - - > 1.38629 1.38629 1.38629 1.38629 0.01313 5.03226 5.03226 1.46634 0.26236 0.84250 0.56323 64 3.21022 0.34992 2.46150 1.77432 166 C - - > 1.38629 1.38629 1.38629 1.38629 0.01429 5.03560 4.86779 1.46634 0.26236 1.09861 0.40547 65 0.99019 2.29433 1.02539 1.77782 167 a - - > 1.38629 1.38629 1.38629 1.38629 0.01311 5.03441 5.03441 1.46634 0.26236 0.98993 0.46458 66 4.11244 1.89387 3.11899 0.23706 168 U - - > 1.38629 1.38629 1.38629 1.38629 0.01695 5.03560 4.57506 1.46634 0.26236 1.09861 0.40547 67 2.61045 0.37953 2.92589 1.66761 169 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03099 3.73026 5.03179 0.47667 0.96982 0.83514 0.56883 68 0.62126 2.37558 1.35640 2.18762 171 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01309 5.03541 5.03541 1.46634 0.26236 1.10848 0.40057 69 1.84048 1.75913 0.96289 1.24732 172 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01648 5.03541 4.62152 1.46634 0.26236 1.10848 0.40057 70 2.79585 0.58646 2.39320 1.23338 173 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01314 5.03207 5.03207 1.46634 0.26236 0.85093 0.55690 71 3.44550 0.18404 2.95756 2.47380 174 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01318 5.02887 5.02887 1.46634 0.26236 1.07917 0.41533 72 0.74223 2.09580 1.20612 2.28653 175 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01318 5.02907 5.02907 1.46634 0.26236 1.09861 0.40547 73 2.99420 0.36571 2.22510 1.90946 176 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02705 3.90470 5.02907 0.88596 0.53157 1.09861 0.40547 74 1.71456 0.44128 2.78517 2.16261 179 C - - : 1.38629 1.38629 1.38629 1.38629 0.75494 0.63495 * 1.10293 0.40331 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Ile2 ACC bact-Ile2-r2-022416 STATES 245 NODES 66 CLEN 77 W 317 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 16:54:01 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile2-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile2-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile2-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile2-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4753 EFFN 4753.000000 CKSUM 443421426 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.9959 0.71918 ECMLC 0.52795 -10.01674 1.91820 1600000 654153 0.001834 ECMGC 0.43653 -18.26767 -6.74136 1600000 61272 0.006528 ECMLI 0.53596 -9.12008 2.48394 1600000 602818 0.001991 ECMGI 0.42907 -16.52241 -5.00642 1600000 55973 0.007146 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 317 623 -17.141 -18.386 -0.974 -1.027 IL 1 1 2 1 4 7 22 319 624 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 8 24 319 625 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 174 - A - - MR 3 2 3 5 3 11 26 318 624 -17.576 -0.000 -15.893 2.000 -13.208 -12.465 -12.540 D 4 2 3 5 3 6 19 314 620 -18.617 -13.795 -0.000 IR 5 5 3 5 3 8 24 318 624 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 173 - C - - MR 6 5 3 8 3 10 25 317 623 -6.221 -0.019 -15.893 -14.123 2.000 -15.176 -12.339 D 7 5 3 8 3 6 19 314 620 -18.617 -13.795 -0.000 IR 8 8 3 8 3 9 25 317 623 -6.686 -0.017 -8.925 0.000 0.000 0.000 0.000 [ MATR 3 ] - 171 - C - - MR 9 8 3 11 3 9 24 316 622 -6.281 -0.019 -13.085 -14.123 2.000 -15.176 -12.339 D 10 8 3 11 3 6 19 314 620 -18.617 -0.283 -2.487 IR 11 11 3 11 3 8 23 316 622 -6.628 -0.018 -8.866 0.000 0.000 0.000 0.000 [ MATR 4 ] - 169 - A - - MR 12 11 3 14 5 10 23 315 621 -17.057 -0.040 -11.736 -5.218 -17.976 1.795 -2.631 -1.571 -4.924 D 13 11 3 14 5 6 17 311 617 -14.259 -9.614 -0.206 -13.316 -2.925 IR 14 14 3 14 5 7 20 315 621 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 168 G C - - MP 15 14 3 19 6 10 22 314 620 -17.947 -17.886 -0.058 -8.286 -4.798 -17.337 -3.487 -10.562 -11.736 -2.307 -3.580 -12.333 -0.039 -12.412 -6.194 3.577 -4.131 0.808 -0.223 -11.593 -4.899 -10.698 ML 16 14 3 19 6 8 18 312 618 -15.282 -1.318 -10.343 -0.742 -15.478 -13.008 0.683 -9.497 -10.881 1.259 MR 17 14 3 19 6 8 20 313 618 -14.186 -12.915 -0.571 -12.893 -1.617 -11.107 -3.574 1.904 -3.559 -3.498 D 18 14 3 19 6 5 14 308 614 -15.714 -14.413 -10.210 -10.892 -10.909 -0.003 IL 19 19 5 19 6 7 19 313 619 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 8 22 314 620 -1.005 -0.997 -13.483 -11.651 -12.757 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 165 G C - - MP 21 20 6 25 6 10 20 312 618 -17.967 -17.906 -0.012 -7.509 -8.361 -17.357 -12.152 -10.758 -11.981 -1.252 -13.074 -12.510 0.503 -12.653 -12.357 3.658 -12.604 -0.104 -3.620 -8.861 -0.936 -10.944 ML 22 20 6 25 6 7 16 308 614 -14.630 -14.976 -3.363 -0.156 -14.826 -7.621 -2.604 -4.750 1.826 -1.988 MR 23 20 6 25 6 8 18 311 617 -14.885 -13.614 -0.536 -13.592 -1.690 -11.806 -7.834 1.928 -2.445 -7.348 D 24 20 6 25 6 5 14 308 614 -15.714 -14.413 -10.210 -10.892 -7.691 -0.009 IL 25 25 5 25 6 7 18 311 617 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 7 18 311 617 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 164 g c - - MP 27 26 6 31 6 8 18 310 616 -18.005 -17.945 -0.064 -13.241 -4.555 -10.202 -12.255 -11.129 -8.011 1.652 -12.223 -12.784 2.278 -12.379 -12.369 2.701 -12.704 -5.340 0.558 -12.074 -8.117 -10.972 ML 28 26 6 31 6 7 15 307 613 -14.631 -14.977 -5.966 -0.024 -14.827 -12.356 -5.049 -4.412 1.830 -1.448 MR 29 26 6 31 6 7 16 309 615 -13.494 -12.223 -0.207 -12.201 -2.915 -10.414 -7.349 1.988 -7.747 -5.433 D 30 26 6 31 6 5 14 308 614 -15.737 -14.436 -0.081 -10.915 -10.932 -4.216 IL 31 31 5 31 6 6 15 309 615 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 6 15 309 615 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 163 C G - - MP 33 32 6 37 6 9 19 308 614 -17.982 -17.921 -0.001 -16.697 -10.067 -17.372 -12.268 -11.898 -8.334 -0.087 -11.185 -6.252 3.155 -11.820 -12.142 2.160 -9.591 -2.652 0.401 -12.423 -2.444 -10.854 ML 34 32 6 37 6 6 14 306 612 -1.955 -14.958 -8.363 -0.632 -14.808 -3.419 0.057 -6.622 1.559 -8.008 MR 35 32 6 37 6 5 13 305 611 -14.936 -13.665 -1.192 -13.643 -3.579 -1.064 1.085 0.774 -2.651 -6.713 D 36 32 6 37 6 4 11 303 609 -12.700 -11.398 -7.195 -7.877 -7.895 -0.023 IL 37 37 5 37 6 7 18 307 613 -8.571 -8.834 -0.009 -10.489 -11.265 -10.926 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 6 15 307 613 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 162 C G - - MP 39 38 6 43 6 9 17 306 612 -6.249 -7.236 -0.029 -16.744 -17.024 -17.419 -12.424 -12.131 -12.413 -0.427 -7.564 -6.641 3.483 -11.927 -12.276 1.381 -12.782 -6.910 -0.111 -12.602 -0.935 -10.996 ML 40 38 6 43 6 7 14 304 610 -13.984 -14.330 -9.044 -0.003 -14.179 -11.709 -7.819 -9.592 1.997 -8.580 MR 41 38 6 43 6 6 13 304 609 -11.694 -10.423 -1.096 -10.401 -0.922 -8.615 -4.036 -5.156 1.816 -1.361 D 42 38 6 43 6 4 11 303 608 -16.861 -15.559 -11.356 -0.376 -2.521 -4.184 IL 43 43 5 43 6 7 16 306 612 -1.008 -9.820 -0.998 -11.475 -12.251 -11.912 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 6 15 305 611 -6.739 -0.021 -10.251 -8.418 -9.524 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 160 g c - - MP 45 44 6 49 6 8 15 304 610 -5.795 -17.970 -0.027 -12.159 -17.027 -17.422 -12.326 -12.015 -12.325 -0.728 -4.527 -13.166 1.151 -11.850 -12.187 2.279 -12.699 -2.183 2.265 -9.254 1.658 -3.452 ML 46 44 6 49 6 6 13 303 609 -14.696 -15.042 -1.355 -0.716 -14.892 -12.421 0.642 1.285 -10.554 -8.698 MR 47 44 6 49 6 5 11 301 607 -12.342 -11.071 -4.120 -11.049 -0.090 -9.262 -4.292 -4.136 -2.306 1.884 D 48 44 6 49 6 3 9 299 605 -12.700 -11.398 -7.195 -7.877 -7.895 -0.023 IL 49 49 5 49 6 7 14 303 609 -9.019 -9.282 -0.007 -10.937 -11.713 -11.374 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 5 12 303 609 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 12 159 g c - - MP 51 50 6 55 4 6 13 302 608 -4.136 -7.217 -0.119 -6.013 -7.783 -11.042 -12.019 1.682 -7.160 -12.681 -0.569 -12.267 -12.266 2.701 -12.606 -2.312 2.205 -11.960 -0.340 -10.862 ML 52 50 6 55 4 5 12 302 608 -0.018 -11.261 -6.545 -9.990 -7.829 -5.297 1.988 -8.564 MR 53 50 6 55 4 4 10 300 606 -10.289 -9.318 -1.757 -0.511 -6.634 -6.017 -7.543 1.989 D 54 50 6 55 4 3 9 299 605 -8.130 -7.811 -1.600 -0.595 IL 55 55 5 55 4 4 11 301 607 -1.092 -12.267 -1.633 -2.263 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 6 12 301 607 -5.749 -0.031 -8.449 0.000 0.000 0.000 0.000 [ MATL 12 ] 16 - U - - - ML 57 56 6 59 3 5 11 300 606 -4.868 -0.050 -16.831 -5.243 -3.942 -3.715 1.938 D 58 56 6 59 3 3 9 298 604 -15.462 -1.856 -0.466 IL 59 59 3 59 3 4 11 304 609 -0.324 -9.682 -2.324 0.000 0.000 0.000 0.000 [ MATL 13 ] 22 - A - - - ML 60 59 3 62 2 4 10 299 605 -18.806 -0.000 1.715 -2.783 -1.083 -3.315 D 61 59 3 62 2 3 9 298 604 -14.115 -0.000 IL 62 62 3 62 2 4 10 299 605 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 3 9 298 604 [ BEGR 47 ] - - - - - - S 64 63 1 65 3 0 2 265 571 -18.256 -0.000 -16.910 IL 65 65 2 65 3 1 1 266 572 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 98 - u - - - ML 66 65 2 68 3 1 3 265 571 -18.256 -0.000 -16.910 -0.325 0.304 -2.037 0.785 D 67 65 2 68 3 0 0 247 553 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 264 570 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 99 - G - - - ML 69 68 3 71 3 1 2 264 570 -2.093 -0.385 -16.910 -1.243 -1.741 1.540 -1.435 D 70 68 3 71 3 0 0 216 522 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 2 287 593 -0.087 -4.097 -17.655 0.000 0.000 0.000 0.000 [ MATL 50 ] 129 - G - - - ML 72 71 3 74 3 1 1 60 123 -6.557 -0.135 -3.662 -0.764 -3.371 1.416 -0.632 D 73 71 3 74 3 0 0 58 122 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 60 124 -6.437 -0.019 -9.138 0.000 0.000 0.000 0.000 [ MATL 51 ] 131 - U - - - ML 75 74 3 77 3 1 2 59 122 -18.138 -0.000 -16.792 -0.708 -1.377 -2.361 1.490 D 76 74 3 77 3 0 0 58 122 -16.014 -1.885 -0.456 IL 77 77 3 77 3 1 1 60 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 132 - C - - - ML 78 77 3 80 5 1 2 58 121 -17.104 -0.021 -16.919 -6.144 -18.023 -2.748 1.343 -0.531 -0.685 D 79 77 3 80 5 0 0 58 122 -13.517 -9.361 -12.778 -0.314 -2.367 IL 80 80 3 80 5 1 1 58 122 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 133 157 G C - - MP 81 80 3 85 6 2 2 57 120 -18.012 -17.952 -0.000 -16.728 -17.008 -17.403 -11.979 -8.247 -11.797 0.093 -12.925 -12.393 1.703 -0.912 -3.484 3.392 -8.860 -1.261 -3.909 -11.652 -3.930 -10.763 ML 82 80 3 85 6 1 1 58 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 59 122 -15.466 -14.195 -10.104 -14.173 -2.237 -0.346 -7.239 -5.463 -4.311 1.971 D 84 80 3 85 6 0 0 57 120 -15.669 -14.368 -10.165 -10.847 -10.864 -0.003 IL 85 85 5 85 6 1 1 57 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 57 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 134 156 C G - - MP 87 86 6 91 6 2 2 55 118 -18.012 -17.952 -0.004 -8.436 -17.008 -17.403 -0.911 -2.353 -8.832 0.692 -11.122 -8.878 3.230 -7.564 -12.051 -2.074 -12.570 -0.923 1.695 -5.575 -2.298 -4.897 ML 88 86 6 91 6 1 1 58 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 60 124 -13.238 -11.967 -7.876 -11.945 -0.008 -10.159 -3.483 -5.425 -6.366 1.954 D 90 86 6 91 6 0 0 56 120 -18.042 -16.740 -12.537 -13.219 -13.237 -0.001 IL 91 91 5 91 6 1 1 56 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 56 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 135 155 g c - - MP 93 92 6 97 6 2 2 53 116 -18.008 -17.947 -0.007 -16.724 -17.004 -7.757 -11.996 -9.015 -3.755 2.128 -5.670 -0.908 0.287 -12.415 -12.223 2.552 -12.490 -2.507 1.864 -8.380 -3.365 -10.766 ML 94 92 6 97 6 1 1 59 123 -10.524 -10.870 -4.355 -0.080 -10.720 -8.249 1.922 -4.728 -2.933 -4.547 MR 95 92 6 97 6 1 1 59 123 -13.238 -11.967 -7.876 -11.945 -0.008 -10.159 -6.479 -3.854 1.968 -7.184 D 96 92 6 97 6 0 0 56 120 -18.042 -16.740 -12.537 -13.219 -13.237 -0.001 IL 97 97 5 97 6 1 1 55 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 54 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 136 154 G C - - MP 99 98 6 103 6 2 2 51 114 -18.002 -17.941 -0.092 -5.145 -4.900 -17.392 -13.685 -9.134 -13.716 0.387 -14.869 -13.550 -4.014 -14.243 -4.508 3.720 -13.620 -0.771 -0.278 -13.252 -11.926 -12.622 ML 100 98 6 103 6 1 1 58 122 -10.483 -10.829 -5.543 -0.039 -10.679 -8.208 -4.575 -6.159 1.970 -5.309 MR 101 98 6 103 6 1 1 58 122 -13.238 -11.967 -5.475 -11.945 -0.035 -10.159 -3.713 -8.238 1.969 -7.280 D 102 98 6 103 6 0 0 56 120 -18.144 -16.842 -12.639 -13.321 -13.339 -0.001 IL 103 103 5 103 6 1 1 52 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 52 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 137 153 G C - - MP 105 104 6 109 4 2 2 44 108 -17.139 -17.346 -0.021 -6.127 -15.326 -3.675 -16.392 -9.725 -17.208 -13.861 -11.766 -16.267 -13.815 3.984 -14.079 -3.778 -12.050 -14.245 -14.097 -5.163 ML 106 104 6 109 4 1 1 57 121 -10.962 -11.144 -3.400 -0.145 -6.751 -6.544 -1.484 1.857 MR 107 104 6 109 4 1 1 57 121 -13.029 -12.058 -9.925 -0.002 0.181 1.517 -9.900 -8.294 D 108 104 6 109 4 0 0 56 120 -13.566 -13.247 -11.263 -0.001 IL 109 109 5 109 4 1 1 50 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 50 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 138 - U - - - ML 111 110 6 113 3 1 1 25 88 -18.031 -0.000 -16.686 -5.681 -6.732 -6.242 1.985 D 112 110 6 113 3 0 0 57 120 -16.883 -2.616 -0.257 IL 113 113 3 113 3 1 1 51 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 139 - U - - - ML 114 113 3 116 3 1 1 23 87 -18.071 -0.000 -16.725 -6.267 -6.905 -5.069 1.981 D 115 113 3 116 3 0 0 57 121 -16.627 -12.140 -0.000 IL 116 116 3 116 3 1 1 51 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 140 - C - - - ML 117 116 3 119 3 1 1 21 85 -18.071 -0.000 -16.725 -12.182 1.991 -6.500 -6.299 D 118 116 3 119 3 0 0 57 121 -2.212 -12.140 -0.351 IL 119 119 3 119 3 1 1 60 124 -0.417 -1.994 -12.394 0.000 0.000 0.000 0.000 [ MATL 61 ] 145 - G - - - ML 120 119 3 122 3 1 1 17 81 -18.113 -0.027 -5.761 0.272 -13.019 1.471 -5.703 D 121 119 3 122 3 0 0 55 119 -1.616 -1.029 -2.443 IL 122 122 3 122 3 1 1 59 123 -0.417 -1.995 -12.638 0.000 0.000 0.000 0.000 [ MATL 62 ] 150 - A - - - ML 123 122 3 125 3 1 1 8 26 -18.206 -0.000 -16.860 1.978 -4.542 -13.094 -5.891 D 124 122 3 125 3 0 0 9 27 -14.803 -0.231 -2.758 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 151 - g - - - ML 126 125 3 128 3 1 1 6 24 -18.249 -0.000 -16.903 0.235 -0.712 0.811 -1.127 D 127 125 3 128 3 0 0 9 28 -12.053 -7.566 -0.008 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 152 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -4.677 -0.847 -3.758 1.736 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 0 3 98 198 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 188 0 3 98 198 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 3 36 62 -0.066 -5.792 -7.535 -5.571 [ MATP 18 ] 23 54 G C - - MP 136 135 1 140 6 2 5 36 62 -18.053 -5.969 -0.164 -3.562 -17.048 -7.156 -15.589 -12.626 -16.836 -3.094 -3.157 -13.938 -11.908 -16.665 -13.963 3.915 -4.686 -1.203 -2.221 -14.346 -14.269 -15.574 ML 137 135 1 140 6 1 4 34 57 -13.212 -13.558 -8.272 -0.006 -13.408 -10.937 1.996 -8.592 -7.843 -7.966 MR 138 135 1 140 6 1 3 32 57 -12.032 -10.761 -6.670 -10.740 -0.197 -3.101 -6.179 1.982 -6.630 -5.281 D 139 135 1 140 6 0 1 30 54 -16.576 -15.275 -11.072 -11.754 -11.771 -0.002 IL 140 140 5 140 6 1 3 38 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 4 39 65 -1.010 -0.994 -12.485 -10.653 -11.759 0.000 0.000 0.000 0.000 [ MATP 19 ] 24 51 C G - - MP 142 141 6 146 6 2 6 32 55 -17.914 -5.938 -0.054 -5.596 -16.910 -17.305 -14.972 -15.254 -14.289 -11.490 -3.972 -14.433 3.959 -13.555 -14.393 -4.038 -14.513 -13.658 -2.421 -14.806 -2.887 -13.194 ML 143 141 6 146 6 1 3 33 56 -15.658 -16.004 -10.719 -0.236 -15.854 -2.737 1.260 -0.733 -0.812 -1.207 MR 144 141 6 146 6 1 4 31 54 -11.857 -10.586 -0.034 -10.564 -5.698 -8.778 -3.829 -3.681 -2.219 1.863 D 145 141 6 146 6 0 1 30 54 -17.006 -15.704 -11.501 -2.086 -5.473 -0.431 IL 146 146 5 146 6 1 3 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 4 31 54 -7.884 -0.009 -11.395 -9.563 -10.669 0.000 0.000 0.000 0.000 [ MATP 20 ] 25 49 U A - - MP 148 147 6 152 6 2 5 30 53 -17.892 -4.891 -0.064 -6.783 -11.772 -17.283 -14.368 -14.396 -13.915 -1.162 -3.610 -14.226 0.854 -13.248 -13.944 -1.045 -14.179 -12.331 3.696 -3.574 -2.930 -12.719 ML 149 147 6 152 6 1 3 32 55 -15.794 -16.140 -10.855 -0.093 -15.990 -4.021 -0.612 -11.008 1.742 -10.202 MR 150 147 6 152 6 1 3 29 52 -9.245 -7.974 -0.220 -7.952 -3.086 -6.166 -2.633 1.797 -3.457 -1.875 D 151 147 6 152 6 0 1 29 53 -17.344 -16.043 -11.840 -12.522 -0.775 -1.268 IL 152 152 5 152 6 1 3 30 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 4 29 53 -2.176 -0.362 -12.761 -10.929 -12.035 0.000 0.000 0.000 0.000 [ MATP 21 ] 26 46 C G - - MP 154 153 6 158 4 2 4 28 51 -17.108 -5.445 -0.091 -4.708 0.593 -15.205 -9.182 -11.436 -2.617 -5.636 3.566 -13.516 0.087 -1.900 -14.474 -13.597 0.097 -14.764 -4.076 -13.153 ML 155 153 6 158 4 1 4 31 54 -3.397 -1.353 -0.962 -11.804 -0.975 0.813 0.094 -0.586 MR 156 153 6 158 4 1 2 23 46 -12.008 -11.037 -6.245 -0.020 -7.308 -9.081 1.996 -8.070 D 157 153 6 158 4 0 1 30 54 -1.693 -11.716 -9.732 -0.537 IL 158 158 5 158 4 1 4 32 55 -1.403 -2.042 -1.400 -12.212 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 4 30 54 -1.134 -0.878 -12.679 0.000 0.000 0.000 0.000 [ MATL 22 ] 29 - A - - - ML 160 159 6 162 3 1 3 24 43 -18.154 -0.028 -5.696 1.870 -13.920 -14.069 -1.542 D 161 159 6 162 3 0 1 20 39 -15.805 -11.318 -0.001 IL 162 162 3 162 3 1 2 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 30 - G - - - ML 163 162 3 165 3 1 3 23 42 -18.126 -0.000 -16.780 -0.786 -3.043 1.637 -2.401 D 164 162 3 165 3 0 1 20 39 -16.141 -2.536 -0.273 IL 165 165 3 165 3 1 2 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 31 - U - - - ML 166 165 3 168 3 1 2 22 41 -18.149 -0.773 -1.270 -2.415 0.249 -2.572 1.296 D 167 165 3 168 3 0 1 14 33 -15.869 -11.382 -0.001 IL 168 168 3 168 3 1 2 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 32 - U - - - ML 169 168 3 171 3 1 2 21 40 -2.684 -0.244 -12.009 -3.865 0.284 -5.080 1.424 D 170 168 3 171 3 0 1 10 29 -18.544 -0.000 -12.936 IL 171 171 3 171 3 1 1 22 41 -1.388 -0.831 -4.166 0.000 0.000 0.000 0.000 [ MATL 26 ] 36 - G - - - ML 172 171 3 174 3 1 2 10 28 -7.298 -0.009 -16.899 -5.547 -2.938 1.944 -12.887 D 173 171 3 174 3 0 0 11 29 -12.679 -0.034 -5.428 IL 174 174 3 174 3 1 1 10 29 -5.716 -0.032 -8.416 0.000 0.000 0.000 0.000 [ MATL 27 ] 38 - G - - - ML 175 174 3 177 3 1 1 9 27 -18.256 -0.010 -7.208 -6.269 -14.554 1.995 -13.527 D 176 174 3 177 3 0 0 14 33 -7.458 -2.971 -0.206 IL 177 177 3 177 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 39 - U - - - ML 178 177 3 180 3 1 1 7 26 -4.974 -0.303 -2.664 -1.964 -1.558 -3.666 1.733 D 179 177 3 180 3 0 0 6 24 -12.509 -8.022 -0.006 IL 180 180 3 180 3 1 1 7 26 -7.981 -0.007 -10.681 0.000 0.000 0.000 0.000 [ MATL 29 ] 41 - U - - - ML 181 180 3 183 3 1 1 6 25 -17.999 -0.000 -16.653 -2.324 -0.923 -1.198 1.504 D 182 180 3 183 3 0 0 6 24 -17.063 -0.001 -11.455 IL 183 183 3 183 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 42 - A - - - ML 184 183 3 186 2 1 1 1 1 * 0.000 1.722 -6.784 -1.175 -2.008 D 185 183 3 186 2 0 0 0 0 * 0.000 IL 186 186 3 186 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 187 186 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 188 134 1 189 3 0 0 81 181 -18.256 -0.209 -2.893 IL 189 189 2 189 3 1 1 83 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 55 - A - - - ML 190 189 2 192 5 1 1 82 182 -16.981 -0.000 -16.796 -17.008 -17.900 1.403 -1.235 -1.107 -1.098 D 191 189 2 192 5 0 0 59 157 -14.740 -10.584 -14.001 -1.316 -0.743 IL 192 192 3 192 5 1 1 82 182 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 56 97 g u - - MP 193 192 3 197 6 2 2 81 181 -17.910 -17.849 -0.000 -13.990 -16.905 -17.300 -5.463 -1.642 -4.805 1.218 -0.920 -10.158 0.617 0.696 -1.859 1.636 -6.978 2.244 -0.591 -0.425 -4.566 -4.987 ML 194 192 3 197 6 1 1 78 179 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 3 197 6 1 1 62 161 -15.323 -14.052 -9.961 -14.031 -0.002 -12.244 -11.161 -9.884 -12.601 1.999 D 196 192 3 197 6 0 0 52 138 -18.508 -17.206 -13.003 -13.685 -13.703 -0.000 IL 197 197 5 197 6 1 1 80 180 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 80 180 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 57 96 C G - - MP 199 198 6 203 6 2 2 79 179 -17.910 -17.849 -0.000 -16.626 -16.905 -17.300 -12.213 -8.152 -12.206 1.119 -11.119 -13.042 3.032 -11.757 -12.082 1.675 -12.588 -1.749 1.065 -12.377 -4.093 -10.797 ML 200 198 6 203 6 1 1 77 177 -6.635 -6.981 -0.881 -1.390 -6.831 -4.361 0.095 -0.783 0.593 -0.247 MR 201 198 6 203 6 1 1 61 160 -15.323 -14.052 -8.466 -14.031 -0.715 -1.367 1.939 -2.622 -8.944 -8.714 D 202 198 6 203 6 0 0 52 136 -18.508 -17.206 -13.003 -13.685 -13.703 -0.000 IL 203 203 5 203 6 1 1 78 178 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 78 178 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 58 95 c g - - MP 205 204 6 209 6 2 2 77 177 -17.910 -17.849 -0.000 -16.626 -16.906 -17.301 -6.147 -11.877 -7.655 0.593 -4.400 -13.037 2.736 -11.732 -12.065 2.596 -4.298 -7.518 -0.356 -12.374 -0.308 -3.842 ML 206 204 6 209 6 1 1 74 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 62 161 -14.612 -13.341 -9.250 -13.319 -0.003 -11.533 1.894 -8.408 -1.853 -8.178 D 208 204 6 209 6 0 0 52 134 -18.842 -17.540 -13.337 -14.019 -14.037 -0.000 IL 209 209 5 209 6 1 1 76 176 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 76 176 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 59 94 G C - - MP 211 210 6 215 6 2 2 75 175 -17.910 -17.849 -0.004 -8.600 -16.906 -17.301 -11.879 -10.141 -11.698 0.593 -12.828 -1.826 -0.279 -3.659 -12.135 3.715 -12.381 -3.404 -4.288 -10.865 -5.213 -10.663 ML 212 210 6 215 6 1 1 70 170 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 6 1 1 61 160 -14.612 -13.341 -3.803 -13.319 -0.108 -11.533 -9.194 1.998 -9.754 -8.036 D 214 210 6 215 6 0 0 52 132 -18.842 -17.540 -13.337 -14.019 -14.037 -0.000 IL 215 215 5 215 6 1 1 74 174 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 74 174 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 60 93 A U - - MP 217 216 6 221 4 2 2 73 173 -4.218 -17.346 -0.110 -5.656 -12.423 -1.458 -12.289 3.261 -13.504 -13.030 -1.909 -3.100 -12.597 2.359 -12.914 -4.837 -1.145 -12.251 -10.590 -4.304 ML 218 216 6 221 4 1 1 59 158 -7.385 -7.568 -4.134 -0.102 1.968 -5.398 -4.831 -5.086 MR 219 216 6 221 4 1 1 53 139 -12.532 -11.561 -9.429 -0.003 -10.129 -8.971 -11.437 1.999 D 220 216 6 221 4 0 0 52 131 -14.264 -13.945 -11.961 -0.001 IL 221 221 5 221 4 1 1 72 172 -0.628 -1.504 -10.725 -14.462 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 1 69 169 -0.863 -2.507 -1.866 0.000 0.000 0.000 0.000 [ MATL 39 ] 65 - C - - - ML 223 222 6 225 3 1 1 71 171 -5.427 -0.034 -16.624 -14.919 2.000 -16.066 -13.058 D 224 222 6 225 3 0 0 52 126 -17.202 -12.715 -0.000 IL 225 225 3 225 3 1 1 91 191 -0.265 -9.181 -2.588 0.000 0.000 0.000 0.000 [ MATL 40 ] 72 - U - - - ML 226 225 3 228 3 1 1 50 115 -4.253 -0.113 -5.467 -15.245 -13.851 -16.843 2.000 D 227 225 3 228 3 0 0 52 116 -17.347 -12.860 -0.000 IL 228 228 3 228 3 1 1 59 124 -0.482 -9.555 -1.822 0.000 0.000 0.000 0.000 [ MATL 41 ] 78 - u - - - ML 229 228 3 231 3 1 1 20 85 -17.823 -0.000 -16.478 0.001 -0.001 -0.001 0.001 D 230 228 3 231 3 0 0 52 116 -17.728 -13.241 -0.000 IL 231 231 3 231 3 1 1 45 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 79 - u - - - ML 232 231 3 234 3 1 1 19 83 -17.823 -0.000 -16.478 0.001 -0.001 -0.001 0.001 D 233 231 3 234 3 0 0 52 116 -17.728 -13.241 -0.000 IL 234 234 3 234 3 1 1 45 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 80 - u - - - ML 235 234 3 237 3 1 1 17 81 -17.823 -0.000 -16.478 0.001 -0.001 -0.001 0.001 D 236 234 3 237 3 0 0 52 116 -2.791 -3.889 -0.344 IL 237 237 3 237 3 1 1 59 123 -0.413 -2.008 -12.927 0.000 0.000 0.000 0.000 [ MATL 44 ] 86 - A - - - ML 238 237 3 240 3 1 1 8 34 -17.927 -0.000 -16.581 1.968 -13.731 -3.513 -13.145 D 239 237 3 240 3 0 0 20 46 -4.515 -12.897 -0.065 IL 240 240 3 240 3 1 1 25 51 -1.007 -0.996 -9.871 0.000 0.000 0.000 0.000 [ MATL 45 ] 89 - A - - - ML 241 240 3 243 2 1 1 1 1 * 0.000 2.000 -13.865 -13.128 -13.196 D 242 240 3 243 2 0 0 0 0 * 0.000 IL 243 243 3 243 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 244 243 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Ile2 ACC bact-Ile2-r2-022416 LENG 77 MAXL 319 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 16:54:01 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile2-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile2-r2-022416.sto NSEQ 4753 EFFN 16.295467 CKSUM 443421426 STATS LOCAL MSV -8.5438 0.71918 STATS LOCAL VITERBI -9.4426 0.71918 STATS LOCAL FORWARD -3.1498 0.71918 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.51353 1.30888 1.26466 1.48100 1.38629 1.38629 1.38629 1.38629 0.25618 1.67504 3.25192 0.37189 1.16935 0.00000 * 1 2.15039 2.41121 0.37358 2.24820 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04003 5.34009 3.36851 1.46634 0.26236 1.09861 0.40547 2 2.21006 2.33274 0.33620 2.54090 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01261 5.32571 4.87118 1.46634 0.26236 0.57590 0.82598 3 1.65315 1.34671 0.90338 1.94307 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.04759 5.34861 3.17673 1.46634 0.26236 0.45517 1.00605 4 2.28795 0.79477 1.31873 1.71834 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02654 4.11087 4.62563 0.51115 0.91581 0.87864 0.53674 5 2.47726 0.58066 1.71013 1.73924 7 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02117 4.12402 5.34580 0.90330 0.51958 0.46938 0.98187 6 2.36447 1.53159 1.30816 0.86871 10 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02501 3.91087 5.36575 0.41537 1.07908 1.35458 0.29848 7 1.62382 2.25757 0.86491 1.28315 12 g - - ( 1.38629 1.38629 1.38629 1.38629 0.10557 2.50017 4.01094 0.46432 0.99038 1.37460 0.29161 8 3.47475 3.21424 3.53600 0.10568 16 U - - , 1.38629 1.38629 1.38629 1.38629 0.07240 3.37074 3.33876 1.39354 0.28528 0.57840 0.82279 9 0.25817 2.88578 2.14389 2.90912 22 A - - , 1.38629 1.38629 1.38629 1.38629 0.02988 5.33735 3.70384 1.46634 0.26236 0.33355 1.26011 10 2.55333 3.27658 0.17784 3.05033 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.01580 5.34898 4.51707 1.46634 0.26236 2.09339 0.13155 11 3.41807 0.09995 3.98115 3.13081 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02360 5.34279 3.98767 1.46634 0.26236 1.07377 0.41812 12 2.53497 1.64616 2.08634 0.50450 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.00986 5.33962 5.29463 1.46634 0.26236 2.19375 0.11822 13 2.01422 0.60078 1.98744 1.70846 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.05061 4.23476 3.35607 0.92994 0.50183 2.25707 0.11055 14 0.11223 4.07415 4.17825 2.60597 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02745 5.30968 3.81076 1.46634 0.26236 2.78624 0.06363 15 1.85775 2.98926 0.32756 2.61765 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01011 5.29235 5.29235 1.46634 0.26236 1.62534 0.21921 16 2.39351 1.26864 2.77424 0.57078 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.47736 5.30671 0.98184 1.46634 0.26236 2.82255 0.06130 17 2.59167 1.30541 3.19280 0.48941 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15627 1.99056 4.82155 0.48684 0.95339 0.02213 3.82183 18 3.82994 3.51054 0.06541 4.44592 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01506 4.57545 5.37288 0.74146 0.64706 1.10656 0.40151 19 4.53522 5.90459 0.01864 5.29430 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01547 5.37288 4.53680 1.46634 0.26236 1.10656 0.40151 20 2.54589 2.36022 3.37265 0.23206 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.19782 3.40418 1.92247 0.26060 1.47222 1.46586 0.26251 21 2.28192 1.93804 2.19341 0.44256 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01094 5.21413 5.21413 1.46634 0.26236 0.05945 2.85224 22 0.24509 3.59990 2.17118 2.57702 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.13487 3.03311 2.55094 0.56707 0.83744 1.09861 0.40547 23 1.41101 2.50726 0.53475 2.42139 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.11273 3.41244 2.60844 0.45772 1.00164 2.01701 0.14278 24 0.49549 2.52027 1.49073 2.46411 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.02630 3.91379 5.11775 0.46890 0.98268 1.93557 0.15588 25 3.72926 4.88736 0.04047 4.81406 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.02631 3.87621 5.25146 0.87284 0.54088 0.42437 1.06184 26 3.16303 0.21533 3.19462 2.20322 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.12261 5.33725 2.20201 1.46634 0.26236 0.85480 0.55403 27 0.55482 2.05971 2.02448 1.79415 55 A - - , 1.38629 1.38629 1.38629 1.38629 0.01061 5.24407 5.24407 1.46634 0.26236 3.36956 0.03501 28 1.59829 1.44680 1.05088 1.54737 56 g - - < 1.38629 1.38629 1.38629 1.38629 0.01061 5.24407 5.24407 1.46634 0.26236 3.36956 0.03501 29 1.94429 0.84138 1.52385 1.57058 57 c - - < 1.38629 1.38629 1.38629 1.38629 0.01061 5.24407 5.24407 1.46634 0.26236 3.35057 0.03569 30 2.06375 1.01130 1.13181 1.67757 58 c - - < 1.38629 1.38629 1.38629 1.38629 0.01061 5.24417 5.24417 1.46634 0.26236 3.36890 0.03503 31 1.91086 2.42161 0.35067 2.82931 59 G - - < 1.38629 1.38629 1.38629 1.38629 0.01061 5.24417 5.24417 1.46634 0.26236 2.99796 0.05118 32 0.81944 2.76560 0.86487 2.58662 60 a - - < 1.38629 1.38629 1.38629 1.38629 0.08086 2.94382 3.68823 0.85672 0.55261 3.35331 0.03559 33 5.04006 0.02342 5.38360 4.41581 65 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06203 3.68117 3.35372 1.59061 0.22791 3.47656 0.03140 34 4.73457 4.43955 5.30184 0.02590 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10081 2.98493 3.09330 0.97593 0.47295 3.63377 0.02677 35 1.30181 1.48010 1.49387 1.28793 78 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06018 5.15593 2.94430 1.46634 0.26236 3.80773 0.02245 36 1.30181 1.48010 1.49387 1.28793 79 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01217 5.10792 5.10792 1.46634 0.26236 1.86299 0.16866 37 1.30181 1.48010 1.49387 1.28793 80 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05511 3.04020 5.15086 1.14213 0.38440 2.01668 0.14283 38 0.04467 4.78546 3.65802 4.65043 86 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02121 4.17587 5.18006 0.61976 0.77235 1.83611 0.17368 39 0.01734 5.38997 4.98565 5.15083 89 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06443 2.90786 4.85234 0.57766 0.82373 0.95085 0.48843 40 2.79841 0.90715 2.66768 0.76356 93 u - - > 1.38629 1.38629 1.38629 1.38629 0.01029 5.27511 5.27511 1.46634 0.26236 2.78133 0.06396 41 3.06897 0.38290 2.43631 1.69192 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.01026 5.27731 5.27731 1.46634 0.26236 3.12074 0.04513 42 1.95353 1.20254 0.89204 1.91067 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.01031 5.27731 5.26870 1.46634 0.26236 1.49709 0.25332 43 1.62980 1.66228 0.81147 1.77125 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.01006 5.29785 5.29785 1.46634 0.26236 2.91456 0.05575 44 1.73084 1.51445 1.57275 0.92770 97 u - - > 1.38629 1.38629 1.38629 1.38629 0.01005 5.29789 5.29789 1.46634 0.26236 0.11381 2.22956 45 1.48888 1.26220 2.34097 0.92860 98 u - - , 1.38629 1.38629 1.38629 1.38629 0.00932 5.37299 5.37299 1.46634 0.26236 1.09861 0.40547 46 2.02659 2.48611 0.39130 2.21817 99 G - - , 1.38629 1.38629 1.38629 1.38629 0.24831 1.53598 5.37299 2.83053 0.06079 1.09861 0.40547 47 1.80027 2.95584 0.47562 1.82502 129 G - - , 1.38629 1.38629 1.38629 1.38629 0.09403 4.25622 2.58266 0.56150 0.84479 1.09861 0.40547 48 1.74771 2.11644 2.56716 0.46423 131 U - - , 1.38629 1.38629 1.38629 1.38629 0.01004 5.29942 5.29942 1.46634 0.26236 1.26926 0.32995 49 2.42353 0.58284 1.87549 1.61043 132 C - - , 1.38629 1.38629 1.38629 1.38629 0.02266 5.31988 4.04464 1.46634 0.26236 2.64952 0.07331 50 2.05104 1.67823 0.47832 2.73535 133 G - - < 1.38629 1.38629 1.38629 1.38629 0.00996 5.30718 5.30718 1.46634 0.26236 2.81701 0.06165 51 1.81223 0.79332 2.10384 1.33795 134 c - - < 1.38629 1.38629 1.38629 1.38629 0.00996 5.30718 5.30718 1.46634 0.26236 2.81701 0.06165 52 1.40073 1.94683 0.94375 1.50647 135 g - - < 1.38629 1.38629 1.38629 1.38629 0.01412 5.30718 4.70344 1.46634 0.26236 2.81701 0.06165 53 2.04324 3.18038 0.28431 2.57322 136 G - - < 1.38629 1.38629 1.38629 1.38629 0.04055 5.30306 3.35920 1.46634 0.26236 2.82126 0.06138 54 3.21088 4.26236 0.08076 3.76471 137 G - - < 1.38629 1.38629 1.38629 1.38629 0.04964 5.27305 3.13955 1.46634 0.26236 3.15684 0.04349 55 3.54726 3.50887 4.02965 0.07960 138 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01072 5.23413 5.23413 1.46634 0.26236 1.71751 0.19786 56 3.57880 3.50976 3.87416 0.08184 139 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01046 5.25812 5.25812 1.46634 0.26236 1.47260 0.26049 57 4.62075 0.03673 4.68631 4.07476 140 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03642 3.48382 5.28407 1.14472 0.38318 1.11650 0.39664 58 1.22627 4.03670 0.41239 3.61589 145 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05679 3.37012 3.87153 1.13831 0.38619 0.42989 1.05149 59 0.03890 4.18885 4.59394 4.35212 150 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00962 5.34191 5.34191 1.46634 0.26236 0.36978 1.17404 60 1.23054 1.84095 0.96885 1.77383 151 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00937 5.36849 5.36849 1.46634 0.26236 1.37770 0.29056 61 3.31831 2.02646 3.49402 0.22114 152 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09121 5.36850 2.49485 1.46634 0.26236 1.37770 0.29056 62 3.99357 0.09393 4.14086 2.89474 153 C - - > 1.38629 1.38629 1.38629 1.38629 0.01016 5.28745 5.28745 1.46634 0.26236 1.22830 0.34643 63 2.68285 0.35297 2.94297 1.73542 154 C - - > 1.38629 1.38629 1.38629 1.38629 0.00998 5.31266 5.29746 1.46634 0.26236 2.14457 0.12456 64 1.61424 0.97590 1.89161 1.29728 155 c - - > 1.38629 1.38629 1.38629 1.38629 0.00987 5.31667 5.31667 1.46634 0.26236 2.27714 0.10823 65 1.41595 2.32802 0.73326 1.71771 156 g - - > 1.38629 1.38629 1.38629 1.38629 0.00984 5.31921 5.31921 1.46634 0.26236 0.34433 1.23338 66 2.88172 0.58095 1.72602 1.57695 157 C - - > 1.38629 1.38629 1.38629 1.38629 0.01673 4.52323 5.16056 0.73303 0.65480 0.49024 0.94799 67 1.45703 0.94297 1.90829 1.47285 159 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02831 5.34341 3.76654 1.46634 0.26236 1.12230 0.39383 68 1.27144 1.38271 1.05315 2.12163 160 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02003 4.53370 4.70044 0.74534 0.64355 1.94461 0.15437 69 2.01089 1.81596 0.50398 2.30934 162 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01003 5.30906 5.29235 1.46634 0.26236 0.48472 0.95678 70 1.86015 1.41311 0.74089 2.08524 163 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01055 5.31724 5.18688 1.46634 0.26236 1.23989 0.34167 71 2.08008 0.96391 1.27974 1.53446 164 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01266 5.31565 4.87129 1.46634 0.26236 0.71684 0.67000 72 3.00910 0.42183 2.07988 1.77269 165 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03969 3.38112 5.31760 2.65492 0.07290 0.84556 0.56092 73 2.49126 0.46754 2.32661 1.64492 168 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01013 5.29083 5.29083 1.46634 0.26236 1.06933 0.42043 74 0.19980 2.90470 2.40454 3.32332 169 A - - : 1.38629 1.38629 1.38629 1.38629 0.05886 4.00450 3.24604 0.72817 0.65931 1.09217 0.40870 75 4.55697 0.03811 4.96654 3.91529 171 C - - : 1.38629 1.38629 1.38629 1.38629 0.02795 3.94948 4.79163 0.71341 0.67328 1.92276 0.15806 76 4.55697 0.03811 4.96654 3.91529 173 C - - : 1.38629 1.38629 1.38629 1.38629 0.01674 4.79163 4.79163 1.46634 0.26236 0.34588 1.22961 77 0.03000 4.82573 4.44437 4.62667 174 A - - : 1.38629 1.38629 1.38629 1.38629 0.21672 1.63557 * 0.37189 1.16935 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Ile ACC bact-Ile-r2-022416 STATES 245 NODES 66 CLEN 77 W 1182 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 16:37:41 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ile-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10250 EFFN 10250.000000 CKSUM 341964354 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4284 0.71884 ECMLC 0.63356 -8.49857 1.53811 1600000 693117 0.001731 ECMGC 0.32374 -36.09213 -22.82194 1600000 29365 0.013622 ECMLI 0.58266 -9.03964 1.77848 1600000 655665 0.001830 ECMGI 0.33674 -34.35549 -21.67389 1600000 28621 0.013976 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1182 2527 -18.249 -19.495 -0.993 -1.007 IL 1 1 2 1 4 17 39 1185 2531 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 41 1186 2531 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 267 - A - - MR 3 2 3 5 3 20 43 1185 2530 -18.665 -0.000 -16.982 2.000 -14.292 -13.560 -13.622 D 4 2 3 5 3 15 35 1181 2527 -19.745 -14.923 -0.000 IR 5 5 3 5 3 17 40 1185 2530 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 266 - C - - MR 6 5 3 8 3 19 42 1184 2529 -18.665 -0.000 -16.982 -15.374 2.000 -16.573 -13.475 D 7 5 3 8 3 15 35 1181 2527 -19.745 -14.923 -0.000 IR 8 8 3 8 3 17 40 1184 2529 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 265 - C - - MR 9 8 3 11 3 18 41 1183 2528 -18.665 -0.000 -16.982 -15.374 2.000 -16.573 -13.475 D 10 8 3 11 3 15 35 1181 2527 -19.745 -0.033 -5.448 IR 11 11 3 11 3 15 34 1182 2527 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 264 - A - - MR 12 11 3 14 5 17 40 1182 2527 -6.340 -0.086 -18.096 -4.523 -8.839 1.637 -5.788 -0.228 -5.830 D 13 11 3 14 5 12 28 1167 2512 -12.430 -7.785 -10.057 -11.488 -0.009 IR 14 14 3 14 5 18 40 1180 2525 -8.762 -1.046 -0.965 -10.440 -11.546 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 262 G C - - MP 15 14 3 19 6 22 42 1181 2526 -19.132 -19.071 -0.000 -14.848 -18.128 -18.523 -0.029 -11.521 -3.382 0.939 -14.136 -13.607 -0.730 -13.676 -13.419 3.400 -13.674 0.617 -1.677 -12.862 -11.211 -11.956 ML 16 14 3 19 6 18 38 1177 2522 -12.811 -13.157 -7.872 -0.008 -13.007 -10.537 1.995 -8.220 -7.483 -7.613 MR 17 14 3 19 6 19 40 1180 2525 -16.098 -14.827 -0.078 -14.805 -4.251 -13.019 -10.203 -2.583 -11.072 1.938 D 18 14 3 19 6 12 28 1167 2512 -17.046 -15.744 -11.541 -12.223 -12.241 -0.001 IL 19 19 5 19 6 16 35 1179 2525 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 16 35 1179 2525 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 261 G C - - MP 21 20 6 25 6 22 40 1179 2524 -19.194 -19.133 -0.004 -17.909 -8.373 -18.584 -13.256 -5.190 -13.088 -3.650 -5.193 -13.690 1.380 -13.645 -6.477 3.608 -10.779 -2.788 -0.139 -12.963 -8.379 -12.021 ML 22 20 6 25 6 18 37 1176 2521 -12.817 -13.164 -6.864 -0.014 -13.013 -10.543 -6.723 -8.491 1.994 -7.484 MR 23 20 6 25 6 17 35 1174 2519 -11.868 -10.597 -5.692 -10.575 -0.034 -8.789 -4.445 1.409 0.302 -3.912 D 24 20 6 25 6 12 28 1167 2512 -17.046 -15.744 -11.541 -12.223 -12.241 -0.001 IL 25 25 5 25 6 16 35 1178 2523 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 16 35 1177 2523 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 260 G C - - MP 27 26 6 31 6 22 38 1177 2522 -19.189 -19.129 -0.002 -9.346 -15.618 -18.580 -13.160 -2.257 -12.980 -0.253 -14.078 -10.491 1.029 -13.659 -7.573 3.579 -13.661 -6.048 -0.242 -11.095 -3.492 -11.942 ML 28 26 6 31 6 18 36 1175 2520 -12.811 -13.157 -7.872 -0.008 -13.007 -10.537 1.995 -8.220 -7.483 -7.613 MR 29 26 6 31 6 17 34 1172 2518 -13.054 -11.783 -5.219 -11.762 -0.042 -9.975 -4.237 0.734 -3.427 1.132 D 30 26 6 31 6 12 28 1167 2512 -17.046 -15.744 -11.541 -12.223 -2.652 -0.251 IL 31 31 5 31 6 16 34 1176 2521 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 16 35 1176 2521 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 259 c g - - MP 33 32 6 37 6 21 36 1175 2520 -19.187 -7.347 -0.009 -17.903 -14.651 -18.578 -13.484 -13.184 -2.633 0.653 -6.663 -14.328 2.798 -9.192 -13.342 1.456 -13.855 -3.494 2.146 -13.666 -4.523 -10.300 ML 34 32 6 37 6 18 35 1174 2519 -13.114 -13.460 -0.007 -7.869 -13.310 -10.840 -6.468 -0.408 -7.241 1.691 MR 35 32 6 37 6 17 33 1171 2517 -13.534 -12.263 -8.172 -12.241 -0.007 -10.455 0.667 -1.249 0.977 -5.424 D 36 32 6 37 6 12 27 1166 2511 -16.796 -15.494 -6.021 -11.974 -11.991 -0.023 IL 37 37 5 37 6 16 34 1174 2519 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 18 35 1174 2519 -7.751 -0.010 -11.262 -9.430 -10.536 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 257 c g - - MP 39 38 6 43 6 19 34 1173 2518 -19.199 -19.138 -0.001 -11.219 -18.195 -18.590 -13.506 -13.205 -13.505 -0.178 1.340 -14.346 2.472 -13.024 -13.364 1.598 -13.876 -1.226 0.121 -5.456 1.307 -12.083 ML 40 38 6 43 6 15 32 1171 2516 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 16 32 1170 2516 -13.541 -12.270 -6.298 -12.248 -0.020 -10.462 0.639 -5.333 0.984 -1.186 D 42 38 6 43 6 12 27 1166 2511 -16.774 -15.473 -11.270 -11.952 -11.969 -0.001 IL 43 43 5 43 6 16 33 1172 2517 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 16 33 1172 2517 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 256 U A - - MP 45 44 6 49 6 17 32 1171 2516 -6.264 -19.138 -0.019 -17.914 -18.194 -18.589 -13.591 -13.296 -8.935 -0.248 -12.435 -14.407 0.650 -13.094 -13.443 1.777 -13.949 -10.868 3.038 -3.495 0.858 -4.407 ML 46 44 6 49 6 16 31 1170 2515 -9.063 -9.409 -0.128 -3.818 -9.259 -6.788 -2.900 -4.279 1.901 -3.637 MR 47 44 6 49 6 16 31 1169 2515 -13.527 -12.256 -1.103 -12.235 -0.907 -10.448 1.238 -5.585 0.250 -1.211 D 48 44 6 49 6 12 27 1166 2511 -16.774 -15.473 -11.270 -11.952 -11.969 -0.001 IL 49 49 5 49 6 16 32 1170 2516 -1.499 -10.603 -0.633 -12.258 -13.034 -12.694 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 16 31 1170 2515 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 255 g c - - MP 51 50 6 55 4 15 30 1169 2514 -18.434 -18.641 -0.000 -17.055 -13.181 -6.586 -13.000 1.896 -14.132 -13.598 -3.359 -13.689 -4.995 2.914 -3.400 1.833 -0.090 -12.856 -8.586 -11.965 ML 52 50 6 55 4 14 29 1168 2513 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 14 29 1168 2513 -10.655 -9.684 -0.024 -6.117 -6.818 1.988 -7.273 -5.890 D 54 50 6 55 4 12 27 1166 2511 -12.197 -11.878 -3.680 -0.118 IL 55 55 5 55 4 14 30 1169 2514 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 14 30 1168 2514 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - - - ML 57 56 6 59 3 13 28 1167 2512 -19.350 -0.000 -18.004 -16.455 -15.181 -4.656 1.986 D 58 56 6 59 3 12 27 1166 2511 -14.195 -0.004 -8.586 IL 59 59 3 59 3 13 29 1167 2513 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 60 59 3 62 2 12 27 1166 2511 -20.021 -0.000 1.921 -7.106 -3.681 -2.978 D 61 59 3 62 2 11 26 1165 2510 -8.445 -0.004 IL 62 62 3 62 2 12 28 1166 2512 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 11 26 1165 2510 [ BEGR 47 ] - - - - - - S 64 63 1 65 3 1 6 1129 2475 -19.365 -0.000 -18.019 IL 65 65 2 65 3 1 6 1129 2475 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 67 - A - - - ML 66 65 2 68 3 1 6 1129 2475 -19.365 -0.089 -4.059 1.649 -2.935 -1.419 -1.476 D 67 65 2 68 3 0 4 1108 2453 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 1129 2475 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 68 - G - - - ML 69 68 3 71 3 1 6 1130 2475 -1.744 -0.512 -14.053 -1.695 -7.230 1.857 -3.986 D 70 68 3 71 3 0 4 1095 2440 -16.726 -0.001 -11.117 IL 71 71 3 71 3 1 6 1176 2521 -0.030 -5.723 -9.535 0.000 0.000 0.000 0.000 [ MATL 50 ] 151 - G - - - ML 72 71 3 74 3 1 4 1095 2440 -19.338 -0.453 -1.892 -1.403 -7.437 1.840 -4.834 D 73 71 3 74 3 0 3 1092 2437 -15.046 -10.559 -0.001 IL 74 74 3 74 3 1 5 1096 2441 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 152 - U - - - ML 75 74 3 77 3 1 6 1094 2439 -18.885 -0.000 -17.539 -3.985 -3.475 -2.846 1.891 D 76 74 3 77 3 0 3 1092 2437 -18.963 -0.028 -5.695 IL 77 77 3 77 3 1 3 1090 2435 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 153 - C - - - ML 78 77 3 80 5 1 5 1093 2438 -18.290 -0.003 -18.105 -8.982 -19.209 -5.842 1.715 -6.342 -0.542 D 79 77 3 80 5 0 1 997 2343 -11.236 -7.079 -10.497 -0.016 -8.784 IL 80 80 3 80 5 1 1 1090 2435 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 154 254 g c - - MP 81 80 3 85 6 2 6 1092 2438 -2.640 -19.154 -0.252 -17.931 -18.211 -18.606 -13.180 -8.314 -12.999 0.615 -14.112 -9.599 0.177 -13.683 -10.256 2.850 -9.842 1.787 1.382 -12.854 -4.009 -9.112 ML 82 80 3 85 6 1 1 1078 2424 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 996 2341 -13.573 -12.302 -8.210 -12.280 -0.448 -1.926 1.547 -7.067 0.088 -6.981 D 84 80 3 85 6 0 0 1016 2361 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 4 1091 2436 -13.343 -13.606 -0.000 -15.261 -16.037 -15.697 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 1085 2430 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 156 253 g c - - MP 87 86 6 91 6 2 5 1090 2435 -3.997 -19.154 -0.093 -17.931 -18.211 -18.606 -3.143 -8.927 -13.422 -0.064 -5.769 -10.433 2.424 -7.740 -5.205 2.450 -13.818 -2.778 1.707 -13.588 -3.507 -0.876 ML 88 86 6 91 6 1 1 1073 2418 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 994 2339 -13.133 -11.862 -7.771 -11.841 -0.009 -10.054 -6.520 -8.284 1.993 -7.280 D 90 86 6 91 6 0 0 993 2338 -14.295 -12.993 -8.790 -9.472 -0.036 -5.565 IL 91 91 5 91 6 1 4 1089 2434 -11.987 -12.250 -0.001 -13.905 -14.681 -14.342 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 1083 2428 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 158 252 a u - - MP 93 92 6 97 6 2 5 1088 2433 -19.215 -19.154 -0.000 -17.931 -18.211 -18.606 -13.510 -5.070 -13.509 2.565 -8.926 -14.352 1.400 -13.031 -13.369 0.465 -13.882 -1.535 2.029 -10.385 -0.112 -0.557 ML 94 92 6 97 6 1 1 1063 2408 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 992 2337 -13.573 -12.302 -1.911 -12.280 -0.448 -10.493 0.034 1.565 -7.727 -6.330 D 96 92 6 97 6 0 0 1006 2352 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 1080 2425 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 1079 2424 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 159 251 G C - - MP 99 98 6 103 6 2 5 1086 2431 -19.218 -7.472 -0.008 -17.934 -18.214 -18.609 -16.267 -9.339 -16.928 0.677 -18.024 -15.223 -3.536 -17.011 -15.062 3.757 -15.353 -0.549 -3.225 -15.483 -14.995 -15.671 ML 100 98 6 103 6 1 1 1044 2389 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 738 2083 -13.133 -11.862 -7.771 -11.841 -0.009 -10.054 -7.384 1.992 -7.854 -6.415 D 102 98 6 103 6 0 0 989 2335 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 1078 2423 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 1085 2430 -7.659 -0.011 -11.170 -9.338 -10.444 0.000 0.000 0.000 0.000 [ MATP 57 ] 160 249 G C - - MP 105 104 6 109 4 2 3 1084 2429 -7.505 -2.023 -0.418 -17.069 -17.181 -13.773 -19.665 -11.262 -18.797 -14.926 -13.077 -19.050 -15.144 3.987 -15.333 -2.830 -13.446 -15.397 -15.534 -18.847 ML 106 104 6 109 4 1 1 986 2331 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 670 2015 -11.157 -10.186 -8.053 -0.007 -6.520 -8.284 1.993 -7.280 D 108 104 6 109 4 0 0 969 2315 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 755 2100 -7.830 -8.514 -0.011 -10.999 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 1184 2530 -0.020 -6.278 -10.452 0.000 0.000 0.000 0.000 [ MATL 58 ] 162 - U - - - ML 111 110 6 113 3 1 4 12 30 -19.338 -0.000 -17.992 -5.329 -6.900 -14.337 1.988 D 112 110 6 113 3 0 0 13 31 -15.013 -10.526 -0.001 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 163 - U - - - ML 114 113 3 116 3 1 3 11 29 -19.338 -0.000 -17.992 -7.260 -7.211 -4.946 1.983 D 115 113 3 116 3 0 0 12 30 -15.013 -10.526 -0.001 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 164 - C - - - ML 117 116 3 119 3 1 2 10 28 -19.338 -0.000 -17.992 -8.380 1.982 -5.484 -5.294 D 118 116 3 119 3 0 0 11 29 -15.013 -10.526 -0.001 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 165 - G - - - ML 120 119 3 122 3 1 1 8 27 -19.338 -0.000 -17.992 0.707 -8.378 1.226 -5.294 D 121 119 3 122 3 0 0 9 28 -15.013 -0.002 -9.405 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 166 - A - - - ML 123 122 3 125 3 1 1 7 25 -19.365 -0.000 -18.019 1.990 -8.431 -8.425 -5.496 D 124 122 3 125 3 0 0 15 33 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 167 - G - - - ML 126 125 3 128 3 1 1 5 24 -19.365 -0.000 -18.019 -0.664 -1.491 1.186 -0.439 D 127 125 3 128 3 0 0 13 32 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 168 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -3.707 -1.872 -6.929 1.865 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 2 9 59 89 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 188 2 9 59 89 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 1 4 30 69 -0.006 -17.356 -7.881 -17.403 [ MATP 18 ] 12 37 G C - - MP 136 135 1 140 6 3 6 30 69 -6.749 -19.159 -0.028 -6.666 -15.638 -18.610 -14.208 -6.284 -14.112 -0.164 -15.194 -7.603 -0.552 -14.778 -14.121 3.804 -14.351 -1.679 -3.290 -5.221 -12.251 -13.080 ML 137 135 1 140 6 1 3 32 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 2 4 30 68 -12.778 -11.507 -0.043 -11.485 -5.197 -9.699 1.011 -5.074 -5.567 0.952 D 139 135 1 140 6 0 2 35 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 2 5 29 68 -9.251 -9.514 -0.006 -11.170 -11.946 -11.606 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 3 32 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 36 C G - - MP 142 141 6 146 6 3 5 28 67 -19.211 -19.151 -0.004 -17.927 -8.397 -18.602 -16.270 -16.550 -9.072 -3.164 -13.938 -15.732 3.890 -3.488 -15.691 -12.759 -2.582 -14.950 -0.312 -16.104 -11.641 -14.493 ML 143 141 6 146 6 2 5 30 68 -13.439 -13.785 -8.499 -0.005 -13.635 -11.164 -7.301 -9.074 1.996 -8.063 MR 144 141 6 146 6 1 3 34 72 -8.095 -6.824 -0.763 -6.802 -1.481 -5.016 -0.655 -1.701 1.372 -1.090 D 145 141 6 146 6 0 2 35 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 3 32 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 3 32 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 35 U A - - MP 148 147 6 152 6 3 6 26 64 -19.207 -19.147 -0.000 -17.923 -12.441 -18.598 -16.263 -6.343 -15.583 -4.281 -6.417 -15.729 -0.878 -14.850 -2.578 -3.941 -15.807 -14.924 3.921 -16.101 -7.796 -14.488 ML 149 147 6 152 6 2 4 28 67 -13.439 -13.785 -8.499 -0.005 -13.635 -11.164 -7.301 -9.074 1.996 -8.063 MR 150 147 6 152 6 1 3 35 73 -12.269 -10.998 -6.906 -10.976 -5.655 -0.043 1.990 -7.148 -6.474 -6.640 D 151 147 6 152 6 0 2 36 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 3 37 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 3 38 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 34 C G - - MP 154 153 6 158 4 3 6 19 55 -18.437 -18.644 -0.000 -17.058 -0.920 -16.548 -15.583 -12.784 -13.933 -15.727 3.903 -14.849 -2.460 -12.756 -15.807 -14.952 -2.054 -16.100 -3.545 -14.489 ML 155 153 6 158 4 1 3 27 66 -10.525 -10.708 -7.274 -0.011 -7.301 -9.074 1.996 -8.063 MR 156 153 6 158 4 1 3 42 80 -0.547 -5.772 -3.639 -2.205 -1.601 -2.825 1.728 -2.212 D 157 153 6 158 4 0 2 27 65 -10.285 -9.967 -7.982 -0.008 IL 158 158 5 158 4 1 3 42 80 -0.689 -5.308 -4.056 -1.764 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 3 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - A - - - ML 160 159 6 162 3 2 5 17 33 -19.346 -0.000 -18.000 1.981 -4.469 -7.020 -14.476 D 161 159 6 162 3 0 2 15 34 -14.515 -10.028 -0.001 IL 162 162 3 162 3 1 3 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - - - ML 163 162 3 165 3 1 4 16 32 -19.346 -0.002 -9.710 -0.621 -7.140 1.676 -2.771 D 164 162 3 165 3 0 2 14 33 -14.515 -6.118 -0.021 IL 165 165 3 165 3 1 3 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - U - - - ML 166 165 3 168 3 1 3 15 30 -19.345 -0.273 -2.536 -3.811 -0.152 -0.636 1.254 D 167 165 3 168 3 0 2 13 31 -14.623 -2.237 -0.344 IL 168 168 3 168 3 1 3 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - - - ML 169 168 3 171 3 1 3 14 29 -1.335 -0.729 -17.731 -3.233 -0.606 -0.380 1.303 D 170 168 3 171 3 0 2 12 28 -18.318 -0.000 -12.709 IL 171 171 3 171 3 1 3 13 29 -5.377 -0.035 -15.171 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 172 171 3 174 3 1 3 12 28 -19.365 -0.000 -18.019 -4.442 -15.613 1.959 -3.892 D 173 171 3 174 3 0 1 16 35 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 2 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 175 174 3 177 3 1 2 11 26 -19.365 -0.244 -2.686 -6.912 -15.660 1.994 -7.002 D 176 174 3 177 3 0 1 15 34 -6.174 -1.687 -0.566 IL 177 177 3 177 3 1 2 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - U - - - ML 178 177 3 180 3 1 1 10 25 -3.654 -0.712 -1.689 -1.040 -0.802 -3.871 1.522 D 179 177 3 180 3 0 1 6 24 -18.098 -0.000 -12.489 IL 180 180 3 180 3 1 2 10 25 -2.965 -0.198 -13.060 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - U - - - ML 181 180 3 183 3 1 1 5 24 -18.926 -0.000 -17.581 -0.134 -1.566 -3.622 1.417 D 182 180 3 183 3 0 0 4 23 -18.851 -0.000 -13.243 IL 183 183 3 183 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 184 183 3 186 2 1 1 1 1 * 0.000 1.971 -6.460 -4.071 -6.803 D 185 183 3 186 2 0 0 0 0 * 0.000 IL 186 186 3 186 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 187 186 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 188 134 1 189 3 0 0 41 70 -19.365 -0.007 -7.686 IL 189 189 2 189 3 1 1 43 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - G - - - ML 190 189 2 192 5 1 3 41 70 -18.291 -0.000 -18.106 -18.318 -19.210 -0.011 -4.688 1.564 -6.454 D 191 189 2 192 5 0 0 39 67 -11.074 -1.269 -10.335 -8.710 -0.782 IL 192 192 3 192 5 1 1 42 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 66 C G - - MP 193 192 3 197 6 2 2 40 69 -19.222 -19.161 -0.000 -17.937 -18.217 -18.612 -2.844 -8.013 -6.849 0.135 -2.931 -12.049 3.279 -6.605 -3.954 -2.481 -13.516 -0.434 1.902 -8.990 -2.736 -5.308 ML 194 192 3 197 6 1 1 39 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 3 197 6 1 1 39 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 3 197 6 0 0 30 58 -14.821 -13.519 -9.316 -9.998 -10.016 -0.005 IL 197 197 5 197 6 1 1 40 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 40 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 40 65 A U - - MP 199 198 6 203 6 2 2 38 67 -19.222 -19.161 -0.000 -17.937 -18.217 -18.612 -8.743 -13.219 -0.632 3.077 -11.447 -12.159 1.450 -11.751 -13.376 -1.011 -13.890 -1.866 1.747 -13.701 -4.860 -5.552 ML 200 198 6 203 6 1 1 37 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 37 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 28 57 -14.821 -13.519 -9.316 -9.998 -10.016 -0.005 IL 203 203 5 203 6 1 1 38 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 38 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 41 64 C G - - MP 205 204 6 209 6 2 2 36 65 -19.222 -19.161 -0.223 -3.511 -4.167 -14.152 -11.927 -11.804 -6.548 0.239 -12.408 -4.987 3.072 -13.050 -13.380 2.060 -13.887 -6.319 -0.814 -13.679 0.694 -12.094 ML 206 204 6 209 6 1 1 36 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 6 1 1 37 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 6 209 6 0 0 27 55 -14.821 -13.519 -9.316 -9.998 -10.016 -0.005 IL 209 209 5 209 6 1 1 36 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 36 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 42 63 G C - - MP 211 210 6 215 6 2 2 34 62 -2.084 -5.802 -0.422 -17.714 -17.994 -18.389 -13.029 -10.419 -12.877 -0.542 -8.536 -11.773 2.453 -11.711 -13.208 3.138 -13.508 -3.063 -2.573 -10.888 -0.438 -11.775 ML 212 210 6 215 6 1 1 35 63 -0.002 -16.934 -10.682 -11.343 -16.784 -14.313 1.999 -11.790 -11.043 -9.280 MR 213 210 6 215 6 1 1 36 65 -16.467 -0.002 -11.104 -15.174 -10.308 -13.387 1.999 -11.156 -10.396 -10.491 D 214 210 6 215 6 0 0 21 50 -14.846 -13.545 -5.700 -10.024 -10.041 -0.031 IL 215 215 5 215 6 1 1 34 62 -0.957 -15.509 -1.044 -17.164 -17.940 -17.601 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 35 64 -0.909 -1.097 -15.891 -14.059 -15.165 0.000 0.000 0.000 0.000 [ MATP 38 ] 49 59 c g - - MP 217 216 6 221 4 2 2 15 33 -18.451 -18.658 -0.078 -4.245 -13.229 -1.342 -13.067 0.752 -11.991 -1.012 2.564 -11.949 -13.433 2.305 -13.716 -1.842 -2.604 -12.953 -1.506 0.827 ML 218 216 6 221 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 219 216 6 221 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 220 216 6 221 4 0 0 18 37 -10.244 -9.926 -7.941 -0.009 IL 221 221 5 221 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - u - - - ML 223 222 6 225 3 1 1 13 30 -19.282 -0.000 -17.937 -13.153 0.877 -2.064 0.944 D 224 222 6 225 3 0 0 12 30 -16.611 -0.077 -4.268 IL 225 225 3 225 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 51 - U - - - ML 226 225 3 228 3 1 1 12 29 -19.361 -0.000 -18.015 -16.415 -2.324 -17.817 1.926 D 227 225 3 228 3 0 0 14 32 -12.349 -7.862 -0.006 IL 228 228 3 228 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 52 - g - - - ML 229 228 3 231 3 1 1 11 28 -19.361 -0.000 -18.015 -0.266 -0.263 0.683 -0.456 D 230 228 3 231 3 0 0 12 31 -12.349 -7.862 -0.006 IL 231 231 3 231 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 53 - u - - - ML 232 231 3 234 3 1 1 10 27 -2.552 -0.321 -5.124 0.271 -0.709 -0.266 0.433 D 233 231 3 234 3 0 0 8 26 -12.349 -7.862 -0.006 IL 234 234 3 234 3 1 1 10 26 -3.850 -0.104 -14.306 0.000 0.000 0.000 0.000 [ MATL 43 ] 56 - u - - - ML 235 234 3 237 3 1 1 7 25 -19.319 -0.000 -17.973 0.336 -0.700 -0.700 0.591 D 236 234 3 237 3 0 0 8 26 -15.794 -3.459 -0.138 IL 237 237 3 237 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 57 - A - - - ML 238 237 3 240 3 1 1 5 24 -19.323 -0.000 -17.977 1.923 -14.889 -2.262 -14.453 D 239 237 3 240 3 0 0 7 25 -15.657 -11.170 -0.001 IL 240 240 3 240 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - A - - - ML 241 240 3 243 2 1 1 1 1 * 0.000 1.529 -0.029 -6.892 -2.986 D 242 240 3 243 2 0 0 0 0 * 0.000 IL 243 243 3 243 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 244 243 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Ile ACC bact-Ile-r2-022416 LENG 77 MAXL 1148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 16:37:42 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ile-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ile-r2-022416.sto NSEQ 10250 EFFN 10.004878 CKSUM 341964354 STATS LOCAL MSV -8.5161 0.71884 STATS LOCAL VITERBI -9.5568 0.71884 STATS LOCAL FORWARD -3.5652 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45094 1.40274 1.26961 1.43219 1.38629 1.38629 1.38629 1.38629 0.05051 4.88103 3.17807 1.46634 0.26236 0.00000 * 1 1.59895 2.54839 0.44764 2.51888 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01584 4.84636 4.84636 1.46634 0.26236 0.31063 1.32044 2 2.18424 1.91395 0.45396 2.25541 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01782 4.88149 4.59714 1.46634 0.26236 1.09861 0.40547 3 1.93649 2.10471 0.45457 2.31076 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01534 4.87900 4.87721 1.46634 0.26236 1.19202 0.36184 4 1.99674 0.98704 1.64074 1.21164 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01535 4.87909 4.87524 1.46634 0.26236 1.19997 0.35840 5 2.09780 0.93854 1.54924 1.29586 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01532 4.87920 4.87920 1.46634 0.26236 1.19549 0.36033 6 2.17355 1.55860 1.53769 0.77453 6 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02639 3.99333 4.87926 0.86477 0.54671 1.19943 0.35863 7 1.50352 2.78256 0.47833 2.34384 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01528 4.88210 4.88210 1.46634 0.26236 0.92315 0.50628 8 3.50492 3.39488 3.70412 0.09235 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.01522 4.88604 4.88604 1.46634 0.26236 1.09861 0.40547 9 0.11414 3.66772 3.26830 3.11773 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.01868 4.89473 4.50777 1.46634 0.26236 1.09861 0.40547 10 2.10243 2.69308 0.28492 2.84568 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02307 4.18142 4.88937 0.79947 0.59705 0.86352 0.54762 11 3.62701 0.16677 3.37567 2.37710 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01758 4.89465 4.61131 1.46634 0.26236 1.09376 0.40790 12 4.11959 2.80961 3.74323 0.10554 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01512 4.89226 4.89226 1.46634 0.26236 1.20279 0.35718 13 3.31617 0.14182 3.47598 2.73339 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02365 4.87298 4.15281 1.44187 0.26982 1.20279 0.35718 14 0.04972 4.05290 4.08661 4.24474 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.88401 4.86473 1.46634 0.26236 1.48708 0.25623 15 1.78186 3.38933 0.31232 2.71512 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01626 4.88386 4.76068 1.46634 0.26236 1.47219 0.26062 16 2.21107 1.52656 1.90100 0.64681 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.17296 4.88302 1.88881 1.46634 0.26236 1.23156 0.34508 17 2.04424 1.72969 1.77591 0.64655 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.41138 1.11338 4.73083 0.07545 2.62177 0.09017 2.45081 18 3.56023 4.70522 0.06247 3.76885 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01509 4.89473 4.89473 1.46634 0.26236 1.09861 0.40547 19 4.18671 5.31345 0.03003 4.66035 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.15639 4.89473 1.98568 1.46634 0.26236 1.09861 0.40547 20 1.87365 1.83628 2.77321 0.47070 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.40518 2.61695 1.34661 0.32396 1.28474 0.10351 2.31941 21 1.46826 2.01871 2.51604 0.58686 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01935 4.64772 4.64772 1.46634 0.26236 0.06405 2.77999 22 0.05856 4.23108 3.63682 4.13477 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02595 4.89473 4.01000 1.46634 0.26236 1.09861 0.40547 23 2.63338 3.87520 0.12530 3.68168 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01525 4.88402 4.88402 1.46634 0.26236 1.20332 0.35695 24 0.11088 4.11868 2.67541 3.92147 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.01521 4.88650 4.88650 1.46634 0.26236 1.40971 0.28000 25 2.54609 3.80102 0.14532 3.36620 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.01521 4.88650 4.88650 1.46634 0.26236 0.67027 0.71656 26 3.07890 0.33643 2.55224 1.82159 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.01921 4.89473 4.46186 1.46634 0.26236 1.09861 0.40547 27 1.41950 3.32953 0.38653 3.14787 38 G - - , 1.38629 1.38629 1.38629 1.38629 0.01515 4.89066 4.89066 1.46634 0.26236 1.06292 0.42380 28 2.07898 0.78854 1.99000 1.25970 39 c - - < 1.38629 1.38629 1.38629 1.38629 0.01512 4.89234 4.89234 1.46634 0.26236 1.19943 0.35863 29 1.04252 1.46715 1.87515 1.33362 40 a - - < 1.38629 1.38629 1.38629 1.38629 0.01512 4.89234 4.89234 1.46634 0.26236 1.19943 0.35863 30 2.14730 0.87037 1.42153 1.50031 41 c - - < 1.38629 1.38629 1.38629 1.38629 0.06353 4.89234 2.91792 1.46634 0.26236 1.19943 0.35863 31 1.88696 1.35094 0.80320 1.95491 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.31424 1.34023 4.84470 0.74376 0.64497 0.27905 1.41266 32 1.68707 1.23784 1.19312 1.50663 49 g - - < 1.38629 1.38629 1.38629 1.38629 0.06086 4.89234 2.96546 1.46634 0.26236 1.19943 0.35863 33 2.54852 0.90385 2.56498 0.82126 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01582 4.84731 4.84731 1.46634 0.26236 0.29083 1.37691 34 3.63458 2.72333 4.14606 0.11415 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01512 4.89234 4.89234 1.46634 0.26236 1.19943 0.35863 35 1.39822 1.62229 1.13309 1.45466 52 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01512 4.89234 4.89234 1.46634 0.26236 1.19943 0.35863 36 1.19268 1.75987 1.61532 1.12179 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.20011 1.89775 3.45934 0.16048 1.90876 1.19943 0.35863 37 1.16995 1.75077 1.78085 1.05705 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01550 4.86810 4.86810 1.46634 0.26236 1.59699 0.22628 38 0.09348 4.18895 2.86688 4.06242 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01546 4.87055 4.87055 1.46634 0.26236 1.82314 0.17616 39 0.40431 1.60061 3.12324 2.44441 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01794 4.87055 4.59427 1.46634 0.26236 0.39013 1.13000 40 1.97450 1.22567 1.14739 1.38572 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.15979 2.70569 2.51509 0.83062 0.57231 1.19943 0.35863 41 2.16122 0.85204 1.19020 1.87008 63 c - - > 1.38629 1.38629 1.38629 1.38629 0.01633 4.81616 4.81616 1.46634 0.26236 0.19486 1.73132 42 1.95300 1.49411 0.70195 1.97988 64 g - - > 1.38629 1.38629 1.38629 1.38629 0.01512 4.89234 4.89234 1.46634 0.26236 1.19943 0.35863 43 1.48024 2.07260 1.27212 1.00424 65 u - - > 1.38629 1.38629 1.38629 1.38629 0.01512 4.89234 4.89234 1.46634 0.26236 1.19943 0.35863 44 1.37007 2.34464 0.72255 1.80473 66 g - - > 1.38629 1.38629 1.38629 1.38629 0.01512 4.89234 4.89234 1.46634 0.26236 0.92315 0.50628 45 0.37173 2.61295 2.21444 2.05630 67 A - - , 1.38629 1.38629 1.38629 1.38629 0.06731 4.89472 2.85405 1.46634 0.26236 1.09861 0.40547 46 2.38083 3.79122 0.16709 3.24843 68 G - - , 1.38629 1.38629 1.38629 1.38629 0.30458 1.36789 4.83758 3.88007 0.02087 0.23102 1.57854 47 2.28352 3.87908 0.16866 3.42305 151 G - - , 1.38629 1.38629 1.38629 1.38629 0.28958 4.89469 1.41085 1.46634 0.26236 1.10053 0.40451 48 2.78996 2.71755 2.99974 0.19512 152 U - - , 1.38629 1.38629 1.38629 1.38629 0.01980 4.62492 4.62492 1.46634 0.26236 0.07836 2.58539 49 3.10413 0.28467 3.74967 1.71843 153 C - - , 1.38629 1.38629 1.38629 1.38629 0.01683 4.89017 4.69199 1.46634 0.26236 1.28286 0.32468 50 1.85780 2.27410 0.53520 1.86082 154 G - - < 1.38629 1.38629 1.38629 1.38629 0.16134 1.95572 4.88853 0.10329 2.32142 1.34186 0.30294 51 2.02803 1.19057 1.22868 1.30314 156 c - - < 1.38629 1.38629 1.38629 1.38629 0.06973 2.81643 4.88852 0.23523 1.56249 1.34186 0.30294 52 1.31808 1.46872 1.73742 1.12038 158 u - - < 1.38629 1.38629 1.38629 1.38629 0.01518 4.88852 4.88852 1.46634 0.26236 1.14367 0.38367 53 2.06044 3.34549 0.22810 3.18665 159 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89017 4.89017 1.46634 0.26236 1.28286 0.32468 54 3.75650 4.83838 0.04037 4.79376 160 G - - < 1.38629 1.38629 1.38629 1.38629 0.03088 4.41344 4.00099 0.97524 0.47337 1.28286 0.32468 55 3.55244 3.52686 4.23170 0.07535 162 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01532 4.87934 4.87934 1.46634 0.26236 1.61742 0.22116 56 3.39842 3.29800 3.70030 0.09993 163 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01532 4.87934 4.87934 1.46634 0.26236 1.61742 0.22116 57 4.16238 0.05827 4.29003 3.59963 164 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01532 4.87934 4.87934 1.46634 0.26236 1.61742 0.22116 58 0.92786 3.58638 0.62420 3.18905 165 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01532 4.87934 4.87934 1.46634 0.26236 0.50554 0.92428 59 0.03494 4.68329 4.39360 4.36382 166 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01509 4.89473 4.89473 1.46634 0.26236 1.09861 0.40547 60 1.59946 2.14229 0.74996 1.56913 167 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01509 4.89473 4.89473 1.46634 0.26236 1.09861 0.40547 61 2.99129 2.48091 3.69689 0.17280 168 U - - _ 1.38629 1.38629 1.38629 1.38629 0.24767 1.55164 4.89474 4.27770 0.01397 1.09861 0.40547 62 4.80666 0.05666 4.64901 3.28762 249 C - - > 1.38629 1.38629 1.38629 1.38629 0.01985 4.40908 4.89473 0.96788 0.47785 1.09861 0.40547 63 3.39984 0.28744 3.17445 1.74511 251 C - - > 1.38629 1.38629 1.38629 1.38629 0.01509 4.89473 4.89473 1.46634 0.26236 1.09861 0.40547 64 1.38971 1.90995 1.25063 1.15062 252 u - - > 1.38629 1.38629 1.38629 1.38629 0.01675 4.89473 4.69654 1.46634 0.26236 1.09861 0.40547 65 1.48745 1.31894 1.09128 1.76697 253 g - - > 1.38629 1.38629 1.38629 1.38629 0.01511 4.89308 4.89308 1.46634 0.26236 0.97095 0.47598 66 1.98631 0.78858 2.12220 1.24292 254 c - - > 1.38629 1.38629 1.38629 1.38629 0.01523 4.88533 4.88533 1.46634 0.26236 1.09861 0.40547 67 2.51558 0.72932 2.56248 1.02211 255 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01558 4.88533 4.84080 1.46634 0.26236 1.09861 0.40547 68 0.99029 1.61434 1.22790 1.99067 256 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01523 4.88498 4.88498 1.46634 0.26236 1.06915 0.42053 69 1.42533 1.70161 0.86569 1.85520 257 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02712 4.37388 4.25777 0.94700 0.49087 1.09861 0.40547 70 1.33331 1.75062 0.89794 1.86226 259 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01719 4.87856 4.66280 1.46634 0.26236 1.19969 0.35852 71 2.50591 0.50028 1.98080 1.74823 260 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01537 4.87800 4.87490 1.46634 0.26236 1.37289 0.29219 72 2.40025 0.51574 1.82088 1.89471 261 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01534 4.87798 4.87798 1.46634 0.26236 0.83775 0.56684 73 2.36516 0.59355 2.35662 1.35108 262 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02032 4.37894 4.88336 0.95255 0.48736 0.96006 0.48268 74 0.31372 3.54551 1.58192 3.35698 264 A - - : 1.38629 1.38629 1.38629 1.38629 0.36073 4.69207 1.22532 1.46634 0.26236 1.09861 0.40547 75 3.94715 0.06937 4.45545 3.32157 265 C - - : 1.38629 1.38629 1.38629 1.38629 0.02596 4.35730 4.35730 1.46634 0.26236 3.52731 0.02982 76 3.94715 0.06937 4.45545 3.32157 266 C - - : 1.38629 1.38629 1.38629 1.38629 0.02596 4.35730 4.35730 1.46634 0.26236 3.52731 0.02982 77 0.05693 4.19025 3.83694 3.98264 267 A - - : 1.38629 1.38629 1.38629 1.38629 0.01306 4.34441 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Leu ACC bact-Leu-r2-022416 STATES 274 NODES 75 CLEN 85 W 1380 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 16:58:48 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Leu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Leu-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Leu-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Leu-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 23606 EFFN 23606.000000 CKSUM 2560531045 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4006 0.71877 ECMLC 0.56958 -9.41244 1.54858 1600000 617385 0.001944 ECMGC 0.32864 -28.15459 -15.51828 1600000 25444 0.015721 ECMLI 0.51321 -10.15569 1.85995 1600000 571850 0.002098 ECMGI 0.35159 -24.61694 -12.94004 1600000 24270 0.016481 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 1380 2988 -19.453 -20.698 -0.754 -1.297 IL 1 1 2 1 4 18 39 1385 2993 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 40 1385 2993 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 288 - A - - MR 3 2 3 5 3 21 40 1384 2992 -20.107 -0.000 -18.425 2.000 -15.731 -15.016 -15.061 D 4 2 3 5 3 15 35 1381 2989 -20.658 -15.836 -0.000 IR 5 5 3 5 3 19 40 1384 2992 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 287 - C - - MR 6 5 3 8 3 20 39 1383 2991 -20.107 -0.000 -18.425 -16.956 2.000 -18.311 -14.955 D 7 5 3 8 3 15 35 1381 2989 -20.658 -15.836 -0.000 IR 8 8 3 8 3 19 39 1383 2991 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 286 - C - - MR 9 8 3 11 3 19 38 1382 2990 -20.107 -0.000 -18.425 -16.956 2.000 -18.311 -14.955 D 10 8 3 11 3 15 35 1381 2989 -20.658 -0.010 -7.188 IR 11 11 3 11 3 13 33 1382 2990 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 285 - A - - MR 12 11 3 14 5 18 37 1381 2989 -7.001 -0.121 -19.312 -3.781 -20.416 1.824 -2.899 -2.419 -2.850 D 13 11 3 14 5 10 27 1371 2979 -11.608 -6.963 -9.234 -10.665 -0.015 IR 14 14 3 14 5 19 40 1381 2989 -9.311 -0.004 -12.822 -10.990 -12.096 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 283 G C - - MP 15 14 3 19 6 21 39 1380 2988 -20.316 -20.255 -0.000 -19.032 -19.311 -19.706 -14.313 -12.955 -14.131 -1.104 -5.124 -14.725 -0.708 -10.547 -14.566 3.698 -11.375 0.461 -0.969 -13.988 -5.252 -13.095 ML 16 14 3 19 6 13 32 1378 2986 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 15 32 1375 2983 -18.055 -16.784 -2.485 -16.762 -0.284 -14.976 -5.688 1.977 -11.257 -4.550 D 18 14 3 19 6 10 27 1371 2979 -15.971 -14.669 -10.466 -11.148 -11.166 -0.002 IL 19 19 5 19 6 14 33 1379 2987 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 14 34 1379 2987 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 282 C G - - MP 21 20 6 25 6 19 37 1378 2986 -20.336 -20.275 -0.040 -5.961 -6.463 -19.726 -5.905 -14.332 -2.379 -0.259 -5.564 -15.477 3.473 -14.154 -14.493 1.424 -2.899 -2.266 -1.151 -14.816 -1.481 -13.212 ML 22 20 6 25 6 13 33 1377 2984 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 14 31 1373 2981 -17.771 -16.500 -12.409 -16.479 -0.000 -14.692 -6.998 -6.442 1.993 -11.772 D 24 20 6 25 6 10 27 1371 2979 -15.971 -14.669 -10.466 -11.148 -11.166 -0.002 IL 25 25 5 25 6 14 33 1377 2985 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 14 33 1377 2985 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 281 c g - - MP 27 26 6 31 6 18 35 1376 2984 -6.699 -20.235 -0.024 -12.337 -7.183 -19.686 -14.541 -10.377 -11.529 1.106 -13.613 -15.300 2.913 -8.455 -14.461 2.468 -11.445 -9.168 -0.432 -7.102 -5.069 -13.152 ML 28 26 6 31 6 18 34 1375 2983 -15.253 -15.599 -0.002 -10.008 -15.449 -12.978 -8.746 1.950 -2.936 -8.251 MR 29 26 6 31 6 13 30 1372 2980 -18.008 -16.737 -11.133 -16.715 -0.001 -14.929 -0.917 -0.608 1.488 -6.937 D 30 26 6 31 6 10 27 1371 2979 -15.971 -14.669 -10.466 -11.148 -11.166 -0.002 IL 31 31 5 31 6 16 33 1374 2982 -1.002 -11.629 -9.547 -1.003 -14.061 -13.721 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 14 33 1375 2983 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 280 G C - - MP 33 32 6 37 6 17 33 1374 2982 -20.296 -20.235 -0.000 -14.305 -19.291 -19.686 -14.267 -7.205 -14.087 0.629 -15.185 -14.683 1.930 -14.766 -14.520 3.282 -14.768 -3.418 -0.897 -2.040 -4.827 -13.050 ML 34 32 6 37 6 15 31 1372 2980 -14.505 -14.851 -5.733 -0.028 -14.701 -12.230 1.998 -9.792 -9.027 -9.136 MR 35 32 6 37 6 12 29 1371 2979 -18.131 -16.860 -5.990 -16.838 -0.142 -3.679 -1.117 -0.614 0.974 -0.119 D 36 32 6 37 6 10 27 1371 2979 -15.971 -14.669 -1.504 -11.148 -11.166 -0.629 IL 37 37 5 37 6 13 31 1374 2982 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 13 31 1373 2981 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 279 g c - - MP 39 38 6 43 6 15 31 1372 2980 -20.299 -5.977 -0.023 -19.015 -12.156 -19.690 -9.882 -0.127 -9.981 2.428 -8.186 -5.419 0.699 -5.888 -14.483 2.431 -14.741 -0.028 0.206 -11.920 -1.480 -2.751 ML 40 38 6 43 6 14 30 1371 2979 -14.487 -14.833 -0.003 -9.242 -14.683 -12.212 1.991 -9.520 -5.956 -7.361 MR 41 38 6 43 6 11 28 1370 2978 -17.989 -2.402 -3.698 -16.696 -0.447 -14.910 -8.633 1.293 -0.908 0.020 D 42 38 6 43 6 9 27 1370 2977 -17.447 -16.145 -0.382 -12.625 -12.642 -2.106 IL 43 43 5 43 6 12 29 1372 2979 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 14 31 1372 2980 -2.056 -0.397 -15.038 -13.205 -14.311 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 276 a u - - MP 45 44 6 49 6 13 29 1370 2978 -4.985 -20.290 -0.046 -19.066 -19.346 -19.741 -4.502 -3.334 -12.591 2.217 -8.629 -2.790 1.454 -12.938 -11.699 2.149 -11.716 -1.455 1.351 -2.388 -1.082 -1.708 ML 46 44 6 49 6 11 28 1369 2977 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 10 27 1369 2977 -17.548 -16.277 -2.833 -16.256 -0.218 -14.469 -9.005 1.022 -1.371 0.661 D 48 44 6 49 6 8 25 1367 2975 -15.345 -14.044 -9.841 -10.523 -10.540 -0.004 IL 49 49 5 49 6 12 29 1370 2978 -1.294 -3.364 -1.015 -14.808 -15.584 -15.244 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 12 28 1369 2977 -8.651 -0.006 -12.162 -10.330 -11.436 0.000 0.000 0.000 0.000 [ MATP 11 ] 12 274 G C - - MP 51 50 6 55 4 11 27 1368 2976 -19.591 -6.063 -0.032 -7.185 -14.324 -8.856 -14.143 1.348 -15.273 -4.196 -1.161 -14.833 -3.698 3.417 -11.290 -0.233 -0.956 -1.762 -7.536 -0.935 ML 52 50 6 55 4 10 26 1368 2976 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 9 26 1368 2976 -15.357 -14.386 -4.797 -0.053 -12.848 1.390 -14.108 0.464 D 54 50 6 55 4 8 25 1367 2975 -10.769 -10.450 -8.466 -0.006 IL 55 55 5 55 4 10 27 1368 2976 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 10 27 1369 2977 -0.730 -1.333 -13.168 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - U - - - ML 57 56 6 59 3 9 25 1366 2974 -20.493 -0.000 -19.147 -15.415 -6.447 -6.371 1.991 D 58 56 6 59 3 8 25 1367 2975 -1.094 -0.913 -12.077 IL 59 59 3 59 3 9 26 1368 2976 -0.641 -1.603 -5.070 0.000 0.000 0.000 0.000 [ MATL 13 ] 18 - G - - - ML 60 59 3 62 2 8 24 1365 2973 -21.221 -0.000 -0.168 -3.051 1.523 -3.108 D 61 59 3 62 2 7 23 1364 2972 -11.416 -0.001 IL 62 62 3 62 2 8 25 1366 2974 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 64 176 7 23 1364 2972 [ BEGL 15 ] - - - - - - S 64 63 1 65 1 0 1 1334 2942 0.000 [ BIF 16 ] - - - - - - B 65 64 1 66 119 0 1 1334 2942 [ BEGL 17 ] - - - - - - S 66 65 1 67 4 0 0 57 119 -0.175 -5.468 -9.040 -3.473 [ MATP 18 ] 19 54 G C - - MP 67 66 1 71 6 2 3 52 114 -20.253 -20.193 -0.025 -18.969 -5.887 -19.644 -7.614 -1.438 -4.810 -1.443 -15.166 -14.630 -1.494 -14.725 -14.473 3.798 -9.127 -2.022 -1.673 -11.760 -1.939 -2.860 ML 68 66 1 71 6 1 1 67 129 -15.837 -16.183 -5.335 -0.115 -4.272 -13.563 -9.672 -11.359 1.904 -1.962 MR 69 66 1 71 6 1 1 64 126 -12.821 -11.550 -7.459 -11.528 -0.011 -9.742 1.993 -7.715 -7.003 -7.147 D 70 66 1 71 6 0 0 62 124 -20.979 -19.677 -15.474 -16.156 -16.174 -0.000 IL 71 71 5 71 6 1 1 59 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 72 72 6 72 5 1 1 58 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 20 53 C G - - MP 73 72 6 77 6 2 2 45 107 -7.371 -20.169 -0.022 -18.945 -6.900 -10.849 -14.754 -14.469 -10.408 -2.719 -6.144 -9.025 3.281 -9.002 -14.597 -1.051 -15.093 -12.048 2.414 -14.925 -1.781 -7.653 ML 74 72 6 77 6 1 1 66 128 -15.723 -16.069 -3.527 -0.131 -15.919 -13.449 -10.174 -10.994 1.480 0.275 MR 75 72 6 77 6 1 1 63 125 -16.048 -14.777 -10.686 -14.755 -3.483 -0.136 -3.310 -7.426 -1.806 1.851 D 76 72 6 77 6 0 0 62 124 -20.979 -19.677 -15.474 -16.156 -10.492 -0.001 IL 77 77 5 77 6 1 1 43 105 -9.636 -9.899 -0.004 -11.554 -12.330 -11.991 0.000 0.000 0.000 0.000 IR 78 78 6 78 5 1 1 56 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 22 52 G C - - MP 79 78 6 83 6 2 3 39 101 -20.220 -5.504 -0.040 -11.670 -7.586 -19.610 -15.017 -6.398 -14.900 -2.629 -15.992 -7.426 -0.015 -15.572 -1.487 3.677 -9.012 -4.536 0.689 -5.186 -13.054 -13.867 ML 80 78 6 83 6 1 1 66 127 -15.593 -15.939 -10.654 -0.001 -15.789 -13.319 -9.390 -11.157 1.999 -10.145 MR 81 78 6 83 6 1 1 57 119 -15.041 -13.770 -0.288 -13.748 -8.882 -2.485 1.235 -1.873 -0.182 -1.022 D 82 78 6 83 6 0 0 62 124 -21.226 -19.924 -15.721 -16.404 -16.421 -0.000 IL 83 83 5 83 6 1 1 57 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 84 84 6 84 5 1 1 35 97 -10.596 -0.001 -14.107 -12.275 -13.381 0.000 0.000 0.000 0.000 [ MATP 21 ] 23 50 G A - - MP 85 84 6 89 4 2 2 28 82 -19.454 -19.661 -0.000 -13.173 1.906 -6.753 -7.382 -13.799 0.032 -16.745 0.271 -5.503 3.184 -8.982 -1.410 -7.632 -4.143 -4.147 -1.759 -3.255 ML 86 84 6 89 4 1 1 65 126 -0.003 -12.880 -9.446 -11.609 -10.082 1.979 -10.500 -4.164 MR 87 84 6 89 4 1 1 36 98 -12.079 -11.108 -8.975 -0.004 -7.376 -9.149 1.996 -8.137 D 88 84 6 89 4 0 0 62 124 -0.667 -16.351 -7.615 -1.454 IL 89 89 5 89 4 1 1 64 125 -0.429 -15.656 -1.958 -18.142 0.000 0.000 0.000 0.000 IR 90 90 6 90 3 1 1 29 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 32 - A - - - ML 91 90 6 93 3 1 2 26 48 -20.503 -0.000 -19.157 1.938 -6.894 -7.554 -2.687 D 92 90 6 93 3 0 0 23 45 -17.487 -3.168 -0.170 IL 93 93 3 93 3 1 1 28 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 33 - A - - - ML 94 93 3 96 3 1 1 25 47 -20.510 -0.008 -7.469 1.863 -4.624 -1.674 -7.047 D 95 93 3 96 3 0 0 22 44 -17.317 -6.114 -0.021 IL 96 96 3 96 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 34 - U - - - ML 97 96 3 99 3 1 1 24 46 -20.503 -0.370 -2.144 -3.027 -0.602 -5.159 1.674 D 98 96 3 99 3 0 0 22 44 -17.486 -12.999 -0.000 IL 99 99 3 99 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 35 - U - - - ML 100 99 3 102 3 1 1 23 46 -3.954 -0.096 -18.787 -1.379 -1.304 -13.794 1.683 D 101 99 3 102 3 0 0 22 44 -20.046 -0.305 -2.392 IL 102 102 3 102 3 1 1 24 47 -1.514 -0.634 -7.459 0.000 0.000 0.000 0.000 [ MATL 26 ] 39 - G - - - ML 103 102 3 105 3 1 1 22 44 -6.331 -0.018 -19.148 -5.860 -7.667 1.958 -3.436 D 104 102 3 105 3 0 0 18 40 -17.666 -2.632 -0.254 IL 105 105 3 105 3 1 1 25 48 -1.167 -0.851 -12.412 0.000 0.000 0.000 0.000 [ MATL 27 ] 42 - G - - - ML 106 105 3 108 3 1 1 20 42 -20.506 -0.000 -19.160 -6.519 -16.803 1.996 -15.775 D 107 105 3 108 3 0 0 15 37 -17.413 -4.571 -0.062 IL 108 108 3 108 3 1 1 22 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 43 - U - - - ML 109 108 3 111 3 1 1 19 41 -3.857 -0.251 -3.465 -1.992 0.413 -5.676 1.261 D 110 108 3 111 3 0 0 7 29 -17.351 -12.864 -0.000 IL 111 111 3 111 3 1 1 21 43 -1.236 -0.797 -14.843 0.000 0.000 0.000 0.000 [ MATL 29 ] 48 - A - - - ML 112 111 3 114 3 1 1 4 23 -20.372 -0.002 -9.692 1.783 -2.139 -3.700 -1.979 D 113 111 3 114 3 0 0 4 23 -19.011 -0.546 -1.667 IL 114 114 3 114 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 49 - G - - - ML 115 114 3 117 2 1 1 1 1 * 0.000 -0.251 -5.451 1.574 -2.648 D 116 114 3 117 2 0 0 0 0 * 0.000 IL 117 117 3 117 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 118 117 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 119 65 1 120 3 0 0 1318 2926 -20.568 -0.105 -3.831 IL 120 120 2 120 3 1 1 1322 2930 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 55 - G - - - ML 121 120 2 123 5 1 1 1306 2914 -5.516 -0.216 -3.721 -6.376 -5.100 0.707 -3.076 1.097 -3.179 D 122 120 2 123 5 0 0 1405 3013 -16.113 -2.744 -15.374 -0.476 -2.923 IL 123 123 3 123 5 1 1 1403 3011 -10.688 -8.775 -0.004 -14.199 -13.472 0.000 0.000 0.000 0.000 [ MATP 34 ] 57 210 C G - - MP 124 123 3 128 6 2 3 1268 2876 -5.570 -20.066 -0.081 -7.574 -5.146 -19.517 -14.420 -14.115 -7.745 1.431 -1.213 -8.668 3.340 -6.839 -14.280 0.763 -11.860 -1.501 -0.960 -3.036 -4.891 -7.187 ML 125 123 3 128 6 1 2 1402 3010 -17.844 -18.190 -12.904 -0.000 -18.039 -15.569 1.432 0.332 -10.913 -4.533 MR 126 123 3 128 6 1 2 1418 3026 -17.822 -16.551 -12.459 -16.529 -0.000 -14.742 -11.077 -12.831 2.000 -11.822 D 127 123 3 128 6 0 0 1404 3012 -19.671 -18.370 -14.167 -14.849 -14.866 -0.000 IL 128 128 5 128 6 1 1 1254 2862 -11.327 -0.003 -9.508 -13.245 -14.022 -13.682 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 1253 2861 -1.525 -0.616 -14.564 -12.732 -13.837 0.000 0.000 0.000 0.000 [ MATP 35 ] 59 207 c g - - MP 130 129 6 134 6 2 5 1251 2859 -20.078 -20.017 -0.000 -18.793 -19.073 -19.468 -14.373 -5.536 -14.372 1.424 -13.242 -15.216 2.463 -6.044 -14.232 1.013 -14.745 -3.715 2.461 -5.352 -3.875 -3.781 ML 131 129 6 134 6 1 1 1401 3009 -17.910 -18.256 -5.881 -0.400 -18.106 -2.150 -5.423 1.151 0.778 -4.582 MR 132 129 6 134 6 1 2 1417 3025 -18.277 -17.006 -12.915 -16.984 -0.000 -15.198 -11.534 -13.284 2.000 -12.275 D 133 129 6 134 6 0 0 1404 3012 -19.671 -18.370 -14.167 -14.849 -14.866 -0.000 IL 134 134 5 134 6 1 1 1299 2907 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 1296 2904 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 60 206 a u - - MP 136 135 6 140 6 2 3 1249 2857 -20.081 -5.312 -0.153 -5.276 -4.330 -19.471 -11.709 -9.866 -13.870 2.853 -10.257 -14.467 0.331 -10.397 -14.305 2.694 -14.553 -6.571 -0.006 -4.771 -12.064 -12.834 ML 137 135 6 140 6 1 1 1401 3009 -17.510 -17.856 -12.570 -0.274 -17.706 -2.534 -0.278 -0.534 -10.309 1.313 MR 138 135 6 140 6 1 2 1416 3024 -18.277 -17.006 -12.915 -16.984 -0.000 -15.198 -13.798 2.000 -14.812 -12.049 D 139 135 6 140 6 0 0 1404 3012 -20.339 -19.037 -14.834 -5.906 -15.534 -0.024 IL 140 140 5 140 6 1 1 1309 2917 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 1399 3007 -10.648 -8.736 -0.005 -12.327 -13.433 0.000 0.000 0.000 0.000 [ MATP 37 ] 61 204 G C - - MP 142 141 6 146 6 2 4 1169 2777 -8.253 -7.048 -0.042 -18.643 -5.822 -19.318 -13.955 -8.602 -13.776 -3.327 -14.888 -10.953 0.484 -14.457 -14.200 3.618 -14.448 0.455 -4.571 -13.630 -0.310 -9.326 ML 143 141 6 146 6 1 1 1399 3007 -3.502 -18.337 -13.052 -4.355 -3.159 -0.413 1.684 -2.675 -0.665 -11.595 MR 144 141 6 146 6 1 2 1415 3023 -18.824 -17.553 -13.462 -17.531 -0.000 -15.745 0.918 1.077 -15.794 -12.663 D 145 141 6 146 6 0 0 1404 3012 -20.600 -19.299 -15.096 -15.778 -15.795 -0.000 IL 146 146 5 146 6 1 1 1141 2749 -10.720 -0.338 -2.265 -12.638 -13.414 -13.074 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 1139 2747 -10.175 -0.002 -13.686 -11.854 -12.960 0.000 0.000 0.000 0.000 [ MATP 38 ] 63 202 A U - - MP 148 147 6 152 4 2 2 1138 2745 -19.150 -4.591 -0.076 -6.711 -14.202 -1.566 -6.474 3.067 -13.123 -15.023 2.220 -4.680 -14.077 0.597 -10.816 -3.515 -0.779 -14.356 -1.517 -4.619 ML 149 147 6 152 4 1 1 1395 3002 -10.726 -0.326 -2.318 -9.638 -7.853 1.685 -8.646 -0.362 MR 150 147 6 152 4 1 1 1414 3022 -17.104 -0.000 -14.000 -13.061 0.253 -11.711 1.323 -1.711 D 151 147 6 152 4 0 0 1404 3012 -17.086 -0.145 -14.783 -3.385 IL 152 152 5 152 4 1 1 1304 2912 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 153 153 6 153 3 1 1 1413 3021 -0.017 -8.144 -6.992 0.000 0.000 0.000 0.000 [ MATL 39 ] 64 - U - - - ML 154 153 6 156 3 1 2 67 157 -20.181 -0.000 -18.835 -6.204 0.836 -7.275 1.134 D 155 153 6 156 3 0 0 65 155 -19.901 -0.750 -1.303 IL 156 156 3 156 3 1 1 68 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 65 - U - - - ML 157 156 3 159 3 1 1 66 156 -20.423 -0.000 -19.077 -14.386 -3.623 -6.344 1.966 D 158 156 3 159 3 0 0 64 154 -18.598 -0.917 -1.088 IL 159 159 3 159 3 1 1 67 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 66 - g - - - ML 160 159 3 162 3 1 1 65 155 -20.502 -0.000 -19.156 -0.361 0.108 0.220 -0.031 D 161 159 3 162 3 0 0 63 153 -17.510 -1.851 -0.468 IL 162 162 3 162 3 1 1 66 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 67 - g - - - ML 163 162 3 165 3 1 1 64 154 -20.520 -0.000 -19.175 -0.066 0.074 0.193 -0.235 D 164 162 3 165 3 0 0 62 152 -17.042 -0.335 -2.272 IL 165 165 3 165 3 1 1 64 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 68 - a - - - ML 166 165 3 168 3 1 1 63 153 -5.248 -0.080 -5.185 0.294 -0.260 0.196 -0.336 D 167 165 3 168 3 0 0 30 120 -14.771 -10.284 -0.001 IL 168 168 3 168 3 1 1 80 170 -0.295 -5.492 -2.617 0.000 0.000 0.000 0.000 [ MATL 44 ] 75 - A - - - ML 169 168 3 171 3 1 1 4 23 -20.483 -0.000 -19.137 1.146 -15.414 0.833 -7.345 D 170 168 3 171 3 0 0 5 24 -17.856 -1.406 -0.683 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 76 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.231 -1.924 -1.885 0.161 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 47 ] - - - - - - S 176 63 1 177 3 0 9 60 106 -20.568 -0.006 -7.904 IL 177 177 2 177 3 1 10 62 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 211 - u - - - ML 178 177 2 180 2 1 9 60 106 -2.607 -0.259 -1.617 0.589 -1.363 0.833 D 179 177 2 180 2 0 8 59 105 -12.398 -0.000 IL 180 180 3 180 2 1 9 60 106 -4.640 -0.059 0.000 0.000 0.000 0.000 [ BIF 49 ] - - - - - - B 181 180 3 182 214 0 8 59 105 [ BEGL 50 ] - - - - - - S 182 181 1 183 4 0 0 30 50 -0.281 -15.290 -9.136 -2.512 [ MATP 51 ] 214 238 G C - - MP 183 182 1 187 6 2 2 30 50 -20.148 -20.087 -0.000 -18.863 -19.143 -19.538 -14.111 -9.709 -13.929 1.197 -15.060 -11.175 -1.399 -14.619 -14.368 3.506 -11.802 0.336 -1.142 -11.673 -2.032 -7.866 ML 184 182 1 187 6 1 1 29 49 -7.066 -7.412 -0.597 -1.821 -7.262 -4.792 -0.354 0.848 -1.083 -0.080 MR 185 182 1 187 6 1 1 28 48 -12.727 -11.456 -2.574 -11.434 -1.751 -0.905 0.437 -1.184 1.106 -4.210 D 186 182 1 187 6 0 0 19 39 -21.940 -20.638 -12.343 -17.117 -17.134 -0.000 IL 187 187 5 187 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 215 237 c g - - MP 189 188 6 193 6 2 2 28 48 -20.148 -20.087 -0.019 -7.804 -8.621 -7.409 -14.445 -14.144 -14.445 1.030 -7.812 -15.288 2.539 -0.026 -14.303 1.803 -9.900 -2.000 1.643 -14.627 -1.758 -13.022 ML 190 188 6 193 6 1 1 27 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 27 47 -11.015 -9.744 -0.061 -9.722 -4.856 -7.936 -4.705 -4.290 -5.520 1.959 D 192 188 6 193 6 0 0 15 35 -21.947 -20.645 -16.443 -17.125 -17.142 -0.000 IL 193 193 5 193 6 1 1 28 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 216 236 C G - - MP 195 194 6 199 4 2 2 26 46 -0.726 -3.535 -1.732 -6.980 -9.738 -10.998 -11.049 0.850 -4.668 -4.123 3.108 -9.160 -8.332 0.784 -5.288 -0.589 0.362 -12.025 0.826 -10.338 ML 196 194 6 199 4 1 1 25 45 -0.711 -4.256 -4.846 -1.727 -6.984 1.331 -8.078 0.559 MR 197 194 6 199 4 1 1 18 38 -10.983 -7.064 -0.023 -6.940 1.744 -1.019 -3.946 -3.425 D 198 194 6 199 4 0 0 15 34 -17.408 -8.924 -2.919 -0.208 IL 199 199 5 199 4 1 1 25 44 -1.408 -0.719 -6.017 -14.708 0.000 0.000 0.000 0.000 IR 200 200 6 200 3 1 1 21 40 -1.409 -0.707 -6.517 0.000 0.000 0.000 0.000 [ MATL 54 ] 224 - G - - - ML 201 200 6 203 3 1 1 14 27 -20.292 -0.000 -18.946 -2.148 -3.059 1.185 0.465 D 202 200 6 203 3 0 0 11 25 -19.464 -4.494 -0.066 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 225 - u - - - ML 204 203 3 206 3 1 1 13 26 -20.306 -0.000 -12.595 -0.242 -0.012 -2.446 0.985 D 205 203 3 206 3 0 0 8 24 -19.399 -9.398 -0.002 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 226 - A - - - ML 207 206 3 209 3 1 1 12 25 -3.472 -0.234 -4.072 1.380 -0.907 -1.355 -1.083 D 208 206 3 209 3 0 0 8 21 -10.468 -10.753 -0.002 IL 209 209 3 209 3 1 1 13 26 -2.047 -0.624 -3.198 0.000 0.000 0.000 0.000 [ MATL 57 ] 230 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.328 -0.769 -0.930 -1.406 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 [ BEGR 59 ] - - - - - - S 214 181 1 215 3 0 6 47 92 -20.568 -0.044 -5.063 IL 215 215 2 215 3 1 7 49 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 239 - G - - - ML 216 215 2 218 3 1 7 47 92 -2.020 -0.409 -19.178 -1.035 -0.846 1.412 -1.767 D 217 215 2 218 3 0 3 46 91 -9.341 -0.003 -11.316 IL 218 218 3 218 3 1 7 47 92 -5.666 -0.029 -15.927 0.000 0.000 0.000 0.000 [ MATL 61 ] 242 - U - - - ML 219 218 3 221 5 1 6 46 91 -19.501 -0.000 -19.316 -19.528 -20.420 -6.966 -2.541 -2.108 1.843 D 220 218 3 221 5 0 0 44 89 -4.959 -0.803 -4.221 -2.596 -2.508 IL 221 221 3 221 5 1 1 46 91 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 243 270 G C - - MP 222 221 3 226 6 2 5 45 90 -20.429 -6.456 -0.019 -19.145 -9.549 -14.817 -8.397 -6.850 -8.394 0.739 -15.341 -14.806 -0.188 -14.901 -14.649 3.288 -14.895 1.776 -4.755 -2.403 -8.681 -5.680 ML 223 221 3 226 6 1 1 43 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 224 221 3 226 6 1 1 42 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 225 221 3 226 6 0 0 40 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 226 226 5 226 6 1 1 44 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 227 227 6 227 5 1 4 44 89 -9.856 -0.002 -13.367 -11.535 -12.641 0.000 0.000 0.000 0.000 [ MATP 63 ] 244 268 c g - - MP 228 227 6 232 6 2 6 43 88 -20.427 -7.570 -0.016 -14.347 -7.496 -19.817 -14.722 -14.416 -14.721 0.760 -7.741 -8.408 2.991 -8.329 -14.581 1.442 -15.094 0.154 1.164 -7.446 -3.159 -2.684 ML 229 227 6 232 6 1 1 41 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 230 227 6 232 6 1 3 40 85 -12.325 -11.054 -6.140 -11.032 -0.025 -9.246 -6.485 1.985 -6.936 -5.576 D 231 227 6 232 6 0 0 40 85 -10.344 -9.042 -0.673 -5.521 -5.539 -1.614 IL 232 232 5 232 6 1 1 42 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 233 233 6 233 5 1 4 42 87 -8.750 -0.005 -12.261 -10.429 -11.535 0.000 0.000 0.000 0.000 [ MATP 64 ] 245 266 G C - - MP 234 233 6 238 6 2 7 41 86 -20.419 -20.358 -0.000 -19.135 -19.414 -19.809 -14.447 -13.112 -14.270 1.827 -15.229 -14.873 1.888 -14.900 -14.684 3.074 -14.941 -6.692 -2.193 -10.073 -3.371 -8.039 ML 235 233 6 238 6 1 1 39 85 -7.612 -7.959 -0.381 -2.367 -7.808 -5.338 -0.822 -1.904 1.464 -1.290 MR 236 233 6 238 6 1 2 39 84 -14.658 -13.387 -9.295 -13.365 -0.003 -11.578 -3.831 1.412 -6.826 0.334 D 237 233 6 238 6 0 0 37 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 238 238 5 238 6 1 1 40 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 239 239 6 239 5 1 1 40 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 246 265 G C - - MP 240 239 6 244 6 2 5 39 84 -20.419 -20.358 -0.000 -19.135 -19.414 -16.568 -17.494 -7.376 -18.188 1.307 -7.306 -16.591 -3.253 -18.145 -16.304 3.741 -16.628 -10.779 -4.817 -16.876 -16.409 -16.851 ML 241 239 6 244 6 1 1 37 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 242 239 6 244 6 1 1 38 83 -14.658 -13.387 -9.295 -13.365 -0.022 -6.195 -8.588 1.714 -9.302 -0.485 D 243 239 6 244 6 0 0 36 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 244 244 5 244 6 1 1 38 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 245 245 6 245 5 1 1 38 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 247 264 G C - - MP 246 245 6 250 4 2 3 37 82 -7.402 -6.745 -0.022 -18.270 -18.318 -14.976 -20.505 -4.023 -19.968 -16.149 -14.277 -20.019 -16.343 3.993 -16.539 -6.120 -14.638 -16.613 -16.722 -19.528 ML 247 245 6 250 4 1 1 36 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 248 245 6 250 4 1 2 37 82 -0.006 -11.692 -9.560 -8.620 -9.228 1.998 -9.790 -8.065 D 249 245 6 250 4 0 0 36 82 -6.915 -6.596 -4.612 -0.089 IL 250 250 5 250 4 1 2 36 81 -10.224 -10.907 -0.002 -13.393 0.000 0.000 0.000 0.000 IR 251 251 6 251 3 1 2 37 82 -1.285 -0.762 -11.975 0.000 0.000 0.000 0.000 [ MATL 67 ] 249 - U - - - ML 252 251 6 254 3 1 1 34 80 -20.568 -0.043 -5.102 -4.834 -7.350 -15.844 1.985 D 253 251 6 254 3 0 0 37 82 -8.941 -0.154 -3.333 IL 254 254 3 254 3 1 1 38 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 250 - U - - - ML 255 254 3 257 3 1 4 15 60 -20.525 -0.000 -19.180 -14.487 -4.167 -5.359 1.971 D 256 254 3 257 3 0 0 42 88 -16.886 -12.399 -0.000 IL 257 257 3 257 3 1 1 38 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 251 - C - - - ML 258 257 3 260 3 1 3 14 59 -20.525 -0.000 -19.180 -4.471 1.951 -4.688 -4.329 D 259 257 3 260 3 0 0 42 88 -16.886 -12.399 -0.000 IL 260 260 3 260 3 1 1 38 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 252 - G - - - ML 261 260 3 263 3 1 2 12 57 -20.525 -0.000 -19.180 0.759 -3.739 1.133 -4.686 D 262 260 3 263 3 0 0 42 88 -16.886 -12.399 -0.000 IL 263 263 3 263 3 1 1 38 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 253 - A - - - ML 264 263 3 266 3 1 1 8 54 -20.525 -0.000 -19.180 1.934 -4.686 -3.297 -4.686 D 265 263 3 266 3 0 0 42 88 -0.001 -12.399 -11.277 IL 266 266 3 266 3 1 1 42 88 -0.586 -1.584 -14.445 0.000 0.000 0.000 0.000 [ MATL 72 ] 260 - G - - - ML 267 266 3 269 3 1 1 4 23 -20.568 -0.000 -16.056 -1.274 -1.505 1.377 -0.652 D 268 266 3 269 3 0 0 13 32 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 261 - U - - - ML 270 269 3 272 2 1 1 1 1 * 0.000 -7.275 -1.543 -5.210 1.857 D 271 269 3 272 2 0 0 0 0 * 0.000 IL 272 272 3 272 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 74 ] - - - - - - E 273 272 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Leu ACC bact-Leu-r2-022416 LENG 85 MAXL 1360 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 16:58:49 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Leu-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Leu-r2-022416.sto NSEQ 23606 EFFN 19.386021 CKSUM 2560531045 STATS LOCAL MSV -8.9497 0.71877 STATS LOCAL VITERBI -9.7167 0.71877 STATS LOCAL FORWARD -3.2698 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50827 1.36936 1.24332 1.44386 1.38629 1.38629 1.38629 1.38629 0.01059 5.24625 5.24625 1.46634 0.26236 0.00000 * 1 2.28829 2.71499 0.27009 2.67302 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01059 5.24625 5.24625 1.46634 0.26236 1.09861 0.40547 2 2.29653 0.59069 1.63351 1.89574 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02066 5.25856 4.18354 1.46634 0.26236 1.09861 0.40547 3 1.92080 0.92029 1.11310 2.06699 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02519 4.29545 4.48782 0.97011 0.47649 1.59535 0.22670 4 1.93916 1.65689 0.54473 2.45988 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01063 5.24248 5.24248 1.46634 0.26236 1.80201 0.18028 5 1.14271 2.12067 0.84403 2.03164 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01080 5.24457 5.20909 1.46634 0.26236 1.07159 0.41925 6 1.33815 1.57951 1.28498 1.36673 8 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03906 3.40664 5.26752 0.66910 0.71778 1.29062 0.32172 7 1.71222 2.79648 0.41761 2.30367 12 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01358 5.27419 4.78393 1.46634 0.26236 0.70164 0.68473 8 4.05949 3.82491 4.35553 0.05331 13 U - - , 1.38629 1.38629 1.38629 1.38629 0.01981 4.36645 4.97318 1.03134 0.44088 0.69967 0.68667 9 1.54530 3.06614 0.37814 2.90010 18 G - - , 1.38629 1.38629 1.38629 1.38629 0.09651 5.31407 2.44094 1.46634 0.26236 0.90544 0.51813 10 2.14330 2.86078 0.29159 2.54554 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02674 5.23026 3.86165 1.46634 0.26236 2.98023 0.05212 11 3.01125 0.63573 2.54878 1.06990 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02402 4.54394 4.33492 0.82680 0.57527 3.11893 0.04521 12 2.38717 2.50500 0.33665 2.18680 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.01556 5.20676 4.60936 1.46634 0.26236 0.48860 0.95058 13 1.48392 1.62607 0.88536 1.80798 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.07948 2.64226 5.25883 1.34807 0.30075 2.31255 0.10426 14 0.06675 4.26629 4.34780 3.28072 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01028 5.27560 5.27560 1.46634 0.26236 1.76219 0.18834 15 0.13382 3.78929 2.46859 4.02116 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01531 5.28015 4.59483 1.46634 0.26236 2.21841 0.11517 16 2.99355 1.86588 3.83182 0.25688 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.23709 5.27566 1.58004 1.46634 0.26236 2.39908 0.09519 17 2.28025 2.21620 3.77324 0.26691 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07015 2.79118 5.05144 0.54558 0.86632 0.24704 1.51919 18 4.14148 5.09051 0.04748 3.71668 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02192 4.12582 5.19816 0.85764 0.55193 1.58355 0.22972 19 4.66210 6.05187 0.01634 5.42352 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01026 5.27767 5.27767 1.46634 0.26236 2.08519 0.13271 20 2.43872 1.13906 3.63340 0.56884 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.16472 2.71249 2.45931 0.62116 0.77072 2.33193 0.10215 21 0.20766 2.65760 3.27470 2.53105 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01222 5.19550 5.02045 1.46634 0.26236 0.43912 1.03452 22 1.59034 3.58348 0.34589 2.80060 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10505 5.27849 2.35790 1.46634 0.26236 1.31653 0.31206 23 0.56260 2.38375 1.55610 2.06268 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03076 3.69912 5.19476 0.40035 1.10893 2.97425 0.05244 24 2.16213 0.39559 2.38447 2.12442 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.01303 5.19664 4.90540 1.46634 0.26236 1.84946 0.17117 25 1.16918 2.69858 0.58225 2.75772 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.01269 5.21165 4.94008 1.46634 0.26236 3.14142 0.04418 26 2.98308 0.31291 2.57032 1.95518 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.07549 5.20994 2.69938 1.46634 0.26236 0.15906 1.91692 27 0.98144 2.99974 0.66357 2.80647 55 G - - , 1.38629 1.38629 1.38629 1.38629 0.06856 3.70582 3.17769 0.38273 1.14569 1.69196 0.20354 28 1.66320 0.70461 1.84949 1.83980 57 c - - < 1.38629 1.38629 1.38629 1.38629 0.05115 3.81295 3.58333 0.43201 1.04754 3.03541 0.04925 29 1.79419 1.09322 1.77754 1.11003 59 c - - < 1.38629 1.38629 1.38629 1.38629 0.03298 5.20160 3.61442 1.46634 0.26236 3.21765 0.04087 30 1.07372 2.29267 0.80872 2.19067 60 g - - < 1.38629 1.38629 1.38629 1.38629 0.06601 5.17995 2.84298 1.46634 0.26236 3.20128 0.04156 31 2.05592 2.32599 0.37780 2.41944 61 G - - < 1.38629 1.38629 1.38629 1.38629 0.14036 4.01737 2.18076 0.56508 0.84006 3.63849 0.02664 32 0.99124 1.26775 1.73726 1.76367 63 a - - < 1.38629 1.38629 1.38629 1.38629 0.03833 5.01373 3.47515 1.46634 0.26236 1.31987 0.31084 33 3.14349 0.88060 3.81200 0.65348 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01252 5.08008 5.08008 1.46634 0.26236 0.54903 0.86159 34 3.84569 3.24794 4.18095 0.07851 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01080 5.22684 5.22684 1.46634 0.26236 0.69200 0.69429 35 1.47450 1.40188 1.35109 1.32420 66 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01029 5.27494 5.27494 1.46634 0.26236 1.23023 0.34563 36 1.35010 1.42260 1.36384 1.41049 67 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01017 5.28643 5.28643 1.46634 0.26236 0.44926 1.01639 37 1.18340 1.59496 1.35761 1.45427 68 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05959 3.56134 3.52502 1.50494 0.25107 1.43945 0.27057 38 0.58661 4.62092 0.86505 4.34930 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01019 5.28500 5.28500 1.46634 0.26236 0.24583 1.52353 39 0.65637 2.29411 2.30375 1.27106 76 A - - _ 1.38629 1.38629 1.38629 1.38629 0.35803 1.26295 4.01033 4.45881 0.01164 1.09861 0.40547 40 1.93772 1.83528 1.11006 1.00278 202 u - - > 1.38629 1.38629 1.38629 1.38629 0.14745 4.62471 2.06129 0.82165 0.57930 1.73862 0.19330 41 2.62960 0.47716 2.02263 1.74272 204 C - - > 1.38629 1.38629 1.38629 1.38629 0.02071 4.21166 5.17206 0.64388 0.74497 1.86617 0.16808 42 2.53505 0.78396 2.27852 1.01690 206 c - - > 1.38629 1.38629 1.38629 1.38629 0.01281 5.19273 4.93741 1.46634 0.26236 3.27992 0.03836 43 1.22830 1.96984 0.94232 1.72594 207 g - - > 1.38629 1.38629 1.38629 1.38629 0.02880 3.77981 5.19111 0.68671 0.69962 2.71831 0.06826 44 1.97627 2.00824 0.62324 1.65557 210 G - - > 1.38629 1.38629 1.38629 1.38629 0.01540 5.19541 4.63145 1.46634 0.26236 0.07975 2.56848 45 2.04267 1.05940 2.20260 0.88397 211 u - - , 1.38629 1.38629 1.38629 1.38629 0.15649 2.67578 2.57696 0.19571 1.72737 1.29359 0.32060 46 1.75784 2.84118 0.36814 2.56126 214 G - - < 1.38629 1.38629 1.38629 1.38629 0.10632 5.23852 2.34802 1.46634 0.26236 2.84628 0.05981 47 1.94020 0.97476 1.49651 1.36597 215 c - - < 1.38629 1.38629 1.38629 1.38629 0.01919 5.14425 4.32940 1.46634 0.26236 3.46799 0.03168 48 1.98953 0.80980 1.75071 1.40796 216 c - - < 1.38629 1.38629 1.38629 1.38629 0.78879 0.63206 4.26082 0.47437 0.97359 1.83401 0.17408 49 2.18498 2.74597 0.65280 1.19485 224 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02074 5.15714 4.21554 1.46634 0.26236 2.68825 0.07042 50 1.45796 1.43131 2.44905 0.81663 225 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01162 5.15525 5.15235 1.46634 0.26236 3.45950 0.03195 51 0.55767 1.93248 2.13493 1.80533 226 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10983 2.61202 3.48582 0.41362 1.08249 2.56287 0.08022 52 0.59879 1.86738 1.94547 1.87682 230 A - - _ 1.38629 1.38629 1.38629 1.38629 0.93251 0.54382 3.65309 0.46341 0.99191 2.13455 0.12590 53 1.85680 1.98796 0.63551 1.73053 236 G - - > 1.38629 1.38629 1.38629 1.38629 0.01185 5.13844 5.13009 1.46634 0.26236 2.84630 0.05981 54 1.52108 1.60562 0.97994 1.58267 237 g - - > 1.38629 1.38629 1.38629 1.38629 0.01179 5.14479 5.13502 1.46634 0.26236 3.39402 0.03415 55 2.87171 0.47774 2.56102 1.40246 238 C - - > 1.38629 1.38629 1.38629 1.38629 0.01245 5.14576 5.02779 1.46634 0.26236 0.23504 1.56321 56 1.93525 2.03656 0.46744 2.31740 239 G - - , 1.38629 1.38629 1.38629 1.38629 0.26052 1.49477 5.28883 0.06311 2.79430 0.27117 1.43752 57 3.69122 2.86765 2.87455 0.14875 242 U - - , 1.38629 1.38629 1.38629 1.38629 0.00988 5.31581 5.31581 1.46634 0.26236 1.09861 0.40547 58 1.92707 2.60807 0.32147 2.88834 243 G - - < 1.38629 1.38629 1.38629 1.38629 0.01111 5.31581 5.09403 1.46634 0.26236 1.09861 0.40547 59 2.08970 0.83374 1.47156 1.54981 244 c - - < 1.38629 1.38629 1.38629 1.38629 0.01489 5.31459 4.61938 1.46634 0.26236 1.17054 0.37135 60 1.53190 1.64623 0.64054 2.74742 245 G - - < 1.38629 1.38629 1.38629 1.38629 0.00994 5.30968 5.30968 1.46634 0.26236 1.44570 0.26864 61 1.82836 3.55551 0.24634 3.53705 246 G - - < 1.38629 1.38629 1.38629 1.38629 0.00994 5.30968 5.30802 1.46634 0.26236 0.64453 0.74425 62 4.11464 5.40704 0.02566 5.39944 247 G - - < 1.38629 1.38629 1.38629 1.38629 0.01518 4.59011 5.31572 0.78868 0.60595 1.10470 0.40243 63 3.79893 3.97836 4.68486 0.05166 249 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03646 5.31572 3.47738 1.46634 0.26236 1.08655 0.41155 64 3.86996 3.39506 4.06029 0.07434 250 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01014 5.28950 5.28950 1.46634 0.26236 2.11458 0.12861 65 4.01364 0.05831 4.26226 3.70975 251 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01014 5.28950 5.28950 1.46634 0.26236 2.11458 0.12861 66 0.91171 3.35900 0.63849 3.34378 252 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01014 5.28950 5.28950 1.46634 0.26236 0.27624 1.42143 67 0.08665 3.77233 3.33243 3.71746 253 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03646 3.47747 5.31581 0.80539 0.59224 1.09861 0.40547 68 2.00497 2.32994 0.50478 1.80549 260 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00989 5.31581 5.31345 1.46634 0.26236 1.09861 0.40547 69 3.74348 2.42529 3.98473 0.14009 261 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01834 4.32955 5.29765 0.87124 0.54203 1.09704 0.40625 70 5.33681 0.03336 5.28470 3.77527 264 C - - > 1.38629 1.38629 1.38629 1.38629 0.00988 5.31572 5.31572 1.46634 0.26236 1.08655 0.41155 71 3.73709 0.26796 3.39736 1.72721 265 C - - > 1.38629 1.38629 1.38629 1.38629 0.00992 5.31581 5.30746 1.46634 0.26236 1.09861 0.40547 72 3.01411 0.68367 1.58189 1.42478 266 C - - > 1.38629 1.38629 1.38629 1.38629 0.01465 4.64568 5.30970 0.82709 0.57505 1.09305 0.40826 73 1.71894 1.75262 0.78150 1.66227 268 g - - > 1.38629 1.38629 1.38629 1.38629 0.02019 4.19472 5.31578 0.55939 0.84761 1.09457 0.40749 74 3.30333 0.55037 2.49544 1.19059 270 C - - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.03554 5.31421 1.05177 0.42973 1.09861 0.40547 75 2.78256 0.49452 2.68314 1.34743 274 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01433 4.67749 5.31421 0.85102 0.55683 1.09861 0.40547 76 1.62325 1.33936 1.42494 1.20328 276 u - - ) 1.38629 1.38629 1.38629 1.38629 0.04895 3.51935 4.00879 0.49408 0.94195 1.09861 0.40547 77 2.29630 0.90291 1.93481 1.05117 279 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01018 5.30000 5.27189 1.46634 0.26236 1.00020 0.45856 78 2.65533 0.60161 1.57853 1.74001 280 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02378 5.30530 3.98802 1.46634 0.26236 0.56636 0.83838 79 2.19923 1.17450 0.87700 1.80723 281 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01004 5.29978 5.29978 1.46634 0.26236 0.42900 1.05314 80 2.16824 1.80713 0.49885 2.16922 282 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00990 5.31333 5.31333 1.46634 0.26236 1.09861 0.40547 81 2.80486 0.37447 2.60542 1.72619 283 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01696 4.43220 5.31333 0.68976 0.69655 1.09861 0.40547 82 0.17243 3.01545 2.87294 2.94079 285 A - - : 1.38629 1.38629 1.38629 1.38629 0.14949 4.99889 2.02417 1.46634 0.26236 1.09861 0.40547 83 4.89369 0.02715 5.25351 4.26401 286 C - - : 1.38629 1.38629 1.38629 1.38629 0.01554 4.86495 4.86495 1.46634 0.26236 3.07196 0.04744 84 4.89369 0.02715 5.25351 4.26401 287 C - - : 1.38629 1.38629 1.38629 1.38629 0.01554 4.86495 4.86495 1.46634 0.26236 3.07196 0.04744 85 0.02022 5.22987 4.83296 5.00567 288 A - - : 1.38629 1.38629 1.38629 1.38629 0.00780 4.85721 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Lys ACC bact-Lys-r2-022416 STATES 242 NODES 65 CLEN 76 W 1251 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 17:25:06 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Lys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Lys-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Lys-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Lys-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12092 EFFN 12092.000000 CKSUM 3621582992 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.7860 0.71884 ECMLC 0.61295 -8.08736 1.96217 1600000 568033 0.002113 ECMGC 0.41263 -21.38061 -10.56158 1600000 34743 0.011513 ECMLI 0.57955 -8.13751 2.34795 1600000 522778 0.002295 ECMGI 0.40363 -20.10446 -9.18706 1600000 32797 0.012196 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1251 2679 -18.488 -19.733 -0.727 -1.338 IL 1 1 2 1 4 11 33 1254 2682 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 12 35 1255 2683 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 280 - A - - MR 3 2 3 5 3 17 41 1254 2682 -19.170 -0.000 -17.487 2.000 -14.795 -14.069 -14.126 D 4 2 3 5 3 9 29 1247 2675 -19.653 -14.830 -0.000 IR 5 5 3 5 3 12 35 1254 2682 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 279 - C - - MR 6 5 3 8 3 16 40 1253 2681 -19.170 -0.000 -17.487 -15.936 2.000 -17.195 -13.995 D 7 5 3 8 3 9 29 1247 2675 -19.653 -14.830 -0.000 IR 8 8 3 8 3 12 35 1253 2681 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 278 - C - - MR 9 8 3 11 3 15 39 1252 2680 -19.170 -0.000 -17.487 -15.936 2.000 -17.195 -13.995 D 10 8 3 11 3 9 29 1247 2675 -19.653 -0.456 -1.883 IR 11 11 3 11 3 11 33 1251 2679 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 277 - A - - MR 12 11 3 14 5 14 38 1251 2679 -6.152 -0.157 -18.188 -3.487 -19.292 1.233 -2.387 -0.256 -0.687 D 13 11 3 14 5 9 27 1236 2664 -15.897 -11.251 -9.987 -14.954 -0.002 IR 14 14 3 14 5 15 40 1251 2679 -9.037 -0.004 -12.548 -10.716 -11.822 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 275 G C - - MP 15 14 3 19 6 16 39 1250 2678 -19.166 -6.925 -0.031 -10.319 -6.359 -18.556 -1.867 -11.777 -12.953 -1.219 -3.090 -13.550 0.836 -3.256 -3.803 3.621 -12.422 -0.700 -3.023 -12.809 -2.553 -11.916 ML 16 14 3 19 6 12 34 1248 2676 -7.674 -8.020 -2.735 -0.299 -7.870 -5.400 -0.918 -1.020 -1.614 1.407 MR 17 14 3 19 6 12 34 1247 2675 -17.224 -15.953 -1.230 -15.931 -0.873 -5.190 -2.946 1.897 -10.292 -2.786 D 18 14 3 19 6 9 27 1236 2664 -20.265 -18.963 -14.760 -15.442 -15.459 -0.000 IL 19 19 5 19 6 12 34 1249 2677 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 14 38 1249 2677 -8.143 -0.008 -11.654 -9.822 -10.928 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 273 c g - - MP 21 20 6 25 6 14 37 1248 2676 -19.207 -19.146 -0.030 -7.722 -6.550 -7.675 -9.914 -6.317 -13.016 1.200 -8.060 -7.672 2.739 -13.373 -12.286 2.303 -3.577 -1.054 -0.640 -2.981 -2.800 -0.766 ML 22 20 6 25 6 13 36 1247 2675 -10.029 -10.375 -0.064 -4.784 -10.225 -7.754 -1.213 1.718 -3.828 -2.262 MR 23 20 6 25 6 15 34 1244 2672 -16.648 -15.377 -3.298 -15.356 -0.155 -13.569 -3.439 0.962 0.185 -0.280 D 24 20 6 25 6 9 27 1236 2664 -20.294 -18.992 -7.177 -15.471 -15.489 -0.010 IL 25 25 5 25 6 12 33 1247 2675 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 12 34 1247 2675 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 272 G C - - MP 27 26 6 31 6 17 37 1246 2674 -19.189 -19.129 -0.019 -8.239 -6.675 -18.580 -13.155 -10.025 -5.997 0.932 -14.078 -13.571 1.082 -13.656 -3.954 3.344 -12.927 -1.249 0.291 -12.830 -3.437 -11.938 ML 28 26 6 31 6 14 35 1244 2672 -12.380 -12.726 -7.440 -0.010 -12.576 -10.105 -6.324 -8.083 1.991 -7.083 MR 29 26 6 31 6 14 33 1243 2671 -16.740 -3.058 -4.204 -15.447 -0.277 -13.661 0.587 1.011 -4.526 -1.187 D 30 26 6 31 6 9 27 1236 2664 -20.337 -19.035 -14.832 -15.514 -15.532 -0.000 IL 31 31 5 31 6 12 33 1245 2673 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 14 36 1245 2673 -8.174 -0.008 -11.685 -9.852 -10.958 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 270 C G - - MP 33 32 6 37 6 16 35 1244 2672 -7.278 -19.127 -0.013 -17.903 -8.496 -18.578 -13.764 -13.482 -13.732 -0.488 -7.311 -14.524 3.008 -13.234 -13.603 0.520 -14.094 -11.064 2.174 -13.932 0.361 -8.092 ML 34 32 6 37 6 14 34 1243 2671 -13.129 -13.475 -0.007 -7.883 -13.325 -10.854 -8.912 -7.942 -10.051 1.997 MR 35 32 6 37 6 13 31 1241 2669 -16.693 -15.422 -1.973 -15.401 -0.424 -13.614 0.925 -10.376 1.070 -10.273 D 36 32 6 37 6 9 27 1236 2664 -20.337 -19.035 -14.832 -15.514 -15.532 -0.000 IL 37 37 5 37 6 14 34 1243 2671 -8.698 -8.960 -0.009 -10.616 -11.392 -11.052 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 12 33 1243 2671 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 269 C G - - MP 39 38 6 43 6 15 33 1242 2670 -19.220 -19.159 -0.000 -17.935 -18.215 -18.610 -13.516 -13.217 -8.150 -1.040 -10.503 -14.360 3.246 -3.760 -13.374 1.407 -5.044 -5.223 1.538 -6.809 -1.623 -12.093 ML 40 38 6 43 6 11 31 1240 2668 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 11 30 1239 2667 -16.348 -15.077 -4.276 -15.055 -0.077 -13.269 0.416 -3.341 1.282 -2.887 D 42 38 6 43 6 9 27 1236 2664 -20.337 -19.035 -14.832 -15.514 -15.532 -0.000 IL 43 43 5 43 6 12 32 1241 2669 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 12 32 1241 2669 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 268 a u - - MP 45 44 6 49 6 13 31 1240 2668 -4.962 -19.163 -0.053 -17.939 -7.900 -18.614 -13.192 -9.666 -3.123 2.767 -14.080 -5.269 0.254 -13.682 -13.442 2.574 -13.693 -6.366 -0.040 -2.935 -0.345 -10.100 ML 46 44 6 49 6 11 29 1239 2667 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 10 29 1238 2666 -16.272 -15.001 -1.515 -14.980 -0.622 -13.193 -1.288 1.050 0.124 -1.216 D 48 44 6 49 6 9 27 1236 2664 -20.337 -19.035 -4.265 -15.514 -15.532 -0.077 IL 49 49 5 49 6 10 28 1238 2666 -11.032 -11.295 -1.979 -12.950 -13.727 -0.424 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 11 30 1239 2667 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 267 U A - - MP 51 50 6 55 4 11 29 1238 2666 -18.447 -18.654 -0.000 -13.320 -1.449 -5.930 -13.100 0.335 -5.837 -13.944 1.027 -12.817 -2.698 1.496 -13.545 -3.165 3.128 -3.696 -1.857 -3.114 ML 52 50 6 55 4 10 28 1238 2665 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 9 28 1237 2665 -13.857 -12.886 -1.778 -0.498 1.399 0.357 -3.704 -7.474 D 54 50 6 55 4 9 27 1236 2664 -15.933 -15.614 -0.382 -2.105 IL 55 55 5 55 4 10 29 1238 2666 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 10 29 1238 2666 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - - - ML 57 56 6 59 3 9 27 1236 2664 -19.528 -0.000 -18.182 -3.747 -12.536 -5.297 1.963 D 58 56 6 59 3 8 26 1235 2663 -16.731 -0.042 -5.132 IL 59 59 3 59 3 9 28 1237 2665 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 60 59 3 62 2 8 26 1235 2663 -20.257 -0.000 1.910 -3.511 -3.092 -4.795 D 61 59 3 62 2 7 25 1234 2662 -10.273 -0.001 IL 62 62 3 62 2 8 27 1236 2664 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 7 25 1234 2662 [ BEGR 46 ] - - - - - - S 64 63 1 65 3 0 2 406 881 -19.603 -0.000 -18.257 IL 65 65 2 65 3 1 2 409 884 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 184 - u - - - ML 66 65 2 68 3 1 2 406 881 -19.603 -0.328 -2.298 0.093 -2.207 0.432 0.452 D 67 65 2 68 3 0 1 418 893 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 2 402 877 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 185 - G - - - ML 69 68 3 71 3 1 2 396 871 -2.279 -0.333 -17.929 -1.898 -3.868 1.735 -1.583 D 70 68 3 71 3 0 1 425 899 -0.606 -1.693 -4.889 IL 71 71 3 71 3 1 2 436 910 -0.056 -4.755 -9.912 0.000 0.000 0.000 0.000 [ MATL 49 ] 242 - G - - - ML 72 71 3 74 3 1 1 54 102 -19.581 -0.175 -3.128 -1.023 -6.525 1.797 -5.522 D 73 71 3 74 3 0 0 52 100 -14.962 -10.475 -0.001 IL 74 74 3 74 3 1 2 55 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 243 - U - - - ML 75 74 3 77 3 1 3 53 101 -19.406 -0.000 -18.060 -1.179 -1.903 -2.402 1.633 D 76 74 3 77 3 0 0 52 100 -18.052 -0.064 -4.531 IL 77 77 3 77 3 1 1 53 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 244 - C - - - ML 78 77 3 80 5 1 2 52 100 -18.528 -0.000 -18.343 -18.556 -19.447 -2.212 1.293 -0.989 -0.268 D 79 77 3 80 5 0 0 48 96 -11.487 -1.463 -10.748 -0.717 -5.157 IL 80 80 3 80 5 1 1 52 100 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 245 266 G C - - MP 81 80 3 85 6 2 3 51 99 -19.459 -19.398 -0.002 -9.397 -18.455 -18.850 -13.424 -6.352 -13.243 0.141 -14.368 -13.839 1.727 -5.455 -4.969 3.341 -12.639 -0.061 -3.473 -13.097 -1.583 -12.208 ML 82 80 3 85 6 1 1 48 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 39 87 -12.689 -11.418 -7.327 -11.396 -0.030 -6.203 1.992 -7.584 -6.880 -7.028 D 84 80 3 85 6 0 0 40 88 -11.127 -9.825 -5.622 -6.304 -6.321 -0.069 IL 85 85 5 85 6 1 1 50 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 246 265 C G - - MP 87 86 6 91 6 2 2 49 97 -19.457 -19.396 -0.017 -18.173 -7.743 -7.185 -13.706 -9.421 -8.559 0.929 -4.953 -14.556 3.131 -5.077 -12.484 1.115 -11.371 -1.364 1.213 -4.529 -3.156 -2.038 ML 88 86 6 91 6 1 1 38 86 -10.989 -11.335 -6.050 -0.027 -11.185 -8.715 1.982 -6.305 -5.692 -5.901 MR 89 86 6 91 6 1 1 36 84 -12.671 -11.400 -7.309 -0.028 -6.512 -9.592 -6.101 -7.852 1.990 -6.859 D 90 86 6 91 6 0 0 36 84 -11.416 -10.114 -5.911 -6.593 -6.611 -0.057 IL 91 91 5 91 6 1 1 48 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 247 264 g c - - MP 93 92 6 97 6 2 3 47 95 -4.766 -19.379 -0.054 -18.156 -18.436 -18.831 -3.619 -2.169 -13.222 1.969 -14.352 -13.817 -0.309 -10.477 -5.149 2.828 -12.620 1.363 0.340 -13.076 -9.019 -8.411 ML 94 92 6 97 6 1 1 32 80 -12.654 -13.001 -7.715 -0.009 -12.850 -10.380 1.464 -6.680 0.287 -6.589 MR 95 92 6 97 6 1 1 31 79 -13.143 -11.872 -7.781 -11.851 -0.009 -10.064 -8.082 -7.250 -9.121 1.996 D 96 92 6 97 6 0 0 24 72 -16.343 -15.041 -10.838 -11.520 -11.538 -0.002 IL 97 97 5 97 6 1 2 53 101 -0.554 -13.355 -1.649 -15.010 -15.786 -15.447 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 21 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 252 263 G C - - MP 99 98 6 103 6 2 3 17 35 -19.440 -7.513 -0.008 -18.156 -18.436 -18.831 -16.121 -13.676 -16.488 -0.393 -17.338 -15.018 -2.180 -16.961 -12.998 3.854 -3.618 -2.822 -1.585 -11.033 -14.319 -15.440 ML 100 98 6 103 6 1 1 19 38 -12.654 -13.001 -0.010 -7.409 -12.850 -10.380 -6.573 -8.339 1.993 -7.334 MR 101 98 6 103 6 1 1 19 38 -13.143 -11.872 -7.781 -11.851 -6.984 -0.019 -8.082 -7.250 -9.121 1.996 D 102 98 6 103 6 0 0 17 35 -16.343 -15.041 -10.838 -11.520 -11.538 -0.002 IL 103 103 5 103 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 18 36 -7.836 -0.010 -11.347 -9.514 -10.620 0.000 0.000 0.000 0.000 [ MATP 56 ] 253 261 G C - - MP 105 104 6 109 4 2 2 14 33 -18.677 -18.884 -0.003 -8.958 -16.191 -14.074 -16.668 -4.648 -18.332 -16.009 -13.299 -16.665 -4.963 3.985 -15.724 -4.171 -13.436 -16.130 -15.420 -4.924 ML 106 104 6 109 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 16 35 -12.493 -12.174 -10.190 -0.002 IL 109 109 5 109 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 254 - U - - - ML 111 110 6 113 3 1 1 12 30 -19.583 -0.002 -9.382 -6.545 -13.364 -7.072 1.993 D 112 110 6 113 3 0 0 13 31 -14.831 -8.018 -0.006 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 255 - U - - - ML 114 113 3 116 3 1 2 11 29 -19.581 -0.000 -18.235 -7.446 -7.087 -7.174 1.993 D 115 113 3 116 3 0 0 12 30 -14.974 -0.776 -1.266 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 256 - C - - - ML 117 116 3 119 3 1 2 9 28 -19.594 -0.000 -18.248 -5.134 1.963 -5.797 -4.196 D 118 116 3 119 3 0 0 11 30 -13.711 -9.224 -0.003 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 257 - G - - - ML 120 119 3 122 3 1 2 8 27 -19.594 -0.000 -18.248 -1.274 -5.789 1.825 -5.305 D 121 119 3 122 3 0 0 10 29 -13.711 -0.392 -2.072 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 258 - A - - - ML 123 122 3 125 3 1 2 7 25 -19.601 -0.000 -18.255 1.971 -5.079 -5.121 -5.648 D 124 122 3 125 3 0 0 11 29 -11.650 -7.163 -0.011 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 259 - G - - - ML 126 125 3 128 3 1 1 5 23 -19.601 -0.005 -8.240 0.266 -2.240 1.040 -0.917 D 127 125 3 128 3 0 0 9 28 -11.650 -0.023 -6.042 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 260 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -4.056 -1.154 -2.123 1.705 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 0 8 1202 2630 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 185 0 8 1202 2630 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 1 1183 2611 -0.023 -7.160 -7.753 -7.820 [ MATP 18 ] 12 137 G C - - MP 136 135 1 140 6 2 3 1183 2611 -19.441 -19.380 -0.028 -7.742 -6.119 -18.831 -4.000 -4.084 -16.550 0.984 -17.658 -15.338 -2.676 -16.828 -15.180 3.707 -7.332 -0.584 -12.769 -6.868 -14.664 -15.372 ML 137 135 1 140 6 1 2 1179 2607 -13.190 -13.537 -8.251 -0.006 -13.386 -10.916 -9.007 -8.021 -10.158 1.998 MR 138 135 1 140 6 1 1 1179 2607 -13.139 -11.868 -4.139 -11.846 -0.390 -2.480 -7.390 1.992 -7.861 -6.421 D 139 135 1 140 6 0 0 1178 2606 -15.680 -14.378 -10.175 -0.014 -10.875 -6.950 IL 140 140 5 140 6 1 1 1182 2610 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 1182 2610 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 136 C G - - MP 142 141 6 146 6 2 2 1181 2609 -19.413 -19.353 -0.007 -9.836 -9.415 -8.997 -16.193 -16.327 -5.983 -2.580 -3.266 -15.854 3.742 -14.927 -15.694 -6.185 -15.871 -3.102 1.020 -16.095 -8.674 -2.522 ML 143 141 6 146 6 1 1 1178 2606 -14.379 -14.725 -9.440 -0.837 -14.575 -1.189 -0.027 0.668 0.508 -7.030 MR 144 141 6 146 6 1 1 1178 2606 -15.060 -13.789 -6.019 -13.767 -1.168 -0.891 0.747 0.507 -0.159 -7.620 D 145 141 6 146 6 0 0 1176 2604 -13.340 -12.038 -7.835 -8.517 -8.535 -0.015 IL 146 146 5 146 6 1 1 1180 2608 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 1180 2608 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 135 U A - - MP 148 147 6 152 6 2 5 1179 2607 -19.407 -4.960 -0.047 -18.123 -18.403 -18.798 -16.255 -16.022 -15.734 -2.097 -14.268 -16.058 -1.362 -15.080 -4.909 -1.628 -15.962 -6.192 3.828 -16.312 -0.319 -14.588 ML 149 147 6 152 6 1 1 1178 2606 -13.706 -14.052 -1.136 -1.289 -13.902 -2.884 -0.127 0.628 -1.215 0.148 MR 150 147 6 152 6 1 2 1178 2606 -14.133 -12.862 -1.031 -12.840 -0.972 -11.054 -0.051 -6.496 -7.456 1.594 D 151 147 6 152 6 0 0 1176 2604 -17.798 -16.497 -12.294 -0.759 -12.993 -1.291 IL 152 152 5 152 6 1 1 1178 2606 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 4 1178 2606 -10.328 -0.002 -13.839 -12.007 -13.113 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 133 C G - - MP 154 153 6 158 4 2 3 1177 2605 -18.651 -18.858 -0.000 -17.272 -6.371 -16.751 -15.797 -5.065 -14.149 -15.943 3.921 -2.446 -4.376 -12.963 -16.020 -5.834 -3.393 -16.314 -1.598 -2.839 ML 155 153 6 158 4 1 1 1177 2605 -11.423 -0.525 -2.814 -2.624 1.522 0.161 -8.030 -7.282 MR 156 153 6 158 4 1 1 1177 2605 -11.193 -0.328 -8.090 -2.327 -6.553 -8.318 1.993 -7.314 D 157 153 6 158 4 0 0 1174 2602 -12.160 -11.841 -1.143 -0.871 IL 158 158 5 158 4 1 1 1177 2605 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 1 1176 2604 -8.219 -0.006 -10.919 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - A - - - ML 160 159 6 162 3 1 1 1175 2603 -19.591 -0.056 -4.723 1.956 -5.044 -4.038 -5.145 D 161 159 6 162 3 0 0 1174 2601 -14.149 -0.605 -1.547 IL 162 162 3 162 3 1 1 1176 2604 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - G - - - ML 163 162 3 165 3 1 1 1174 2602 -19.544 -0.000 -12.024 -0.693 -4.418 1.577 -1.508 D 164 162 3 165 3 0 0 1172 2600 -16.395 -11.908 -0.000 IL 165 165 3 165 3 1 1 1175 2603 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - U - - - ML 166 165 3 168 3 1 1 1173 2601 -19.543 -0.293 -2.442 -3.053 0.467 -3.861 1.280 D 167 165 3 168 3 0 0 1172 2600 -16.403 -11.916 -0.000 IL 168 168 3 168 3 1 1 1174 2602 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - U - - - ML 169 168 3 171 3 1 2 1172 2600 -2.317 -0.323 -17.904 -1.088 -0.639 -12.880 1.530 D 170 168 3 171 3 0 0 1172 2600 -18.819 -0.050 -4.887 IL 171 171 3 171 3 1 1 1185 2613 -2.846 -0.422 -3.128 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - G - - - ML 172 171 3 174 3 1 1 1167 2595 -1.617 -0.570 -11.486 -6.763 -15.021 1.930 -2.483 D 173 171 3 174 3 0 0 1247 2675 -0.111 -11.389 -3.765 IL 174 174 3 174 3 1 1 1253 2681 -0.019 -6.300 -12.973 0.000 0.000 0.000 0.000 [ MATL 27 ] 123 - G - - - ML 175 174 3 177 3 1 1 19 38 -19.595 -0.000 -18.249 -5.199 -5.653 1.983 -11.597 D 176 174 3 177 3 0 0 18 37 -13.578 -3.984 -0.094 IL 177 177 3 177 3 1 1 21 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 124 - U - - - ML 178 177 3 180 3 1 1 18 37 -1.894 -0.452 -18.249 -0.917 -0.281 -2.335 1.292 D 179 177 3 180 3 0 0 18 37 -0.699 -4.503 -1.557 IL 180 180 3 180 3 1 1 18 37 -1.387 -0.705 -7.971 0.000 0.000 0.000 0.000 [ MATL 29 ] 131 - A - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.923 -4.298 -3.092 -4.649 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 185 134 1 186 3 0 0 154 329 -19.603 -0.034 -5.423 IL 186 186 2 186 3 1 1 156 331 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 138 - A - - - ML 187 186 2 189 5 1 1 154 330 -18.502 -0.003 -18.317 -11.656 -9.418 1.430 -4.845 0.309 -4.939 D 188 186 2 189 5 0 0 148 323 -13.559 -5.981 -1.017 -1.080 -5.901 IL 189 189 3 189 5 1 1 154 329 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 139 183 a u - - MP 190 189 3 194 6 2 3 153 329 -19.428 -19.367 -0.006 -7.858 -18.424 -18.819 -10.604 -4.189 -6.635 2.386 -4.000 -11.653 1.009 -3.304 -0.580 1.341 -2.798 1.631 0.673 -2.184 -2.462 -3.464 ML 191 189 3 194 6 1 1 148 323 -13.910 -14.256 -8.970 -0.395 -14.106 -2.075 -10.045 -8.899 -11.342 1.999 MR 192 189 3 194 6 1 1 149 324 -14.420 -13.149 -2.791 -13.128 -0.271 -5.228 1.633 -7.051 -7.593 -0.174 D 193 189 3 194 6 0 0 140 315 -14.410 -13.108 -8.905 -9.588 -9.605 -0.007 IL 194 194 5 194 6 1 1 152 327 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 152 327 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 140 182 C G - - MP 196 195 6 200 6 2 3 151 327 -19.424 -19.363 -0.000 -18.140 -18.420 -18.815 -5.538 -1.659 -6.861 0.089 -9.561 -11.163 3.012 -13.230 -6.974 -2.863 -5.192 -1.485 2.545 -13.884 -2.875 -5.759 ML 197 195 6 200 6 1 1 148 323 -14.080 -14.426 -9.140 -0.003 -14.276 -11.805 -7.966 -9.034 1.558 0.069 MR 198 195 6 200 6 1 1 147 322 -14.154 -12.883 -8.791 -12.861 -0.151 -3.365 -7.346 -8.890 1.857 -1.438 D 199 195 6 200 6 0 0 140 315 -15.814 -14.512 -10.309 -10.992 -11.009 -0.003 IL 200 200 5 200 6 1 1 150 326 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 150 325 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 141 181 u a - - MP 202 201 6 206 6 2 3 149 325 -3.967 -19.363 -0.095 -18.140 -18.420 -18.815 -13.720 -13.417 -13.720 1.516 -10.914 -14.563 1.507 -13.241 -13.579 1.282 -14.092 -1.417 2.774 -11.703 -0.894 -3.147 ML 203 201 6 206 6 1 1 147 322 -14.080 -14.426 -9.140 -0.003 -14.276 -11.805 -9.199 1.998 -9.760 -8.040 MR 204 201 6 206 6 1 1 147 322 -14.007 -12.736 -8.645 -12.714 -0.005 -10.928 -9.426 -8.372 -10.635 1.998 D 205 201 6 206 6 0 0 140 315 -16.061 -14.760 -10.557 -1.080 -11.256 -0.927 IL 206 206 5 206 6 1 1 149 324 -12.226 -0.086 -4.119 -14.144 -14.921 -14.581 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 148 323 -11.252 -0.001 -14.763 -12.931 -14.036 0.000 0.000 0.000 0.000 [ MATP 36 ] 143 179 G C - - MP 208 207 6 212 6 2 3 147 322 -16.165 -19.363 -0.012 -6.902 -18.420 -18.815 -13.388 -11.532 -13.206 0.410 -14.337 -10.670 0.118 -13.896 -3.062 3.269 -6.291 1.866 -4.421 -3.936 -11.411 -4.188 ML 209 207 6 212 6 1 1 146 321 -14.355 -14.702 -0.450 -1.901 -14.551 -12.081 1.998 -9.652 -8.887 -8.997 MR 210 207 6 212 6 1 1 146 321 -14.007 -12.736 -8.645 -12.714 -0.005 -10.928 -9.426 -8.372 -10.635 1.998 D 211 207 6 212 6 0 0 122 297 -15.138 -13.836 -9.634 -10.316 -10.333 -0.004 IL 212 212 5 212 6 1 1 146 321 -2.784 -3.047 -0.633 -4.702 -5.479 -5.139 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 146 321 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 145 178 A U - - MP 214 213 6 218 4 2 2 145 320 -18.659 -4.884 -0.086 -5.393 -13.396 -4.674 -5.316 3.249 -14.339 -13.812 0.926 -12.583 -0.628 1.304 -3.916 0.262 -4.182 -13.070 -3.604 -7.142 ML 215 213 6 218 4 1 1 144 320 -11.090 -11.273 -0.003 -10.002 -8.058 0.172 -8.914 1.520 MR 216 213 6 218 4 1 1 145 320 -12.032 -0.009 -8.928 -7.989 -8.434 1.996 -8.950 -7.363 D 217 213 6 218 4 0 0 122 297 -10.562 -10.243 -3.308 -0.156 IL 218 218 5 218 4 1 1 144 320 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 219 219 6 219 3 1 1 144 319 -9.712 -0.129 -3.567 0.000 0.000 0.000 0.000 [ MATL 38 ] 146 - C - - - ML 220 219 6 222 3 1 1 143 319 -19.560 -0.050 -4.867 -5.853 1.325 -2.995 0.434 D 221 219 6 222 3 0 0 69 244 -15.938 -11.451 -0.001 IL 222 222 3 222 3 1 1 144 319 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 147 - U - - - ML 223 222 3 225 3 1 2 143 318 -2.448 -0.292 -18.164 -2.053 -3.847 -3.929 1.858 D 224 222 3 225 3 0 0 46 221 -17.027 -0.676 -1.418 IL 225 225 3 225 3 1 2 158 333 -0.152 -3.325 -17.781 0.000 0.000 0.000 0.000 [ MATL 40 ] 171 - u - - - ML 226 225 3 228 3 1 1 9 27 -19.569 -0.000 -18.223 -0.500 -0.125 -0.506 0.741 D 227 225 3 228 3 0 0 10 28 -15.610 -0.025 -5.863 IL 228 228 3 228 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 172 - u - - - ML 229 228 3 231 3 1 1 8 26 -19.603 -0.633 -1.493 -0.102 -0.003 -0.200 0.263 D 230 228 3 231 3 0 0 13 31 -9.785 -5.298 -0.039 IL 231 231 3 231 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 173 - u - - - ML 232 231 3 234 3 1 1 6 25 -5.258 -0.038 -17.623 0.132 -0.205 -0.179 0.206 D 233 231 3 234 3 0 0 4 22 -19.530 -15.043 -0.000 IL 234 234 3 234 3 1 1 6 25 -8.415 -0.005 -11.115 0.000 0.000 0.000 0.000 [ MATL 43 ] 175 - A - - - ML 235 234 3 237 3 1 1 5 24 -18.969 -0.000 -17.623 1.984 -6.537 -5.924 -5.808 D 236 234 3 237 3 0 0 4 22 -19.530 -15.043 -0.000 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 176 - A - - - ML 238 237 3 240 2 1 1 1 1 * 0.000 1.914 -3.334 -4.083 -3.768 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Lys ACC bact-Lys-r2-022416 LENG 76 MAXL 1233 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 17:25:07 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Lys-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Lys-r2-022416.sto NSEQ 12092 EFFN 17.594688 CKSUM 3621582992 STATS LOCAL MSV -8.6769 0.71884 STATS LOCAL VITERBI -9.4364 0.71884 STATS LOCAL FORWARD -3.4713 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46800 1.38651 1.28100 1.41919 1.38629 1.38629 1.38629 1.38629 0.03323 5.05662 3.63739 1.46634 0.26236 0.00000 * 1 2.11829 2.09079 0.38211 2.60705 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02372 5.03647 4.07806 1.46634 0.26236 1.14547 0.38283 2 1.74548 1.12691 1.12075 1.74085 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02641 5.06150 3.92586 1.46634 0.26236 1.91552 0.15931 3 1.82730 2.06785 0.50054 2.23970 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02137 5.05443 4.21592 1.46634 0.26236 2.18646 0.11914 4 2.46172 0.82717 2.03718 1.05833 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02081 4.43381 4.74091 0.86142 0.54916 1.16621 0.37330 5 2.53538 0.71321 1.71435 1.38382 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01267 5.06838 5.06838 1.46634 0.26236 2.12876 0.12668 6 1.10483 2.24206 0.86094 1.96805 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02343 4.32212 4.61668 0.77332 0.61893 1.09207 0.40875 7 1.84086 1.62345 1.56733 0.83126 9 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03331 5.08751 3.62747 1.46634 0.26236 1.29788 0.31898 8 3.29025 3.62623 3.95196 0.08673 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.01143 5.17017 5.17017 1.46634 0.26236 0.26757 1.44917 9 0.11101 3.33820 3.18478 3.56912 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.01774 5.21490 4.41030 1.46634 0.26236 1.17329 0.37012 10 1.82237 3.06921 0.29664 3.02434 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02379 5.20816 4.01507 1.46634 0.26236 0.93335 0.49961 11 2.94672 0.37451 2.75219 1.62926 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02051 5.19970 4.21450 1.46634 0.26236 1.75302 0.19025 12 3.30259 2.36680 3.00162 0.19879 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.01244 5.19062 4.99107 1.46634 0.26236 0.75360 0.63614 13 3.85238 0.12312 3.69122 2.66391 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.01333 5.20378 4.86043 1.46634 0.26236 0.82905 0.57352 14 0.06544 3.98995 3.67166 3.94200 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04525 5.20866 3.25006 1.46634 0.26236 0.83042 0.57247 15 1.81508 3.31258 0.35540 2.30402 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01153 5.17991 5.14370 1.46634 0.26236 2.25752 0.11050 16 2.73477 1.11958 3.32564 0.55735 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18930 5.17971 1.79076 1.46634 0.26236 2.26137 0.11005 17 2.05630 1.81741 3.49978 0.38651 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18808 1.80337 5.00391 0.17696 1.81902 0.06297 2.79635 18 4.16418 5.14053 0.06294 3.22881 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.37660 1.17741 5.16134 4.34673 0.01303 1.20397 0.35667 19 4.18956 4.93201 0.02917 5.05430 123 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01094 5.21406 5.21406 1.46634 0.26236 1.16455 0.37406 20 1.79392 1.57795 2.53524 0.60138 124 U - - _ 1.38629 1.38629 1.38629 1.38629 0.28752 1.40877 5.21437 0.49303 0.94360 1.03650 0.43803 21 0.09927 3.60524 3.20638 3.61866 131 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02548 4.82766 4.06543 1.05184 0.42970 1.10326 0.40315 22 3.12402 3.96172 0.10539 3.29646 133 G - - > 1.38629 1.38629 1.38629 1.38629 0.05371 3.41002 3.95029 0.30481 1.33660 1.66057 0.21076 23 0.26665 3.14901 1.92575 3.09234 135 A - - > 1.38629 1.38629 1.38629 1.38629 0.01121 5.18996 5.18996 1.46634 0.26236 0.94051 0.49500 24 1.74961 2.99112 0.35810 2.56491 136 G - - > 1.38629 1.38629 1.38629 1.38629 0.01108 5.20122 5.20122 1.46634 0.26236 1.11418 0.39777 25 3.25444 0.35867 2.90351 1.57040 137 C - - > 1.38629 1.38629 1.38629 1.38629 0.03222 5.20606 3.64125 1.46634 0.26236 0.53141 0.88619 26 0.41935 3.75000 1.23020 3.62035 138 A - - , 1.38629 1.38629 1.38629 1.38629 0.01272 5.19543 4.94843 1.46634 0.26236 0.83996 0.56515 27 1.28843 1.65704 1.16727 1.50336 139 g - - < 1.38629 1.38629 1.38629 1.38629 0.01352 5.20451 4.83563 1.46634 0.26236 1.40161 0.28263 28 2.16298 0.83444 2.32132 1.04198 140 c - - < 1.38629 1.38629 1.38629 1.38629 0.01106 5.20351 5.20351 1.46634 0.26236 1.67076 0.20838 29 1.76101 1.45679 1.66973 0.89931 141 u - - < 1.38629 1.38629 1.38629 1.38629 0.06883 2.79657 5.20351 0.17136 1.84846 1.30187 0.31749 30 1.97826 2.48479 0.32649 2.86661 143 G - - < 1.38629 1.38629 1.38629 1.38629 0.01104 5.20404 5.20596 1.46387 0.26310 1.58311 0.22984 31 0.84543 1.98061 1.07353 2.39861 145 a - - < 1.38629 1.38629 1.38629 1.38629 0.03537 5.20596 3.53133 1.46634 0.26236 0.69595 0.69035 32 3.09184 0.53996 3.14250 1.11281 146 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04208 5.18988 3.33449 1.46634 0.26236 2.05139 0.13760 33 2.66998 3.18700 3.57006 0.14932 147 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18833 1.79629 5.15936 2.29326 0.10640 0.58091 0.81959 34 1.52345 1.51355 1.72815 0.95633 171 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01115 5.19530 5.19530 1.46634 0.26236 0.36099 1.19398 35 1.36112 1.45991 1.57608 1.18880 172 u - - _ 1.38629 1.38629 1.38629 1.38629 0.39130 5.21583 1.14448 1.46634 0.26236 1.11899 0.39543 36 1.24826 1.57115 1.57797 1.20800 173 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03811 3.52376 4.84046 0.47026 0.98041 4.10591 0.01661 37 0.04096 4.48330 4.17649 4.30624 175 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01593 4.84046 4.84046 1.46634 0.26236 4.10591 0.01661 38 0.12996 3.14052 3.32402 3.15578 176 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07747 2.79368 4.31645 0.24088 1.54148 0.06471 2.76999 39 2.40411 1.36188 1.84275 0.70300 178 u - - > 1.38629 1.38629 1.38629 1.38629 0.02154 5.20255 4.14703 1.46634 0.26236 0.86181 0.54887 40 3.10352 0.57657 2.37527 1.20298 179 C - - > 1.38629 1.38629 1.38629 1.38629 0.06573 2.84570 5.19949 0.18025 1.80216 1.79936 0.18081 41 1.02874 1.82375 1.29455 1.57454 181 a - - > 1.38629 1.38629 1.38629 1.38629 0.01110 5.19950 5.19950 1.46634 0.26236 1.66081 0.21070 42 1.12896 2.50911 0.76747 2.03179 182 g - - > 1.38629 1.38629 1.38629 1.38629 0.01109 5.20032 5.20032 1.46634 0.26236 1.22606 0.34735 43 1.61877 1.68430 1.48986 0.93935 183 u - - > 1.38629 1.38629 1.38629 1.38629 0.01105 5.20434 5.20434 1.46634 0.26236 0.48955 0.94908 44 1.27812 2.32085 1.22282 1.11215 184 u - - , 1.38629 1.38629 1.38629 1.38629 0.07499 5.21617 2.70571 1.46634 0.26236 1.09861 0.40547 45 2.29023 3.19534 0.27053 2.35567 185 G - - , 1.38629 1.38629 1.38629 1.38629 0.34385 1.25463 5.15280 3.24010 0.03995 0.24500 1.52651 46 2.08875 4.07158 0.18089 3.70585 242 G - - , 1.38629 1.38629 1.38629 1.38629 0.12549 5.21012 2.18502 1.46634 0.26236 1.41332 0.27883 47 2.06375 2.40791 2.75050 0.32972 243 U - - , 1.38629 1.38629 1.38629 1.38629 0.01231 5.09694 5.09694 1.46634 0.26236 0.13011 2.10375 48 2.32745 0.60533 2.10867 1.44749 244 C - - , 1.38629 1.38629 1.38629 1.38629 0.01097 5.21131 5.21131 1.46634 0.26236 1.08014 0.41483 49 2.07443 1.76517 0.45468 2.68001 245 G - - < 1.38629 1.38629 1.38629 1.38629 0.01095 5.21306 5.21306 1.46634 0.26236 1.27271 0.32860 50 1.99266 0.77697 1.73250 1.48268 246 c - - < 1.38629 1.38629 1.38629 1.38629 0.02126 5.21307 4.16122 1.46634 0.26236 0.84086 0.56447 51 1.41468 2.60229 0.53732 2.31688 247 G - - < 1.38629 1.38629 1.38629 1.38629 0.04411 3.27896 5.20584 1.17849 0.36780 1.58787 0.22861 52 2.39981 3.28381 0.19210 3.06709 252 G - - < 1.38629 1.38629 1.38629 1.38629 0.01103 5.20584 5.20584 1.46634 0.26236 1.58787 0.22861 53 3.51899 4.78092 0.05105 4.44402 253 G - - < 1.38629 1.38629 1.38629 1.38629 0.01281 5.20584 4.92703 1.46634 0.26236 1.58787 0.22861 54 3.88302 3.86527 4.36852 0.05574 254 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01238 5.20407 4.98947 1.46634 0.26236 1.64468 0.21452 55 3.94116 3.80924 4.38635 0.05555 255 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01106 5.20279 5.20279 1.46634 0.26236 0.80678 0.59112 56 4.18233 0.05226 4.53041 3.69361 256 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01098 5.21064 5.21064 1.46634 0.26236 1.39035 0.28633 57 2.21443 3.96049 0.16778 3.64237 257 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01098 5.21064 5.21064 1.46634 0.26236 0.81548 0.58416 58 0.04771 4.19459 4.09294 4.21161 258 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01093 5.21487 5.21487 1.46634 0.26236 1.17538 0.36918 59 1.24127 2.48804 0.76788 1.80841 259 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01388 5.21487 4.78619 1.46634 0.26236 0.96078 0.48223 60 3.16916 2.17578 2.82573 0.24185 260 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02142 5.21326 4.15085 1.46634 0.26236 0.83410 0.56963 61 4.54467 0.06742 4.58065 3.11612 261 C - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.57800 4.62952 0.85750 0.55203 1.02635 0.44365 62 3.23163 0.22641 3.06073 2.15191 263 C - - > 1.38629 1.38629 1.38629 1.38629 0.01103 5.20569 5.20569 1.46634 0.26236 1.59320 0.22725 63 2.39877 0.75167 2.47854 1.03923 264 c - - > 1.38629 1.38629 1.38629 1.38629 0.01103 5.20569 5.20569 1.46634 0.26236 0.61876 0.77352 64 1.66879 1.89225 0.72534 1.73367 265 g - - > 1.38629 1.38629 1.38629 1.38629 0.01093 5.21470 5.21470 1.46634 0.26236 0.96461 0.47987 65 3.07987 0.55594 1.64805 1.67092 266 C - - > 1.38629 1.38629 1.38629 1.38629 0.03362 5.11863 3.60896 1.46634 0.26236 1.08315 0.41329 66 0.89984 1.68208 1.45730 1.74573 267 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01645 5.09571 4.58627 1.46634 0.26236 0.41851 1.07301 67 2.35074 0.91421 1.89296 1.04061 268 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01213 5.11168 5.11168 1.46634 0.26236 1.35991 0.29663 68 1.53585 1.80855 0.65496 2.28895 269 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01877 5.11168 4.37627 1.46634 0.26236 1.35991 0.29663 69 1.28489 2.14342 0.68735 2.27146 270 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01904 4.35862 5.10511 0.77467 0.61777 1.23870 0.34215 70 2.29223 0.59350 1.96105 1.58058 272 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01355 5.10770 4.90488 1.46634 0.26236 0.67664 0.70994 71 2.06119 1.23039 1.05873 1.45404 273 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01872 4.37895 5.11423 0.78217 0.61141 0.86429 0.54706 72 2.60097 0.46061 2.04940 1.79522 275 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02449 4.00639 5.11697 0.56457 0.84073 1.09861 0.40547 73 0.66584 2.40271 1.60883 1.63188 277 A - - : 1.38629 1.38629 1.38629 1.38629 0.15941 4.93038 1.96516 1.46634 0.26236 1.09861 0.40547 74 4.81586 0.02937 5.18582 4.18305 278 C - - : 1.38629 1.38629 1.38629 1.38629 0.01680 4.78777 4.78777 1.46634 0.26236 3.06334 0.04786 75 4.81586 0.02937 5.18582 4.18305 279 C - - : 1.38629 1.38629 1.38629 1.38629 0.01680 4.78777 4.78777 1.46634 0.26236 3.06334 0.04786 76 0.02219 5.13378 4.74090 4.91736 280 A - - : 1.38629 1.38629 1.38629 1.38629 0.00844 4.77940 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Met ACC bact-Met-r2-022416 STATES 245 NODES 66 CLEN 77 W 290 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 18:39:22 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Met-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Met-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Met-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Met-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5196 EFFN 5196.000000 CKSUM 3113436217 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.8081 0.71936 ECMLC 0.68093 -7.96826 1.35595 1600000 686414 0.001748 ECMGC 0.36348 -31.99785 -19.87844 1600000 32748 0.012214 ECMLI 0.61169 -8.63241 1.61665 1600000 633719 0.001894 ECMGI 0.36268 -29.96360 -17.91553 1600000 31606 0.012656 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 290 564 -17.269 -18.515 -0.618 -1.522 IL 1 1 2 1 4 21 39 291 566 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 40 291 566 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 157 - A - - MR 3 2 3 5 3 21 39 290 565 -18.060 -0.000 -16.378 1.980 -13.622 -4.171 -13.004 D 4 2 3 5 3 19 36 287 562 -18.250 -13.428 -0.000 IR 5 5 3 5 3 21 39 290 565 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 156 - C - - MR 6 5 3 8 3 20 38 289 564 -6.613 -0.015 -16.378 -12.278 1.980 -4.166 -11.691 D 7 5 3 8 3 19 36 287 562 -18.250 -13.428 -0.000 IR 8 8 3 8 3 20 38 289 564 -6.775 -0.016 -9.014 0.000 0.000 0.000 0.000 [ MATR 3 ] - 154 - C - - MR 9 8 3 11 3 19 37 288 563 -5.074 -0.104 -4.646 -14.687 2.000 -15.807 -12.847 D 10 8 3 11 3 19 36 287 562 -18.250 -0.026 -5.810 IR 11 11 3 11 3 21 38 288 563 -8.281 -0.006 -10.520 0.000 0.000 0.000 0.000 [ MATR 4 ] - 152 - A - - MR 12 11 3 14 5 21 37 287 562 -17.271 -0.039 -6.737 -5.832 -18.190 1.894 -4.407 -4.835 -2.309 D 13 11 3 14 5 16 33 285 560 -1.436 -8.303 -4.858 -0.761 -8.641 IR 14 14 3 14 5 18 34 286 561 -7.769 -5.857 -11.280 -0.033 -10.554 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 150 g c - - MP 15 14 3 19 6 20 36 286 561 -18.160 -18.099 -0.098 -16.876 -3.928 -17.551 -12.152 -10.793 -11.969 -0.338 -5.954 -10.851 -2.770 -3.198 -12.406 2.986 -12.652 2.698 -0.978 -11.826 -6.039 -10.934 ML 16 14 3 19 6 17 34 283 558 -12.519 -12.865 -7.579 -0.009 -12.715 -10.244 -7.940 -7.130 -8.963 1.995 MR 17 14 3 19 6 18 33 285 560 -15.280 -14.009 -2.483 -13.987 -0.285 -12.201 -4.597 0.205 1.181 -0.891 D 18 14 3 19 6 13 27 279 554 -9.606 -8.304 -4.101 -4.784 -4.801 -0.209 IL 19 19 5 19 6 16 32 285 560 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 16 33 285 560 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 149 G C - - MP 21 20 6 25 6 20 35 284 559 -18.076 -18.015 -0.008 -16.792 -7.599 -13.870 -15.868 -12.644 -17.641 -4.589 -17.404 -13.848 -1.349 -17.274 -13.999 3.910 -14.207 -5.566 -0.961 -14.298 -14.267 -16.526 ML 22 20 6 25 6 17 33 282 557 -12.519 -12.865 -7.579 -0.009 -12.715 -10.244 -5.899 -1.376 1.843 -6.490 MR 23 20 6 25 6 17 31 284 558 -16.355 -15.084 -0.965 -15.063 -1.037 -13.276 -0.846 1.465 -1.076 -2.256 D 24 20 6 25 6 13 27 278 553 -9.606 -8.304 -4.101 -4.784 -4.801 -0.209 IL 25 25 5 25 6 16 32 284 558 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 16 32 283 558 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 148 C G - - MP 27 26 6 31 6 19 33 282 557 -18.151 -18.090 -0.000 -16.867 -17.147 -17.542 -15.189 -15.395 -14.524 -3.805 -12.894 -14.687 3.876 -13.799 -14.618 -0.904 -14.748 -13.675 -0.494 -15.050 -10.596 -13.425 ML 28 26 6 31 6 17 32 281 556 -12.519 -12.865 -0.011 -7.274 -12.715 -10.244 -1.354 1.839 -6.605 -5.603 MR 29 26 6 31 6 16 30 283 558 -15.448 -14.177 -8.307 -14.155 -0.005 -12.369 -7.235 1.345 0.107 -1.412 D 30 26 6 31 6 13 27 277 552 -10.042 -8.741 -4.538 -5.220 -5.237 -0.151 IL 31 31 5 31 6 15 31 282 556 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 16 31 282 556 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 147 G C - - MP 33 32 6 37 6 17 31 280 555 -4.631 -18.106 -0.177 -7.303 -3.861 -17.557 -12.752 -11.432 -12.553 0.775 -13.176 -3.886 -3.456 -13.056 -12.918 3.105 -13.168 -9.071 2.282 -2.100 -10.445 -1.235 ML 34 32 6 37 6 15 29 279 554 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 15 29 282 557 -15.445 -14.174 -10.083 -14.152 -0.002 -12.366 0.907 1.085 -10.501 -8.838 D 36 32 6 37 6 13 26 277 552 -10.042 -8.741 -4.538 -5.220 -5.237 -0.151 IL 37 37 5 37 6 18 32 281 556 -0.587 -12.152 -1.583 -13.808 -14.584 -14.244 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 15 30 279 554 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 146 g c - - MP 39 38 6 43 6 17 30 278 553 -18.054 -17.993 -0.042 -5.123 -17.050 -17.445 -12.014 -4.455 -0.625 2.570 -7.535 -4.335 0.208 -5.834 -12.271 2.660 -12.518 -0.963 -2.447 -1.124 -2.412 -1.058 ML 40 38 6 43 6 14 27 278 553 -11.769 -12.115 -6.829 -2.747 -11.965 -0.249 -4.691 -0.870 -5.437 1.762 MR 41 38 6 43 6 14 28 281 556 -16.587 -15.316 -3.575 -15.294 -0.127 -13.508 -1.311 1.402 -8.583 -0.070 D 42 38 6 43 6 13 26 277 551 -10.042 -8.741 -1.718 -5.220 -5.237 -0.645 IL 43 43 5 43 6 15 29 278 553 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 15 29 278 552 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 145 c g - - MP 45 44 6 49 6 16 28 276 551 -4.766 -17.968 -0.054 -16.745 -17.024 -17.420 -0.494 -11.664 -11.881 1.155 -3.954 -10.017 2.242 -11.611 -4.435 1.818 -12.331 -2.819 1.402 -7.346 0.917 -5.987 ML 46 44 6 49 6 14 27 278 553 -13.861 -14.207 -8.921 -0.004 -14.057 -11.586 -9.979 -8.842 -11.266 1.999 MR 47 44 6 49 6 13 27 280 555 -2.956 -4.447 -2.142 -15.168 -0.740 -13.382 -1.051 1.680 -7.048 -1.710 D 48 44 6 49 6 13 26 277 552 -14.708 -13.406 -9.203 -0.041 -9.903 -5.311 IL 49 49 5 49 6 15 27 275 550 -10.567 -1.703 -0.532 -12.485 -13.261 -12.921 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 14 27 275 550 -8.431 -0.006 -11.942 -10.110 -11.216 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 143 G C - - MP 51 50 6 55 4 14 26 274 549 -6.504 -17.536 -0.022 -7.815 -12.150 -4.244 -11.975 0.765 -13.115 -12.586 -1.362 -1.105 -12.395 3.376 -12.650 1.191 -0.457 -11.841 -10.190 -10.934 ML 52 50 6 55 4 13 26 277 552 -0.316 -11.388 -2.356 -10.118 -3.065 1.682 -6.996 -0.592 MR 53 50 6 55 4 12 25 282 557 -13.748 -12.777 -9.578 -0.002 -9.680 -0.294 -10.541 1.670 D 54 50 6 55 4 11 24 277 552 -5.095 -4.776 -1.151 -1.047 IL 55 55 5 55 4 14 26 277 551 -0.586 -2.067 -3.394 -14.266 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 13 25 274 549 -1.002 -0.999 -11.472 0.000 0.000 0.000 0.000 [ MATL 12 ] 15 - U - - - ML 57 56 6 59 3 12 24 272 547 -18.281 -0.000 -16.935 -5.665 -14.037 -16.544 1.993 D 58 56 6 59 3 11 24 281 556 -0.089 -11.466 -4.065 IL 59 59 3 59 3 13 26 281 556 -0.199 -2.958 -14.800 0.000 0.000 0.000 0.000 [ MATL 13 ] 25 - A - - - ML 60 59 3 62 2 11 23 271 546 -19.035 -0.000 1.735 -2.701 -1.931 -1.975 D 61 59 3 62 2 10 22 270 545 -10.490 -0.001 IL 62 62 3 62 2 11 23 271 546 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 10 22 270 545 [ BEGR 47 ] - - - - - - S 64 63 1 65 3 0 5 237 512 -18.385 -0.007 -7.611 IL 65 65 2 65 3 1 7 243 518 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 97 - A - - - ML 66 65 2 68 3 2 5 237 512 -18.377 -0.000 -17.032 1.123 -2.779 0.521 -2.053 D 67 65 2 68 3 0 5 261 536 -12.213 -7.726 -0.007 IL 68 68 3 68 3 1 6 242 517 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 98 - G - - - ML 69 68 3 71 3 1 4 236 511 -2.542 -0.272 -17.032 -2.650 -5.745 1.432 0.169 D 70 68 3 71 3 0 5 261 536 -0.022 -7.726 -6.605 IL 71 71 3 71 3 1 7 261 536 -0.097 -3.947 -17.219 0.000 0.000 0.000 0.000 [ MATL 50 ] 119 - G - - - ML 72 71 3 74 3 1 3 26 44 -18.385 -0.052 -4.827 -1.353 -13.494 1.789 -2.701 D 73 71 3 74 3 0 2 31 50 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 4 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 120 - U - - - ML 75 74 3 77 3 1 2 25 43 -18.333 -0.003 -9.168 -1.816 -5.269 -3.997 1.859 D 76 74 3 77 3 0 1 25 43 -14.980 -0.002 -9.372 IL 77 77 3 77 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 121 - C - - - ML 78 77 3 80 5 1 3 24 42 -17.315 -0.005 -17.131 -8.258 -18.235 -2.801 1.821 -3.888 -1.972 D 79 77 3 80 5 0 0 24 41 -8.650 -0.049 -7.911 -6.286 -6.198 IL 80 80 3 80 5 1 1 27 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 122 140 G C - - MP 81 80 3 85 6 2 3 23 41 -18.242 -18.181 -0.000 -14.089 -17.238 -14.316 -12.297 -9.695 -12.122 1.573 -13.263 -12.736 1.670 -12.799 -12.542 3.022 -12.798 -0.269 -2.308 -11.990 -10.339 -0.541 ML 82 80 3 85 6 1 1 25 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 23 38 -11.459 -10.188 -6.097 -10.166 -0.029 -8.380 -4.997 -6.646 1.978 -5.737 D 84 80 3 85 6 0 0 23 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 26 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 25 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 123 139 c g - - MP 87 86 6 91 6 2 4 21 39 -18.242 -18.181 -0.000 -16.958 -17.237 -17.632 -12.517 -0.790 -12.515 -0.661 -8.535 -13.351 2.340 -0.053 -12.388 1.545 -12.896 1.735 0.984 -6.394 -1.593 -2.382 ML 88 86 6 91 6 1 1 23 38 -6.704 -7.050 -1.765 -0.658 -6.900 -4.430 0.042 -0.844 0.677 -0.296 MR 89 86 6 91 6 1 1 21 36 -11.459 -10.188 -6.097 -10.166 -0.029 -8.380 1.981 -6.216 -5.608 -5.822 D 90 86 6 91 6 0 0 20 35 -9.555 -8.253 -4.050 -4.732 -4.750 -0.217 IL 91 91 5 91 6 1 1 24 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 23 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 124 138 G C - - MP 93 92 6 97 6 2 4 19 37 -18.242 -18.181 -0.000 -11.870 -17.237 -17.632 -9.997 0.953 -12.335 0.309 -7.439 -10.062 1.294 -12.261 -12.421 3.087 -4.523 -9.188 0.678 -12.363 -2.246 -6.373 ML 94 92 6 97 6 1 1 20 36 -6.704 -7.050 -0.825 -1.459 -6.900 -4.430 0.042 -0.844 0.677 -0.296 MR 95 92 6 97 6 1 1 19 35 -11.459 -10.188 -6.097 -10.166 -5.300 -0.062 -4.997 -6.646 1.978 -5.737 D 96 92 6 97 6 0 0 18 34 -9.555 -8.253 -4.050 -4.732 -4.750 -0.217 IL 97 97 5 97 6 1 1 22 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 21 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 125 137 G C - - MP 99 98 6 103 6 2 3 17 35 -18.242 -18.181 -0.000 -16.957 -17.237 -17.632 -15.142 -12.835 -15.706 1.398 -17.087 -14.539 -3.956 -15.708 -14.108 3.606 -14.464 -6.878 0.161 -14.749 -14.143 -14.364 ML 100 98 6 103 6 1 1 18 34 -7.805 -8.151 -0.328 -2.560 -8.001 -5.530 -1.176 1.428 -1.973 -0.707 MR 101 98 6 103 6 1 1 19 35 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 16 34 -14.070 -12.768 -8.565 -9.247 -0.062 -4.732 IL 103 103 5 103 6 1 1 20 35 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 19 35 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 126 136 G C - - MP 105 104 6 109 4 2 2 15 33 -4.539 -6.131 -0.085 -16.092 -16.161 -12.799 -18.429 -3.470 -17.800 -13.966 -12.101 -17.909 -14.167 3.992 -14.361 -10.729 -12.463 -14.431 -14.549 -17.491 ML 106 104 6 109 4 1 1 15 33 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 16 34 -9.477 -8.506 -6.373 -0.024 1.981 -6.216 -5.608 -5.822 D 108 104 6 109 4 0 0 15 33 -5.046 -4.727 -2.743 -0.354 IL 109 109 5 109 4 1 1 14 32 -9.804 -10.488 -0.003 -12.973 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 14 32 -6.973 -0.013 -9.673 0.000 0.000 0.000 0.000 [ MATL 58 ] 128 - U - - - ML 111 110 6 113 3 1 1 13 31 -18.380 -0.000 -17.034 -4.617 -14.080 -16.461 1.985 D 112 110 6 113 3 0 0 15 33 -11.594 -0.043 -5.117 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 129 - U - - - ML 114 113 3 116 3 1 1 11 30 -18.385 -0.000 -17.039 -12.357 -6.503 -5.117 1.985 D 115 113 3 116 3 0 0 17 36 -6.814 -2.327 -0.337 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 130 - C - - - ML 117 116 3 119 3 1 1 10 29 -18.385 -0.000 -17.039 -6.218 1.995 -14.024 -12.749 D 118 116 3 119 3 0 0 16 35 -6.814 -2.327 -0.337 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 131 - G - - - ML 120 119 3 122 3 1 1 9 27 -18.385 -0.000 -17.039 0.752 -13.401 1.211 -13.272 D 121 119 3 122 3 0 0 15 34 -6.814 -2.327 -0.337 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 132 - A - - - ML 123 122 3 125 3 1 1 8 26 -18.385 -0.000 -17.039 1.989 -14.185 -6.679 -5.683 D 124 122 3 125 3 0 0 14 33 -6.814 -2.327 -0.337 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 133 - g - - - ML 126 125 3 128 3 1 1 6 24 -18.385 -0.000 -17.039 0.545 -2.008 0.638 -0.441 D 127 125 3 128 3 0 0 13 31 -6.814 -2.327 -0.337 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 134 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -6.620 -1.065 -6.377 1.807 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 0 6 86 155 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 188 0 6 86 155 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 0 62 132 -0.154 -16.377 -3.309 -16.424 [ MATP 18 ] 26 59 G C - - MP 136 135 1 140 6 2 2 61 131 -18.093 -18.033 -0.285 -3.531 -3.435 -17.484 -15.811 -12.672 -17.344 -4.846 -17.173 -13.896 -3.416 -17.016 -14.017 3.957 -14.233 -2.210 -3.297 -14.335 -5.453 -16.181 ML 137 135 1 140 6 1 1 59 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 1 1 65 135 -16.350 -15.079 -10.988 -15.057 -0.001 -13.271 -11.439 1.440 -12.571 0.363 D 139 135 1 140 6 0 0 61 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 61 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 61 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 27 58 C G - - MP 142 141 6 146 6 2 2 58 128 -17.809 -6.093 -0.127 -6.154 -5.536 -4.878 -14.866 -15.148 -4.090 -11.385 -12.534 -14.328 3.911 -4.218 -14.287 -11.357 -14.407 -13.553 -0.339 -14.700 -4.230 -13.089 ML 143 141 6 146 6 1 1 58 124 -15.440 -15.786 -10.501 -0.001 -15.636 -13.166 -10.269 -9.684 0.334 1.453 MR 144 141 6 146 6 1 1 64 134 -17.216 -15.945 -5.073 -15.923 -0.044 -14.137 -3.257 0.459 0.300 0.368 D 145 141 6 146 6 0 0 61 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 58 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 56 126 -7.630 -0.011 -11.141 -9.309 -10.415 0.000 0.000 0.000 0.000 [ MATP 20 ] 28 56 U A - - MP 148 147 6 152 6 2 2 55 125 -17.716 -17.655 -0.000 -16.432 -16.712 -17.107 -14.770 -15.040 -14.090 -11.278 -5.048 -14.237 -8.156 -13.358 -6.139 -3.727 -14.314 -13.424 3.859 -14.608 0.444 -12.995 ML 149 147 6 152 6 1 1 57 123 -15.620 -15.967 -0.728 -1.336 -15.816 -13.346 -7.827 -1.092 0.140 1.278 MR 150 147 6 152 6 1 1 64 133 -17.296 -16.025 -11.933 -16.003 -0.567 -1.623 -3.512 -2.354 0.778 1.002 D 151 147 6 152 6 0 0 61 131 -16.959 -15.658 -11.455 -12.137 -12.154 -0.001 IL 152 152 5 152 6 1 1 57 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 57 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 29 55 C G - - MP 154 153 6 158 4 2 2 53 123 -17.051 -17.258 -0.076 -4.285 -14.880 -15.162 -14.198 -2.358 -4.101 -4.799 3.832 -13.464 -14.302 -11.371 -14.421 -13.567 -1.503 -14.714 0.156 -13.103 ML 155 153 6 158 4 1 1 57 117 -11.373 -0.007 -8.122 -10.285 0.249 -8.572 1.488 -8.248 MR 156 153 6 158 4 1 1 63 133 -14.755 -13.784 -3.794 -0.108 -1.036 -8.316 0.954 0.653 D 157 153 6 158 4 0 0 61 131 -14.192 -13.873 -1.815 -0.483 IL 158 158 5 158 4 1 1 56 123 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 1 56 116 -0.503 -1.765 -12.712 0.000 0.000 0.000 0.000 [ MATL 22 ] 30 - A - - - ML 160 159 6 162 3 1 1 44 109 -4.884 -0.052 -9.606 2.000 -13.941 -13.206 -13.273 D 161 159 6 162 3 0 0 62 132 -2.548 -5.797 -0.302 IL 162 162 3 162 3 1 1 51 107 -0.545 -1.669 -13.497 0.000 0.000 0.000 0.000 [ MATL 23 ] 35 - G - - - ML 163 162 3 165 3 1 1 22 92 -18.095 -0.000 -16.749 -1.939 -5.892 1.888 -5.536 D 164 162 3 165 3 0 0 63 133 -1.938 -7.491 -0.447 IL 165 165 3 165 3 1 1 68 138 -0.380 -2.111 -13.501 0.000 0.000 0.000 0.000 [ MATL 24 ] 41 - u - - - ML 166 165 3 168 3 1 1 15 31 -18.178 -0.323 -2.319 -3.379 0.805 -1.500 0.851 D 167 165 3 168 3 0 0 11 30 -16.901 -10.160 -0.001 IL 168 168 3 168 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 42 - U - - - ML 169 168 3 171 3 1 1 14 30 -3.757 -0.111 -16.509 -1.658 -0.588 -3.417 1.548 D 170 168 3 171 3 0 0 10 28 -18.101 -0.903 -1.103 IL 171 171 3 171 3 1 1 14 30 -2.674 -0.246 -11.742 0.000 0.000 0.000 0.000 [ MATL 26 ] 45 - G - - - ML 172 171 3 174 3 1 1 10 28 -18.162 -0.000 -16.816 -5.317 -14.460 1.991 -13.433 D 173 171 3 174 3 0 0 9 27 -16.998 -6.272 -0.019 IL 174 174 3 174 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 46 - G - - - ML 175 174 3 177 3 1 1 9 27 -18.165 -0.000 -16.819 -5.737 -14.463 1.993 -13.436 D 176 174 3 177 3 0 0 8 26 -16.980 -4.939 -0.048 IL 177 177 3 177 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 47 - U - - - ML 178 177 3 180 3 1 1 7 26 -4.155 -0.512 -2.045 -4.824 -0.073 -10.858 1.591 D 179 177 3 180 3 0 0 5 23 -16.932 -12.445 -0.000 IL 180 180 3 180 3 1 1 7 26 -8.720 -0.004 -11.420 0.000 0.000 0.000 0.000 [ MATL 29 ] 49 - U - - - ML 181 180 3 183 3 1 1 6 25 -17.773 -0.060 -4.624 -4.653 -0.651 -1.411 1.559 D 182 180 3 183 3 0 0 5 23 -18.272 -0.292 -2.450 IL 183 183 3 183 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 50 - A - - - ML 184 183 3 186 2 1 1 1 1 * 0.000 1.954 -6.518 -3.134 -13.207 D 185 183 3 186 2 0 0 0 0 * 0.000 IL 186 186 3 186 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 187 186 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 188 134 1 189 3 0 0 68 135 -18.385 -0.000 -17.039 IL 189 189 2 189 3 1 1 70 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 60 - G - - - ML 190 189 2 192 5 1 1 68 135 -17.318 -0.023 -5.972 -17.345 -18.237 0.915 -13.225 1.061 -5.154 D 191 189 2 192 5 0 0 66 133 -4.959 -0.803 -4.221 -2.596 -2.508 IL 192 192 3 192 5 1 1 68 135 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 61 96 c g - - MP 193 192 3 197 6 2 2 67 134 -18.224 -18.163 -0.064 -4.522 -17.219 -17.614 -6.771 -1.003 -11.764 -0.053 -5.708 -3.943 2.907 -6.450 -3.506 0.699 -12.256 -0.028 1.273 -8.114 0.863 -10.626 ML 194 192 3 197 6 1 1 62 129 -13.161 -13.507 -8.221 -0.006 -13.357 -10.886 -6.439 -6.219 0.319 1.447 MR 195 192 3 197 6 1 1 65 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 3 197 6 0 0 61 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 67 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 66 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 62 95 a u - - MP 199 198 6 203 6 2 2 65 132 -18.159 -18.099 -0.076 -16.875 -4.289 -17.550 -12.410 -11.802 -12.368 2.854 -11.538 -13.148 1.990 -9.735 -12.345 1.784 -12.808 -2.501 -0.455 -12.467 -1.214 -6.282 ML 200 198 6 203 6 1 1 61 128 -15.036 -15.382 -2.438 -0.295 -15.232 -12.761 1.868 -9.365 -1.529 -9.165 MR 201 198 6 203 6 1 1 62 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 59 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 65 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 64 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 63 94 g c - - MP 205 204 6 209 6 2 2 64 130 -18.101 -18.040 -0.000 -16.817 -17.097 -17.492 -14.249 -14.138 -13.902 0.551 -12.472 -14.311 2.250 -13.284 -13.898 2.935 -14.190 -11.936 0.931 -14.263 -2.169 -12.661 ML 206 204 6 209 6 1 1 59 126 -14.743 -15.089 -3.220 -9.498 -14.939 -0.166 -1.262 -10.071 1.840 -9.166 MR 207 204 6 209 6 1 1 58 125 -15.285 -14.014 -9.923 -13.992 -9.126 -0.004 -8.560 -10.331 1.998 -9.319 D 208 204 6 209 6 0 0 58 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 63 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 63 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 64 93 G C - - MP 211 210 6 215 6 2 2 62 128 -18.109 -4.806 -0.053 -16.825 -17.105 -17.500 -13.166 -11.980 -12.908 -1.580 -2.798 -10.190 2.364 -13.144 -13.244 3.334 -13.471 -2.577 -3.780 -12.876 -4.538 -11.847 ML 212 210 6 215 6 1 1 60 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 6 1 1 60 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 214 210 6 215 6 0 0 57 124 -18.813 -17.511 -13.308 -13.990 -14.008 -0.000 IL 215 215 5 215 6 1 1 61 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 58 125 -9.191 -7.279 -12.702 -10.870 -0.013 0.000 0.000 0.000 0.000 [ MATP 38 ] 65 91 a u - - MP 217 216 6 221 4 2 2 60 126 -17.285 -6.745 -0.058 -5.058 -4.740 -0.514 0.448 2.749 -12.974 -12.439 -0.524 -4.266 0.205 1.747 -12.527 -0.269 -8.305 -8.560 0.090 -5.680 ML 218 216 6 221 4 1 1 59 126 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 219 216 6 221 4 1 1 58 125 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 220 216 6 221 4 0 0 57 124 -14.675 -1.927 -12.372 -0.441 IL 221 221 5 221 4 1 1 60 127 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 1 60 127 -0.587 -9.403 -1.588 0.000 0.000 0.000 0.000 [ MATL 39 ] 66 - C - - - ML 223 222 6 225 3 1 1 58 124 -18.137 -0.021 -6.138 -1.083 1.034 -11.461 0.566 D 224 222 6 225 3 0 0 55 122 -17.143 -12.656 -0.000 IL 225 225 3 225 3 1 1 58 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 67 - U - - - ML 226 225 3 228 3 1 1 57 123 -4.904 -0.054 -8.351 -15.426 -14.032 -17.024 2.000 D 227 225 3 228 3 0 0 55 122 -17.248 -2.385 -0.307 IL 228 228 3 228 3 1 1 63 130 -0.453 -9.162 -1.900 0.000 0.000 0.000 0.000 [ MATL 41 ] 73 - c - - - ML 229 228 3 231 3 1 1 55 121 -18.120 -0.000 -16.774 -0.175 0.427 -0.177 -0.175 D 230 228 3 231 3 0 0 56 122 -17.228 -12.741 -0.000 IL 231 231 3 231 3 1 1 56 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 74 - u - - - ML 232 231 3 234 3 1 1 54 120 -18.120 -0.000 -16.774 0.059 -0.177 -0.177 0.250 D 233 231 3 234 3 0 0 56 122 -17.228 -12.741 -0.000 IL 234 234 3 234 3 1 1 55 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 75 - u - - - ML 235 234 3 237 3 1 1 53 119 -3.718 -0.114 -16.774 -0.175 -0.177 -0.177 0.428 D 236 234 3 237 3 0 0 56 122 -2.126 -6.148 -0.402 IL 237 237 3 237 3 1 1 61 128 -0.398 -2.052 -14.535 0.000 0.000 0.000 0.000 [ MATL 44 ] 83 - A - - - ML 238 237 3 240 3 1 1 19 48 -8.540 -0.004 -16.843 1.956 -4.634 -4.636 -4.633 D 239 237 3 240 3 0 0 24 53 -3.429 -3.581 -0.280 IL 240 240 3 240 3 1 1 27 57 -0.898 -1.111 -10.763 0.000 0.000 0.000 0.000 [ MATL 45 ] 87 - A - - - ML 241 240 3 243 2 1 1 1 1 * 0.000 1.596 -0.297 -4.769 -2.989 D 242 240 3 243 2 0 0 0 0 * 0.000 IL 243 243 3 243 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 244 243 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Met ACC bact-Met-r2-022416 LENG 77 MAXL 287 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 18:39:22 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Met-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Met-r2-022416.sto NSEQ 5196 EFFN 8.319935 CKSUM 3113436217 STATS LOCAL MSV -8.4189 0.71936 STATS LOCAL VITERBI -9.4458 0.71936 STATS LOCAL FORWARD -3.0622 0.71936 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50514 1.34485 1.25780 1.45604 1.38629 1.38629 1.38629 1.38629 0.01509 4.89454 4.89454 1.46634 0.26236 0.00000 * 1 1.92270 2.58837 0.37807 2.37019 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.07185 4.89454 2.78318 1.46634 0.26236 1.09861 0.40547 2 2.72868 3.07839 0.17916 2.94330 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02018 4.84657 4.41265 1.46634 0.26236 0.36910 1.17557 3 3.45427 0.23211 2.84981 2.13983 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01517 4.88924 4.88924 1.46634 0.26236 1.54965 0.23867 4 1.77147 2.35170 0.70043 1.43407 4 g - - ( 1.38629 1.38629 1.38629 1.38629 0.11236 3.18826 2.73291 1.14978 0.38083 1.54965 0.23867 5 1.25921 1.94511 0.91352 1.76003 8 g - - ( 1.38629 1.38629 1.38629 1.38629 0.02100 4.83012 4.35829 1.46634 0.26236 1.73760 0.19352 6 1.63043 1.28402 1.48920 1.19839 9 u - - ( 1.38629 1.38629 1.38629 1.38629 0.04645 3.28509 4.83466 0.28939 1.38120 1.70569 0.20046 7 1.75757 2.36327 0.45856 2.29036 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05133 3.24765 4.49495 1.15366 0.37904 0.20821 1.67150 8 3.52911 3.50107 4.17608 0.07780 15 U - - , 1.38629 1.38629 1.38629 1.38629 0.07203 2.77598 4.93241 1.88803 0.16413 1.24374 0.34010 9 0.31774 2.58187 2.41257 2.23504 25 A - - , 1.38629 1.38629 1.38629 1.38629 0.10501 4.93242 2.38083 1.46634 0.26236 0.85945 0.55060 10 3.07275 3.82758 0.09735 3.70073 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.09682 4.84698 2.47181 1.46634 0.26236 2.69648 0.06982 11 3.33721 0.21433 3.24762 2.13268 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.05967 4.76731 3.00744 1.46634 0.26236 2.70970 0.06888 12 3.46853 2.42413 3.30519 0.17009 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.01779 4.73116 4.73116 1.46634 0.26236 3.35885 0.03539 13 2.96496 0.32419 2.91444 1.76557 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.01779 4.73116 4.73116 1.46634 0.26236 1.73896 0.19323 14 0.04107 4.51122 4.14195 4.31565 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08597 2.61892 4.65657 1.00077 0.45822 1.25473 0.33569 15 2.46025 3.71099 0.15573 3.37133 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06335 2.93211 4.81549 1.23198 0.34491 2.82284 0.06128 16 2.08547 1.00999 2.22652 0.90727 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.19969 4.81643 1.75493 1.46634 0.26236 2.92634 0.05508 17 1.95546 1.73019 2.60605 0.49853 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08077 2.68972 4.63642 0.38551 1.13975 0.65552 0.73225 18 3.75459 4.90895 0.04368 4.42673 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01647 4.80755 4.80755 1.46634 0.26236 2.78965 0.06341 19 3.81165 4.93898 0.04181 4.45073 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01644 4.80930 4.80930 1.46634 0.26236 2.54306 0.08189 20 2.70269 1.55139 3.32117 0.37846 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.30319 2.91416 1.57365 0.27637 1.42102 2.94498 0.05404 21 2.17650 1.77094 2.24853 0.49293 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05319 4.59157 3.17819 1.46634 0.26236 0.24365 1.53138 22 0.08586 3.94355 3.17375 3.86074 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07288 3.22843 3.48466 0.97559 0.47316 1.19122 0.36219 23 2.19193 3.02348 0.26587 2.61550 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.10073 4.85850 2.42969 1.46634 0.26236 0.46224 0.99390 24 0.28058 3.27788 1.93300 2.77684 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.02631 4.01625 4.83550 0.72765 0.65980 1.14944 0.38099 25 2.31955 3.04364 0.23406 2.76931 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.01550 4.86802 4.86802 1.46634 0.26236 0.18018 1.80251 26 3.47116 0.16139 3.46492 2.44553 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.01447 4.93585 4.93585 1.46634 0.26236 1.09861 0.40547 27 0.79441 3.44448 0.75965 3.02826 60 g - - , 1.38629 1.38629 1.38629 1.38629 0.01447 4.93585 4.93585 1.46634 0.26236 1.09861 0.40547 28 1.81026 1.07562 1.59743 1.22798 61 c - - < 1.38629 1.38629 1.38629 1.38629 0.01447 4.93585 4.93585 1.46634 0.26236 1.09861 0.40547 29 1.20320 1.43049 1.25841 1.73460 62 a - - < 1.38629 1.38629 1.38629 1.38629 0.05652 4.93586 3.04143 1.46634 0.26236 1.09861 0.40547 30 1.94255 1.34386 0.91390 1.63544 63 g - - < 1.38629 1.38629 1.38629 1.38629 0.05404 4.89443 3.09850 1.46634 0.26236 2.15742 0.12287 31 2.13128 1.37655 0.67607 2.11816 64 G - - < 1.38629 1.38629 1.38629 1.38629 0.04628 4.85608 3.28479 1.46634 0.26236 2.61549 0.07594 32 1.14152 1.73621 1.27252 1.49453 65 a - - < 1.38629 1.38629 1.38629 1.38629 0.04964 4.82596 3.20865 1.46634 0.26236 2.86144 0.05889 33 1.81562 0.84720 2.86228 1.04551 66 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02859 4.79303 3.91721 1.46634 0.26236 3.06927 0.04757 34 3.92589 3.70040 4.47389 0.05746 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04762 3.33450 4.52125 1.09017 0.40971 1.56103 0.23562 35 1.34162 1.32046 1.60195 1.30910 73 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04370 4.81041 3.36355 1.46634 0.26236 2.96586 0.05289 36 1.26348 1.56576 1.59352 1.18681 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01687 4.78358 4.78358 1.46634 0.26236 1.41489 0.27833 37 1.33373 1.56091 1.59755 1.12648 75 u - - _ 1.38629 1.38629 1.38629 1.38629 0.11905 2.26169 4.82059 1.33515 0.30533 1.92184 0.15822 38 0.10237 3.52077 3.37065 3.40051 83 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02952 3.85672 4.83385 0.75590 0.63410 1.99636 0.14598 39 0.40244 1.75950 2.83066 2.30048 87 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05481 3.09098 4.84368 0.89157 0.52765 1.77583 0.18554 40 1.68025 1.46657 1.35835 1.12125 91 u - - > 1.38629 1.38629 1.38629 1.38629 0.04628 3.28479 4.85608 0.37378 1.16515 2.61549 0.07594 41 2.31401 0.74359 1.30670 1.86420 93 c - - > 1.38629 1.38629 1.38629 1.38629 0.02043 4.85608 4.38675 1.46634 0.26236 0.72106 0.66600 42 1.82345 1.00081 1.20173 1.77034 94 c - - > 1.38629 1.38629 1.38629 1.38629 0.02478 4.89462 4.07537 1.46634 0.26236 2.15455 0.12325 43 2.00477 1.35394 1.27155 1.11875 95 u - - > 1.38629 1.38629 1.38629 1.38629 0.01523 4.88508 4.88508 1.46634 0.26236 0.49588 0.93914 44 1.53658 1.77907 0.87221 1.61916 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.01467 4.92235 4.92235 1.46634 0.26236 0.76337 0.62753 45 0.76325 2.42482 1.18048 1.97886 97 a - - , 1.38629 1.38629 1.38629 1.38629 0.01454 4.93154 4.93154 1.46634 0.26236 0.81130 0.58749 46 2.14091 2.86043 0.52214 1.46119 98 G - - , 1.38629 1.38629 1.38629 1.38629 0.17735 1.86223 4.93586 2.71458 0.06853 1.09861 0.40547 47 2.14229 3.51222 0.23427 2.78649 119 G - - , 1.38629 1.38629 1.38629 1.38629 0.04504 4.93587 3.30064 1.46634 0.26236 1.09861 0.40547 48 2.41833 2.90328 3.22954 0.20271 120 U - - , 1.38629 1.38629 1.38629 1.38629 0.01639 4.90574 4.72697 1.46634 0.26236 0.32917 1.27125 49 2.75073 0.23478 3.41564 2.18463 121 C - - , 1.38629 1.38629 1.38629 1.38629 0.01728 4.93445 4.61116 1.46634 0.26236 0.98305 0.46868 50 1.61444 1.83484 0.63273 2.20529 122 G - - < 1.38629 1.38629 1.38629 1.38629 0.01455 4.93311 4.92796 1.46634 0.26236 1.21837 0.35057 51 1.79848 1.22945 1.22331 1.39537 123 g - - < 1.38629 1.38629 1.38629 1.38629 0.01451 4.93307 4.93307 1.46634 0.26236 1.21989 0.34993 52 1.59395 1.87663 0.70301 1.90594 124 g - - < 1.38629 1.38629 1.38629 1.38629 0.01451 4.93307 4.93307 1.46634 0.26236 1.21989 0.34993 53 1.71225 2.92774 0.39514 2.38126 125 G - - < 1.38629 1.38629 1.38629 1.38629 0.01451 4.93307 4.93307 1.46634 0.26236 1.21989 0.34993 54 3.51927 4.66979 0.04995 4.63313 126 G - - < 1.38629 1.38629 1.38629 1.38629 0.05194 3.13715 4.93308 0.30421 1.33830 1.21989 0.34993 55 3.34016 3.42512 4.06757 0.08894 128 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01451 4.93307 4.93307 1.46634 0.26236 0.89660 0.52417 56 3.36689 3.21931 3.67963 0.10504 129 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01447 4.93581 4.93581 1.46634 0.26236 1.10033 0.40461 57 4.18988 0.04784 4.72406 3.78607 130 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01447 4.93581 4.93581 1.46634 0.26236 1.10033 0.40461 58 0.88853 3.59077 0.64716 3.27983 131 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01447 4.93581 4.93581 1.46634 0.26236 1.10033 0.40461 59 0.04190 4.53594 4.13309 4.24865 132 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01447 4.93581 4.93581 1.46634 0.26236 1.10033 0.40461 60 1.09452 2.13075 1.15808 1.45903 133 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01447 4.93581 4.93581 1.46634 0.26236 1.10033 0.40461 61 3.05083 2.11852 3.53741 0.21892 134 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 3.95505 4.93582 0.63255 0.75765 1.10033 0.40461 62 4.66098 0.06185 4.54236 3.22208 136 C - - > 1.38629 1.38629 1.38629 1.38629 0.01748 4.93581 4.59081 1.46634 0.26236 1.10033 0.40461 63 2.53978 0.44063 2.74431 1.54555 137 C - - > 1.38629 1.38629 1.38629 1.38629 0.01456 4.93285 4.92707 1.46634 0.26236 0.88380 0.53309 64 2.11255 0.67105 1.72351 1.66358 138 C - - > 1.38629 1.38629 1.38629 1.38629 0.01447 4.93577 4.93577 1.46634 0.26236 1.10226 0.40365 65 1.61737 1.55714 1.15562 1.28743 139 g - - > 1.38629 1.38629 1.38629 1.38629 0.01447 4.93577 4.93577 1.46634 0.26236 1.09136 0.40911 66 2.61011 0.74306 1.73673 1.29200 140 c - - > 1.38629 1.38629 1.38629 1.38629 0.04142 3.56325 4.40402 0.44731 1.01984 1.09861 0.40547 67 2.50006 0.61365 2.36545 1.26357 143 C - - ) 1.38629 1.38629 1.38629 1.38629 0.05326 3.75623 3.55819 0.53360 0.88307 1.30888 0.31488 68 1.44880 1.56351 1.06915 1.54906 145 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01491 4.90927 4.90290 1.46634 0.26236 0.52167 0.90024 69 2.09741 0.98946 1.70724 1.12676 146 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01455 4.93071 4.93071 1.46634 0.26236 0.77879 0.61426 70 1.59759 0.75977 2.17986 1.52886 147 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02227 4.93485 4.21067 1.46634 0.26236 1.10074 0.40440 71 2.30046 2.83253 0.22814 3.10314 148 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01460 4.92717 4.92717 1.46634 0.26236 1.39714 0.28409 72 2.92397 0.22794 2.87408 2.36831 149 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01460 4.92722 4.92722 1.46634 0.26236 1.40193 0.28252 73 2.57608 0.72766 2.42021 1.04416 150 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02692 4.92297 3.94847 1.46634 0.26236 0.67775 0.70878 74 0.16479 3.14536 3.21874 2.67550 152 A - - : 1.38629 1.38629 1.38629 1.38629 0.09578 3.43828 2.82656 0.52905 0.88956 0.56233 0.84369 75 4.04854 0.06289 4.54222 3.41556 154 C - - : 1.38629 1.38629 1.38629 1.38629 0.02867 4.01196 4.58876 0.89565 0.52483 2.08257 0.13308 76 3.56503 0.10282 3.75078 3.08089 156 C - - : 1.38629 1.38629 1.38629 1.38629 0.02054 4.58876 4.58876 1.46634 0.26236 2.08257 0.13308 77 0.07650 3.99386 3.40596 3.81471 157 A - - : 1.38629 1.38629 1.38629 1.38629 0.01032 4.57854 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Phe ACC bact-Phe-r2-022416 STATES 242 NODES 65 CLEN 76 W 1088 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 18:43:19 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Phe-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Phe-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Phe-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Phe-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6546 EFFN 6546.000000 CKSUM 2778915989 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.2108 0.71894 ECMLC 0.67336 -7.59228 1.64295 1600000 602405 0.001992 ECMGC 0.36139 -32.48753 -20.83297 1600000 26992 0.014819 ECMLI 0.65419 -7.20959 2.17095 1600000 555013 0.002162 ECMGI 0.37325 -29.39448 -18.24233 1600000 25694 0.015568 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1088 2319 -17.603 -18.848 -0.821 -1.205 IL 1 1 2 1 4 23 45 1091 2322 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 46 1092 2323 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 208 - A - - MR 3 2 3 5 3 24 46 1091 2321 -18.190 -0.000 -16.508 2.000 -13.819 -13.082 -13.151 D 4 2 3 5 3 21 43 1088 2318 -18.900 -14.078 -0.000 IR 5 5 3 5 3 24 46 1091 2322 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 207 - C - - MR 6 5 3 8 3 23 45 1090 2320 -18.190 -0.000 -16.508 -14.836 2.000 -15.974 -12.983 D 7 5 3 8 3 21 43 1088 2318 -18.900 -14.078 -0.000 IR 8 8 3 8 3 23 45 1090 2321 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 206 - C - - MR 9 8 3 11 3 22 44 1089 2319 -18.190 -0.000 -16.508 -14.836 2.000 -15.974 -12.983 D 10 8 3 11 3 21 43 1088 2318 -18.900 -0.059 -4.635 IR 11 11 3 11 3 22 44 1089 2319 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 205 - A - - MR 12 11 3 14 5 21 43 1088 2318 -5.364 -0.119 -17.441 -4.192 -18.545 1.580 -1.709 -1.902 -1.197 D 13 11 3 14 5 19 41 1084 2315 -12.399 -7.753 -0.027 -11.456 -6.192 IR 14 14 3 14 5 21 43 1088 2319 -1.523 -0.745 -4.189 -11.372 -12.477 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 202 G C - - MP 15 14 3 19 6 20 42 1087 2317 -18.470 -18.409 -0.060 -17.186 -17.465 -4.621 -12.475 -11.117 -12.294 -0.563 -1.068 -12.892 0.032 -5.674 -12.725 3.598 -2.414 -1.389 0.167 -12.153 -10.479 -11.257 ML 16 14 3 19 6 22 43 1084 2315 -13.760 -14.106 -8.820 -0.004 -13.956 -11.485 -9.839 -8.722 -11.106 1.999 MR 17 14 3 19 6 22 43 1085 2315 -15.775 -14.504 -2.039 -14.482 -0.406 -8.902 -9.630 1.974 -10.035 -3.862 D 18 14 3 19 6 16 36 1078 2308 -10.889 -9.587 -5.385 -6.067 -6.084 -0.082 IL 19 19 5 19 6 19 41 1086 2317 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 19 41 1086 2317 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 201 G C - - MP 21 20 6 25 6 23 44 1085 2316 -18.431 -18.370 -0.017 -6.429 -17.427 -17.822 -1.840 -1.570 -12.221 -1.801 -13.342 -1.732 2.594 -12.908 -7.202 3.015 -4.018 -1.494 -2.002 -12.076 -10.419 -11.186 ML 22 20 6 25 6 21 42 1083 2314 -13.760 -14.106 -3.228 -0.164 -13.956 -11.485 1.997 -9.098 -8.338 -8.454 MR 23 20 6 25 6 22 43 1083 2314 -2.316 -14.100 -5.346 -14.078 -0.369 -12.291 -3.497 0.764 1.141 -6.973 D 24 20 6 25 6 16 36 1078 2308 -17.888 -16.586 -7.717 -13.065 -13.082 -0.007 IL 25 25 5 25 6 22 43 1084 2315 -8.436 -8.699 -0.010 -10.354 -11.130 -10.790 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 19 41 1084 2315 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 200 c g - - MP 27 26 6 31 6 21 42 1083 2314 -18.432 -18.372 -0.002 -17.148 -9.830 -17.823 -12.730 -12.429 -12.729 1.726 -3.722 -13.573 2.931 -5.292 -12.588 1.360 -2.172 -2.003 0.863 -12.912 -3.274 -11.307 ML 28 26 6 31 6 20 41 1082 2313 -14.283 -14.630 -0.054 -4.782 -14.479 -12.009 -8.909 1.394 -10.006 0.453 MR 29 26 6 31 6 21 42 1082 2312 -15.004 -13.733 -1.415 -13.711 -0.679 -11.925 -8.286 -10.059 1.998 -9.046 D 30 26 6 31 6 16 36 1078 2308 -17.881 -16.579 -12.376 -13.058 -13.076 -0.001 IL 31 31 5 31 6 19 41 1082 2313 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 19 41 1082 2313 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 199 c g - - MP 33 32 6 37 6 19 40 1081 2312 -18.491 -18.430 -0.103 -17.207 -8.035 -3.938 -12.740 -8.071 -4.233 0.763 -9.932 -13.589 2.445 -12.288 -10.495 1.142 -13.127 -1.302 2.347 -1.146 -2.438 -1.107 ML 34 32 6 37 6 19 40 1079 2310 -9.575 -9.922 -4.636 -0.074 -9.771 -7.301 -3.489 -3.183 -4.277 1.907 MR 35 32 6 37 6 20 41 1080 2311 -14.399 -13.128 -0.076 -13.106 -4.297 -11.320 -7.703 -9.477 1.997 -8.465 D 36 32 6 37 6 16 36 1078 2308 -17.881 -16.579 -1.507 -13.058 -13.076 -0.626 IL 37 37 5 37 6 19 40 1080 2311 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 19 40 1080 2311 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 198 c g - - MP 39 38 6 43 6 21 41 1079 2310 -18.441 -18.381 -0.000 -17.157 -17.437 -17.832 -8.887 -12.436 -12.737 2.172 -3.078 -13.581 2.601 -12.257 -12.596 1.412 -13.109 -3.577 1.089 -12.919 -1.490 -3.667 ML 40 38 6 43 6 19 39 1078 2309 -9.575 -9.922 -0.089 -4.330 -9.771 -7.301 -4.106 1.924 -4.776 -3.180 MR 41 38 6 43 6 17 37 1075 2306 -12.253 -10.982 -6.891 -10.961 -0.016 -9.174 -2.921 -0.231 -0.244 1.119 D 42 38 6 43 6 16 36 1076 2307 -19.062 -17.760 -0.431 -14.239 -14.257 -1.955 IL 43 43 5 43 6 18 38 1078 2309 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 18 38 1078 2309 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 197 g c - - MP 45 44 6 49 6 19 39 1077 2308 -5.780 -18.480 -0.045 -17.256 -6.332 -17.931 -12.525 -11.196 -12.351 1.945 -13.284 -12.955 0.780 -12.973 -12.762 2.946 -13.021 -1.991 0.446 -5.511 0.123 -11.299 ML 46 44 6 49 6 17 37 1076 2306 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 16 36 1074 2305 -12.253 -10.982 -6.891 -10.961 -0.016 -9.174 -6.410 1.985 -6.860 -5.503 D 48 44 6 49 6 15 35 1074 2304 -17.108 -15.806 -1.357 -12.286 -12.303 -0.715 IL 49 49 5 49 6 19 38 1076 2307 -9.539 -9.802 -0.005 -11.457 -12.233 -11.893 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 17 38 1076 2307 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 196 g c - - MP 51 50 6 55 4 18 37 1075 2306 -17.765 -17.972 -0.000 -16.386 -12.513 -6.410 -12.332 2.027 -13.462 -12.930 0.141 -13.020 -12.768 2.660 -13.015 0.194 1.615 -1.836 -10.537 -11.297 ML 52 50 6 55 4 16 36 1074 2305 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 15 35 1073 2304 -12.116 -11.145 -4.038 -0.092 -7.165 -0.230 -7.959 1.649 D 54 50 6 55 4 15 34 1073 2303 -11.817 -11.498 -2.237 -0.345 IL 55 55 5 55 4 17 37 1075 2306 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 17 36 1075 2305 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - - - ML 57 56 6 59 3 16 35 1073 2304 -18.680 -0.000 -17.334 -15.609 -2.286 -16.936 1.924 D 58 56 6 59 3 14 34 1072 2303 -14.890 -0.214 -2.860 IL 59 59 3 59 3 16 36 1074 2304 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 60 59 3 62 2 15 34 1072 2303 -19.369 -0.000 1.764 -3.365 -1.294 -3.356 D 61 59 3 62 2 14 33 1071 2302 -10.599 -0.001 IL 62 62 3 62 2 15 35 1073 2303 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 14 33 1071 2302 [ BEGR 46 ] - - - - - - S 64 63 1 65 3 0 3 160 340 -18.718 -0.000 -17.372 IL 65 65 2 65 3 1 4 162 341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 154 - G - - - ML 66 65 2 68 3 1 3 160 340 -18.718 -0.202 -2.935 0.392 -1.626 1.041 -1.710 D 67 65 2 68 3 0 2 161 341 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 161 340 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 155 - U - - - ML 69 68 3 71 3 1 2 159 338 -2.877 -0.226 -6.843 -1.569 -2.958 0.353 1.175 D 70 68 3 71 3 0 1 163 342 -2.137 -0.373 -11.594 IL 71 71 3 71 3 1 3 177 356 -0.148 -3.747 -5.437 0.000 0.000 0.000 0.000 [ MATL 49 ] 176 - G - - - ML 72 71 3 74 3 1 1 26 45 -18.655 -0.269 -2.557 -3.212 -3.576 1.846 -2.233 D 73 71 3 74 3 0 0 25 44 -15.587 -11.100 -0.001 IL 74 74 3 74 3 1 2 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 177 - U - - - ML 75 74 3 77 3 1 2 25 44 -18.387 -0.000 -17.041 -0.800 -3.400 -4.025 1.709 D 76 74 3 77 3 0 0 24 43 -17.853 -0.000 -12.244 IL 77 77 3 77 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 178 - C - - - ML 78 77 3 80 5 1 2 24 43 -17.651 -0.000 -17.466 -17.678 -18.570 -1.069 1.631 -2.330 -2.132 D 79 77 3 80 5 0 0 25 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 80 80 3 80 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 179 195 G C - - MP 81 80 3 85 6 2 2 23 42 -18.579 -18.519 -0.000 -17.295 -17.575 -17.970 -12.560 -11.200 -12.379 1.056 -13.499 -12.977 1.354 -6.645 -4.594 3.290 -13.062 -0.578 -4.105 -12.236 -0.323 -11.343 ML 82 80 3 85 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 180 194 c g - - MP 87 86 6 91 6 2 2 21 40 -18.579 -18.519 -0.000 -17.295 -17.575 -17.970 -12.817 -2.582 -12.780 0.258 -11.915 -13.567 2.454 -12.482 -12.744 1.982 -13.213 1.000 1.199 -10.557 -0.148 -7.395 ML 88 86 6 91 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 181 193 c g - - MP 93 92 6 97 6 2 2 19 38 -18.579 -18.519 -0.000 -17.295 -17.575 -17.970 -12.533 -2.340 -12.439 1.297 -12.448 -5.673 2.364 -2.265 -12.658 1.785 -10.373 0.726 -0.841 -7.905 1.046 -2.047 ML 94 92 6 97 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 182 192 G C - - MP 99 98 6 103 6 2 2 17 36 -18.579 -18.519 -0.000 -17.295 -17.575 -17.970 -16.239 -13.147 -17.719 0.341 -18.008 -14.406 -3.495 -17.482 -14.495 3.870 -14.722 -5.620 -12.762 -14.836 -14.828 -16.506 ML 100 98 6 103 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 183 191 G C - - MP 105 104 6 109 4 2 2 15 34 -17.809 -18.016 -0.000 -16.430 -16.211 -2.443 -3.679 -10.491 -17.995 -14.419 -12.437 -17.414 -11.083 3.961 -11.103 -2.587 -12.757 -14.844 -14.822 -16.409 ML 106 104 6 109 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 184 - U - - - ML 111 110 6 113 3 1 1 12 31 -18.718 -0.000 -17.372 -4.082 -6.611 -6.396 1.970 D 112 110 6 113 3 0 0 19 37 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 185 - U - - - ML 114 113 3 116 3 1 1 11 30 -18.718 -0.000 -17.372 -15.742 -14.514 -5.318 1.991 D 115 113 3 116 3 0 0 18 36 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 186 - C - - - ML 117 116 3 119 3 1 1 10 28 -18.718 -0.000 -17.372 -6.793 1.992 -13.353 -6.266 D 118 116 3 119 3 0 0 17 35 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 187 - G - - - ML 120 119 3 122 3 1 1 9 27 -18.718 -0.000 -17.372 -1.062 -14.943 1.816 -13.971 D 121 119 3 122 3 0 0 16 34 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 188 - A - - - ML 123 122 3 125 3 1 1 7 26 -18.718 -0.000 -17.372 1.995 -14.630 -13.932 -6.143 D 124 122 3 125 3 0 0 15 33 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 189 - U - - - ML 126 125 3 128 3 1 1 6 24 -18.718 -0.018 -6.370 -0.275 -1.084 -1.886 1.281 D 127 125 3 128 3 0 0 13 32 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 190 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -5.787 -1.270 -2.588 1.766 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 2 13 1048 2279 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 185 2 13 1048 2279 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 3 1031 2262 -0.047 -16.709 -4.957 -16.757 [ MATP 18 ] 12 128 G C - - MP 136 135 1 140 6 2 6 1033 2264 -18.532 -18.472 -0.000 -17.248 -17.528 -17.923 -16.337 -13.094 -18.187 -1.407 -18.032 -14.298 -1.154 -17.829 -14.453 3.923 -14.661 -7.676 -12.737 -14.749 -14.813 -17.079 ML 137 135 1 140 6 1 1 1016 2246 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 1 3 670 1900 -15.037 -13.766 -9.675 -13.744 -0.002 -11.958 -9.218 1.641 -10.044 -0.187 D 139 135 1 140 6 0 0 958 2188 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 1026 2257 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 1025 2256 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 127 C G - - MP 142 141 6 146 6 2 5 1031 2262 -5.426 -18.472 -0.034 -17.248 -17.528 -17.923 -15.591 -15.872 -14.908 -12.109 -7.074 -15.052 3.936 -14.174 -15.012 -12.081 -15.132 -14.277 -2.230 -15.425 -2.047 -2.122 ML 143 141 6 146 6 1 1 1006 2236 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 3 643 1873 -15.037 -13.766 -9.675 -13.744 -0.002 -11.958 -9.274 1.524 -10.267 0.164 D 145 141 6 146 6 0 0 940 2171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 3 1032 2262 -1.394 -0.697 -8.753 -12.490 -13.266 -12.926 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 3 1030 2261 -8.997 -0.004 -12.508 -10.675 -11.781 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 125 U A - - MP 148 147 6 152 6 2 4 1029 2260 -18.532 -5.161 -0.041 -17.248 -17.528 -17.923 -15.577 -15.815 -14.905 -0.991 -13.267 -15.060 -0.452 -14.176 -15.003 -0.477 -15.129 -14.146 3.809 -15.426 -4.884 -13.808 ML 149 147 6 152 6 1 1 985 2215 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 2 600 1831 -15.037 -13.766 -9.675 -13.744 -0.002 -11.958 -6.102 1.111 -2.985 0.764 D 151 147 6 152 6 0 0 914 2145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 1021 2251 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 3 1028 2259 -9.259 -0.004 -12.770 -10.938 -12.044 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 123 C G - - MP 154 153 6 158 4 2 2 1027 2258 -1.322 -17.969 -0.780 -5.838 -0.085 -15.825 -14.907 -2.322 -5.847 -15.060 3.799 -2.047 -4.074 -12.048 -15.131 -2.278 -9.998 -15.428 -1.268 -13.810 ML 155 153 6 158 4 1 1 913 2144 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 4 1 1 483 1713 -13.062 -12.091 -0.343 -2.244 0.155 -7.888 -8.968 1.526 D 157 153 6 158 4 0 0 875 2105 -4.568 -4.250 -2.265 -0.520 IL 158 158 5 158 4 1 1 1086 2317 -0.022 -20.064 -6.348 -8.600 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 1 87 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 99 - A - - - ML 160 159 6 162 3 1 1 86 182 -18.581 -0.016 -6.481 1.978 -6.588 -13.550 -4.312 D 161 159 6 162 3 0 0 83 180 -16.677 -5.645 -0.029 IL 162 162 3 162 3 1 1 86 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 100 - G - - - ML 163 162 3 165 3 1 1 85 181 -18.567 -0.033 -5.451 -3.145 -3.903 1.920 -4.819 D 164 162 3 165 3 0 0 83 180 -16.804 -2.007 -0.413 IL 165 165 3 165 3 1 1 85 182 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 101 - U - - - ML 166 165 3 168 3 1 1 84 180 -18.574 -0.229 -2.771 -2.327 0.124 -4.860 1.420 D 167 165 3 168 3 0 0 83 180 -16.744 -12.257 -0.000 IL 168 168 3 168 3 1 1 85 181 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 102 - U - - - ML 169 168 3 171 3 1 3 83 179 -2.082 -0.389 -16.999 -1.319 0.364 -11.844 1.209 D 170 168 3 171 3 0 0 83 180 -1.762 -0.583 -4.735 IL 171 171 3 171 3 1 3 89 186 -0.275 -2.525 -16.634 0.000 0.000 0.000 0.000 [ MATL 26 ] 115 - G - - - ML 172 171 3 174 3 1 2 17 32 -18.706 -0.000 -17.360 -5.299 -7.177 1.977 -4.963 D 173 171 3 174 3 0 0 15 31 -13.271 -8.784 -0.003 IL 174 174 3 174 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 116 - G - - - ML 175 174 3 177 3 1 1 16 31 -18.706 -0.000 -17.360 -13.241 -14.976 2.000 -13.970 D 176 174 3 177 3 0 0 15 30 -13.271 -0.007 -7.662 IL 177 177 3 177 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 117 - U - - - ML 178 177 3 180 3 1 1 15 30 -2.048 -0.399 -17.372 -0.960 -2.559 -1.863 1.605 D 179 177 3 180 3 0 0 11 26 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 15 30 -1.754 -0.507 -14.571 0.000 0.000 0.000 0.000 [ MATL 29 ] 122 - A - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.740 -3.028 -1.397 -2.673 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 185 134 1 186 3 0 0 36 62 -18.718 -0.018 -6.370 IL 186 186 2 186 3 1 1 38 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 129 - A - - - ML 187 186 2 189 5 1 3 36 62 -4.067 -0.089 -17.449 -17.661 -18.553 1.285 -3.510 0.536 -5.313 D 188 186 2 189 5 0 0 35 61 -11.735 -0.006 -10.996 -9.371 -9.284 IL 189 189 3 189 5 1 1 36 62 -10.375 -0.002 -12.054 -13.886 -13.160 0.000 0.000 0.000 0.000 [ MATP 33 ] 131 153 g c - - MP 190 189 3 194 6 2 3 35 61 -18.579 -18.519 -0.206 -17.295 -2.907 -17.970 -0.913 -3.426 -12.262 1.778 -1.144 -12.917 1.150 -4.216 -1.468 2.055 -12.903 0.710 1.540 -12.187 -9.371 -2.672 ML 191 189 3 194 6 1 1 33 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 3 194 6 1 1 34 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 3 194 6 0 0 31 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 132 152 c g - - MP 196 195 6 200 6 2 4 32 59 -18.373 -18.312 -0.000 -17.089 -17.369 -17.764 -12.676 -12.371 -12.675 1.929 -11.544 -13.517 2.598 -12.196 -12.534 1.083 -13.047 -5.258 1.942 -9.892 -6.439 -2.851 ML 197 195 6 200 6 1 1 31 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 34 61 -17.084 -15.813 -11.722 -15.791 -0.001 -14.005 2.000 -11.759 -11.003 -11.092 D 199 195 6 200 6 0 0 30 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 32 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 32 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 133 151 G C - - MP 202 201 6 206 6 2 4 30 57 -18.373 -18.312 -0.000 -17.089 -17.369 -17.764 -12.558 -11.540 -12.445 -0.643 -12.277 -13.124 1.865 -12.569 -12.632 3.280 -5.815 -2.732 0.626 -12.419 -1.779 -11.252 ML 203 201 6 206 6 1 1 30 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 33 60 -17.084 -15.813 -11.722 -15.791 -0.001 -14.005 0.423 -2.020 0.218 0.322 D 205 201 6 206 6 0 0 29 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 30 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 134 150 G C - - MP 208 207 6 212 6 2 3 28 55 -18.373 -18.312 -0.000 -17.089 -17.369 -17.764 -12.725 -4.896 -12.569 -0.927 -13.686 -4.989 -0.257 -13.251 -7.268 3.678 -13.113 0.525 -1.605 -12.349 -10.756 -11.535 ML 209 207 6 212 6 1 1 30 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 6 1 1 32 59 -17.084 -15.813 -11.722 -15.791 -0.001 -14.005 0.765 -0.174 -0.414 -0.591 D 211 207 6 212 6 0 0 28 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 212 212 5 212 6 1 1 29 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 29 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 135 149 A U - - MP 214 213 6 218 4 2 2 26 53 -17.602 -4.635 -0.177 -3.733 -12.336 -12.094 -12.335 3.154 -4.126 -12.955 1.766 -11.943 -12.222 0.812 -12.620 -9.887 0.497 -12.477 -4.060 -1.283 ML 215 213 6 218 4 1 1 30 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 216 213 6 218 4 1 1 31 58 -2.631 -14.139 -12.006 -0.255 0.480 -1.086 -0.522 0.523 D 217 213 6 218 4 0 0 28 55 -4.568 -4.250 -2.265 -0.520 IL 218 218 5 218 4 1 1 32 59 -1.002 -1.003 -9.576 -13.314 0.000 0.000 0.000 0.000 IR 219 219 6 219 3 1 1 26 52 -2.120 -0.377 -12.345 0.000 0.000 0.000 0.000 [ MATL 38 ] 138 - C - - - ML 220 219 6 222 3 1 1 24 51 -18.437 -0.161 -3.246 -4.144 1.270 -5.568 0.595 D 221 219 6 222 3 0 0 22 48 -17.639 -13.152 -0.000 IL 222 222 3 222 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 139 - U - - - ML 223 222 3 225 3 1 1 23 50 -18.276 -0.000 -16.930 -7.559 -3.608 -2.740 1.912 D 224 222 3 225 3 0 0 22 48 -18.215 -1.048 -0.953 IL 225 225 3 225 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 140 - u - - - ML 226 225 3 228 3 1 1 22 49 -18.507 -0.000 -17.161 0.070 -0.301 -0.050 0.229 D 227 225 3 228 3 0 0 21 48 -17.261 -0.069 -4.421 IL 228 228 3 228 3 1 1 23 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 141 - a - - - ML 229 228 3 231 3 1 1 21 48 -6.338 -0.018 -17.363 0.026 -0.046 0.023 -0.004 D 230 228 3 231 3 0 0 14 40 -12.845 -8.358 -0.005 IL 231 231 3 231 3 1 1 27 53 -1.004 -0.998 -10.779 0.000 0.000 0.000 0.000 [ MATL 42 ] 144 - a - - - ML 232 231 3 234 3 1 1 7 26 -18.709 -0.000 -17.363 0.315 -0.143 -0.008 -0.225 D 233 231 3 234 3 0 0 10 28 -12.845 -8.358 -0.005 IL 234 234 3 234 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 145 - A - - - ML 235 234 3 237 3 1 1 6 24 -18.709 -0.150 -3.339 1.305 -0.774 -0.300 -2.915 D 236 234 3 237 3 0 0 9 27 -12.845 -8.358 -0.005 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 146 - A - - - ML 238 237 3 240 2 1 1 1 1 * 0.000 1.503 -0.396 -2.099 -2.544 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Phe ACC bact-Phe-r2-022416 LENG 76 MAXL 1077 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 18:43:19 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Phe-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Phe-r2-022416.sto NSEQ 6546 EFFN 18.269413 CKSUM 2778915989 STATS LOCAL MSV -8.5714 0.71894 STATS LOCAL VITERBI -9.3797 0.71894 STATS LOCAL FORWARD -3.5749 0.71894 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50164 1.35021 1.27012 1.43864 1.38629 1.38629 1.38629 1.38629 0.00836 5.48191 5.48191 1.46634 0.26236 0.00000 * 1 2.19244 2.24964 0.38381 2.28616 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04556 5.48191 3.20940 1.46634 0.26236 1.09861 0.40547 2 2.05329 1.24803 0.69622 2.45161 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00856 5.45796 5.45796 0.59011 0.80803 2.45991 0.08932 3 1.65337 0.89369 1.62569 1.59615 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00945 5.46708 5.26161 1.46634 0.26236 2.45991 0.08932 4 1.87934 1.17886 1.66337 1.04930 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.07371 5.47757 2.70493 1.46634 0.26236 1.07323 0.41840 5 1.45442 1.02456 1.68566 1.50423 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00866 5.44623 5.44623 1.46634 0.26236 0.41814 1.07374 6 1.48429 2.12216 0.69437 1.86967 7 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03668 3.88024 4.17565 0.35509 1.20768 1.11861 0.39561 7 1.43729 2.40401 0.71188 1.70730 9 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00817 5.50459 5.50459 1.46634 0.26236 1.66254 0.21030 8 4.14709 2.81550 4.65529 0.08905 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.00814 5.50820 5.50820 1.46634 0.26236 0.37386 1.16498 9 0.21188 3.16823 2.27300 3.08215 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.03577 5.52920 3.46820 1.46634 0.26236 1.11872 0.39556 10 3.36228 3.62830 0.07056 4.97449 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50264 5.50264 1.46634 0.26236 2.34474 0.10078 11 4.94321 0.08339 4.85278 2.73228 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02979 3.67805 5.50264 0.64068 0.74852 2.34474 0.10078 12 3.10639 2.31860 2.80400 0.22783 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50264 5.50264 1.46634 0.26236 2.34474 0.10078 13 2.34283 0.34497 2.61633 2.09855 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.49163 0.99863 3.91259 4.20061 0.01510 0.41735 1.07526 14 0.03464 4.67241 4.73971 4.13793 99 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08368 5.51062 2.57396 1.46634 0.26236 1.78869 0.18294 15 2.97817 3.62854 0.11036 3.61000 100 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02982 5.43750 3.68768 1.46634 0.26236 1.35241 0.29924 16 2.56391 1.35658 3.50894 0.45330 101 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15228 5.44158 1.98834 1.46634 0.26236 0.41347 1.08279 17 2.07926 1.17660 3.41949 0.62751 102 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32334 1.30329 5.37392 1.70084 0.20154 0.10422 2.31287 18 4.16724 5.21727 0.03388 4.39078 115 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00801 5.52467 5.52467 1.46634 0.26236 1.60229 0.22494 19 4.91170 6.06315 0.01419 5.42591 116 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00801 5.52467 5.52467 1.46634 0.26236 0.51562 0.90915 20 1.95328 2.65133 2.53093 0.34524 117 U - - _ 1.38629 1.38629 1.38629 1.38629 0.25965 1.49287 5.53245 0.37303 1.16682 1.09861 0.40547 21 0.23233 3.01003 2.33054 2.80047 122 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 22 2.05066 2.93535 0.32063 2.38006 123 G - - > 1.38629 1.38629 1.38629 1.38629 0.03318 3.55171 5.53248 0.25623 1.48707 1.09861 0.40547 23 0.25624 2.80110 2.20281 2.90389 125 A - - > 1.38629 1.38629 1.38629 1.38629 0.02890 3.70788 5.53247 0.29625 1.36101 1.09861 0.40547 24 3.29882 4.25151 0.08107 3.62316 127 G - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 25 4.49861 0.09409 3.51218 3.01906 128 C - - > 1.38629 1.38629 1.38629 1.38629 0.01913 5.53248 4.20033 1.46634 0.26236 1.09861 0.40547 26 0.51968 3.33504 1.07639 3.54552 129 A - - , 1.38629 1.38629 1.38629 1.38629 0.06446 2.83995 5.52138 0.13172 2.09223 0.42384 1.06284 27 1.42824 1.57933 1.18582 1.39167 131 g - - < 1.38629 1.38629 1.38629 1.38629 0.13900 5.53247 2.07297 1.46634 0.26236 1.09861 0.40547 28 1.58816 1.02772 1.81934 1.28828 132 c - - < 1.38629 1.38629 1.38629 1.38629 0.00905 5.40253 5.40253 1.46634 0.26236 3.52050 0.03003 29 2.27389 1.57458 0.60463 1.93989 133 G - - < 1.38629 1.38629 1.38629 1.38629 0.00905 5.40253 5.40253 1.46634 0.26236 3.52050 0.03003 30 2.23091 2.59634 0.27996 2.77728 134 G - - < 1.38629 1.38629 1.38629 1.38629 0.00905 5.40253 5.40253 1.46634 0.26236 1.73260 0.19459 31 0.92459 1.38714 1.83181 1.64302 135 a - - < 1.38629 1.38629 1.38629 1.38629 0.10207 3.63681 2.64939 0.30647 1.33195 3.36122 0.03531 32 2.89685 0.58218 3.65174 1.02115 138 C - - _ 1.38629 1.38629 1.38629 1.38629 0.10975 5.35609 2.31035 1.46634 0.26236 3.78119 0.02306 33 3.48602 3.08306 3.15642 0.12672 139 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25681 5.25681 1.46634 0.26236 0.74109 0.64740 34 1.28099 1.61088 1.50276 1.20393 140 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00908 5.39964 5.39964 1.46634 0.26236 0.10582 2.29845 35 1.30656 1.48467 1.45833 1.30915 141 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01943 4.18237 5.52669 0.87859 0.53677 1.49481 0.25398 36 1.17326 1.53584 1.47283 1.40205 144 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00799 5.52669 5.52669 1.46634 0.26236 1.49481 0.25398 37 0.55723 1.91872 1.64882 2.42888 145 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10332 5.52668 2.36251 1.46634 0.26236 1.49481 0.25398 38 0.41098 1.74657 2.56393 2.45775 146 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06799 2.79109 5.43213 0.35878 1.19908 0.07658 2.60741 39 1.80402 1.91265 1.32491 0.86311 149 u - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 40 2.60742 0.43935 2.39921 1.65532 150 C - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 41 2.01554 0.71783 1.46139 1.91713 151 c - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 42 1.18525 1.98848 1.05429 1.56547 152 g - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 43 1.36825 1.47237 1.51567 1.21603 153 u - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 44 1.17731 2.31463 0.74684 2.12670 154 g - - , 1.38629 1.38629 1.38629 1.38629 0.10557 5.53247 2.34097 1.46634 0.26236 1.09861 0.40547 45 1.93947 2.53609 1.29018 0.68951 155 U - - , 1.38629 1.38629 1.38629 1.38629 0.18068 1.87518 4.42530 2.27501 0.10847 0.07901 2.57737 46 2.77905 3.30230 0.18147 2.70213 176 G - - , 1.38629 1.38629 1.38629 1.38629 0.21043 5.52553 1.68317 1.46634 0.26236 1.55741 0.23658 47 1.99551 2.92575 3.35530 0.25421 177 U - - , 1.38629 1.38629 1.38629 1.38629 0.00979 5.32488 5.32488 1.46634 0.26236 0.04051 3.22648 48 2.06809 0.34724 2.87415 2.20296 178 C - - , 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 49 1.82567 1.94896 0.48967 2.48126 179 G - - < 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 50 2.11972 1.14402 1.11789 1.45060 180 g - - < 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 51 1.66114 1.23032 1.26148 1.44968 181 c - - < 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 52 2.56952 4.53909 0.09933 4.92001 182 G - - < 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 53 3.03078 4.32307 0.08047 4.14880 183 G - - < 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 54 3.41203 3.63153 4.15036 0.07819 184 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 55 4.05325 3.92826 4.17010 0.05392 185 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 56 4.74948 0.02781 5.23313 4.30978 186 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 57 2.22535 4.86584 0.13568 4.49702 187 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 58 0.01586 5.57280 5.23987 5.01534 188 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 59 1.48411 1.96573 2.32067 0.62543 189 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 5.53248 4.20033 1.46634 0.26236 1.09861 0.40547 60 3.51072 2.26199 3.08604 0.19809 190 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00803 5.52138 5.52138 1.46634 0.26236 0.42384 1.06284 61 4.36048 0.09292 3.92679 2.87792 191 C - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 62 5.03378 0.10866 4.44894 2.46798 192 C - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 63 2.03126 1.51759 0.97166 1.30514 193 g - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 64 1.73113 1.41615 0.98608 1.57392 194 g - - > 1.38629 1.38629 1.38629 1.38629 0.00794 5.53248 5.53248 1.46634 0.26236 1.09861 0.40547 65 3.14688 0.57511 1.70466 1.54865 195 C - - > 1.38629 1.38629 1.38629 1.38629 0.02041 5.53248 4.12001 1.46634 0.26236 1.09861 0.40547 66 1.84304 0.83485 2.29482 1.18108 196 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01611 5.52007 4.42479 1.46634 0.26236 1.80928 0.17885 67 2.30972 0.75800 1.76336 1.34461 197 c - - ) 1.38629 1.38629 1.38629 1.38629 0.07088 5.51207 2.74281 1.46634 0.26236 2.09138 0.13184 68 1.68263 1.77654 0.94384 1.36351 198 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02207 5.44982 4.04384 1.46634 0.26236 0.41779 1.07441 69 1.25865 1.74756 1.06393 1.62624 199 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01765 5.47998 4.31792 1.46634 0.26236 2.48062 0.08740 70 1.75101 1.80095 0.80953 1.53159 200 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01043 5.47061 5.08808 1.46634 0.26236 1.42052 0.27653 71 2.47494 0.73774 1.22397 1.94088 201 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00838 5.47879 5.47879 1.46634 0.26236 0.17915 1.80778 72 2.27266 0.44498 2.28118 1.87105 202 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02871 3.71789 5.51645 0.63014 0.76039 1.09861 0.40547 73 0.37702 2.35574 2.46966 2.00502 205 A - - : 1.38629 1.38629 1.38629 1.38629 0.21518 5.23001 1.66999 1.46634 0.26236 1.09861 0.40547 74 4.78794 0.03021 5.16176 4.15400 206 C - - : 1.38629 1.38629 1.38629 1.38629 0.01319 5.02802 5.02802 1.46634 0.26236 3.61534 0.02728 75 4.78794 0.03021 5.16176 4.15400 207 C - - : 1.38629 1.38629 1.38629 1.38629 0.01319 5.02802 5.02802 1.46634 0.26236 3.61534 0.02728 76 0.02294 5.09962 4.70810 4.88572 208 A - - : 1.38629 1.38629 1.38629 1.38629 0.00662 5.02145 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Pro ACC bact-Pro-r2-022416 STATES 245 NODES 66 CLEN 77 W 1134 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 19:10:31 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Pro-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Pro-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Pro-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Pro-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10621 EFFN 10621.000000 CKSUM 2863414592 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.1472 0.71895 ECMLC 0.61811 -8.84063 1.44259 1600000 691271 0.001736 ECMGC 0.38805 -25.76892 -14.65609 1600000 29846 0.013402 ECMLI 0.60964 -8.61722 1.73582 1600000 661118 0.001815 ECMGI 0.38184 -24.14813 -12.92404 1600000 29065 0.013762 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1134 2446 -18.301 -19.546 -0.624 -1.509 IL 1 1 2 1 4 16 37 1138 2450 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 39 1138 2450 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 213 - A - - MR 3 2 3 5 3 20 40 1137 2449 -19.085 -0.000 -17.402 2.000 -14.710 -13.983 -14.041 D 4 2 3 5 3 13 32 1134 2446 -19.294 -14.472 -0.000 IR 5 5 3 5 3 16 38 1137 2449 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 212 - C - - MR 6 5 3 8 3 19 39 1136 2448 -19.085 -0.000 -17.402 -15.842 2.000 -17.092 -13.908 D 7 5 3 8 3 13 32 1134 2446 -19.294 -14.472 -0.000 IR 8 8 3 8 3 16 38 1136 2448 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 211 - C - - MR 9 8 3 11 3 18 38 1135 2447 -19.085 -0.000 -17.402 -15.842 2.000 -17.092 -13.908 D 10 8 3 11 3 13 32 1134 2446 -19.294 -0.021 -6.081 IR 11 11 3 11 3 13 31 1135 2447 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 210 - A - - MR 12 11 3 14 5 17 37 1134 2446 -5.090 -0.289 -18.157 -2.717 -19.261 1.821 -5.472 -2.188 -2.152 D 13 11 3 14 5 10 27 1126 2438 -11.354 -6.709 -0.927 -10.412 -1.110 IR 14 14 3 14 5 16 34 1133 2445 -10.062 -2.748 -3.789 -0.363 -12.846 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 208 C G - - MP 15 14 3 19 6 21 39 1133 2445 -18.988 -18.928 -0.000 -17.704 -17.984 -18.379 -16.044 -16.315 -2.913 -3.503 -5.336 -15.511 3.745 -14.631 -15.466 0.627 -15.588 -14.700 -10.449 -15.882 -0.317 -14.269 ML 16 14 3 19 6 16 35 1131 2443 -12.489 -12.835 -1.200 -0.828 -12.685 -10.214 0.433 -6.269 1.390 -5.962 MR 17 14 3 19 6 15 33 1132 2444 -18.166 -16.895 -0.055 -16.873 -4.735 -15.086 -4.066 1.545 0.031 -10.575 D 18 14 3 19 6 10 25 1119 2431 -14.636 -13.334 -9.131 -9.813 -9.831 -0.006 IL 19 19 5 19 6 13 31 1132 2444 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 13 31 1131 2443 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 207 G C - - MP 21 20 6 25 6 21 38 1131 2443 -19.260 -19.199 -0.000 -17.976 -18.256 -18.651 -16.823 -4.861 -18.071 -1.833 -18.334 -14.978 -3.334 -18.121 -15.133 3.871 -15.338 -2.152 -1.304 -1.614 -15.182 -17.019 ML 22 20 6 25 6 15 34 1130 2442 -11.678 -12.024 -0.769 -1.282 -11.874 -9.403 1.989 -7.094 -6.424 -6.592 MR 23 20 6 25 6 12 28 1124 2436 -13.438 -12.167 -8.076 -12.145 -0.735 -1.341 -6.390 1.260 -7.485 0.666 D 24 20 6 25 6 10 25 1119 2431 -14.636 -13.334 -9.131 -9.813 -9.831 -0.006 IL 25 25 5 25 6 13 31 1130 2442 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 13 31 1130 2442 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 206 G C - - MP 27 26 6 31 6 20 36 1129 2441 -4.337 -19.202 -0.073 -17.978 -18.258 -18.653 -16.127 0.302 -16.639 -0.530 -17.737 -15.212 -0.501 -16.836 -15.053 3.690 -15.341 -1.345 -3.862 -15.395 -14.732 -15.429 ML 28 26 6 31 6 15 33 1128 2440 -10.436 -10.782 -0.048 -5.191 -10.632 -8.161 -4.660 -4.248 -5.473 1.958 MR 29 26 6 31 6 15 31 1125 2437 -12.716 -11.444 -7.353 -11.423 -0.012 -9.636 -6.910 1.989 -7.367 -5.976 D 30 26 6 31 6 10 25 1119 2431 -15.672 -14.370 -10.167 -10.849 -10.867 -0.003 IL 31 31 5 31 6 16 33 1128 2440 -0.370 -14.101 -12.019 -15.756 -2.146 -16.193 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 13 31 1128 2440 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 205 G C - - MP 33 32 6 37 6 18 34 1127 2439 -19.191 -19.130 -0.000 -17.907 -18.187 -18.582 -13.156 -6.452 -1.030 0.872 -14.102 -13.571 0.802 -13.664 -13.412 3.177 -13.659 0.906 -0.018 -12.829 -5.640 -11.940 ML 34 32 6 37 6 13 30 1125 2437 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 15 30 1124 2436 -16.448 -15.177 -5.030 -15.156 -0.045 -13.369 1.622 -2.742 -1.076 -1.746 D 36 32 6 37 6 10 25 1119 2431 -15.672 -14.370 -7.157 -10.849 -10.867 -0.012 IL 37 37 5 37 6 13 31 1126 2438 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 13 31 1126 2438 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 10 204 g c - - MP 39 38 6 43 6 16 32 1125 2437 -19.194 -19.133 -0.012 -17.909 -6.933 -18.584 -13.159 -4.163 -12.977 2.434 -14.108 -0.779 -0.704 -13.667 -13.415 2.981 -13.661 0.203 -3.269 -12.831 -2.377 -11.943 ML 40 38 6 43 6 13 29 1123 2435 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 14 29 1123 2435 -16.404 -15.133 -11.042 -15.111 -0.001 -13.325 -9.133 1.802 -1.472 -2.730 D 42 38 6 43 6 10 25 1119 2431 -15.663 -14.361 -10.158 -10.840 -10.858 -0.003 IL 43 43 5 43 6 13 30 1124 2436 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 13 30 1124 2436 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 11 203 u a - - MP 45 44 6 49 6 14 30 1123 2435 -6.264 -19.121 -0.019 -15.098 -18.177 -18.572 -4.030 -13.179 -13.479 2.166 -9.264 -14.322 1.937 -12.997 -13.336 -1.753 -13.850 -6.126 2.642 -7.206 -1.237 -0.652 ML 46 44 6 49 6 12 28 1121 2433 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 13 28 1122 2434 -16.606 -15.335 -0.164 -15.313 -3.223 -13.527 -0.784 -8.003 -0.943 1.534 D 48 44 6 49 6 10 25 1119 2431 -15.663 -14.361 -10.158 -10.840 -10.858 -0.003 IL 49 49 5 49 6 13 29 1122 2434 -9.695 -9.958 -0.004 -11.613 -12.389 -12.049 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 13 28 1122 2434 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 13 202 G C - - MP 51 50 6 55 4 12 28 1121 2433 -18.490 -18.697 -0.035 -5.393 -13.236 -0.684 -13.056 1.503 -14.188 -13.652 -3.045 -5.897 -2.821 3.449 -13.739 -3.680 0.306 -5.244 -11.262 -12.020 ML 52 50 6 55 4 11 27 1120 2432 -4.092 -4.275 -0.386 -3.004 0.058 -0.825 0.651 -0.280 MR 53 50 6 55 4 10 26 1119 2431 -11.415 -10.444 -8.311 -0.006 -7.686 1.993 -8.167 -6.690 D 54 50 6 55 4 10 25 1119 2431 -11.086 -10.767 -0.341 -2.256 IL 55 55 5 55 4 11 27 1121 2433 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 11 27 1121 2433 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 14 - U - - - ML 57 56 6 59 3 10 26 1119 2431 -19.371 -0.000 -18.025 -5.614 -12.526 -4.200 1.973 D 58 56 6 59 3 9 25 1118 2430 -15.817 -0.001 -10.209 IL 59 59 3 59 3 10 26 1120 2432 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - A - - - ML 60 59 3 62 2 9 25 1118 2430 -20.072 -0.000 1.624 -5.132 -0.238 -4.568 D 61 59 3 62 2 8 24 1117 2429 -8.445 -0.004 IL 62 62 3 62 2 9 25 1118 2430 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 8 24 1117 2429 [ BEGR 47 ] - - - - - - S 64 63 1 65 3 0 1 158 335 -19.416 -0.076 -4.285 IL 65 65 2 65 3 1 2 161 338 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 157 - G - - - ML 66 65 2 68 3 1 3 156 332 -19.340 -0.035 -5.374 0.215 -1.982 1.058 -0.987 D 67 65 2 68 3 0 1 174 350 -16.550 -12.063 -0.000 IL 68 68 3 68 3 1 2 160 336 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 158 - G - - - ML 69 68 3 71 3 1 2 153 330 -3.258 -0.159 -17.959 -1.678 -4.481 1.792 -2.470 D 70 68 3 71 3 0 1 174 350 -0.002 -10.364 -11.474 IL 71 71 3 71 3 1 1 174 350 -0.151 -3.935 -4.889 0.000 0.000 0.000 0.000 [ MATL 50 ] 179 - G - - - ML 72 71 3 74 3 1 1 26 44 -7.221 -0.073 -4.550 -2.078 -4.907 1.875 -3.993 D 73 71 3 74 3 0 0 24 42 -16.733 -12.246 -0.000 IL 74 74 3 74 3 1 2 26 44 -6.835 -0.015 -9.535 0.000 0.000 0.000 0.000 [ MATL 51 ] 181 - U - - - ML 75 74 3 77 3 1 4 25 43 -19.267 -0.000 -17.921 -3.451 -1.397 -2.098 1.720 D 76 74 3 77 3 0 0 24 42 -17.491 -0.381 -2.107 IL 77 77 3 77 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 182 - C - - - ML 78 77 3 80 5 1 4 24 42 -18.316 -0.000 -18.131 -18.343 -19.235 -4.095 1.869 -2.258 -3.654 D 79 77 3 80 5 0 0 22 36 -13.342 -9.186 -12.603 -10.978 -0.004 IL 80 80 3 80 5 1 1 27 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 183 201 G U - - MP 81 80 3 85 6 2 5 23 41 -19.244 -19.183 -0.000 -17.960 -18.239 -18.634 -11.141 -8.562 -11.123 -0.392 -15.016 -14.563 -1.819 -14.344 -5.881 2.596 -14.378 3.140 -4.448 -13.770 -12.106 -5.226 ML 82 80 3 85 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 19 35 -17.849 -16.548 -12.345 -13.027 -13.044 -0.001 IL 85 85 5 85 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 25 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 184 200 c g - - MP 87 86 6 91 6 2 5 21 39 -19.244 -19.183 -0.000 -17.960 -18.239 -18.634 -13.535 -10.768 -13.535 -0.897 -6.730 -3.703 2.801 -10.899 -4.544 1.938 -10.434 -0.021 1.120 -13.716 0.420 -4.890 ML 88 86 6 91 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 17 35 -17.849 -16.548 -12.345 -13.027 -13.044 -0.001 IL 91 91 5 91 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 185 199 A U - - MP 93 92 6 97 6 2 4 19 37 -19.244 -19.183 -0.011 -17.960 -7.090 -18.634 -3.702 -4.540 -13.072 3.394 -10.574 -13.677 -0.718 -13.717 -13.489 1.797 -13.746 -4.011 0.250 -12.937 -4.858 -12.026 ML 94 92 6 97 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 16 35 -17.849 -16.548 -12.345 -13.027 -13.044 -0.001 IL 97 97 5 97 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 186 198 G C - - MP 99 98 6 103 6 2 2 17 35 -19.233 -19.172 -0.009 -17.949 -18.229 -7.272 -14.787 -2.587 -14.735 -0.548 -10.016 -14.680 -2.340 -15.194 -14.524 3.879 -14.784 -8.828 -2.626 -14.348 -3.715 -13.663 ML 100 98 6 103 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 19 38 -13.578 -12.307 -8.216 -12.286 -0.007 -10.499 -7.910 1.994 -8.400 -6.893 D 102 98 6 103 6 0 0 16 34 -17.849 -16.548 -12.345 -13.027 -13.044 -0.001 IL 103 103 5 103 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 187 197 G C - - MP 105 104 6 109 4 2 2 14 33 -18.454 -18.661 -0.006 -7.924 -17.138 -6.743 -19.384 -4.180 -18.779 -14.949 -13.082 -18.873 -15.149 3.988 -15.343 -11.710 -3.847 -15.414 -15.530 -18.435 ML 106 104 6 109 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 18 37 -11.603 -10.632 -8.499 -0.005 -8.777 -7.829 -9.898 1.997 D 108 104 6 109 4 0 0 16 34 -13.621 -13.302 -11.318 -0.001 IL 109 109 5 109 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 188 - U - - - ML 111 110 6 113 3 1 4 12 30 -7.319 -0.009 -18.011 -5.428 -15.183 -17.878 1.992 D 112 110 6 113 3 0 0 11 29 -16.201 -2.487 -0.283 IL 113 113 3 113 3 1 1 12 30 -6.767 -0.015 -9.467 0.000 0.000 0.000 0.000 [ MATL 59 ] 190 - U - - - ML 114 113 3 116 3 1 3 11 29 -19.368 -0.000 -18.022 -13.864 -6.692 -5.860 1.990 D 115 113 3 116 3 0 0 11 30 -15.918 -0.305 -2.393 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 191 - C - - - ML 117 116 3 119 3 1 2 9 28 -19.407 -0.000 -18.061 -8.166 1.981 -6.378 -4.804 D 118 116 3 119 3 0 0 12 30 -13.527 -9.040 -0.003 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 192 - G - - - ML 120 119 3 122 3 1 1 8 26 -19.407 -0.000 -18.061 0.893 -8.180 1.095 -8.177 D 121 119 3 122 3 0 0 10 29 -13.527 -0.006 -7.919 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 193 - A - - - ML 123 122 3 125 3 1 1 6 25 -7.380 -0.009 -18.070 1.996 -8.202 -8.194 -8.196 D 124 122 3 125 3 0 0 13 31 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 8 26 -6.765 -0.015 -9.466 0.000 0.000 0.000 0.000 [ MATL 63 ] 195 - A - - - ML 126 125 3 128 3 1 1 5 24 -19.416 -0.006 -7.962 1.789 -3.830 -1.399 -3.396 D 127 125 3 128 3 0 0 13 32 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 196 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -7.144 -1.805 -5.474 1.881 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 2 11 1094 2406 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 188 2 11 1094 2406 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 1 67 134 -0.012 -7.169 -9.787 -17.455 [ MATP 18 ] 16 49 G C - - MP 136 135 1 140 6 2 4 67 134 -7.213 -19.205 -0.029 -17.981 -6.261 -18.656 -15.370 -13.944 -3.385 -4.660 -17.628 -17.742 -1.179 -15.630 -15.066 3.840 -3.212 -0.306 -12.990 -3.600 -14.890 -3.274 ML 137 135 1 140 6 1 1 54 121 -12.996 -13.342 -8.056 -7.751 -13.192 -0.013 -6.887 -8.657 1.994 -7.649 MR 138 135 1 140 6 1 1 54 120 -10.983 -9.712 -5.620 -9.690 -0.040 -7.903 -5.113 1.962 -5.626 -4.207 D 139 135 1 140 6 0 0 62 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 66 133 -8.838 -9.101 -0.008 -10.756 -11.532 -11.193 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 66 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 48 C G - - MP 142 141 6 146 6 2 2 65 132 -19.246 -4.170 -0.150 -4.809 -7.071 -15.352 -16.284 -16.554 -15.611 -0.343 -6.888 -7.727 3.822 -14.879 -15.712 -0.763 -15.836 -14.930 -1.128 -16.123 -6.564 -14.512 ML 143 141 6 146 6 1 1 71 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 1 46 112 -14.543 -13.272 -9.180 -13.250 -0.003 -11.463 1.825 -8.111 -1.153 -7.977 D 145 141 6 146 6 0 0 47 114 -16.141 -14.839 -10.636 -11.318 -11.335 -0.002 IL 146 146 5 146 6 1 1 65 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 62 128 -10.956 -0.001 -14.467 -12.635 -13.741 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 46 G C - - MP 148 147 6 152 6 2 4 61 127 -19.183 -19.122 -0.000 -17.899 -18.178 -18.573 -15.655 -6.443 -15.299 -2.183 -10.230 -15.637 -0.071 -14.791 -3.898 3.127 -3.904 -12.662 2.572 -15.666 -11.721 -14.121 ML 149 147 6 152 6 1 1 73 139 -15.315 -15.661 -4.852 -0.051 -15.511 -13.041 -11.769 -10.446 -13.267 2.000 MR 150 147 6 152 6 1 1 43 109 -15.142 -13.871 -9.779 -13.849 -0.491 -1.800 1.892 -1.832 -8.496 -8.084 D 151 147 6 152 6 0 0 45 111 -16.145 -14.843 -10.640 -11.322 -11.340 -0.002 IL 152 152 5 152 6 1 1 64 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 62 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 45 C G - - MP 154 153 6 158 4 2 2 59 125 -5.540 -18.621 -0.032 -11.809 -0.895 -13.760 -13.955 -1.118 -4.105 -14.695 3.814 -3.878 -13.840 -2.970 -14.308 -5.476 -2.241 -14.175 -2.010 -2.295 ML 155 153 6 158 4 1 1 72 138 -0.003 -12.532 -9.099 -11.262 -9.067 -10.835 1.999 -9.823 MR 156 153 6 158 4 1 1 41 107 -12.679 -1.067 -3.738 -1.160 -7.119 -6.897 -1.293 1.838 D 157 153 6 158 4 0 0 40 106 -12.475 -12.156 -1.875 -0.460 IL 158 158 5 158 4 1 1 71 137 -0.400 -2.046 -12.639 -16.376 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 1 38 69 -0.861 -1.154 -13.935 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - A - - - ML 160 159 6 162 3 1 2 28 51 -19.392 -0.000 -18.046 1.936 -4.762 -4.672 -3.350 D 161 159 6 162 3 0 0 23 47 -14.924 -10.437 -0.001 IL 162 162 3 162 3 1 1 29 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - G - - - ML 163 162 3 165 3 1 1 27 50 -19.392 -0.012 -6.889 -2.924 -5.367 1.943 -14.625 D 164 162 3 165 3 0 0 23 46 -14.924 -5.185 -0.040 IL 165 165 3 165 3 1 1 28 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - C - - - ML 166 165 3 168 3 1 1 26 49 -19.380 -0.134 -3.495 -1.377 1.068 -4.009 0.543 D 167 165 3 168 3 0 0 23 46 -15.482 -10.995 -0.001 IL 168 168 3 168 3 1 1 27 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - U - - - ML 169 168 3 171 3 1 1 25 48 -6.817 -0.553 -1.692 -1.930 0.389 -12.856 1.279 D 170 168 3 171 3 0 0 23 46 -17.663 -13.176 -0.000 IL 171 171 3 171 3 1 1 25 48 -7.150 -0.012 -9.850 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - U - - - ML 172 171 3 174 3 1 1 24 47 -18.712 -0.000 -17.366 -3.638 -0.759 -4.873 1.720 D 173 171 3 174 3 0 0 23 46 -19.462 -0.014 -6.717 IL 174 174 3 174 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 33 - G - - - ML 175 174 3 177 3 1 1 23 46 -19.411 -0.000 -18.065 -4.380 -15.685 1.973 -5.315 D 176 174 3 177 3 0 0 16 39 -12.750 -8.263 -0.005 IL 177 177 3 177 3 1 1 25 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 34 - G - - - ML 178 177 3 180 3 1 1 22 45 -19.411 -0.000 -18.065 -4.954 -15.708 1.988 -14.680 D 179 177 3 180 3 0 0 14 37 -12.750 -8.263 -0.005 IL 180 180 3 180 3 1 1 24 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 35 - U - - - ML 181 180 3 183 3 1 1 21 44 -1.451 -0.657 -18.065 -3.605 -1.107 -2.693 1.722 D 182 180 3 183 3 0 0 10 33 -12.750 -8.263 -0.005 IL 183 183 3 183 3 1 1 21 45 -1.154 -1.236 -2.988 0.000 0.000 0.000 0.000 [ MATL 30 ] 40 - A - - - ML 184 183 3 186 2 1 1 1 1 * 0.000 1.889 -3.545 -2.351 -6.110 D 185 183 3 186 2 0 0 0 0 * 0.000 IL 186 186 3 186 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 187 186 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 188 134 1 189 3 0 5 1076 2388 -19.416 -0.000 -18.070 IL 189 189 2 189 3 1 6 1080 2392 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 50 - A - - - ML 190 189 2 192 5 1 5 1076 2388 -18.349 -0.187 -5.092 -4.615 -4.286 1.314 -2.359 0.312 -3.709 D 191 189 2 192 5 0 2 1092 2404 -4.959 -0.803 -4.221 -2.596 -2.508 IL 192 192 3 192 5 1 6 1074 2386 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 51 156 C G - - MP 193 192 3 197 6 2 8 1068 2380 -19.090 -19.030 -0.045 -17.806 -5.022 -18.481 -0.620 -13.086 -7.336 -0.610 -4.851 -14.229 3.319 -6.872 -5.333 -2.261 -1.211 -3.164 1.694 -13.568 -0.620 -10.637 ML 194 192 3 197 6 1 6 1057 2369 -15.063 -15.409 -10.124 -0.002 -15.259 -12.789 -10.460 1.999 -11.115 -9.138 MR 195 192 3 197 6 1 7 1061 2373 -16.074 -14.803 -0.002 -14.781 -9.915 -12.995 1.998 -10.765 -8.005 -10.115 D 196 192 3 197 6 0 0 1155 2467 -19.015 -17.714 -13.511 -14.193 -14.210 -0.000 IL 197 197 5 197 6 1 5 1077 2389 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 5 1080 2392 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 52 155 C G - - MP 199 198 6 203 6 2 6 1059 2371 -19.113 -19.052 -0.000 -17.829 -18.108 -18.503 -13.412 -8.251 -13.412 -0.668 -4.527 -14.255 3.187 -12.930 -13.270 -1.411 -10.238 -2.119 2.421 -13.595 -1.981 -11.989 ML 200 198 6 203 6 1 5 1056 2368 -15.063 -15.409 -10.124 -0.002 -15.259 -12.789 1.977 -10.124 -4.023 -9.566 MR 201 198 6 203 6 1 2 1157 2469 -15.483 -14.212 -10.121 -14.190 -0.002 -12.404 -11.349 -10.056 -12.809 1.999 D 202 198 6 203 6 0 0 1155 2467 -19.015 -17.714 -13.511 -14.193 -14.210 -0.000 IL 203 203 5 203 6 1 5 1075 2387 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 4 1078 2390 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 53 154 u a - - MP 205 204 6 209 6 2 4 1057 2369 -19.113 -7.233 -0.021 -6.959 -18.108 -18.503 -15.168 -15.005 -14.863 0.924 -13.470 -15.328 1.641 -14.257 -10.001 1.631 -15.153 -12.740 2.979 -15.231 -10.132 -10.221 ML 206 204 6 209 6 1 4 1055 2367 -15.063 -15.409 -0.002 -9.818 -15.259 -12.789 -11.483 -10.179 -12.956 2.000 MR 207 204 6 209 6 1 1 1156 2468 -15.483 -14.212 -10.121 -14.190 -9.324 -0.004 -11.349 -10.056 -12.809 1.999 D 208 204 6 209 6 0 0 1155 2467 -19.015 -17.714 -13.511 -14.193 -14.210 -0.000 IL 209 209 5 209 6 1 3 1072 2384 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 3 1055 2367 -7.790 -0.010 -11.301 -9.469 -10.575 0.000 0.000 0.000 0.000 [ MATP 37 ] 54 152 G C - - MP 211 210 6 215 6 2 3 1054 2366 -19.148 -19.087 -0.390 -2.077 -18.144 -18.539 -14.457 -13.216 -14.256 -4.687 -14.388 -14.877 1.774 -14.488 -14.474 3.431 -14.765 -0.731 -5.120 -4.731 -4.415 0.058 ML 212 210 6 215 6 1 2 1155 2467 -13.041 -13.388 -8.102 -0.007 -13.237 -10.767 -6.929 -8.700 1.994 -7.691 MR 213 210 6 215 6 1 2 1013 2325 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 214 210 6 215 6 0 0 1155 2467 -19.626 -18.325 -14.122 -14.804 -14.821 -0.000 IL 215 215 5 215 6 1 2 996 2308 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 2 956 2268 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 55 151 c g - - MP 217 216 6 221 4 2 4 280 1592 -17.987 -18.194 -0.000 -16.608 -5.220 -12.747 -13.067 1.102 -11.953 -13.904 2.535 -12.600 -12.934 2.443 -13.443 -7.171 0.769 -13.245 -0.182 -11.651 ML 218 216 6 221 4 1 1 1154 2466 -15.078 -0.047 -11.827 -4.963 0.229 -5.933 1.491 -11.892 MR 219 216 6 221 4 1 1 977 2289 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 220 216 6 221 4 0 0 1155 2467 -15.048 -0.001 -12.745 -11.000 IL 221 221 5 221 4 1 1 1066 2378 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 5 1155 2467 -0.020 -6.164 -21.214 0.000 0.000 0.000 0.000 [ MATL 39 ] 56 - U - - - ML 223 222 6 225 3 1 2 12 30 -19.406 -0.000 -18.060 -0.645 0.303 -7.044 1.084 D 224 222 6 225 3 0 0 13 32 -13.719 -9.232 -0.003 IL 225 225 3 225 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 57 - U - - - ML 226 225 3 228 3 1 1 11 29 -19.406 -0.000 -18.060 -1.008 -4.751 -13.259 1.793 D 227 225 3 228 3 0 0 12 31 -13.719 -0.005 -8.111 IL 228 228 3 228 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 58 - g - - - ML 229 228 3 231 3 1 1 9 28 -19.416 -0.000 -18.070 -0.027 -0.512 0.554 -0.236 D 230 228 3 231 3 0 0 17 35 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 59 - g - - - ML 232 231 3 234 3 1 1 8 27 -19.416 -0.000 -18.070 -0.497 -0.498 0.572 0.134 D 233 231 3 234 3 0 0 16 34 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 60 - g - - - ML 235 234 3 237 3 1 1 7 25 -19.416 -0.000 -18.070 -0.130 -0.498 0.457 0.008 D 236 234 3 237 3 0 0 15 33 -6.174 -1.687 -0.566 IL 237 237 3 237 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 61 - G - - - ML 238 237 3 240 3 1 1 5 24 -19.416 -0.000 -18.070 -1.539 -0.773 1.612 -6.064 D 239 237 3 240 3 0 0 13 32 -6.174 -1.687 -0.566 IL 240 240 3 240 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 62 - A - - - ML 241 240 3 243 2 1 1 1 1 * 0.000 1.016 -2.296 -0.165 -0.180 D 242 240 3 243 2 0 0 0 0 * 0.000 IL 243 243 3 243 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 244 243 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Pro ACC bact-Pro-r2-022416 LENG 77 MAXL 1105 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 19:10:31 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Pro-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Pro-r2-022416.sto NSEQ 10621 EFFN 11.189985 CKSUM 2863414592 STATS LOCAL MSV -8.5614 0.71895 STATS LOCAL VITERBI -9.3039 0.71895 STATS LOCAL FORWARD -3.3951 0.71895 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52859 1.35492 1.22313 1.46584 1.38629 1.38629 1.38629 1.38629 0.15022 4.87219 2.02631 1.46634 0.26236 0.00000 * 1 2.76707 0.43156 2.04362 1.84454 1 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01764 4.73961 4.73961 1.46634 0.26236 0.10990 2.26263 2 2.36971 3.13618 0.23226 2.65493 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01513 4.89187 4.89187 1.46634 0.26236 1.09861 0.40547 3 1.86150 2.68591 0.32664 2.89941 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05479 3.08318 4.89187 1.32394 0.30936 1.09861 0.40547 4 1.71038 2.17959 0.50295 2.28896 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05652 4.89187 3.04823 1.46634 0.26236 1.09861 0.40547 5 1.29890 2.36972 0.58583 2.56375 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02267 4.85115 4.22689 1.46634 0.26236 2.11861 0.12806 6 1.48676 1.29855 2.11174 0.96775 11 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02687 3.98256 4.84435 0.70140 0.68496 0.28340 1.39925 7 1.54050 2.80700 0.47520 2.26739 13 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03553 4.88989 3.59791 1.46634 0.26236 1.18388 0.36541 8 3.33888 3.33787 3.57200 0.10435 14 U - - , 1.38629 1.38629 1.38629 1.38629 0.01542 4.87324 4.87324 1.46634 0.26236 0.41337 1.08299 9 0.32093 3.44552 1.59974 3.20169 15 A - - , 1.38629 1.38629 1.38629 1.38629 0.01597 4.89935 4.78059 1.46634 0.26236 1.09861 0.40547 10 2.17095 2.68749 0.28974 2.66760 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03787 4.33842 3.72537 0.90856 0.51601 1.13979 0.38550 11 2.64729 0.29742 2.62824 2.16964 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02162 4.88163 4.28318 1.46634 0.26236 1.67858 0.20658 12 2.24444 2.04754 0.74468 1.23762 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.01538 4.87539 4.87539 1.46634 0.26236 1.82087 0.17660 13 2.23703 0.48751 2.25475 1.74771 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.06363 2.92245 4.84725 1.42280 0.27581 0.96873 0.47733 14 0.10462 3.53073 3.51301 3.21278 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01523 4.88539 4.88539 1.46634 0.26236 1.58127 0.23031 15 3.09929 4.26345 0.07756 4.16849 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02239 4.88539 4.22748 1.46634 0.26236 1.53254 0.24333 16 1.99323 0.76905 2.96227 1.05385 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.09330 4.87872 2.50752 1.46634 0.26236 1.74780 0.19135 17 2.22210 1.19623 3.23604 0.59790 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32471 4.16809 1.34025 0.85308 0.55530 2.73775 0.06690 18 2.57899 1.91278 3.13862 0.31042 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02225 4.50954 4.50954 1.46634 0.26236 0.05340 2.95652 19 3.75151 5.07838 0.04425 4.29953 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01506 4.89630 4.89630 1.46634 0.26236 1.22638 0.34722 20 4.02061 5.39382 0.03071 4.85918 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01506 4.89630 4.89630 1.46634 0.26236 1.22638 0.34722 21 2.82534 2.11510 2.96907 0.26300 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.38657 1.16110 4.89631 0.48672 0.95358 1.22638 0.34722 22 0.14902 3.21471 2.73796 3.39394 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04722 3.49046 4.15839 1.34347 0.30238 1.19823 0.35915 23 1.90481 2.49459 0.43022 2.13496 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04563 4.88833 3.29493 1.46634 0.26236 0.97311 0.47466 24 1.31898 0.79637 1.90564 2.01813 46 c - - > 1.38629 1.38629 1.38629 1.38629 0.06465 2.90254 4.86369 0.26096 1.47103 0.44765 1.01924 25 2.33712 2.72609 0.27886 2.50993 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89353 4.89353 1.46634 0.26236 1.32961 0.30731 26 3.02422 0.36619 2.45715 1.75820 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89353 4.89353 1.46634 0.26236 0.75324 0.63646 27 0.56622 2.57171 1.28157 2.54687 50 A - - , 1.38629 1.38629 1.38629 1.38629 0.09641 4.89935 2.47152 1.46634 0.26236 1.09861 0.40547 28 1.93683 0.83992 1.95730 1.26282 51 c - - < 1.38629 1.38629 1.38629 1.38629 0.04151 4.81923 3.42375 1.46634 0.26236 0.87122 0.54204 29 2.29514 0.79761 2.15898 1.09840 52 c - - < 1.38629 1.38629 1.38629 1.38629 0.01608 4.83160 4.83160 1.46634 0.26236 2.46738 0.08862 30 1.98895 1.36339 1.59403 0.90569 53 u - - < 1.38629 1.38629 1.38629 1.38629 0.01608 4.83160 4.83160 1.46634 0.26236 2.46738 0.08862 31 2.17365 1.79829 0.49146 2.21710 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.01608 4.83160 4.83160 1.46634 0.26236 2.46738 0.08862 32 1.74907 1.26351 1.11636 1.53279 55 g - - < 1.38629 1.38629 1.38629 1.38629 0.02262 4.83160 4.24111 1.46634 0.26236 0.18586 1.77424 33 1.70097 1.22954 2.97047 0.74700 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01511 4.89334 4.89334 1.46634 0.26236 1.33628 0.30492 34 2.14816 3.09875 3.74595 0.20508 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01511 4.89334 4.89334 1.46634 0.26236 0.74579 0.64314 35 1.31386 1.71415 1.20227 1.38393 58 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01501 4.89935 4.89935 1.46634 0.26236 1.09861 0.40547 36 1.47250 1.70251 1.19659 1.25107 59 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01501 4.89935 4.89935 1.46634 0.26236 1.09861 0.40547 37 1.34754 1.70136 1.26177 1.29268 60 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01501 4.89935 4.89935 1.46634 0.26236 1.09861 0.40547 38 2.10110 2.09402 0.35314 2.95639 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01501 4.89935 4.89935 1.46634 0.26236 1.09861 0.40547 39 0.83974 2.23105 1.56394 1.38050 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.30881 1.37741 4.30887 4.25078 0.01436 1.09861 0.40547 40 1.72129 1.30503 0.99617 1.71086 151 g - - > 1.38629 1.38629 1.38629 1.38629 0.08436 4.89334 2.61182 1.46634 0.26236 1.33628 0.30492 41 2.80842 0.57248 1.70960 1.63663 152 C - - > 1.38629 1.38629 1.38629 1.38629 0.04898 4.31478 3.36874 0.94773 0.49040 0.95613 0.48512 42 0.99980 1.67489 1.26981 1.80891 154 a - - > 1.38629 1.38629 1.38629 1.38629 0.01611 4.82957 4.82957 1.46634 0.26236 2.48867 0.08667 43 1.22110 2.36269 0.73160 2.04182 155 g - - > 1.38629 1.38629 1.38629 1.38629 0.01611 4.82957 4.82957 1.46634 0.26236 2.48867 0.08667 44 1.34421 2.23024 0.73283 1.88912 156 g - - > 1.38629 1.38629 1.38629 1.38629 0.01611 4.82957 4.82957 1.46634 0.26236 1.03224 0.44038 45 1.26729 2.28552 0.81698 1.74341 157 g - - , 1.38629 1.38629 1.38629 1.38629 0.01573 4.85553 4.85057 1.46634 0.26236 0.25935 1.47644 46 2.19711 3.24150 0.24974 2.64830 158 G - - , 1.38629 1.38629 1.38629 1.38629 0.17176 1.89467 4.89933 2.21589 0.11547 1.09531 0.40712 47 2.46311 3.55750 0.16886 3.17748 179 G - - , 1.38629 1.38629 1.38629 1.38629 0.10812 4.36400 2.41068 0.92782 0.50321 1.09861 0.40547 48 2.69425 2.21349 2.71270 0.27875 181 U - - , 1.38629 1.38629 1.38629 1.38629 0.01637 4.81347 4.81347 1.46634 0.26236 0.39271 1.12462 49 3.41159 0.13892 3.13664 2.93208 182 C - - , 1.38629 1.38629 1.38629 1.38629 0.01531 4.88008 4.88008 1.46634 0.26236 1.71588 0.19821 50 2.19368 3.11824 0.22001 3.17617 183 G - - < 1.38629 1.38629 1.38629 1.38629 0.01531 4.88008 4.88008 1.46634 0.26236 1.71588 0.19821 51 2.22890 1.00623 1.34655 1.32192 184 c - - < 1.38629 1.38629 1.38629 1.38629 0.01531 4.88008 4.88008 1.46634 0.26236 1.71588 0.19821 52 0.83743 2.40543 1.02426 2.13800 185 a - - < 1.38629 1.38629 1.38629 1.38629 0.02154 4.88008 4.28959 1.46634 0.26236 1.71588 0.19821 53 2.13136 2.97602 0.26009 2.82432 186 G - - < 1.38629 1.38629 1.38629 1.38629 0.02088 4.87395 4.34087 1.46634 0.26236 1.85104 0.17088 54 3.68946 4.84276 0.04463 4.53022 187 G - - < 1.38629 1.38629 1.38629 1.38629 0.01896 4.86855 4.50075 1.46634 0.26236 1.95595 0.15249 55 3.70133 3.73928 4.41368 0.06248 188 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02084 4.34971 4.86513 0.94369 0.49297 1.42643 0.27465 56 3.63487 3.45903 3.96826 0.07986 190 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87132 4.87132 1.46634 0.26236 0.51582 0.90885 57 4.27867 0.05261 4.48031 3.64738 191 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01509 4.89409 4.89409 1.46634 0.26236 1.30946 0.31466 58 0.77302 3.87953 0.71177 3.61396 192 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01509 4.89409 4.89409 1.46634 0.26236 0.77638 0.61631 59 0.02529 4.98430 4.60903 4.80806 193 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02012 4.38428 4.89935 0.94397 0.49279 1.09861 0.40547 60 0.22574 3.10275 2.28646 2.89096 195 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.89935 4.52811 1.46634 0.26236 1.09861 0.40547 61 3.34390 2.49048 3.72278 0.15354 196 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04016 4.89600 3.44538 1.46634 0.26236 0.86700 0.54509 62 4.52764 0.05613 4.69156 3.36382 197 C - - > 1.38629 1.38629 1.38629 1.38629 0.01539 4.87472 4.87472 1.46634 0.26236 1.30201 0.31743 63 3.08315 0.28989 2.76409 1.94628 198 C - - > 1.38629 1.38629 1.38629 1.38629 0.01531 4.88008 4.88008 1.46634 0.26236 1.71588 0.19821 64 2.28879 1.10731 2.24515 0.77164 199 u - - > 1.38629 1.38629 1.38629 1.38629 0.01531 4.88008 4.88008 1.46634 0.26236 1.71588 0.19821 65 1.63366 1.54246 0.84010 1.83717 200 g - - > 1.38629 1.38629 1.38629 1.38629 0.01531 4.88008 4.88008 1.46634 0.26236 1.71588 0.19821 66 3.40230 0.90810 2.96149 0.67007 201 U - - > 1.38629 1.38629 1.38629 1.38629 0.01761 4.87805 4.62083 1.46634 0.26236 0.44568 1.02273 67 2.38196 0.50545 2.63054 1.45948 202 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01508 4.89516 4.89516 1.46634 0.26236 1.18933 0.36301 68 1.15243 2.26426 1.16157 1.31964 203 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01508 4.89518 4.89518 1.46634 0.26236 1.19112 0.36224 69 2.85809 0.67400 2.35461 1.08463 204 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01508 4.89516 4.89516 1.46634 0.26236 1.19112 0.36224 70 2.38545 0.66852 1.95532 1.37056 205 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01509 4.89421 4.89421 1.46634 0.26236 1.19112 0.36224 71 3.08798 0.33288 2.54188 1.83991 206 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01511 4.89285 4.89285 1.46634 0.26236 0.93589 0.49797 72 2.91985 0.27091 2.91448 2.04682 207 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01508 4.89503 4.89503 1.46634 0.26236 1.09861 0.40547 73 2.19511 1.84526 0.44215 2.43028 208 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03845 3.49870 4.89503 0.43787 1.03680 1.09861 0.40547 74 0.20327 3.28364 2.64296 2.58628 210 A - - : 1.38629 1.38629 1.38629 1.38629 0.11797 4.64819 2.28577 1.46634 0.26236 1.09861 0.40547 75 4.40762 0.04423 4.84245 3.76393 211 C - - : 1.38629 1.38629 1.38629 1.38629 0.02133 4.55155 4.55155 1.46634 0.26236 2.53502 0.08258 76 4.40762 0.04423 4.84245 3.76393 212 C - - : 1.38629 1.38629 1.38629 1.38629 0.02133 4.55155 4.55155 1.46634 0.26236 2.53502 0.08258 77 0.03543 4.65836 4.28318 4.46308 213 A - - : 1.38629 1.38629 1.38629 1.38629 0.01072 4.54095 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-SeC ACC bact-SeC-043016 STATES 304 NODES 77 CLEN 95 W 111 ALPH RNA RF yes CONS yes MAP yes DATE Sat Apr 30 15:16:09 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/bact-SeC-043016.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/bact-SeC.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 59 EFFN 59.000000 CKSUM 3815334794 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4186 0.71863 ECMLC 0.76623 -6.89800 1.57419 1600000 791504 0.001516 ECMGC 0.34091 -49.28657 -35.94677 1600000 37763 0.010592 ECMLI 0.70546 -7.59235 1.57579 1600000 772822 0.001553 ECMGI 0.36343 -43.70338 -31.27906 1600000 36564 0.010940 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 111 129 -10.854 -12.100 -0.005 -8.553 IL 1 1 2 1 4 22 55 112 131 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 57 113 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 109 - A - * MR 3 2 3 5 3 28 61 111 129 -12.268 -0.001 -10.586 1.970 -4.008 -6.760 -6.653 D 4 2 3 5 3 18 50 109 128 -6.390 -1.568 -0.620 IR 5 5 3 5 3 23 56 112 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 108 - C - * MR 6 5 3 8 3 27 60 110 128 -12.268 -0.001 -10.586 -7.477 1.993 -7.951 -6.500 D 7 5 3 8 3 17 49 108 127 -6.390 -1.568 -0.620 IR 8 8 3 8 3 22 55 111 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 107 - C - * MR 9 8 3 11 3 27 59 109 127 -12.268 -0.001 -10.586 -7.477 1.993 -7.951 -6.500 D 10 8 3 11 3 17 48 107 126 -6.390 -1.568 -0.620 IR 11 11 3 11 3 22 55 110 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 106 - G - + MR 12 11 3 14 5 26 58 108 126 -10.914 -0.003 -10.730 -10.942 -11.834 -6.593 -8.359 1.993 -7.354 D 13 11 3 14 5 16 47 106 125 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 20 52 108 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 105 G C = = MP 15 14 3 19 6 26 58 107 125 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.653 -6.516 -11.223 -0.617 -11.382 -7.757 -5.798 -10.961 -7.868 3.929 -8.088 -4.403 -6.133 -8.193 -8.197 -10.039 ML 16 14 3 19 6 18 49 105 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 18 49 105 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 14 44 103 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 19 51 107 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 20 51 106 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 104 G C = = MP 21 20 6 25 6 26 56 105 123 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883 3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 ML 22 20 6 25 6 17 49 103 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 17 48 103 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 13 44 101 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 19 50 104 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 19 51 104 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 103 A U = = MP 27 26 6 31 6 24 54 103 121 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -7.805 -6.475 -7.943 3.398 -9.490 -10.295 -0.786 -8.013 -7.589 2.239 -8.210 -3.798 -5.131 -8.950 -6.845 -6.587 ML 28 26 6 31 6 17 48 101 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 17 48 101 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 13 43 99 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 18 50 102 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 19 50 102 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 102 A U = = MP 33 32 6 37 6 22 52 101 119 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -7.870 -6.531 -8.065 3.645 -10.203 -11.351 -5.660 -8.108 -7.626 0.964 -8.296 0.538 -5.587 -9.368 -7.491 -6.664 ML 34 32 6 37 6 17 47 99 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 16 47 99 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 13 43 97 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 18 49 101 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 18 49 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 101 G C = = MP 39 38 6 43 6 20 50 99 117 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.443 -6.509 -10.626 -0.355 -11.243 -7.827 -5.760 -10.498 -7.848 3.888 -8.093 -1.518 -6.063 -8.224 -8.109 -9.375 ML 40 38 6 43 6 16 47 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 16 46 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 12 42 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 17 48 99 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 18 48 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 100 u a = = MP 45 44 6 49 6 18 48 97 115 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.499 -6.143 -6.475 2.170 -5.387 -7.288 1.958 -6.027 -6.359 1.439 -6.852 -3.723 2.185 -6.667 -2.861 -5.085 ML 46 44 6 49 6 15 46 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 15 45 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 12 42 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 16 47 97 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 17 47 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 99 G C = = MP 51 50 6 55 6 16 46 95 113 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.129 -4.886 -5.967 1.372 -6.473 -6.585 1.057 -6.424 -6.313 3.156 -6.602 -2.521 0.772 -5.865 -1.453 -4.878 ML 52 50 6 55 6 14 45 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 14 44 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 12 42 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 15 45 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 15 45 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 98 c g = = MP 57 56 6 61 4 14 44 93 111 -11.053 -11.260 -0.023 -6.045 -4.199 -4.344 -4.372 1.743 -4.157 -5.222 2.289 -1.061 1.349 -0.330 -0.220 -2.795 0.533 -0.070 -2.182 -3.532 ML 58 56 6 61 4 13 43 95 113 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 13 43 94 113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 12 42 93 112 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 14 44 96 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 14 44 95 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - a - + - ML 63 62 6 65 3 12 43 90 109 -11.948 -0.001 -10.603 0.916 -1.542 -0.005 -0.370 D 64 62 6 65 3 11 41 90 108 -7.786 -0.369 -2.178 IL 65 65 3 65 3 13 43 94 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - U - + - ML 66 65 3 68 2 11 42 89 108 -12.610 -0.000 -1.694 -1.716 -2.641 1.690 D 67 65 3 68 2 10 41 89 107 -8.445 -0.004 IL 68 68 3 68 2 12 42 91 109 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 69 68 3 70 179 10 41 88 107 [ BEGL 16 ] - - - - - - S 70 69 1 71 1 0 7 46 65 0.000 [ BIF 17 ] - - - - - - B 71 70 1 72 122 0 7 46 65 [ BEGL 18 ] - - - - - - S 72 71 1 73 4 0 0 27 46 -0.005 -10.033 -9.440 -10.080 [ MATP 19 ] 11 28 C G = = MP 73 72 1 77 6 2 2 27 46 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.624 -6.027 -6.597 1.013 -5.740 -7.460 3.194 -6.272 -6.511 1.545 -6.996 -0.499 -1.495 -6.794 -0.470 -5.242 ML 74 72 1 77 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 75 72 1 77 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 76 72 1 77 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 77 77 5 77 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 78 78 6 78 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 12 27 G C = = MP 79 78 6 83 6 2 2 25 44 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.093 -4.726 -5.917 0.560 -7.035 -6.506 1.043 -6.595 -6.331 3.433 -6.583 -0.132 -2.374 -5.773 -1.366 -4.879 ML 80 78 6 83 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 81 78 6 83 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 82 78 6 83 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 83 83 5 83 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 84 84 6 84 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 13 26 u g = = MP 85 84 6 89 6 2 2 23 42 -2.114 -11.892 -0.382 -10.668 -10.948 -11.343 -6.193 -5.480 -6.139 0.053 -5.501 -6.891 1.097 -5.991 -6.179 2.265 -6.618 0.186 0.927 -6.201 2.266 -4.860 ML 86 84 6 89 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 87 84 6 89 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 88 84 6 89 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 89 89 5 89 6 1 1 22 40 -6.690 -6.953 -0.035 -8.608 -9.384 -9.045 0.000 0.000 0.000 0.000 IR 90 90 6 90 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 25 c g = = MP 91 90 6 95 6 2 2 21 39 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -5.911 -5.290 -5.895 1.503 -5.399 -6.655 2.553 -5.851 -5.958 1.913 -6.410 -0.761 -0.626 -1.614 0.840 -4.702 ML 92 90 6 95 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 93 90 6 95 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 94 90 6 95 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 95 95 5 95 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 96 96 6 96 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 24 c g = = MP 97 96 6 101 6 2 2 19 37 -5.397 -11.892 -0.037 -10.668 -10.948 -11.343 -4.678 -4.760 -1.078 -0.564 -4.449 -5.679 2.540 -4.924 -4.841 0.305 -0.360 0.088 1.568 -4.980 1.301 -1.808 ML 98 96 6 101 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 99 96 6 101 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 100 96 6 101 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 101 101 5 101 6 1 1 19 37 -3.989 -4.252 -0.242 -5.907 -6.683 -6.343 0.000 0.000 0.000 0.000 IR 102 102 6 102 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 23 C G = = MP 103 102 6 107 4 2 2 17 35 -11.053 -11.260 -0.003 -9.674 -11.491 -11.735 -8.283 -8.627 -6.530 -7.823 3.996 -10.677 -11.490 -8.477 -7.850 -10.546 -6.497 -11.672 -7.488 -10.262 ML 104 102 6 107 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 105 102 6 107 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 106 102 6 107 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 107 107 5 107 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 108 108 6 108 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - U - + - ML 109 108 6 111 3 1 1 13 32 -11.969 -0.001 -10.623 -6.041 0.969 -7.095 1.014 D 110 108 6 111 3 0 0 16 34 -6.174 -1.687 -0.566 IL 111 111 3 111 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - G - + - ML 112 111 3 114 3 1 1 12 30 -11.969 -0.001 -10.623 -6.593 -8.359 1.993 -7.354 D 113 111 3 114 3 0 0 15 33 -6.174 -1.687 -0.566 IL 114 114 3 114 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - G - + - ML 115 114 3 117 3 1 1 10 29 -11.969 -0.001 -10.623 -6.593 -8.359 1.993 -7.354 D 116 114 3 117 3 0 0 13 32 -6.174 -1.687 -0.566 IL 117 117 3 117 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - U - + - ML 118 117 3 120 2 1 1 1 1 * 0.000 -8.197 -7.345 -9.248 1.996 D 119 117 3 120 2 0 0 0 0 * 0.000 IL 120 120 3 120 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 121 120 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 122 71 1 123 3 0 0 29 48 -11.969 -0.001 -10.623 IL 123 123 2 123 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - C - + - ML 124 123 2 126 5 1 1 29 48 -10.914 -0.036 -5.405 -10.942 -11.834 -2.636 1.073 0.383 -1.216 D 125 123 2 126 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 126 126 3 126 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 48 C G = = MP 127 126 3 131 6 2 2 28 47 -11.921 -3.450 -0.141 -10.637 -10.917 -11.312 -6.761 -6.317 -6.748 -0.863 -5.707 -7.652 3.613 -6.295 -6.589 -0.002 -7.097 -0.513 -0.558 -7.026 -3.186 -0.666 ML 128 126 3 131 6 1 1 27 45 -7.852 -8.198 -0.316 -2.607 -8.048 -5.578 -1.131 -2.274 1.594 -1.658 MR 129 126 3 131 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 3 131 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 27 46 -4.678 -0.090 -8.189 -6.357 -7.462 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 45 c g = = MP 133 132 6 137 6 2 2 26 44 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.887 -6.618 -6.807 0.775 -5.597 -7.535 2.857 -6.291 -6.696 -0.696 -7.155 -4.220 2.618 -7.041 -3.102 -5.428 ML 134 132 6 137 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 44 G C = = MP 139 138 6 143 6 2 2 24 42 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.575 -6.515 -10.984 -0.027 -11.334 -7.785 -5.789 -10.774 -7.862 3.898 -8.092 -4.386 -6.112 -8.208 -8.170 -9.765 ML 140 138 6 143 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 43 G C = = MP 145 144 6 149 6 2 2 22 40 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883 3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 ML 146 144 6 149 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 148 144 6 149 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 149 149 5 149 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 150 150 6 150 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 42 a u = = MP 151 150 6 155 4 2 2 20 38 -11.053 -11.260 -0.003 -9.674 -7.875 -6.583 -8.018 2.967 -9.183 -10.534 -4.704 -2.228 -7.630 1.009 -8.262 -3.888 2.536 -9.161 -6.640 -6.642 ML 152 150 6 155 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 153 150 6 155 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 154 150 6 155 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 155 155 5 155 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 156 156 6 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - C - + - ML 157 156 6 159 3 1 1 17 36 -11.969 -0.001 -10.623 -6.606 1.827 -7.201 -1.204 D 158 156 6 159 3 0 0 19 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - + - ML 160 159 3 162 3 1 1 16 34 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 161 159 3 162 3 0 0 18 36 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - U - * - ML 163 162 3 165 3 1 1 15 33 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 164 162 3 165 3 0 0 17 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - C - * - ML 166 165 3 168 3 1 1 13 32 -11.969 -0.001 -10.623 -7.477 1.993 -7.951 -6.500 D 167 165 3 168 3 0 0 16 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - A - * - ML 169 168 3 171 3 1 1 12 30 -11.969 -0.001 -10.623 1.994 -8.093 -7.361 -7.495 D 170 168 3 171 3 0 0 15 33 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - A - + - ML 172 171 3 174 3 1 1 10 29 -11.969 -0.001 -10.623 1.994 -8.093 -7.361 -7.495 D 173 171 3 174 3 0 0 13 32 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 41 - A - + - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.957 -3.403 -6.583 -6.404 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 45 ] - - - - - - S 179 69 1 180 3 0 9 53 71 -11.969 -0.033 -5.504 IL 180 180 2 180 3 1 11 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - U - + - ML 181 180 2 183 2 1 10 53 71 -2.748 -0.233 -1.623 -2.634 -1.279 1.633 D 182 180 2 183 2 0 8 52 70 -8.698 -0.003 IL 183 183 3 183 2 1 10 53 71 -2.556 -0.269 0.000 0.000 0.000 0.000 [ BIF 47 ] - - - - - - B 184 183 3 185 247 0 8 52 70 [ BEGL 48 ] - - - - - - S 185 184 1 186 4 0 0 33 50 -0.064 -4.599 -9.440 -10.080 [ MATP 49 ] 52 79 u g = = MP 186 185 1 190 6 2 2 33 50 -11.895 -11.834 -0.112 -3.774 -10.891 -11.286 -3.314 -3.527 -1.907 -0.327 -3.502 -4.363 0.281 -3.861 -0.457 1.216 -2.263 1.059 1.517 -1.526 1.987 -0.302 ML 187 185 1 190 6 1 1 32 49 -8.489 -8.835 -0.195 -3.244 -8.685 -6.214 -2.304 1.746 -3.135 -1.606 MR 188 185 1 190 6 1 1 32 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 1 190 6 0 0 30 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 190 190 5 190 6 1 1 33 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 33 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 78 g c = = MP 192 191 6 196 6 2 2 31 48 -1.956 -11.787 -0.434 -10.564 -10.844 -11.239 -5.908 -0.637 -5.728 1.218 -6.847 -6.325 0.050 -6.415 -6.164 2.760 -6.412 1.923 -1.086 -5.583 -1.238 -1.268 ML 193 191 6 196 6 1 1 29 47 -9.186 -9.532 -0.117 -3.941 -9.382 -6.912 0.254 -2.403 1.230 -1.872 MR 194 191 6 196 6 1 1 29 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 27 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 196 196 5 196 6 1 1 30 47 -2.745 -7.223 -0.253 -8.878 -9.655 -9.315 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 30 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 77 g c = = MP 198 197 6 202 6 2 2 28 46 -11.952 -11.892 -0.038 -10.668 -5.341 -11.343 -6.032 -4.676 -5.853 1.897 -6.949 -6.454 0.239 -6.528 -6.282 2.977 -6.533 -0.036 1.004 -5.712 -4.035 -4.814 ML 199 197 6 202 6 1 1 27 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 27 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 202 202 5 202 6 1 1 29 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 76 G C = = MP 204 203 6 208 6 2 2 26 44 -2.546 -11.856 -0.274 -10.633 -10.913 -11.308 -6.021 -4.666 -1.836 -0.438 -6.934 -6.446 1.004 -6.514 -6.268 3.426 -6.521 -0.383 -2.285 -5.705 0.122 -4.803 ML 205 203 6 208 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 24 42 -8.575 -7.304 -0.368 -7.282 -2.416 -5.496 -1.302 -2.476 1.650 -1.861 D 207 203 6 208 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 208 208 5 208 6 1 1 25 43 -6.253 -0.775 -1.808 -3.158 -8.947 -8.608 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 25 42 -4.853 -0.079 -8.364 -6.532 -7.638 0.000 0.000 0.000 0.000 [ MATP 53 ] 59 74 g u = = MP 210 209 6 214 6 2 2 24 41 -11.924 -11.863 -0.003 -10.640 -10.919 -11.314 -6.996 -6.053 -6.806 -2.301 -6.317 -7.410 0.707 -6.762 -6.968 1.996 -0.819 2.985 0.312 -6.888 -1.485 -5.636 ML 211 209 6 214 6 1 1 23 40 -7.775 -8.121 -0.335 -2.529 -7.971 -5.500 -1.027 -2.151 1.555 -1.535 MR 212 209 6 214 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 213 209 6 214 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 214 214 5 214 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 215 215 6 215 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 60 73 c g = = MP 216 215 6 220 6 2 2 22 39 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -4.593 -4.591 -4.737 0.767 -4.483 -0.671 2.458 -4.910 -4.782 1.660 -5.327 0.814 0.687 -1.009 -0.285 -3.836 ML 217 215 6 220 6 1 1 21 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 218 215 6 220 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 219 215 6 220 6 0 0 19 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 220 220 5 220 6 1 1 22 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 221 221 6 221 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 61 72 c g = = MP 222 221 6 226 6 2 2 20 37 -11.952 -11.892 -0.036 -5.407 -10.948 -11.343 -5.843 -5.507 -5.877 1.185 -5.134 -6.691 2.466 -5.685 -5.848 2.030 -1.026 -0.448 1.083 -6.005 -0.761 -4.652 ML 223 221 6 226 6 1 1 19 36 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 224 221 6 226 6 1 1 19 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 225 221 6 226 6 0 0 17 34 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 226 226 5 226 6 1 1 20 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 227 227 6 227 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 62 71 G C = = MP 228 227 6 232 4 2 2 18 35 -11.016 -0.895 -1.119 -9.637 -5.917 -0.575 -5.763 0.138 -1.535 0.028 -0.121 -6.371 -6.156 3.232 -6.433 -2.305 0.016 -5.642 0.266 -4.727 ML 229 227 6 232 4 1 1 17 34 -5.155 -5.337 -0.172 -4.067 1.638 -2.044 -1.709 -1.556 MR 230 227 6 232 4 1 1 18 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 231 227 6 232 4 0 0 17 34 -4.568 -4.250 -2.265 -0.520 IL 232 232 5 232 4 1 1 19 36 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 233 233 6 233 3 1 1 16 34 -2.105 -0.386 -8.850 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - u - + - ML 234 233 6 236 3 1 1 13 32 -11.969 -0.001 -10.623 -2.331 0.086 0.408 0.499 D 235 233 6 236 3 0 0 16 34 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - c - + - ML 237 236 3 239 3 1 1 12 30 -11.969 -0.035 -5.390 -0.171 0.859 -1.009 -0.320 D 238 236 3 239 3 0 0 14 33 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - A - + - ML 240 239 3 242 3 1 1 10 29 -11.935 -0.001 -10.589 1.518 -5.822 0.003 -3.097 D 241 239 3 242 3 0 0 12 30 -8.327 -0.243 -2.718 IL 242 242 3 242 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - g - + - ML 243 242 3 245 2 1 1 1 1 * 0.000 0.133 -2.553 0.891 -0.187 D 244 242 3 245 2 0 0 0 0 * 0.000 IL 245 245 3 245 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 246 245 3 -1 0 0 0 0 0 [ BEGR 62 ] - - - - - - S 247 184 1 248 3 0 0 29 48 -11.969 -0.001 -10.623 IL 248 248 2 248 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 80 - G - + - ML 249 248 2 251 5 1 1 29 47 -10.914 -0.003 -10.730 -10.942 -11.834 -6.593 -8.359 1.993 -7.354 D 250 248 2 251 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 251 251 3 251 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 81 97 g u = = MP 252 251 3 256 6 2 2 28 46 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -7.972 -6.523 -8.192 -0.967 -10.265 -10.229 -5.646 -8.236 -7.645 2.908 -8.267 2.981 -5.612 -9.169 -7.524 -6.796 ML 253 251 3 256 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 254 251 3 256 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 255 251 3 256 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 256 256 5 256 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 257 257 6 257 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 82 96 U A = = MP 258 257 6 262 6 2 2 26 44 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.758 -6.494 -6.696 0.146 -5.499 -7.443 1.670 -6.188 -6.580 -2.118 -7.051 -0.631 3.149 -6.915 0.884 -5.310 ML 259 257 6 262 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 260 257 6 262 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 261 257 6 262 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 262 262 5 262 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 263 263 6 263 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 83 95 G C = = MP 264 263 6 268 6 2 2 24 42 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -6.601 -2.343 -6.474 2.079 -7.643 -7.018 0.375 -7.090 -6.710 3.304 -7.001 -2.788 -2.974 -6.341 -4.725 -5.406 ML 265 263 6 268 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 266 263 6 268 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 267 263 6 268 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 268 268 5 268 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 269 269 6 269 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 84 94 G C = = MP 270 269 6 274 6 2 2 22 40 -11.952 -11.892 -0.003 -10.668 -10.948 -11.343 -9.418 -6.513 -10.563 0.693 -11.229 -7.845 -5.765 -10.433 -7.847 3.834 -8.098 -4.350 -6.065 -8.239 -8.107 -9.298 ML 271 269 6 274 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 272 269 6 274 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 273 269 6 274 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 274 274 5 274 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 275 275 6 275 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 68 ] 85 93 G C = = MP 276 275 6 280 4 2 2 20 38 -11.053 -11.260 -0.003 -9.674 -9.849 -6.518 -11.987 -3.977 -11.462 -7.692 -5.802 -11.510 -7.883 3.984 -8.080 -4.443 -6.167 -8.155 -8.239 -10.994 ML 277 275 6 280 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 278 275 6 280 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 279 275 6 280 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 280 280 5 280 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 281 281 6 281 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 86 - U - + - ML 282 281 6 284 3 1 1 17 36 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 283 281 6 284 3 0 0 19 37 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 87 - U - + - ML 285 284 3 287 3 1 1 16 34 -11.969 -0.001 -10.623 -8.197 -7.345 -9.248 1.996 D 286 284 3 287 3 0 0 18 36 -6.174 -1.687 -0.566 IL 287 287 3 287 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 88 - C - + - ML 288 287 3 290 3 1 1 15 33 -11.969 -0.001 -10.623 -7.477 1.993 -7.951 -6.500 D 289 287 3 290 3 0 0 17 35 -6.174 -1.687 -0.566 IL 290 290 3 290 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 89 - G - + - ML 291 290 3 293 3 1 1 13 32 -11.969 -0.001 -10.623 -3.727 -8.215 1.969 -7.257 D 292 290 3 293 3 0 0 16 34 -6.174 -1.687 -0.566 IL 293 293 3 293 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 90 - A - + - ML 294 293 3 296 3 1 1 12 30 -11.969 -0.001 -10.623 1.994 -8.093 -7.361 -7.495 D 295 293 3 296 3 0 0 15 33 -6.174 -1.687 -0.566 IL 296 296 3 296 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 91 - U - + - ML 297 296 3 299 3 1 1 10 29 -11.969 -0.001 -10.623 -6.046 0.945 -7.094 1.037 D 298 296 3 299 3 0 0 13 32 -6.174 -1.687 -0.566 IL 299 299 3 299 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 92 - U - + - ML 300 299 3 302 2 1 1 1 1 * 0.000 -8.197 -7.345 -9.248 1.996 D 301 299 3 302 2 0 0 0 0 * 0.000 IL 302 302 3 302 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 76 ] - - - - - - E 303 302 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-SeC ACC bact-SeC-043016 LENG 95 MAXL 182 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sat Apr 30 15:16:09 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/bact-SeC-043016.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/bact-SeC-043016.sto NSEQ 59 EFFN 3.482239 CKSUM 3815334794 STATS LOCAL MSV -8.9124 0.71863 STATS LOCAL VITERBI -10.1148 0.71863 STATS LOCAL FORWARD -3.4198 0.71863 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.66423 1.29067 1.20700 1.44188 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 0.00000 * 1 2.51682 3.53042 0.15355 3.43168 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 2 2.90103 3.71406 0.11121 3.65328 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 3 0.92502 2.28596 0.90692 2.32242 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 4 0.57810 2.92068 1.13907 2.73297 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 5 2.36950 3.40108 0.17988 3.27636 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 6 1.57542 1.32246 1.41823 1.25717 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 7 1.68280 1.75148 0.77852 1.70624 7 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 8 1.49307 1.34800 1.42807 1.28812 8 u = - ( 1.38629 1.38629 1.38629 1.38629 0.04026 4.20436 3.70767 1.46634 0.26236 1.09861 0.40547 9 0.95473 1.92845 1.50714 1.39364 9 a + - , 1.38629 1.38629 1.38629 1.38629 0.03061 4.19471 4.19471 1.46634 0.26236 0.79620 0.59973 10 1.87718 1.98594 2.40699 0.47861 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 11 1.84206 1.00340 1.39538 1.48219 11 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 12 1.76621 1.94816 0.57985 2.06750 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 13 1.87625 1.48672 1.17653 1.16355 13 u = - < 1.38629 1.38629 1.38629 1.38629 0.22821 1.66540 4.20436 0.15104 1.96476 1.09861 0.40547 14 1.66551 1.25808 1.29139 1.37905 15 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 15 1.70470 1.26567 1.51498 1.15103 16 u = - < 1.38629 1.38629 1.38629 1.38629 0.04875 3.42178 4.20436 0.75100 0.63846 1.09861 0.40547 16 3.68568 0.14598 3.52516 2.50960 18 C = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 17 2.18177 0.95684 2.75488 0.82226 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 18 3.17650 4.11094 0.08708 3.67791 20 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 19 3.17650 4.11094 0.08708 3.67791 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 20 3.06951 2.95784 3.60158 0.13428 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 21 2.78726 3.68937 0.12563 3.45832 23 G = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 22 1.45508 1.78144 0.98021 1.50062 24 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 23 1.73046 1.41834 1.05045 1.46576 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 24 1.65215 1.34323 1.07259 1.58357 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 25 2.36295 0.68186 1.76945 1.47073 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 26 1.75473 1.56667 0.87836 1.59533 28 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 27 1.71003 1.05029 1.40488 1.49652 29 c + - , 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 28 2.04842 0.82246 1.65476 1.42472 30 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 29 1.96949 0.99178 1.90621 1.07613 31 c = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 30 2.35197 3.42118 0.17961 3.30919 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 31 2.89407 3.70428 0.11230 3.64003 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 32 1.30850 1.66748 1.39407 1.22762 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 33 2.70621 0.30695 3.31168 1.82595 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 34 3.06951 2.95784 3.60158 0.13428 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 35 3.06951 2.95784 3.60158 0.13428 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 36 3.42192 0.11483 3.98323 2.86101 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 37 0.09283 3.71958 3.39964 3.47309 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 38 0.09283 3.71958 3.39964 3.47309 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 39 0.16270 3.01192 3.02633 2.94770 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 40 1.37391 1.52864 1.50999 1.17395 42 u = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 41 3.82274 0.13396 3.55772 2.59023 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 42 3.52613 0.20800 3.26227 2.11966 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 43 1.21600 2.07138 0.88765 1.79603 45 g = - > 1.38629 1.38629 1.38629 1.38629 0.12027 2.49733 3.47325 0.33016 1.26871 1.09861 0.40547 44 1.69045 1.88720 0.72574 1.71423 48 g = - > 1.38629 1.38629 1.38629 1.38629 0.04648 4.18814 3.49844 1.46634 0.26236 0.67435 0.71231 45 1.77817 2.07718 2.08493 0.54222 49 U + - , 1.38629 1.38629 1.38629 1.38629 0.14103 2.15087 4.18942 0.37116 1.17097 0.69487 0.69143 46 1.63969 1.54741 1.37539 1.07757 52 u = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 47 1.56670 2.01377 0.69234 1.84909 53 G = - < 1.38629 1.38629 1.38629 1.38629 0.23654 1.63111 4.20436 0.28010 1.40939 1.09861 0.40547 48 1.54517 1.95960 0.74057 1.77805 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.04928 4.20436 3.40642 1.46634 0.26236 1.09861 0.40547 49 1.78762 1.85575 0.65690 1.84612 57 G = - < 1.38629 1.38629 1.38629 1.38629 0.17272 1.94197 4.18596 0.20005 1.70755 0.64212 0.74691 50 1.81870 1.75570 0.74130 1.66874 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 51 1.64840 1.31395 1.27764 1.34634 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 52 1.70380 1.28461 1.23799 1.38118 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 53 1.63474 1.63332 0.96248 1.47941 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 54 1.64062 1.48466 1.40277 1.09767 64 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 55 1.35098 1.14123 1.88639 1.30945 65 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04704 4.20436 3.47325 1.46634 0.26236 1.09861 0.40547 56 0.55666 2.53840 1.49816 2.08468 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03082 4.18814 4.18814 1.46634 0.26236 0.67435 0.71231 57 1.24382 2.08804 1.08804 1.38265 67 g + - _ 1.38629 1.38629 1.38629 1.38629 0.52506 0.97756 3.43415 0.31284 1.31442 1.09861 0.40547 58 1.73525 0.98926 1.46861 1.50712 71 c = - > 1.38629 1.38629 1.38629 1.38629 0.03086 4.18688 4.18688 1.46634 0.26236 0.65536 0.73242 59 1.60608 1.41680 1.10627 1.48700 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 60 1.61032 1.43076 1.16565 1.38899 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.04572 4.20436 3.51465 1.46634 0.26236 1.09861 0.40547 61 1.89254 1.16760 1.53055 1.13388 74 u = - > 1.38629 1.38629 1.38629 1.38629 0.11635 2.35721 4.18942 0.29417 1.36707 0.69487 0.69143 62 2.19512 0.76022 1.58471 1.53209 76 c = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 63 1.97464 0.85370 1.80166 1.30812 77 c = - > 1.38629 1.38629 1.38629 1.38629 0.08602 4.20436 2.69572 1.46634 0.26236 1.09861 0.40547 64 2.16829 0.87475 1.80286 1.19127 78 c = - > 1.38629 1.38629 1.38629 1.38629 0.06458 4.15036 3.06234 1.46634 0.26236 0.36632 1.18181 65 1.42448 1.63972 1.17366 1.36220 79 g = - > 1.38629 1.38629 1.38629 1.38629 0.03125 4.17453 4.17453 1.46634 0.26236 0.51508 0.90995 66 3.17650 4.11094 0.08708 3.67791 80 G + - , 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 67 2.03018 2.99379 0.27538 2.82504 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 68 1.99048 1.26580 1.80734 0.87403 82 u = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 69 1.48793 2.17100 0.58710 2.26183 83 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 70 2.11766 3.27815 0.22374 3.15898 84 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 71 2.90135 3.71452 0.11116 3.65390 85 G = - < 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 72 3.06951 2.95784 3.60158 0.13428 86 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 73 3.06951 2.95784 3.60158 0.13428 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 74 3.42192 0.11483 3.98323 2.86101 88 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 75 2.85284 3.90073 0.11477 3.48935 89 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 76 0.09283 3.71958 3.39964 3.47309 90 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 77 2.18129 0.97152 2.75317 0.80997 91 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 78 3.06951 2.95784 3.60158 0.13428 92 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 79 3.82979 0.13356 3.56114 2.59153 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 80 3.37756 0.25879 3.10249 1.90418 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 81 2.51559 0.65753 2.01780 1.31636 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 82 1.08185 2.04831 1.03490 1.73264 96 g = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 83 3.05973 0.70115 2.79881 0.92582 97 c = - > 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 84 1.40595 1.72009 1.16414 1.33322 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 85 1.93742 0.86247 1.58010 1.47906 99 c = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 86 1.42094 1.54285 1.18867 1.42663 100 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 87 3.48427 0.22009 3.22910 2.06136 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 88 2.95298 1.47856 2.71989 0.42470 102 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 89 2.56447 1.01517 2.12333 0.81856 103 u = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 90 3.84446 0.13274 3.56822 2.59423 104 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 91 3.65102 0.17920 3.37685 2.26391 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 92 3.17650 4.11094 0.08708 3.67791 106 G + - : 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 93 3.42192 0.11483 3.98323 2.86101 107 C * - : 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 94 3.42192 0.11483 3.98323 2.86101 108 C * - : 1.38629 1.38629 1.38629 1.38629 0.03032 4.20436 4.20436 1.46634 0.26236 1.09861 0.40547 95 0.14108 3.18972 3.11453 3.07921 109 A * - : 1.38629 1.38629 1.38629 1.38629 0.01527 4.18931 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Ser ACC bact-Ser-r2-022416 STATES 289 NODES 77 CLEN 90 W 1352 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 19:39:59 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ser-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ser-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Ser-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ser-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17183 EFFN 17183.000000 CKSUM 1476923651 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.9204 0.71888 ECMLC 0.64295 -8.82167 1.08923 1600000 702427 0.001708 ECMGC 0.37270 -28.22054 -16.47593 1600000 31848 0.012560 ECMLI 0.61650 -9.05166 1.21668 1600000 673662 0.001781 ECMGI 0.37906 -24.02471 -12.83722 1600000 27782 0.014398 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 1352 2832 -18.995 -20.240 -0.959 -1.042 IL 1 1 2 1 4 14 40 1356 2836 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 40 1357 2837 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 445 - A - - MR 3 2 3 5 3 17 40 1356 2835 -19.444 -0.000 -17.762 2.000 -15.069 -14.346 -14.399 D 4 2 3 5 3 12 36 1353 2832 -20.455 -15.633 -0.000 IR 5 5 3 5 3 15 40 1356 2836 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 444 - C - - MR 6 5 3 8 3 16 39 1355 2834 -19.444 -0.000 -17.762 -16.237 2.000 -17.527 -14.277 D 7 5 3 8 3 12 36 1353 2832 -20.455 -15.633 -0.000 IR 8 8 3 8 3 15 39 1355 2835 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 443 - C - - MR 9 8 3 11 3 15 38 1354 2833 -19.444 -0.000 -17.762 -16.237 2.000 -17.527 -14.277 D 10 8 3 11 3 12 36 1353 2832 -20.455 -0.002 -9.591 IR 11 11 3 11 3 10 32 1353 2833 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 442 - G - - MR 12 11 3 14 5 14 37 1353 2832 -7.258 -0.177 -18.857 -3.199 -19.961 -1.821 -6.331 1.767 -1.730 D 13 11 3 14 5 8 26 1343 2823 -9.063 -4.418 -1.229 -8.120 -0.940 IR 14 14 3 14 5 13 36 1352 2832 -8.606 -0.265 -12.117 -2.603 -11.391 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 440 G C - - MP 15 14 3 19 6 13 37 1352 2832 -19.802 -19.741 -0.002 -18.518 -18.797 -9.889 -17.477 -14.365 -18.972 -2.554 -19.134 -15.609 -3.622 -18.737 -11.763 3.953 -3.191 -3.038 -5.754 -16.039 -5.959 -17.791 ML 16 14 3 19 6 11 32 1347 2827 -9.219 -9.565 -4.280 -0.096 -9.415 -6.945 -2.986 -2.742 -3.766 1.868 MR 17 14 3 19 6 14 33 1347 2827 -18.196 -16.925 -2.278 -16.903 -0.333 -15.116 -12.633 1.908 -13.159 -2.026 D 18 14 3 19 6 8 25 1338 2818 -12.582 -11.281 -7.078 -7.760 -7.777 -0.025 IL 19 19 5 19 6 10 31 1351 2830 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 10 32 1350 2830 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 439 G C - - MP 21 20 6 25 6 14 36 1350 2830 -19.837 -19.776 -0.018 -8.351 -6.926 -10.291 -17.780 -1.613 -20.160 -5.300 -19.404 -15.551 -3.759 -19.593 -7.529 3.951 -8.888 -4.696 -4.036 -7.560 -16.147 -19.283 ML 22 20 6 25 6 11 32 1346 2826 -9.219 -9.565 -4.280 -0.096 -9.415 -6.945 1.911 -3.937 -3.434 -3.631 MR 23 20 6 25 6 14 31 1345 2825 -17.863 -16.592 -3.856 -16.570 -0.103 -14.783 -11.009 1.992 -5.626 -10.452 D 24 20 6 25 6 8 25 1338 2818 -14.411 -13.109 -8.906 -9.588 -9.605 -0.007 IL 25 25 5 25 6 10 31 1349 2829 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 10 32 1349 2828 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 438 A U - - MP 27 26 6 31 6 15 35 1348 2828 -8.056 -19.768 -0.062 -18.544 -4.695 -19.219 -13.093 -12.804 -13.118 3.815 -17.777 -18.976 -3.668 -2.272 -13.637 -1.226 -16.271 -2.237 -0.149 -13.293 -3.383 -11.306 ML 28 26 6 31 6 12 32 1345 2825 -12.515 -12.861 -2.278 -0.335 -12.711 -10.240 1.994 -7.939 -7.215 -7.353 MR 29 26 6 31 6 13 30 1344 2824 -17.887 -16.616 -12.525 -16.594 -0.000 -14.808 -9.083 -4.989 -3.727 1.960 D 30 26 6 31 6 8 25 1338 2818 -15.049 -13.747 -9.544 -10.226 -10.244 -0.004 IL 31 31 5 31 6 13 34 1347 2827 -8.562 -8.825 -0.009 -10.480 -11.257 -10.917 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 10 31 1347 2827 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 437 G C - - MP 33 32 6 37 6 16 33 1346 2826 -19.773 -19.712 -0.003 -9.109 -18.768 -19.164 -13.993 -6.283 -13.827 0.436 -14.951 -14.319 -2.253 -14.511 -14.180 3.805 -10.584 -6.449 -1.387 -4.548 -6.970 -12.792 ML 34 32 6 37 6 12 30 1344 2823 -12.191 -12.537 -3.086 -0.183 -12.387 -9.916 -1.772 1.468 -1.338 -0.875 MR 35 32 6 37 6 12 29 1343 2823 -18.366 -17.095 -1.847 -17.074 -0.470 -15.287 -11.160 1.981 -5.201 -5.368 D 36 32 6 37 6 8 25 1338 2818 -15.049 -13.747 -9.544 -10.226 -10.244 -0.004 IL 37 37 5 37 6 10 30 1345 2825 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 10 31 1345 2825 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 436 A U - - MP 39 38 6 43 6 14 31 1344 2824 -19.827 -8.107 -0.007 -9.601 -18.822 -19.217 -13.802 -2.312 -13.621 3.442 -6.952 -14.219 -1.593 -8.663 -14.057 1.855 -5.202 -0.459 -2.320 -13.477 -5.899 -12.586 ML 40 38 6 43 6 12 29 1342 2822 -12.799 -13.145 -4.545 -0.065 -12.995 -10.525 1.427 -4.732 -2.455 0.126 MR 41 38 6 43 6 10 28 1341 2821 -17.897 -16.626 -2.433 -16.604 -0.295 -14.817 -9.517 -0.417 -2.272 1.605 D 42 38 6 43 6 8 25 1338 2818 -15.049 -13.747 -5.483 -10.226 -10.244 -0.035 IL 43 43 5 43 6 10 30 1343 2823 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 12 30 1343 2823 -7.634 -0.011 -11.145 -9.313 -10.419 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 434 G C - - MP 45 44 6 49 6 12 29 1342 2822 -7.788 -19.790 -0.061 -18.567 -4.758 -19.242 -13.815 -4.910 -13.633 1.605 -12.188 -14.229 -0.101 -4.825 -8.082 3.407 -5.786 -1.740 -0.391 -11.380 -2.292 -4.071 ML 46 44 6 49 6 11 28 1341 2821 -13.143 -13.489 -0.007 -7.898 -13.339 -10.868 -7.024 -8.795 1.995 -7.786 MR 47 44 6 49 6 9 27 1340 2820 -17.602 -16.331 -2.012 -16.309 -0.411 -14.522 -10.497 1.644 -0.425 -2.947 D 48 44 6 49 6 8 25 1338 2818 -15.018 -13.717 -9.514 -10.196 -10.213 -0.005 IL 49 49 5 49 6 11 28 1341 2821 -8.849 -9.112 -0.008 -10.767 -11.543 -11.203 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 10 28 1341 2821 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 433 g c - - MP 51 50 6 55 4 10 27 1340 2820 -7.848 -19.271 -0.064 -4.674 -13.815 -12.455 -13.634 2.058 -14.754 -14.233 -1.401 -14.318 -5.176 2.976 -13.323 -0.836 1.538 -13.491 -3.354 -12.598 ML 52 50 6 55 4 9 26 1339 2819 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 8 25 1338 2818 -15.914 -14.943 -3.583 -0.126 -8.114 0.141 -11.188 1.533 D 54 50 6 55 4 8 25 1338 2818 -10.442 -10.123 -0.816 -1.217 IL 55 55 5 55 4 10 26 1339 2819 -8.099 -8.783 -0.009 -11.268 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 9 27 1340 2820 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 57 56 6 59 3 9 25 1338 2818 -6.818 -0.013 -18.583 -3.578 -5.856 -5.007 1.952 D 58 56 6 59 3 7 24 1337 2817 -3.422 -0.810 -1.573 IL 59 59 3 59 3 9 26 1339 2819 -1.063 -0.940 -12.715 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - G - - - ML 60 59 3 62 2 8 24 1337 2817 -20.708 -0.000 -0.039 -2.589 1.458 -3.135 D 61 59 3 62 2 7 23 1336 2816 -15.104 -0.000 IL 62 62 3 62 2 8 25 1338 2818 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 64 176 7 23 1336 2816 [ BEGL 15 ] - - - - - - S 64 63 1 65 1 0 2 1301 2780 0.000 [ BIF 16 ] - - - - - - B 65 64 1 66 119 0 2 1301 2780 [ BEGL 17 ] - - - - - - S 66 65 1 67 4 0 1 1056 2344 -0.477 -2.503 -5.760 -3.529 [ MATP 18 ] 16 183 g c - - MP 67 66 1 71 6 2 5 1009 2296 -6.678 -19.433 -0.019 -8.277 -18.490 -18.885 -6.447 -3.665 -8.552 -1.276 -10.889 -4.546 2.759 -13.435 -5.287 2.773 -14.109 -3.280 0.602 -13.725 -3.415 -3.196 ML 68 66 1 71 6 1 2 1114 2401 -18.343 -18.689 -3.966 -0.709 -8.797 -1.635 -2.441 1.569 -1.913 -0.777 MR 69 66 1 71 6 1 3 1110 2398 -15.624 -14.353 -10.261 -14.331 -0.002 -12.544 1.964 -10.050 -3.384 -9.541 D 70 66 1 71 6 0 1 1114 2402 -20.465 -19.163 -14.960 -1.272 -15.660 -0.771 IL 71 71 5 71 6 1 4 1008 2295 -9.594 -0.864 -1.157 -11.512 -12.288 -11.948 0.000 0.000 0.000 0.000 IR 72 72 6 72 5 1 3 1007 2295 -7.868 -0.010 -11.380 -9.547 -10.653 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 181 C G - - MP 73 72 6 77 6 2 3 1006 2293 -9.415 -8.334 -0.009 -18.228 -18.507 -9.423 -2.012 -15.222 -15.112 -2.493 -13.736 -15.611 3.690 -14.516 -15.071 0.256 -15.414 -10.352 0.431 -15.443 -2.953 -13.827 ML 74 72 6 77 6 1 2 1119 2406 -4.803 -18.417 -13.132 -0.085 -18.267 -5.558 0.067 0.953 -1.141 -0.829 MR 75 72 6 77 6 1 2 1109 2397 -15.654 -14.383 -10.292 -14.361 -0.004 -9.209 1.787 -9.288 -0.874 -9.174 D 76 72 6 77 6 0 1 1111 2398 -20.777 -19.475 -15.272 -0.638 -15.972 -1.485 IL 77 77 5 77 6 1 3 1006 2293 -9.439 -0.278 -2.533 -11.357 -12.133 -11.794 0.000 0.000 0.000 0.000 IR 78 78 6 78 5 1 3 1005 2292 -8.802 -0.005 -12.313 -10.481 -11.587 0.000 0.000 0.000 0.000 [ MATP 20 ] 20 179 C G - - MP 79 78 6 83 6 2 4 1004 2291 -3.985 -9.834 -0.259 -3.317 -18.516 -18.911 -13.817 -7.990 -3.009 0.827 -5.964 -14.661 3.412 -13.335 -2.020 0.158 -14.188 -10.324 -0.035 -13.999 0.109 -5.451 ML 80 78 6 83 6 1 2 1120 2408 -3.107 -18.919 -13.634 -0.636 -18.769 -2.056 0.141 1.042 -3.131 -0.467 MR 81 78 6 83 6 1 3 1109 2396 -15.652 -14.381 -2.876 -14.359 -0.212 -12.573 1.787 -9.285 -0.872 -9.172 D 82 78 6 83 6 0 1 1090 2377 -19.442 -18.140 -13.937 -4.498 -14.636 -0.065 IL 83 83 5 83 6 1 3 1097 2384 -12.907 -0.632 -6.303 -1.549 -15.601 -15.261 0.000 0.000 0.000 0.000 IR 84 84 6 84 5 1 3 1067 2354 -1.036 -1.643 -2.380 -14.054 -15.160 0.000 0.000 0.000 0.000 [ MATP 21 ] 22 176 G A - - MP 85 84 6 89 4 2 4 858 2145 -5.834 -18.772 -0.026 -17.186 1.798 -6.507 -1.834 -3.967 -16.031 -4.191 -2.542 -15.465 3.363 -1.711 -5.145 -1.015 -2.646 -16.716 -1.309 -1.950 ML 86 84 6 89 4 1 2 1131 2419 -0.319 -3.379 -3.376 -7.457 -0.674 -0.878 1.491 -5.724 MR 87 84 6 89 4 1 2 1118 2405 -13.468 -0.418 -10.364 -1.996 -8.714 -10.484 1.998 -9.472 D 88 84 6 89 4 0 1 1087 2374 -1.366 -3.390 -3.391 -1.247 IL 89 89 5 89 4 1 4 1138 2425 -1.758 -0.506 -13.987 -17.724 0.000 0.000 0.000 0.000 IR 90 90 6 90 3 1 3 1137 2424 -0.021 -6.142 -14.411 0.000 0.000 0.000 0.000 [ MATL 22 ] 28 - A - - - ML 91 90 6 93 3 1 2 68 143 -20.044 -0.002 -9.556 1.959 -7.695 -3.707 -5.070 D 92 90 6 93 3 0 1 66 141 -17.040 -1.710 -0.526 IL 93 93 3 93 3 1 2 69 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 29 - G - - - ML 94 93 3 96 3 1 2 67 142 -20.063 -0.002 -9.625 -2.192 -4.254 1.828 -2.482 D 95 93 3 96 3 0 0 65 140 -16.572 -3.078 -0.182 IL 96 96 3 96 3 1 2 68 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 30 - U - - - ML 97 96 3 99 3 1 2 67 141 -2.248 -0.346 -8.580 -1.024 -0.471 -2.955 1.410 D 98 96 3 99 3 0 0 65 140 -16.452 -0.005 -8.178 IL 99 99 3 99 3 1 1 67 141 -1.189 -0.883 -5.705 0.000 0.000 0.000 0.000 [ MATL 25 ] 35 - G - - - ML 100 99 3 102 3 1 1 65 140 -20.096 -0.016 -6.515 -8.261 -6.598 1.983 -4.897 D 101 99 3 102 3 0 0 61 136 -14.828 -7.693 -0.007 IL 102 102 3 102 3 1 1 66 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 36 - G - - - ML 103 102 3 105 3 1 2 64 139 -20.080 -0.003 -8.707 -4.713 -8.181 1.984 -8.213 D 104 102 3 105 3 0 0 61 136 -15.914 -5.659 -0.029 IL 105 105 3 105 3 1 1 65 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 37 - U - - - ML 106 105 3 108 3 1 1 63 138 -20.077 -0.218 -2.837 -3.495 0.631 -2.517 1.130 D 107 105 3 108 3 0 0 61 135 -16.045 -0.596 -1.564 IL 108 108 3 108 3 1 1 64 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 38 - U - - - ML 109 108 3 111 3 1 2 63 137 -2.093 -0.385 -18.539 -2.000 0.208 -2.430 1.269 D 110 108 3 111 3 0 0 15 89 -18.737 -0.444 -1.916 IL 111 111 3 111 3 1 2 68 142 -0.357 -2.191 -17.376 0.000 0.000 0.000 0.000 [ MATL 29 ] 54 - G - - - ML 112 111 3 114 3 1 1 5 23 -20.054 -0.279 -2.508 -0.850 -2.186 1.136 0.039 D 113 111 3 114 3 0 0 6 24 -16.822 -0.001 -11.214 IL 114 114 3 114 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 55 - A - - - ML 115 114 3 117 2 1 1 1 1 * 0.000 1.956 -6.248 -3.470 -5.902 D 116 114 3 117 2 0 0 0 0 * 0.000 IL 117 117 3 117 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 118 117 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 119 65 1 120 3 0 0 1200 2677 -20.110 -0.362 -2.171 IL 120 120 2 120 3 1 1 1192 2669 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 184 - G - - - ML 121 120 2 123 5 1 1 1183 2660 -5.135 -0.043 -9.862 -18.708 -19.600 0.632 -3.298 1.220 -5.712 D 122 120 2 123 5 0 0 1239 2716 -1.478 -3.938 -2.707 -2.506 -2.021 IL 123 123 3 123 5 1 1 1258 2735 -0.106 -4.531 -18.056 -5.195 -19.162 0.000 0.000 0.000 0.000 [ MATP 34 ] 209 350 c g - - MP 124 123 3 128 6 2 2 1179 2656 -19.705 -5.770 -0.050 -11.084 -6.006 -19.096 -14.000 -5.364 -14.000 1.978 -4.347 -14.844 2.935 -5.691 -2.841 0.381 -14.372 0.649 -0.173 -14.182 -1.250 -7.455 ML 125 123 3 128 6 1 1 1173 2650 -16.005 -16.351 -0.036 -10.760 -16.201 -5.383 1.965 -11.015 -3.413 -10.474 MR 126 123 3 128 6 1 1 1293 2770 -17.712 -16.441 -12.349 -16.419 -0.000 -14.632 -13.159 -12.300 0.994 1.006 D 127 123 3 128 6 0 0 1171 2648 -19.803 -18.501 -14.298 -14.981 -14.998 -0.000 IL 128 128 5 128 6 1 1 1182 2659 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 1174 2651 -9.819 -0.002 -13.330 -11.498 -12.604 0.000 0.000 0.000 0.000 [ MATP 35 ] 210 348 C G - - MP 130 129 6 134 6 2 2 1172 2649 -19.741 -19.680 -0.223 -18.456 -2.802 -19.131 -14.038 -9.032 -6.793 1.312 -3.722 -14.882 3.418 -13.556 -13.896 -1.978 -14.409 -0.726 0.790 -14.221 -2.699 -9.278 ML 131 129 6 134 6 1 1 1167 2644 -9.633 -9.979 -4.693 -4.388 -9.829 -0.136 1.942 -4.532 -3.998 -4.250 MR 132 129 6 134 6 1 1 1292 2769 -17.932 -16.661 -12.569 -16.639 -0.220 -2.822 -11.359 -12.879 1.781 -0.827 D 133 129 6 134 6 0 0 1171 2648 -19.825 -18.523 -14.320 -15.002 -15.020 -0.000 IL 134 134 5 134 6 1 1 1125 2602 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 1142 2619 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 211 347 G C - - MP 136 135 6 140 6 2 2 1079 2556 -19.517 -5.395 -0.055 -6.200 -18.513 -18.908 -6.937 -6.552 -4.486 0.255 -11.693 -13.994 2.113 -10.834 -10.571 3.150 -14.014 -3.827 0.526 -10.065 -5.313 -12.284 ML 137 135 6 140 6 1 1 1089 2566 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 1301 2778 -19.065 -17.794 -13.703 -17.773 -0.000 -15.986 -12.944 -0.105 1.618 -13.025 D 139 135 6 140 6 0 0 1171 2648 -20.135 -18.833 -7.490 -6.367 -15.330 -0.026 IL 140 140 5 140 6 1 1 1139 2616 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 1205 2683 -10.005 -0.444 -13.517 -1.923 -12.790 0.000 0.000 0.000 0.000 [ MATP 37 ] 212 345 G C - - MP 142 141 6 146 6 2 2 1069 2546 -19.489 -19.428 -0.022 -10.676 -6.087 -18.880 -6.863 -10.009 -13.281 -3.753 -14.406 -9.259 1.085 -13.969 -13.718 3.517 -13.964 1.091 -3.378 -13.136 -3.061 -10.218 ML 143 141 6 146 6 1 1 1039 2516 -14.314 -14.660 -0.119 -3.662 -14.510 -12.039 -10.578 -9.362 -11.947 1.999 MR 144 141 6 146 6 1 1 1300 2777 -19.098 -17.827 -13.736 -17.805 -0.000 -16.019 1.779 -0.817 -14.248 -12.748 D 145 141 6 146 6 0 0 1172 2649 -20.109 -18.807 -14.605 -15.287 -2.284 -0.332 IL 146 146 5 146 6 1 1 1097 2574 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 1122 2599 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 213 344 u a - - MP 148 147 6 152 4 2 2 1044 2521 -5.571 -5.675 -0.084 -5.975 -13.784 -3.973 -5.939 1.592 -5.727 -14.628 2.053 -10.034 -13.642 -1.245 -14.155 -11.051 2.974 -10.371 -1.151 -7.768 ML 149 147 6 152 4 1 1 885 2362 -8.367 -8.550 -0.018 -7.279 0.314 -3.548 -4.081 1.385 MR 150 147 6 152 4 1 1 1299 2776 -17.286 -0.000 -14.183 -13.243 -0.814 0.514 0.943 -3.629 D 151 147 6 152 4 0 0 519 1996 -15.200 -14.881 -12.897 -0.000 IL 152 152 5 152 4 1 1 1299 2777 -1.001 -1.001 -10.447 -14.184 0.000 0.000 0.000 0.000 IR 153 153 6 153 3 1 1 1298 2775 -0.018 -7.085 -7.635 0.000 0.000 0.000 0.000 [ MATL 39 ] 216 - C - - - ML 154 153 6 156 3 1 1 12 30 -19.841 -0.000 -18.495 -17.096 1.306 -18.621 0.612 D 155 153 6 156 3 0 0 10 28 -18.975 -3.905 -0.100 IL 156 156 3 156 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 217 - U - - - ML 157 156 3 159 3 1 1 10 29 -19.860 -0.000 -18.514 -14.188 -5.288 -6.598 1.987 D 158 156 3 159 3 0 0 9 27 -18.875 -14.388 -0.000 IL 159 159 3 159 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 218 - c - - - ML 160 159 3 162 3 1 1 9 28 -19.860 -0.000 -18.514 -0.256 0.467 -0.107 -0.231 D 161 159 3 162 3 0 0 8 26 -18.875 -2.666 -0.247 IL 162 162 3 162 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 219 - g - - - ML 163 162 3 165 3 1 1 8 26 -19.903 -0.035 -5.384 -0.241 -0.228 0.412 -0.045 D 164 162 3 165 3 0 0 7 25 -18.628 -4.041 -0.090 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 220 - a - - - ML 166 165 3 168 3 1 1 6 25 -19.881 -0.000 -14.659 0.404 -0.280 -0.003 -0.225 D 167 165 3 168 3 0 0 6 24 -18.758 -14.271 -0.000 IL 168 168 3 168 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 221 - A - - - ML 169 168 3 171 3 1 1 5 23 -19.881 -0.013 -6.804 1.845 -14.911 -1.310 -7.544 D 170 168 3 171 3 0 0 5 23 -18.758 -11.907 -0.000 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 222 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.771 -3.182 -2.055 -2.078 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 47 ] - - - - - - S 176 63 1 177 3 1 7 125 250 -20.110 -0.000 -18.764 IL 177 177 2 177 3 1 8 126 251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 351 - U - - - ML 178 177 2 180 2 1 7 125 250 -1.033 -0.968 -1.620 -0.019 -2.057 1.291 D 179 177 2 180 2 0 6 123 248 -8.445 -0.004 IL 180 180 3 180 2 1 7 124 249 -4.073 -0.088 0.000 0.000 0.000 0.000 [ BIF 49 ] - - - - - - B 181 180 3 182 232 0 6 123 248 [ BEGL 50 ] - - - - - - S 182 181 1 183 4 0 0 105 230 -0.076 -5.960 -6.948 -5.207 [ MATP 51 ] 356 400 g c - - MP 183 182 1 187 6 2 3 105 230 -19.895 -19.834 -0.004 -18.611 -8.537 -19.285 -7.532 -3.251 -1.117 2.043 -14.807 -9.825 -1.493 -14.367 -11.527 2.641 1.657 0.313 -2.241 -5.769 -4.949 -4.196 ML 184 182 1 187 6 1 1 102 227 -14.889 -15.235 -0.985 -1.016 -15.085 -12.615 -9.455 1.994 -9.888 -6.128 MR 185 182 1 187 6 1 1 104 229 -14.441 -13.170 -0.006 -13.148 -8.282 -11.361 -0.820 -2.174 -4.017 1.656 D 186 182 1 187 6 0 0 90 215 -18.788 -17.486 -13.283 -1.528 -13.983 -0.615 IL 187 187 5 187 6 1 1 104 229 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 104 229 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 357 399 g c - - MP 189 188 6 193 6 2 4 103 228 -19.916 -19.855 -0.000 -18.631 -18.911 -19.306 -13.858 -3.797 -10.727 0.937 -10.685 -9.787 0.243 -9.629 -0.577 2.767 -9.743 -1.699 2.266 -11.520 -2.254 -5.681 ML 190 188 6 193 6 1 1 97 222 -14.999 -15.345 -10.060 -0.002 -15.195 -12.725 -10.144 1.446 -11.228 0.350 MR 191 188 6 193 6 1 1 102 227 -12.794 -11.523 -0.018 -11.501 -6.635 -9.714 1.993 -7.687 -6.977 -7.122 D 192 188 6 193 6 0 0 49 174 -18.173 -16.872 -12.669 -13.351 -13.368 -0.001 IL 193 193 5 193 6 1 1 102 227 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 102 227 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 358 398 g c - - MP 195 194 6 199 6 2 2 101 226 -19.919 -19.859 -0.014 -11.776 -14.327 -6.775 -13.886 -6.905 -13.705 2.385 -9.790 -7.355 0.878 -14.383 -14.139 2.476 -4.860 0.513 -1.834 -13.561 0.694 -12.668 ML 196 194 6 199 6 1 1 96 221 -14.999 -15.345 -0.885 -1.126 -15.195 -12.725 1.098 -9.185 0.892 -9.090 MR 197 194 6 199 6 1 1 95 220 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 44 169 -18.173 -16.872 -12.669 -13.351 -13.368 -0.001 IL 199 199 5 199 6 1 1 100 225 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 100 225 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 359 397 C G - - MP 201 200 6 205 6 2 2 99 224 -8.030 -4.452 -0.195 -8.156 -8.391 -3.826 -8.642 -5.921 -9.739 -4.458 -13.144 -8.494 3.030 -13.766 -7.568 2.427 -9.645 -1.961 -0.748 -10.441 0.609 -12.785 ML 202 200 6 205 6 1 1 52 177 -13.925 -14.271 -8.986 -0.041 -14.121 -5.284 0.489 -4.824 -3.876 1.318 MR 203 200 6 205 6 1 1 88 213 -7.964 -6.693 -2.602 -6.672 -1.805 -0.928 1.368 -1.366 -1.094 -0.828 D 204 200 6 205 6 0 0 36 161 -18.756 -17.454 -13.251 -13.934 -13.951 -0.000 IL 205 205 5 205 6 1 1 77 202 -8.677 -8.940 -0.009 -10.595 -11.371 -11.032 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 118 243 -0.213 -2.923 -8.652 -8.556 -16.998 0.000 0.000 0.000 0.000 [ MATP 55 ] 361 387 g c - - MP 207 206 6 211 6 2 2 28 51 -5.946 -11.935 -0.500 -8.926 -7.083 -1.905 -9.666 -6.364 -13.480 -0.575 -1.318 -8.744 1.516 -13.929 -7.491 2.298 -2.897 2.072 -0.731 -0.033 0.269 -8.169 ML 208 206 6 211 6 1 1 26 48 -14.492 -14.838 -1.290 -1.312 -9.372 -2.421 -6.385 0.147 -0.645 1.164 MR 209 206 6 211 6 1 1 24 47 -13.330 -12.059 -2.848 -5.858 -3.775 -0.376 -0.156 0.573 -2.855 0.563 D 210 206 6 211 6 0 0 22 45 -20.595 -19.294 -15.091 -10.657 -15.790 -0.001 IL 211 211 5 211 6 1 1 30 54 -1.137 -1.855 -1.902 -13.420 -14.196 -9.672 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 26 49 -8.814 -0.048 -12.325 -5.046 -11.599 0.000 0.000 0.000 0.000 [ MATP 56 ] 365 385 g c - - MP 213 212 6 217 4 2 2 25 48 -2.102 -4.014 -0.533 -6.139 -6.853 -8.990 -6.115 1.100 -5.537 -5.028 2.040 -11.201 -0.337 2.701 -13.937 -8.010 -0.330 -13.649 0.649 -7.601 ML 214 212 6 217 4 1 1 25 47 -1.884 -1.171 -1.817 -9.663 -2.629 1.251 -1.622 0.181 MR 215 212 6 217 4 1 1 23 45 -7.189 -6.368 -0.085 -4.704 1.922 -5.619 -4.129 -2.913 D 216 212 6 217 4 0 0 22 44 -10.864 -3.463 -0.200 -4.719 IL 217 217 5 217 4 1 1 25 47 -2.448 -0.302 -7.460 -16.823 0.000 0.000 0.000 0.000 IR 218 218 6 218 3 1 1 23 46 -2.009 -0.416 -9.090 0.000 0.000 0.000 0.000 [ MATL 57 ] 372 - g - - - ML 219 218 6 221 3 1 1 22 44 -20.077 -0.000 -18.731 -4.507 -0.746 0.919 0.555 D 220 218 6 221 3 0 0 17 40 -16.075 -4.870 -0.050 IL 221 221 3 221 3 1 1 23 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 373 - u - - - ML 222 221 3 224 3 1 1 21 43 -20.078 -0.000 -11.638 0.033 0.205 -3.476 0.794 D 223 221 3 224 3 0 0 17 39 -16.025 -4.511 -0.065 IL 224 224 3 224 3 1 1 22 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 374 - A - - - ML 225 224 3 227 3 1 1 20 42 -3.214 -0.189 -6.083 1.552 -1.307 -2.266 -1.135 D 226 224 3 227 3 0 0 16 39 -6.132 -11.495 -0.021 IL 227 227 3 227 3 1 1 21 44 -1.168 -1.182 -3.129 0.000 0.000 0.000 0.000 [ MATL 60 ] 381 - A - - - ML 228 227 3 230 2 1 1 1 1 * 0.000 1.473 -0.834 -1.484 -1.708 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 [ BEGR 62 ] - - - - - - S 232 181 1 233 3 0 2 46 90 -1.626 -0.599 -5.981 IL 233 233 2 233 3 1 3 46 91 -3.021 -0.206 -6.705 0.000 0.000 0.000 0.000 [ MATL 63 ] 403 - C - - - ML 234 233 2 236 5 1 5 45 90 -19.015 -0.000 -18.830 -19.042 -19.934 -2.635 1.851 -6.963 -2.155 D 235 233 2 236 5 0 1 44 89 -13.797 -9.641 -13.058 -0.003 -11.346 IL 236 236 3 236 5 1 1 45 90 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 404 432 G C - - MP 237 236 3 241 6 2 4 44 89 -19.943 -19.882 -0.000 -13.682 -15.031 -15.541 -13.907 -4.369 -11.579 0.692 -14.857 -14.321 -0.208 -14.416 -10.831 3.540 -11.759 0.277 -0.716 -13.580 -11.930 -6.033 ML 238 236 3 241 6 1 1 43 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 2 44 89 -15.693 -2.456 -9.406 -14.401 -0.293 -12.614 -10.022 1.472 0.290 -8.995 D 240 236 3 241 6 0 0 42 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 44 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 43 88 -7.738 -0.010 -11.250 -9.417 -10.523 0.000 0.000 0.000 0.000 [ MATP 65 ] 405 430 a u - - MP 243 242 6 247 6 2 4 42 87 -19.948 -19.887 -0.001 -18.663 -10.135 -19.338 -11.693 -9.977 -11.696 2.198 -6.810 -6.135 2.075 -11.503 -6.457 1.729 -14.460 -0.301 1.010 -14.179 -0.418 -1.878 ML 244 242 6 247 6 1 1 41 86 -7.730 -8.076 -2.790 -0.286 -7.926 -5.455 1.560 -1.801 -1.490 -1.293 MR 245 242 6 247 6 1 1 43 88 -15.405 -14.134 -0.683 -14.112 -1.408 -12.325 -10.210 1.999 -10.844 -8.922 D 246 242 6 247 6 0 0 41 86 -9.729 -8.427 -1.220 -4.906 -4.924 -0.999 IL 247 247 5 247 6 1 1 42 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 42 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 406 429 G C - - MP 249 248 6 253 6 2 3 40 85 -7.237 -7.278 -0.022 -18.677 -8.714 -19.351 -13.925 -10.573 -5.584 1.895 -14.874 -9.380 -3.682 -14.433 -8.964 3.518 -5.108 -1.530 -3.294 -13.597 -11.948 -2.045 ML 250 248 6 253 6 1 1 40 85 -7.730 -8.076 -2.790 -0.286 -7.926 -5.455 -0.969 -2.081 1.531 -1.465 MR 251 248 6 253 6 1 1 44 89 -14.197 -12.926 -8.835 -12.905 -0.201 -2.973 1.796 -7.689 -0.948 -7.576 D 252 248 6 253 6 0 0 42 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 39 84 -9.503 -9.766 -0.005 -11.421 -12.197 -11.857 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 40 85 -1.235 -0.800 -12.883 -11.051 -12.157 0.000 0.000 0.000 0.000 [ MATP 67 ] 408 426 G C - - MP 255 254 6 259 6 2 3 38 83 -19.957 -19.897 -0.002 -18.673 -9.618 -19.348 -17.697 -8.099 -19.365 0.236 -19.428 -15.749 -3.384 -19.070 -15.876 3.879 -16.092 -7.326 -14.152 -16.191 -16.225 -18.201 ML 256 254 6 259 6 1 1 39 84 -7.730 -8.076 -2.790 -0.286 -7.926 -5.455 -0.969 -2.081 1.531 -1.465 MR 257 254 6 259 6 1 1 43 88 -14.480 -13.209 -9.118 -13.188 -1.808 -0.489 -9.028 1.997 -9.577 -7.889 D 258 254 6 259 6 0 0 42 87 -13.884 -12.582 -8.379 -9.061 -9.078 -0.010 IL 259 259 5 259 6 1 1 39 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 39 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 68 ] 409 425 G C - - MP 261 260 6 265 4 2 2 36 81 -19.186 -8.176 -0.014 -7.296 -17.933 -14.510 -20.498 -12.005 -19.541 -15.659 -13.814 -19.845 -5.332 3.994 -16.069 -6.160 -14.185 -5.294 -16.275 -19.733 ML 262 260 6 265 4 1 1 38 82 -4.980 -5.162 -0.196 -3.892 -0.969 -2.081 1.531 -1.465 MR 263 260 6 265 4 1 1 42 87 -11.315 -10.344 -1.526 -0.618 -6.164 1.409 -7.237 0.405 D 264 260 6 265 4 0 0 42 87 -12.230 -11.911 -9.927 -0.002 IL 265 265 5 265 4 1 1 38 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 35 80 -6.650 -0.017 -9.350 0.000 0.000 0.000 0.000 [ MATL 69 ] 410 - U - - - ML 267 266 6 269 3 1 3 33 78 -20.087 -0.000 -18.741 -17.369 -7.251 -18.942 1.998 D 268 266 6 269 3 0 0 42 87 -15.519 -11.032 -0.001 IL 269 269 3 269 3 1 1 39 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 411 - U - - - ML 270 269 3 272 3 1 2 32 77 -20.087 -0.000 -18.741 -7.847 -8.033 -7.995 1.996 D 271 269 3 272 3 0 0 42 87 -15.519 -4.139 -0.084 IL 272 272 3 272 3 1 1 39 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 412 - C - - - ML 273 272 3 275 3 1 1 31 76 -7.923 -0.008 -9.325 -5.822 1.981 -6.299 -5.480 D 274 272 3 275 3 0 0 42 87 -15.435 -10.948 -0.001 IL 275 275 3 275 3 1 1 43 88 -6.892 -6.248 -0.031 0.000 0.000 0.000 0.000 [ MATL 72 ] 414 - G - - - ML 276 275 3 278 3 1 2 10 55 -20.080 -0.000 -18.735 -0.168 -6.284 1.625 -6.280 D 277 275 3 278 3 0 0 42 87 -0.271 -11.415 -2.548 IL 278 278 3 278 3 1 1 43 88 -0.592 -1.572 -13.182 0.000 0.000 0.000 0.000 [ MATL 73 ] 419 - A - - - ML 279 278 3 281 3 1 1 6 10 -8.324 -0.005 -11.946 1.984 -6.314 -5.653 -6.313 D 280 278 3 281 3 0 0 5 8 -13.357 -0.007 -7.749 IL 281 281 3 281 3 1 1 6 10 -6.517 -0.018 -9.217 0.000 0.000 0.000 0.000 [ MATL 74 ] 421 - A - - - ML 282 281 3 284 3 1 1 5 8 -7.441 -0.009 -11.365 1.843 -4.190 -3.248 -1.991 D 283 281 3 284 3 0 0 3 7 -9.697 -5.210 -0.041 IL 284 284 3 284 3 1 1 5 8 -7.385 -0.010 -10.085 0.000 0.000 0.000 0.000 [ MATL 75 ] 423 - U - - - ML 285 284 3 287 2 1 1 1 1 * 0.000 -7.018 -3.140 -7.665 1.954 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 76 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Ser ACC bact-Ser-r2-022416 LENG 90 MAXL 1304 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 19:39:59 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Ser-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Ser-r2-022416.sto NSEQ 17183 EFFN 9.565903 CKSUM 1476923651 STATS LOCAL MSV -8.8602 0.71888 STATS LOCAL VITERBI -10.3118 0.71888 STATS LOCAL FORWARD -3.1513 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.48114 1.35020 1.27181 1.45624 1.38629 1.38629 1.38629 1.38629 0.01791 4.72429 4.72429 1.46634 0.26236 0.00000 * 1 3.00086 3.84937 0.09769 3.81540 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01878 4.72429 4.63312 1.46634 0.26236 1.09861 0.40547 2 2.98290 3.99223 0.09330 3.91325 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02501 4.74375 4.13528 1.46634 0.26236 1.12993 0.39016 3 0.33492 2.70441 2.08194 2.37510 3 A - - ( 1.38629 1.38629 1.38629 1.38629 0.05296 4.44388 3.22306 1.13521 0.38766 1.36942 0.29337 4 1.94959 2.84203 0.31908 2.62361 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01817 4.71019 4.71019 1.46634 0.26236 2.01484 0.14311 5 0.85438 2.57078 0.88147 2.47927 6 a - - ( 1.38629 1.38629 1.38629 1.38629 0.01761 4.74125 4.74125 1.46634 0.26236 2.01484 0.14311 6 1.59423 2.38236 0.50954 2.26497 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05199 4.40208 3.25936 1.08256 0.41359 1.12697 0.39158 7 1.46756 2.47010 0.65191 1.80859 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04378 4.40392 3.48654 1.09732 0.40611 2.16387 0.12203 8 2.94339 3.06263 3.52933 0.13786 11 U - - , 1.38629 1.38629 1.38629 1.38629 0.03528 3.65688 4.72737 0.71740 0.66947 0.70332 0.68307 9 1.45316 2.67053 0.48690 2.49584 15 G - - , 1.38629 1.38629 1.38629 1.38629 0.08023 4.78623 2.67726 1.46634 0.26236 1.50056 0.25232 10 2.01402 1.11630 1.10537 1.57035 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.07850 4.18949 2.80770 0.92458 0.50534 1.07957 0.41512 11 2.20203 0.64406 1.95293 1.50323 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02801 4.21371 4.35628 0.95951 0.48302 0.67999 0.70648 12 1.80748 0.84428 1.85189 1.38980 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.09490 2.66864 3.85438 0.22939 1.58483 1.85235 0.17063 13 1.47322 1.72328 1.01113 1.47611 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.26664 1.49506 4.62405 0.29924 1.35241 0.96961 0.47679 14 0.07434 4.06365 3.43131 3.81144 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01800 4.78203 4.66063 1.46634 0.26236 1.14974 0.38085 15 2.33391 3.20750 0.23274 2.65543 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01777 4.79252 4.67504 1.46634 0.26236 1.50954 0.24976 16 1.80081 1.67154 2.57436 0.56093 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.20452 1.74551 4.56506 0.63245 0.75777 0.40634 1.09686 17 3.95351 4.72680 0.04536 4.11615 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03134 4.81719 3.78266 1.46634 0.26236 1.17988 0.36718 18 3.79356 4.99348 0.04081 4.53844 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01855 4.80244 4.58847 1.46634 0.26236 1.58508 0.22933 19 2.35484 1.06400 2.64906 0.71478 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.14055 4.80080 2.09642 1.46634 0.26236 0.74417 0.64460 20 2.00444 1.33100 2.47907 0.65926 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.23003 1.62795 4.69293 1.51711 0.24762 0.40502 1.09951 21 1.62899 2.27603 0.80046 1.37810 54 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03714 4.78736 3.57109 1.46634 0.26236 0.34233 1.23827 22 0.08684 3.86905 3.26354 3.72777 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.36412 1.37851 2.93293 4.21825 0.01483 0.50119 0.93093 23 0.92153 1.87227 1.43172 1.56342 176 a - - > 1.38629 1.38629 1.38629 1.38629 0.25532 3.03211 1.73092 0.63591 0.75386 2.04091 0.13916 24 1.66407 2.00589 0.68687 1.75477 179 G - - > 1.38629 1.38629 1.38629 1.38629 0.02291 4.38279 4.58963 1.22679 0.34705 3.24218 0.03986 25 1.67105 2.09687 0.54402 2.21920 181 G - - > 1.38629 1.38629 1.38629 1.38629 0.04022 4.25774 3.67820 1.10184 0.40386 3.33950 0.03610 26 1.78145 1.10299 1.07773 1.83658 183 g - - > 1.38629 1.38629 1.38629 1.38629 0.07324 4.57556 2.80807 1.46634 0.26236 0.49578 0.93929 27 1.02544 2.80222 0.67366 2.64718 184 G - - , 1.38629 1.38629 1.38629 1.38629 0.12016 2.26264 4.69480 2.52864 0.08313 1.08062 0.41458 28 1.52936 1.03192 1.56846 1.52033 209 c - - < 1.38629 1.38629 1.38629 1.38629 0.06715 4.73899 2.87888 1.46634 0.26236 2.53087 0.08294 29 1.85948 0.73707 2.00080 1.46749 210 c - - < 1.38629 1.38629 1.38629 1.38629 0.14292 4.69038 2.08756 1.46634 0.26236 2.88975 0.05719 30 1.89417 1.52171 0.74611 1.85142 211 g - - < 1.38629 1.38629 1.38629 1.38629 0.02594 4.56843 4.18415 1.46634 0.26236 3.30073 0.03755 31 2.02427 2.08709 0.42708 2.39198 212 G - - < 1.38629 1.38629 1.38629 1.38629 0.03252 4.56485 3.83559 1.46634 0.26236 3.42867 0.03297 32 1.74539 1.21775 1.99915 0.93120 213 u - - < 1.38629 1.38629 1.38629 1.38629 0.05064 3.62441 3.78462 0.97701 0.47230 0.84416 0.56197 33 2.91920 0.58649 3.59103 1.01562 216 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01895 4.66847 4.66847 1.46634 0.26236 2.24401 0.11209 34 3.43670 3.21001 3.86258 0.09821 217 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01875 4.67928 4.67928 1.46634 0.26236 2.95443 0.05352 35 1.37554 1.28669 1.56891 1.33621 218 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01875 4.67928 4.67928 1.46634 0.26236 1.68745 0.20455 36 1.36457 1.59536 1.31707 1.29552 219 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03802 4.70268 3.56718 1.46634 0.26236 2.20857 0.11637 37 1.14439 1.61366 1.51024 1.34107 220 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01856 4.69096 4.68783 1.46634 0.26236 2.88621 0.05740 38 0.17027 3.76486 2.24973 3.57671 221 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01853 4.69093 4.69093 1.46634 0.26236 0.58913 0.80925 39 0.28776 2.70846 2.47071 2.31368 222 A - - _ 1.38629 1.38629 1.38629 1.38629 0.29508 1.45983 3.76143 4.36496 0.01280 1.05968 0.42552 40 1.09169 2.05881 1.07991 1.62393 344 g - - > 1.38629 1.38629 1.38629 1.38629 0.03817 4.77300 3.54076 1.46634 0.26236 2.10954 0.12930 41 2.10893 0.63526 1.99127 1.54969 345 C - - > 1.38629 1.38629 1.38629 1.38629 0.03341 3.73399 4.71456 0.61198 0.78149 1.69827 0.20212 42 2.00742 0.88178 1.30677 1.70966 347 c - - > 1.38629 1.38629 1.38629 1.38629 0.01726 4.76099 4.76099 1.46634 0.26236 1.46354 0.26320 43 1.65031 2.30445 0.66261 1.64666 348 G - - > 1.38629 1.38629 1.38629 1.38629 0.06124 3.83455 3.27570 0.65674 0.73093 2.12552 0.12712 44 1.72330 1.90806 0.91634 1.29764 350 g - - > 1.38629 1.38629 1.38629 1.38629 0.01758 4.74279 4.74279 1.46634 0.26236 0.18019 1.80251 45 1.92097 1.44743 2.37291 0.64407 351 U - - , 1.38629 1.38629 1.38629 1.38629 0.50753 0.95262 4.39880 0.10234 2.33018 1.09861 0.40547 46 1.39780 2.38082 0.59101 2.23849 356 G - - < 1.38629 1.38629 1.38629 1.38629 0.03186 4.81511 3.76134 1.46634 0.26236 0.97363 0.47435 47 1.76467 1.88092 0.89157 1.32314 357 g - - < 1.38629 1.38629 1.38629 1.38629 0.01655 4.80257 4.80257 1.46634 0.26236 1.39020 0.28638 48 1.35112 1.98489 0.79207 1.89215 358 g - - < 1.38629 1.38629 1.38629 1.38629 0.02406 4.80470 4.16158 1.46634 0.26236 1.56871 0.23359 49 2.45605 0.90725 1.23988 1.50881 359 c - - < 1.38629 1.38629 1.38629 1.38629 0.08357 4.47792 2.67626 1.11470 0.39752 1.74097 0.19280 50 1.82872 1.49386 1.00767 1.38706 361 g - - < 1.38629 1.38629 1.38629 1.38629 0.28908 3.83184 1.47240 0.94079 0.49482 2.49867 0.08577 51 1.71185 1.38836 1.09717 1.44320 365 g - - < 1.38629 1.38629 1.38629 1.38629 0.23344 1.68055 3.82006 0.29329 1.36966 0.09148 2.43705 52 2.07098 1.81485 0.97708 1.09462 372 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01658 4.80080 4.80080 1.46634 0.26236 1.63108 0.21781 53 1.33754 1.32905 2.46088 0.94825 373 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01658 4.80107 4.80107 1.46634 0.26236 1.56376 0.23490 54 0.46946 2.08988 2.40155 1.83022 374 A - - _ 1.38629 1.38629 1.38629 1.38629 0.11051 2.46312 3.93952 0.68456 0.70181 1.63821 0.21608 55 0.53402 1.90693 2.14430 1.91006 381 A - - _ 1.38629 1.38629 1.38629 1.38629 0.57583 1.68004 1.38073 0.29371 1.36841 1.05055 0.43039 56 1.68586 1.23069 1.16206 1.56168 385 g - - > 1.38629 1.38629 1.38629 1.38629 0.04416 3.95524 3.72773 0.90026 0.52166 0.40994 1.08972 57 1.74352 1.30637 1.27588 1.29059 387 g - - > 1.38629 1.38629 1.38629 1.38629 0.05840 3.03904 4.72792 1.95387 0.15283 0.51155 0.91520 58 1.93534 1.33217 0.74021 2.16536 397 g - - > 1.38629 1.38629 1.38629 1.38629 0.02488 4.79039 4.11876 1.46634 0.26236 1.22198 0.34906 59 2.45132 0.95513 1.61079 1.11070 398 c - - > 1.38629 1.38629 1.38629 1.38629 0.01676 4.79013 4.79013 1.46634 0.26236 1.88209 0.16520 60 1.38861 1.01643 1.70590 1.57462 399 c - - > 1.38629 1.38629 1.38629 1.38629 0.01680 4.79013 4.78530 1.46634 0.26236 0.72963 0.65795 61 2.49741 0.87938 1.60224 1.19992 400 c - - > 1.38629 1.38629 1.38629 1.38629 0.33481 1.31619 4.11223 0.12847 2.11562 0.89596 0.52461 62 2.87775 0.18425 3.90773 2.38681 403 C - - , 1.38629 1.38629 1.38629 1.38629 0.01949 4.80624 4.49850 1.46634 0.26236 1.52879 0.24437 63 1.81139 2.48128 0.40541 2.45066 404 G - - < 1.38629 1.38629 1.38629 1.38629 0.01658 4.80329 4.79857 1.46634 0.26236 1.29526 0.31997 64 1.46372 1.33516 1.34982 1.40152 405 c - - < 1.38629 1.38629 1.38629 1.38629 0.01723 4.80621 4.72097 1.46634 0.26236 0.83213 0.57114 65 1.50227 2.81097 0.44625 2.56129 406 G - - < 1.38629 1.38629 1.38629 1.38629 0.02392 4.30022 4.59786 0.94524 0.49198 1.30737 0.31544 66 2.53140 4.03702 0.12002 4.14116 408 G - - < 1.38629 1.38629 1.38629 1.38629 0.01746 4.81175 4.69099 1.46634 0.26236 1.37050 0.29300 67 3.69605 4.69831 0.04527 4.57261 409 G - - < 1.38629 1.38629 1.38629 1.38629 0.02174 4.81070 4.31534 1.46634 0.26236 1.28183 0.32508 68 4.20477 3.89912 4.75050 0.04482 410 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01649 4.80652 4.80652 1.46634 0.26236 1.52136 0.24643 69 3.73193 3.58660 4.23008 0.06848 411 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01649 4.80652 4.80652 1.46634 0.26236 1.43611 0.27161 70 3.99229 0.06170 4.34883 3.55933 412 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01778 4.80725 4.66199 1.46634 0.26236 0.58967 0.80858 71 1.53009 3.53610 0.33542 3.23602 414 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03205 3.82164 4.64030 0.98762 0.46595 1.14941 0.38100 72 0.04705 4.34066 4.00551 4.21885 419 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01914 4.54138 4.79131 1.15743 0.37731 0.90846 0.51608 73 0.20224 3.05177 2.94326 2.48736 421 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02142 4.35775 4.78147 0.98804 0.46570 1.10708 0.40126 74 3.37011 2.90500 3.86941 0.11654 423 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.51995 4.28597 1.13429 0.38809 1.05775 0.42654 75 4.60057 0.05746 4.55826 3.34349 425 C - - > 1.38629 1.38629 1.38629 1.38629 0.01637 4.81364 4.81364 1.46634 0.26236 0.83471 0.56916 76 4.26727 0.13687 3.89695 2.36879 426 C - - > 1.38629 1.38629 1.38629 1.38629 0.02166 4.31646 4.81856 1.09352 0.40802 1.04498 0.43340 77 2.89258 0.51786 2.60120 1.29247 429 C - - > 1.38629 1.38629 1.38629 1.38629 0.01629 4.81928 4.81734 1.46634 0.26236 1.10106 0.40424 78 1.67921 1.52542 1.16605 1.25754 430 g - - > 1.38629 1.38629 1.38629 1.38629 0.01924 4.51153 4.81927 1.12577 0.39216 1.09245 0.40856 79 2.65088 0.51194 2.33395 1.45599 432 C - - > 1.38629 1.38629 1.38629 1.38629 0.01767 4.81910 4.66260 1.46634 0.26236 1.09861 0.40547 80 1.93849 0.76666 2.28104 1.24016 433 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02030 4.81773 4.42231 1.46634 0.26236 1.15355 0.37909 81 2.49195 0.58862 2.18376 1.38814 434 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01925 4.52522 4.79903 1.14429 0.38339 1.18390 0.36540 82 2.65061 1.02022 2.37828 0.74199 436 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01636 4.81438 4.81438 1.46634 0.26236 1.11812 0.39585 83 2.80023 0.36306 2.67340 1.74501 437 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01686 4.81568 4.75405 1.46634 0.26236 1.22083 0.34953 84 2.50429 2.28388 2.57421 0.30088 438 U - - ) 1.38629 1.38629 1.38629 1.38629 0.01634 4.81517 4.81517 1.46634 0.26236 0.93330 0.49965 85 3.69020 0.12027 3.68705 2.75972 439 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01630 4.81807 4.81807 1.46634 0.26236 1.03877 0.43679 86 3.57710 0.15281 3.41732 2.51390 440 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02176 4.30902 4.81884 0.94819 0.49011 1.09861 0.40547 87 2.24073 3.35607 0.26016 2.43247 442 G - - : 1.38629 1.38629 1.38629 1.38629 0.02725 4.30948 4.30948 1.46634 0.26236 1.09861 0.40547 88 3.91833 0.07133 4.43055 3.29518 443 C - - : 1.38629 1.38629 1.38629 1.38629 0.02725 4.30948 4.30948 1.46634 0.26236 1.09861 0.40547 89 3.91833 0.07133 4.43055 3.29518 444 C - - : 1.38629 1.38629 1.38629 1.38629 0.02725 4.30948 4.30948 1.46634 0.26236 1.09861 0.40547 90 0.05854 4.16300 3.81129 3.95372 445 A - - : 1.38629 1.38629 1.38629 1.38629 0.01372 4.29595 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Thr ACC bact-Thr-r2-022416 STATES 242 NODES 65 CLEN 76 W 1213 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 21:04:27 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Thr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Thr-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Thr-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Thr-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13370 EFFN 13370.000000 CKSUM 93420263 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.9762 0.71898 ECMLC 0.63242 -8.09556 1.88973 1600000 663298 0.001809 ECMGC 0.36555 -23.12388 -10.85453 1600000 35472 0.011276 ECMLI 0.58406 -8.42448 2.27194 1600000 619953 0.001936 ECMGI 0.38228 -20.87539 -9.35105 1600000 32762 0.012209 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1213 2618 -18.633 -19.878 -0.850 -1.167 IL 1 1 2 1 4 13 33 1217 2622 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 34 1218 2623 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 245 - A - - MR 3 2 3 5 3 15 34 1217 2621 -19.191 -0.000 -17.508 2.000 -14.816 -14.090 -14.147 D 4 2 3 5 3 11 29 1213 2618 -19.968 -15.146 -0.000 IR 5 5 3 5 3 13 33 1217 2622 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 244 - C - - MR 6 5 3 8 3 14 33 1216 2620 -19.191 -0.000 -17.508 -15.959 2.000 -17.221 -14.017 D 7 5 3 8 3 11 29 1213 2618 -19.968 -15.146 -0.000 IR 8 8 3 8 3 13 32 1216 2621 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 243 - C - - MR 9 8 3 11 3 13 32 1215 2619 -19.191 -0.000 -17.508 -15.959 2.000 -17.221 -14.017 D 10 8 3 11 3 11 29 1213 2618 -19.968 -0.011 -7.101 IR 11 11 3 11 3 11 27 1214 2619 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 242 - A - - MR 12 11 3 14 5 12 31 1214 2618 -5.341 -0.087 -18.492 -4.891 -19.595 1.248 -1.695 -3.229 0.274 D 13 11 3 14 5 8 22 1197 2602 -11.012 -6.367 -8.638 -10.069 -0.023 IR 14 14 3 14 5 10 25 1207 2612 -0.602 -2.722 -15.206 -13.374 -2.401 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 237 G C - - MP 15 14 3 19 6 16 33 1213 2618 -19.534 -19.473 -0.000 -18.250 -18.530 -18.925 -17.484 -14.092 -19.870 -11.577 -19.023 -15.247 -2.889 -19.274 -6.747 3.976 -15.651 -4.358 -3.774 -15.717 -15.805 -19.011 ML 16 14 3 19 6 10 27 1210 2615 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 10 26 1207 2612 -16.125 -14.854 -1.058 -14.832 -1.342 -2.999 -11.135 1.999 -11.851 -9.723 D 18 14 3 19 6 8 22 1197 2602 -17.750 -16.448 -12.245 -12.927 -12.945 -0.001 IL 19 19 5 19 6 11 28 1211 2616 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 11 28 1211 2616 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 236 C G - - MP 21 20 6 25 6 14 31 1211 2616 -19.559 -5.619 -0.064 -11.521 -5.459 -18.949 -15.975 -4.179 -15.542 -11.990 -6.482 -9.612 3.595 -14.882 -15.564 0.674 -1.524 -2.224 0.283 -15.946 -1.066 -14.336 ML 22 20 6 25 6 11 27 1209 2613 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 13 27 1203 2608 -14.786 -13.515 -2.713 -13.493 -0.240 -11.706 -0.758 -9.240 1.767 -8.486 D 24 20 6 25 6 8 22 1197 2602 -18.069 -16.768 -12.565 -13.247 -13.264 -0.001 IL 25 25 5 25 6 11 28 1210 2615 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 13 30 1210 2615 -9.823 -0.002 -13.334 -11.502 -12.608 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 234 C G - - MP 27 26 6 31 6 12 29 1209 2614 -19.528 -19.467 -0.045 -18.244 -18.523 -5.030 -13.949 -13.657 -1.668 -1.602 -7.347 -14.757 3.402 -13.447 -13.799 -1.179 -14.303 -11.230 1.882 -4.441 -0.741 -7.401 ML 28 26 6 31 6 11 28 1208 2613 -9.113 -9.459 -0.123 -3.868 -9.309 -6.839 -1.378 0.532 -2.214 0.967 MR 29 26 6 31 6 13 26 1201 2606 -16.108 -14.837 -0.640 -14.815 -1.481 -13.028 -1.983 -7.528 0.194 1.377 D 30 26 6 31 6 8 22 1197 2602 -18.069 -16.768 -12.565 -13.247 -13.264 -0.001 IL 31 31 5 31 6 11 27 1207 2612 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 11 27 1207 2611 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 233 G C - - MP 33 32 6 37 6 15 28 1207 2612 -3.979 -19.456 -0.096 -18.233 -10.341 -18.907 -13.480 -1.446 -13.299 1.150 -9.381 -3.470 0.689 -10.662 -13.737 3.297 -13.983 0.142 -1.673 -5.938 -1.245 -5.571 ML 34 32 6 37 6 10 24 1200 2605 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 11 24 1184 2588 -14.629 -13.358 -3.752 -13.337 -0.112 -11.550 -9.217 1.998 -9.778 -8.055 D 36 32 6 37 6 8 22 1197 2602 -19.313 -18.011 -0.354 -14.490 -14.507 -2.201 IL 37 37 5 37 6 14 27 1206 2611 -12.306 -12.569 -0.001 -14.224 -15.000 -14.661 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 10 25 1204 2608 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 232 g c - - MP 39 38 6 43 6 14 26 1205 2610 -19.576 -19.515 -0.001 -18.292 -11.300 -18.967 -13.542 -7.840 -6.827 2.331 -14.459 -13.958 1.234 -14.041 -13.796 2.617 -7.317 0.199 -0.719 -13.217 -0.559 -5.374 ML 40 38 6 43 6 9 23 1198 2603 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 10 23 1180 2585 -14.612 -13.341 -9.249 -13.319 -0.003 -11.533 -6.461 1.406 0.081 -1.833 D 42 38 6 43 6 7 20 1156 2561 -17.112 -15.811 -1.664 -2.138 -12.307 -1.129 IL 43 43 5 43 6 10 24 1200 2605 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 10 24 1200 2605 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 231 u a - - MP 45 44 6 49 6 12 24 1203 2608 -4.100 -19.520 -0.094 -18.296 -7.636 -18.971 -2.991 -6.673 -5.700 -0.102 -3.446 -9.491 2.401 -0.222 -11.469 -0.815 -9.828 -6.852 2.461 -4.899 1.042 -0.992 ML 46 44 6 49 6 11 23 1202 2607 -11.855 -12.201 -0.018 -6.610 -12.051 -9.580 -5.852 -7.590 1.988 -6.607 MR 47 44 6 49 6 9 22 1179 2584 -14.658 -13.387 -1.816 -13.365 -0.483 -11.579 0.281 -8.356 1.474 -8.044 D 48 44 6 49 6 7 19 781 2186 -15.985 -14.684 -10.481 -11.163 -11.180 -0.002 IL 49 49 5 49 6 11 24 1204 2609 -0.656 -13.965 -1.454 -15.620 -16.397 -16.057 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 10 23 1198 2602 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 13 230 g c - - MP 51 50 6 55 4 10 22 1201 2606 -7.528 -19.019 -0.037 -5.675 -13.547 -3.754 -13.366 1.683 -14.487 -13.962 -1.741 -14.053 -13.803 2.661 -5.443 0.152 2.125 -13.220 -0.786 -6.206 ML 52 50 6 55 4 9 21 1188 2593 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 8 21 1167 2572 -12.850 -11.879 -0.656 -1.454 0.296 1.255 -6.859 -1.405 D 54 50 6 55 4 7 19 749 2153 -11.408 -11.089 -9.105 -0.004 IL 55 55 5 55 4 9 21 1202 2607 -8.167 -8.851 -0.009 -11.336 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 9 21 1195 2600 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 15 - U - - - ML 57 56 6 59 3 8 20 1201 2606 -1.675 -0.542 -18.359 -6.950 -4.196 -6.107 1.972 D 58 56 6 59 3 7 19 439 1844 -16.066 -0.001 -10.458 IL 59 59 3 59 3 10 25 1288 2693 -0.019 -6.344 -10.454 0.000 0.000 0.000 0.000 [ MATL 13 ] 105 - A - - - ML 60 59 3 62 2 7 19 205 388 -20.380 -0.000 1.733 -3.724 -0.797 -5.310 D 61 59 3 62 2 6 18 204 387 -13.521 -0.000 IL 62 62 3 62 2 7 19 205 389 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 6 18 204 387 [ BEGR 46 ] - - - - - - S 64 63 1 65 3 0 1 160 341 -19.748 -0.000 -18.402 IL 65 65 2 65 3 1 1 162 343 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 184 - A - - - ML 66 65 2 68 3 1 1 160 341 -19.748 -0.264 -2.578 1.551 -2.018 -1.544 -1.058 D 67 65 2 68 3 0 0 164 345 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 160 340 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 185 - G - - - ML 69 68 3 71 3 1 2 156 337 -3.305 -0.154 -18.138 -4.204 -3.477 1.879 -2.499 D 70 68 3 71 3 0 0 167 347 -1.633 -0.739 -3.673 IL 71 71 3 71 3 1 1 178 358 -0.147 -3.494 -6.924 0.000 0.000 0.000 0.000 [ MATL 49 ] 207 - G - - - ML 72 71 3 74 3 1 1 26 44 -19.712 -0.050 -4.877 -1.386 -4.406 1.723 -1.897 D 73 71 3 74 3 0 0 25 43 -15.837 -11.350 -0.001 IL 74 74 3 74 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 208 - U - - - ML 75 74 3 77 3 1 1 25 43 -19.662 -0.064 -4.534 -0.982 -2.168 -4.242 1.686 D 76 74 3 77 3 0 0 24 42 -17.061 -0.268 -2.562 IL 77 77 3 77 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 209 - C - - - ML 78 77 3 80 5 1 1 24 42 -18.606 -0.000 -18.422 -15.521 -11.834 -1.294 1.528 -4.013 -0.631 D 79 77 3 80 5 0 0 21 39 -14.816 -10.660 -14.077 -0.099 -3.928 IL 80 80 3 80 5 1 1 27 42 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 210 229 g c - - MP 81 80 3 85 6 2 2 23 41 -19.534 -7.430 -0.008 -18.250 -18.529 -18.924 -11.328 -1.286 -13.316 1.835 -11.465 -5.087 0.709 -12.844 -13.754 2.656 -11.489 1.868 -2.013 -11.186 -6.761 -2.763 ML 82 80 3 85 6 1 1 23 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 20 39 -16.615 -15.344 -2.828 -15.322 -0.219 -13.535 -12.599 -11.237 -14.150 2.000 D 84 80 3 85 6 0 0 20 39 -15.518 -14.216 -10.013 -0.176 -10.712 -3.141 IL 85 85 5 85 6 1 1 25 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 22 40 -8.009 -0.009 -11.520 -9.688 -10.794 0.000 0.000 0.000 0.000 [ MATP 53 ] 211 227 c g - - MP 87 86 6 91 6 2 2 20 39 -19.544 -6.550 -0.015 -18.260 -18.539 -18.934 -13.827 -7.389 -13.826 0.826 -3.950 -11.717 2.817 -9.440 -13.692 1.440 -11.531 0.763 1.213 -8.664 -1.743 -3.665 ML 88 86 6 91 6 1 1 20 39 -12.216 -12.562 -7.276 -0.012 -12.412 -9.941 -6.176 -7.930 1.991 -6.935 MR 89 86 6 91 6 1 1 19 37 -16.396 -15.125 -11.034 -15.103 -0.001 -13.317 -12.366 -11.013 -13.905 2.000 D 90 86 6 91 6 0 0 19 37 -12.405 -11.103 -6.900 -7.582 -7.600 -0.028 IL 91 91 5 91 6 1 1 23 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 20 39 -8.886 -6.973 -0.016 -10.565 -11.670 0.000 0.000 0.000 0.000 [ MATP 54 ] 212 225 c g - - MP 93 92 6 97 6 2 2 18 37 -19.528 -8.268 -0.005 -18.244 -18.524 -18.919 -13.516 -4.052 -13.345 1.568 -14.195 -13.953 2.381 -12.288 -13.744 2.307 -5.901 0.724 -0.736 -13.216 -3.733 -1.072 ML 94 92 6 97 6 1 1 19 38 -14.268 -0.873 -1.147 -9.023 -14.464 -11.993 1.210 -8.430 0.749 -8.338 MR 95 92 6 97 6 1 1 18 36 -16.396 -15.125 -11.034 -15.103 -10.237 -0.002 -12.366 -11.013 -13.905 2.000 D 96 92 6 97 6 0 0 19 37 -12.405 -11.103 -6.900 -7.582 -7.600 -0.028 IL 97 97 5 97 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 18 37 -8.914 -0.005 -12.425 -10.593 -11.699 0.000 0.000 0.000 0.000 [ MATP 55 ] 213 223 G C - - MP 99 98 6 103 6 2 2 16 35 -19.549 -19.488 -0.000 -18.264 -18.544 -18.939 -13.535 -0.338 -13.355 2.244 -14.484 -6.681 -1.426 -14.044 -13.786 3.298 -14.032 -7.459 -2.073 -11.071 -6.695 -12.320 ML 100 98 6 103 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 15 34 -19.022 -17.720 -13.517 -14.199 -14.217 -0.000 IL 103 103 5 103 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 214 222 G C - - MP 105 104 6 109 4 2 2 14 33 -18.779 -18.986 -0.000 -17.400 -17.495 -14.104 -19.890 -4.108 -19.119 -15.263 -13.408 -19.315 -4.008 3.972 -15.665 -6.828 -13.774 -2.451 -15.861 -19.020 ML 106 104 6 109 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 15 34 -14.444 -14.125 -12.141 -0.000 IL 109 109 5 109 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 215 - U - - - ML 111 110 6 113 3 1 1 12 30 -19.688 -0.000 -18.342 -5.559 -6.774 -14.795 1.989 D 112 110 6 113 3 0 0 12 30 -16.557 -12.070 -0.000 IL 113 113 3 113 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 216 - U - - - ML 114 113 3 116 3 1 1 11 29 -19.688 -0.000 -18.342 -13.759 -4.631 -6.647 1.982 D 115 113 3 116 3 0 0 11 29 -16.557 -12.070 -0.000 IL 116 116 3 116 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 217 - C - - - ML 117 116 3 119 3 1 1 9 28 -19.688 -0.000 -18.342 -5.187 1.975 -5.605 -5.610 D 118 116 3 119 3 0 0 9 28 -16.557 -12.070 -0.000 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 218 - G - - - ML 120 119 3 122 3 1 1 8 26 -19.688 -0.000 -18.342 0.555 -6.443 1.321 -5.551 D 121 119 3 122 3 0 0 8 27 -16.557 -12.070 -0.000 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 219 - A - - - ML 123 122 3 125 3 1 1 7 25 -19.688 -0.000 -18.342 1.979 -6.447 -5.370 -5.559 D 124 122 3 125 3 0 0 7 26 -16.557 -12.070 -0.000 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 220 - u - - - ML 126 125 3 128 3 1 1 5 23 -19.688 -0.000 -18.342 -0.393 -0.605 0.041 0.634 D 127 125 3 128 3 0 0 6 25 -16.557 -12.070 -0.000 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 221 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -5.097 -1.690 -6.925 1.869 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 1 9 166 343 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 185 1 9 166 343 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 2 42 74 -0.101 -15.597 -3.884 -17.787 [ MATP 18 ] 106 136 G C - - MP 136 135 1 140 6 2 2 42 74 -19.508 -19.447 -0.022 -18.224 -6.797 -7.402 -17.311 -5.945 -19.136 -3.674 -18.912 -15.236 -1.103 -18.871 -15.419 3.889 -15.617 -1.661 -1.745 -6.809 -15.699 -18.122 ML 137 135 1 140 6 1 1 40 73 -6.629 -6.975 -0.886 -1.384 -6.825 -4.355 0.100 -0.778 0.585 -0.243 MR 138 135 1 140 6 1 2 40 73 -17.136 -15.865 -1.244 -15.844 -0.791 -14.057 -2.108 -7.087 -1.711 1.789 D 139 135 1 140 6 0 0 37 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 41 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 41 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 107 135 C G - - MP 142 141 6 146 6 2 3 40 72 -5.837 -19.470 -0.029 -18.246 -8.829 -18.921 -15.105 -14.929 -14.905 -2.176 -7.415 -15.468 3.782 -7.997 -14.842 -1.041 -15.223 -12.614 -0.664 -2.819 -1.093 -1.830 ML 143 141 6 146 6 1 1 38 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 1 39 71 -16.626 -15.355 -11.263 -15.333 -0.001 -13.546 0.998 0.181 -1.477 -0.974 D 145 141 6 146 6 0 0 33 66 -16.139 -14.837 -10.634 -11.316 -11.334 -0.002 IL 146 146 5 146 6 1 2 42 75 -1.002 -1.002 -9.644 -13.381 -14.158 -13.818 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 38 71 -9.579 -0.003 -13.090 -11.258 -12.364 0.000 0.000 0.000 0.000 [ MATP 20 ] 110 133 U A - - MP 148 147 6 152 6 2 3 37 70 -6.602 -7.836 -0.034 -6.816 -18.523 -18.918 -14.159 -6.733 -14.120 -1.255 -8.702 -7.577 -0.468 -13.620 -6.784 0.261 -14.481 -11.468 3.710 -1.320 -7.915 -2.815 ML 149 147 6 152 6 1 1 36 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 1 38 70 -16.687 -0.834 -3.132 -15.394 -3.100 -2.264 1.670 -10.332 -11.305 -0.293 D 151 147 6 152 6 0 0 33 66 -16.139 -14.837 -10.634 -11.316 -11.334 -0.002 IL 152 152 5 152 6 1 1 36 69 -9.703 -9.965 -0.004 -11.621 -12.397 -12.057 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 2 38 70 -1.268 -0.774 -14.807 -12.975 -14.081 0.000 0.000 0.000 0.000 [ MATP 21 ] 112 130 C G - - MP 154 153 6 158 4 2 3 35 68 -7.042 -19.002 -0.011 -17.416 -3.427 -13.629 -2.064 -0.659 -6.487 -14.751 3.559 -8.193 -1.855 -4.017 -14.288 -11.199 0.987 -14.104 -2.485 -0.449 ML 155 153 6 158 4 1 1 34 67 -10.681 -10.863 -0.004 -9.593 -9.605 -8.524 -10.840 1.998 MR 156 153 6 158 4 1 1 29 62 -11.618 -10.647 -8.515 -0.005 -6.327 -6.074 -5.756 1.983 D 157 153 6 158 4 0 0 33 66 -13.078 -12.759 -0.199 -2.958 IL 158 158 5 158 4 1 1 34 67 -8.632 -9.315 -0.006 -11.801 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 1 35 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 114 - A - - - ML 160 159 6 162 3 1 2 33 66 -19.737 -0.000 -18.391 1.924 -3.009 -6.035 -3.913 D 161 159 6 162 3 0 0 28 61 -14.166 -3.598 -0.124 IL 162 162 3 162 3 1 1 34 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 115 - G - - - ML 163 162 3 165 3 1 1 32 65 -19.738 -0.059 -4.631 0.186 -4.031 1.468 -4.864 D 164 162 3 165 3 0 0 22 54 -14.043 -8.101 -0.005 IL 165 165 3 165 3 1 1 33 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 116 - U - - - ML 166 165 3 168 3 1 1 32 64 -19.678 -0.610 -1.536 -2.675 -0.121 -2.243 1.440 D 167 165 3 168 3 0 0 20 49 -16.762 -12.275 -0.000 IL 168 168 3 168 3 1 1 33 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 117 - U - - - ML 169 168 3 171 3 1 1 31 64 -2.706 -0.240 -17.722 -0.596 -0.700 -3.160 1.385 D 170 168 3 171 3 0 0 20 42 -19.755 -0.163 -3.226 IL 171 171 3 171 3 1 1 34 66 -0.817 -1.210 -14.966 0.000 0.000 0.000 0.000 [ MATL 26 ] 122 - G - - - ML 172 171 3 174 3 1 1 20 40 -19.689 -0.000 -18.343 -5.779 -15.967 1.963 -3.584 D 173 171 3 174 3 0 0 19 39 -16.529 -0.856 -1.160 IL 174 174 3 174 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 123 - G - - - ML 175 174 3 177 3 1 1 19 39 -19.722 -0.000 -18.376 -5.968 -16.016 1.991 -6.671 D 176 174 3 177 3 0 0 10 31 -15.370 -10.883 -0.001 IL 177 177 3 177 3 1 1 21 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 124 - U - - - ML 178 177 3 180 3 1 1 18 38 -2.637 -0.253 -18.376 -2.672 -0.866 -5.496 1.710 D 179 177 3 180 3 0 0 7 28 -15.370 -0.426 -1.968 IL 180 180 3 180 3 1 1 19 39 -1.317 -0.740 -15.219 0.000 0.000 0.000 0.000 [ MATL 29 ] 129 - A - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.897 -5.304 -2.926 -3.061 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 185 134 1 186 3 0 1 150 327 -19.748 -0.089 -4.062 IL 186 186 2 186 3 1 2 152 328 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 137 - A - - - ML 187 186 2 189 5 1 2 150 327 -3.501 -0.133 -18.407 -18.619 -19.511 1.141 -2.645 0.570 -2.735 D 188 186 2 189 5 0 1 145 322 -15.062 -1.631 -2.154 -1.145 -12.611 IL 189 189 3 189 5 1 2 155 332 -0.339 -2.255 -15.829 -17.661 -16.935 0.000 0.000 0.000 0.000 [ MATP 33 ] 147 183 c g - - MP 190 189 3 194 6 2 3 149 325 -6.620 -19.488 -0.016 -10.757 -18.545 -18.940 -8.263 -6.434 -2.067 1.724 -2.187 -4.019 2.573 -4.416 1.088 -0.138 -7.147 -2.749 1.507 -8.384 -3.137 -6.067 ML 191 189 3 194 6 1 2 126 303 -14.275 -14.621 -9.335 -0.003 -14.471 -12.000 -10.528 -9.318 -11.891 1.999 MR 192 189 3 194 6 1 2 147 324 -15.816 -14.545 -10.454 -14.523 -0.001 -12.737 1.507 -9.451 0.208 -9.367 D 193 189 3 194 6 0 0 132 309 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 2 148 324 -9.706 -9.969 -0.004 -11.624 -12.400 -12.061 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 147 324 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 149 182 C G - - MP 196 195 6 200 6 2 2 147 323 -19.548 -19.488 -0.062 -18.264 -7.886 -4.728 -13.844 -10.769 -13.844 1.090 -2.158 -0.441 3.145 -5.134 -13.702 -1.530 -14.216 -2.779 1.528 -10.277 -0.784 -3.677 ML 197 195 6 200 6 1 2 125 302 -14.333 -14.679 -4.620 -0.060 -14.529 -12.058 -8.155 -9.928 1.998 -8.915 MR 198 195 6 200 6 1 2 146 323 -15.816 -14.545 -0.002 -14.523 -9.657 -12.737 -8.875 1.860 -1.455 -8.350 D 199 195 6 200 6 0 0 123 300 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 145 322 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 145 322 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 150 181 U A - - MP 202 201 6 206 6 2 2 145 322 -7.408 -19.469 -0.147 -3.462 -18.525 -18.920 -5.357 -13.527 -13.826 -2.152 -12.692 -14.670 1.602 -2.707 -5.470 1.429 -14.198 -8.439 3.103 -5.874 -6.130 0.282 ML 203 201 6 206 6 1 1 120 297 -14.275 -14.621 -0.003 -9.030 -14.471 -12.000 -8.099 -9.872 1.998 -8.859 MR 204 201 6 206 6 1 1 118 295 -13.092 -11.821 -0.014 -11.800 -6.933 -10.013 1.994 -7.978 -7.251 -7.388 D 205 201 6 206 6 0 0 74 251 -18.845 -17.543 -13.340 -14.022 -0.002 -10.115 IL 206 206 5 206 6 1 1 119 296 -8.906 -9.169 -0.007 -10.824 -11.600 -11.261 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 132 309 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 152 180 G C - - MP 208 207 6 212 6 2 2 117 294 -7.422 -6.693 -0.079 -5.241 -18.417 -6.444 -14.918 -5.917 -14.842 -1.685 -15.331 -15.639 2.856 -15.067 -14.835 3.037 -15.229 -3.666 -3.173 -15.011 -5.053 -13.670 ML 209 207 6 212 6 1 1 165 342 -0.001 -17.290 -12.004 -11.699 -17.140 -14.669 2.000 -12.146 -11.393 -11.479 MR 210 207 6 212 6 1 1 57 234 -16.233 -14.962 -10.871 -14.940 -0.532 -1.700 -11.273 1.999 -12.003 -9.842 D 211 207 6 212 6 0 0 104 281 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 212 212 5 212 6 1 1 164 341 -0.150 -16.520 -3.339 -18.175 -18.951 -18.612 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 23 41 -8.623 -0.006 -12.134 -10.302 -11.408 0.000 0.000 0.000 0.000 [ MATP 37 ] 165 178 A U - - MP 214 213 6 218 4 2 2 22 40 -18.735 -5.876 -0.025 -17.356 -14.244 -0.630 -1.685 3.113 -5.596 -0.625 2.176 -8.280 -14.071 -1.597 -14.547 -11.568 -0.237 -14.403 -9.585 -5.599 ML 215 213 6 218 4 1 1 22 40 -0.005 -12.326 -8.892 -9.495 1.999 -10.316 -9.552 -9.655 MR 216 213 6 218 4 1 1 21 39 -13.728 -12.757 -0.002 -9.685 -8.970 -10.739 1.999 -9.727 D 217 213 6 218 4 0 0 16 33 -13.499 -13.180 -11.196 -0.001 IL 218 218 5 218 4 1 1 21 39 -10.281 -10.964 -0.002 -13.449 0.000 0.000 0.000 0.000 IR 219 219 6 219 3 1 1 21 39 -8.472 -0.005 -11.172 0.000 0.000 0.000 0.000 [ MATL 38 ] 167 - u - - - ML 220 219 6 222 3 1 1 20 38 -19.717 -0.000 -18.371 -1.096 0.278 -1.511 0.977 D 221 219 6 222 3 0 0 15 33 -15.613 -11.126 -0.001 IL 222 222 3 222 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 168 - U - - - ML 223 222 3 225 3 1 1 19 37 -19.717 -0.000 -18.371 -5.507 -1.816 -2.016 1.785 D 224 222 3 225 3 0 0 15 33 -15.613 -11.126 -0.001 IL 225 225 3 225 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 169 - u - - - ML 226 225 3 228 3 1 1 18 36 -19.717 -0.059 -4.641 0.149 -0.165 -0.288 0.239 D 227 225 3 228 3 0 0 15 33 -15.613 -11.126 -0.001 IL 228 228 3 228 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 170 - a - - - ML 229 228 3 231 3 1 1 17 35 -4.589 -0.061 -18.312 0.223 -0.191 -0.194 0.115 D 230 228 3 231 3 0 0 15 33 -17.120 -1.160 -0.856 IL 231 231 3 231 3 1 1 17 34 -9.767 -0.489 -1.805 0.000 0.000 0.000 0.000 [ MATL 42 ] 172 - c - - - ML 232 231 3 234 3 1 1 16 34 -19.682 -0.000 -18.336 -0.467 0.168 0.135 0.077 D 233 231 3 234 3 0 0 8 26 -16.682 -12.195 -0.000 IL 234 234 3 234 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 173 - A - - - ML 235 234 3 237 3 1 1 15 33 -4.346 -0.073 -18.336 1.844 -14.369 -1.812 -3.008 D 236 234 3 237 3 0 0 6 24 -16.682 -2.000 -0.415 IL 237 237 3 237 3 1 1 17 35 -1.502 -0.629 -13.360 0.000 0.000 0.000 0.000 [ MATL 44 ] 176 - A - - - ML 238 237 3 240 2 1 1 1 1 * 0.000 1.731 -1.624 -2.478 -2.500 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Thr ACC bact-Thr-r2-022416 LENG 76 MAXL 1199 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 21:04:28 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Thr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Thr-r2-022416.sto NSEQ 13370 EFFN 20.652826 CKSUM 93420263 STATS LOCAL MSV -8.5829 0.71898 STATS LOCAL VITERBI -9.3496 0.71898 STATS LOCAL FORWARD -3.3582 0.71898 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45732 1.38384 1.29458 1.41671 1.38629 1.38629 1.38629 1.38629 0.00969 5.33455 5.33455 1.46634 0.26236 0.00000 * 1 4.22073 4.47966 0.03531 4.74762 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00969 5.33455 5.33455 1.46634 0.26236 1.09861 0.40547 2 2.97007 0.48469 1.86758 1.72420 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03032 5.34964 3.68446 1.46634 0.26236 1.09861 0.40547 3 2.57768 0.59304 2.48683 1.24399 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03773 5.33097 3.43621 1.46634 0.26236 0.46502 0.98919 4 1.70900 2.23660 0.45484 2.55643 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.06943 2.78854 5.19198 0.15159 1.96142 0.44815 1.01836 5 1.28837 1.96852 0.73466 2.25428 6 g - - ( 1.38629 1.38629 1.38629 1.38629 0.00980 5.36050 5.28795 1.46634 0.26236 0.99534 0.46139 6 2.02666 1.10257 2.13332 0.87284 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.06836 2.86643 4.69144 1.03706 0.43772 0.88122 0.53491 7 1.57428 2.82325 0.72387 1.39207 13 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03229 4.65213 3.80614 0.79790 0.59834 0.79674 0.59929 8 3.81431 3.41238 4.18296 0.07286 15 U - - , 1.38629 1.38629 1.38629 1.38629 0.34264 1.25394 5.35451 4.33081 0.01324 0.33140 1.26555 9 0.22142 3.43727 1.95114 3.71488 105 A - - , 1.38629 1.38629 1.38629 1.38629 0.07269 5.38101 2.72562 1.46634 0.26236 1.09861 0.40547 10 3.12516 3.26336 0.12353 3.38104 106 G - - < 1.38629 1.38629 1.38629 1.38629 0.02337 5.31817 4.00622 1.46634 0.26236 0.90191 0.52053 11 2.95327 0.34844 2.55255 1.80692 107 C - - < 1.38629 1.38629 1.38629 1.38629 0.02765 3.88842 4.99117 0.86074 0.54965 2.59209 0.07781 12 2.66564 1.94674 2.13879 0.40061 110 U - - < 1.38629 1.38629 1.38629 1.38629 0.01907 4.26535 5.33019 0.58772 0.81101 0.60137 0.79420 13 2.27998 0.55250 2.41701 1.45663 112 C - - < 1.38629 1.38629 1.38629 1.38629 0.01627 4.47055 5.36139 0.68398 0.70240 0.66805 0.71889 14 0.09368 3.21442 4.02043 3.46407 114 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00931 5.37399 5.37399 1.46634 0.26236 1.39129 0.28602 15 1.30734 3.45751 0.40868 3.39854 115 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04657 5.37457 3.19741 1.46634 0.26236 1.47712 0.25915 16 2.62594 1.51008 2.75191 0.44172 116 U - - _ 1.38629 1.38629 1.38629 1.38629 0.38286 5.33769 1.16063 1.46634 0.26236 2.50246 0.08543 17 1.67193 1.78639 2.67728 0.55199 117 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15515 1.98952 4.96883 0.86582 0.54595 0.13788 2.04952 18 4.30918 5.54571 0.03929 3.85485 122 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34426 5.34426 1.46634 0.26236 0.70932 0.67724 19 4.57647 6.03546 0.01899 5.09482 123 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00940 5.36474 5.36474 1.46634 0.26236 1.87273 0.16688 20 2.91640 2.02485 3.95273 0.22985 124 U - - _ 1.38629 1.38629 1.38629 1.38629 0.16672 1.90460 5.36474 0.54319 0.86963 0.58830 0.81029 21 0.11423 3.76893 3.14581 3.17385 129 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03102 5.37689 3.65254 1.46634 0.26236 0.78864 0.60599 22 1.67313 2.70287 0.49313 2.00534 130 G - - > 1.38629 1.38629 1.38629 1.38629 0.03959 3.37813 5.35898 0.66315 0.72408 0.50719 0.92177 23 0.47364 2.09248 1.82900 2.37180 133 A - - > 1.38629 1.38629 1.38629 1.38629 0.02452 3.93230 5.37604 0.41957 1.07099 1.40518 0.28147 24 2.16232 2.52662 0.32675 2.47989 135 G - - > 1.38629 1.38629 1.38629 1.38629 0.00931 5.37604 5.37300 1.46634 0.26236 0.67461 0.71203 25 3.26760 0.19945 3.06385 2.34323 136 C - - > 1.38629 1.38629 1.38629 1.38629 0.06511 5.38099 2.83996 1.46634 0.26236 1.09658 0.40648 26 0.66029 2.78430 1.05962 2.59112 137 A - - , 1.38629 1.38629 1.38629 1.38629 0.09278 2.48000 5.32568 1.56064 0.23572 0.68568 0.70067 27 1.50497 1.13532 1.55765 1.40231 147 c - - < 1.38629 1.38629 1.38629 1.38629 0.01860 4.28985 5.35635 0.58687 0.81208 2.11521 0.12852 28 1.90066 0.70650 2.29900 1.35945 149 c - - < 1.38629 1.38629 1.38629 1.38629 0.04763 5.35635 3.17495 1.46634 0.26236 0.27604 1.42206 29 2.64430 1.42155 1.69215 0.68621 150 U - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.60787 5.34416 0.78148 0.61199 1.80212 0.18026 30 2.06095 1.07054 0.77378 2.67983 152 g - - < 1.38629 1.38629 1.38629 1.38629 0.10922 2.41531 4.25952 2.29577 0.10612 2.30932 0.10461 31 0.85508 1.25259 2.13876 1.76500 165 a - - < 1.38629 1.38629 1.38629 1.38629 0.03189 3.62811 5.33436 0.32914 1.27133 0.71476 0.67199 32 1.83435 1.25782 2.22858 0.80223 167 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00943 5.36171 5.36171 1.46634 0.26236 1.96731 0.15063 33 3.57115 2.54598 2.81378 0.18212 168 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00943 5.36171 5.36171 1.46634 0.26236 1.96731 0.15063 34 1.25234 1.54009 1.61423 1.20145 169 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04638 5.36171 3.20325 1.46634 0.26236 1.96731 0.15063 35 1.21682 1.55544 1.56711 1.25848 170 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03687 3.46308 5.32512 0.28615 1.39089 0.85720 0.55225 36 1.52416 1.36330 1.39513 1.27805 172 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 5.35051 4.19122 1.46634 0.26236 2.25392 0.11092 37 0.14391 4.10919 2.56637 3.19905 173 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05508 3.02022 5.34008 0.54052 0.87334 1.30451 0.31650 38 0.23539 2.43205 2.87091 2.72981 176 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05764 3.94103 3.30809 0.43274 1.04620 0.53915 0.87526 39 1.93781 1.94298 1.17051 0.91007 178 u - - > 1.38629 1.38629 1.38629 1.38629 0.10312 4.36281 2.46231 0.63441 0.75555 0.18777 1.76496 40 2.87362 0.74736 0.99596 2.29734 180 c - - > 1.38629 1.38629 1.38629 1.38629 0.06012 5.30064 2.93064 1.46634 0.26236 0.10661 2.29138 41 0.83292 1.77503 1.35843 1.97558 181 a - - > 1.38629 1.38629 1.38629 1.38629 0.01021 5.33534 5.23307 1.46634 0.26236 0.45354 1.00889 42 1.53081 2.18983 0.69919 1.74460 182 g - - > 1.38629 1.38629 1.38629 1.38629 0.00937 5.36833 5.36833 1.46634 0.26236 1.64474 0.21451 43 1.23801 2.09465 1.05270 1.43578 183 g - - > 1.38629 1.38629 1.38629 1.38629 0.00936 5.36883 5.36883 1.46634 0.26236 0.43890 1.03492 44 0.39353 2.48425 2.31550 1.94335 184 A - - , 1.38629 1.38629 1.38629 1.38629 0.11790 5.38101 2.23859 1.46634 0.26236 1.09861 0.40547 45 3.02661 3.34205 0.15245 2.85498 185 G - - , 1.38629 1.38629 1.38629 1.38629 0.16088 1.94155 5.27342 2.27392 0.10860 0.19998 1.70784 46 2.16999 3.46250 0.25502 2.53111 207 G - - , 1.38629 1.38629 1.38629 1.38629 0.05148 5.36915 3.08967 1.46634 0.26236 1.71566 0.19826 47 2.08643 2.63494 3.52845 0.25515 208 U - - , 1.38629 1.38629 1.38629 1.38629 0.04947 5.32744 3.13700 1.46634 0.26236 0.31909 1.29759 48 2.15780 0.41421 3.46167 1.64933 209 C - - , 1.38629 1.38629 1.38629 1.38629 0.00995 5.33459 5.28196 1.46634 0.26236 2.55369 0.08099 49 1.44874 2.25248 0.51544 2.76847 210 G - - < 1.38629 1.38629 1.38629 1.38629 0.00969 5.33433 5.33433 1.46634 0.26236 1.48670 0.25634 50 2.04932 0.91910 1.37989 1.51096 211 c - - < 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 51 1.63250 1.33718 0.85017 2.16601 212 g - - < 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 52 1.21912 2.92000 0.51846 2.89787 213 G - - < 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 53 4.08623 5.28584 0.03592 4.31156 214 G - - < 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 54 3.99889 4.01851 4.77871 0.04575 215 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 55 4.01106 3.57007 4.34681 0.06104 216 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 56 4.29255 0.04157 4.56394 4.09696 217 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 57 1.01461 4.08061 0.51536 3.76050 218 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 58 0.03365 4.70996 4.36123 4.48058 219 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 59 1.48838 1.75156 1.44454 1.00812 220 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 60 3.59715 2.50093 4.20518 0.13276 221 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 61 4.76137 0.03858 5.09525 3.76519 222 C - - > 1.38629 1.38629 1.38629 1.38629 0.00960 5.34354 5.34354 1.46634 0.26236 2.39695 0.09540 62 3.09591 0.50601 2.76634 1.24141 223 C - - > 1.38629 1.38629 1.38629 1.38629 0.01552 4.87421 4.85902 0.98139 0.46967 0.20909 1.66770 63 2.53537 1.07384 1.29065 1.19078 225 c - - > 1.38629 1.38629 1.38629 1.38629 0.01599 4.48804 5.37779 0.68463 0.70174 1.30750 0.31539 64 1.69112 1.76792 0.86775 1.49118 227 g - - > 1.38629 1.38629 1.38629 1.38629 0.01430 4.64783 5.37779 0.78574 0.60841 1.30750 0.31539 65 3.02900 0.82277 2.19071 0.91482 229 c - - > 1.38629 1.38629 1.38629 1.38629 0.01312 5.37712 4.77769 1.46634 0.26236 0.77868 0.61435 66 1.54337 0.86325 2.37470 1.30375 230 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00931 5.37431 5.37431 1.46634 0.26236 1.34053 0.30341 67 1.17503 2.26366 0.92417 1.65885 231 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01246 5.37431 4.86075 1.46634 0.26236 1.34053 0.30341 68 2.70867 0.88493 1.73346 1.06723 232 c - - ) 1.38629 1.38629 1.38629 1.38629 0.04592 5.37120 3.21305 1.46634 0.26236 1.50237 0.25180 69 2.98576 0.53493 2.05460 1.44544 233 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01000 5.33496 5.27329 1.46634 0.26236 0.60236 0.79301 70 1.42877 2.56990 0.51218 2.46904 234 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02778 3.78518 5.36154 0.37206 1.16896 1.81934 0.17690 71 1.97178 2.09754 0.40790 2.61745 236 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00943 5.36184 5.36184 1.46634 0.26236 0.36797 1.17811 72 4.33802 0.05685 4.25670 3.57451 237 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03190 3.62010 5.37811 0.95492 0.48588 1.09861 0.40547 73 0.62018 2.25886 2.73990 1.22722 242 A - - : 1.38629 1.38629 1.38629 1.38629 0.20101 5.05521 1.73889 1.46634 0.26236 1.09861 0.40547 74 4.88991 0.02726 5.25020 4.26009 243 C - - : 1.38629 1.38629 1.38629 1.38629 0.01547 4.86967 4.86967 1.46634 0.26236 3.38638 0.03442 75 4.88991 0.02726 5.25020 4.26009 244 C - - : 1.38629 1.38629 1.38629 1.38629 0.01547 4.86967 4.86967 1.46634 0.26236 3.38638 0.03442 76 0.02031 5.22518 4.82848 5.00139 245 A - - : 1.38629 1.38629 1.38629 1.38629 0.00777 4.86197 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Trp ACC bact-Trp-r2-022416 STATES 230 NODES 61 CLEN 72 W 1191 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 21:16:41 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Trp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Trp-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Trp-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Trp-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4502 EFFN 4502.000000 CKSUM 2586054545 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.1293 0.71930 ECMLC 0.59130 -8.29917 2.06425 1600000 550190 0.002181 ECMGC 0.32915 -43.13655 -30.23747 1600000 27924 0.014325 ECMLI 0.57826 -8.00404 2.46673 1600000 511404 0.002346 ECMGI 0.35535 -39.26497 -27.47812 1600000 26369 0.015169 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1191 2545 -17.063 -18.308 -0.000 -14.762 IL 1 1 2 1 4 20 43 1195 2549 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 44 1195 2549 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 223 - G - - MR 3 2 3 5 5 27 49 1194 2548 -6.908 -0.090 -16.926 -4.264 -18.030 0.074 -3.376 1.473 -3.738 D 4 2 3 5 5 17 40 1191 2545 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 24 45 1194 2548 -7.064 -0.017 -10.575 -8.742 -9.848 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 221 A U - - MP 6 5 3 10 6 28 49 1193 2547 -17.963 -17.902 -0.000 -16.679 -16.959 -17.354 -3.957 -4.705 -11.815 3.004 -12.953 -12.423 -2.997 -12.496 -12.240 2.744 -12.493 -0.138 -3.263 -11.679 -4.856 -10.776 ML 7 5 3 10 6 19 42 1190 2544 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 24 45 1190 2544 -15.190 -13.919 -4.781 -13.897 -0.054 -12.110 -11.000 -9.738 -12.422 1.999 D 9 5 3 10 6 15 37 1184 2539 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 43 1192 2546 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 43 1192 2546 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 220 g c - - MP 12 11 6 16 6 26 47 1191 2545 -17.966 -17.905 -0.029 -5.651 -16.961 -17.357 -12.091 -10.959 -11.957 -1.069 -12.093 -12.613 2.740 -12.238 -12.219 2.991 -5.006 -1.810 -0.982 -11.894 -4.781 -5.005 ML 13 11 6 16 6 19 42 1188 2542 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 23 45 1189 2543 -15.138 -13.867 -7.577 -13.845 -0.008 -12.059 -8.690 -2.520 -9.495 1.934 D 15 11 6 16 6 15 37 1183 2537 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 43 1190 2544 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 43 1190 2544 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 219 G C - - MP 18 17 6 22 6 25 46 1189 2543 -17.937 -17.877 -0.000 -16.653 -16.933 -17.328 -13.958 -12.472 -14.129 0.237 -15.953 -15.518 -4.365 -14.264 -13.659 3.855 -14.221 -2.783 -3.263 -14.731 -13.151 -4.158 ML 19 17 6 22 6 21 42 1186 2540 -13.201 -13.548 -8.262 -0.006 -13.397 -10.927 -8.104 1.995 -8.603 -7.068 MR 20 17 6 22 6 22 44 1188 2542 -15.132 -13.861 -0.072 -13.839 -4.377 -12.053 -8.877 1.968 -9.267 -3.555 D 21 17 6 22 6 15 36 1182 2536 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 19 42 1188 2542 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 42 1188 2542 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 218 G C - - MP 24 23 6 28 6 23 44 1187 2541 -18.009 -17.948 -0.000 -16.725 -17.005 -17.400 -12.254 -10.909 -12.080 2.561 -13.061 -12.700 -0.083 -12.695 -12.469 3.022 -12.734 -5.182 -0.540 -11.970 -1.673 -11.029 ML 25 23 6 28 6 20 41 1185 2539 -13.201 -13.548 -8.262 -0.006 -13.397 -10.927 -7.078 -8.850 1.995 -7.840 MR 26 23 6 28 6 19 40 1183 2538 -10.800 -9.529 -5.438 -9.507 -0.046 -7.721 -4.919 1.957 -5.457 -4.005 D 27 23 6 28 6 15 36 1181 2535 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 41 1186 2540 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 41 1186 2540 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 217 G C - - MP 30 29 6 34 6 21 42 1185 2539 -18.009 -17.948 -0.000 -16.725 -17.005 -17.400 -6.878 -4.624 -8.802 0.165 -12.921 -4.219 1.695 -12.482 -12.230 3.458 -8.636 -2.693 -2.992 -11.646 -1.936 -10.757 ML 31 29 6 34 6 19 40 1184 2538 -13.201 -13.548 -8.262 -0.006 -13.397 -10.927 -7.078 -8.850 1.995 -7.840 MR 32 29 6 34 6 18 39 1182 2537 -10.800 -9.529 -5.438 -9.507 -0.046 -7.721 -1.007 1.702 -3.998 -2.421 D 33 29 6 34 6 15 36 1180 2534 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 40 1184 2539 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 40 1184 2538 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 216 c g - - MP 36 35 6 40 6 19 40 1183 2537 -5.681 -17.948 -0.037 -7.433 -17.005 -17.400 -12.721 -12.449 -12.672 1.068 -11.484 -13.438 2.854 -12.166 -12.550 0.695 -13.030 -10.040 0.915 -12.882 1.652 -5.302 ML 37 35 6 40 6 18 39 1183 2537 -13.201 -13.548 -8.262 -0.006 -13.397 -10.927 -7.078 -8.850 1.995 -7.840 MR 38 35 6 40 6 17 38 1181 2536 -10.800 -9.529 -2.586 -9.507 -0.277 -7.721 1.685 -3.735 -0.685 -3.522 D 39 35 6 40 6 15 35 1179 2533 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 39 1182 2536 -9.111 -9.374 -0.006 -11.029 -11.805 -11.465 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 39 1182 2536 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 215 G C - - MP 42 41 6 46 4 17 38 1181 2535 -6.141 -17.437 -0.034 -6.763 -13.030 -11.609 -12.899 1.421 -13.644 -13.387 -1.476 -13.365 -13.049 3.485 -13.343 -7.451 0.780 -12.796 -4.597 -11.816 ML 43 41 6 46 4 17 38 1182 2536 -10.663 -0.389 -2.093 -9.575 1.621 -6.629 -7.137 -0.139 MR 44 41 6 46 4 16 37 1180 2534 -8.587 -7.616 -0.075 -4.544 -4.669 1.948 -5.244 -3.745 D 45 41 6 46 4 14 35 1179 2533 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 37 1181 2535 -1.004 -9.648 -1.001 -12.134 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 37 1181 2535 -1.004 -0.998 -10.861 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - U - - - ML 48 47 6 50 3 15 36 1179 2533 -18.165 -0.000 -16.819 -11.950 -5.446 -6.223 1.987 D 49 47 6 50 3 14 35 1178 2532 -12.807 -0.010 -7.198 IL 50 50 3 50 3 15 36 1180 2534 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - A - - - ML 51 50 3 53 2 14 35 1178 2532 -18.834 -0.000 1.745 -1.656 -1.597 -12.281 D 52 50 3 53 2 13 34 1177 2531 -8.445 -0.004 IL 53 53 3 53 2 14 35 1179 2533 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 124 55 13 34 1177 2531 [ BEGR 42 ] - - - - - - S 55 54 1 56 3 0 3 1144 2498 -18.178 -0.000 -16.832 IL 56 56 2 56 3 1 4 1147 2501 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 59 - a - - - ML 57 56 2 59 3 1 3 1144 2498 -18.178 -0.277 -2.515 0.537 -0.968 0.420 -0.514 D 58 56 2 59 3 0 1 1159 2513 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 1142 2496 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 60 - G - - - ML 60 59 3 62 3 1 2 1137 2491 -1.387 -0.695 -16.555 0.358 -2.690 1.010 -0.866 D 61 59 3 62 3 0 1 1167 2521 -0.770 -1.392 -4.949 IL 62 62 3 62 3 1 7 1206 2560 -0.020 -6.210 -20.523 0.000 0.000 0.000 0.000 [ MATL 45 ] 188 - G - - - ML 63 62 3 65 3 1 1 54 96 -1.400 -1.120 -2.635 -3.715 -2.051 1.630 -0.770 D 64 62 3 65 3 0 0 37 78 -12.140 -7.653 -0.008 IL 65 65 3 65 3 1 4 56 97 -0.644 -1.474 -15.638 0.000 0.000 0.000 0.000 [ MATL 46 ] 193 - A - - - ML 66 65 3 68 3 1 2 26 44 -17.917 -0.000 -16.571 1.063 -2.992 -3.317 0.753 D 67 65 3 68 3 0 0 25 43 -17.004 -0.001 -11.396 IL 68 68 3 68 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 194 - U - - - ML 69 68 3 71 5 1 1 25 43 -17.111 -0.000 -16.926 -17.139 -18.030 -4.562 -0.753 -3.638 1.715 D 70 68 3 71 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 27 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 195 212 G C - - MP 72 71 3 76 6 2 2 24 42 -18.040 -7.173 -0.010 -16.756 -17.036 -17.431 -12.184 -10.804 -12.013 0.584 -13.131 -12.581 -0.444 -12.686 -12.404 3.655 -12.657 -0.310 -1.731 -11.862 -4.046 -10.973 ML 73 71 3 76 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 23 41 -6.812 -0.020 -10.323 -8.491 -9.597 0.000 0.000 0.000 0.000 [ MATP 49 ] 196 210 C G - - MP 78 77 6 82 6 2 2 22 40 -18.040 -17.979 -0.000 -16.756 -17.036 -17.431 -12.333 -12.035 -12.334 0.393 -4.882 -5.416 3.018 -3.658 -12.192 -1.307 -12.706 1.665 1.229 -5.259 -1.782 -2.243 ML 79 77 6 82 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 197 209 a u - - MP 84 83 6 88 6 2 2 20 38 -18.040 -17.979 -0.000 -16.756 -17.036 -17.431 -12.021 -5.058 -11.840 2.804 -4.036 -12.439 -0.050 -12.528 -12.275 2.264 -12.523 1.378 -0.868 -11.697 -10.046 -6.903 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 198 208 G C - - MP 90 89 6 94 6 2 2 18 36 -18.040 -17.979 -0.000 -16.756 -17.036 -17.431 -15.727 -8.439 -17.262 0.329 -17.445 -13.855 -4.029 -17.002 -13.957 3.871 -14.180 -10.491 -12.218 -14.289 -4.389 -16.066 ML 91 89 6 94 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 199 207 G C - - MP 96 95 6 100 4 2 2 15 34 -17.269 -17.476 -0.000 -15.890 -15.998 -12.596 -18.456 -10.083 -17.617 -13.750 -11.899 -17.853 -13.966 3.992 -14.156 -3.455 -12.267 -14.221 -14.355 -17.621 ML 97 95 6 100 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 200 - U - - - ML 102 101 6 104 3 1 1 13 31 -18.178 -0.000 -16.832 -5.488 -11.329 -6.489 1.988 D 103 101 6 104 3 0 0 19 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 201 - U - - - ML 105 104 3 107 3 1 1 12 30 -18.178 -0.000 -16.832 -15.489 -14.094 -17.086 2.000 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 202 - C - - - ML 108 107 3 110 3 1 1 10 29 -18.178 -0.000 -16.832 -5.286 1.972 -6.990 -4.522 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 203 - G - - - ML 111 110 3 113 3 1 1 9 28 -18.178 -0.000 -16.832 -0.798 -6.969 1.769 -6.950 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 204 - A - - - ML 114 113 3 116 3 1 1 8 26 -18.178 -0.000 -16.832 1.992 -7.002 -6.997 -6.996 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 205 - c - - - ML 117 116 3 119 3 1 1 6 24 -18.178 -0.000 -16.832 -0.307 0.467 -0.035 -0.263 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 206 - U - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 -4.572 -2.560 -4.778 1.908 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 [ BEGL 12 ] - - - - - - S 124 54 1 125 1 2 13 44 61 0.000 [ BIF 13 ] - - - - - - B 125 124 1 126 173 2 13 44 61 [ BEGL 14 ] - - - - - - S 126 125 1 127 4 0 4 24 41 -0.007 -16.170 -7.713 -16.217 [ MATP 15 ] 13 35 G C - - MP 127 126 1 131 6 2 6 24 41 -18.033 -17.973 -0.005 -8.243 -17.029 -17.424 -12.435 -11.073 -12.289 -0.974 -5.120 -12.983 -4.414 -12.911 -3.679 3.641 -12.925 1.375 -2.161 -12.219 -10.560 -4.477 ML 128 126 1 131 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 1 131 6 1 1 24 41 -11.783 -10.512 -0.036 -10.490 -5.624 -8.704 0.932 -4.932 1.015 -4.670 D 130 126 1 131 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 34 u a - - MP 133 132 6 137 6 2 6 22 39 -6.575 -17.975 -0.015 -16.751 -17.031 -17.426 -15.092 -15.374 -5.078 -11.610 -12.761 -14.554 2.658 -13.676 -14.514 -1.640 -14.634 -13.777 3.000 -14.926 0.418 -13.315 ML 134 132 6 137 6 1 1 22 40 -10.728 -11.074 -0.039 -5.483 -10.924 -8.454 -4.818 -6.440 1.975 -5.555 MR 135 132 6 137 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 22 39 -8.256 -8.518 -0.012 -10.174 -10.950 -10.610 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 33 U A - - MP 139 138 6 143 6 2 4 20 37 -4.903 -17.979 -0.049 -16.756 -14.048 -17.431 -12.430 -5.041 -12.418 -0.950 -6.203 -1.920 -0.566 -11.944 -9.537 1.027 -12.791 -4.221 3.632 -12.601 -7.091 -11.006 ML 140 138 6 143 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 19 37 -9.913 -10.176 -0.004 -11.831 -12.607 -12.267 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 18 32 C G - - MP 145 144 6 149 4 2 2 18 35 -17.269 -17.476 -0.004 -8.494 -15.077 -15.347 -4.274 -2.761 -0.136 -14.553 3.477 -3.625 -4.092 -11.536 -14.629 -13.723 0.403 -14.916 1.087 -2.587 ML 146 144 6 149 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 24 42 -5.227 -4.256 -2.123 -0.532 0.071 -0.811 0.632 -0.269 D 148 144 6 149 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 149 149 5 149 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 151 150 6 153 3 1 2 16 32 -18.174 -0.000 -16.828 1.958 -4.601 -5.615 -4.265 D 152 150 6 153 3 0 0 16 35 -11.166 -5.180 -0.041 IL 153 153 3 153 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 154 153 3 156 3 1 1 15 31 -18.174 -0.024 -5.952 1.743 -4.875 -0.748 -5.394 D 155 153 3 156 3 0 0 15 33 -11.141 -6.654 -0.015 IL 156 156 3 156 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - c - - - ML 157 156 3 159 3 1 1 14 29 -1.545 -0.606 -16.805 -0.709 0.891 -5.068 0.589 D 158 156 3 159 3 0 0 12 29 -13.875 -0.005 -8.267 IL 159 159 3 159 3 1 1 14 29 -2.925 -0.204 -14.204 0.000 0.000 0.000 0.000 [ MATL 22 ] 25 - G - - - ML 160 159 3 162 3 1 1 12 27 -18.178 -0.000 -16.832 -6.028 -14.468 1.988 -5.811 D 161 159 3 162 3 0 0 16 34 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - G - - - ML 163 162 3 165 3 1 1 11 26 -18.178 -0.000 -16.832 -6.126 -14.476 1.995 -13.449 D 164 162 3 165 3 0 0 15 33 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - U - - - ML 166 165 3 168 3 1 1 10 19 -2.633 -0.254 -16.832 -4.145 -0.300 -5.544 1.637 D 167 165 3 168 3 0 0 7 17 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 10 19 -2.875 -0.212 -13.152 0.000 0.000 0.000 0.000 [ MATL 25 ] 31 - A - - - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.824 -6.945 -1.202 -5.873 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 173 125 1 174 3 0 2 26 44 -18.178 -0.000 -16.832 IL 174 174 2 174 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - A - - - ML 175 174 2 177 5 1 2 26 44 -17.111 -0.021 -16.926 -6.096 -18.030 1.271 -3.346 0.377 -2.394 D 176 174 2 177 5 0 0 26 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 177 177 3 177 5 1 1 28 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 37 58 u a - - MP 178 177 3 182 6 2 7 25 43 -18.019 -17.958 -0.379 -2.113 -17.014 -17.410 -5.677 -2.533 -9.377 1.762 -2.937 -7.172 1.667 -3.654 -1.747 1.240 -8.897 1.324 1.851 -3.601 -3.136 -4.213 ML 179 177 3 182 6 1 1 26 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 3 182 6 1 1 23 40 -13.370 -12.099 -8.008 -12.077 -7.211 -0.016 -6.787 0.895 1.084 -6.507 D 181 177 3 182 6 0 0 24 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 27 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 57 C G - - MP 184 183 6 188 6 2 6 23 41 -17.640 -17.579 -0.000 -16.355 -16.635 -17.030 -11.998 -11.702 -11.991 1.253 -4.667 -12.825 3.351 -11.507 -11.852 -2.994 -12.361 -2.441 0.457 -12.178 0.752 -7.389 ML 185 183 6 188 6 1 4 21 40 -16.783 -17.129 -7.827 -0.006 -16.979 -14.508 -12.425 -11.939 1.138 0.847 MR 186 183 6 188 6 1 1 24 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 6 188 6 0 0 21 39 -15.977 -14.676 -1.089 -11.155 -11.172 -0.919 IL 188 188 5 188 6 1 1 25 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 56 G C - - MP 190 189 6 194 6 2 4 21 39 -6.744 -17.594 -0.118 -16.370 -3.858 -17.045 -2.790 -4.484 -11.526 1.029 -12.663 -12.122 0.288 -12.208 -11.944 3.587 -12.197 -1.655 -2.226 -11.384 -9.737 -10.487 ML 191 189 6 194 6 1 4 20 39 -16.777 -17.123 -11.837 -0.000 -16.973 -14.502 -13.326 -11.946 -14.901 2.000 MR 192 189 6 194 6 1 1 21 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 18 37 -15.063 -13.761 -9.558 -10.240 -10.258 -0.004 IL 194 194 5 194 6 1 1 21 38 -7.718 -7.981 -0.017 -9.636 -10.412 -10.072 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 23 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 55 G C - - MP 196 195 6 200 6 2 4 19 37 -2.458 -17.491 -0.290 -16.267 -16.547 -16.942 -14.668 -6.849 -15.358 -1.826 -16.141 -13.317 -0.805 -15.593 -5.303 3.877 -13.592 -1.939 -2.684 -13.583 -13.080 -14.232 ML 197 195 6 200 6 1 3 19 38 -0.001 -17.123 -11.837 -11.531 -16.973 -14.502 -12.629 2.000 -13.503 -11.019 MR 198 195 6 200 6 1 2 18 37 -15.211 -13.940 -9.849 -13.918 -0.002 -12.132 -11.026 -9.762 -12.452 1.999 D 199 195 6 200 6 0 0 18 37 -15.063 -13.761 -9.558 -10.240 -10.258 -0.004 IL 200 200 5 200 6 1 2 18 37 -13.320 -1.100 -1.057 -4.238 -16.014 -15.675 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 5 17 35 -3.682 -0.117 -14.959 -13.126 -14.232 0.000 0.000 0.000 0.000 [ MATP 33 ] 43 52 U A - - MP 202 201 6 206 4 2 4 16 34 -17.149 -17.356 -0.000 -15.771 -13.698 -3.677 -13.453 1.603 -12.087 -0.075 -0.982 -5.900 -6.885 -3.897 -13.761 -11.257 3.487 -13.770 -3.134 -7.543 ML 203 201 6 206 4 1 1 19 38 -10.289 -10.471 -7.038 -0.013 1.996 -8.583 -7.833 -7.957 MR 204 201 6 206 4 1 1 17 36 -13.237 -12.266 -10.133 -0.002 -8.488 -10.260 1.998 -9.247 D 205 201 6 206 4 0 0 18 37 -10.486 -10.168 -8.183 -0.007 IL 206 206 5 206 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 207 207 6 207 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 44 - C - - - ML 208 207 6 210 3 1 2 13 31 -18.059 -0.000 -16.713 -6.829 1.768 -6.718 -0.797 D 209 207 6 210 3 0 0 12 31 -15.945 -11.458 -0.001 IL 210 210 3 210 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 45 - U - - - ML 211 210 3 213 3 1 1 12 30 -18.059 -0.000 -16.713 -6.035 -11.227 -5.963 1.989 D 212 210 3 213 3 0 0 11 30 -15.945 -0.001 -10.336 IL 213 213 3 213 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 46 - c - - - ML 214 213 3 216 3 1 1 10 29 -18.178 -0.000 -16.832 0.078 0.715 -0.705 -0.535 D 215 213 3 216 3 0 0 17 35 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 47 - a - - - ML 217 216 3 219 3 1 1 9 27 -18.178 -0.000 -16.832 0.395 0.394 -0.545 -0.543 D 218 216 3 219 3 0 0 16 34 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 48 - a - - - ML 220 219 3 222 3 1 1 7 26 -18.178 -0.000 -16.832 0.595 -0.545 -0.499 0.133 D 221 219 3 222 3 0 0 15 33 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 49 - A - - - ML 223 222 3 225 3 1 1 4 7 -2.237 -0.344 -13.857 1.723 -3.050 -3.404 -1.051 D 224 222 3 225 3 0 0 3 6 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 4 6 -10.636 -0.001 -13.336 0.000 0.000 0.000 0.000 [ MATL 40 ] 51 - A - - - ML 226 225 3 228 2 1 1 1 1 * 0.000 1.897 -4.935 -2.224 -5.153 D 227 225 3 228 2 0 0 0 0 * 0.000 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 229 228 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Trp ACC bact-Trp-r2-022416 LENG 72 MAXL 1176 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 21:16:42 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Trp-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Trp-r2-022416.sto NSEQ 4502 EFFN 19.736952 CKSUM 2586054545 STATS LOCAL MSV -7.9944 0.71930 STATS LOCAL VITERBI -9.1837 0.71930 STATS LOCAL FORWARD -3.6338 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46188 1.39934 1.27111 1.42328 1.38629 1.38629 1.38629 1.38629 0.05338 5.31612 3.05625 1.46634 0.26236 0.00000 * 1 0.91896 3.13114 0.67976 2.98264 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01031 5.27306 5.27306 1.46634 0.26236 2.44944 0.09030 2 2.43649 1.09132 0.73112 2.34978 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01029 5.27478 5.27478 1.46634 0.26236 2.44944 0.09030 3 2.16114 3.34542 0.21402 3.16460 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01029 5.27497 5.27497 1.46634 0.26236 0.18957 1.75629 4 1.17611 2.53735 0.64525 2.43140 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00985 5.31857 5.31857 1.46634 0.26236 1.09861 0.40547 5 2.07307 1.77524 0.44536 2.74630 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00985 5.31857 5.31857 1.46634 0.26236 1.09861 0.40547 6 1.99075 0.88836 1.99916 1.15002 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02726 3.81721 5.31857 0.39828 1.11313 1.09861 0.40547 7 1.68120 2.90345 0.44243 2.14953 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03059 4.06125 4.35070 0.89574 0.52477 1.09861 0.40547 8 4.02080 3.70606 4.30624 0.05763 11 U - - , 1.38629 1.38629 1.38629 1.38629 0.00991 5.31262 5.31262 1.46634 0.26236 0.56506 0.84009 9 0.21423 2.51562 2.41614 3.78267 12 A - - , 1.38629 1.38629 1.38629 1.38629 0.01412 5.32063 4.69635 1.46634 0.26236 1.09861 0.40547 10 2.32000 3.18533 0.21687 2.89448 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00987 5.31639 5.31639 1.46634 0.26236 0.72817 0.65931 11 3.48636 0.94608 2.91901 0.64029 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.01931 4.25217 5.32063 0.58585 0.81335 1.09861 0.40547 12 2.60131 1.89969 1.85220 0.47914 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04051 3.35928 5.31124 0.26091 1.47120 1.09861 0.40547 13 2.82950 0.48441 2.69836 1.35642 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01232 5.32059 4.91299 1.46634 0.26236 1.10175 0.40390 14 0.06136 3.90447 4.11371 3.77157 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00985 5.31812 5.31812 1.46634 0.26236 1.24698 0.33880 15 0.21403 3.81691 1.90341 3.83425 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02451 5.31817 3.94697 1.46634 0.26236 1.25368 0.33611 16 1.80040 0.82413 3.36687 1.01706 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.37882 1.17002 5.30366 0.16734 1.87024 0.37165 1.16989 17 4.54669 5.94631 0.02128 4.84833 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 18 4.63207 6.10222 0.01631 5.47142 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 19 3.32181 1.68317 3.96387 0.27557 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.16692 1.90484 5.32064 0.19936 1.71066 1.09861 0.40547 20 0.15503 4.27439 2.18031 4.09356 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 21 1.70881 2.91662 0.37904 2.52218 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 22 0.51367 1.86070 1.84991 2.42034 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.01279 5.32063 4.85123 1.46634 0.26236 1.09861 0.40547 23 0.80519 3.04966 0.75817 3.29419 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.00986 5.31770 5.31770 1.46634 0.26236 0.81126 0.58752 24 3.02608 0.39324 3.00416 1.48261 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 25 0.56138 3.02003 1.19829 2.53742 36 A - - , 1.38629 1.38629 1.38629 1.38629 0.02309 5.32063 4.02071 1.46634 0.26236 1.09861 0.40547 26 1.49369 1.48269 1.28642 1.30132 37 g - - < 1.38629 1.38629 1.38629 1.38629 0.00996 5.30750 5.30750 1.46634 0.26236 1.73502 0.19407 27 1.92969 0.79990 1.93726 1.34195 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.00996 5.30750 5.30750 1.46634 0.26236 0.91823 0.50953 28 1.90770 2.51581 0.55377 1.62963 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.06589 4.47887 2.94842 0.71791 0.66898 1.48292 0.25744 29 2.82106 1.68143 0.33104 3.31942 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.42665 1.07254 5.26508 0.02995 3.52328 2.64285 0.07382 30 1.64367 1.76544 2.55213 0.58393 43 U - - < 1.38629 1.38629 1.38629 1.38629 0.02860 5.26508 3.77117 1.46634 0.26236 2.64285 0.07382 31 3.77432 0.19432 4.32503 1.96310 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01058 5.24706 5.24706 1.46634 0.26236 2.86264 0.05881 32 3.76111 3.77974 4.17110 0.06350 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01058 5.24706 5.24706 1.46634 0.26236 0.12130 2.16949 33 1.30036 1.04276 1.83346 1.53606 46 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 34 1.13658 1.24001 1.74516 1.53672 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 35 1.03188 1.72718 1.71485 1.25216 48 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 36 0.24263 2.98708 3.19340 2.08767 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.22211 1.63872 5.30995 0.04961 3.02826 1.09861 0.40547 37 0.11037 3.83383 2.79996 3.81391 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03412 5.32058 3.55239 1.46634 0.26236 1.09150 0.40904 38 0.64753 2.26922 1.71130 1.64692 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.20135 2.75685 2.12959 0.31608 1.30565 0.56791 0.83634 39 3.34874 0.23989 2.90721 2.09131 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.12216 5.19502 2.21228 1.46634 0.26236 3.30108 0.03754 40 2.91583 0.44279 2.31030 1.58782 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.02148 5.08531 4.19521 1.46634 0.26236 3.82611 0.02204 41 1.86141 2.68377 0.50213 1.76610 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.01256 5.07639 5.07639 1.46634 0.26236 0.04319 3.16377 42 1.39008 1.72144 1.37902 1.13846 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 43 1.06316 1.92987 1.21952 1.54133 59 a - - , 1.38629 1.38629 1.38629 1.38629 0.07718 5.32064 2.66802 1.46634 0.26236 1.09861 0.40547 44 1.19241 2.59203 0.79095 1.78243 60 g - - , 1.38629 1.38629 1.38629 1.38629 0.52664 0.90588 5.25397 4.29409 0.01374 0.20665 1.67826 45 2.79884 2.67755 0.31461 1.96389 188 G - - , 1.38629 1.38629 1.38629 1.38629 0.67637 1.07006 1.90681 1.02675 0.44343 1.39199 0.28579 46 0.75415 2.55285 2.66545 0.96191 193 a - - , 1.38629 1.38629 1.38629 1.38629 0.01154 5.16056 5.16056 1.46634 0.26236 0.06203 2.81098 47 3.41486 1.96822 3.51669 0.22600 194 U - - , 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 48 1.98933 2.69758 0.30522 2.83217 195 G - - < 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 49 2.16061 0.82602 1.53209 1.46588 196 c - - < 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 50 1.03935 2.50467 0.70335 2.66369 197 g - - < 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 51 2.49690 4.38499 0.11409 4.34134 198 G - - < 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 52 4.32412 5.43642 0.02222 5.43119 199 G - - < 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 53 3.75223 3.84004 4.28036 0.06059 200 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 54 5.32113 4.97178 5.91210 0.01463 201 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 55 4.30930 0.04341 4.79335 3.87525 202 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 56 1.97439 4.31638 0.18638 4.02592 203 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 57 0.01961 5.19746 4.90102 5.04379 204 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 58 1.46484 1.19420 1.48875 1.42593 205 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 59 3.51197 2.88876 3.90300 0.11167 206 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 60 5.44585 0.03221 5.34437 3.78950 207 C - - > 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 61 4.70167 0.12380 4.11086 2.39720 208 C - - > 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 62 2.80519 0.98770 2.42902 0.73616 209 u - - > 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 63 1.67173 2.50340 0.76574 1.32695 210 g - - > 1.38629 1.38629 1.38629 1.38629 0.01610 4.50247 5.32063 0.72833 0.65916 1.09861 0.40547 64 3.07782 0.38152 2.55001 1.64487 212 C - - > 1.38629 1.38629 1.38629 1.38629 0.03224 3.82673 4.61063 0.40098 1.10765 1.09861 0.40547 65 2.27243 0.47013 2.74521 1.57124 215 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02717 5.31556 3.82166 1.46634 0.26236 0.68475 0.70161 66 1.79769 2.10672 0.57695 1.89001 216 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01000 5.30360 5.30360 1.46634 0.26236 1.86477 0.16834 67 3.13686 0.48613 1.67643 1.86732 217 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01000 5.30360 5.30360 1.46634 0.26236 1.86477 0.16834 68 2.72993 0.69374 2.29845 1.09465 218 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01000 5.30360 5.30360 1.46634 0.26236 1.86477 0.16834 69 3.43189 0.23942 3.32129 1.93459 219 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01000 5.30360 5.30360 1.46634 0.26236 0.37087 1.17162 70 2.53223 0.82091 1.07353 1.97555 220 c - - ) 1.38629 1.38629 1.38629 1.38629 0.00983 5.32063 5.32063 1.46634 0.26236 1.09861 0.40547 71 3.09837 0.83140 2.90867 0.76595 221 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01736 4.39648 5.32063 0.66450 0.72264 1.09861 0.40547 72 1.39637 3.19747 0.40617 3.09135 223 G - - : 1.38629 1.38629 1.38629 1.38629 0.61462 0.77837 * 1.10275 0.40340 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Tyr ACC bact-Tyr-r2-022416 STATES 277 NODES 76 CLEN 86 W 1348 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 21:26:33 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Tyr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Tyr-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Tyr-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Tyr-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6587 EFFN 6587.000000 CKSUM 2718432070 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.8123 0.71879 ECMLC 0.71970 -7.89426 0.92186 1600000 683560 0.001756 ECMGC 0.30927 -40.56637 -28.42132 1600000 17112 0.023375 ECMLI 0.58519 -9.83001 0.93390 1600000 652757 0.001838 ECMGI 0.31125 -37.53152 -25.52005 1600000 16816 0.023787 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1348 2907 -17.612 -18.857 -0.670 -1.429 IL 1 1 2 1 4 37 60 1353 2911 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 38 60 1353 2912 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 225 - A - - MR 3 2 3 5 3 37 60 1352 2911 -18.350 -0.000 -16.668 2.000 -13.978 -13.243 -13.310 D 4 2 3 5 3 34 57 1349 2908 -18.685 -13.863 -0.000 IR 5 5 3 5 3 37 60 1352 2911 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 224 - C - - MR 6 5 3 8 3 36 59 1351 2910 -18.350 -0.000 -16.668 -15.018 2.000 -16.177 -13.149 D 7 5 3 8 3 34 57 1349 2908 -18.685 -13.863 -0.000 IR 8 8 3 8 3 36 59 1351 2910 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 223 - C - - MR 9 8 3 11 3 35 58 1350 2909 -18.350 -0.000 -16.668 -15.018 2.000 -16.177 -13.149 D 10 8 3 11 3 34 57 1349 2908 -18.685 -0.000 -12.915 IR 11 11 3 11 3 32 54 1350 2909 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 222 - A - - MR 12 11 3 14 5 34 57 1349 2908 -3.588 -0.134 -17.475 -7.446 -18.579 1.550 -0.749 -1.150 -5.223 D 13 11 3 14 5 29 50 1346 2905 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 34 57 1349 2908 -10.879 -0.001 -14.390 -12.558 -13.663 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 220 G C - - MP 15 14 3 19 6 33 56 1348 2907 -18.580 -18.519 -0.007 -17.296 -17.576 -7.680 -16.334 -13.146 -18.026 -3.884 -17.984 -14.366 -3.050 -17.708 -14.500 3.896 -14.714 -5.056 -0.170 -14.811 -14.813 -16.876 ML 16 14 3 19 6 30 51 1345 2903 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 32 52 1343 2902 -12.581 -11.310 -5.210 -11.288 -0.043 -9.501 -6.761 1.988 -7.215 -5.837 D 18 14 3 19 6 28 49 1343 2902 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 31 52 1347 2905 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 31 53 1347 2905 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 219 G C - - MP 21 20 6 25 6 34 55 1346 2905 -18.573 -18.513 -0.000 -17.289 -17.569 -17.964 -14.760 -0.035 -14.994 -2.912 -4.221 -16.546 -1.617 -15.040 -14.384 3.820 -14.977 -1.991 -12.337 -15.778 -14.246 -2.923 ML 22 20 6 25 6 28 49 1342 2901 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 31 51 1342 2900 -12.551 -11.280 -1.594 -11.258 -0.586 -9.472 -4.846 0.665 1.232 -5.020 D 24 20 6 25 6 28 49 1343 2902 -14.946 -13.645 -0.078 -10.124 -10.141 -4.308 IL 25 25 5 25 6 29 50 1344 2903 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 29 50 1344 2903 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 218 A U - - MP 27 26 6 31 6 32 53 1344 2903 -18.583 -18.522 -0.003 -8.937 -17.578 -17.973 -13.891 -9.537 -1.944 3.212 -14.833 -14.932 -0.638 -10.682 -13.886 1.963 -14.327 -10.057 0.845 -14.097 -12.092 -2.932 ML 28 26 6 31 6 28 48 1339 2898 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 30 50 1339 2898 -11.985 -10.714 -6.623 -10.692 -0.020 -8.906 -3.859 -3.977 0.429 1.334 D 30 26 6 31 6 25 46 1335 2893 -10.730 -9.428 -5.226 -5.908 -5.925 -0.092 IL 31 31 5 31 6 29 50 1342 2901 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 29 50 1342 2901 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 217 G C - - MP 33 32 6 37 6 31 52 1342 2901 -3.945 -18.519 -0.112 -6.710 -17.575 -17.970 -13.393 -12.119 -13.193 -0.235 -13.560 -13.765 -0.327 -8.280 -13.509 3.706 -13.773 -7.165 -0.256 -13.142 -1.151 -12.124 ML 34 32 6 37 6 26 46 1335 2894 -10.590 -10.936 -5.650 -5.344 -10.785 -0.068 -5.271 1.966 -5.767 -4.370 MR 35 32 6 37 6 29 49 1338 2897 -11.985 -10.714 -6.623 -10.692 -0.020 -8.906 -6.130 1.981 -6.582 -5.234 D 36 32 6 37 6 25 46 1334 2893 -10.730 -9.428 -5.226 -5.908 -5.925 -0.092 IL 37 37 5 37 6 27 47 1336 2895 -1.001 -12.666 -10.584 -14.321 -15.097 -1.001 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 29 50 1341 2900 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 216 G C - - MP 39 38 6 43 6 31 52 1340 2899 -18.468 -7.227 -0.010 -17.184 -17.464 -17.859 -12.442 -9.174 -12.262 2.428 -13.319 -4.036 -0.080 -4.786 -12.691 3.066 -12.942 -7.413 0.014 -12.121 -2.453 -11.222 ML 40 38 6 43 6 29 50 1339 2897 -12.760 -13.107 -7.821 -0.008 -12.956 -10.486 1.995 -8.172 -7.437 -7.569 MR 41 38 6 43 6 28 48 1337 2896 -11.985 -10.714 -6.623 -10.692 -0.020 -8.906 -6.130 1.981 -6.582 -5.234 D 42 38 6 43 6 25 45 1334 2893 -18.708 -17.406 -13.203 -13.885 -8.483 -0.004 IL 43 43 5 43 6 29 49 1339 2898 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 30 50 1339 2898 -7.170 -0.016 -10.681 -8.849 -9.954 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 214 G C - - MP 45 44 6 49 6 29 50 1338 2897 -6.045 -18.407 -0.040 -7.427 -7.265 -17.859 -12.434 -9.420 -12.252 0.947 -13.370 -12.849 -0.041 -12.938 -12.689 3.476 -8.193 -2.352 0.592 -12.107 -2.028 -5.602 ML 46 44 6 49 6 28 49 1338 2896 -12.760 -13.107 -7.821 -0.008 -12.956 -10.486 -6.670 -8.438 1.993 -7.432 MR 47 44 6 49 6 27 47 1336 2895 -12.052 -10.781 -1.320 -10.759 -0.746 -8.972 -1.912 1.194 -4.149 0.474 D 48 44 6 49 6 25 45 1334 2893 -18.704 -17.402 -13.199 -13.881 -13.899 -0.000 IL 49 49 5 49 6 29 49 1338 2897 -1.329 -10.197 -0.736 -11.852 -12.628 -12.289 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 28 48 1337 2896 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 213 G C - - MP 51 50 6 55 4 27 48 1336 2895 -3.398 -17.889 -0.147 -8.929 -12.428 -11.065 -12.247 1.405 -13.375 -12.841 -1.719 -12.935 -12.682 3.420 -12.929 -0.786 0.707 -10.438 -2.965 -11.212 ML 52 50 6 55 4 27 48 1337 2895 -10.486 -0.177 -3.144 -9.398 1.829 -7.423 -1.203 -7.291 MR 53 50 6 55 4 26 46 1334 2893 -11.135 -10.164 -1.825 -0.481 -7.358 1.992 -7.828 -6.391 D 54 50 6 55 4 25 45 1334 2893 -14.126 -13.807 -0.046 -4.997 IL 55 55 5 55 4 26 46 1335 2894 -11.154 -11.837 -0.001 -14.323 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 27 47 1336 2894 -1.262 -0.780 -10.677 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - U - - - ML 57 56 6 59 3 25 45 1334 2893 -18.713 -0.000 -17.367 -4.830 -1.294 -3.599 1.797 D 58 56 6 59 3 24 44 1333 2892 -13.492 -0.006 -7.883 IL 59 59 3 59 3 25 46 1335 2893 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - g - - - ML 60 59 3 62 2 24 44 1333 2892 -5.433 -0.034 0.377 -0.970 0.535 -0.431 D 61 59 3 62 2 23 43 1332 2891 -8.445 -0.004 IL 62 62 3 62 2 25 45 1334 2892 -1.483 -0.639 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 64 176 23 43 1332 2891 [ BEGL 15 ] - - - - - - S 64 63 1 65 1 9 18 1301 2860 0.000 [ BIF 16 ] - - - - - - B 65 64 1 66 119 9 18 1301 2860 [ BEGL 17 ] - - - - - - S 66 65 1 67 4 0 6 1284 2842 -0.116 -8.016 -3.766 -16.766 [ MATP 18 ] 17 141 C G - - MP 67 66 1 71 6 2 9 1269 2828 -4.310 -18.412 -0.075 -17.188 -17.468 -17.863 -12.979 -4.363 -12.909 -2.869 -12.143 -13.660 3.215 -4.651 -12.916 2.623 -13.354 -4.757 -1.924 -7.928 -5.352 -11.602 ML 68 66 1 71 6 1 5 1333 2892 -11.483 -11.829 -6.543 -1.075 -0.965 -9.208 -5.519 -7.230 1.985 -6.269 MR 69 66 1 71 6 1 7 1373 2932 -16.234 -14.963 -5.280 -14.941 -0.038 -13.155 1.853 -10.027 -1.376 -9.845 D 70 66 1 71 6 0 1 1261 2820 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 71 71 5 71 6 1 7 1270 2829 -2.641 -0.815 -1.884 -13.103 -13.879 -13.539 0.000 0.000 0.000 0.000 IR 72 72 6 72 5 1 7 1269 2828 -1.125 -0.886 -13.882 -12.050 -13.155 0.000 0.000 0.000 0.000 [ MATP 19 ] 20 138 C G - - MP 73 72 6 77 6 2 8 1267 2826 -18.475 -18.415 -0.000 -17.191 -17.471 -17.866 -15.521 -5.716 -14.844 -5.009 -5.212 -14.992 3.916 -6.130 -14.946 -1.913 -15.069 -14.182 -0.927 -15.359 -5.709 -13.747 ML 74 72 6 77 6 1 4 1241 2799 -10.448 -10.794 -5.509 -0.040 -10.644 -8.174 1.972 -5.627 -5.051 -5.297 MR 75 72 6 77 6 1 6 1373 2932 -16.237 -14.966 -4.572 -14.945 -0.062 -13.158 -9.301 1.877 -1.625 -8.773 D 76 72 6 77 6 0 1 1245 2804 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 77 77 5 77 6 1 2 1273 2832 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 78 78 6 78 5 1 3 1280 2839 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 21 137 C G - - MP 79 78 6 83 6 2 6 1265 2824 -18.480 -3.459 -0.138 -17.196 -17.476 -17.871 -12.977 -5.188 -12.937 0.008 -1.990 -4.836 3.005 -12.516 -12.849 2.624 -13.327 -10.156 -1.811 -4.623 -2.648 -11.558 ML 80 78 6 83 6 1 4 1239 2797 -10.448 -10.794 -0.048 -5.203 -10.644 -8.174 -4.540 -6.118 1.970 -5.273 MR 81 78 6 83 6 1 5 1375 2934 -16.176 -14.905 -10.814 -14.883 -0.001 -13.097 -11.201 1.999 -11.923 -9.779 D 82 78 6 83 6 0 1 1218 2777 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 83 83 5 83 6 1 2 1286 2844 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 84 84 6 84 5 1 5 1371 2930 -10.900 -4.173 -14.411 -0.083 -13.685 0.000 0.000 0.000 0.000 [ MATP 21 ] 22 135 g a - - MP 85 84 6 89 4 2 4 1238 2797 -2.870 -4.090 -0.327 -7.160 2.075 -0.520 -10.163 -0.682 -4.472 -2.830 0.627 -10.458 2.170 0.595 -7.841 -0.038 -0.578 -10.305 -0.438 -1.561 ML 86 84 6 89 4 1 2 1208 2767 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 87 84 6 89 4 1 4 1374 2933 -15.293 -0.001 -12.189 -11.250 -12.573 2.000 -13.441 -10.970 D 88 84 6 89 4 0 1 1174 2733 -4.568 -4.250 -2.265 -0.520 IL 89 89 5 89 4 1 4 1375 2933 -1.623 -0.567 -11.579 -15.316 0.000 0.000 0.000 0.000 IR 90 90 6 90 3 1 3 1373 2932 -0.017 -8.703 -6.741 0.000 0.000 0.000 0.000 [ MATL 22 ] 25 - A - - - ML 91 90 6 93 3 1 2 41 81 -18.297 -0.000 -16.951 1.824 -1.970 -5.274 -2.493 D 92 90 6 93 3 0 1 40 80 -18.191 -0.000 -12.583 IL 93 93 3 93 3 1 1 42 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - G - - - ML 94 93 3 96 3 1 2 40 80 -18.727 -0.000 -17.381 -1.511 -5.361 1.823 -3.509 D 95 93 3 96 3 0 0 37 77 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 41 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - U - - - ML 97 96 3 99 3 1 2 39 79 -1.752 -0.508 -17.381 -0.926 -0.226 -0.728 1.010 D 98 96 3 99 3 0 0 32 71 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 2 41 80 -0.672 -1.425 -15.793 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - G - - - ML 100 99 3 102 3 1 2 11 29 -18.727 -0.000 -17.381 -4.308 -15.010 1.978 -6.726 D 101 99 3 102 3 0 0 18 36 -6.174 -1.687 -0.566 IL 102 102 3 102 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - G - - - ML 103 102 3 105 3 1 2 10 28 -18.727 -0.000 -17.381 -6.231 -13.431 1.995 -13.004 D 104 102 3 105 3 0 0 17 35 -6.174 -1.687 -0.566 IL 105 105 3 105 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 35 - C - - - ML 106 105 3 108 3 1 1 8 27 -18.727 -0.357 -2.190 -2.599 1.549 -2.688 -0.409 D 107 105 3 108 3 0 0 15 34 -6.174 -1.687 -0.566 IL 108 108 3 108 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - C - - - ML 109 108 3 111 3 1 2 7 25 -2.990 -0.194 -17.024 -3.724 1.027 -2.533 0.777 D 110 108 3 111 3 0 0 6 24 -17.956 -0.320 -2.330 IL 111 111 3 111 3 1 1 7 25 -10.076 -0.002 -12.777 0.000 0.000 0.000 0.000 [ MATL 29 ] 38 - A - - - ML 112 111 3 114 3 1 1 6 24 -18.663 -0.095 -3.972 1.384 -1.431 -1.519 -0.578 D 113 111 3 114 3 0 0 7 25 -15.626 -0.001 -10.018 IL 114 114 3 114 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 39 - A - - - ML 115 114 3 117 2 1 1 1 1 * 0.000 1.812 -13.168 -1.419 -3.126 D 116 114 3 117 2 0 0 0 0 * 0.000 IL 117 117 3 117 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 118 117 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 119 65 1 120 3 0 6 38 64 -18.727 -0.000 -17.381 IL 120 120 2 120 3 1 4 40 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 142 - G - - - ML 121 120 2 123 5 1 6 38 64 -7.384 -0.009 -17.475 -17.687 -18.579 0.574 -3.050 1.023 -1.482 D 122 120 2 123 5 0 2 36 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 123 123 3 123 5 1 5 38 64 -7.133 -0.016 -8.812 -10.644 -9.918 0.000 0.000 0.000 0.000 [ MATP 34 ] 144 163 g c - - MP 124 123 3 128 6 2 5 37 63 -18.588 -18.528 -0.074 -17.304 -17.584 -4.326 -12.559 -1.732 -12.381 -0.098 -5.596 -8.615 1.255 -2.298 -3.379 2.813 -13.059 1.728 0.695 -3.575 -6.570 -11.339 ML 125 123 3 128 6 1 2 35 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 3 128 6 1 2 35 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 3 128 6 0 1 32 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 2 36 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 2 36 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 145 162 C G - - MP 130 129 6 134 6 2 6 35 61 -18.515 -18.454 -0.000 -17.230 -17.510 -17.905 -15.570 -15.838 -14.890 -12.076 -13.244 -15.037 3.871 -14.157 -14.992 -0.377 -15.114 -4.126 -0.903 -15.408 -8.821 -13.795 ML 131 129 6 134 6 1 1 33 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 32 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 1 23 49 -18.287 -16.986 -12.783 -13.465 -0.002 -9.558 IL 134 134 5 134 6 1 1 34 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 146 161 g c - - MP 136 135 6 140 6 2 6 33 59 -18.515 -18.454 -0.000 -17.230 -17.510 -17.905 -12.479 -5.379 -12.298 2.231 -13.422 0.022 0.467 -6.153 -2.419 2.695 -12.982 -4.014 1.046 -6.155 -10.498 -3.955 ML 137 135 6 140 6 1 1 31 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 3 23 49 -15.676 -14.405 -10.314 -14.383 -0.002 -12.597 -8.943 -10.713 1.999 -9.700 D 139 135 6 140 6 0 0 28 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 32 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 32 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 147 160 G C - - MP 142 141 6 146 6 2 4 31 57 -3.977 -18.454 -0.095 -17.230 -17.510 -17.905 -16.488 -13.070 -19.022 -10.563 -18.090 -14.220 -1.252 -18.381 -14.442 3.952 -14.629 -3.797 -12.742 -4.844 -14.829 -18.238 ML 143 141 6 146 6 1 1 29 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 2 20 47 -15.676 -14.405 -10.314 -14.383 -0.002 -12.597 -10.559 1.999 -11.223 -9.224 D 145 141 6 146 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 3 30 56 -11.308 -11.570 -0.001 -13.226 -14.002 -13.662 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 30 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 149 159 A U - - MP 148 147 6 152 4 2 2 29 55 -4.088 -17.951 -0.090 -9.117 -7.134 -13.219 -14.706 3.456 -16.342 -17.482 -0.504 -8.340 -14.304 1.119 -14.952 -5.688 1.084 -15.882 -13.712 -13.323 ML 149 147 6 152 4 1 1 28 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 4 1 1 18 45 -13.702 -12.731 -10.598 -0.001 -11.571 -10.261 -13.053 2.000 D 151 147 6 152 4 0 0 26 53 -4.568 -4.250 -2.265 -0.520 IL 152 152 5 152 4 1 2 31 57 -1.001 -12.208 -1.000 -14.693 0.000 0.000 0.000 0.000 IR 153 153 6 153 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 152 - C - - - ML 154 153 6 156 3 1 1 12 31 -18.651 -0.127 -3.570 -7.199 1.837 -4.467 -1.417 D 155 153 6 156 3 0 0 12 30 -15.871 -11.384 -0.001 IL 156 156 3 156 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 153 - U - - - ML 157 156 3 159 3 1 2 11 30 -18.524 -0.000 -17.178 -15.649 -5.105 -17.099 1.989 D 158 156 3 159 3 0 0 11 29 -17.219 -0.719 -1.349 IL 159 159 3 159 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 154 - g - - - ML 160 159 3 162 3 1 1 10 28 -18.651 -0.000 -17.305 0.087 -0.464 0.324 -0.057 D 161 159 3 162 3 0 0 10 29 -15.871 -0.001 -10.262 IL 162 162 3 162 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 155 - u - - - ML 163 162 3 165 3 1 1 9 27 -18.727 -0.000 -17.381 -0.539 -0.173 -0.124 0.592 D 164 162 3 165 3 0 0 16 34 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 156 - a - - - ML 166 165 3 168 3 1 1 7 26 -18.727 -0.000 -17.381 0.250 0.012 -0.537 0.154 D 167 165 3 168 3 0 0 15 33 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 157 - A - - - ML 169 168 3 171 3 1 1 6 24 -18.727 -0.000 -17.381 1.717 -1.457 -3.055 -2.129 D 170 168 3 171 3 0 0 13 32 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 158 - A - - - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.794 -1.048 -8.991 -4.413 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 47 ] - - - - - - S 176 63 1 177 3 1 10 49 76 -18.727 -0.000 -17.381 IL 177 177 2 177 3 1 12 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 164 - U - - - ML 178 177 2 180 2 1 10 49 76 -2.296 -0.329 -3.206 0.787 -4.454 1.084 D 179 177 2 180 2 0 9 47 74 -8.445 -0.004 IL 180 180 3 180 2 1 10 49 76 -1.630 -0.563 0.000 0.000 0.000 0.000 [ BIF 49 ] - - - - - - B 181 180 3 182 214 0 9 47 74 [ BEGL 50 ] - - - - - - S 182 181 1 183 4 0 0 24 38 -0.100 -5.224 -6.450 -5.114 [ MATP 51 ] 167 186 G C - - MP 183 182 1 187 6 2 2 24 38 -18.488 -18.428 -0.003 -8.716 -17.484 -17.879 -13.007 -11.637 -12.832 -1.870 -13.494 -4.685 1.206 -13.361 -13.134 3.554 -13.382 -2.370 -1.293 -12.666 0.049 -11.780 ML 184 182 1 187 6 1 1 22 37 -14.244 -14.590 -9.305 -0.129 -14.440 -3.575 -9.409 1.998 -9.983 -8.224 MR 185 182 1 187 6 1 1 22 36 -13.562 -12.291 -1.799 -12.269 -0.491 -10.482 -7.890 1.994 -8.379 -6.875 D 186 182 1 187 6 0 0 17 32 -17.501 -16.199 -11.996 -12.678 -12.696 -0.001 IL 187 187 5 187 6 1 1 24 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 23 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 168 185 c g - - MP 189 188 6 193 6 2 2 22 36 -18.490 -18.429 -0.308 -17.206 -10.520 -2.383 -13.138 -10.327 -13.112 -1.055 -12.075 -13.945 2.981 -12.685 -12.994 2.570 -13.485 -5.771 0.728 -13.318 -6.735 -11.724 ML 190 188 6 193 6 1 1 21 36 -14.242 -14.588 -9.303 -0.003 -14.438 -11.968 1.496 -7.732 -8.400 0.228 MR 191 188 6 193 6 1 1 18 32 -13.080 -11.809 -7.717 -11.787 -0.009 -10.000 1.994 -7.965 -7.240 -7.377 D 192 188 6 193 6 0 0 17 32 -17.609 -16.307 -12.104 -12.786 -12.804 -0.001 IL 193 193 5 193 6 1 1 22 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 21 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 169 184 C G - - MP 195 194 6 199 4 2 2 20 35 -2.376 -6.048 -0.336 -16.032 -12.524 -12.228 -12.520 -2.023 -11.380 -3.666 3.585 -5.166 -4.607 -0.239 -12.890 -5.426 -1.634 -12.705 1.017 -1.358 ML 196 194 6 199 4 1 1 20 35 -0.007 -11.510 -8.076 -10.240 0.217 -5.923 -1.585 1.315 MR 197 194 6 199 4 1 1 16 30 -11.209 -0.124 -3.743 -7.166 -5.830 -2.157 -6.573 1.906 D 198 194 6 199 4 0 0 17 32 -3.508 -7.958 -0.225 -4.252 IL 199 199 5 199 4 1 1 19 34 -1.805 -0.622 -3.959 -15.949 0.000 0.000 0.000 0.000 IR 200 200 6 200 3 1 1 15 29 -2.105 -0.435 -5.156 0.000 0.000 0.000 0.000 [ MATL 54 ] 174 - U - - - ML 201 200 6 203 3 1 1 8 26 -18.701 -0.000 -17.355 -0.542 -4.498 -0.754 1.420 D 202 200 6 203 3 0 0 10 28 -14.359 -6.154 -0.020 IL 203 203 3 203 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 175 - U - - - ML 204 203 3 206 3 1 1 6 25 -18.701 -0.000 -17.355 -0.885 0.289 -5.355 1.145 D 205 203 3 206 3 0 0 8 27 -14.341 -4.313 -0.075 IL 206 206 3 206 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 176 - a - - - ML 207 206 3 209 3 1 1 5 9 -7.148 -0.685 -1.430 0.742 0.487 -2.595 -0.393 D 208 206 3 209 3 0 0 3 7 -14.268 -9.781 -0.002 IL 209 209 3 209 3 1 1 5 9 -6.297 -0.021 -8.997 0.000 0.000 0.000 0.000 [ MATL 57 ] 178 - a - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 0.309 0.049 -0.319 -0.113 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 [ BEGR 59 ] - - - - - - S 214 181 1 215 3 0 1 37 63 -18.727 -0.000 -17.381 IL 215 215 2 215 3 1 1 39 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 187 - U - - - ML 216 215 2 218 3 1 1 37 63 -7.106 -0.050 -5.223 -2.319 -0.873 -2.424 1.617 D 217 215 2 218 3 0 0 35 62 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 3 37 63 -6.362 -0.020 -9.062 0.000 0.000 0.000 0.000 [ MATL 61 ] 189 - U - - - ML 219 218 3 221 3 1 2 36 62 -18.688 -0.000 -17.342 -0.079 -0.373 -2.374 1.062 D 220 218 3 221 3 0 0 35 61 -14.925 -0.002 -9.317 IL 221 221 3 221 3 1 1 37 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 190 - C - - - ML 222 221 3 224 5 1 2 35 61 -17.660 -0.000 -17.475 -17.687 -18.579 -2.326 1.599 -1.332 -1.418 D 223 221 3 224 5 0 0 33 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 224 224 3 224 5 1 1 35 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 191 210 G C - - MP 225 224 3 229 6 2 2 34 60 -18.588 -18.528 -0.000 -17.304 -17.584 -17.979 -15.801 -13.140 -16.603 -0.974 -17.481 -14.564 0.631 -16.600 -14.463 3.751 -14.739 -1.409 -3.307 -14.883 -14.470 -15.338 ML 226 224 3 229 6 1 1 33 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 227 224 3 229 6 1 1 32 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 228 224 3 229 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 229 229 5 229 6 1 1 33 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 230 230 6 230 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 192 209 c g - - MP 231 230 6 235 6 2 2 32 58 -18.588 -18.528 -0.000 -13.461 -17.584 -17.979 -12.879 -10.007 -12.876 1.269 -11.765 -13.714 2.717 -6.779 -12.744 0.974 -13.253 1.515 0.845 -6.467 -1.856 -3.309 ML 232 230 6 235 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 233 230 6 235 6 1 1 31 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 234 230 6 235 6 0 0 29 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 235 235 5 235 6 1 1 31 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 236 236 6 236 5 1 1 31 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 193 208 a u - - MP 237 236 6 241 6 2 2 30 56 -18.588 -18.528 -0.000 -17.304 -17.584 -17.979 -12.945 -12.628 -12.936 2.933 -4.638 -13.766 0.979 -12.464 -12.804 1.430 -13.310 -3.614 1.737 -13.118 -2.065 -11.522 ML 238 236 6 241 6 1 1 31 58 -7.085 -7.431 -0.588 -1.840 -7.281 -4.811 1.225 -1.137 -0.879 -0.592 MR 239 236 6 241 6 1 1 29 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 6 241 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 29 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 194 207 G C - - MP 243 242 6 247 6 2 2 28 54 -7.419 -18.528 -0.030 -6.099 -17.584 -17.979 -16.255 -13.163 -17.712 0.426 -17.811 -14.413 -4.128 -17.443 -14.507 3.858 -14.732 -11.043 -3.307 -14.844 -14.725 -16.511 ML 244 242 6 247 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 28 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 23 50 -7.970 -8.233 -0.014 -9.888 -10.665 -10.325 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 28 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 196 206 G C - - MP 249 248 6 253 4 2 2 16 41 -17.797 -18.004 -0.000 -16.418 -16.401 -13.127 -18.344 -2.564 -18.084 -14.322 -12.426 -17.953 -14.489 3.974 -14.693 -3.076 -12.777 -14.777 -14.856 -17.268 ML 250 248 6 253 4 1 1 32 58 -0.013 -10.644 -7.210 -9.373 -9.284 -8.253 -10.473 1.998 MR 251 248 6 253 4 1 1 27 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 252 248 6 253 4 0 0 26 53 -4.568 -4.250 -2.265 -0.520 IL 253 253 5 253 4 1 1 31 57 -1.002 -10.276 -1.000 -12.761 0.000 0.000 0.000 0.000 IR 254 254 6 254 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 199 - U - - - ML 255 254 6 257 3 1 1 12 31 -18.727 -0.000 -17.381 -15.878 -5.189 -17.348 1.990 D 256 254 6 257 3 0 0 19 37 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 200 - U - - - ML 258 257 3 260 3 1 1 11 30 -18.727 -0.000 -17.381 -12.781 -6.743 -4.533 1.981 D 259 257 3 260 3 0 0 18 36 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 201 - C - - - ML 261 260 3 263 3 1 1 10 28 -18.727 -0.000 -17.381 -14.831 1.992 -15.478 -5.555 D 262 260 3 263 3 0 0 17 35 -6.174 -1.687 -0.566 IL 263 263 3 263 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 202 - G - - - ML 264 263 3 266 3 1 1 9 27 -18.727 -0.000 -17.381 -0.619 -14.837 1.744 -13.954 D 265 263 3 266 3 0 0 16 34 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 203 - A - - - ML 267 266 3 269 3 1 1 7 26 -18.727 -0.000 -17.381 1.990 -14.635 -13.955 -5.192 D 268 266 3 269 3 0 0 15 33 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 204 - A - - - ML 270 269 3 272 3 1 1 6 24 -18.727 -0.000 -17.381 1.574 -1.538 -1.078 -2.291 D 271 269 3 272 3 0 0 13 32 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 205 - U - - - ML 273 272 3 275 2 1 1 1 1 * 0.000 -3.935 -5.579 -12.870 1.968 D 274 272 3 275 2 0 0 0 0 * 0.000 IL 275 275 3 275 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 276 275 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Tyr ACC bact-Tyr-r2-022416 LENG 86 MAXL 1317 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 21:26:34 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Tyr-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Tyr-r2-022416.sto NSEQ 6587 EFFN 9.476175 CKSUM 2718432070 STATS LOCAL MSV -8.5996 0.71879 STATS LOCAL VITERBI -9.8843 0.71879 STATS LOCAL FORWARD -3.2984 0.71879 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54146 1.26379 1.28751 1.48108 1.38629 1.38629 1.38629 1.38629 0.01566 4.85755 4.85755 1.46634 0.26236 0.00000 * 1 2.98902 3.60120 0.14352 2.88116 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01978 4.85755 4.43856 1.46634 0.26236 1.09861 0.40547 2 1.90898 2.66950 0.34171 2.63215 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01572 4.85360 4.85360 1.46634 0.26236 0.85256 0.55568 3 0.97237 2.23180 1.02170 1.86758 3 a - - ( 1.38629 1.38629 1.38629 1.38629 0.01564 4.85905 4.85905 1.46634 0.26236 1.10512 0.40222 4 1.99055 2.43049 0.40707 2.20922 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.07363 2.78808 4.66213 0.23548 1.56156 1.10512 0.40222 5 1.32971 2.30077 0.65208 2.16888 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.07194 4.85736 2.78639 1.46634 0.26236 1.17472 0.36948 6 1.76398 2.34292 0.50082 2.06707 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03459 3.88708 4.30588 0.88743 0.53054 2.30000 0.10565 7 1.64341 2.61244 0.49193 2.10473 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.09936 2.46867 4.61642 0.18448 1.78104 0.30788 1.32804 8 2.97645 2.21638 3.23785 0.22218 13 U - - , 1.38629 1.38629 1.38629 1.38629 0.01572 4.85410 4.85410 1.46634 0.26236 0.67867 0.70783 9 1.15744 1.87283 1.22160 1.43858 14 a - - , 1.38629 1.38629 1.38629 1.38629 0.10059 3.61411 2.67718 0.74084 0.64763 1.09861 0.40547 10 2.39148 0.85691 1.09784 1.89418 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.06125 3.00809 4.60244 0.42381 1.06290 2.20634 0.11665 11 3.75021 0.15117 3.34600 2.50646 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01661 4.79920 4.79920 1.46634 0.26236 2.10541 0.12988 12 2.07663 0.95776 1.14067 1.76439 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.09087 4.80191 2.54274 1.46634 0.26236 2.35911 0.09927 13 1.33873 1.60329 1.23487 1.40358 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.13193 2.78353 2.78414 0.26483 1.45815 0.88168 0.53458 14 0.24835 2.47430 3.01015 2.44865 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01768 4.73715 4.73715 1.46634 0.26236 0.11630 2.20915 15 2.19707 3.44307 0.21644 2.96566 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 16 1.59809 1.55775 1.82967 0.85181 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.30368 1.36974 4.86232 0.99906 0.45922 1.09861 0.40547 17 3.70381 5.03305 0.04385 4.44327 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 18 4.11439 5.29124 0.03041 4.75867 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 19 2.37524 0.47376 2.84636 1.48590 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.21982 4.86232 1.66281 1.46634 0.26236 1.09861 0.40547 20 2.25179 0.84701 2.59663 0.93759 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.12627 2.21486 4.66159 0.16498 1.88331 0.28988 1.37974 21 0.62473 2.04424 2.09531 1.55077 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01669 4.82551 4.76384 1.46634 0.26236 0.30196 1.34466 22 0.21128 3.42932 2.27635 2.89338 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.32632 1.30679 4.86183 4.42570 0.01204 1.05792 0.42645 23 1.09828 1.58106 1.41878 1.51964 135 a - - > 1.38629 1.38629 1.38629 1.38629 0.09107 2.55367 4.68311 0.18816 1.76309 1.09861 0.40547 24 1.95994 1.17463 0.91871 1.88937 137 g - - > 1.38629 1.38629 1.38629 1.38629 0.01561 4.86080 4.86080 1.46634 0.26236 1.16198 0.37522 25 2.62937 3.04680 0.16963 3.31342 138 G - - > 1.38629 1.38629 1.38629 1.38629 0.04439 3.38165 4.66388 0.79914 0.59732 1.16198 0.37522 26 1.94724 1.19313 0.83135 2.13198 141 g - - > 1.38629 1.38629 1.38629 1.38629 0.01564 4.85912 4.85912 1.46634 0.26236 0.88150 0.53471 27 1.09656 2.53054 0.82111 1.92126 142 g - - , 1.38629 1.38629 1.38629 1.38629 0.02064 4.36622 4.86232 0.95931 0.48314 1.09861 0.40547 28 1.85277 1.79457 0.66217 1.82469 144 G - - < 1.38629 1.38629 1.38629 1.38629 0.05856 4.86232 3.01302 1.46634 0.26236 1.09861 0.40547 29 3.50654 0.24016 2.59233 2.21960 145 C - - < 1.38629 1.38629 1.38629 1.38629 0.01626 4.82003 4.82003 1.46634 0.26236 2.12291 0.12747 30 1.40243 1.79151 0.90141 1.70761 146 g - - < 1.38629 1.38629 1.38629 1.38629 0.01626 4.82003 4.82003 1.46634 0.26236 2.12291 0.12747 31 3.31400 3.51914 0.08789 4.00952 147 G - - < 1.38629 1.38629 1.38629 1.38629 0.07087 2.80762 4.82003 0.24876 1.51307 2.12291 0.12747 32 0.78276 2.13736 1.36299 1.77788 149 a - - < 1.38629 1.38629 1.38629 1.38629 0.06825 2.87470 4.65242 0.79401 0.60153 2.12291 0.12747 33 3.34157 0.18829 3.69302 2.19508 152 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08930 4.81856 2.55939 1.46634 0.26236 2.14451 0.12457 34 3.85087 3.46948 4.37985 0.06713 153 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01751 4.74677 4.74677 1.46634 0.26236 0.58067 0.81990 35 1.26058 1.68307 1.35223 1.30179 154 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01629 4.81856 4.81856 1.46634 0.26236 0.26690 1.45137 36 1.46337 1.55075 1.56877 1.05511 155 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 37 1.20439 1.48004 1.72633 1.22227 156 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 38 0.30938 2.26060 2.77138 2.31024 157 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 39 0.21683 2.21061 3.40188 2.95676 158 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 40 1.91038 1.47045 2.00209 0.71929 159 u - - > 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 41 4.15278 0.10746 3.42356 2.92676 160 C - - > 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 42 1.84996 0.93526 1.76119 1.27858 161 c - - > 1.38629 1.38629 1.38629 1.38629 0.05856 4.86232 3.01302 1.46634 0.26236 1.09861 0.40547 43 2.42225 2.71817 0.21797 3.19090 162 G - - > 1.38629 1.38629 1.38629 1.38629 0.01626 4.82003 4.82003 1.46634 0.26236 0.27360 1.42976 44 1.99001 0.89365 1.70227 1.30241 163 c - - > 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 45 2.43034 0.95103 3.08235 0.73439 164 u - - , 1.38629 1.38629 1.38629 1.38629 0.22936 1.75066 3.46426 0.42139 1.06751 1.09861 0.40547 46 2.09113 1.92811 0.50316 2.06819 167 G - - < 1.38629 1.38629 1.38629 1.38629 0.02828 4.83847 3.91357 1.46634 0.26236 1.49794 0.25307 47 2.31922 0.93255 1.17005 1.62075 168 c - - < 1.38629 1.38629 1.38629 1.38629 0.18676 4.82917 1.81791 1.46634 0.26236 0.88273 0.53384 48 2.26026 0.70739 1.94320 1.34900 169 c - - < 1.38629 1.38629 1.38629 1.38629 0.23136 1.62321 4.68009 0.31215 1.31630 0.13872 2.04385 49 1.57789 2.47788 1.89485 0.58102 174 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02157 4.85316 4.30268 1.46634 0.26236 1.43013 0.27349 50 1.76706 1.25531 2.83271 0.72294 175 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01582 4.84741 4.84741 1.46634 0.26236 1.50162 0.25202 51 1.00093 1.23289 2.31332 1.41849 176 a - - _ 1.38629 1.38629 1.38629 1.38629 0.27476 4.29216 1.48470 0.91165 0.51393 1.07810 0.41588 52 1.18390 1.49355 1.64582 1.28559 178 a - - _ 1.38629 1.38629 1.38629 1.38629 0.39733 2.22362 1.51562 0.33460 1.25745 0.10655 2.29192 53 1.82634 2.08574 0.55099 1.97756 184 G - - > 1.38629 1.38629 1.38629 1.38629 0.04881 4.67338 3.26231 1.46634 0.26236 0.22598 1.59819 54 1.78143 1.22925 0.86356 2.14188 185 g - - > 1.38629 1.38629 1.38629 1.38629 0.01638 4.81311 4.81311 1.46634 0.26236 2.00709 0.14431 55 2.55174 0.55241 1.69709 1.81230 186 C - - > 1.38629 1.38629 1.38629 1.38629 0.01635 4.81503 4.81503 1.46634 0.26236 0.25218 1.50105 56 2.31443 1.92562 2.68336 0.37533 187 U - - , 1.38629 1.38629 1.38629 1.38629 0.04469 4.28617 3.50832 0.89614 0.52449 1.09861 0.40547 57 1.36535 1.60691 2.26744 0.81956 189 u - - , 1.38629 1.38629 1.38629 1.38629 0.01594 4.83986 4.83986 1.46634 0.26236 0.41634 1.07720 58 2.29749 0.44943 2.35036 1.79480 190 C - - , 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 59 2.26927 2.38114 0.28627 2.93551 191 G - - < 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 60 1.81424 1.06359 1.32486 1.48729 192 c - - < 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 61 1.16382 1.57242 1.49167 1.36582 193 a - - < 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 62 2.37128 3.88094 0.14922 3.70372 194 G - - < 1.38629 1.38629 1.38629 1.38629 0.02053 4.37529 4.86232 0.96674 0.47855 1.09861 0.40547 63 3.40593 4.58802 0.05779 4.35831 196 G - - < 1.38629 1.38629 1.38629 1.38629 0.02797 3.91975 4.86232 0.97312 0.47466 1.09861 0.40547 64 3.99859 3.58709 4.52809 0.05850 199 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 65 3.42153 3.28003 3.63051 0.10180 200 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 66 4.58561 0.04027 4.97150 3.80130 201 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 67 1.88847 3.99242 0.21751 3.66028 202 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 68 0.03497 4.70858 4.43659 4.30414 203 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 69 0.43488 2.21469 2.05096 2.16405 204 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 70 3.17610 3.26370 3.96510 0.10421 205 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02797 4.86232 3.91975 1.46634 0.26236 1.09861 0.40547 71 4.77073 0.06602 4.63105 3.08641 206 C - - > 1.38629 1.38629 1.38629 1.38629 0.01578 4.85013 4.85013 1.46634 0.26236 0.57619 0.82562 72 3.87378 0.16733 3.72638 2.21438 207 C - - > 1.38629 1.38629 1.38629 1.38629 0.01566 4.86232 4.85349 1.46634 0.26236 1.09861 0.40547 73 1.52227 1.59911 1.42339 1.08231 208 u - - > 1.38629 1.38629 1.38629 1.38629 0.01559 4.86225 4.86225 1.46634 0.26236 1.09274 0.40842 74 1.70424 1.79189 0.96158 1.31246 209 g - - > 1.38629 1.38629 1.38629 1.38629 0.01559 4.86232 4.86232 1.46634 0.26236 1.09861 0.40547 75 3.17286 0.33819 2.28707 1.94146 210 C - - > 1.38629 1.38629 1.38629 1.38629 0.08334 4.15938 2.74349 0.80416 0.59324 1.09861 0.40547 76 2.28988 0.57182 2.40645 1.41022 213 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02506 4.80404 4.10110 1.46634 0.26236 2.17611 0.12045 77 2.29060 0.56468 2.14677 1.54461 214 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02236 4.29063 4.77765 0.95092 0.48839 2.41321 0.09379 78 2.40491 0.70870 2.14498 1.20273 216 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01665 4.79690 4.79690 1.46634 0.26236 0.22307 1.60972 79 2.52857 0.45401 2.17401 1.76360 217 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01561 4.86049 4.86049 1.46634 0.26236 0.97780 0.47182 80 2.04649 1.10596 2.01557 0.89974 218 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01953 4.86217 4.45615 1.46634 0.26236 1.10512 0.40222 81 2.91397 0.36077 2.51659 1.78459 219 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01565 4.85829 4.85829 1.46634 0.26236 0.83959 0.56544 82 2.95535 0.16534 3.44407 2.68236 220 C - - ) 1.38629 1.38629 1.38629 1.38629 0.08828 2.56703 4.86232 0.19056 1.75157 1.09861 0.40547 83 0.41509 1.96662 2.09153 2.57318 222 A - - : 1.38629 1.38629 1.38629 1.38629 0.11415 4.58527 2.32610 1.46634 0.26236 1.09861 0.40547 84 4.16939 0.05591 4.64421 3.53012 223 C - - : 1.38629 1.38629 1.38629 1.38629 0.02261 4.49373 4.49373 1.46634 0.26236 2.44886 0.09035 85 4.16939 0.05591 4.64421 3.53012 224 C - - : 1.38629 1.38629 1.38629 1.38629 0.02261 4.49373 4.49373 1.46634 0.26236 2.44886 0.09035 86 0.04559 4.40783 4.04316 4.21002 225 A - - : 1.38629 1.38629 1.38629 1.38629 0.01137 4.48249 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME bact-Val ACC bact-Val-r2-022416 STATES 242 NODES 65 CLEN 76 W 1117 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 21:44:39 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Val-r2-022416.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.5/cmcalibrate_files/bact-Val-r2.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14967 EFFN 14967.000000 CKSUM 1131101639 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.1815 0.71887 ECMLC 0.57768 -9.40343 1.23456 1600000 559864 0.002143 ECMGC 0.30856 -30.51719 -17.28529 1600000 23725 0.016860 ECMLI 0.55351 -9.43508 1.56093 1600000 527826 0.002273 ECMGI 0.30339 -29.35558 -15.95708 1600000 23304 0.017164 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 1117 2381 -18.795 -20.041 -0.785 -1.252 IL 1 1 2 1 4 18 32 1120 2384 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 33 1121 2384 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 249 - A - - MR 3 2 3 5 3 24 43 1120 2383 -19.419 -0.000 -17.736 2.000 -15.043 -14.320 -14.374 D 4 2 3 5 3 15 30 1116 2379 -20.046 -15.223 -0.000 IR 5 5 3 5 3 18 33 1120 2383 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 248 - C - - MR 6 5 3 8 3 24 42 1119 2382 -19.419 -0.000 -17.736 -16.210 2.000 -17.496 -14.251 D 7 5 3 8 3 15 30 1116 2379 -20.046 -15.223 -0.000 IR 8 8 3 8 3 18 33 1119 2382 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 247 - C - - MR 9 8 3 11 3 23 41 1118 2381 -19.419 -0.000 -17.736 -16.210 2.000 -17.496 -14.251 D 10 8 3 11 3 15 30 1116 2379 -20.046 -0.110 -3.772 IR 11 11 3 11 3 17 31 1117 2380 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 246 - A - - MR 12 11 3 14 5 22 40 1117 2380 -5.562 -0.212 -18.614 -3.117 -19.718 1.751 -5.336 -2.094 -1.413 D 13 11 3 14 5 14 27 1102 2366 -14.402 -9.757 -9.660 -13.459 -0.004 IR 14 14 3 14 5 20 41 1117 2380 -10.047 -0.002 -13.558 -11.726 -12.832 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 244 G C - - MP 15 14 3 19 6 24 41 1116 2379 -19.550 -19.489 -0.022 -6.029 -18.546 -18.941 -14.899 -13.224 -14.863 -0.039 -3.928 -14.928 -3.852 -15.433 -13.053 3.805 -3.194 -0.906 -1.873 -14.512 -13.070 -13.785 ML 16 14 3 19 6 17 31 1113 2376 -6.982 -7.328 -2.043 -0.519 -7.178 -4.708 -0.180 -1.113 0.972 -0.529 MR 17 14 3 19 6 20 36 1115 2378 -18.021 -16.750 -0.095 -16.728 -3.971 -14.941 -12.588 1.997 -13.147 -6.877 D 18 14 3 19 6 14 27 1102 2366 -18.769 -17.468 -13.265 -13.947 -13.964 -0.000 IL 19 19 5 19 6 17 31 1115 2378 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 17 31 1115 2378 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 243 G C - - MP 21 20 6 25 6 23 39 1114 2377 -19.696 -19.636 -0.008 -18.412 -7.450 -19.087 -13.683 -8.138 -13.503 -1.219 -13.121 -10.491 1.234 -12.952 -8.059 3.492 0.786 -5.686 -2.204 -13.356 -11.701 -12.467 ML 22 20 6 25 6 20 37 1112 2375 -14.405 -14.751 -8.065 -0.006 -14.601 -12.130 -8.225 -9.997 1.998 -8.985 MR 23 20 6 25 6 17 32 1109 2372 -14.054 -12.783 -4.866 -12.761 -0.076 -5.918 -1.678 1.552 -3.557 -0.578 D 24 20 6 25 6 14 27 1102 2366 -18.769 -17.468 -13.265 -13.947 -13.964 -0.000 IL 25 25 5 25 6 17 31 1113 2376 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 17 31 1113 2376 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 242 G C - - MP 27 26 6 31 6 24 38 1112 2375 -19.688 -19.628 -0.000 -18.404 -18.684 -19.079 -8.425 -12.291 -13.471 2.009 -14.600 -10.694 -0.083 -14.161 -13.909 3.149 -14.155 0.615 -0.920 -13.325 -3.394 -12.436 ML 28 26 6 31 6 20 36 1111 2374 -14.402 -14.748 -0.003 -9.157 -14.598 -12.127 1.998 -9.695 -8.931 -9.040 MR 29 26 6 31 6 18 32 1108 2371 -14.829 -13.558 -9.466 -13.536 -0.003 -11.750 -3.349 1.906 -2.770 -7.142 D 30 26 6 31 6 14 27 1102 2366 -18.775 -17.473 -13.270 -13.952 -13.970 -0.000 IL 31 31 5 31 6 17 31 1111 2374 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 17 31 1111 2374 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 241 c g - - MP 33 32 6 37 6 23 36 1110 2373 -19.708 -6.554 -0.015 -18.424 -18.704 -19.099 -10.786 -13.705 -11.118 0.678 -10.909 -14.848 2.866 -10.649 -6.294 1.103 -14.376 -1.294 2.072 -14.187 -1.586 -11.125 ML 34 32 6 37 6 16 31 1108 2371 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 17 31 1107 2370 -14.829 -13.558 -9.466 -13.536 -0.058 -4.728 1.050 -8.456 0.944 -8.352 D 36 32 6 37 6 14 27 1102 2366 -18.775 -17.473 -13.270 -13.952 -13.970 -0.000 IL 37 37 5 37 6 17 31 1109 2372 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 20 35 1109 2372 -9.044 -0.004 -12.555 -10.723 -11.829 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 239 g c - - MP 39 38 6 43 6 21 34 1108 2371 -19.708 -19.648 -0.001 -18.424 -11.232 -19.099 -11.445 -2.312 -13.540 0.667 -6.677 -11.725 1.858 -0.005 -6.383 2.863 -6.348 -0.478 0.568 -8.981 -3.729 -12.466 ML 40 38 6 43 6 16 30 1106 2369 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 18 31 1106 2369 -14.774 -13.503 -1.090 -13.481 -0.917 -11.694 -8.492 1.919 -8.900 -2.223 D 42 38 6 43 6 14 27 1102 2366 -18.796 -17.494 -1.911 -13.973 -13.991 -0.446 IL 43 43 5 43 6 17 31 1107 2370 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 17 31 1107 2370 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 238 c g - - MP 45 44 6 49 6 19 32 1106 2369 -3.947 -19.668 -0.097 -18.444 -18.724 -19.119 -14.019 -7.036 -14.016 1.683 -11.183 -14.854 2.156 -8.042 -13.883 1.654 -14.393 -1.212 1.776 -4.621 0.320 -5.260 ML 46 44 6 49 6 16 30 1104 2368 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 16 29 1103 2367 -13.951 -12.680 -7.656 -12.658 -0.008 -10.871 -2.391 -2.013 -6.248 1.827 D 48 44 6 49 6 14 27 1101 2364 -18.350 -17.048 -9.571 -13.528 -13.545 -0.002 IL 49 49 5 49 6 16 29 1104 2368 -12.550 -12.812 -0.421 -14.468 -15.244 -1.984 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 17 30 1105 2368 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 237 U A - - MP 51 50 6 55 4 17 30 1104 2367 -6.322 -19.142 -0.018 -17.556 -13.753 -12.411 -13.580 1.123 -14.592 -14.192 -2.108 -14.219 -6.433 1.723 -10.436 0.316 3.054 -0.480 -6.600 -12.531 ML 52 50 6 55 4 16 29 1103 2366 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 15 28 1102 2366 -11.972 -11.001 -1.247 -0.791 1.826 -2.020 -5.982 -2.373 D 54 50 6 55 4 14 27 1101 2364 -14.531 -14.212 -4.694 -0.057 IL 55 55 5 55 4 16 29 1103 2366 -9.487 -10.170 -0.003 -12.655 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 16 29 1104 2367 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - - - ML 57 56 6 59 3 15 28 1102 2365 -19.850 -0.000 -18.504 -17.124 -7.029 -18.689 1.997 D 58 56 6 59 3 14 27 1101 2364 -16.727 -0.001 -11.119 IL 59 59 3 59 3 15 28 1103 2366 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 60 59 3 62 2 14 27 1101 2364 -20.567 -0.000 1.939 -15.403 -2.690 -6.663 D 61 59 3 62 2 13 26 1100 2363 -8.445 -0.004 IL 62 62 3 62 2 14 27 1101 2365 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 133 64 13 26 1100 2363 [ BEGR 46 ] - - - - - - S 64 63 1 65 3 0 4 1062 2325 -19.911 -0.161 -3.243 IL 65 65 2 65 3 1 6 1063 2326 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 98 - a - - - ML 66 65 2 68 3 1 6 1058 2321 -19.750 -0.074 -4.325 0.918 -2.626 0.843 -2.701 D 67 65 2 68 3 0 3 1088 2351 -18.087 -13.600 -0.000 IL 68 68 3 68 3 1 6 1060 2323 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 99 - G - - - ML 69 68 3 71 3 1 6 1055 2318 -3.494 -0.176 -5.269 -1.048 -3.816 1.625 -1.471 D 70 68 3 71 3 0 3 1088 2351 -1.815 -6.297 -0.508 IL 71 71 3 71 3 1 5 1076 2339 -0.352 -3.023 -3.421 0.000 0.000 0.000 0.000 [ MATL 49 ] 121 - G - - - ML 72 71 3 74 3 2 9 1049 2313 -19.627 -0.000 -18.281 -4.263 -6.716 1.935 -3.116 D 73 71 3 74 3 0 3 1093 2356 -18.845 -14.358 -0.000 IL 74 74 3 74 3 1 6 1055 2318 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 122 - U - - - ML 75 74 3 77 3 2 8 1048 2312 -19.627 -0.000 -18.281 -1.107 -3.508 -2.885 1.728 D 76 74 3 77 3 0 3 1093 2356 -18.845 -1.290 -0.758 IL 77 77 3 77 3 1 5 1058 2321 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 123 - C - - - ML 78 77 3 80 5 1 7 1047 2311 -18.683 -0.000 -18.498 -18.710 -19.602 -1.970 1.769 -3.155 -2.155 D 79 77 3 80 5 0 3 1112 2376 -16.043 -11.887 -15.304 -0.001 -13.592 IL 80 80 3 80 5 1 2 1052 2315 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 124 236 g c - - MP 81 80 3 85 6 2 6 1046 2310 -19.611 -19.550 -0.001 -11.389 -18.606 -19.001 -15.037 -3.566 -15.046 2.428 -16.555 -16.304 -1.472 -15.399 -14.993 2.766 -15.480 1.717 -3.572 -15.381 -13.688 -13.830 ML 82 80 3 85 6 1 1 1050 2314 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 4 1112 2376 -17.939 -16.668 -12.577 -16.646 -0.000 -14.860 -13.967 -12.579 -15.554 2.000 D 84 80 3 85 6 0 0 1081 2345 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 1053 2316 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 2 1055 2318 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 125 235 c g - - MP 87 86 6 91 6 2 7 1044 2308 -19.610 -19.549 -0.000 -18.326 -18.606 -19.001 -13.896 -1.744 -13.893 -0.315 -8.991 -9.207 2.590 -13.431 -11.329 1.179 -9.492 1.969 0.595 -11.041 0.199 -5.047 ML 88 86 6 91 6 1 2 1045 2308 -9.275 -9.621 -0.110 -4.029 -9.471 -7.000 -3.666 1.898 -4.404 -2.766 MR 89 86 6 91 6 1 4 1111 2375 -17.939 -16.668 -12.577 -16.646 -0.000 -14.860 -11.195 -12.948 2.000 -11.939 D 90 86 6 91 6 0 0 1084 2347 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 1052 2315 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 1054 2317 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 126 234 u a - - MP 93 92 6 97 6 2 7 1042 2306 -19.611 -19.550 -0.000 -15.625 -18.606 -19.001 -13.882 -6.763 -13.866 1.040 -12.842 -5.085 2.031 -13.461 -13.769 1.688 -14.264 0.358 2.208 -14.015 -0.553 -6.301 ML 94 92 6 97 6 1 1 1054 2318 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 3 1110 2374 -17.939 -16.668 -12.577 -16.646 -0.000 -14.860 2.000 -12.600 -11.851 -11.933 D 96 92 6 97 6 0 0 1087 2350 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 1051 2314 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 1052 2315 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 127 233 G C - - MP 99 98 6 103 6 2 5 1040 2304 -19.611 -19.550 -0.000 -18.326 -18.606 -19.001 -17.018 -8.963 -18.071 1.063 -18.881 -15.555 -4.033 -17.960 -11.110 3.780 -15.776 -8.496 -3.198 -15.935 -15.773 -16.783 ML 100 98 6 103 6 1 1 1055 2318 -6.654 -7.000 -1.714 -0.688 -6.850 -4.379 0.081 -0.800 0.616 -0.260 MR 101 98 6 103 6 1 2 1109 2373 -17.939 -16.668 -12.577 -16.646 -0.000 -14.860 -13.394 2.000 -14.359 -11.690 D 102 98 6 103 6 0 0 1091 2354 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 1049 2313 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 1051 2314 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 128 232 G C - - MP 105 104 6 109 4 2 3 1038 2302 -18.841 -5.042 -0.044 -17.462 -17.558 -8.768 -19.960 -3.277 -19.182 -15.325 -13.470 -19.382 -5.232 3.955 -4.866 -4.720 -13.836 -1.812 -15.924 -19.093 ML 106 104 6 109 4 1 1 1055 2319 -4.069 -4.252 -0.393 -2.981 0.081 -0.800 0.616 -0.260 MR 107 104 6 109 4 1 1 1108 2372 -15.965 -14.994 -12.861 -0.000 -13.394 2.000 -14.359 -11.690 D 108 104 6 109 4 0 0 1095 2358 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 1064 2327 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 1097 2361 -0.493 -3.667 -2.246 0.000 0.000 0.000 0.000 [ MATL 57 ] 129 - U - - - ML 111 110 6 113 3 1 1 1033 2296 -19.717 -0.586 -1.583 -5.719 -12.892 -3.423 1.959 D 112 110 6 113 3 0 0 1107 2371 -18.335 -13.848 -0.000 IL 113 113 3 113 3 1 1 944 2207 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 130 - U - - - ML 114 113 3 116 3 1 3 202 1466 -19.132 -0.000 -17.786 -16.188 -14.942 -4.367 1.982 D 115 113 3 116 3 0 0 1107 2371 -0.070 -15.582 -4.396 IL 116 116 3 116 3 1 4 1111 2374 -0.021 -6.110 -22.083 0.000 0.000 0.000 0.000 [ MATL 59 ] 223 - C - - - ML 117 116 3 119 3 1 2 9 28 -19.882 -0.000 -18.536 -4.390 1.979 -11.633 -6.614 D 118 116 3 119 3 0 0 10 29 -15.673 -11.187 -0.001 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 224 - G - - - ML 120 119 3 122 3 1 1 8 26 -19.882 -0.000 -18.536 0.372 -11.742 1.436 -11.722 D 121 119 3 122 3 0 0 9 27 -15.673 -0.001 -10.065 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 225 - A - - - ML 123 122 3 125 3 1 1 6 25 -19.911 -0.000 -14.874 1.991 -11.816 -6.537 -6.102 D 124 122 3 125 3 0 0 14 33 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 226 - g - - - ML 126 125 3 128 3 1 1 5 23 -19.911 -0.000 -18.565 0.067 -4.528 0.831 0.176 D 127 125 3 128 3 0 0 13 31 -7.259 -0.567 -1.651 IL 128 128 3 128 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 227 - U - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 -2.958 0.780 -2.734 1.002 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 [ BEGL 15 ] - - - - - - S 133 63 1 134 1 3 13 306 661 0.000 [ BIF 16 ] - - - - - - B 134 133 1 135 185 3 13 306 661 [ BEGL 17 ] - - - - - - S 135 134 1 136 4 0 5 30 47 -0.001 -17.902 -10.143 -17.949 [ MATP 18 ] 12 35 G C - - MP 136 135 1 140 6 2 6 30 47 -7.435 -7.098 -0.023 -11.293 -8.663 -19.161 -17.313 -7.081 -18.572 -1.138 -19.138 -15.653 -13.627 -18.398 -15.681 3.845 -15.925 0.081 -3.232 -16.062 -15.991 -17.311 ML 137 135 1 140 6 1 2 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 1 140 6 1 2 26 44 -11.114 -9.843 -5.751 -9.821 -0.037 -8.034 -5.249 1.966 -5.747 -4.348 D 139 135 1 140 6 0 0 26 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 5 29 46 -9.117 -9.380 -0.006 -11.035 -11.811 -11.472 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 5 29 46 -8.568 -0.006 -12.079 -10.247 -11.353 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 33 C G - - MP 142 141 6 146 6 2 9 28 45 -19.766 -19.706 -0.000 -18.482 -15.761 -19.157 -16.825 -17.107 -16.142 -2.512 -2.244 -4.826 3.915 -15.408 -16.246 -2.145 -16.366 -15.511 -1.921 -16.659 -8.483 -15.048 ML 143 141 6 146 6 1 1 25 42 -9.503 -9.849 -4.563 -4.258 -9.699 -0.149 -4.005 1.919 -4.692 -3.083 MR 144 141 6 146 6 1 1 25 43 -12.979 -11.708 -7.617 -11.686 -1.902 -0.461 -1.800 -1.813 -1.921 1.662 D 145 141 6 146 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 2 28 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 2 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 32 U A - - MP 148 147 6 152 6 2 7 26 43 -19.766 -19.706 -0.000 -18.482 -18.762 -19.157 -16.794 -5.003 -16.140 -4.852 -3.657 -16.314 -2.539 -15.420 -16.228 -1.370 -16.363 -15.168 3.920 -2.674 -12.224 -15.037 ML 149 147 6 152 6 1 2 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 3 25 43 -11.138 -9.867 -4.843 -0.108 -4.979 -8.059 0.159 -0.147 -0.164 0.121 D 151 147 6 152 6 0 0 22 40 -15.362 -14.060 -9.857 -10.539 -10.557 -0.004 IL 152 152 5 152 6 1 2 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 2 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 31 C G - - MP 154 153 6 158 4 2 5 24 41 -18.996 -19.203 -0.000 -17.617 -1.940 -17.107 -7.227 -13.344 -14.493 -16.287 3.896 -4.766 -16.246 -13.316 -16.366 -15.512 -7.000 -16.659 -0.314 -15.048 ML 155 153 6 158 4 1 2 24 42 -7.676 -7.858 -0.029 -6.588 -5.249 1.966 -5.747 -4.348 MR 156 153 6 158 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 157 153 6 158 4 0 0 22 40 -10.785 -10.466 -0.230 -2.777 IL 158 158 5 158 4 1 2 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 159 159 6 159 3 1 2 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - A - - - ML 160 159 6 162 3 1 3 22 39 -19.910 -0.000 -18.564 1.956 -6.406 -3.990 -4.434 D 161 159 6 162 3 0 0 21 39 -10.123 -0.066 -4.514 IL 162 162 3 162 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - G - - - ML 163 162 3 165 3 1 2 21 38 -19.911 -0.000 -18.565 -1.338 -3.128 1.749 -2.958 D 164 162 3 165 3 0 0 20 39 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 166 165 3 168 3 1 1 20 37 -19.911 -0.295 -2.433 -1.973 0.339 -4.275 1.280 D 167 165 3 168 3 0 0 19 38 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - - - ML 169 168 3 171 3 1 1 19 37 -3.257 -0.159 -18.269 -2.660 -2.282 -3.393 1.824 D 170 168 3 171 3 0 0 12 27 -18.897 -0.000 -13.289 IL 171 171 3 171 3 1 1 20 38 -1.533 -0.612 -14.364 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - G - - - ML 172 171 3 174 3 1 1 12 27 -19.911 -0.005 -8.194 -3.378 -16.118 1.939 -3.871 D 173 171 3 174 3 0 0 16 34 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - G - - - ML 175 174 3 177 3 1 1 11 25 -19.906 -0.000 -18.560 -3.874 -16.203 1.975 -15.175 D 176 174 3 177 3 0 0 10 29 -13.146 -8.659 -0.004 IL 177 177 3 177 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - U - - - ML 178 177 3 180 3 1 1 10 20 -1.491 -0.639 -8.854 -1.302 -2.290 0.443 1.022 D 179 177 3 180 3 0 0 5 14 -13.146 -8.659 -0.004 IL 180 180 3 180 3 1 1 10 19 -2.825 -0.219 -16.027 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.939 -6.504 -2.801 -6.450 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 185 134 1 186 3 0 0 290 644 -19.911 -0.000 -11.926 IL 186 186 2 186 3 1 1 290 644 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - A - - - ML 187 186 2 189 5 1 3 290 644 -18.843 -0.161 -3.243 -18.871 -19.763 1.154 -7.273 0.676 -2.552 D 188 186 2 189 5 0 0 254 609 -7.597 -3.441 -6.859 -5.234 -0.205 IL 189 189 3 189 5 1 1 286 641 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 97 C G - - MP 190 189 3 194 6 2 3 275 630 -19.610 -19.550 -0.019 -18.326 -6.262 -19.001 -6.504 -13.607 -10.132 -3.875 -8.325 -14.751 3.188 -8.320 -5.021 -1.947 -13.219 -0.387 2.413 -7.190 -1.274 -10.845 ML 191 189 3 194 6 1 1 321 675 -17.404 -17.750 -12.464 -0.000 -17.600 -15.129 -13.967 -12.579 -15.554 2.000 MR 192 189 3 194 6 1 1 264 619 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 3 194 6 0 0 239 593 -12.046 -10.745 -6.542 -7.224 -7.241 -0.036 IL 194 194 5 194 6 1 1 282 637 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 277 631 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 96 C G - - MP 196 195 6 200 6 2 2 273 628 -19.591 -19.531 -0.018 -18.307 -18.587 -6.347 -4.807 -13.673 -13.960 1.141 -11.349 -14.789 3.094 -13.474 -13.821 -1.848 -8.240 -9.528 2.295 -14.147 -4.995 -12.541 ML 197 195 6 200 6 1 1 320 674 -17.404 -17.750 -12.464 -0.000 -17.600 -15.129 2.000 -12.600 -11.851 -11.933 MR 198 195 6 200 6 1 1 161 516 -14.765 -13.494 -9.403 -13.473 -0.003 -11.686 -8.055 -9.828 1.997 -8.816 D 199 195 6 200 6 0 0 225 580 -12.046 -10.745 -6.542 -7.224 -7.241 -0.036 IL 200 200 5 200 6 1 1 281 636 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 275 629 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 39 95 u a - - MP 202 201 6 206 6 2 2 272 626 -3.620 -19.513 -0.122 -18.289 -18.569 -18.964 -4.789 -13.584 -9.747 1.700 -12.752 -14.727 2.250 -13.404 -13.743 1.051 -14.256 -6.752 2.550 -14.068 -5.793 -12.463 ML 203 201 6 206 6 1 1 319 673 -0.001 -17.750 -12.464 -12.159 -17.600 -15.129 -11.195 -12.948 2.000 -11.939 MR 204 201 6 206 6 1 1 122 476 -14.765 -13.494 -9.403 -13.473 -0.003 -11.686 -9.390 1.998 -9.963 -8.207 D 205 201 6 206 6 0 0 87 442 -17.305 -16.004 -11.801 -0.038 -12.500 -5.295 IL 206 206 5 206 6 1 1 318 672 -0.075 -5.620 -16.521 -20.259 -21.035 -5.046 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 97 207 -11.831 -0.001 -15.342 -13.510 -14.616 0.000 0.000 0.000 0.000 [ MATP 36 ] 69 93 C G - - MP 208 207 6 212 6 2 2 96 206 -19.574 -2.863 -0.244 -18.289 -18.569 -5.790 -13.891 -13.404 -13.861 -1.617 -12.894 -11.725 3.204 -13.496 -5.828 2.349 -11.711 -0.495 -1.082 -13.995 -2.596 -12.491 ML 209 207 6 212 6 1 1 49 158 -14.126 -14.472 -0.004 -8.881 -14.322 -11.851 1.998 -9.437 -8.674 -8.786 MR 210 207 6 212 6 1 1 52 162 -14.765 -13.494 -9.403 -13.473 -0.003 -11.686 -8.055 -9.828 1.997 -8.816 D 211 207 6 212 6 0 0 27 137 -20.555 -19.253 -15.050 -15.732 -15.750 -0.000 IL 212 212 5 212 6 1 1 97 206 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 106 216 -0.242 -2.695 -18.793 -16.961 -18.066 0.000 0.000 0.000 0.000 [ MATP 37 ] 70 83 C G - - MP 214 213 6 218 4 2 2 28 50 -18.795 -19.002 -0.000 -17.416 -13.968 -1.592 -13.957 -1.394 -12.810 -11.154 3.174 -13.470 -13.820 1.690 -14.325 -11.247 1.305 -14.146 -0.825 -9.938 ML 215 213 6 218 4 1 1 28 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 216 213 6 218 4 1 1 23 46 -12.791 -11.820 -9.687 -0.002 -8.055 -9.828 1.997 -8.816 D 217 213 6 218 4 0 0 22 45 -16.177 -15.858 -13.874 -0.000 IL 218 218 5 218 4 1 1 29 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 219 219 6 219 3 1 1 28 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 71 - u - - - ML 220 219 6 222 3 1 1 26 48 -19.705 -0.000 -18.359 -1.222 0.571 -1.919 0.865 D 221 219 6 222 3 0 0 22 45 -18.422 -3.514 -0.132 IL 222 222 3 222 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 72 - U - - - ML 223 222 3 225 3 1 1 25 47 -19.724 -0.000 -18.378 -10.097 -3.514 -10.203 1.967 D 224 222 3 225 3 0 0 20 43 -18.290 -13.803 -0.000 IL 225 225 3 225 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 73 - u - - - ML 226 225 3 228 3 1 1 24 46 -19.724 -0.000 -18.378 -0.032 -0.502 -0.024 0.414 D 227 225 3 228 3 0 0 20 43 -18.290 -2.948 -0.200 IL 228 228 3 228 3 1 1 25 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 74 - u - - - ML 229 228 3 231 3 1 1 23 45 -2.205 -0.353 -18.403 0.085 -0.244 -0.388 0.412 D 230 228 3 231 3 0 0 8 31 -18.090 -13.603 -0.000 IL 231 231 3 231 3 1 1 23 46 -1.167 -0.851 -15.789 0.000 0.000 0.000 0.000 [ MATL 42 ] 80 - c - - - ML 232 231 3 234 3 1 1 7 25 -19.749 -0.000 -18.403 0.117 0.358 -0.546 -0.075 D 233 231 3 234 3 0 0 6 25 -18.090 -13.603 -0.000 IL 234 234 3 234 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 81 - A - - - ML 235 234 3 237 3 1 1 5 23 -19.749 -0.000 -18.403 1.956 -15.281 -3.835 -4.325 D 236 234 3 237 3 0 0 5 23 -18.090 -13.603 -0.000 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 82 - A - - - ML 238 237 3 240 2 1 1 1 1 * 0.000 1.143 -0.633 -3.966 0.114 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-Val ACC bact-Val-r2-022416 LENG 76 MAXL 1091 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 21:44:39 2016 COM [1] cmbuild -F --enone /projects/lowelab/users/blin/tRNAscan/models/1.5/cm/bact-Val-r2-022416.cm /projects/lowelab/users/blin/tRNAscan/models/1.5/alignments/bact-Val-r2-022416.sto NSEQ 14967 EFFN 10.566065 CKSUM 1131101639 STATS LOCAL MSV -8.4550 0.71887 STATS LOCAL VITERBI -9.4115 0.71887 STATS LOCAL FORWARD -3.5989 0.71887 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45188 1.38039 1.27531 1.44796 1.38629 1.38629 1.38629 1.38629 0.10976 4.96414 2.33334 1.46634 0.26236 0.00000 * 1 1.94049 2.76674 0.33228 2.57425 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01547 4.86984 4.86984 1.46634 0.26236 0.13457 2.07222 2 2.13931 2.02354 0.39488 2.57287 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01889 4.96646 4.44441 1.46634 0.26236 1.09861 0.40547 3 1.46068 2.44148 0.52195 2.43581 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01410 4.96187 4.96187 1.46634 0.26236 1.30440 0.31654 4 2.05356 0.94425 1.70254 1.20221 4 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01410 4.96187 4.96187 1.46634 0.26236 1.30440 0.31654 5 1.79822 1.44181 0.84845 1.77295 5 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01445 4.96187 4.91311 1.46634 0.26236 0.84331 0.56261 6 1.67027 1.25295 1.48657 1.20398 6 u - - ( 1.38629 1.38629 1.38629 1.38629 0.05648 3.03655 4.97369 0.26686 1.45148 1.14729 0.38199 7 1.74814 2.02980 1.17090 0.95594 8 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03825 4.05461 3.90275 0.66741 0.71957 1.10634 0.40162 8 4.27191 3.94728 4.81738 0.04223 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.01408 4.96350 4.96350 1.46634 0.26236 0.50737 0.92150 9 0.07910 4.26057 3.10462 4.06883 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.01434 4.99917 4.89397 1.46634 0.26236 1.09861 0.40547 10 2.83899 4.13236 0.10180 3.80489 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02073 4.45080 4.72758 0.91818 0.50957 1.13492 0.38779 11 4.10724 0.08262 3.90450 3.15361 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01397 4.99632 4.94567 1.46634 0.26236 1.23023 0.34563 12 4.63901 3.75442 4.28210 0.04803 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01362 4.99597 4.99597 1.46634 0.26236 1.13831 0.38619 13 3.58080 0.14624 3.86769 2.43849 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.01361 4.99673 4.99673 1.46634 0.26236 0.94141 0.49443 14 0.07729 3.96061 3.50485 3.67781 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01358 4.99884 4.99884 1.46634 0.26236 1.06637 0.42199 15 2.05551 2.96081 0.28340 2.70346 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01358 4.99917 4.99917 1.46634 0.26236 1.09861 0.40547 16 2.19760 1.22650 3.00833 0.60470 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18782 4.99917 1.80491 1.46634 0.26236 1.09861 0.40547 17 2.61714 2.51770 3.12177 0.22032 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10784 2.36214 4.82748 0.51635 0.90806 0.07881 2.57992 18 3.23402 4.52039 0.07908 3.65928 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01653 4.99917 4.64087 1.46634 0.26236 1.09861 0.40547 19 3.66703 5.17786 0.04125 4.68604 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01362 4.99626 4.99626 1.46634 0.26236 1.23282 0.34456 20 1.71524 2.22267 1.27365 0.83944 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.38293 1.17266 4.75596 0.18737 1.76688 1.23282 0.34456 21 0.08748 4.01496 3.08725 3.90724 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01689 4.99442 4.60781 1.46634 0.26236 0.77691 0.61586 22 2.93732 4.02056 0.09922 3.75045 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01362 4.99598 4.99598 1.46634 0.26236 1.13952 0.38562 23 0.05565 4.29209 3.58539 4.36380 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.01361 4.99673 4.99673 1.46634 0.26236 0.94141 0.49443 24 3.21180 3.94934 0.08309 3.90284 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01990 4.34584 4.99884 0.83927 0.56568 1.06637 0.42199 25 3.93125 0.16501 3.93822 2.18028 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.01380 4.99917 4.96755 1.46634 0.26236 1.09861 0.40547 26 0.66233 3.22551 1.01576 2.49512 36 A - - , 1.38629 1.38629 1.38629 1.38629 0.01358 4.99895 4.99895 1.46634 0.26236 1.10927 0.40018 27 2.49357 0.86259 2.06143 0.99955 37 c - - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.99895 4.09379 1.46634 0.26236 1.10927 0.40018 28 1.68142 0.89275 2.25768 1.20474 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.02322 4.98897 4.12628 1.46634 0.26236 1.50507 0.25103 29 1.73204 1.22598 1.57587 1.13078 39 u - - < 1.38629 1.38629 1.38629 1.38629 0.18283 1.83125 4.97959 2.93237 0.05474 0.90784 0.51650 30 2.29773 0.86689 1.16486 1.78803 69 c - - < 1.38629 1.38629 1.38629 1.38629 0.12562 4.98897 2.19608 1.46634 0.26236 1.50507 0.25103 31 2.24384 0.83866 1.58206 1.36215 70 c - - < 1.38629 1.38629 1.38629 1.38629 0.01533 4.87868 4.87868 1.46634 0.26236 2.98733 0.05174 32 1.75864 1.13418 2.27699 0.90772 71 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01533 4.87868 4.87868 1.46634 0.26236 2.08217 0.13314 33 3.64064 3.09069 4.14896 0.09155 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01516 4.88982 4.88982 1.46634 0.26236 2.91019 0.05600 34 1.30014 1.68493 1.51810 1.13035 73 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01516 4.88982 4.88982 1.46634 0.26236 1.81501 0.17773 35 1.26301 1.58426 1.66925 1.12791 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.21867 1.66601 4.90467 0.62267 0.76897 2.79549 0.06303 36 1.25840 1.32121 1.73721 1.29804 80 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01493 4.90468 4.90468 1.46634 0.26236 2.79549 0.06303 37 0.07472 4.08956 3.48162 3.70953 81 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01493 4.90468 4.90468 1.46634 0.26236 2.79549 0.06303 38 0.76919 1.74104 2.47866 1.28223 82 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03002 4.90467 3.80950 1.46634 0.26236 2.79549 0.06303 39 1.57865 1.62608 0.73417 2.14435 83 g - - > 1.38629 1.38629 1.38629 1.38629 0.14992 2.10871 4.02712 1.85583 0.16998 1.81501 0.17773 40 2.01937 1.30371 0.78649 1.96397 93 g - - > 1.38629 1.38629 1.38629 1.38629 0.08562 2.59599 4.89447 0.18998 1.75432 2.87583 0.05802 41 1.19061 1.85587 1.08518 1.60045 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.01509 4.89447 4.89447 1.46634 0.26236 2.01314 0.14337 42 1.26481 2.40867 0.76610 1.81430 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.01493 4.90468 4.90468 1.46634 0.26236 2.79549 0.06303 43 1.22120 2.39477 0.70926 2.10438 97 g - - > 1.38629 1.38629 1.38629 1.38629 0.01493 4.90468 4.90468 1.46634 0.26236 2.76386 0.06512 44 0.87609 2.51922 0.93182 2.21428 98 a - - , 1.38629 1.38629 1.38629 1.38629 0.01674 4.90491 4.68964 1.46634 0.26236 2.79352 0.06316 45 1.88168 2.91005 0.38461 2.18501 99 G - - , 1.38629 1.38629 1.38629 1.38629 0.15811 2.13573 3.57235 1.34792 0.30081 2.59284 0.07775 46 3.17732 4.07672 0.10135 3.27759 121 G - - , 1.38629 1.38629 1.38629 1.38629 0.06600 4.88406 2.87705 1.46634 0.26236 2.95087 0.05371 47 2.04425 2.64900 2.83404 0.29972 122 U - - , 1.38629 1.38629 1.38629 1.38629 0.01604 4.83410 4.83410 1.46634 0.26236 0.91633 0.51080 48 2.46144 0.28018 3.18002 2.14168 123 C - - , 1.38629 1.38629 1.38629 1.38629 0.01493 4.90491 4.90491 1.46634 0.26236 2.79352 0.06316 49 1.28330 2.73094 0.52450 2.72007 124 G - - < 1.38629 1.38629 1.38629 1.38629 0.01493 4.90491 4.90491 1.46634 0.26236 2.79352 0.06316 50 2.00660 1.13881 1.18763 1.42540 125 c - - < 1.38629 1.38629 1.38629 1.38629 0.01493 4.90491 4.90491 1.46634 0.26236 2.79352 0.06316 51 1.85499 1.29488 1.36111 1.16079 126 u - - < 1.38629 1.38629 1.38629 1.38629 0.01493 4.90491 4.90491 1.46634 0.26236 2.79352 0.06316 52 2.02722 3.61613 0.21187 3.43132 127 G - - < 1.38629 1.38629 1.38629 1.38629 0.01493 4.90491 4.90491 1.46634 0.26236 2.79352 0.06316 53 3.13797 4.06717 0.09324 3.55693 128 G - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.90491 3.65181 1.46634 0.26236 2.79352 0.06316 54 3.21426 3.20575 3.31789 0.12437 129 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01522 4.88621 4.88621 1.46634 0.26236 0.27302 1.43162 55 3.09916 3.02074 3.39029 0.13645 130 U - - _ 1.38629 1.38629 1.38629 1.38629 0.44052 1.05143 4.98213 4.21495 0.01488 1.70496 0.20062 56 3.88213 0.05513 4.64862 3.75247 223 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01381 4.98216 4.98216 1.46634 0.26236 1.70496 0.20062 57 1.15487 3.82808 0.45596 3.52986 224 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01381 4.98216 4.98216 1.46634 0.26236 0.45186 1.01182 58 0.03215 4.82042 4.36510 4.52252 225 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01361 4.99917 4.99530 1.46634 0.26236 1.09861 0.40547 59 1.29974 2.53706 0.98617 1.28990 226 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01358 4.99915 4.99915 1.46634 0.26236 1.09603 0.40676 60 2.34583 0.95105 2.74056 0.79106 227 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03730 3.51129 4.99728 1.27804 0.32654 1.09861 0.40547 61 3.98389 0.10672 3.82699 2.79958 232 C - - > 1.38629 1.38629 1.38629 1.38629 0.01358 4.99916 4.99916 1.46634 0.26236 1.09924 0.40515 62 3.54824 0.23862 3.43424 1.88877 233 C - - > 1.38629 1.38629 1.38629 1.38629 0.01358 4.99916 4.99916 1.46634 0.26236 1.09735 0.40610 63 1.27191 1.62450 1.16249 1.56072 234 g - - > 1.38629 1.38629 1.38629 1.38629 0.01386 4.99917 4.95822 1.46634 0.26236 1.09861 0.40547 64 1.75759 1.70911 0.92072 1.39320 235 g - - > 1.38629 1.38629 1.38629 1.38629 0.01358 4.99889 4.99889 1.46634 0.26236 1.07150 0.41930 65 2.90747 0.81101 2.57091 0.85681 236 c - - > 1.38629 1.38629 1.38629 1.38629 0.02837 4.97986 3.85863 1.46634 0.26236 1.09861 0.40547 66 1.08741 1.30522 1.84851 1.45104 237 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01405 4.96551 4.96551 1.46634 0.26236 0.52088 0.90139 67 1.47109 1.62794 1.04964 1.49644 238 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01405 4.97229 4.95790 1.46634 0.26236 1.11772 0.39605 68 1.94963 0.94713 1.45094 1.44618 239 c - - ) 1.38629 1.38629 1.38629 1.38629 0.02303 4.14507 4.97219 0.72273 0.66442 1.06618 0.42208 69 1.34849 1.88184 0.85155 1.82446 241 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02567 4.97259 3.99442 1.46634 0.26236 1.10343 0.40306 70 2.63913 0.65993 2.27204 1.17574 242 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01411 4.96100 4.96100 1.46634 0.26236 1.52764 0.24468 71 2.73627 0.53227 1.62816 1.88632 243 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01411 4.96110 4.96110 1.46634 0.26236 0.56076 0.84578 72 2.71607 0.40397 2.59038 1.65440 244 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03231 3.69401 4.97266 0.48650 0.95393 1.09861 0.40547 73 0.27035 3.07057 2.53182 2.19843 246 A - - : 1.38629 1.38629 1.38629 1.38629 0.23188 4.76739 1.61720 1.46634 0.26236 1.09861 0.40547 74 4.20556 0.05397 4.67450 3.56495 247 C - - : 1.38629 1.38629 1.38629 1.38629 0.02122 4.55673 4.55673 1.46634 0.26236 3.23240 0.04026 75 4.20556 0.05397 4.67450 3.56495 248 C - - : 1.38629 1.38629 1.38629 1.38629 0.02122 4.55673 4.55673 1.46634 0.26236 3.23240 0.04026 76 0.04392 4.44463 4.07827 4.24781 249 A - - : 1.38629 1.38629 1.38629 1.38629 0.01066 4.54618 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert0000644000543100007160000516443413054730751020021 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Ala STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Ala-final-vert.cm ../Ala-2nd-align.sto COM [2] cmcalibrate --seed 208 Ala-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 2023487389 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9018 0.71864 ECMLC 0.72761 -6.00294 2.49580 1600000 581782 0.002063 ECMGC 0.30320 -52.93347 -37.31297 1600000 45599 0.008772 ECMLI 0.69967 -6.11915 2.65862 1600000 557724 0.002152 ECMGI 0.31493 -48.86172 -33.94870 1600000 43827 0.009127 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 20 41 98 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 42 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 98 - A - + MR 3 2 3 5 5 28 49 97 116 -15.061 -0.000 -14.876 -15.088 -15.980 1.853 -2.629 -2.407 -4.769 D 4 2 3 5 5 18 37 95 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 20 40 97 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 97 A U = = MP 6 5 3 10 6 28 48 96 115 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.931 -10.698 -12.232 3.528 -14.361 -15.521 -3.163 -12.274 -11.793 -2.251 -12.462 1.972 -4.568 -13.537 -11.653 -2.832 ML 7 5 3 10 6 20 39 94 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 38 94 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 17 35 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 20 40 95 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 40 95 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 96 A U = = MP 12 11 6 16 6 28 47 94 113 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.804 -14.373 -15.528 -9.831 -12.275 -11.792 0.683 -12.462 -1.257 -9.756 -13.537 -11.662 -10.830 ML 13 11 6 16 6 19 38 92 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 38 92 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 17 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 20 39 93 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 40 93 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 95 G C = = MP 18 17 6 22 6 27 45 92 111 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.384 -10.575 -14.416 0.641 -15.278 -11.960 -9.850 -14.299 -11.898 3.791 -12.166 -0.754 -10.129 -12.338 -12.174 -13.115 ML 19 17 6 22 6 19 38 90 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 38 90 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 16 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 20 39 91 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 39 91 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 94 G U = = MP 24 23 6 28 6 25 43 90 109 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.054 -3.788 -12.254 0.310 -14.385 -15.245 -9.830 -12.296 -4.075 2.524 -4.036 3.140 -9.761 -13.499 -11.669 -10.853 ML 25 23 6 28 6 19 38 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 37 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 16 34 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 39 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 39 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 93 C G = = MP 30 29 6 34 6 23 41 88 107 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.288 -9.991 -10.289 1.296 -6.820 -11.133 3.155 -4.065 -10.148 -0.778 -4.151 0.512 0.292 -10.472 0.230 -3.329 ML 31 29 6 34 6 19 37 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 37 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 16 34 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 19 38 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 38 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 92 u a = = MP 36 35 6 40 6 21 39 86 105 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 2.685 -11.630 -12.468 -9.537 -12.588 -11.733 2.848 -12.881 1.150 -2.781 ML 37 35 6 40 6 18 36 85 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 18 36 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 16 34 83 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 19 37 86 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 37 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 91 U A = = MP 42 41 6 46 4 19 37 84 103 -15.218 -15.425 -0.000 -13.839 -13.043 -13.310 -12.364 -3.562 -10.718 -12.511 -0.024 -11.631 -12.466 -9.524 -12.587 -11.689 3.838 -3.875 -8.420 -0.846 ML 43 41 6 46 4 18 35 84 104 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 17 34 84 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 16 33 83 103 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 18 36 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 18 36 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 17 35 82 101 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 49 47 6 50 3 15 33 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 17 35 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 16 34 81 100 -16.782 -0.000 1.979 -11.969 -4.139 -11.365 D 52 50 3 53 2 15 33 80 99 -8.445 -0.004 IL 53 53 3 53 2 16 34 82 101 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 15 33 80 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 40 59 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 40 59 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 22 40 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 26 G U = = MP 58 57 1 62 6 2 5 22 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.036 -10.696 -12.230 -1.924 -14.358 -15.506 -9.816 -12.273 -5.732 1.882 -12.461 3.511 -3.033 -13.530 -2.963 -1.418 ML 59 57 1 62 6 1 2 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 5 20 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -6.937 -12.508 3.825 -11.630 -12.468 -9.537 -12.588 -11.733 0.693 -3.699 -3.043 -11.270 ML 65 63 6 68 6 1 2 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 5 18 36 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.046 -13.327 -12.364 -9.564 -3.046 -12.508 -6.427 -11.630 -12.468 -9.536 -12.588 -11.729 3.976 -12.881 -2.980 -11.269 ML 71 69 6 74 6 1 2 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U A = = MP 76 75 6 80 4 2 4 16 34 -15.218 -15.425 -0.000 -13.839 -13.046 -13.327 -12.364 -9.564 -2.627 -12.508 -6.427 -11.630 -12.468 -9.536 -12.588 -11.730 3.956 -12.881 -1.705 -11.269 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 23 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 14 32 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 13 31 -16.127 -0.173 -3.146 1.932 -11.050 -2.659 -5.335 D 86 84 3 87 3 0 0 16 34 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 2 12 30 -15.954 -0.018 -6.343 -4.336 -3.260 -9.620 1.943 D 89 87 3 90 3 0 0 12 31 -14.404 -9.917 -0.002 IL 90 90 3 90 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 10 29 -15.936 -9.040 -0.003 -1.291 -4.370 -9.549 1.824 D 92 90 3 93 3 0 0 12 31 -14.536 -0.003 -8.928 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 12 31 -13.133 -0.001 -11.787 0.486 -2.221 0.310 0.195 D 95 93 3 96 3 0 0 8 26 -17.353 -5.700 -0.028 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - u - + - ML 97 96 3 99 3 1 1 11 29 -13.313 -1.783 -0.496 -0.173 -2.596 0.457 0.655 D 98 96 3 99 3 0 0 7 25 -17.325 -12.838 -0.000 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 12 -2.375 -0.311 -10.186 -0.549 -4.690 -5.560 1.703 D 101 99 3 102 3 0 0 5 10 -7.057 -0.014 -9.067 IL 102 102 3 102 3 1 1 6 12 -4.913 -0.056 -7.613 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 2.000 -12.063 -11.309 -11.396 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - G - + - ML 109 108 2 111 5 1 1 26 45 -15.061 -0.000 -14.876 -15.088 -15.980 0.349 -5.383 1.399 -3.946 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 u a = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -5.858 -9.590 -9.789 -0.370 -8.949 -10.636 0.645 -5.083 -2.320 -1.573 -10.247 0.313 2.763 -3.585 1.771 0.628 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 C G = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.934 -13.153 -3.391 -3.834 -10.675 -12.476 3.252 -3.056 -12.388 -9.267 -12.532 -11.420 1.450 -4.056 1.221 0.085 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -4.791 -12.508 -0.608 -3.603 -12.468 -9.537 -12.588 -11.733 3.913 -12.881 -2.643 -11.270 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.302 -10.662 -12.584 -2.061 -14.572 -13.524 -9.836 -12.613 -11.821 3.864 -12.374 0.148 -9.850 -13.094 -11.786 -3.531 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -11.254 -10.573 -11.262 3.027 -10.459 -12.349 -0.588 -10.886 -11.062 -0.694 -11.589 1.503 0.422 -11.676 1.035 -1.570 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -3.689 -4.133 0.412 1.342 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.713 -4.928 -13.876 1.988 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -12.716 -4.945 -13.882 1.988 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -12.733 2.000 -13.620 -11.110 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.813 -11.144 -1.045 -11.005 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -1.306 -2.861 -2.174 1.694 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 49 68 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 6 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - + - ML 166 165 2 168 3 1 5 49 68 -16.127 -0.000 -14.781 1.299 -3.662 -2.094 0.294 D 167 165 2 168 3 0 4 47 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 4 48 67 -16.782 -0.000 -1.959 -4.555 1.821 -2.590 D 170 168 3 171 2 0 3 47 66 -8.445 -0.004 IL 171 171 3 171 2 1 5 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 33 51 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 4 33 51 -16.127 -0.000 -14.781 1.962 -5.195 -4.132 -5.664 D 232 230 2 233 3 0 0 32 51 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 66 - U - + - ML 234 233 3 236 5 1 4 32 50 -15.061 -0.000 -14.876 -15.088 -15.980 -9.339 -5.384 -4.994 1.979 D 235 233 3 236 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 67 90 G C = = MP 237 236 3 241 6 2 4 31 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.100 -10.591 -13.832 0.454 -15.110 -12.160 -9.847 -13.781 -11.883 3.663 -12.204 0.973 -10.070 -12.458 -12.090 -12.487 ML 238 236 3 241 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 68 89 U G = = MP 243 242 6 247 6 2 4 29 47 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.037 -13.313 -4.150 -9.544 -10.711 -12.506 1.796 -11.626 -12.461 -2.039 -5.940 -11.704 1.097 -5.581 3.329 -11.262 ML 244 242 6 247 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 69 88 a u = = MP 249 248 6 253 6 2 2 27 45 -6.281 -5.889 -0.047 -14.710 -14.990 -8.777 -12.020 -3.216 -12.208 2.973 -14.320 -15.353 -9.760 -12.261 -11.782 2.019 -12.446 1.851 -3.489 -13.464 -11.600 -1.780 ML 250 248 6 253 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 26 44 -6.572 -6.835 -0.038 -8.491 -9.267 -8.927 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -6.096 -4.184 -9.607 -7.775 -0.113 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 86 G C = = MP 255 254 6 259 6 2 2 25 43 -15.967 -15.906 -0.075 -8.043 -14.962 -4.425 -9.953 -8.592 -9.773 2.433 -10.905 -10.372 -2.812 -10.460 -10.208 3.076 -10.456 0.545 -1.355 -9.629 -3.726 -3.482 ML 256 254 6 259 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 20 39 -14.345 -13.044 -8.841 -9.523 -9.540 -0.007 IL 259 259 5 259 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 85 G C = = MP 261 260 6 265 4 2 2 23 41 -15.115 -15.322 -0.030 -5.622 -5.130 -5.497 -11.249 0.216 -12.723 -12.423 -7.879 -11.627 -5.172 3.823 -11.694 -1.680 -3.531 -11.532 -9.849 -2.296 ML 262 260 6 265 4 1 1 23 42 -6.169 -6.351 -0.083 -5.081 -1.238 -1.483 -0.979 1.439 MR 263 260 6 265 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 20 39 -11.502 -11.184 -0.902 -1.108 IL 265 265 5 265 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - a - + - ML 267 266 6 269 3 1 1 21 39 -4.743 -0.059 -8.680 0.722 -4.268 0.224 0.177 D 268 266 6 269 3 0 0 19 38 -13.203 -0.692 -1.393 IL 269 269 3 269 3 1 1 22 40 -1.778 -0.501 -9.239 0.000 0.000 0.000 0.000 [ MATL 69 ] 76 - U - + - ML 270 269 3 272 3 1 1 19 38 -16.097 -0.000 -14.751 -5.536 -5.366 -3.825 1.957 D 271 269 3 272 3 0 0 18 37 -11.984 -0.891 -1.118 IL 272 272 3 272 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 77 - A - + - ML 273 272 3 275 3 1 1 18 37 -16.113 -0.000 -14.767 1.780 -3.711 -1.384 -3.252 D 274 272 3 275 3 0 0 17 36 -10.884 -0.667 -1.435 IL 275 275 3 275 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 78 - a - + - ML 276 275 3 278 3 1 1 17 36 -6.158 -0.077 -4.731 0.884 -4.558 0.782 -1.352 D 277 275 3 278 3 0 0 16 35 -9.496 -0.103 -3.888 IL 278 278 3 278 3 1 1 17 36 -4.803 -0.061 -7.503 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - A - + - ML 279 278 3 281 3 1 1 16 35 -16.072 -0.043 -5.104 1.153 -4.074 -1.908 0.536 D 280 278 3 281 3 0 0 15 34 -12.823 -0.439 -1.932 IL 281 281 3 281 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 81 - G - + - ML 282 281 3 284 3 1 1 15 34 -4.861 -0.087 -5.391 -0.284 -1.894 1.362 -1.556 D 283 281 3 284 3 0 0 9 27 -12.828 -2.201 -0.354 IL 284 284 3 284 3 1 1 18 36 -1.424 -0.676 -9.317 0.000 0.000 0.000 0.000 [ MATL 74 ] 84 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -3.100 -1.951 -1.591 1.719 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ala LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Ala-final-vert.cm ../Ala-2nd-align.sto NSEQ 1085 EFFN 6.104946 CKSUM 2023487389 STATS LOCAL MSV -8.8759 0.71864 STATS LOCAL VITERBI -9.5958 0.71864 STATS LOCAL FORWARD -3.5516 0.71864 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29583 1.73074 1.41641 1.18223 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 0.00000 * 1 0.51560 3.27601 1.15170 3.01629 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 2 0.28999 3.89075 1.58988 3.59903 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 3 2.17503 3.59470 0.18980 3.44817 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 4 1.86420 2.96904 0.31058 2.80339 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 5 1.78913 0.94247 1.69071 1.35154 5 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 6 2.73765 0.96044 2.50102 0.75385 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 7 2.91744 1.85333 2.73278 0.32272 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 8 3.77309 3.56406 4.31854 0.06681 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 9 0.06852 4.11661 3.48436 3.95007 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 10 2.11364 2.87693 0.30260 2.47696 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 11 3.27040 0.31582 3.04251 1.68684 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 12 4.79127 3.35399 4.71521 0.05362 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 13 4.68220 3.26625 4.59277 0.05925 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 14 0.04416 4.43933 4.07321 4.24237 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 15 0.12268 3.65726 2.87318 3.40721 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11360 4.44793 2.34675 1.46634 0.26236 1.09861 0.40547 16 2.82605 2.65769 3.44026 0.17604 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03500 4.36022 3.83421 1.46634 0.26236 2.32001 0.10344 17 2.11935 2.58956 3.11949 0.27357 17 U + - _ 1.38629 1.38629 1.38629 1.38629 1.35560 4.35134 0.31564 1.46634 0.26236 0.20337 1.69267 18 1.14988 1.78291 1.50023 1.23067 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06931 3.39679 3.39679 1.46634 0.26236 3.34668 0.03584 19 1.26234 1.78816 1.47287 1.13796 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.29717 3.43173 1.49276 1.46634 0.26236 4.05213 0.01754 20 1.25347 1.68986 1.77502 1.02037 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10573 2.80841 3.21802 1.03246 0.44026 0.03360 3.40989 21 0.04425 4.43737 4.07134 4.24037 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02371 4.44679 4.44679 1.46634 0.26236 1.03762 0.43742 22 0.07036 4.73672 3.05667 4.41237 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 23 0.06249 4.84765 3.17826 4.50355 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 24 1.88814 3.13089 0.27956 3.01902 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 25 2.89871 1.15601 2.62116 0.58439 26 U = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 26 1.20061 2.94506 0.56788 2.52988 27 G + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 27 1.80012 1.53141 1.65495 0.85006 28 u = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 28 2.13350 0.89903 2.00545 1.07876 29 c = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 29 3.72365 2.07746 3.53979 0.19652 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 30 2.16259 3.07336 0.24689 2.85628 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 31 1.21218 1.73081 1.31836 1.35582 32 a = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 32 2.02067 2.35781 1.40134 0.64143 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 33 3.53419 3.21959 4.06263 0.09032 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 34 3.53614 3.22256 4.06469 0.09009 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 35 3.83089 4.82921 0.04360 4.34418 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 36 4.20037 0.05425 4.67016 3.55993 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 37 0.21761 3.46034 2.07883 3.24251 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 38 1.94956 2.33943 2.48088 0.38918 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 39 1.75056 1.68816 1.38175 0.94078 40 u = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 40 3.15783 0.33773 2.87906 1.67181 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 41 0.22602 3.69944 1.93872 3.39108 42 A = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 42 1.49543 2.16972 0.70474 1.78737 43 g = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 43 1.20541 1.94686 1.15144 1.42077 44 g = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 44 0.71456 2.25774 2.13843 1.24422 45 a + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 45 2.17700 3.09103 0.26752 2.57851 46 G + - , 1.38629 1.38629 1.38629 1.38629 1.45220 4.44793 0.28204 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 47 1.80303 1.30592 1.07728 1.49719 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 48 1.80069 1.30664 1.07815 1.49672 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 49 1.79965 1.30696 1.07854 1.49651 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 50 1.79924 1.30709 1.07869 1.49643 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 51 1.79915 1.30712 1.07873 1.49641 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 52 1.79920 1.30710 1.07871 1.49642 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 57 1.73045 1.22012 1.16203 1.53827 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 58 1.73036 1.22016 1.16207 1.53824 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 59 1.73035 1.22017 1.16207 1.53824 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 60 1.73048 1.22011 1.16202 1.53828 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 61 1.73089 1.21994 1.16187 1.53840 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 62 1.73177 1.21956 1.16155 1.53866 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19645 0.01516 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03056 3.50330 64 0.10016 3.61893 3.26661 3.49471 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 65 3.08917 2.94810 3.45660 0.13871 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 66 2.10736 3.38739 0.21668 3.23261 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 67 2.72593 1.26635 2.42486 0.57241 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 68 1.05446 2.74441 0.69130 2.44864 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.04845 3.84880 3.65012 0.87876 0.53665 1.09861 0.40547 69 1.35563 2.56702 0.56556 2.32880 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.06012 4.43354 3.06878 1.46634 0.26236 1.44000 0.27040 70 1.81029 2.70146 0.37952 2.46395 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.04011 4.39832 3.61115 1.46634 0.26236 0.79420 0.60137 71 1.02245 2.21864 1.40128 1.25440 73 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05493 3.23037 4.27536 0.70403 0.68239 0.73416 0.65375 72 2.88607 2.83323 3.20262 0.16874 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02406 4.43234 4.43234 1.46634 0.26236 0.92241 0.50676 73 0.30183 2.76040 2.17339 2.48314 77 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02385 4.44084 4.44084 1.46634 0.26236 0.95426 0.48629 74 0.92944 2.46087 1.04733 1.77790 78 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06380 3.81094 3.22689 0.85266 0.55561 0.97263 0.47495 75 0.81039 2.23136 2.07423 1.13234 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04653 4.41966 3.39842 1.46634 0.26236 0.66496 0.72215 76 1.47362 2.24852 0.66915 1.87599 81 G + - _ 1.38629 1.38629 1.38629 1.38629 0.06929 3.28666 3.52129 0.78933 0.60541 1.26739 0.33068 77 2.26287 2.20598 2.38488 0.36571 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05579 4.40820 3.16797 1.46634 0.26236 0.96375 0.48039 78 2.76294 0.44787 2.51206 1.52877 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.02498 4.39543 4.39543 1.46634 0.26236 0.34375 1.23480 79 2.60324 0.69792 2.36520 1.09536 86 c = - > 1.38629 1.38629 1.38629 1.38629 0.02372 4.44624 4.44624 1.46634 0.26236 1.01092 0.45237 80 2.79381 1.00353 2.54895 0.70509 88 u = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 81 1.66598 2.57743 0.42308 2.52574 89 G = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 82 3.47210 0.32809 3.19969 1.57081 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 83 0.38385 2.87348 1.71685 2.49336 91 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 84 1.02368 2.67735 0.72268 2.44721 92 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 85 1.65583 2.03519 0.79524 1.48308 93 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 86 3.01455 0.87579 2.74419 0.75482 94 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 87 3.67276 0.23885 3.41959 1.86864 95 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 88 3.80136 1.87903 3.67433 0.22370 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 89 3.32533 2.18818 3.09896 0.21465 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02368 4.44793 4.44793 1.46634 0.26236 1.09861 0.40547 90 0.23443 2.70034 2.55777 2.74387 98 A + - : 1.38629 1.38629 1.38629 1.38629 0.01191 4.43616 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Arg STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Arg-final-vert.cm ../Arg-2nd-align.sto COM [2] cmcalibrate --seed 208 Arg-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 358479052 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.8855 0.71857 ECMLC 0.63036 -6.72580 2.65936 1600000 445123 0.002696 ECMGC 0.29686 -40.57749 -25.09780 1600000 39606 0.010099 ECMLI 0.59346 -6.61368 3.19992 1600000 405993 0.002956 ECMGI 0.31855 -36.24971 -21.90483 1600000 38601 0.010362 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 120 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 18 40 100 122 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 41 100 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - a - + MR 3 2 3 5 5 26 48 99 120 -15.061 -0.000 -14.876 -15.088 -15.980 0.876 -2.137 -2.406 0.806 D 4 2 3 5 5 16 36 97 119 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 40 99 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 A U = = MP 6 5 3 10 6 26 48 98 119 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 0.041 -2.520 -3.689 3.156 -2.099 -10.583 -6.266 -2.723 -3.982 0.043 -10.467 -0.922 1.858 -3.929 -8.103 -3.420 ML 7 5 3 10 6 18 38 96 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 38 96 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 34 93 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 39 97 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 97 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 G C = = MP 12 11 6 16 6 26 46 96 117 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.086 -2.489 -9.787 1.313 -10.918 -10.381 -0.997 -10.477 -10.224 3.599 -10.470 -1.804 -1.829 -5.547 -7.991 -8.752 ML 13 11 6 16 6 17 38 94 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 37 94 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 34 91 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 39 95 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 39 95 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 99 G C = = MP 18 17 6 22 6 24 44 94 115 -15.995 -5.095 -0.043 -14.710 -14.990 -15.385 -9.963 -2.301 -3.545 2.343 -10.912 -5.825 -3.477 -4.757 -5.092 3.235 -10.466 -0.819 -1.169 -6.013 -7.986 -5.959 ML 19 17 6 22 6 17 37 92 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 37 92 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 33 89 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 38 93 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 42 93 114 -6.843 -0.020 -10.354 -8.522 -9.627 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 u a = = MP 24 23 6 28 6 23 42 92 113 -15.995 -4.834 -0.052 -14.710 -14.990 -15.385 -5.322 -2.823 -6.238 1.061 -0.841 -4.972 1.101 -2.719 -4.003 1.657 -6.478 -3.244 2.745 -3.805 -0.658 -3.249 ML 25 23 6 28 6 17 37 90 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 37 90 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 14 33 87 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 38 91 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 41 91 112 -7.092 -0.016 -10.604 -8.771 -9.877 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 A U = = MP 30 29 6 34 6 21 40 90 111 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -1.518 0.219 -4.478 3.169 -3.048 -3.096 -2.234 -4.812 -6.864 1.831 -10.312 -1.004 -1.550 -2.482 -6.052 -1.475 ML 31 29 6 34 6 17 36 88 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 36 88 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 33 86 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 89 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 89 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 g c = = MP 36 35 6 40 6 19 38 88 109 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -5.780 -0.392 -9.723 2.614 -3.068 -6.649 -0.868 -1.616 -10.140 2.633 -10.405 -1.699 -0.185 -1.745 -4.264 -1.517 ML 37 35 6 40 6 16 36 87 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 35 86 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 33 85 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 36 87 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 87 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 U A = = MP 42 41 6 46 4 17 36 86 107 -15.218 -15.425 -0.000 -13.839 -10.303 -10.005 -5.581 -2.217 -4.998 -6.107 1.146 -4.985 -10.160 -0.020 -10.673 -7.572 3.598 -4.702 -1.862 -4.086 ML 43 41 6 46 4 16 35 86 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 15 34 85 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 33 84 106 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 35 87 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 35 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 15 34 84 105 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 49 47 6 50 3 13 32 82 104 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 34 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 14 33 83 104 -16.782 -0.000 1.980 -5.794 -4.764 -11.031 D 52 50 3 53 2 13 32 82 103 -8.445 -0.004 IL 53 53 3 53 2 14 33 83 105 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 32 82 103 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 48 69 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 48 69 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 30 51 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 28 G C = = MP 58 57 1 62 6 2 3 30 51 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.011 -3.970 -10.259 -0.328 -11.423 -3.813 -6.492 -10.903 -5.776 3.571 -10.850 1.474 -6.751 -5.858 -8.500 -2.173 ML 59 57 1 62 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 29 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 U A = = MP 64 63 6 68 6 2 3 28 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -4.106 -12.508 -2.588 -11.630 -12.468 -9.537 -12.588 -11.733 3.976 -12.881 -4.786 -11.270 ML 65 63 6 68 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 26 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 24 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 27 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 C G = = MP 70 69 6 74 6 2 3 26 47 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -2.284 -13.327 -4.769 -9.564 -0.991 -12.508 3.043 -3.687 -12.467 -9.535 -12.587 -11.731 2.774 -12.880 -3.416 -11.269 ML 71 69 6 74 6 1 1 25 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 25 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 23 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 U A = = MP 76 75 6 80 4 2 3 24 45 -15.218 -15.425 -0.000 -13.839 -5.287 -13.327 -12.364 -3.076 1.514 -12.508 -3.006 -11.630 -12.468 -9.536 -12.588 -11.729 3.673 -12.881 -4.043 -4.052 ML 77 75 6 80 4 1 1 24 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 24 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 23 44 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 25 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 22 43 -16.127 -0.000 -14.781 1.972 -11.455 -5.729 -4.132 D 83 81 6 84 3 0 0 20 42 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 21 42 -16.127 -1.021 -0.979 1.910 -3.438 -3.474 -4.091 D 86 84 3 87 3 0 0 20 41 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 23 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 20 41 -15.106 -1.020 -0.980 -0.837 0.853 -4.977 0.680 D 89 87 3 90 3 0 0 19 40 -16.568 -12.081 -0.000 IL 90 90 3 90 3 1 1 22 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 19 40 -4.014 -7.189 -0.103 -9.845 0.941 -10.976 1.055 D 92 90 3 93 3 0 0 19 40 -17.145 -0.210 -2.882 IL 93 93 3 93 3 1 1 20 42 -4.901 -0.057 -7.601 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 2 19 41 -15.552 -0.000 -14.206 1.483 -4.909 0.226 -10.151 D 95 93 3 96 3 0 0 17 38 -15.942 -1.514 -0.622 IL 96 96 3 96 3 1 1 21 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - a - + - ML 97 96 3 99 3 1 1 18 40 -15.781 -1.801 -0.488 0.972 0.246 -2.389 -0.598 D 98 96 3 99 3 0 0 11 32 -15.321 -10.834 -0.001 IL 99 99 3 99 3 1 1 21 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - c - + - ML 100 99 3 102 3 1 1 19 40 -2.923 -0.204 -12.634 -1.270 0.924 -7.195 0.749 D 101 99 3 102 3 0 0 6 28 -17.177 -0.000 -11.569 IL 102 102 3 102 3 1 1 20 41 -1.250 -0.791 -9.282 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.930 -3.653 -5.949 -3.434 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - + - ML 109 108 2 111 5 1 1 26 45 -15.061 -0.000 -14.876 -15.088 -15.980 1.406 -0.360 -2.896 -1.198 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 a u = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -2.634 -3.093 -7.404 2.480 -0.618 -4.714 -0.584 -3.379 -5.763 1.490 -8.045 -2.244 2.451 -5.008 -3.929 -3.679 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 u a = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.268 -5.448 -10.272 1.353 -3.259 -6.702 2.539 -4.871 -10.133 -0.859 -10.648 -2.916 2.661 -10.454 -1.437 -3.575 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.032 -13.329 -12.364 -9.565 -3.484 -3.732 -2.251 -11.630 -12.468 -9.537 -12.588 -11.733 3.944 -7.645 -3.350 -11.270 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.157 -4.251 -13.934 1.443 -15.078 -12.069 -2.920 -13.903 -11.877 3.689 -12.177 -2.333 -10.023 -12.380 -12.035 -12.620 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.037 -1.073 -12.232 3.835 -14.373 -15.528 -9.831 -12.275 -11.792 0.001 -12.462 -5.334 -2.572 -5.018 -11.661 -5.046 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -12.202 -2.607 -13.204 1.939 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -12.742 -5.068 -13.918 1.989 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -11.656 1.990 -12.137 -5.259 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -5.228 -12.430 1.990 -11.403 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.096 -11.071 0.897 -10.981 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -3.462 1.966 -11.127 -10.149 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 49 69 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 4 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 3 49 69 -16.127 -0.002 -9.791 1.737 -1.622 -4.762 -1.719 D 167 165 2 168 3 0 1 47 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - + - ML 169 168 3 171 2 1 2 48 68 -16.781 -0.000 1.245 -4.828 0.643 -4.898 D 170 168 3 171 2 0 1 47 67 -8.678 -0.004 IL 171 171 3 171 2 1 2 49 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 47 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 33 53 -16.127 -0.149 -3.348 IL 230 230 2 230 3 1 3 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 3 33 53 -5.497 -0.032 -14.632 1.838 -2.525 -3.342 -2.713 D 232 230 2 233 3 0 1 33 53 -0.005 -9.716 -8.594 IL 233 233 3 233 3 1 2 33 53 -7.757 -0.008 -10.457 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 3 32 52 -15.061 -0.000 -14.876 -15.088 -15.980 -1.960 -0.174 -5.656 1.504 D 235 233 3 236 5 0 0 31 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 33 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 92 U A = = MP 237 236 3 241 6 2 3 31 51 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.072 -11.991 -11.743 -2.977 -3.851 -3.993 2.440 -11.119 -11.729 -3.413 -12.033 -9.783 3.308 -6.160 -1.747 -10.488 ML 238 236 3 241 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 91 a u = = MP 243 242 6 247 6 2 3 29 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.960 -3.310 -9.780 2.896 -10.889 -3.973 -0.061 -4.150 -10.215 2.193 -10.464 -0.128 0.776 -5.672 -3.310 -4.276 ML 244 242 6 247 6 1 1 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 90 U A = = MP 249 248 6 253 6 2 2 27 47 -15.995 -15.934 -0.007 -14.710 -14.990 -7.635 -6.146 -9.994 -4.611 -1.465 -4.162 -11.136 0.371 -5.823 -4.761 -1.231 -10.664 -4.848 3.734 -10.475 -1.602 -3.673 ML 250 248 6 253 6 1 1 26 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 27 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 27 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 73 89 G C = = MP 255 254 6 259 6 2 2 25 45 -15.987 -15.927 -0.194 -4.476 -6.536 -3.839 -12.132 -3.246 -12.358 1.549 -14.442 -14.352 -9.823 -12.397 -11.796 3.686 -12.417 -5.337 -9.784 -13.327 -11.702 -3.774 ML 256 254 6 259 6 1 1 24 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 24 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 21 41 -12.513 -11.211 -7.008 -7.690 -7.708 -0.026 IL 259 259 5 259 6 1 1 25 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 25 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 74 88 G C = = MP 261 260 6 265 4 2 2 24 43 -9.717 -15.223 -0.180 -3.104 -5.808 -1.332 -9.759 1.852 -2.390 -10.351 -2.124 -10.433 -10.155 3.517 -10.413 -4.501 -6.232 -4.639 -7.976 -8.717 ML 262 260 6 265 4 1 1 23 43 -1.001 -9.678 -1.869 -2.150 1.540 -0.226 -4.918 -2.296 MR 263 260 6 265 4 1 1 22 42 -8.967 -7.996 -1.468 -0.661 1.545 -0.314 -3.110 -2.622 D 264 260 6 265 4 0 0 21 41 -11.704 -11.385 -0.911 -1.097 IL 265 265 5 265 4 1 1 23 42 -6.737 -7.420 -0.024 -9.905 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 1 22 41 -5.671 -0.029 -14.542 -2.083 -0.940 -5.288 1.686 D 268 266 6 269 3 0 0 20 40 -14.840 -0.301 -2.411 IL 269 269 3 269 3 1 1 22 41 -5.034 -0.052 -7.734 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 21 40 -16.085 -0.097 -3.942 -1.838 -1.047 -2.616 1.620 D 271 269 3 272 3 0 0 20 39 -12.435 -0.013 -6.827 IL 272 272 3 272 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - a - + - ML 273 272 3 275 3 1 1 20 39 -16.033 -0.001 -10.508 0.560 0.353 -4.513 0.269 D 274 272 3 275 3 0 0 18 38 -13.570 -1.090 -0.915 IL 275 275 3 275 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 19 38 -5.051 -0.062 -6.399 1.617 -1.985 -2.600 -0.957 D 277 275 3 278 3 0 0 16 36 -12.686 -1.161 -0.856 IL 278 278 3 278 3 1 1 21 40 -1.433 -0.672 -9.132 0.000 0.000 0.000 0.000 [ MATL 72 ] 83 - A - + - ML 279 278 3 281 3 1 1 17 37 -16.083 -0.037 -5.294 1.793 -1.832 -4.636 -2.229 D 280 278 3 281 3 0 0 11 31 -12.514 -8.027 -0.006 IL 281 281 3 281 3 1 1 19 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 84 - c - + - ML 282 281 3 284 3 1 1 16 36 -4.989 -0.262 -2.893 0.231 0.519 0.032 -1.430 D 283 281 3 284 3 0 0 9 29 -13.368 -6.171 -0.020 IL 284 284 3 284 3 1 1 19 38 -1.349 -0.723 -9.213 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.942 0.757 -5.407 1.109 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Arg LENG 90 MAXL 161 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Arg-final-vert.cm ../Arg-2nd-align.sto NSEQ 1085 EFFN 15.632801 CKSUM 358479052 STATS LOCAL MSV -8.9383 0.71857 STATS LOCAL VITERBI -9.4717 0.71857 STATS LOCAL FORWARD -4.2012 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.14977 1.59683 1.67617 1.22533 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 0.00000 * 1 0.88474 1.94266 1.77423 1.29375 1 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 2 1.66060 2.77055 0.37926 2.76490 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 3 1.26301 2.99244 0.51519 2.66430 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 4 1.68439 1.53726 1.52518 0.96262 4 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 5 0.83942 2.04021 1.32443 1.75978 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 6 1.11367 2.08820 0.95870 1.80579 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 7 2.70713 1.52396 2.17812 0.50721 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 8 4.98307 4.66649 5.55925 0.02031 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 9 0.03599 4.59161 4.11977 4.71409 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 10 2.07358 3.04470 0.26700 2.79715 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 11 5.76704 4.02109 5.78140 0.02444 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 12 2.78993 0.73913 2.71143 0.92987 12 c = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 13 3.91765 1.51873 4.26049 0.29168 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 14 0.03972 4.74135 4.33767 4.06604 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 15 0.11624 3.26552 3.29495 3.36695 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.60385 5.11990 0.80448 1.46634 0.26236 1.09861 0.40547 16 1.71652 0.95430 2.74148 0.99221 16 c + - _ 1.38629 1.38629 1.38629 1.38629 0.52815 4.53768 0.91727 1.46634 0.26236 4.34179 0.01310 17 2.23551 0.96393 2.81211 0.79497 17 u + - _ 1.38629 1.38629 1.38629 1.38629 1.04943 2.88609 0.52076 0.54094 0.87276 0.16184 1.90096 18 0.40337 3.54610 1.29590 3.52512 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01688 4.78307 4.78307 1.46634 0.26236 1.05185 0.42969 19 0.84645 1.34478 2.35633 1.53386 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.95138 4.91435 0.50013 1.46634 0.26236 3.52893 0.02978 20 1.68872 1.04182 2.45920 0.97570 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12323 2.32660 4.00028 0.71615 0.67066 0.01744 4.05789 21 0.09556 3.40117 3.87992 3.29284 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 22 0.12000 4.41121 2.57868 3.68616 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 23 0.92512 2.89144 0.73499 2.68075 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 24 0.02910 5.86037 3.86202 5.33728 27 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 25 3.09543 0.43853 2.90186 1.36711 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 26 0.51068 1.68863 2.69700 1.91234 29 A + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 27 1.23655 1.76308 1.55057 1.12094 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 28 1.83235 1.04255 2.24172 0.96461 31 u = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 29 6.34827 5.77066 6.66327 0.00616 32 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 30 1.79086 3.58446 0.24909 3.65270 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 31 0.15539 4.63053 2.21657 3.68154 34 A = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 32 4.06373 2.94653 4.57281 0.08342 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 33 4.98307 4.66649 5.55925 0.02031 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 34 4.46891 3.89104 4.99826 0.03940 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 35 5.02304 0.02820 5.33940 4.10907 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 36 4.29439 5.80100 0.02236 5.21343 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 37 0.62006 4.46732 0.82849 4.27600 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 38 3.69234 0.04850 4.92986 4.18647 41 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 39 3.92783 2.12194 4.40979 0.16445 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 40 3.90020 0.27739 3.43378 1.66212 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 41 0.00847 6.71083 5.41061 5.89845 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 42 1.07277 2.41699 0.95692 1.68915 45 g = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 43 1.16148 1.64979 1.70876 1.15901 46 u = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 44 0.24143 2.40990 3.42370 2.38513 47 A + - , 1.38629 1.38629 1.38629 1.38629 0.01299 5.11990 4.97223 1.46634 0.26236 1.09861 0.40547 45 0.54743 3.68152 1.00448 3.50176 48 A + - , 1.38629 1.38629 1.38629 1.38629 2.12321 5.11895 0.13425 1.46634 0.26236 1.15030 0.38059 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 47 1.80280 1.30600 1.07737 1.49714 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 48 1.80031 1.30676 1.07829 1.49664 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 49 1.79918 1.30711 1.07872 1.49641 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 50 1.79870 1.30725 1.07889 1.49632 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 51 1.79856 1.30730 1.07895 1.49629 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 52 1.79857 1.30729 1.07894 1.49629 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 53 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 54 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 55 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 57 1.72986 1.22038 1.16225 1.53809 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 58 1.72981 1.22040 1.16227 1.53808 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 59 1.72985 1.22038 1.16225 1.53809 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 60 1.73006 1.22029 1.16218 1.53815 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 61 1.73056 1.22008 1.16199 1.53830 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 62 1.73158 1.21964 1.16162 1.53860 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01358 4.30621 64 0.17852 2.81390 3.14604 2.80505 67 A + - , 1.38629 1.38629 1.38629 1.38629 0.02975 3.75775 5.11990 0.45151 1.01243 1.09861 0.40547 65 2.45069 1.55656 3.58244 0.39290 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 66 3.04387 1.05075 2.81793 0.61075 70 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 67 1.02954 2.31558 0.90031 1.98286 71 g = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 68 2.60703 1.69811 2.35839 0.43287 72 U = - < 1.38629 1.38629 1.38629 1.38629 0.01647 5.11990 4.57029 1.46634 0.26236 1.09861 0.40547 69 1.61094 3.50785 0.31255 3.25028 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.08605 5.11551 2.57111 1.46634 0.26236 1.31710 0.31185 70 1.42576 2.70244 0.46465 2.74449 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.15060 3.54633 2.19843 0.40017 1.10928 0.73790 0.65032 71 2.54207 2.03248 3.56419 0.27185 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03093 3.74793 4.97715 0.50836 0.92000 0.27946 1.41139 72 2.34519 2.05029 2.86993 0.33021 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07110 5.09473 2.77253 1.46634 0.26236 0.32769 1.27507 73 1.07903 1.22455 2.77695 1.19087 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01330 5.06336 4.97855 1.46634 0.26236 0.82807 0.57429 74 0.35567 2.45317 2.71195 1.91822 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04987 3.43386 4.11119 0.65705 0.73059 0.90327 0.51960 75 0.20323 2.52874 3.45020 2.62538 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03494 5.09329 3.56857 1.46634 0.26236 2.00061 0.14532 76 1.21593 1.20200 1.45612 1.77293 84 c + - _ 1.38629 1.38629 1.38629 1.38629 0.16950 3.39782 2.09991 0.68060 0.70585 2.30642 0.10494 77 2.58115 0.93614 3.41756 0.69438 87 u + - _ 1.38629 1.38629 1.38629 1.38629 0.11326 4.94814 2.30275 1.46634 0.26236 0.24322 1.53293 78 2.92349 0.46610 2.69285 1.38181 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.01343 5.00984 5.00984 1.46634 0.26236 0.14353 2.01214 79 3.59201 0.33659 3.31085 1.50611 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11551 5.11551 1.46634 0.26236 0.76749 0.62395 80 0.49127 2.53395 1.52988 2.38328 90 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 81 2.15521 1.02978 2.19464 0.87794 91 u = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 82 0.67078 2.91842 0.98129 2.81602 92 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 83 0.57253 2.27728 1.39303 2.46488 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 84 2.09446 0.95235 2.02168 1.02556 94 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 85 1.95879 1.29413 1.89039 0.83512 95 u = - ) 1.38629 1.38629 1.38629 1.38629 0.04352 3.30732 5.11990 0.29956 1.35147 1.09861 0.40547 86 1.06459 1.60445 1.41410 1.55596 97 a = - ) 1.38629 1.38629 1.38629 1.38629 0.03825 3.45620 5.11990 0.34355 1.23530 1.09861 0.40547 87 2.86798 0.58070 2.79812 1.13086 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 88 2.92549 0.42089 2.62922 1.52433 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 89 1.29408 1.96096 1.79550 0.86969 101 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 90 0.88678 2.28806 2.39079 0.92888 102 a + - : 1.38629 1.38629 1.38629 1.38629 0.00603 5.11390 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Asn STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:49 2015 COM [1] cmbuild --hand --enone Asn-final-vert.cm ../Asn-2nd-align.sto COM [2] cmcalibrate --seed 208 Asn-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 21435537 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.8910 0.71869 ECMLC 0.58959 -8.46437 2.02742 1600000 582994 0.002058 ECMGC 0.31347 -44.50760 -29.75502 1600000 40782 0.009808 ECMLI 0.59830 -7.70471 2.54627 1600000 553053 0.002170 ECMGI 0.31870 -41.78094 -27.35008 1600000 39757 0.010061 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 128 -15.013 -16.259 -0.035 -5.382 IL 1 1 2 1 4 22 44 103 129 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 23 45 104 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - G - + MR 3 2 3 5 5 26 47 102 128 -15.027 -0.000 -14.843 -15.055 -15.946 -3.998 -5.861 1.862 -1.808 D 4 2 3 5 5 19 41 100 126 -10.299 -1.657 -7.925 -0.574 -7.351 IR 5 5 3 5 5 19 41 102 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 U A = = MP 6 5 3 10 6 26 47 101 127 -15.972 -15.911 -0.000 -14.688 -14.968 -15.363 -3.486 -13.275 -12.341 -9.514 -1.054 -12.491 -6.409 -5.021 -12.442 -2.260 -12.564 -11.638 3.903 -12.860 -2.741 -4.019 ML 7 5 3 10 6 18 39 99 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 21 43 100 126 -11.541 -10.270 -0.042 -10.249 -5.382 -8.462 -5.476 -4.992 -6.319 1.976 D 9 5 3 10 6 15 34 97 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 40 100 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 40 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 A U = = MP 12 11 6 16 6 26 45 99 125 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -3.151 -10.698 -12.233 3.873 -14.375 -15.530 -9.832 -12.276 -11.793 -0.618 -12.463 -0.783 -9.757 -13.539 -11.663 -10.832 ML 13 11 6 16 6 18 38 97 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 38 97 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 34 95 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 40 98 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 40 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 G C = = MP 18 17 6 22 6 25 43 97 123 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.066 -3.741 -12.263 0.303 -14.282 -14.314 -9.640 -12.334 -11.772 3.739 -12.390 -1.996 -9.631 -13.202 -0.536 -1.324 ML 19 17 6 22 6 17 38 95 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 37 95 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 33 93 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 39 96 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 39 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 A U = = MP 24 23 6 28 6 23 41 95 121 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.858 -3.226 -11.989 3.541 -13.871 -14.247 -3.200 -12.134 -11.680 0.889 -12.295 0.864 -9.239 -5.807 -4.977 -1.247 ML 25 23 6 28 6 17 37 93 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 37 93 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 33 91 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 38 94 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 38 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 U A = = MP 30 29 6 34 6 21 39 93 119 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -10.606 -10.327 -10.570 0.379 -5.946 -11.356 1.758 -6.626 -10.443 -2.998 -10.931 -7.911 3.207 -10.772 0.895 -4.029 ML 31 29 6 34 6 17 36 91 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 36 91 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 33 89 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 37 92 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 92 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 u a = = MP 36 35 6 40 6 19 37 91 117 -6.304 -15.935 -0.019 -14.712 -14.991 -15.387 -10.069 -6.601 -9.943 2.126 -10.029 -10.605 -0.935 -6.272 -10.193 1.630 -10.533 0.078 2.530 -9.883 -0.256 -1.643 ML 37 35 6 40 6 17 35 90 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 34 90 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 32 88 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 36 90 116 -6.552 -6.815 -0.038 -8.470 -9.246 -8.906 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 90 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = MP 42 41 6 46 4 17 35 89 115 -15.219 -15.426 -0.020 -6.203 -12.687 -10.574 -13.128 1.760 -14.702 -12.460 -9.662 -13.179 -11.832 3.560 -4.153 -1.491 -1.326 -12.553 -11.779 -11.786 ML 43 41 6 46 4 16 34 89 115 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 15 33 88 114 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 32 87 113 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 34 90 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 34 89 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 15 33 87 113 -16.109 -0.002 -9.604 1.874 -3.021 -3.365 -3.137 D 49 47 6 50 3 14 32 86 112 -11.377 -0.027 -5.768 IL 50 50 3 50 3 15 33 88 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 14 32 86 112 -3.865 -0.103 1.450 -5.469 -2.432 0.084 D 52 50 3 53 2 13 31 85 111 -8.705 -0.003 IL 53 53 3 53 2 14 32 86 112 -8.156 -0.005 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 31 85 111 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 47 64 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 47 64 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 29 46 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 12 31 G C = = MP 58 57 1 62 6 2 3 29 46 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.101 -10.643 -12.308 -1.936 -14.291 -0.537 -3.424 -12.372 -11.780 3.078 -12.387 2.688 -9.650 -13.180 -11.539 -3.957 ML 59 57 1 62 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 30 C G = = MP 64 63 6 68 6 2 3 27 44 -15.996 -15.935 -0.008 -14.712 -7.443 -15.387 -13.048 -13.330 -12.365 -9.567 -10.716 -12.510 3.888 -11.631 -12.469 -9.538 -12.589 -11.734 0.106 -12.882 -3.072 -11.271 ML 65 63 6 68 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 29 C G = = MP 70 69 6 74 6 2 3 25 42 -15.988 -15.927 -0.000 -14.703 -14.983 -15.378 -13.040 -13.322 -12.357 -9.558 -4.205 -12.501 3.178 -11.623 -12.461 -9.530 -12.581 -11.726 2.024 -12.874 1.496 -11.263 ML 71 69 6 74 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 24 42 -10.129 -8.858 -0.115 -8.836 -3.970 -7.050 -3.564 -5.009 1.939 -4.304 D 73 69 6 74 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 28 c g = = MP 76 75 6 80 4 2 2 23 40 -15.219 -15.426 -0.053 -4.789 -0.529 -4.081 1.906 -0.538 -1.917 -4.462 2.842 -5.161 -3.309 -0.480 -8.016 -4.369 -0.132 -5.235 -0.247 -0.617 ML 77 75 6 80 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - + - ML 82 81 6 84 3 1 2 21 38 -16.075 -0.000 -14.729 -0.605 -9.951 1.676 -2.768 D 83 81 6 84 3 0 0 17 35 -12.770 -8.283 -0.005 IL 84 84 3 84 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - c - + - ML 85 84 3 87 3 1 1 20 37 -16.075 -0.010 -7.226 -1.032 0.807 -2.557 0.670 D 86 84 3 87 3 0 0 16 35 -12.770 -8.283 -0.005 IL 87 87 3 87 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - + - ML 88 87 3 90 3 1 1 19 36 -16.066 -4.070 -0.089 -1.220 -2.869 -2.747 1.716 D 89 87 3 90 3 0 0 16 34 -13.003 -8.516 -0.004 IL 90 90 3 90 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 21 38 -1.019 -0.983 -10.651 0.242 -3.668 -0.131 0.868 D 92 90 3 93 3 0 0 11 30 -17.463 -0.056 -4.708 IL 93 93 3 93 3 1 1 20 37 -1.570 -0.597 -9.011 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - + - ML 94 93 3 96 3 1 2 11 30 -16.076 -0.000 -14.730 -2.027 -2.411 1.800 -3.583 D 95 93 3 96 3 0 0 12 30 -12.759 -8.272 -0.005 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - + - ML 97 96 3 99 3 1 1 9 28 -16.076 -0.117 -3.678 -0.129 -4.118 1.399 -1.358 D 98 96 3 99 3 0 0 11 29 -12.759 -8.272 -0.005 IL 99 99 3 99 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 8 14 -0.131 -3.527 -14.613 -0.528 -0.691 -4.071 1.394 D 101 99 3 102 3 0 0 6 11 -4.779 -0.057 -8.774 IL 102 102 3 102 3 1 1 7 13 -4.509 -0.065 -13.294 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.589 -3.763 -2.215 1.142 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - + - ML 109 108 2 111 5 1 1 26 45 -5.685 -0.028 -14.877 -15.089 -15.981 0.328 -5.821 1.309 -2.004 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -6.280 -0.029 -7.959 -9.791 -9.065 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 50 u a = = MP 112 111 3 116 6 2 2 25 44 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -10.300 -10.001 -10.300 -0.511 -6.898 -11.143 2.573 -6.904 -10.158 -2.673 -10.671 -0.956 2.951 -10.482 -0.783 -1.544 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 49 U A = = MP 118 117 6 122 6 2 2 23 42 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.044 -13.323 -12.364 -0.225 -10.715 -12.509 1.130 -11.630 -12.467 -9.529 -12.587 -11.719 3.626 -12.880 -0.812 -4.654 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 48 U A = = MP 124 123 6 128 6 2 2 21 40 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.933 -12.818 -12.354 -9.081 -10.829 -12.617 -6.539 -11.674 -12.400 -9.172 -12.578 -0.535 3.878 -12.926 -0.759 -11.229 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 47 A U = = MP 130 129 6 134 6 2 2 19 38 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -4.369 -10.698 -12.233 3.871 -14.373 -15.529 -9.831 -12.276 -11.794 -0.843 -12.463 -3.858 -0.534 -13.539 -11.662 -10.832 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 46 G C = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -12.178 -10.679 -12.415 -0.139 -14.480 -14.119 -9.834 -12.452 -11.809 3.788 -12.414 0.220 -9.807 -13.277 -11.729 -3.238 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.128 -0.000 -14.782 -11.597 1.932 -12.068 -2.436 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -12.797 -5.328 -13.995 1.991 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - U - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 1.956 -11.839 -3.075 -11.314 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.899 -11.672 -11.571 -1.892 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 51 77 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 6 53 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 6 51 77 -16.128 -0.000 -14.782 1.378 -4.456 -0.728 -0.411 D 167 165 2 168 3 0 4 49 75 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - U - + - ML 169 168 3 171 2 1 5 50 76 -16.784 -0.000 -1.693 -4.116 0.580 1.096 D 170 168 3 171 2 0 4 49 75 -8.445 -0.004 IL 171 171 3 171 2 1 5 50 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 49 75 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 53 70 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 69 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 68 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 67 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 66 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 65 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 64 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.432 -15.113 -13.129 -0.000 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - a - + - ML 216 215 6 218 3 1 1 16 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -17.545 -3.499 -0.134 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - A - + - ML 219 218 3 221 3 1 1 11 30 -12.653 -0.238 -2.720 1.526 -6.437 -6.951 0.139 D 220 218 3 221 3 0 0 7 25 -17.412 -12.925 -0.000 IL 221 221 3 221 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - A - + - ML 222 221 3 224 3 1 1 10 28 -12.416 -0.227 -2.782 1.536 -6.093 -6.573 0.104 D 223 221 3 224 3 0 0 5 24 -17.433 -12.946 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - U - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -8.558 -7.647 -9.652 1.997 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 38 64 -16.128 -0.133 -3.502 IL 230 230 2 230 3 1 5 40 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - U - + - ML 231 230 2 233 3 1 5 38 65 -0.010 -7.173 -14.649 -1.838 -2.700 -1.315 1.662 D 232 230 2 233 3 0 3 37 63 -1.844 -0.477 -8.442 IL 233 233 3 233 3 1 4 37 64 -4.538 -0.064 -13.482 0.000 0.000 0.000 0.000 [ MATL 62 ] 74 - U - + - ML 234 233 3 236 5 1 3 36 62 -15.062 -0.065 -14.877 -4.507 -15.981 -1.474 0.116 -9.580 1.353 D 235 233 3 236 5 0 0 35 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 36 63 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 75 97 G C = = MP 237 236 3 241 6 2 7 35 62 -15.931 -5.862 -0.025 -14.647 -14.927 -15.322 -12.812 -10.544 -13.374 1.318 -14.905 -12.313 -9.781 -13.356 -11.805 3.588 -12.178 0.563 -9.953 -12.517 -11.951 -12.009 ML 238 236 3 241 6 1 1 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 2 29 56 -12.915 -11.644 -5.322 -11.623 -0.039 -9.836 -7.134 1.991 -7.596 -6.184 D 240 236 3 241 6 0 0 30 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 34 60 -6.063 -0.034 -9.574 -7.742 -8.848 0.000 0.000 0.000 0.000 [ MATP 64 ] 76 95 u a = = MP 243 242 6 247 6 2 7 33 59 -15.933 -15.872 -0.000 -14.648 -14.928 -15.323 -10.823 -10.537 -10.757 -0.128 -9.565 -11.508 0.693 -10.247 -10.638 -3.168 -11.107 -2.372 2.799 -10.988 1.011 2.065 ML 244 242 6 247 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 26 53 -12.887 -11.616 -7.525 -11.594 -6.728 -0.023 -6.296 -8.054 1.991 -7.055 D 246 242 6 247 6 0 0 28 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 32 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 77 94 G C = = MP 249 248 6 253 6 2 6 31 57 -6.348 -15.872 -0.018 -14.648 -14.928 -15.323 -12.274 -10.596 -12.568 2.692 -14.535 -13.341 -9.774 -12.596 -11.762 3.222 -3.687 -2.994 -9.798 -12.988 -11.739 -11.175 ML 250 248 6 253 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 29 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 24 51 -15.492 -14.190 -9.987 -10.669 -10.687 -0.003 IL 253 253 5 253 6 1 2 30 56 -6.452 -6.715 -0.041 -8.370 -9.146 -8.806 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 30 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 79 93 G C = = MP 255 254 6 259 6 2 5 29 55 -15.933 -15.872 -0.000 -14.648 -14.928 -15.323 -13.728 -1.204 -15.552 -1.484 -15.431 -11.702 -9.791 -15.204 -11.854 3.925 -12.062 -5.829 -10.137 -12.152 -12.213 -14.435 ML 256 254 6 259 6 1 1 28 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 28 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 24 50 -15.492 -14.190 -9.987 -10.669 -10.687 -0.003 IL 259 259 5 259 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 80 92 G C = = MP 261 260 6 265 4 2 3 27 53 -15.155 -15.362 -0.003 -8.871 -13.841 -1.268 -16.063 -3.072 -15.486 -11.661 -9.792 -15.562 -11.858 3.941 -3.268 -8.418 -10.153 -12.125 -12.238 -15.102 ML 262 260 6 265 4 1 1 27 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 26 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 24 50 -10.915 -10.596 -8.612 -0.005 IL 265 265 5 265 4 1 1 28 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 81 - A - + - ML 267 266 6 269 3 1 1 25 51 -4.610 -0.060 -14.716 1.701 -9.773 -1.515 -1.328 D 268 266 6 269 3 0 0 24 50 -13.087 -0.008 -7.479 IL 269 269 3 269 3 1 1 25 51 -6.198 -0.331 -2.387 0.000 0.000 0.000 0.000 [ MATL 69 ] 83 - U - + - ML 270 269 3 272 3 1 1 24 50 -16.117 -0.000 -14.771 -1.544 -5.808 -1.466 1.712 D 271 269 3 272 3 0 0 23 49 -10.591 -0.047 -4.983 IL 272 272 3 272 3 1 1 25 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 84 - C - + - ML 273 272 3 275 3 1 1 23 49 -16.128 -0.000 -14.782 -0.373 1.361 -2.677 -0.993 D 274 272 3 275 3 0 0 21 48 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 24 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 85 - G - + - ML 276 275 3 278 3 1 1 22 48 -5.991 -0.023 -14.782 0.362 -5.696 1.408 -4.570 D 277 275 3 278 3 0 0 20 46 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 22 48 -4.961 -0.054 -7.661 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 21 47 -16.128 -0.000 -14.782 1.808 -9.730 -2.510 -1.639 D 280 278 3 281 3 0 0 19 46 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 22 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - G - + - ML 282 281 3 284 3 1 1 20 46 -5.415 -0.053 -6.273 0.158 -1.777 1.288 -2.731 D 283 281 3 284 3 0 0 18 45 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 24 51 -1.012 -0.993 -9.151 0.000 0.000 0.000 0.000 [ MATL 74 ] 91 - G - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.215 -1.428 1.544 -1.008 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Asn LENG 90 MAXL 167 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:49 2015 COM [1] cmbuild --hand --enone Asn-final-vert.cm ../Asn-2nd-align.sto NSEQ 1086 EFFN 8.380806 CKSUM 21435537 STATS LOCAL MSV -9.2157 0.71869 STATS LOCAL VITERBI -9.3781 0.71869 STATS LOCAL FORWARD -3.9068 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39435 1.61217 1.30129 1.27164 1.38629 1.38629 1.38629 1.38629 0.03125 4.74498 3.81350 1.46634 0.26236 0.00000 * 1 4.68877 3.90032 4.53283 0.04101 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01778 4.73151 4.73151 1.46634 0.26236 0.58107 0.81939 2 0.14496 4.50896 2.21983 4.17959 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 3 1.85325 2.78653 0.38442 2.29467 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 4 0.71520 2.75365 1.01854 2.45237 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 5 2.14411 1.28691 2.26951 0.68648 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 6 1.48475 1.80908 1.29337 1.09276 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02807 3.96409 4.74498 0.75210 0.63747 1.09861 0.40547 7 1.57956 2.94691 0.40238 2.62135 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02874 4.74498 3.93033 1.46634 0.26236 1.09861 0.40547 8 0.18955 2.86319 2.94618 2.76400 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.01877 4.73397 4.62531 1.46634 0.26236 0.63424 0.75574 9 0.54545 2.59117 2.35817 1.38272 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.07576 2.74488 4.74398 0.25187 1.50212 1.02750 0.44301 10 2.06356 2.50481 0.32961 2.62962 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 11 4.09978 0.17525 3.95748 2.07894 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.74498 4.31625 1.46634 0.26236 1.09861 0.40547 12 3.30232 0.66257 3.07026 0.91312 14 C = - < 1.38629 1.38629 1.38629 1.38629 0.01763 4.74031 4.74031 1.46634 0.26236 0.83407 0.56965 13 1.36131 1.15840 1.75912 1.35677 15 c = - < 1.38629 1.38629 1.38629 1.38629 0.04775 4.74498 3.27197 1.46634 0.26236 1.09861 0.40547 14 1.76823 3.33159 0.32229 2.67163 16 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01808 4.71530 4.71530 1.46634 0.26236 1.85039 0.17100 15 1.72410 1.00277 2.42876 1.00332 17 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02353 4.71530 4.24740 1.46634 0.26236 1.85039 0.17100 16 2.04360 2.49972 2.74971 0.32243 18 U + - _ 1.38629 1.38629 1.38629 1.38629 1.48478 4.70994 0.26861 1.46634 0.26236 1.94003 0.15513 17 1.19309 1.76078 1.57916 1.14363 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.18661 2.01435 3.30166 0.70889 0.67765 0.06055 2.83438 18 2.21437 2.76262 0.27015 2.74289 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01807 4.71552 4.71552 1.46634 0.26236 1.84652 0.17172 19 1.46848 2.75557 0.55793 2.01170 23 G + - _ 1.38629 1.38629 1.38629 1.38629 0.08417 4.71552 2.63423 1.46634 0.26236 1.52608 0.24512 20 1.61779 1.74334 2.59971 0.59342 24 U + - _ 1.38629 1.38629 1.38629 1.38629 1.34345 0.31535 4.65425 0.06898 2.70830 0.16741 1.86986 21 1.09144 2.33318 2.22878 0.77735 27 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 22 1.57350 1.91003 0.82959 1.56841 28 g = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 23 1.35457 3.23221 0.42300 3.04933 29 G = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 24 2.27993 4.08947 0.15149 3.83809 30 G = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 25 2.91436 0.63667 2.57394 1.07742 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 26 1.23548 2.95295 0.59727 2.23672 32 G + - , 1.38629 1.38629 1.38629 1.38629 0.03368 3.71202 4.74498 0.60437 0.79058 1.09861 0.40547 27 2.24727 1.05626 2.05260 0.87189 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 28 2.47834 1.49496 2.72519 0.46788 35 U = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 29 3.80453 2.72837 3.06604 0.14410 36 U = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 30 0.19244 3.98589 2.26942 2.93549 37 A = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 31 2.03502 3.13520 0.26059 2.89611 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 32 4.04673 0.09327 4.54208 2.79822 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 33 3.89885 3.52952 4.42979 0.06347 40 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 34 4.17069 5.21046 0.03065 4.67963 41 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 35 4.16573 3.91760 4.71818 0.04535 42 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 36 4.16573 3.91760 4.71818 0.04535 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 37 0.07219 4.23263 3.25781 4.09465 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 38 0.12048 3.67492 3.69411 2.76008 45 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 39 3.22366 0.35610 2.94016 1.57538 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 40 2.97509 2.54563 3.78116 0.16518 47 U = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 41 0.17890 3.79314 2.37223 3.03623 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 42 0.55179 2.90341 1.30913 2.31069 49 A = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 43 1.03000 2.34447 0.92819 1.88500 50 g = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 44 0.61646 2.49793 1.82316 1.53074 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 45 1.79793 2.41396 1.20982 0.80599 52 u + - , 1.38629 1.38629 1.38629 1.38629 1.74924 4.74498 0.20163 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 47 1.80293 1.30596 1.07732 1.49717 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 48 1.80052 1.30669 1.07821 1.49668 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 49 1.79944 1.30703 1.07862 1.49647 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 50 1.79901 1.30716 1.07878 1.49638 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 51 1.79889 1.30719 1.07882 1.49636 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 52 1.79893 1.30718 1.07881 1.49636 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 53 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.34330 0.10094 54 0.82887 1.90707 1.92702 1.31170 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11445 3.40842 2.58965 1.46634 0.26236 4.47492 0.01146 55 0.84150 1.88893 1.89818 1.31728 62 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11057 3.36556 2.65730 1.46634 0.26236 4.48926 0.01129 56 1.65074 1.81508 2.09561 0.64957 63 U + - _ 1.38629 1.38629 1.38629 1.38629 0.33358 3.32932 1.39501 1.46634 0.26236 4.50076 0.01116 57 1.73020 1.22023 1.16212 1.53820 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 58 1.73013 1.22026 1.16215 1.53817 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 59 1.73014 1.22026 1.16215 1.53818 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 60 1.73030 1.22019 1.16209 1.53823 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 61 1.73075 1.22000 1.16193 1.53836 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 62 1.73169 1.21959 1.16158 1.53863 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.56440 0.01047 63 1.73350 1.21882 1.16092 1.53917 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08609 2.49510 64 2.09674 2.39625 2.26060 0.38302 71 U + - , 1.38629 1.38629 1.38629 1.38629 1.62575 0.23059 4.69213 0.05178 2.98646 0.25390 1.49507 65 2.02247 1.37142 3.02721 0.57009 74 U + - , 1.38629 1.38629 1.38629 1.38629 0.05446 4.74498 3.11654 1.46634 0.26236 1.09861 0.40547 66 1.81828 3.42259 0.26568 3.26013 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.01820 4.70871 4.70871 1.46634 0.26236 1.88076 0.16543 67 2.05785 1.51477 2.03935 0.64952 76 U = - < 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 68 1.16601 3.16933 0.51624 3.00369 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.02832 3.96814 4.70945 0.77812 0.61483 1.94790 0.15382 69 2.76249 4.25526 0.09770 4.15066 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 70 2.86928 4.12709 0.09515 4.02333 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.70945 4.54051 1.46634 0.26236 1.94790 0.15382 71 0.33329 2.95929 2.22988 2.08717 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04547 3.34016 4.70779 0.44930 1.01632 0.32553 1.28066 72 2.12979 2.75782 2.37584 0.32190 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 73 1.57234 0.67233 2.56335 1.58533 84 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 74 1.18515 3.25085 0.51230 2.87457 85 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03058 3.84326 4.74498 0.67756 0.70898 1.09861 0.40547 75 0.22970 3.18591 2.67194 2.35633 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 76 1.32805 2.33534 0.63377 2.22896 88 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04795 3.58729 3.95590 0.91754 0.50999 1.09861 0.40547 77 2.07276 2.26431 0.47074 1.92607 91 G + - _ 1.38629 1.38629 1.38629 1.38629 0.05429 4.73447 3.12225 1.46634 0.26236 0.64633 0.74226 78 4.13768 0.10154 3.78893 2.84776 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 79 4.19632 0.10110 4.05046 2.75364 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 1.94790 0.15382 80 3.19242 0.58347 2.89976 1.06151 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.01818 4.70945 4.70945 1.46634 0.26236 0.33568 1.25475 81 1.12753 2.24709 1.17033 1.34633 95 a = - > 1.38629 1.38629 1.38629 1.38629 0.03125 3.81350 4.74498 0.66029 0.72713 1.09861 0.40547 82 3.31336 0.38266 3.16006 1.43071 97 C = - > 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 83 2.83746 0.46829 2.73085 1.38553 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 84 1.29640 1.49072 1.54008 1.24858 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 85 0.88643 2.44332 1.01767 1.96918 100 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 86 2.89451 1.28880 2.55474 0.52533 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 87 2.90414 0.44288 2.37324 1.56140 102 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 88 4.05249 2.70373 4.27874 0.10336 103 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01754 4.74498 4.74498 1.46634 0.26236 1.09861 0.40547 89 0.04673 4.64526 3.78358 4.31923 104 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03739 4.74498 3.57544 1.46634 0.26236 1.09861 0.40547 90 2.79495 3.56721 0.17771 2.61094 105 G + - : 1.38629 1.38629 1.38629 1.38629 0.00899 4.71657 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Asp STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Asp-final-vert.cm ../Asp-2nd-align.sto COM [2] cmcalibrate --seed 208 Asp-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1087 EFFN 1087.000000 CKSUM 2994548020 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.2968 0.71862 ECMLC 0.64583 -6.50074 3.09444 1600000 589460 0.002036 ECMGC 0.30246 -41.21396 -25.15860 1600000 51413 0.007780 ECMLI 0.64636 -5.95003 3.51525 1600000 544719 0.002203 ECMGI 0.31093 -37.94886 -22.49717 1600000 48820 0.008193 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 130 -15.014 -16.260 -0.000 -12.713 IL 1 1 2 1 4 14 36 103 132 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 37 104 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 103 - A - + MR 3 2 3 5 5 21 44 102 130 -15.063 -0.000 -14.879 -15.091 -15.982 1.216 -1.788 -0.883 -0.243 D 4 2 3 5 5 11 34 101 129 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 14 36 102 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 102 A U = = MP 6 5 3 10 6 22 43 101 129 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -4.383 -4.730 -9.888 3.079 -11.031 -4.683 -6.100 -4.449 -10.306 2.413 -10.564 0.791 -2.031 -9.757 -8.106 -4.208 ML 7 5 3 10 6 13 35 99 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 35 99 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 31 97 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 13 36 101 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 14 36 100 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 101 A U = = MP 12 11 6 16 6 21 42 99 127 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -12.039 -2.895 -12.235 3.854 -3.420 -15.529 -9.831 -12.277 -11.795 0.013 -12.465 -4.343 -2.780 -13.540 -11.662 -3.188 ML 13 11 6 16 6 12 35 97 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 12 35 97 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 31 95 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 13 36 99 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 13 36 98 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 100 G C = = MP 18 17 6 22 6 20 40 97 125 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -13.042 -1.532 -13.645 0.982 -14.295 -3.726 -9.007 -14.066 -11.745 3.709 -11.945 -1.423 -3.183 -4.786 -11.230 -12.632 ML 19 17 6 22 6 12 35 95 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 34 95 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 30 93 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 13 35 97 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 13 36 96 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 99 A U = = MP 24 23 6 28 6 18 38 95 123 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -1.546 0.092 -9.830 3.203 -10.966 -3.979 -1.908 -4.679 -5.750 2.141 -10.511 -1.286 -6.298 -9.691 -8.041 -2.657 ML 25 23 6 28 6 12 34 93 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 34 93 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 30 91 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 35 95 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 35 94 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 98 u a = = MP 30 29 6 34 6 16 36 93 121 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -3.114 -3.981 -9.333 -0.294 0.093 -6.317 2.602 -3.568 -5.979 -1.952 -9.850 -7.233 2.746 -5.460 -1.261 -1.558 ML 31 29 6 34 6 12 33 92 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 33 91 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 29 89 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 34 93 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 34 92 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 97 A U = = MP 36 35 6 40 6 14 34 91 119 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -9.180 -2.471 -3.727 3.018 -1.701 -6.209 1.118 -6.869 -9.430 1.890 -9.837 -2.835 -0.405 -3.648 -5.311 -1.219 ML 37 35 6 40 6 11 32 90 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 31 90 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 29 88 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 33 91 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 33 90 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 96 U A = = MP 42 41 6 46 4 12 32 89 117 -15.220 -15.427 -0.000 -13.841 -13.049 -13.330 -12.366 -9.566 -10.717 -5.018 2.778 -11.632 -12.470 -9.538 -3.608 -11.734 3.132 -4.885 -2.953 -3.439 ML 43 41 6 46 4 10 31 89 117 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 30 88 116 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 29 87 115 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 32 90 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 31 89 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 10 30 87 115 -16.130 -0.000 -14.784 -12.779 -5.229 -13.968 1.990 D 49 47 6 50 3 9 28 86 114 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 30 88 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 9 29 86 114 -5.971 -0.023 1.976 -11.958 -3.963 -11.363 D 52 50 3 53 2 8 28 85 113 -8.445 -0.004 IL 53 53 3 53 2 9 29 86 114 -6.110 -0.021 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 28 85 113 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 49 67 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 49 67 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 31 49 -0.000 -14.125 -13.532 -14.172 [ MATP 15 ] 11 31 G C = = MP 58 57 1 62 6 2 3 31 49 -15.997 -15.937 -0.023 -14.713 -5.977 -15.388 -13.730 -10.562 -15.381 -2.174 -15.464 -11.792 -9.855 -15.091 -11.916 3.920 -12.132 -0.652 -10.191 -12.233 -12.264 -14.213 ML 59 57 1 62 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 U A = = MP 64 63 6 68 6 2 3 29 47 -15.974 -15.913 -0.000 -14.690 -14.970 -15.365 -13.019 -13.273 -12.343 -1.571 -3.851 -12.494 -6.412 -11.612 -12.443 -9.492 -12.567 -11.629 3.936 -12.863 -1.857 -11.247 ML 65 63 6 68 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 28 46 -11.493 -10.222 -0.044 -10.200 -5.334 -8.414 1.982 -6.258 -5.647 -5.859 D 67 63 6 68 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 29 A U = = MP 70 69 6 74 6 2 3 27 45 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -1.706 -2.507 -4.887 3.843 -14.224 -15.436 -3.212 -12.269 -11.800 -1.538 -12.466 -7.998 -0.801 -13.532 -11.552 -3.281 ML 71 69 6 74 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 24 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 28 A U = = MP 76 75 6 80 4 2 3 25 43 -15.220 -15.427 -0.000 -13.841 -3.034 -2.683 -4.485 3.855 -13.964 -4.822 -9.484 -2.883 -3.679 -2.296 -12.466 -8.023 -2.179 -4.596 -4.530 -1.156 ML 77 75 6 80 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 23 41 -16.130 -0.001 -11.143 1.908 -4.254 -9.891 -2.376 D 83 81 6 84 3 0 0 21 40 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 22 40 -16.129 -0.144 -3.398 1.642 -1.495 -2.412 -1.569 D 86 84 3 87 3 0 0 20 39 -7.230 -2.743 -0.245 IL 87 87 3 87 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - u - + - ML 88 87 3 90 3 1 1 21 39 -15.985 -0.880 -1.131 -0.282 0.576 -5.465 0.735 D 89 87 3 90 3 0 0 19 38 -14.162 -9.675 -0.002 IL 90 90 3 90 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 20 38 -4.569 -2.491 -0.358 0.318 -0.114 -8.344 0.869 D 92 90 3 93 3 0 0 19 38 -16.573 -1.140 -0.873 IL 93 93 3 93 3 1 1 21 39 -5.329 -0.042 -8.029 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 20 38 -14.569 -0.009 -7.396 1.117 -1.251 0.283 -2.369 D 95 93 3 96 3 0 0 17 36 -16.952 -2.220 -0.349 IL 96 96 3 96 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - g - + - ML 97 96 3 99 3 1 1 19 37 -15.067 -0.463 -1.865 0.495 -1.389 0.783 -1.035 D 98 96 3 99 3 0 0 14 32 -16.610 -8.029 -0.006 IL 99 99 3 99 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - u - + - ML 100 99 3 102 3 1 1 18 37 -0.593 -1.569 -13.266 -0.387 0.661 -7.802 0.722 D 101 99 3 102 3 0 0 14 32 -5.821 -0.026 -11.321 IL 102 102 3 102 3 1 1 18 36 -1.438 -0.665 -12.152 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.925 -3.218 -5.919 -3.652 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.130 -0.000 -14.784 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - A - + - ML 109 108 2 111 5 1 1 26 45 -15.063 -0.000 -14.879 -15.091 -15.982 1.809 -2.273 -2.199 -3.826 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 50 U A = = MP 112 111 3 116 6 2 2 25 44 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -1.848 -5.092 -6.361 -0.600 -0.058 -11.133 2.013 -4.227 -10.148 -2.233 -10.662 -4.309 3.261 -10.471 -3.735 -4.526 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 49 a u = = MP 118 117 6 122 6 2 2 23 42 -15.997 -6.172 -0.020 -14.713 -14.993 -15.388 -6.789 -9.665 -4.030 2.774 -3.678 -4.326 0.673 -9.613 -9.818 0.575 -10.344 -1.298 2.403 -10.067 -3.184 -3.987 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 22 41 -5.839 -0.039 -9.350 -7.518 -8.624 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 47 G C = = MP 124 123 6 128 6 2 2 21 40 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -3.172 -1.214 -9.784 2.535 -10.915 -4.114 -1.945 -10.475 -10.223 3.169 -10.469 -4.655 -2.627 -4.335 -3.405 -8.750 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 46 C G = = MP 130 129 6 134 6 2 2 19 38 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -2.081 -12.884 -4.980 -8.986 0.335 -4.307 3.680 -4.072 -5.088 -3.120 -12.438 -10.986 0.120 -12.655 -1.716 -11.044 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 45 C G = = MP 136 135 6 140 4 2 2 17 35 -15.220 -15.427 -0.000 -13.841 -12.893 -3.714 -4.326 -9.249 0.633 -4.261 3.058 -1.739 -12.360 -9.174 -12.512 -11.314 1.552 -1.375 1.113 -2.673 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.130 -0.000 -14.784 -12.181 -0.566 -13.180 1.733 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.130 -0.000 -14.784 -9.145 -3.325 -5.663 1.956 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.130 -0.000 -14.784 -5.261 -12.433 1.990 -11.406 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.130 -0.000 -14.784 -12.453 -3.754 -13.525 1.973 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.130 -0.000 -14.784 -12.736 2.000 -13.624 -11.113 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.130 -0.000 -14.784 1.856 -5.856 -1.466 -10.602 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.558 -5.254 -0.485 -1.669 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 51 80 -16.130 -0.000 -14.784 IL 165 165 2 165 3 1 3 54 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 2 51 80 -16.130 -0.000 -14.784 1.944 -5.146 -5.008 -3.439 D 167 165 2 168 3 0 0 50 78 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 53 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - A - + - ML 169 168 3 171 2 1 1 50 79 -16.785 -0.000 1.696 -5.313 -0.576 -3.952 D 170 168 3 171 2 0 0 49 78 -8.445 -0.004 IL 171 171 3 171 2 1 1 51 79 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 49 78 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.821 -14.125 -13.532 -0.007 [ MATP 48 ] 53 70 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 69 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 68 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 67 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 66 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 65 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 64 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.433 -15.115 -4.259 -0.077 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - U - + - ML 216 215 6 218 3 1 1 13 32 -11.912 -0.001 -10.566 -8.103 -7.267 -9.144 1.996 D 217 215 6 218 3 0 0 8 26 -17.469 -12.982 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.912 -0.001 -10.566 -8.103 -7.267 -9.144 1.996 D 220 218 3 221 3 0 0 7 25 -17.469 -12.982 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - A - + - ML 222 221 3 224 3 1 1 10 29 -11.912 -0.001 -10.566 1.994 -8.039 -7.309 -7.444 D 223 221 3 224 3 0 0 5 24 -17.469 -12.982 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - C - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -7.411 1.992 -7.882 -6.439 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 40 68 -16.130 -0.044 -5.070 IL 230 230 2 230 3 1 1 42 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - U - + - ML 231 230 2 233 3 1 4 40 68 -4.179 -0.082 -14.740 -1.373 -8.739 -3.875 1.825 D 232 230 2 233 3 0 0 39 68 -0.264 -8.008 -2.615 IL 233 233 3 233 3 1 1 40 68 -7.181 -0.012 -9.881 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - U - + - ML 234 233 3 236 5 1 4 39 67 -15.057 -0.000 -14.872 -15.084 -15.976 -1.450 -0.404 -9.629 1.524 D 235 233 3 236 5 0 0 34 62 -7.952 -3.796 -7.214 -5.588 -0.158 IL 236 236 3 236 5 1 1 39 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 74 95 A U = = MP 237 236 3 241 6 2 5 38 66 -15.991 -15.930 -0.000 -14.706 -14.986 -15.381 -12.042 -5.896 -12.241 3.251 -14.376 -15.356 -9.827 -12.283 -11.789 2.517 -12.454 -0.440 -9.755 -13.512 -11.662 -10.839 ML 238 236 3 241 6 1 1 36 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 36 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 58 -12.415 -11.113 -6.910 -7.592 -7.609 -0.028 IL 241 241 5 241 6 1 1 37 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 37 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 75 94 c g = = MP 243 242 6 247 6 2 4 36 64 -15.991 -15.930 -0.000 -14.706 -14.986 -15.381 -13.030 -13.304 -12.353 -2.484 -4.842 -12.501 2.795 -11.620 -12.455 -9.500 -12.577 -11.690 2.059 -12.867 1.762 0.360 ML 244 242 6 247 6 1 1 34 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 34 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 56 -12.415 -11.113 -6.910 -7.592 -7.609 -0.028 IL 247 247 5 247 6 1 1 35 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 35 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 76 93 A U = = MP 249 248 6 253 6 2 2 34 62 -15.991 -15.930 -0.100 -14.706 -14.986 -3.901 -3.313 -1.755 -9.801 3.287 -10.934 -10.401 -2.369 -10.488 -10.235 2.239 -10.484 -3.085 -2.315 -9.658 -3.603 -0.949 ML 250 248 6 253 6 1 1 32 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 32 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 27 55 -12.415 -11.113 -6.910 -7.592 -7.609 -0.028 IL 253 253 5 253 6 1 1 33 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 33 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 77 92 G C = = MP 255 254 6 259 6 2 2 32 60 -15.891 -15.830 -0.031 -14.606 -6.763 -6.388 -2.491 -0.718 -13.310 1.194 -14.855 -12.288 -9.740 -13.294 -11.763 3.691 -12.139 -8.156 -9.909 -12.485 -11.905 -11.944 ML 256 254 6 259 6 1 1 30 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 30 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 27 55 -16.219 -14.918 -10.715 -11.397 -11.414 -0.002 IL 259 259 5 259 6 1 1 31 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 31 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 78 91 G C = = MP 261 260 6 265 4 2 2 30 58 -15.082 -15.289 -0.039 -5.248 -12.398 -1.889 -4.094 -0.686 -14.553 -12.687 -2.739 -12.798 -11.699 3.895 -12.159 -5.747 -9.736 -12.642 -11.690 -11.395 ML 262 260 6 265 4 1 1 29 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 28 56 -8.662 -7.691 -5.558 -0.042 0.604 1.009 -2.780 -1.635 D 264 260 6 265 4 0 0 27 55 -11.849 -11.530 -6.470 -0.017 IL 265 265 5 265 4 1 1 30 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 30 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 2 28 56 -4.162 -0.083 -14.609 -2.039 -1.694 -5.752 1.778 D 268 266 6 269 3 0 0 27 55 -14.424 -0.114 -3.716 IL 269 269 3 269 3 1 1 28 56 -6.528 -0.018 -9.228 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - U - + - ML 270 269 3 272 3 1 1 27 55 -16.117 -0.011 -7.007 -3.199 -1.831 -0.538 1.547 D 271 269 3 272 3 0 0 25 54 -10.728 -0.244 -2.687 IL 272 272 3 272 3 1 1 28 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - A - + - ML 273 272 3 275 3 1 1 26 54 -16.117 -0.000 -14.771 1.395 -0.575 -2.554 -0.919 D 274 272 3 275 3 0 0 25 53 -10.780 -0.041 -5.171 IL 275 275 3 275 3 1 1 27 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - ML 276 275 3 278 3 1 1 25 53 -5.519 -0.059 -5.786 1.697 -2.946 -0.960 -3.142 D 277 275 3 278 3 0 0 22 51 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 25 53 -5.399 -0.040 -8.099 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 24 52 -16.103 -0.000 -14.757 1.887 -2.471 -5.195 -3.436 D 280 278 3 281 3 0 0 19 48 -11.789 -3.285 -0.157 IL 281 281 3 281 3 1 1 25 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - a - + - ML 282 281 3 284 3 1 1 23 51 -4.491 -0.142 -4.351 0.628 0.517 -1.389 -0.640 D 283 281 3 284 3 0 0 14 42 -11.643 -3.761 -0.111 IL 284 284 3 284 3 1 1 26 55 -0.934 -1.072 -10.108 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.225 1.466 -4.301 -0.041 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Asp LENG 90 MAXL 163 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Asp-final-vert.cm ../Asp-2nd-align.sto NSEQ 1087 EFFN 10.801830 CKSUM 2994548020 STATS LOCAL MSV -8.8747 0.71862 STATS LOCAL VITERBI -9.3740 0.71862 STATS LOCAL FORWARD -3.2512 0.71862 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16479 1.60570 1.62022 1.23992 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 0.00000 * 1 1.00148 2.81567 0.69844 2.58440 1 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 2 0.11533 4.06644 2.67028 3.79177 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 3 1.76488 2.96743 0.33435 2.78787 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 4 0.86261 2.49157 0.90734 2.39071 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 5 1.96600 1.04568 2.03920 0.97181 5 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 6 1.07446 1.63790 1.30673 1.64287 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 7 2.81420 0.92819 2.52180 0.76687 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 8 4.13295 3.69080 4.66298 0.05174 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 9 0.04343 4.69005 3.78392 4.54902 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02813 3.88282 4.94143 0.59094 0.80700 1.09861 0.40547 10 3.38773 4.76530 0.05283 4.69416 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02813 4.94143 3.88282 1.46634 0.26236 1.09861 0.40547 11 4.38989 3.55645 4.97810 0.04901 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01459 4.92789 4.92789 1.46634 0.26236 0.52702 0.89248 12 0.14467 3.62082 2.71341 3.17918 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 13 0.01268 5.57618 5.45885 5.39193 14 A = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 14 0.12230 3.38024 3.74999 2.85486 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.94143 4.89450 1.46634 0.26236 1.09861 0.40547 15 0.36616 2.23557 2.57410 2.09187 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09912 4.94109 2.43938 1.46634 0.26236 1.11450 0.39761 16 1.51120 1.09564 2.76758 0.96177 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.50204 4.85763 0.94949 1.46634 0.26236 2.65685 0.07275 17 1.23544 1.48685 2.39218 0.93706 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.97504 3.14372 0.54524 0.50477 0.92545 0.80246 0.59462 18 0.85851 1.93646 1.39412 1.69314 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03678 4.12473 3.91480 1.46634 0.26236 1.51897 0.24710 19 1.13025 1.96653 1.11625 1.56256 21 g + - _ 1.38629 1.38629 1.38629 1.38629 0.23474 4.36154 1.62728 1.46634 0.26236 3.79257 0.02280 20 1.47168 1.17734 2.37299 0.99652 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.62771 0.79703 4.16566 0.49015 0.94813 0.02580 3.67040 21 0.11687 3.16770 3.60847 3.19153 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 22 5.50600 5.64057 5.38583 0.01227 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 23 3.20365 2.82144 3.40342 0.14317 29 U = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 24 0.06489 4.92270 3.24352 4.10290 30 A = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 25 4.73849 0.09121 4.59261 2.68388 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 26 0.21629 2.67400 2.64651 2.90731 32 A + - , 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 27 2.10369 1.17577 2.14876 0.79234 33 u = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 28 1.20464 1.62100 1.68999 1.14577 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 29 1.20235 2.72340 0.58133 2.59418 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 30 2.40524 0.50201 2.26867 1.60449 36 C = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 31 2.01553 0.89905 2.00625 1.12301 37 c = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 32 3.50391 1.85070 4.03563 0.22926 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 33 3.46133 2.98484 3.81552 0.10977 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 34 4.07215 5.38763 0.02989 4.84979 40 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 35 3.89868 3.27129 4.41518 0.07291 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 36 4.83169 0.02891 5.19951 4.19952 42 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 37 0.15200 3.81818 2.33297 3.81513 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 38 0.40910 2.99432 1.75913 2.17606 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 39 1.34696 2.06962 0.79985 1.80582 45 g = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 40 1.57182 2.43064 0.50875 2.27200 46 G = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 41 2.84504 0.60955 2.54168 1.14088 47 C = - > 1.38629 1.38629 1.38629 1.38629 0.02638 3.96886 4.94143 0.63709 0.75253 1.09861 0.40547 42 1.26656 1.86518 1.47017 1.09827 49 u = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 43 0.79352 2.31857 1.16620 1.98204 50 a = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 44 0.09166 3.68133 3.63067 3.32703 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 45 0.27919 3.40427 1.80749 3.07238 52 A + - , 1.38629 1.38629 1.38629 1.38629 1.94570 4.94143 0.16256 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 47 1.80287 1.30597 1.07734 1.49716 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 48 1.80042 1.30672 1.07825 1.49666 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 49 1.79932 1.30707 1.07867 1.49644 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 50 1.79887 1.30720 1.07883 1.49635 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 51 1.79874 1.30724 1.07888 1.49632 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 52 1.79876 1.30724 1.07887 1.49633 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.82844 0.06092 53 1.66984 1.82810 2.11688 0.63375 60 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07370 3.33755 3.33755 1.46634 0.26236 4.74337 0.00875 54 1.66984 1.82810 2.11688 0.63375 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07370 3.33755 3.33755 1.46634 0.26236 4.74337 0.00875 55 0.52759 2.18764 2.00872 1.81011 62 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07370 3.33755 3.33755 1.46634 0.26236 4.74337 0.00875 56 1.65586 0.77263 2.16422 1.45914 63 c + - _ 1.38629 1.38629 1.38629 1.38629 0.34181 3.33755 1.37044 1.46634 0.26236 4.74337 0.00875 57 1.73004 1.22030 1.16218 1.53815 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 58 1.72998 1.22033 1.16221 1.53813 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 59 1.73000 1.22032 1.16220 1.53814 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 60 1.73019 1.22024 1.16213 1.53819 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 61 1.73066 1.22004 1.16196 1.53833 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 62 1.73163 1.21962 1.16160 1.53862 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 63 1.73350 1.21882 1.16092 1.53917 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02131 3.85924 64 2.30182 3.15839 3.32408 0.19672 71 U + - , 1.38629 1.38629 1.38629 1.38629 0.06159 2.94584 4.93749 0.25363 1.49600 1.26710 0.33079 65 2.15631 1.68349 3.32885 0.41145 73 U + - , 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 66 0.66608 3.81701 0.82834 3.59295 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 67 2.69414 0.92364 2.55982 0.78087 75 u = - < 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 68 0.87704 2.70031 0.86539 2.34431 76 g = - < 1.38629 1.38629 1.38629 1.38629 0.07375 4.93749 2.75013 1.46634 0.26236 1.26710 0.33079 69 1.62353 3.08847 0.35117 2.93062 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.87907 3.67724 1.46634 0.26236 2.43905 0.09129 70 2.03672 2.95981 0.27093 2.89958 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.03800 4.86122 3.52164 1.46634 0.26236 2.53051 0.08297 71 2.48808 2.34843 3.44987 0.23615 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.06403 2.91656 4.83994 0.27030 1.44032 0.20064 1.70489 72 2.39942 2.28192 1.91641 0.41550 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02114 4.93425 4.28878 1.46634 0.26236 0.76126 0.62938 73 0.57429 1.77919 2.43582 1.71151 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01450 4.93398 4.93398 1.46634 0.26236 0.68351 0.70288 74 0.29972 2.80269 2.04961 2.66580 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04914 3.66740 3.79816 0.48850 0.95074 1.09861 0.40547 75 0.15322 2.82706 3.42274 2.99070 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01462 4.92604 4.92604 1.46634 0.26236 1.44585 0.26859 76 1.04476 1.22202 2.04437 1.49553 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09780 3.10809 3.02651 0.85060 0.55715 1.47113 0.26093 77 2.32990 0.51071 3.19643 1.34049 90 C + - _ 1.38629 1.38629 1.38629 1.38629 0.07924 4.88645 2.67897 1.46634 0.26236 0.43270 1.04628 78 3.12552 0.30181 2.74629 1.88100 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.01548 4.86902 4.86902 1.46634 0.26236 1.70841 0.19986 79 3.06160 0.36289 2.89582 1.59816 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87907 4.87907 1.46634 0.26236 0.25170 1.50274 80 2.74301 0.92512 2.49102 0.78458 93 u = - > 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 81 1.34685 2.73757 0.60780 2.03509 94 G = - > 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 82 3.80873 0.96826 3.59806 0.56088 95 U = - > 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 0.82849 0.57395 83 0.84956 2.70428 0.85276 2.53529 96 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 84 1.86156 1.38411 1.52027 0.97985 97 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 85 1.03729 2.18193 1.01008 1.78037 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 86 2.55154 0.92918 2.34478 0.84097 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 87 3.06185 0.37010 2.82401 1.59372 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 88 4.00368 2.79508 4.00687 0.10264 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 89 2.82889 0.87329 2.66825 0.78972 102 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 90 0.72400 2.13177 1.87332 1.41489 103 a + - : 1.38629 1.38629 1.38629 1.38629 0.00722 4.93426 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Cys STATES 289 NODES 76 CLEN 90 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto COM [2] cmcalibrate --seed 208 Cys-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 4203025139 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.5523 0.71872 ECMLC 0.63230 -7.45037 1.82190 1600000 422055 0.002843 ECMGC 0.33509 -38.57774 -23.65245 1600000 59441 0.006729 ECMLI 0.62678 -6.99791 2.27396 1600000 400898 0.002993 ECMGI 0.35524 -34.86801 -20.94503 1600000 56241 0.007112 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 137 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 9 31 102 139 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 11 32 103 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - U - + MR 3 2 3 5 5 16 39 101 138 -15.061 -0.000 -14.876 -15.088 -15.980 -12.730 -5.008 -13.900 1.989 D 4 2 3 5 5 7 28 100 136 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 9 31 101 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 A U = = MP 6 5 3 10 6 17 38 100 137 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.426 -14.373 -15.527 -9.831 -12.275 -11.792 1.398 -12.462 1.384 -9.756 -13.537 -11.662 -10.830 ML 7 5 3 10 6 8 30 98 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 8 30 98 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 5 25 95 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 9 30 100 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 9 31 99 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 G C = = MP 12 11 6 16 6 17 37 98 135 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.597 -9.715 -11.597 0.313 -12.624 -4.466 -1.536 -12.229 -11.226 3.767 -4.912 -0.712 -7.881 -10.963 -3.340 -10.565 ML 13 11 6 16 6 8 30 96 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 8 30 96 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 5 25 93 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 9 30 98 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 9 30 97 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 C G = = MP 18 17 6 22 6 16 35 96 133 -15.995 -15.934 -0.002 -14.710 -9.921 -15.385 -12.996 -13.250 -12.336 -9.458 -10.697 -12.494 3.589 -4.327 -4.604 -3.662 -5.043 -11.588 0.589 -12.843 1.158 -5.388 ML 19 17 6 22 6 8 29 94 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 8 29 94 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 5 25 91 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 9 30 96 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 9 30 95 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 C G = = MP 24 23 6 28 6 14 33 94 131 -15.993 -15.932 -0.000 -14.709 -14.989 -15.384 -13.044 -13.325 -4.313 -3.325 -4.588 -12.506 3.491 -11.628 -12.466 -9.533 -12.586 -11.728 0.351 -12.878 1.717 -11.267 ML 25 23 6 28 6 8 28 92 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 8 29 93 129 -8.231 -6.960 -0.485 -6.939 -2.073 -5.152 -0.824 -1.907 1.465 -1.293 D 27 23 6 28 6 5 24 89 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 8 30 94 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 8 30 93 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 C G = = MP 30 29 6 34 6 12 31 92 129 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.241 -11.021 -2.174 -4.098 -6.107 -11.752 3.441 -10.561 -11.018 -6.669 -5.033 -1.543 0.646 -3.671 1.214 -1.007 ML 31 29 6 34 6 7 28 91 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 7 27 90 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 5 24 88 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 8 29 92 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 8 29 91 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 u g = = MP 36 35 6 40 6 10 29 90 127 -6.387 -15.934 -0.018 -14.710 -14.990 -15.385 -10.302 -10.005 -10.301 -0.985 -4.016 -6.329 2.184 -9.821 -10.160 -0.318 -3.860 -7.574 1.044 -2.503 2.871 -1.176 ML 37 35 6 40 6 7 27 89 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 7 26 89 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 5 24 86 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 9 28 89 126 -6.473 -6.736 -0.040 -8.392 -9.168 -8.828 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 8 27 89 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = MP 42 41 6 46 4 8 27 88 125 -15.218 -15.425 -0.000 -13.839 -13.606 -10.564 -14.991 0.090 -15.399 -11.843 -9.852 -14.782 -11.908 3.885 -12.141 -2.664 -10.169 -12.265 -12.232 -13.757 ML 43 41 6 46 4 6 25 88 124 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 6 25 87 123 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 5 23 86 122 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 7 26 89 125 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 7 26 88 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 6 25 86 123 -16.127 -0.000 -14.781 0.582 -3.824 -1.593 1.071 D 49 47 6 50 3 4 23 85 121 -6.174 -1.687 -0.566 IL 50 50 3 50 3 6 25 87 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 5 24 85 122 -5.756 -0.027 0.429 -5.173 1.345 -3.548 D 52 50 3 53 2 4 23 84 121 -8.445 -0.004 IL 53 53 3 53 2 5 24 85 122 -6.312 -0.018 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 4 23 84 121 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 3 40 59 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 3 40 59 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 22 41 -0.141 -5.276 -5.558 -4.435 [ MATP 15 ] 12 28 G U = = MP 58 57 1 62 6 2 3 22 41 -15.854 -15.793 -0.000 -14.570 -14.850 -15.245 -11.979 -10.544 -12.199 -1.989 -14.295 -14.384 -9.691 -12.237 -11.660 2.846 -12.291 3.097 -9.645 -13.233 -11.561 -10.799 ML 59 57 1 62 6 1 1 19 38 -11.623 -11.969 -6.683 -6.378 -0.308 -2.557 -6.461 -5.867 -7.358 1.987 MR 60 57 1 62 6 1 1 19 37 -11.887 -10.616 -6.525 -10.595 -0.166 -3.378 -4.246 -1.359 -4.982 1.818 D 61 57 1 62 6 0 0 16 34 -15.594 -14.292 -10.089 -10.771 -10.789 -0.003 IL 62 62 5 62 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 U A = = MP 64 63 6 68 6 2 2 20 39 -15.854 -15.793 -0.004 -14.570 -14.850 -8.733 -12.504 -12.166 -12.387 -11.785 -10.577 -12.242 -11.331 -12.077 -10.473 -11.784 -12.583 -12.086 3.996 -10.569 -5.807 -5.590 ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 18 36 -12.798 -11.527 -7.436 -11.505 -3.722 -0.124 0.248 -5.955 1.473 -5.594 D 67 63 6 68 6 0 0 15 33 -15.782 -14.480 -10.277 -10.959 -10.977 -0.003 IL 68 68 5 68 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 G C = = MP 70 69 6 74 6 2 3 18 37 -15.851 -15.790 -0.002 -14.566 -9.495 -15.241 -13.586 -5.176 -15.243 -0.199 -15.319 -11.644 -9.709 -14.952 -11.769 3.914 -11.985 -5.692 -10.045 -12.086 -12.118 -14.077 ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 19 38 -9.217 -7.946 -3.855 -7.924 -0.141 -6.138 -2.138 -2.024 -2.898 1.762 D 73 69 6 74 6 0 0 14 33 -16.588 -15.286 -11.083 -11.765 -11.783 -0.002 IL 74 74 5 74 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 a u = = MP 76 75 6 80 4 2 2 16 35 -15.071 -15.278 -0.123 -3.612 -0.174 -2.399 -2.279 2.420 -7.210 -8.069 -2.483 -5.128 -1.961 -1.158 -5.114 -2.895 2.173 -1.325 0.560 0.925 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 18 37 -7.653 -6.682 -4.549 -0.085 0.104 -1.319 -1.662 1.143 D 79 75 6 80 4 0 0 14 33 -12.010 -11.692 -9.707 -0.003 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 14 33 -15.857 -0.284 -2.485 1.355 -2.784 -3.200 0.248 D 83 81 6 84 3 0 0 11 30 -14.997 -10.510 -0.001 IL 84 84 3 84 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - u - + - ML 85 84 3 87 3 1 1 13 32 -15.574 -1.775 -0.499 -0.091 -1.599 -0.017 0.801 D 86 84 3 87 3 0 0 11 29 -15.898 -11.411 -0.001 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - u - + - ML 88 87 3 90 3 1 1 13 32 -13.799 -2.982 -0.195 0.481 -2.609 -0.629 0.843 D 89 87 3 90 3 0 0 11 29 -17.226 -12.739 -0.000 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 14 33 -10.820 -3.924 -0.099 0.351 0.349 -3.023 0.409 D 92 90 3 93 3 0 0 11 29 -17.510 -3.213 -0.165 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 2 13 31 -12.900 -0.001 -11.554 1.175 -0.364 -0.068 -6.449 D 95 93 3 96 3 0 0 8 27 -17.384 -8.045 -0.005 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - u - + - ML 97 96 3 99 3 1 1 11 30 -12.943 -1.595 -0.580 0.193 -1.305 -0.172 0.646 D 98 96 3 99 3 0 0 7 26 -17.378 -5.373 -0.035 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 6 10 -0.507 -1.757 -10.670 -0.615 -5.242 -6.139 1.725 D 101 99 3 102 3 0 0 2 7 -17.460 -0.000 -11.852 IL 102 102 3 102 3 1 1 5 9 -6.253 -0.022 -8.953 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.026 -2.335 -1.311 0.447 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 26 45 -5.010 -0.046 -14.876 -15.088 -15.980 0.540 -4.811 1.220 -2.470 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -6.917 -0.019 -8.595 -10.428 -9.701 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.796 -6.088 -2.877 -2.218 -5.248 -10.602 0.691 -6.262 -1.526 -5.506 -10.219 -1.684 3.446 -1.942 0.359 -0.355 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 47 u a = = MP 118 117 6 122 6 2 2 23 42 -15.995 -6.415 -0.017 -14.710 -14.990 -15.385 -10.292 -9.994 -10.293 0.577 -5.339 -11.137 2.598 -7.004 -10.151 -1.425 -10.664 -2.856 2.750 -5.469 -0.182 -1.861 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 22 41 -5.618 -0.046 -9.130 -7.297 -8.403 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 g c = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.965 -3.980 -9.783 2.902 -4.952 -5.010 -2.728 -10.473 -10.221 2.968 -10.467 -3.121 -2.002 -9.637 -7.988 -4.366 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 a u = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.115 -3.925 -12.334 2.996 -14.433 -14.561 -9.832 -12.373 -11.801 2.950 -12.433 -2.160 -9.784 -13.381 -11.699 -10.934 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.035 -0.055 -3.881 3.627 -14.367 -15.507 -9.823 -3.461 -11.791 1.005 -12.460 -1.163 -9.749 -4.972 -11.654 -4.889 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -3.614 -1.544 -2.560 1.768 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -5.245 -11.437 -13.226 1.990 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.685 -4.359 1.982 -11.396 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -10.457 1.982 -4.348 -9.927 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.984 -6.229 -5.892 -6.149 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.771 -5.980 -0.852 -5.954 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 55 91 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 4 57 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - ML 166 165 2 168 3 1 3 55 91 -16.127 -0.000 -14.781 1.708 -2.361 -2.379 -1.531 D 167 165 2 168 3 0 1 53 89 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 56 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - G - + - ML 169 168 3 171 2 1 2 54 90 -16.782 -0.000 -1.167 -2.250 1.704 -3.552 D 170 168 3 171 2 0 1 53 89 -8.445 -0.004 IL 171 171 3 171 2 1 2 54 91 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 53 89 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 45 82 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 47 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - A - + - ML 231 230 2 233 3 1 2 45 82 -5.703 -0.028 -14.781 1.531 -3.960 -0.572 -1.426 D 232 230 2 233 3 0 0 43 80 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 45 82 -5.225 -0.045 -7.925 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - A - + - ML 234 233 3 236 5 1 1 44 81 -15.061 -0.000 -14.876 -15.088 -15.980 1.024 -0.403 -2.543 0.054 D 235 233 3 236 5 0 0 43 79 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 44 81 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 97 G C = = MP 237 236 3 241 6 2 2 43 80 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.628 -4.049 -15.055 -0.232 -15.410 -11.833 -9.852 -14.834 -2.879 3.885 -12.139 -2.483 -10.173 -12.258 -12.237 -13.831 ML 238 236 3 241 6 1 1 42 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 42 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 39 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 43 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 96 C G = = MP 243 242 6 247 6 2 2 41 78 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.293 -4.656 -10.294 -1.265 -4.457 -11.138 3.314 -9.812 -10.152 0.401 -10.665 -3.698 1.190 -6.288 0.822 -3.523 ML 244 242 6 247 6 1 1 40 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 41 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 37 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 41 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 41 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 95 A U = = MP 249 248 6 253 6 2 2 39 76 -6.403 -15.934 -0.041 -9.153 -14.990 -6.092 -9.974 -1.834 -4.972 3.503 -10.922 -6.283 0.075 -3.819 -4.557 1.258 -10.477 -0.806 -2.347 -9.650 -7.997 -8.758 ML 250 248 6 253 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 35 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 38 75 -6.458 -6.721 -0.041 -8.376 -9.153 -8.813 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 39 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 76 94 G C = = MP 255 254 6 259 6 2 2 37 74 -15.971 -15.910 -0.268 -3.108 -6.937 -4.468 -9.947 -4.393 -9.767 0.345 -10.878 -10.363 1.354 -10.450 -10.201 3.460 -10.449 -1.449 -0.901 -9.622 -2.224 -8.730 ML 256 254 6 259 6 1 1 39 75 -8.140 -8.486 -3.200 -0.210 -8.336 -5.865 1.710 -2.332 -1.968 -1.871 MR 257 254 6 259 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 28 65 -13.972 -12.670 -8.467 -9.149 -9.167 -0.009 IL 259 259 5 259 6 1 1 37 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 37 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 77 93 g c = = MP 261 260 6 265 4 2 2 34 70 -5.667 -15.132 -0.215 -3.071 -9.430 -0.177 -3.527 2.199 -10.205 0.327 0.567 -0.825 -9.688 2.387 -9.988 -0.838 -1.549 -1.678 -1.056 -2.267 ML 262 260 6 265 4 1 1 38 74 -2.294 -11.036 -0.332 -9.765 -7.981 1.448 -9.039 0.340 MR 263 260 6 265 4 1 1 40 76 -8.575 -0.264 -5.471 -2.815 -4.078 -5.587 1.958 -4.812 D 264 260 6 265 4 0 0 26 62 -11.371 -11.052 -1.395 -0.692 IL 265 265 5 265 4 1 1 40 76 -7.463 -0.021 -6.895 -10.632 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 39 75 -0.732 -1.411 -5.499 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 1 19 35 -5.896 -0.031 -7.885 -2.126 0.474 -1.839 1.072 D 268 266 6 269 3 0 0 18 34 -14.684 -0.215 -2.855 IL 269 269 3 269 3 1 1 19 35 -4.852 -0.059 -7.552 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - U - + - ML 270 269 3 272 3 1 1 18 34 -16.094 -0.026 -5.819 -2.297 -2.058 -1.462 1.675 D 271 269 3 272 3 0 0 16 33 -12.088 -1.657 -0.551 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - A - + - ML 273 272 3 275 3 1 1 17 33 -16.079 -0.005 -8.145 1.063 -0.237 -1.082 -0.761 D 274 272 3 275 3 0 0 15 32 -12.621 -0.938 -1.065 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - ML 276 275 3 278 3 1 1 16 32 -6.215 -0.021 -9.695 1.502 -3.889 -0.062 -2.824 D 277 275 3 278 3 0 0 14 30 -11.847 -2.865 -0.214 IL 278 278 3 278 3 1 1 16 32 -4.731 -0.064 -7.431 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - a - + - ML 279 278 3 281 3 1 1 15 31 -16.102 -0.023 -5.987 0.900 -0.035 -2.059 -0.123 D 280 278 3 281 3 0 0 14 30 -11.739 -7.252 -0.010 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - u - + - ML 282 281 3 284 3 1 1 14 30 -4.580 -0.958 -1.173 0.173 -0.395 -0.499 0.490 D 283 281 3 284 3 0 0 14 30 -3.307 -5.649 -0.186 IL 284 284 3 284 3 1 1 16 32 -1.653 -0.555 -9.589 0.000 0.000 0.000 0.000 [ MATL 74 ] 89 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.855 -0.157 0.068 0.587 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Cys LENG 90 MAXL 156 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto NSEQ 1085 EFFN 22.991848 CKSUM 4203025139 STATS LOCAL MSV -8.8759 0.71872 STATS LOCAL VITERBI -9.3530 0.71872 STATS LOCAL FORWARD -3.6875 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36746 1.53071 1.30313 1.35796 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 0.00000 * 1 0.42816 5.36973 1.08842 4.97753 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 2 2.11979 3.00021 0.23963 3.14090 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 3 3.60680 0.39176 3.14189 1.37122 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01000 5.39873 5.21592 1.46634 0.26236 1.09861 0.40547 4 3.90242 0.39480 4.21921 1.23346 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39782 5.39782 1.46634 0.26236 0.98052 0.47019 5 2.76226 0.57058 2.52607 1.23210 5 C = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 6 2.48412 1.23123 2.22652 0.66017 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02007 4.17707 5.39873 0.51179 0.91485 1.09861 0.40547 7 2.72444 5.38878 0.07806 5.31096 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 8 1.03651 2.80180 2.24001 0.73783 9 u + - , 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 9 1.14228 3.76246 0.48278 3.20355 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.09061 3.85410 2.72670 0.38295 1.14522 1.09861 0.40547 10 3.14240 4.76000 0.07442 3.91319 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03504 5.33588 3.51938 1.46634 0.26236 2.80150 0.06264 11 5.59964 5.22219 5.85191 0.01204 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01204 5.31077 4.95820 1.46634 0.26236 3.07360 0.04736 12 2.85821 5.22770 0.07109 5.13475 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.01117 5.30868 5.08934 1.46634 0.26236 3.09296 0.04643 13 1.12006 2.11233 1.99737 0.87445 15 u = - < 1.38629 1.38629 1.38629 1.38629 0.08647 5.30746 2.55255 1.46634 0.26236 3.10403 0.04591 14 0.53170 2.65084 2.80434 1.26849 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.18468 5.23174 1.81226 1.46634 0.26236 3.61111 0.02739 15 1.35113 2.11374 1.48299 0.93316 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.97569 5.05983 0.48334 1.46634 0.26236 4.19811 0.01514 16 1.13624 2.01827 1.73784 0.99374 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.91056 4.11726 0.54229 1.46634 0.26236 5.09212 0.00616 17 1.20628 1.47733 1.88666 1.13673 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.28883 3.28457 1.54456 1.46634 0.26236 2.19623 0.11791 18 0.85582 1.73623 1.54334 1.68622 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04768 3.76023 3.76023 1.46634 0.26236 4.69766 0.00916 19 1.22653 1.78175 1.60637 1.08549 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.48181 3.77528 1.02331 1.46634 0.26236 3.53539 0.02958 20 1.49128 1.90375 2.17323 0.66924 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.36341 1.29254 3.50248 0.20659 1.67852 0.01053 4.55874 21 0.77224 2.45287 2.10158 1.10953 24 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09730 5.39873 2.42824 1.46634 0.26236 1.09861 0.40547 22 1.19556 2.07802 1.59507 0.99589 25 u = - > 1.38629 1.38629 1.38629 1.38629 0.00992 5.31135 5.31135 1.46634 0.26236 3.06812 0.04762 23 5.04688 0.07940 5.05077 2.75674 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.00992 5.31135 5.31135 1.46634 0.26236 0.87517 0.53921 24 0.02701 5.59712 4.12423 4.99685 27 A = - > 1.38629 1.38629 1.38629 1.38629 0.03019 5.34989 3.68946 1.46634 0.26236 2.26120 0.11007 25 4.60676 0.79957 4.73345 0.63168 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.00972 5.33144 5.33144 1.46634 0.26236 0.12218 2.16276 26 1.08049 3.58492 0.56370 2.75310 29 G + - , 1.38629 1.38629 1.38629 1.38629 0.03772 3.42661 5.39873 0.25830 1.48000 1.09861 0.40547 27 2.19749 1.79519 2.11200 0.50779 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 28 2.20091 1.00447 2.50369 0.81809 32 u = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 29 0.95479 3.12366 0.65844 2.92893 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 30 0.76003 4.50966 0.67828 4.27911 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 31 0.34924 3.60922 1.43793 3.49711 35 A = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 32 3.28010 2.41145 3.08652 0.18991 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 33 4.11257 4.37871 5.05226 0.03594 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 34 4.88431 4.43025 0.02450 5.35514 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 35 4.91964 0.03279 4.23260 4.56181 39 C * - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 36 0.00936 6.04536 5.60010 5.72939 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 37 0.02559 4.90803 4.65176 4.78729 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 38 0.18777 4.25111 1.95390 4.18488 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 39 3.86343 1.39168 3.47663 0.35748 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 40 4.49932 0.71909 4.30306 0.71711 44 u = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 41 3.14974 0.69891 3.01577 0.88916 45 c = - > 1.38629 1.38629 1.38629 1.38629 0.01985 4.19078 5.39873 0.51805 0.90556 1.09861 0.40547 42 0.99015 2.70655 0.86592 1.95867 47 g = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 43 0.67510 2.38170 1.42770 1.84113 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 44 0.24952 2.76343 2.82751 2.31680 49 A + - , 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 45 2.08270 2.80992 0.25952 3.12871 50 G + - , 1.38629 1.38629 1.38629 1.38629 2.40299 5.39873 0.09979 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 47 1.80275 1.30601 1.07738 1.49713 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 48 1.80023 1.30678 1.07832 1.49662 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 49 1.79907 1.30714 1.07876 1.49639 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 50 1.79858 1.30729 1.07894 1.49629 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 51 1.79843 1.30734 1.07900 1.49626 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 52 1.79843 1.30734 1.07900 1.49626 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 57 1.72973 1.22043 1.16230 1.53806 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 58 1.72969 1.22045 1.16231 1.53804 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 59 1.72974 1.22043 1.16229 1.53806 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 60 1.72997 1.22033 1.16221 1.53813 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 61 1.73049 1.22011 1.16202 1.53828 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 62 1.73153 1.21966 1.16164 1.53859 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.00994 4.61574 64 0.37530 3.21362 1.81878 2.20293 69 A + - , 1.38629 1.38629 1.38629 1.38629 0.02671 3.82439 5.39873 0.37275 1.16744 1.09861 0.40547 65 0.77232 1.65897 2.54896 1.31096 71 a + - , 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 66 2.80159 5.09897 0.07631 5.01236 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 67 2.75696 0.61760 2.12805 1.27938 73 C = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 68 0.59114 2.42604 1.19934 2.87309 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.03357 4.18497 4.02906 0.51538 0.90949 1.09861 0.40547 69 2.07147 1.94252 0.42074 2.60239 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.05904 5.38537 2.94231 1.46634 0.26236 1.78071 0.18455 70 1.30012 1.41047 1.24730 1.62866 77 g = - < 1.38629 1.38629 1.38629 1.38629 0.15215 3.14409 2.32247 0.21014 1.66321 0.93778 0.49675 71 2.30420 1.10926 2.47731 0.72074 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02937 3.90897 4.72379 0.45334 1.00924 0.20961 1.66547 72 2.66482 2.60509 2.43806 0.26245 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02546 5.37834 3.88633 1.46634 0.26236 1.12779 0.39119 73 0.75202 1.58350 2.00636 1.66679 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01254 5.36892 4.85327 1.46634 0.26236 0.76800 0.62351 74 0.37557 3.37646 1.49382 2.91096 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02261 4.09200 5.17532 0.48179 0.96149 1.50363 0.25144 75 0.85200 1.46181 2.38697 1.38743 85 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02048 5.38282 4.15526 1.46634 0.26236 1.87009 0.16737 76 1.24292 1.65338 1.71796 1.07696 86 u + - _ 1.38629 1.38629 1.38629 1.38629 0.56630 3.09643 0.94889 0.45518 1.00604 2.08266 0.13307 77 1.59981 1.53752 1.46227 1.04571 89 u + - _ 1.38629 1.38629 1.38629 1.38629 0.29605 2.55010 1.72498 0.61123 0.78237 0.11126 2.25098 78 2.08357 1.04528 1.58342 1.14367 93 c = - > 1.38629 1.38629 1.38629 1.38629 0.01054 5.25139 5.25139 1.46634 0.26236 0.17263 1.84165 79 2.90310 0.47087 1.83262 1.82825 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.00922 5.38379 5.38379 1.46634 0.26236 0.38351 1.14402 80 3.05974 1.31279 2.35175 0.52962 95 U = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 81 1.72033 2.22333 0.45931 2.51303 96 G = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 82 4.40499 0.09677 4.94885 2.61829 97 C = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 83 5.37737 0.09242 5.27135 2.54439 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 84 1.74640 2.29280 0.49522 2.16129 99 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 85 1.90463 2.86487 0.36824 2.28099 100 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 86 2.28325 4.37927 0.14527 3.87664 101 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 87 2.04475 3.38959 0.22498 3.26138 102 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 88 3.51930 0.29685 2.80645 1.79091 103 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 89 5.17621 1.74578 5.14404 0.20579 104 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 90 4.86102 4.10153 5.39280 0.02926 105 U + - : 1.38629 1.38629 1.38629 1.38629 0.00455 5.39419 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Gln STATES 289 NODES 76 CLEN 90 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:51 2015 COM [1] cmbuild --hand --enone Gln-final-vert.cm ../Gln-2nd-align.sto COM [2] cmcalibrate --seed 208 Gln-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 2451779061 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.2526 0.71865 ECMLC 0.65347 -6.79758 2.40311 1600000 490125 0.002448 ECMGC 0.26691 -54.02545 -36.67020 1600000 41102 0.009732 ECMLI 0.58010 -7.48428 2.79958 1600000 467761 0.002565 ECMGI 0.27544 -50.11687 -33.39358 1600000 40041 0.009990 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 122 -15.013 -16.259 -0.000 -12.712 IL 1 1 2 1 4 21 43 103 124 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 44 103 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 104 - G - + MR 3 2 3 5 5 29 53 101 122 -15.062 -0.000 -14.877 -15.089 -15.981 0.923 -10.597 1.001 -3.294 D 4 2 3 5 5 19 39 100 121 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 21 43 102 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 103 U A = = MP 6 5 3 10 6 29 52 100 121 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.941 -12.850 -12.355 -1.039 -10.820 -12.609 -6.531 -11.671 -12.405 -9.196 -12.579 -10.775 3.936 -12.923 -2.345 -11.232 ML 7 5 3 10 6 20 41 99 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 41 99 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 17 37 96 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 21 42 100 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 21 42 100 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 102 A U = = MP 12 11 6 16 6 29 50 98 119 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.038 -2.789 -12.233 3.911 -14.375 -15.530 -9.832 -12.276 -11.793 -0.903 -12.463 -1.892 -9.757 -13.539 -11.663 -10.832 ML 13 11 6 16 6 20 40 97 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 20 40 97 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 17 37 94 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 21 42 98 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 21 42 98 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 101 G C = = MP 18 17 6 22 6 27 48 96 117 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.240 -10.670 -12.498 0.625 -14.524 -13.784 -9.832 -12.532 -11.815 3.812 -2.364 -2.873 -9.826 -13.179 -11.755 -3.683 ML 19 17 6 22 6 20 40 95 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 20 40 95 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 37 92 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 20 41 96 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 41 96 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 100 A U = = MP 24 23 6 28 6 26 46 94 115 -5.859 -15.935 -0.025 -14.712 -14.991 -15.387 -12.038 -5.924 -12.233 3.151 -14.374 -15.528 -9.832 -3.139 -3.562 0.983 -12.463 2.238 -9.757 -13.538 -11.663 -2.269 ML 25 23 6 28 6 20 40 93 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 40 93 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 17 37 90 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 23 44 93 114 -6.972 -7.235 -0.028 -8.890 -9.667 -9.327 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 41 94 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 99 A U = = MP 30 29 6 34 6 24 44 92 113 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.949 -3.004 -12.111 3.658 -14.110 -14.777 -3.551 -2.997 -11.738 0.429 -4.929 -0.312 -3.072 -13.187 -11.358 -0.442 ML 31 29 6 34 6 19 40 91 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 39 91 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 17 37 88 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 20 40 92 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 20 41 92 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 98 A U = = MP 36 35 6 40 6 22 42 90 111 -15.996 -15.935 -0.019 -6.228 -14.991 -15.387 -8.759 -4.653 -1.550 3.063 -6.322 -9.717 -0.929 -9.016 -8.927 0.208 -9.464 -0.236 1.225 -6.523 0.984 -1.380 ML 37 35 6 40 6 19 39 89 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 18 38 89 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 16 36 87 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 20 40 90 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 19 40 90 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 97 g c = = MP 42 41 6 46 4 20 40 88 109 -15.199 -15.407 -0.000 -13.821 -0.632 -8.596 -2.453 2.167 -10.909 -10.374 -5.975 -10.465 -0.834 2.482 -1.627 1.657 -0.433 -9.632 -2.791 -2.723 ML 43 41 6 46 4 19 39 87 108 -7.812 -7.994 -0.026 -6.724 -1.503 -3.535 1.703 -1.713 MR 44 41 6 46 4 17 37 88 109 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 16 36 87 108 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 19 39 90 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 19 39 89 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 18 38 86 107 -16.128 -0.000 -14.782 -3.024 -8.786 -2.636 1.893 D 49 47 6 50 3 16 36 85 106 -6.174 -1.687 -0.566 IL 50 50 3 50 3 18 38 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 17 37 85 106 -6.291 -0.019 0.591 -4.810 1.271 -4.511 D 52 50 3 53 2 16 36 84 105 -8.445 -0.004 IL 53 53 3 53 2 17 37 85 106 -5.807 -0.026 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 16 36 84 105 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 2 15 51 72 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 2 15 51 72 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 33 53 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 12 31 G C = = MP 58 57 1 62 6 2 5 33 53 -15.996 -15.935 -0.001 -10.371 -14.991 -15.387 -11.829 -10.349 -11.937 0.069 -13.590 -13.070 -1.764 -12.171 -11.598 3.771 -2.365 -0.601 -8.917 -12.327 -10.746 -2.797 ML 59 57 1 62 6 1 2 31 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 31 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 32 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 32 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 30 U A = = MP 64 63 6 68 6 2 5 31 51 -15.995 -15.934 -0.000 -14.711 -14.990 -15.385 -13.047 -13.329 -12.364 -2.806 -5.145 -12.509 -2.136 -11.630 -12.468 -9.537 -12.588 -11.733 3.917 -12.881 -1.018 -11.270 ML 65 63 6 68 6 1 2 29 50 -7.342 -7.688 -0.474 -2.096 -7.537 -5.067 -0.604 -0.778 -1.271 1.229 MR 66 63 6 68 6 1 2 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 27 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 30 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 29 G C = = MP 70 69 6 74 6 2 5 29 49 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.845 -5.248 -13.388 2.165 -14.950 -12.413 -9.845 -13.373 -11.867 3.517 -12.248 -4.691 -10.010 -12.601 -12.005 -12.020 ML 71 69 6 74 6 1 2 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 26 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 28 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 28 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 28 U G = = MP 76 75 6 80 4 2 5 27 47 -15.219 -15.426 -0.000 -13.840 -13.047 -13.322 -3.945 -2.574 -10.717 -12.511 -2.070 -11.632 -12.468 -9.533 -12.589 -11.716 0.312 -12.883 3.828 -3.658 ML 77 75 6 80 4 1 2 27 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 46 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 28 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 27 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 3 25 45 -16.128 -0.000 -14.782 1.932 -10.959 -2.758 -4.818 D 83 81 6 84 3 0 0 23 44 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 2 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - g - + - ML 85 84 3 87 3 1 2 24 44 -16.128 -0.020 -6.204 0.593 -4.206 0.995 -1.172 D 86 84 3 87 3 0 0 22 43 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 2 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - + - ML 88 87 3 90 3 1 1 23 43 -16.109 -1.543 -0.607 -0.265 -1.835 -1.402 1.327 D 89 87 3 90 3 0 0 18 39 -11.379 -6.892 -0.013 IL 90 90 3 90 3 1 2 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - + - ML 91 90 3 93 3 1 1 23 44 -1.070 -0.933 -13.220 0.212 -2.242 -1.099 1.113 D 92 90 3 93 3 0 0 11 30 -16.952 -0.001 -11.343 IL 93 93 3 93 3 1 1 23 43 -1.278 -0.768 -11.664 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - + - ML 94 93 3 96 3 1 1 11 29 -16.128 -0.000 -14.782 -3.662 -12.143 1.949 -4.034 D 95 93 3 96 3 0 0 15 34 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - + - ML 97 96 3 99 3 1 1 9 28 -16.128 -0.062 -4.567 -2.936 -12.424 1.952 -11.401 D 98 96 3 99 3 0 0 14 33 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - A - + - ML 100 99 3 102 3 1 1 7 26 -16.066 -0.000 -14.720 1.146 -5.030 -0.711 0.197 D 101 99 3 102 3 0 0 9 27 -12.992 -0.009 -7.383 IL 102 102 3 102 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.854 -5.635 -3.519 -1.849 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - g - + - ML 109 108 2 111 5 1 1 26 45 -6.387 -0.017 -14.877 -15.089 -15.981 -0.541 -0.937 0.788 0.089 D 110 108 2 111 5 0 0 25 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.637 -0.046 -7.315 -9.148 -8.421 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 54 A U = = MP 112 111 3 116 6 2 2 25 44 -6.320 -15.935 -0.018 -14.712 -14.991 -15.387 -4.244 -8.515 -5.035 3.082 -5.656 -10.138 -0.773 -10.075 -9.823 1.697 -3.947 0.770 0.083 -4.389 -2.463 -0.895 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 24 43 -6.537 -6.800 -0.039 -8.455 -9.232 -8.892 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 53 A U = = MP 118 117 6 122 6 2 2 23 42 -15.996 -6.391 -0.017 -14.712 -14.991 -15.387 -12.038 -3.585 -12.233 3.605 -14.374 -15.529 -9.832 -4.186 -11.793 1.192 -12.463 0.415 -9.757 -13.538 -11.663 -3.722 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 22 41 -5.640 -0.045 -9.152 -7.319 -8.425 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 51 G C = = MP 124 123 6 128 6 2 2 21 40 -6.334 -15.935 -0.018 -14.712 -14.991 -15.387 -12.182 -10.678 -12.421 0.863 -14.483 -14.095 -9.834 -12.457 -11.809 3.800 -12.412 -2.799 -9.808 -13.271 -11.731 -3.202 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 21 39 -6.524 -6.787 -0.039 -8.442 -9.218 -8.878 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 50 A U = = MP 130 129 6 134 6 2 2 19 37 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.038 -6.674 -12.233 3.717 -14.373 -15.528 -3.028 -4.629 -11.793 0.491 -12.463 0.347 -9.756 -13.538 -11.662 -10.832 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 49 G C = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -9.965 -8.603 -6.338 1.965 -10.914 -5.176 -4.476 -5.346 -10.222 3.152 -3.934 0.310 -3.634 -9.637 -1.538 0.448 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - U - + - ML 142 141 6 144 3 1 1 14 32 -16.128 -0.000 -14.782 -4.385 -2.134 -3.929 1.871 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -12.630 -4.537 -13.761 1.984 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - G - * - ML 154 153 3 156 3 1 1 8 27 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - A - + - ML 157 156 3 159 3 1 1 6 11 -5.544 -0.031 -14.782 1.749 -5.713 -0.693 -10.665 D 158 156 3 159 3 0 0 5 10 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 6 11 -5.374 -0.041 -8.074 0.000 0.000 0.000 0.000 [ MATL 41 ] 48 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.014 -3.334 -0.609 1.161 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 48 67 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 5 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - a - + - ML 166 165 2 168 3 1 4 48 67 -16.128 -0.000 -14.782 0.946 -0.944 -0.464 -0.272 D 167 165 2 168 3 0 2 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - a - + - ML 169 168 3 171 2 1 3 47 66 -16.784 -0.000 0.834 -4.356 0.826 -1.338 D 170 168 3 171 2 0 2 46 65 -8.445 -0.004 IL 171 171 3 171 2 1 3 48 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 57 74 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 58 73 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 59 72 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 60 71 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 61 70 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 62 69 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 63 68 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.432 -15.113 -13.129 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 64 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.545 -13.058 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 65 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.545 -13.058 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 66 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.545 -13.058 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 67 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 27 45 -16.128 -0.002 -9.331 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 75 - G - + - ML 231 230 2 233 3 1 4 27 45 -5.936 -0.024 -14.780 -1.521 -11.285 1.845 -4.108 D 232 230 2 233 3 0 0 26 44 -8.503 -0.213 -2.895 IL 233 233 3 233 3 1 1 27 45 -5.009 -0.053 -7.710 0.000 0.000 0.000 0.000 [ MATL 62 ] 77 - u - + - ML 234 233 3 236 5 1 4 26 44 -15.062 -0.000 -14.877 -15.089 -15.981 -0.519 -1.601 0.536 0.607 D 235 233 3 236 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 78 96 a u = = MP 237 236 3 241 6 2 4 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -4.145 -7.409 -2.033 2.482 -5.914 -3.518 -0.914 -3.741 -3.476 0.990 -4.919 1.872 -1.027 -4.441 -3.082 1.572 ML 238 236 3 241 6 1 1 25 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 79 95 u a = = MP 243 242 6 247 6 2 4 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -5.850 -5.418 -8.128 1.032 -7.951 -8.979 0.971 -4.250 -8.172 0.137 -2.196 -4.002 2.643 -1.901 0.149 1.528 ML 244 242 6 247 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 80 94 A U = = MP 249 248 6 253 6 2 3 21 39 -15.996 -15.935 -0.023 -14.712 -6.005 -15.387 -12.037 -10.697 -12.232 3.023 -14.371 -15.517 -9.828 -2.000 -11.793 2.686 -12.462 0.115 -9.754 -13.534 -11.659 -3.315 ML 250 248 6 253 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 93 G C = = MP 255 254 6 259 6 2 2 18 37 -15.973 -15.913 -0.032 -14.689 -14.969 -5.528 -13.935 -10.529 -16.410 -0.746 -15.552 -3.793 -9.833 -15.799 -11.900 3.925 -12.089 -2.806 -10.201 -12.154 -12.290 -15.586 ML 256 254 6 259 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 22 40 -11.464 -10.193 -6.102 -10.171 -0.029 -8.385 -5.603 1.973 -6.073 -4.711 D 258 254 6 259 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 92 G C = = MP 261 260 6 265 4 2 2 16 35 -15.164 -15.371 -0.000 -13.786 -13.901 -10.498 -16.362 -7.985 -15.517 -11.652 -9.800 -15.757 -11.869 3.999 -12.058 -8.435 -10.169 -12.123 -12.256 -15.531 ML 262 260 6 265 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 21 39 -0.056 -8.511 -6.378 -5.439 -5.603 1.973 -6.073 -4.711 D 264 260 6 265 4 0 0 17 36 -9.925 -9.606 -0.028 -5.876 IL 265 265 5 265 4 1 1 20 38 -6.152 -6.836 -0.036 -9.321 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 84 - U - + - ML 267 266 6 269 3 1 1 14 32 -16.128 -0.000 -14.782 -9.383 -5.589 -5.063 1.981 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 85 - U - + - ML 270 269 3 272 3 1 1 13 31 -16.128 -0.000 -14.782 -9.274 -5.479 -3.954 1.968 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 86 - C - + - ML 273 272 3 275 3 1 1 12 30 -16.128 -0.000 -14.782 -11.566 1.977 -12.027 -4.000 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 87 - G - + - ML 276 275 3 278 3 1 1 10 29 -16.128 -0.000 -14.782 0.695 -4.777 1.229 -10.667 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 88 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.128 -0.000 -14.782 1.971 -11.425 -4.648 -4.703 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 89 - g - + - ML 282 281 3 284 3 1 1 6 12 -6.361 -0.018 -14.782 -0.183 -1.734 0.541 0.447 D 283 281 3 284 3 0 0 5 11 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 7 12 -4.627 -0.069 -7.327 0.000 0.000 0.000 0.000 [ MATL 74 ] 91 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.802 -0.585 -2.045 1.559 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Gln LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:51 2015 COM [1] cmbuild --hand --enone Gln-final-vert.cm ../Gln-2nd-align.sto NSEQ 1086 EFFN 7.825676 CKSUM 2451779061 STATS LOCAL MSV -8.9307 0.71865 STATS LOCAL VITERBI -9.5998 0.71865 STATS LOCAL FORWARD -4.0124 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41599 1.72917 1.29294 1.18607 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 0.00000 * 1 3.56921 2.87545 4.07139 0.10716 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 2 0.12082 4.58752 2.41662 4.23986 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 3 1.84798 2.94474 0.32040 2.74931 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 4 0.87176 2.82103 0.80152 2.60920 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03381 3.75454 4.62169 0.69816 0.68816 1.09861 0.40547 5 0.64739 2.45124 1.30286 2.13156 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 6 1.12918 1.74949 1.55779 1.23018 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 7 1.35268 1.96667 0.90090 1.63308 8 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 8 2.72251 2.99004 2.97095 0.18302 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 9 1.04187 3.07245 0.62394 2.73231 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.03014 3.91954 4.62169 0.80471 0.59279 1.09861 0.40547 10 1.89323 2.67327 0.34911 2.58932 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 11 4.01103 2.65799 4.13230 0.11009 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 12 1.46627 3.50799 0.35110 3.34256 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 13 3.46173 2.22797 3.76525 0.17708 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 14 0.10699 3.82334 2.98636 3.53581 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 15 1.08254 2.56498 0.86822 1.80394 17 g + - _ 1.38629 1.38629 1.38629 1.38629 0.03076 4.62169 3.88938 1.46634 0.26236 1.09861 0.40547 16 1.43959 2.05364 2.05285 0.68055 18 U + - _ 1.38629 1.38629 1.38629 1.38629 0.76325 4.61101 0.64643 1.46634 0.26236 1.40606 0.28118 17 1.25260 1.86881 1.84861 0.91012 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.36261 1.25989 3.88953 0.59856 0.79762 0.03652 3.32823 18 3.21074 4.36537 0.08275 3.63518 24 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 19 3.16114 4.63581 0.06923 4.21219 25 G + - _ 1.38629 1.38629 1.38629 1.38629 0.05420 4.62169 3.14848 1.46634 0.26236 1.09861 0.40547 20 0.78724 2.36933 1.78196 1.26214 26 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02056 4.58805 4.58805 1.46634 0.26236 0.37733 1.15738 21 0.19971 3.13850 2.94370 2.46497 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 22 2.15512 3.91800 0.19045 3.27957 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 23 3.57272 0.38652 3.31685 1.36165 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.02045 4.62169 4.56570 1.46634 0.26236 1.09861 0.40547 24 0.14115 4.27191 2.35094 3.79822 30 A = - > 1.38629 1.38629 1.38629 1.38629 0.01988 4.62112 4.62112 1.46634 0.26236 1.06164 0.42448 25 2.90164 0.43520 2.43625 1.55852 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 26 1.46095 1.85340 1.09848 1.28048 32 g + - , 1.38629 1.38629 1.38629 1.38629 0.02946 3.95316 4.62169 0.82820 0.57418 1.09861 0.40547 27 1.10883 2.04691 1.01817 1.71666 34 g = - < 1.38629 1.38629 1.38629 1.38629 0.02998 3.92711 4.62169 0.80994 0.58858 1.09861 0.40547 28 0.50847 3.27965 1.15637 3.07228 36 A = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 29 1.81605 3.13234 0.30344 2.89246 37 G = - < 1.38629 1.38629 1.38629 1.38629 0.02988 3.93218 4.62169 0.81346 0.58577 1.09861 0.40547 30 0.35359 3.48269 1.43709 3.52366 39 A = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 31 1.48969 2.61279 0.55531 2.06094 40 G = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 32 2.89550 2.49391 3.26540 0.19363 41 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 33 3.72707 3.31351 4.25163 0.07763 42 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 34 4.08071 3.84022 4.63149 0.04932 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 35 4.08071 3.84022 4.63149 0.04932 44 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 36 4.09910 5.12925 0.03301 4.60882 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 37 0.25241 3.45030 1.86032 3.33210 46 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03717 3.62496 4.62169 0.62381 0.76765 1.09861 0.40547 38 1.31013 2.24045 1.76798 0.79158 48 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 39 2.71946 0.67726 2.32663 1.11334 49 C = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 40 3.72935 1.89097 3.37281 0.23474 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 41 3.21873 0.35298 2.93678 1.58783 51 C = - > 1.38629 1.38629 1.38629 1.38629 0.02949 3.95175 4.62169 0.82720 0.57496 1.09861 0.40547 42 3.38082 1.45641 3.14102 0.37154 53 U = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 43 2.00369 1.22799 1.82919 0.88737 54 u = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 44 0.91112 1.83563 1.69174 1.36958 55 a + - , 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 45 0.94306 2.57022 0.98157 1.83682 56 a + - , 1.38629 1.38629 1.38629 1.38629 1.62595 4.62169 0.23138 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 47 1.80295 1.30595 1.07731 1.49717 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 48 1.80056 1.30668 1.07820 1.49669 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 49 1.79948 1.30701 1.07860 1.49647 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 50 1.79906 1.30715 1.07876 1.49639 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 51 1.79894 1.30718 1.07880 1.49637 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 52 1.79898 1.30717 1.07879 1.49637 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 53 1.13112 1.65303 1.51838 1.32128 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 54 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 55 1.13112 1.65303 1.51838 1.32128 66 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 56 1.13112 1.65303 1.51838 1.32128 67 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 57 1.73025 1.22021 1.16211 1.53821 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 58 1.73017 1.22024 1.16214 1.53819 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 59 1.73018 1.22024 1.16213 1.53819 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 60 1.73034 1.22017 1.16208 1.53824 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 61 1.73077 1.21999 1.16192 1.53836 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 62 1.73171 1.21959 1.16158 1.53864 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.41480 0.01217 63 1.73350 1.21882 1.16092 1.53917 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02599 3.66288 64 2.30920 3.78052 0.17614 3.23526 75 G + - , 1.38629 1.38629 1.38629 1.38629 0.03305 3.78724 4.62049 0.71891 0.66803 1.02389 0.44503 65 1.44514 1.99755 1.24924 1.07325 77 u + - , 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 66 1.31257 1.76917 1.22614 1.32060 78 g = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 67 1.65118 1.55443 1.70389 0.87974 79 u = - < 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 68 1.01781 2.73255 0.68694 2.65289 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.03245 4.62169 3.81255 1.46634 0.26236 1.09861 0.40547 69 2.89956 4.04367 0.09343 4.09736 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.03764 4.60935 3.61263 1.46634 0.26236 0.63683 0.75282 70 3.57754 4.59469 0.04965 4.56681 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02021 4.60473 4.60473 1.46634 0.26236 0.55283 0.85641 71 3.29438 3.12790 3.62295 0.11385 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 72 3.21333 3.06502 3.40250 0.12802 85 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 73 4.25130 0.06103 4.69082 3.33025 86 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 74 0.94635 3.19967 0.65181 2.99638 87 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 75 0.06625 4.13197 3.65351 3.80999 88 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 76 1.34887 2.02671 1.24215 1.13963 89 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02965 3.94370 4.62169 0.82152 0.57939 1.09861 0.40547 77 2.25619 1.76706 2.49535 0.44325 91 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03717 4.62169 3.62496 1.46634 0.26236 1.09861 0.40547 78 4.55144 0.06445 4.43610 3.21821 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.02021 4.60473 4.60473 1.46634 0.26236 0.55283 0.85641 79 4.14880 0.11500 3.98345 2.60059 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 80 2.95837 0.82728 2.66227 0.81855 94 u = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 81 1.23469 1.84295 1.28952 1.28981 95 a = - > 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 82 1.77128 1.62470 1.55305 0.86438 96 u = - > 1.38629 1.38629 1.38629 1.38629 0.03063 4.62169 3.89568 1.46634 0.26236 1.09861 0.40547 83 1.72363 1.21286 1.68414 1.08284 97 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02008 4.61114 4.61114 1.46634 0.26236 0.67685 0.70971 84 1.58301 1.77359 1.35769 1.00058 98 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 85 2.54332 1.49419 2.29037 0.51796 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 86 2.90013 1.39069 2.69291 0.46458 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 87 3.05373 0.38006 2.66577 1.61219 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 88 4.43923 2.73307 4.37546 0.09366 102 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 89 0.12554 4.27630 2.63451 3.43184 103 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01987 4.62169 4.62169 1.46634 0.26236 1.09861 0.40547 90 0.82690 3.14336 0.81392 2.57251 104 g + - : 1.38629 1.38629 1.38629 1.38629 0.00998 4.61180 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Glu STATES 289 NODES 76 CLEN 90 W 131 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:52 2015 COM [1] cmbuild --hand --enone Glu-final-vert.cm ../Glu-2nd-align.sto COM [2] cmcalibrate --seed 208 Glu-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1088 EFFN 1088.000000 CKSUM 3356703110 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.6012 0.71862 ECMLC 0.62646 -6.57452 2.92551 1600000 461139 0.002602 ECMGC 0.28137 -45.63695 -29.04406 1600000 42625 0.009384 ECMLI 0.61426 -6.29645 3.30967 1600000 438348 0.002738 ECMGI 0.29432 -41.96728 -26.25918 1600000 40730 0.009821 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 131 212 -15.016 -16.261 -0.000 -12.715 IL 1 1 2 1 4 18 38 132 214 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 39 133 214 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 114 - U - + MR 3 2 3 5 5 25 47 132 213 -15.065 -0.000 -14.880 -15.092 -15.984 0.704 -2.956 -2.265 1.024 D 4 2 3 5 5 15 35 129 211 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 38 131 213 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 113 G U = = MP 6 5 3 10 6 25 46 131 212 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -12.041 -10.702 -12.236 -0.080 -14.357 -15.517 -0.692 -3.744 -11.797 1.080 -12.466 3.568 -9.752 -13.539 -11.650 -1.391 ML 7 5 3 10 6 17 37 128 209 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 36 128 209 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 33 124 205 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 38 130 211 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 38 129 211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 112 U A = = MP 12 11 6 16 6 25 45 129 210 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.048 -13.320 -12.368 -0.393 -10.721 -12.514 -1.743 -11.635 -12.470 -9.532 -12.591 -11.707 3.886 -12.886 -3.172 -4.656 ML 13 11 6 16 6 17 36 126 207 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 36 126 207 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 32 122 203 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 37 128 209 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 38 127 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 111 U A = = MP 18 17 6 22 6 23 43 127 208 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.050 -13.329 -12.368 -3.118 -10.719 -12.513 -0.668 -11.634 -4.259 -9.539 -12.592 -11.728 3.913 -12.885 -2.882 -11.273 ML 19 17 6 22 6 16 36 124 206 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 36 124 205 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 32 120 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 37 126 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 37 126 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 110 C G = = MP 24 23 6 28 6 21 41 125 206 -15.999 -6.459 -0.017 -14.714 -14.994 -15.389 -13.024 -13.291 -12.353 -1.717 -5.336 -12.505 3.266 -11.622 -12.454 -9.476 -12.579 -11.660 2.285 -12.865 0.150 -3.970 ML 25 23 6 28 6 16 36 122 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 35 122 203 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 32 118 200 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 124 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 39 124 205 -5.582 -0.047 -9.093 -7.261 -8.367 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 108 u a = = MP 30 29 6 34 6 19 39 123 204 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.024 -13.291 -12.353 -0.692 -6.031 -12.505 2.037 -11.622 -12.453 -9.475 -12.579 -11.660 2.780 -12.865 2.119 -4.359 ML 31 29 6 34 6 16 35 121 202 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 35 120 201 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 117 198 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 36 122 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 36 122 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 107 U A = = MP 36 35 6 40 6 17 37 121 202 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.041 -13.317 -12.362 -0.395 -7.198 -12.509 0.933 -11.629 -12.465 -9.516 -12.587 -11.707 3.252 -12.877 1.807 -1.768 ML 37 35 6 40 6 15 34 119 200 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 119 200 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 116 197 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 35 120 201 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 35 120 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 106 g c = = MP 42 41 6 46 4 15 35 119 200 -15.222 -15.429 -0.000 -13.843 -10.072 -8.710 -9.898 2.550 -11.041 -10.515 -4.424 -3.525 -6.200 2.856 -2.123 1.224 -2.623 -9.768 -8.117 -5.959 ML 43 41 6 46 4 14 33 118 199 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 117 198 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 31 116 197 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 34 118 200 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 118 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 117 198 -16.131 -0.000 -14.785 -2.691 -10.969 -12.376 1.943 D 49 47 6 50 3 12 31 115 196 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 33 117 198 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 116 197 -6.550 -0.015 1.925 -11.629 -2.300 -11.228 D 52 50 3 53 2 11 31 114 196 -8.445 -0.004 IL 53 53 3 53 2 12 32 116 197 -5.568 -0.031 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 114 196 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 90 172 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 90 172 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 33 55 -0.000 -14.126 -13.533 -14.173 [ MATP 15 ] 11 31 G C = = MP 58 57 1 62 6 2 3 33 55 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.979 -10.554 -16.557 -8.050 -15.586 -3.149 -9.858 -15.898 -11.926 3.967 -12.113 -2.040 -10.229 -12.175 -12.319 -15.801 ML 59 57 1 62 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 31 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 29 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 U A = = MP 64 63 6 68 6 2 3 31 53 -15.999 -15.938 -0.002 -14.714 -9.557 -15.389 -13.048 -13.317 -12.368 -9.555 -10.721 -12.515 -6.433 -11.635 -12.470 -9.530 -12.591 -11.700 3.903 -12.886 0.032 -11.272 ML 65 63 6 68 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 30 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 29 U A = = MP 70 69 6 74 6 2 3 29 51 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -4.229 -12.767 -12.353 -4.396 -10.844 -12.632 -6.554 -0.693 -3.970 -9.133 -12.578 -10.633 3.907 -12.932 -3.966 -2.896 ML 71 69 6 74 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 28 50 -8.462 -7.191 -0.402 -7.169 -2.303 -5.383 1.612 -1.958 -1.632 -1.463 D 73 69 6 74 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 28 G C = = MP 76 75 6 80 4 2 2 27 49 -15.222 -15.429 -0.012 -6.890 -11.966 -3.727 -4.366 0.318 -14.015 -13.930 -9.313 -4.204 -2.900 3.841 -12.307 -3.987 -9.361 -4.375 -11.225 -10.780 ML 77 75 6 80 4 1 1 27 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 48 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 28 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 25 47 -16.119 -0.004 -8.667 1.991 -5.379 -11.291 -11.342 D 83 81 6 84 3 0 0 22 45 -10.711 -6.224 -0.020 IL 84 84 3 84 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 24 46 -16.115 -0.259 -2.605 1.680 -10.156 -0.862 -2.027 D 86 84 3 87 3 0 0 22 45 -11.062 -6.575 -0.016 IL 87 87 3 87 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 23 46 -15.856 -0.455 -1.887 0.146 -2.764 -5.014 1.441 D 89 87 3 90 3 0 0 22 44 -15.025 -10.538 -0.001 IL 90 90 3 90 3 1 1 25 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 22 45 -3.266 -7.261 -0.169 0.647 -3.643 -9.188 1.234 D 92 90 3 93 3 0 0 22 44 -16.218 -0.899 -1.108 IL 93 93 3 93 3 1 1 24 46 -6.863 -0.082 -4.422 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - + - ML 94 93 3 96 3 1 2 23 45 -14.277 -0.000 -12.931 -1.443 -3.848 1.403 -0.124 D 95 93 3 96 3 0 0 18 40 -17.083 -5.227 -0.039 IL 96 96 3 96 3 1 1 24 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - g - + - ML 97 96 3 99 3 1 1 22 44 -14.374 -1.300 -0.752 -0.827 -2.648 0.736 0.688 D 98 96 3 99 3 0 0 17 39 -17.045 -8.561 -0.004 IL 99 99 3 99 3 1 1 24 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 22 44 -0.207 -2.908 -11.749 0.621 -2.636 -6.354 1.195 D 101 99 3 102 3 0 0 16 39 -5.735 -0.028 -11.755 IL 102 102 3 102 3 1 1 21 43 -1.187 -0.835 -11.336 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.910 -10.383 -3.379 -2.793 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 2 77 158 -16.131 -0.000 -14.785 IL 108 108 2 108 3 1 1 78 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - + - ML 109 108 2 111 5 1 3 77 158 -15.065 -0.000 -14.880 -15.092 -15.984 -0.290 -11.953 1.670 -11.264 D 110 108 2 111 5 0 0 74 156 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 77 158 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 54 a u = = MP 112 111 3 116 6 2 4 76 157 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -9.968 -8.607 -4.594 2.329 -10.916 -10.382 -2.838 -6.289 -5.570 2.262 -10.471 2.171 0.045 -9.641 -1.401 -4.494 ML 113 111 3 116 6 1 1 73 155 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 73 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 69 150 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 75 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 75 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 53 U A = = MP 118 117 6 122 6 2 4 74 155 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -5.847 -9.998 -5.839 -3.979 -9.163 -11.141 1.195 -6.332 -6.548 -2.078 -5.517 -4.360 3.581 -5.546 0.188 -2.762 ML 119 117 6 122 6 1 1 71 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 71 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 67 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 73 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 73 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 52 G C = = MP 124 123 6 128 6 2 4 72 153 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.644 -4.354 -15.094 1.252 -15.417 -11.830 -9.852 -14.869 -11.913 3.726 -12.141 -2.337 -10.175 -2.907 -12.240 -13.878 ML 125 123 6 128 6 1 1 70 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 69 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 66 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 71 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 71 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 51 g c = = MP 130 129 6 134 6 2 3 70 151 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -11.972 -4.863 -12.140 1.543 -14.163 -14.843 -9.550 -12.227 -3.729 2.884 -12.396 2.450 -9.536 -5.170 -11.415 -3.375 ML 131 129 6 134 6 1 1 68 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 67 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 64 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 69 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 69 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 50 U G = = MP 136 135 6 140 4 2 2 68 149 -15.222 -15.429 -0.079 -4.238 -13.047 -13.326 -12.366 -9.560 -4.953 -12.511 1.346 -11.632 -12.469 -9.531 -3.497 -5.432 2.121 -3.886 3.128 -2.736 ML 137 135 6 140 4 1 1 67 148 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 65 146 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 63 145 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 68 149 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 67 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - U - + - ML 142 141 6 144 3 1 1 66 147 -16.053 -0.000 -14.707 -8.996 -2.460 -5.436 1.923 D 143 141 6 144 3 0 0 61 142 -13.319 -8.832 -0.003 IL 144 144 3 144 3 1 1 66 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - U - + - ML 145 144 3 147 3 1 1 65 146 -16.053 -0.000 -14.707 -11.955 -1.429 -12.917 1.859 D 146 144 3 147 3 0 0 61 142 -13.319 -8.832 -0.003 IL 147 147 3 147 3 1 1 65 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - U - * - ML 148 147 3 150 3 1 1 64 145 -16.053 -0.000 -14.707 -13.336 -11.957 -14.912 2.000 D 149 147 3 150 3 0 0 61 142 -13.319 -8.832 -0.003 IL 150 150 3 150 3 1 1 64 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - U - * - ML 151 150 3 153 3 1 1 63 144 -16.053 -0.000 -14.707 -13.336 -11.957 -14.912 2.000 D 152 150 3 153 3 0 0 61 142 -13.319 -8.832 -0.003 IL 153 153 3 153 3 1 1 63 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - C - * - ML 154 153 3 156 3 1 1 62 143 -16.053 -0.000 -14.707 -12.641 2.000 -13.517 -11.029 D 155 153 3 156 3 0 0 61 142 -13.319 -0.007 -7.711 IL 156 156 3 156 3 1 1 62 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - + - ML 157 156 3 159 3 1 1 61 142 -4.240 -0.078 -14.785 1.651 -10.802 -0.259 -5.488 D 158 156 3 159 3 0 0 54 135 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 73 154 -0.326 -2.307 -11.613 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - a - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.788 -3.544 0.074 0.182 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 74 141 -16.131 -0.000 -14.785 IL 165 165 2 165 3 1 5 75 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - U - + - ML 166 165 2 168 3 1 4 74 141 -16.131 -0.000 -14.785 0.739 -4.046 -2.164 1.034 D 167 165 2 168 3 0 2 72 140 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 74 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - G - + - ML 169 168 3 171 2 1 3 73 140 -16.786 -0.000 0.294 -4.813 1.442 -5.522 D 170 168 3 171 2 0 2 72 139 -8.445 -0.004 IL 171 171 3 171 2 1 3 73 141 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 72 139 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.822 -14.126 -13.533 -0.007 [ MATP 48 ] 57 74 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 58 73 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 59 72 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 60 71 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 61 70 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 62 69 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 63 68 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.435 -15.116 -13.132 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 64 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.548 -13.061 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 65 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.548 -13.061 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 66 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.548 -13.061 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 67 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 70 138 -16.131 -0.004 -8.367 IL 230 230 2 230 3 1 1 72 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 75 - G - + - ML 231 230 2 233 3 1 4 70 138 -4.454 -0.067 -14.781 -1.654 -10.228 1.759 -1.749 D 232 230 2 233 3 0 0 69 137 -9.337 -0.116 -3.729 IL 233 233 3 233 3 1 1 70 138 -6.412 -0.020 -9.112 0.000 0.000 0.000 0.000 [ MATL 62 ] 77 - U - + - ML 234 233 3 236 5 1 4 69 137 -15.065 -0.000 -14.880 -15.092 -15.984 -4.273 -1.129 -4.071 1.779 D 235 233 3 236 5 0 0 67 135 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 69 137 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 78 105 C G = = MP 237 236 3 241 6 2 4 68 136 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.037 -13.311 -12.361 -9.541 -10.714 -12.509 3.623 -11.628 -12.463 -0.692 -12.585 -11.697 1.045 -12.875 -0.080 -4.384 ML 238 236 3 241 6 1 1 66 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 65 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 61 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 67 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 67 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 79 104 u a = = MP 243 242 6 247 6 2 4 66 134 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -10.294 -9.996 -10.295 1.434 -5.559 -11.139 2.076 -6.408 -10.153 -0.415 -10.667 -0.754 2.524 -10.477 0.774 -2.058 ML 244 242 6 247 6 1 1 64 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 63 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 60 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 65 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 65 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 80 103 U A = = MP 249 248 6 253 6 2 2 64 132 -6.252 -15.938 -0.045 -14.714 -7.946 -6.206 -3.135 -10.013 -6.384 -0.863 -5.503 -11.151 1.474 -9.828 -10.169 -0.703 -10.681 -7.581 3.110 -10.493 0.628 0.783 ML 250 248 6 253 6 1 1 62 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 61 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 58 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 63 131 -6.603 -6.866 -0.037 -8.521 -9.297 -8.958 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 63 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 82 102 G C = = MP 255 254 6 259 6 2 2 62 130 -15.973 -15.912 -0.023 -14.689 -14.969 -6.013 -13.477 -10.548 -14.675 0.425 -15.320 -11.874 -9.829 -14.517 -11.882 3.840 -12.131 -1.573 -10.129 -12.277 -12.183 -13.402 ML 256 254 6 259 6 1 1 61 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 58 126 -9.692 -8.421 -4.330 -8.399 -3.533 -0.223 -2.854 -2.628 -3.631 1.856 D 258 254 6 259 6 0 0 57 124 -13.866 -12.564 -8.361 -9.043 -9.061 -0.010 IL 259 259 5 259 6 1 1 61 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 61 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 83 101 G C = = MP 261 260 6 265 4 2 2 60 128 -15.173 -15.380 -0.002 -9.294 -12.486 -10.602 -12.849 -3.166 -14.527 -12.854 -9.688 -3.565 -11.800 3.884 -12.270 -5.128 -4.008 -12.797 -0.081 -11.467 ML 262 260 6 265 4 1 1 59 127 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 59 126 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 57 124 -10.534 -10.215 -4.246 -0.080 IL 265 265 5 265 4 1 1 60 128 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 60 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 84 - U - + - ML 267 266 6 269 3 1 1 58 126 -4.927 -0.048 -14.737 -1.147 -4.334 -1.774 1.681 D 268 266 6 269 3 0 0 57 124 -12.633 -0.649 -1.466 IL 269 269 3 269 3 1 1 59 126 -1.682 -0.543 -9.130 0.000 0.000 0.000 0.000 [ MATL 69 ] 87 - U - + - ML 270 269 3 272 3 1 1 57 125 -16.114 -0.010 -7.166 -3.534 -4.952 -0.484 1.663 D 271 269 3 272 3 0 0 55 123 -11.181 -1.115 -0.895 IL 272 272 3 272 3 1 1 58 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 88 - A - + - ML 273 272 3 275 3 1 1 56 124 -16.112 -0.000 -14.766 1.557 -2.272 -1.517 -0.994 D 274 272 3 275 3 0 0 55 123 -11.337 -0.028 -5.728 IL 275 275 3 275 3 1 1 56 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 89 - A - + - ML 276 275 3 278 3 1 1 55 123 -6.409 -0.026 -7.388 1.133 -2.165 0.487 -2.461 D 277 275 3 278 3 0 0 50 118 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 55 123 -4.586 -0.071 -7.286 0.000 0.000 0.000 0.000 [ MATL 72 ] 91 - A - + - ML 279 278 3 281 3 1 1 54 122 -16.122 -0.002 -9.319 1.815 -2.240 -3.552 -2.447 D 280 278 3 281 3 0 0 39 107 -10.242 -5.755 -0.028 IL 281 281 3 281 3 1 1 54 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 92 - g - + - ML 282 281 3 284 3 1 1 53 121 -3.389 -0.189 -5.201 0.128 -3.349 0.848 0.013 D 283 281 3 284 3 0 0 34 101 -10.553 -6.066 -0.023 IL 284 284 3 284 3 1 1 61 128 -0.393 -2.132 -6.602 0.000 0.000 0.000 0.000 [ MATL 74 ] 100 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.391 -2.315 -1.080 1.558 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Glu LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:52 2015 COM [1] cmbuild --hand --enone Glu-final-vert.cm ../Glu-2nd-align.sto NSEQ 1088 EFFN 9.408936 CKSUM 3356703110 STATS LOCAL MSV -8.7123 0.71862 STATS LOCAL VITERBI -9.3910 0.71862 STATS LOCAL FORWARD -3.4345 0.71862 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34971 1.69367 1.40529 1.16621 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 0.00000 * 1 2.08810 2.63248 0.29453 2.82517 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 2 2.86463 2.31865 3.59410 0.20199 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 3 3.88702 2.35302 3.86945 0.14671 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 4 2.70962 0.68474 2.62974 1.02969 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 5 2.50019 1.21620 2.56906 0.60703 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 6 2.38215 1.52308 2.48436 0.50050 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 7 1.25860 2.75484 0.54952 2.58893 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 8 2.86218 3.32967 3.92561 0.11955 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 9 0.09381 4.16374 2.87688 4.03481 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02682 4.04448 4.71721 0.82523 0.57650 1.09861 0.40547 10 3.71927 4.35169 0.04748 4.68521 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 11 4.77821 3.15160 4.69198 0.06226 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01911 4.71721 4.60625 1.46634 0.26236 1.09861 0.40547 12 5.36926 4.73869 5.35259 0.01831 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71616 4.71616 1.46634 0.26236 1.02602 0.44384 13 1.86202 2.81958 0.33413 2.67297 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.02491 4.71721 4.15624 1.46634 0.26236 1.09861 0.40547 14 0.03795 4.38828 4.33293 4.44894 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02015 4.71046 4.51457 1.46634 0.26236 1.32239 0.30993 15 0.31953 3.17944 1.96182 2.39358 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.16254 4.70851 1.95903 1.46634 0.26236 1.37845 0.29031 16 1.38576 2.31334 2.70490 0.53775 17 U + - _ 1.38629 1.38629 1.38629 1.38629 0.26110 4.56698 1.51683 1.46634 0.26236 2.92334 0.05525 17 1.11278 2.24672 2.52253 0.72288 18 u + - _ 1.38629 1.38629 1.38629 1.38629 1.31372 2.47900 0.43486 0.28843 1.38406 0.65273 0.73527 18 1.54576 2.15776 0.83963 1.42963 20 g + - _ 1.38629 1.38629 1.38629 1.38629 0.04931 3.85032 3.61772 1.46634 0.26236 3.21358 0.04104 19 1.42023 1.95476 1.26416 1.09582 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.41890 3.88104 1.13445 1.46634 0.26236 3.84531 0.02161 20 1.16930 1.78392 2.00443 0.95010 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.45921 1.08156 3.53527 0.61296 0.78033 0.02514 3.69575 21 0.12369 3.65749 3.15675 3.03690 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 22 2.89124 0.38394 2.63281 1.65315 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 23 0.02263 5.50269 4.57933 4.82388 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 24 0.10333 4.81310 2.54269 4.47506 30 A = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 25 4.71231 0.06399 4.54869 3.16022 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 26 1.64979 3.87047 0.27670 3.54823 32 G + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 27 1.35543 2.61793 0.59875 2.12267 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 28 2.49032 1.42584 2.19286 0.57055 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 29 1.84910 3.26489 0.27966 3.02872 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 30 1.60523 2.89528 0.39225 2.68324 36 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 31 2.60197 1.42767 2.35968 0.52500 37 U = - < 1.38629 1.38629 1.38629 1.38629 0.06235 4.71721 2.96608 1.46634 0.26236 1.09861 0.40547 32 3.26425 2.67759 3.63740 0.14303 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 33 3.42475 2.30697 3.94120 0.16434 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 34 4.24210 3.98738 4.79615 0.04206 40 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 35 4.24210 3.98738 4.79615 0.04206 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 36 4.63386 0.03529 5.03091 3.99430 42 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 0.29800 1.35598 37 0.30234 3.69412 1.59929 3.38129 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06235 2.96608 4.71721 1.59440 0.22694 1.09861 0.40547 38 0.96524 2.33905 1.44902 1.24518 49 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 39 1.32818 2.54802 0.58170 2.32425 50 G = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 40 2.96523 0.73439 2.70243 0.91227 51 c = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 41 3.37918 0.31217 3.07919 1.67092 52 C = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 42 0.70668 2.37562 1.18746 2.21850 53 a = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 43 2.40702 0.93515 2.31513 0.87075 54 u = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 44 1.00041 2.39832 2.23262 0.83436 55 u + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 45 1.22364 3.27952 0.47784 3.03507 56 G + - , 1.38629 1.38629 1.38629 1.38629 1.72148 4.71721 0.20794 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 47 1.80290 1.30596 1.07733 1.49716 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 48 1.80048 1.30671 1.07823 1.49667 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 49 1.79938 1.30704 1.07864 1.49645 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 50 1.79894 1.30718 1.07881 1.49637 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 51 1.79882 1.30722 1.07885 1.49634 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 52 1.79885 1.30721 1.07884 1.49635 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 53 1.13112 1.65303 1.51838 1.32128 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 54 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 55 1.13112 1.65303 1.51838 1.32128 66 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 56 1.13112 1.65303 1.51838 1.32128 67 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 57 1.73012 1.22026 1.16215 1.53817 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 58 1.73005 1.22029 1.16218 1.53815 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 59 1.73007 1.22029 1.16217 1.53816 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 60 1.73025 1.22021 1.16211 1.53821 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 61 1.73070 1.22002 1.16194 1.53834 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 62 1.73166 1.21961 1.16159 1.53863 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 63 1.73350 1.21882 1.16092 1.53917 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02475 3.71148 64 2.22134 3.46601 0.25395 2.47028 75 G + - , 1.38629 1.38629 1.38629 1.38629 0.05614 3.08713 4.71480 0.35505 1.20776 0.94600 0.49150 65 2.92611 2.13943 3.32051 0.23251 77 U + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 66 3.05159 0.46958 2.44448 1.42428 78 C = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 67 1.76771 1.24366 1.88494 0.94389 79 u = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 68 2.12097 1.40603 2.00730 0.69191 80 U = - < 1.38629 1.38629 1.38629 1.38629 0.04361 3.93542 3.76647 0.75151 0.63800 1.09861 0.40547 69 2.41208 4.18316 0.13044 4.05052 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.03108 4.70292 3.83819 1.46634 0.26236 1.52336 0.24587 70 2.25807 2.83238 0.29835 2.35880 83 G = - < 1.38629 1.38629 1.38629 1.38629 0.01978 4.69037 4.56593 1.46634 0.26236 1.64684 0.21401 71 1.99343 2.69974 2.46132 0.34076 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04566 3.33948 4.69052 0.66728 0.71970 0.72131 0.66575 72 2.58436 2.83675 1.96287 0.32091 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02390 4.70773 4.22757 1.46634 0.26236 0.99962 0.45890 73 0.47043 2.35297 2.17950 1.78926 88 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01824 4.70661 4.70661 1.46634 0.26236 0.65113 0.73700 74 0.74039 2.35162 1.18982 2.09085 89 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03264 3.99562 4.28928 0.79140 0.60369 1.09861 0.40547 75 0.22893 2.59853 2.97606 2.53529 91 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01938 4.71243 4.58416 1.46634 0.26236 1.26246 0.33262 76 1.27308 2.39160 0.99745 1.34811 92 g + - _ 1.38629 1.38629 1.38629 1.38629 0.12386 2.45709 3.47981 1.43217 0.27285 1.30045 0.31802 77 1.91569 2.30373 2.09988 0.46140 100 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04466 4.68913 3.36727 1.46634 0.26236 0.45057 1.01408 78 2.99233 0.33956 2.32447 1.96677 101 C = - > 1.38629 1.38629 1.38629 1.38629 0.01854 4.69037 4.69037 1.46634 0.26236 0.77802 0.61492 79 4.19725 0.16296 4.00249 2.14503 102 C = - > 1.38629 1.38629 1.38629 1.38629 0.01824 4.70621 4.70621 1.46634 0.26236 0.64157 0.74753 80 0.96691 2.15975 1.14253 1.68535 103 a = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 81 1.20238 2.14613 1.00377 1.53205 104 g = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 82 1.74053 2.56791 0.37805 2.76973 105 G = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 83 2.83706 0.75202 2.51895 0.94304 106 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 84 0.80950 2.66296 1.00603 2.12437 107 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 85 1.02821 2.74806 0.73688 2.30562 108 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02743 4.01091 4.71721 0.80184 0.59512 1.09861 0.40547 86 1.24955 2.81014 0.56362 2.47662 110 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 87 0.16665 4.13887 2.18371 3.69135 111 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 88 0.23057 3.77649 2.13764 2.73207 112 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 89 3.35538 1.56139 2.56608 0.38798 113 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 90 1.02048 2.28280 2.24245 0.84076 114 u + - : 1.38629 1.38629 1.38629 1.38629 0.00906 4.70823 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Gly STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone Gly-final-vert.cm ../Gly-2nd-align.sto COM [2] cmcalibrate --seed 208 Gly-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 2291642441 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.9513 0.71858 ECMLC 0.57882 -7.62858 2.58801 1600000 444042 0.002702 ECMGC 0.28158 -45.83651 -29.27343 1600000 42414 0.009431 ECMLI 0.60000 -6.77038 2.97835 1600000 416378 0.002882 ECMGI 0.29089 -42.10203 -26.18494 1600000 41008 0.009754 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 118 -15.013 -16.259 -0.000 -12.712 IL 1 1 2 1 4 20 41 101 120 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 42 101 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - A - + MR 3 2 3 5 5 27 49 99 118 -15.062 -0.000 -14.877 -15.089 -15.981 2.000 -12.067 -11.313 -11.400 D 4 2 3 5 5 17 37 98 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 20 41 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 A U = = MP 6 5 3 10 6 27 48 98 117 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -3.663 -2.183 -12.233 3.575 -14.374 -15.528 -9.832 -12.276 -11.793 1.676 -12.463 -0.786 -9.757 -13.538 -11.663 -10.832 ML 7 5 3 10 6 19 39 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 39 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 16 35 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 40 98 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 40 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 U A = = MP 12 11 6 16 6 27 47 96 115 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.035 -13.310 -12.358 -9.539 -2.012 -12.506 2.367 -11.626 -12.460 0.051 -12.583 -11.697 3.238 -12.873 -3.089 -11.261 ML 13 11 6 16 6 18 38 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 38 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 34 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 40 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 40 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 c g = = MP 18 17 6 22 6 26 45 94 113 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.026 -13.296 -12.353 -9.520 -1.431 -12.503 2.891 -11.622 -12.454 0.180 -12.578 -11.671 2.793 -12.866 -2.759 -11.255 ML 19 17 6 22 6 18 38 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 38 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 19 39 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 40 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 U A = = MP 24 23 6 28 6 24 43 92 111 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -5.177 -10.345 -10.585 -2.880 -3.231 -11.367 2.251 -10.084 -10.458 -3.008 -10.945 -7.930 3.248 0.042 -1.848 -5.295 ML 25 23 6 28 6 18 38 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 18 37 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 34 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 39 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 39 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 U A = = MP 30 29 6 34 6 22 41 90 109 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.042 -13.320 -12.362 -3.297 -0.706 -12.508 1.026 -5.073 -12.465 -9.523 -12.586 -11.716 3.546 -12.877 0.507 -3.135 ML 31 29 6 34 6 18 37 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 18 37 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 15 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 38 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 38 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 U A = = MP 36 35 6 40 6 20 39 88 107 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.044 -13.323 -12.363 -3.445 -0.823 -12.508 1.555 -4.127 -12.466 -9.527 -12.587 -11.721 3.600 -12.879 -2.380 -5.259 ML 37 35 6 40 6 17 36 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 17 36 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 15 33 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 37 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 37 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 C G = = MP 42 41 6 46 4 18 37 86 105 -15.219 -15.426 -0.000 -13.840 -13.048 -13.330 -12.365 -9.567 -5.115 -12.510 3.170 -11.631 -12.469 -9.538 -3.656 -11.734 2.765 -12.882 -3.472 -11.271 ML 43 41 6 46 4 16 35 87 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 16 34 86 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 15 33 85 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 36 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 36 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 16 35 84 103 -3.773 -0.110 -14.782 -5.960 -5.906 -5.252 1.979 D 49 47 6 50 3 14 33 83 102 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 35 84 103 -7.078 -0.012 -9.778 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 15 34 83 102 -16.784 -0.000 2.000 -12.067 -11.313 -11.400 D 52 50 3 53 2 14 33 82 101 -8.445 -0.004 IL 53 53 3 53 2 15 34 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 14 33 82 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 43 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 43 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 25 43 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 11 30 G C = = MP 58 57 1 62 6 2 3 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.149 -10.590 -13.923 -1.447 -15.141 -12.123 -9.849 -13.864 -11.887 3.616 -12.198 1.751 -10.082 -12.437 -12.106 -12.584 ML 59 57 1 62 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 29 U A = = MP 64 63 6 68 6 2 3 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.046 -13.319 -12.365 -9.556 -10.718 -12.511 -2.767 -11.632 -12.468 0.051 -12.589 -11.708 3.886 -12.883 -4.888 -11.270 ML 65 63 6 68 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 28 A U = = MP 70 69 6 74 6 2 3 21 39 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.046 -3.553 -12.235 3.894 -14.203 -15.422 -9.690 -12.267 -11.799 -7.372 -12.465 -7.999 0.051 -13.530 -11.536 -10.836 ML 71 69 6 74 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 27 U G = = MP 76 75 6 80 4 2 3 19 37 -15.219 -15.426 -0.000 -13.840 -2.958 -13.325 -3.949 -4.052 -1.885 -12.509 0.682 -11.630 -12.467 -9.531 -12.588 -11.725 1.244 -12.880 3.329 0.537 ML 77 75 6 80 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 17 34 -16.128 -0.000 -14.782 1.108 -1.307 -4.691 0.487 D 83 81 6 84 3 0 0 19 38 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 16 33 -16.128 -0.227 -2.778 1.667 -1.978 -2.059 -1.593 D 86 84 3 87 3 0 0 18 37 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - + - ML 88 87 3 90 3 1 1 15 32 -15.901 -0.824 -1.201 1.119 -0.425 -4.258 0.044 D 89 87 3 90 3 0 0 13 31 -14.772 -10.285 -0.001 IL 90 90 3 90 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - a - + - ML 91 90 3 93 3 1 1 14 31 -2.480 -3.887 -0.409 0.837 -0.315 -8.254 0.493 D 92 90 3 93 3 0 0 13 30 -16.598 -0.383 -2.102 IL 93 93 3 93 3 1 1 14 31 -7.314 -0.010 -10.015 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 13 30 -15.174 -0.010 -7.200 1.457 -0.851 -0.622 -4.320 D 95 93 3 96 3 0 0 11 28 -16.501 -2.544 -0.271 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - g - + - ML 97 96 3 99 3 1 1 12 28 -15.381 -0.230 -2.763 -0.755 -0.063 0.717 -0.311 D 98 96 3 99 3 0 0 10 27 -16.242 -11.755 -0.000 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 11 22 -1.097 -0.909 -13.805 -2.521 -0.457 -4.826 1.614 D 101 99 3 102 3 0 0 9 20 -3.955 -0.097 -10.917 IL 102 102 3 102 3 1 1 11 22 -2.471 -0.287 -11.920 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.957 -4.463 -5.713 -4.246 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - A - + - ML 109 108 2 111 5 1 1 26 45 -15.062 -0.000 -14.877 -15.089 -15.981 1.598 -2.571 -0.772 -2.187 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 32 48 a u = = MP 112 111 3 116 6 2 2 25 44 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -0.440 1.233 -4.944 2.926 -3.988 -2.796 -2.143 -2.424 -5.200 1.268 -8.102 -1.608 0.231 -1.517 -3.935 -1.718 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 47 g c = = MP 118 117 6 122 6 2 2 23 42 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -8.564 -3.704 -8.655 1.182 -4.688 -5.872 0.977 -1.174 -8.816 2.427 -9.301 1.163 1.272 -0.387 -2.794 -2.079 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 46 U A = = MP 124 123 6 128 6 2 2 21 40 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -5.118 -13.258 -12.341 0.151 -1.313 -2.964 -3.536 -11.612 -12.439 -3.712 -12.568 -11.600 3.693 -4.255 -4.834 0.192 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 45 G C = = MP 130 129 6 134 6 2 2 19 38 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.575 -10.567 -14.898 -1.215 -15.383 -11.860 -9.853 -14.706 -11.908 3.843 -12.146 0.277 -10.165 -12.276 -12.225 -13.650 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 44 A U = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -12.040 -4.255 -12.229 3.715 -14.240 -15.420 0.582 -6.638 -11.795 0.184 -12.461 -4.411 -3.054 -13.518 -11.558 -10.831 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.128 -0.000 -14.782 -10.102 1.814 -5.538 -1.112 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -12.452 -3.756 -13.523 1.973 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -12.103 -1.947 -13.081 1.903 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.909 -2.038 -11.397 -11.038 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 48 67 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 6 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - u - + - ML 166 165 2 168 3 1 5 48 67 -16.128 -0.000 -14.782 0.553 -0.010 -3.946 0.561 D 167 165 2 168 3 0 3 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - + - ML 169 168 3 171 2 1 4 47 66 -16.784 -0.000 1.409 -1.885 0.052 -4.750 D 170 168 3 171 2 0 3 46 65 -8.445 -0.004 IL 171 171 3 171 2 1 4 48 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.432 -15.113 -13.129 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.545 -13.058 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.545 -13.058 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.545 -13.058 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 31 48 -16.128 -0.000 -14.782 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - G - + - ML 231 230 2 233 3 1 4 31 48 -6.296 -0.019 -14.782 0.247 -10.673 1.479 -5.346 D 232 230 2 233 3 0 0 29 46 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 31 48 -4.685 -0.066 -7.385 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - U - + - ML 234 233 3 236 5 1 3 30 47 -15.062 -0.000 -14.877 -15.089 -15.981 -0.706 -0.609 -3.850 1.412 D 235 233 3 236 5 0 0 29 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 31 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 93 C G = = MP 237 236 3 241 6 2 4 29 46 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.044 -13.323 -12.363 -9.557 -10.714 -12.508 3.168 -11.629 -12.466 0.051 -12.587 -11.721 2.559 -12.879 -3.630 -11.268 ML 238 236 3 241 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 28 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 29 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 92 U A = = MP 243 242 6 247 6 2 4 27 44 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.038 -13.314 -12.360 0.051 -3.020 -12.507 2.430 -11.627 -12.462 -9.514 -12.584 -11.705 3.164 -12.875 -1.038 -11.264 ML 244 242 6 247 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 24 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 27 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 91 U A = = MP 249 248 6 253 6 2 2 25 42 -15.996 -6.303 -0.052 -14.712 -8.903 -5.624 -11.173 -10.946 -11.051 -3.051 -4.325 -4.950 1.625 -4.828 -10.959 0.059 -11.390 -8.579 3.514 -11.300 -2.291 -9.693 ML 250 248 6 253 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 24 41 -5.720 -0.043 -9.231 -7.399 -8.505 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 89 G C = = MP 255 254 6 259 6 2 2 23 40 -15.963 -15.903 -0.038 -14.679 -7.724 -5.556 -13.283 -3.606 -14.231 1.434 -15.207 -11.972 -9.818 -14.134 -11.863 3.718 -12.143 -4.246 -10.084 -12.333 -12.123 -12.917 ML 256 254 6 259 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 21 39 -8.920 -7.649 -3.558 -7.628 -2.761 -0.404 -2.029 1.693 -2.860 -1.385 D 258 254 6 259 6 0 0 19 37 -14.429 -13.127 -8.924 -9.606 -9.623 -0.007 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 88 G C = = MP 261 260 6 265 4 2 2 21 38 -15.148 -15.355 -0.240 -2.705 -13.545 -1.960 -14.942 0.029 -15.324 -11.766 -2.764 -14.737 -11.838 3.857 -12.069 -3.685 -10.093 -12.188 -12.155 -13.718 ML 262 260 6 265 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 21 40 -7.853 -6.882 -4.749 -0.074 1.583 -1.043 -2.178 -1.750 D 264 260 6 265 4 0 0 19 37 -10.922 -10.603 -4.446 -0.069 IL 265 265 5 265 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 267 266 6 269 3 1 1 19 36 -5.004 -0.063 -6.444 -1.868 -1.576 -3.889 1.733 D 268 266 6 269 3 0 0 18 35 -15.168 -0.335 -2.269 IL 269 269 3 269 3 1 1 19 36 -5.592 -0.035 -8.292 0.000 0.000 0.000 0.000 [ MATL 69 ] 79 - U - + - ML 270 269 3 272 3 1 1 18 35 -16.056 -0.000 -14.710 -0.862 -1.793 -0.751 1.360 D 271 269 3 272 3 0 0 17 34 -13.203 -0.272 -2.542 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 80 - A - + - ML 273 272 3 275 3 1 1 17 34 -16.117 -0.007 -7.617 1.193 0.005 -3.192 -0.735 D 274 272 3 275 3 0 0 14 32 -10.682 -6.195 -0.021 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 81 - A - + - ML 276 275 3 278 3 1 1 16 33 -4.627 -0.069 -7.354 1.590 -1.322 -2.292 -1.375 D 277 275 3 278 3 0 0 11 28 -11.347 -0.246 -2.677 IL 278 278 3 278 3 1 1 18 35 -1.602 -0.580 -9.485 0.000 0.000 0.000 0.000 [ MATL 72 ] 84 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.117 -0.038 -5.281 1.859 -2.576 -3.883 -2.866 D 280 278 3 281 3 0 0 11 30 -10.625 -1.280 -0.767 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 85 - a - + - ML 282 281 3 284 3 1 1 6 10 -5.281 -0.171 -3.543 0.990 0.212 -0.880 -1.682 D 283 281 3 284 3 0 0 3 8 -12.510 -0.852 -1.165 IL 284 284 3 284 3 1 1 6 10 -5.579 -0.035 -8.280 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -3.456 1.171 -5.716 0.712 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Gly LENG 90 MAXL 164 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone Gly-final-vert.cm ../Gly-2nd-align.sto NSEQ 1086 EFFN 13.004128 CKSUM 2291642441 STATS LOCAL MSV -8.7259 0.71858 STATS LOCAL VITERBI -9.5231 0.71858 STATS LOCAL FORWARD -3.8707 0.71858 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15748 1.51943 1.65581 1.28754 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 0.00000 * 1 0.40915 3.96991 1.22720 3.73820 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 2 3.10872 1.06489 2.28114 0.67647 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 3 3.00923 0.82264 2.20137 0.91442 3 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 4 2.61755 1.15651 2.42022 0.64716 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 5 3.04147 1.48383 2.89194 0.40048 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 6 3.32259 1.33947 3.20475 0.41342 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 7 3.75148 0.63165 3.39901 0.88820 7 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 8 3.50198 3.40503 3.85775 0.08824 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.07900 2.67316 4.97272 0.18979 1.75525 1.09861 0.40547 9 0.01751 5.38003 4.97620 5.14188 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 10 3.02594 4.52007 0.07481 4.36795 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 11 4.26983 2.70468 2.63762 0.16535 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 12 0.13516 4.52965 3.05871 2.67811 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 13 2.48262 1.62903 2.47102 0.45278 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 14 0.75033 2.01998 2.69894 1.11518 15 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 15 0.32688 2.45670 2.53053 2.17602 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.14801 4.97272 2.03522 1.46634 0.26236 1.09861 0.40547 16 0.76318 1.66010 2.59149 1.31382 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.47154 4.84064 0.99952 1.46634 0.26236 3.03824 0.04911 17 0.98411 1.57876 2.41549 1.10662 18 a + - _ 1.38629 1.38629 1.38629 1.38629 1.22454 1.94282 0.57482 0.16426 1.88732 0.29061 1.37756 18 0.54440 1.95493 1.80371 2.17550 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02893 4.44370 4.08880 1.46634 0.26236 1.71972 0.19737 19 1.51648 1.54502 1.14122 1.39522 21 g + - _ 1.38629 1.38629 1.38629 1.38629 0.13827 4.55206 2.13205 1.46634 0.26236 2.48470 0.08703 20 2.29339 1.72383 2.96834 0.40151 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.43649 1.07199 4.47694 0.27027 1.44044 0.03422 3.39205 21 0.07270 3.74877 3.89569 3.64046 26 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 22 1.57891 2.64398 0.54873 1.93075 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 23 2.70948 3.33383 4.30669 0.12297 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 24 0.18172 2.67690 2.53878 3.99419 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 25 4.49932 0.26209 4.32159 1.57911 30 C = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 26 0.37120 2.64637 1.94159 2.34640 31 A + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 27 0.89213 1.85595 1.57227 1.48571 32 a = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 28 1.66031 1.63231 1.02829 1.35937 33 g = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 29 2.02127 1.82449 2.20623 0.51735 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 30 3.12816 4.71829 0.06471 4.61184 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 31 0.33871 2.25917 1.93385 3.26278 36 A = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 32 3.69816 0.17416 4.07468 2.13645 37 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 33 4.06203 3.35308 4.57774 0.06451 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 34 3.82891 2.60701 4.33864 0.11490 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 35 5.01395 0.02405 5.36011 4.38881 40 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 36 5.01395 0.02405 5.36011 4.38881 41 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 37 0.01751 5.38003 4.97620 5.14188 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 38 0.09883 2.89500 4.02584 3.86514 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 39 3.44732 2.06560 2.20825 0.31261 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 40 4.75540 0.13061 4.57636 2.26781 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 41 0.61560 2.31691 1.74236 1.68202 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 42 1.63555 1.20773 1.53212 1.23718 47 c = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 43 1.64053 1.38177 1.70282 0.98666 48 u = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 44 1.08325 1.43202 2.60682 1.05294 49 u + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 45 0.47451 2.48967 1.44056 2.84591 50 A + - , 1.38629 1.38629 1.38629 1.38629 1.97698 4.97272 0.15713 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 47 1.80283 1.30599 1.07735 1.49715 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 48 1.80036 1.30674 1.07827 1.49665 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 49 1.79924 1.30709 1.07869 1.49643 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 50 1.79878 1.30723 1.07887 1.49633 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 51 1.79864 1.30727 1.07892 1.49630 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 52 1.79866 1.30727 1.07891 1.49631 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 57 1.72994 1.22034 1.16222 1.53812 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 58 1.72989 1.22036 1.16224 1.53810 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 59 1.72992 1.22035 1.16223 1.53811 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 60 1.73012 1.22027 1.16216 1.53817 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 61 1.73060 1.22006 1.16198 1.53831 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 62 1.73160 1.21963 1.16161 1.53861 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83166 0.00801 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01608 4.13851 64 1.25190 3.88964 0.41241 3.45665 69 G + - , 1.38629 1.38629 1.38629 1.38629 0.02495 4.03300 4.97272 0.65557 0.73219 1.09861 0.40547 65 1.75744 1.75258 2.87596 0.51446 71 U + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 66 3.34785 0.67281 2.37314 1.01783 72 C = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 67 2.41049 1.05527 2.77949 0.69303 73 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 68 2.81314 1.36167 2.18115 0.56065 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.03344 4.97272 3.65092 1.46634 0.26236 1.09861 0.40547 69 1.86698 4.14164 0.20936 3.99476 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.03684 4.95349 3.53648 1.46634 0.26236 1.74923 0.19105 70 2.38945 3.74739 0.14589 3.88807 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.15497 4.93119 1.99261 1.46634 0.26236 1.97389 0.14956 71 2.39290 2.28956 3.20384 0.26564 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05282 3.38741 4.03697 0.43351 1.04478 0.29913 1.35271 72 1.68120 2.16756 1.87969 0.60376 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01455 4.93033 4.93033 1.46634 0.26236 0.40684 1.09588 73 0.69179 1.47472 2.58365 1.63486 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01840 4.96573 4.48620 1.46634 0.26236 1.38777 0.28719 74 0.39362 2.16486 2.54809 2.02196 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05492 3.18730 4.41027 0.58765 0.81110 0.65861 0.72892 75 0.16781 2.83466 3.26916 2.85229 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03638 4.96601 3.54895 1.46634 0.26236 1.03966 0.43630 76 0.82293 1.38672 1.89232 1.83105 85 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11474 3.54651 2.53108 0.43629 1.03967 0.78375 0.61007 77 2.64049 0.66904 3.44709 0.95546 87 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03890 4.88724 3.48626 1.46634 0.26236 0.33760 1.24996 78 4.00864 0.15695 3.59208 2.30708 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.01448 4.93526 4.93526 1.46634 0.26236 0.77906 0.61403 79 4.17681 0.22597 3.95606 1.78514 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.01558 4.95528 0.65558 0.73218 0.45236 1.01095 80 0.61748 2.28337 1.26542 2.56867 91 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 81 0.77267 2.96028 0.95841 2.27387 92 a = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 82 1.08497 2.45736 0.63275 3.09454 93 G = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 83 0.93503 3.69397 0.59301 3.51017 94 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 84 0.41637 3.37982 1.35495 3.02509 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 85 0.49612 3.07045 1.27549 2.72694 96 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 86 0.79159 2.19388 1.06291 2.40856 97 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 87 0.95223 2.30408 0.79548 2.76611 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 88 0.71028 2.38128 1.02409 2.86579 99 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 89 3.79586 1.36498 3.76872 0.35800 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97272 4.97272 1.46634 0.26236 1.09861 0.40547 90 0.01751 5.38003 4.97620 5.14188 101 A + - : 1.38629 1.38629 1.38629 1.38629 0.00700 4.96577 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME His STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone His-final-vert.cm ../His-2nd-align.sto COM [2] cmcalibrate --seed 208 His-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 1206518900 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4742 0.71865 ECMLC 0.60779 -7.62876 2.25245 1600000 486895 0.002465 ECMGC 0.26792 -43.30944 -25.89869 1600000 42454 0.009422 ECMLI 0.61834 -6.93864 2.65596 1600000 452635 0.002651 ECMGI 0.28219 -39.47172 -23.01720 1600000 41556 0.009626 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 124 -15.012 -16.257 -0.024 -5.940 IL 1 1 2 1 4 21 43 100 125 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 44 100 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 106 - C - + MR 3 2 3 5 5 28 48 99 124 -15.037 -0.000 -14.853 -15.065 -15.956 -3.362 1.911 -5.118 -3.158 D 4 2 3 5 5 19 39 94 119 -9.757 -5.112 -7.384 -0.066 -6.809 IR 5 5 3 5 5 21 43 99 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 105 G C = = MP 6 5 3 10 6 28 47 98 123 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -13.769 -10.533 -15.598 -1.827 -15.471 -11.740 -9.830 -15.248 -4.542 3.968 -12.101 -5.294 -10.175 -12.190 -12.252 -14.482 ML 7 5 3 10 6 20 41 96 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 39 92 117 -11.509 -10.238 -6.146 -10.216 -0.028 -8.429 -0.757 -3.358 -4.132 1.702 D 9 5 3 10 6 17 37 93 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 21 42 97 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 42 97 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 104 U A = = MP 12 11 6 16 6 26 45 96 121 -15.971 -5.863 -0.025 -14.687 -14.967 -15.362 -13.023 -13.305 -12.341 -9.542 -3.980 -12.485 1.129 -11.606 -12.444 -9.514 -12.564 -11.710 3.759 -3.147 -3.358 -11.246 ML 13 11 6 16 6 19 40 94 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 38 91 116 -11.509 -10.238 -6.146 -10.216 -5.350 -0.060 1.982 -6.277 -5.665 -5.876 D 15 11 6 16 6 17 37 91 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 20 42 95 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 44 95 120 -6.099 -0.033 -9.610 -7.778 -8.884 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 a u = = MP 18 17 6 22 6 24 43 94 119 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -1.563 2.239 -2.900 2.859 -4.682 -9.032 -1.216 -3.612 -6.108 0.374 -8.852 -1.653 0.329 -8.318 -4.653 -3.878 ML 19 17 6 22 6 18 38 92 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 38 92 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 37 89 114 -14.101 -12.800 -8.597 -9.279 -9.296 -0.009 IL 22 22 5 22 6 20 40 93 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 41 93 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 a u = = MP 24 23 6 28 6 22 41 92 117 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -0.015 -0.238 -3.910 2.860 -2.698 -4.075 -1.665 -6.155 -9.669 2.116 -10.024 -0.877 0.361 -6.148 -4.747 -3.738 ML 25 23 6 28 6 17 37 90 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 37 90 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 17 37 89 114 -14.101 -12.800 -8.597 -9.279 -0.042 -5.372 IL 28 28 5 28 6 17 38 91 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 38 91 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 A U = = MP 30 29 6 34 6 20 39 90 115 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -9.940 -0.821 -9.759 3.262 -5.412 -10.354 -3.171 -4.097 -1.774 2.111 -4.471 -0.822 -1.676 -4.036 -7.963 -4.567 ML 31 29 6 34 6 16 36 88 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 38 89 114 -11.509 -10.238 -0.043 -10.216 -5.350 -8.429 -5.426 -4.947 -6.267 1.975 D 33 29 6 34 6 13 32 86 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 89 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 89 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 U A = = MP 36 35 6 40 6 18 37 88 113 -15.995 -15.934 -0.001 -14.710 -11.434 -15.385 -10.295 -5.952 -5.984 -1.330 -2.155 -11.139 1.638 -5.199 -10.153 -2.264 -10.667 -7.564 3.483 -2.321 -1.375 -2.176 ML 37 35 6 40 6 16 35 87 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 35 86 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 32 85 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 87 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 36 87 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 98 A U = = MP 42 41 6 46 4 16 35 86 111 -15.217 -15.424 -0.000 -13.838 -11.860 -2.861 -11.991 3.762 -13.873 -14.261 -3.128 -12.135 -11.681 0.688 -12.296 -2.079 -1.972 -4.166 -11.092 -5.926 ML 43 41 6 46 4 15 34 86 111 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 33 85 110 -5.414 -4.443 -0.878 -1.371 -0.211 -0.511 -0.833 0.905 D 45 41 6 46 4 13 32 84 109 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 35 87 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 34 86 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 14 33 84 109 -16.127 -0.000 -14.781 -5.690 -5.377 -10.281 1.984 D 49 47 6 50 3 13 32 82 107 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 33 85 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 13 32 83 108 -16.782 -0.000 1.986 -12.001 -4.709 -11.379 D 52 50 3 53 2 12 31 82 107 -8.445 -0.004 IL 53 53 3 53 2 14 32 83 109 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 31 82 107 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 41 59 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 41 59 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 22 41 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 27 G C = = MP 58 57 1 62 6 2 3 22 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.922 -4.542 -13.516 0.639 -14.996 -12.323 -9.842 -13.493 -2.891 3.585 -12.232 1.179 -10.026 -12.549 -12.028 -12.155 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 U A = = MP 64 63 6 68 6 2 3 20 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.045 -13.319 -12.364 -2.907 -10.716 -12.510 -3.400 -11.630 -12.467 -9.530 -12.588 -11.710 3.967 -12.881 -2.924 -11.269 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A = = MP 70 69 6 74 6 2 3 18 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -6.278 -12.508 -1.712 -11.630 -12.468 -9.537 -12.588 -11.733 3.860 -2.888 0.038 -11.270 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 2 16 35 -15.218 -15.425 -0.002 -9.542 -5.609 -13.317 -4.310 -3.085 -10.716 -12.510 -3.321 -3.468 -12.466 -9.529 -12.587 -11.706 3.945 -12.881 -2.245 -11.269 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 14 32 -16.125 -0.000 -14.779 1.857 -2.844 -5.397 -2.221 D 83 81 6 84 3 0 0 16 34 -8.303 -3.816 -0.111 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 12 31 -16.125 -0.352 -2.209 1.849 -3.630 -2.497 -2.836 D 86 84 3 87 3 0 0 15 33 -8.303 -3.816 -0.111 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 11 30 -15.774 -1.237 -0.797 0.368 0.804 -9.014 -0.056 D 89 87 3 90 3 0 0 10 29 -15.346 -10.859 -0.001 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - + - ML 91 90 3 93 3 1 1 10 29 -4.622 -7.640 -0.067 -10.631 1.020 -11.825 0.979 D 92 90 3 93 3 0 0 10 28 -16.964 -1.545 -0.606 IL 93 93 3 93 3 1 1 12 30 -4.759 -0.063 -7.459 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 11 29 -14.093 -0.000 -12.747 1.435 -8.987 0.370 -8.903 D 95 93 3 96 3 0 0 9 27 -17.143 -0.567 -1.622 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - + - ML 97 96 3 99 3 1 1 9 27 -15.721 -3.031 -0.188 1.329 -0.502 -2.023 -0.899 D 98 96 3 99 3 0 0 8 26 -15.522 -11.035 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - C - + - ML 100 99 3 102 3 1 1 7 13 -2.938 -0.202 -11.345 -7.349 1.477 -8.391 0.271 D 101 99 3 102 3 0 0 3 9 -17.407 -0.001 -10.018 IL 102 102 3 102 3 1 1 7 12 -4.614 -0.070 -7.314 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.900 -1.903 -11.412 -10.997 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 26 45 -5.664 -0.029 -14.876 -15.088 -15.980 1.677 -2.499 -0.917 -3.369 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 44 -6.298 -0.029 -7.977 -9.809 -9.082 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 47 U A = = MP 112 111 3 116 6 2 2 25 43 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -5.069 -10.665 -5.095 -3.990 -1.060 -4.868 1.893 -4.416 -2.030 -6.288 -11.187 -8.273 3.455 -3.676 -1.954 -4.754 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 46 U A = = MP 118 117 6 122 6 2 2 23 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -3.578 -12.508 0.909 -4.470 -12.468 -9.537 -12.588 -11.733 3.759 -12.881 -1.328 -4.317 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 45 A U = = MP 124 123 6 128 6 2 2 21 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -1.879 -3.844 -12.232 3.887 -3.166 -15.528 -9.831 -12.275 -11.792 -0.502 -12.462 -4.675 -9.756 -13.537 -11.662 -10.830 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 44 G C = = MP 130 129 6 134 6 2 2 19 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.380 -2.614 -14.405 -0.458 -15.259 -1.669 -9.834 -14.299 -11.896 3.869 -12.162 -3.345 -10.114 -12.329 -12.156 -3.618 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 43 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -3.267 0.073 -2.403 3.532 -10.094 -4.800 -2.658 -3.421 -9.719 0.163 -10.070 -0.651 -0.698 -2.222 -2.722 -4.044 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 14 32 -16.127 -0.000 -14.781 -3.769 0.155 -9.731 1.492 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -5.695 -2.960 -9.916 1.945 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -12.067 -11.343 -5.350 1.991 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - * - ML 154 153 3 156 3 1 1 8 27 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.398 -0.017 -14.781 1.747 -11.075 -0.637 -10.974 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 7 12 -4.592 -0.071 -7.292 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - u - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.423 -0.622 -2.451 0.869 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 50 75 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 5 52 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 5 50 75 -16.127 -0.000 -14.781 1.496 -0.611 -4.713 -1.039 D 167 165 2 168 3 0 3 48 74 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 4 49 74 -16.782 -0.000 1.499 -2.733 -0.076 -3.735 D 170 168 3 171 2 0 3 48 73 -8.445 -0.004 IL 171 171 3 171 2 1 4 50 75 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 48 73 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 37 63 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 39 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - A - + - ML 231 230 2 233 3 1 3 37 63 -5.000 -0.046 -14.781 1.904 -5.420 -4.662 -2.363 D 232 230 2 233 3 0 0 35 61 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 37 63 -5.887 -0.028 -8.587 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - U - + - ML 234 233 3 236 5 1 3 36 62 -15.061 -0.000 -14.876 -15.088 -15.980 -2.890 0.315 -5.987 1.382 D 235 233 3 236 5 0 0 34 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 36 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 97 A U = = MP 237 236 3 241 6 2 3 35 61 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.242 -2.865 -12.232 3.740 -14.373 -15.526 -9.830 -3.235 -11.792 0.373 -12.462 -0.093 -3.257 -13.537 -11.661 -10.830 ML 238 236 3 241 6 1 1 33 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 34 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 96 G C = = MP 243 242 6 247 6 2 3 33 59 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.273 -2.211 -14.736 1.463 -15.035 -4.251 -9.553 -14.809 -11.863 3.652 -12.069 -2.285 -9.887 -3.388 -11.889 -13.683 ML 244 242 6 247 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 33 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 29 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 32 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 95 A U = = MP 249 248 6 253 6 2 2 31 57 -6.034 -15.934 -0.057 -14.710 -14.990 -5.432 -3.665 -0.167 -12.225 3.019 -14.356 -15.468 -9.808 -12.271 -11.789 2.655 -12.457 -1.266 -9.738 -13.513 -11.642 -2.260 ML 250 248 6 253 6 1 1 29 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 28 54 -6.806 -7.069 -4.987 -0.076 -9.500 -9.160 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 94 A U = = MP 255 254 6 259 6 2 2 29 55 -15.938 -15.877 -0.135 -4.205 -5.389 -6.474 -4.206 -0.508 -10.085 3.143 -11.252 -4.781 -3.326 -10.732 -10.441 2.613 -10.720 -3.681 -6.583 -4.117 -8.330 -9.029 ML 256 254 6 259 6 1 1 27 52 -10.894 -11.240 -5.954 -0.029 -11.090 -8.619 1.981 -6.189 -5.583 -5.799 MR 257 254 6 259 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 23 49 -14.615 -13.313 -9.110 -9.793 -9.810 -0.006 IL 259 259 5 259 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 29 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 93 G C = = MP 261 260 6 265 4 2 2 24 46 -15.025 -15.232 -0.002 -9.708 -2.755 -0.524 -11.805 -2.017 -3.505 -12.032 -8.268 -12.144 -11.338 3.866 -11.733 -4.061 -3.443 -11.663 -3.526 -10.601 ML 262 260 6 265 4 1 1 26 51 -1.001 -10.262 -1.008 -8.991 1.215 0.521 -5.496 -2.170 MR 263 260 6 265 4 1 1 32 58 -10.023 -0.037 -6.919 -5.980 -6.148 1.982 -6.600 -5.251 D 264 260 6 265 4 0 0 21 47 -10.581 -10.262 -4.004 -0.095 IL 265 265 5 265 4 1 1 26 51 -1.581 -8.507 -0.594 -10.992 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 31 57 -1.012 -0.993 -9.126 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 1 22 44 -5.170 -0.041 -14.733 -0.419 -0.143 -4.770 1.208 D 268 266 6 269 3 0 0 16 37 -12.642 -0.869 -1.144 IL 269 269 3 269 3 1 1 25 47 -1.240 -0.799 -9.146 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - U - + - ML 270 269 3 272 3 1 1 16 31 -16.105 -0.002 -9.796 -4.235 -1.340 -2.670 1.763 D 271 269 3 272 3 0 0 15 33 -11.510 -0.935 -1.069 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - A - + - ML 273 272 3 275 3 1 1 15 30 -16.115 -0.000 -14.769 1.266 -0.007 -3.380 -0.988 D 274 272 3 275 3 0 0 14 32 -10.660 -0.045 -5.052 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - A - + - ML 276 275 3 278 3 1 1 14 29 -5.686 -0.062 -5.486 1.835 -3.180 -2.169 -3.314 D 277 275 3 278 3 0 0 12 29 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 14 29 -5.241 -0.045 -7.941 0.000 0.000 0.000 0.000 [ MATL 72 ] 86 - A - + - ML 279 278 3 281 3 1 1 13 28 -16.095 -0.004 -8.412 1.711 -1.712 -4.201 -1.450 D 280 278 3 281 3 0 0 10 29 -12.082 -7.595 -0.008 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 87 - A - + - ML 282 281 3 284 3 1 1 12 26 -4.799 -0.129 -4.328 1.108 0.231 -1.659 -1.496 D 283 281 3 284 3 0 0 7 21 -12.252 -1.715 -0.525 IL 284 284 3 284 3 1 1 14 28 -1.911 -0.449 -9.168 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.389 1.118 -3.498 0.443 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME His LENG 90 MAXL 166 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone His-final-vert.cm ../His-2nd-align.sto NSEQ 1085 EFFN 8.927708 CKSUM 1206518900 STATS LOCAL MSV -8.8955 0.71865 STATS LOCAL VITERBI -9.4647 0.71865 STATS LOCAL FORWARD -3.5600 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.12385 1.65320 1.63430 1.24323 1.38629 1.38629 1.38629 1.38629 0.03136 4.71648 3.81986 1.46634 0.26236 0.00000 * 1 3.24438 4.56350 0.06256 4.48920 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 2 3.44151 1.55165 3.22523 0.33360 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 3 0.88692 1.82382 1.55351 1.53635 3 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 4 1.06736 1.88056 1.21402 1.57708 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 5 0.95703 2.36128 0.90812 2.13381 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 0.59658 0.80005 6 2.22570 1.32347 2.11479 0.68292 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01833 4.71648 4.68704 1.46634 0.26236 1.09861 0.40547 7 0.48323 2.93727 1.34149 2.67735 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01806 4.71621 4.71621 1.46634 0.26236 1.07908 0.41538 8 3.50671 3.35994 4.12731 0.08432 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 9 0.04173 4.62193 3.93285 4.47004 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 10 1.95785 3.20023 0.26080 3.04394 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 11 4.60744 3.35811 4.83828 0.05414 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 12 4.24978 2.77769 4.08356 0.09794 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 13 5.20426 4.44507 5.32251 0.02236 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01910 4.71648 4.60807 1.46634 0.26236 1.09861 0.40547 14 0.19391 2.81307 3.25246 2.55663 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01807 4.71545 4.71545 1.46634 0.26236 1.13607 0.38725 15 0.20423 2.97271 2.71413 2.69868 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.21303 4.71545 1.69874 1.46634 0.26236 1.13607 0.38725 16 1.21861 1.03476 2.60526 1.29039 16 c + - _ 1.38629 1.38629 1.38629 1.38629 0.61798 4.52434 0.79823 1.46634 0.26236 3.11523 0.04538 17 2.08332 0.96631 2.64769 0.85759 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.95007 3.15207 0.56120 0.74383 0.64491 1.07196 0.41906 18 0.65387 2.41488 1.35218 2.02558 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04674 3.77959 3.77959 1.46634 0.26236 0.41427 1.08123 19 0.68588 1.72789 2.16508 1.58985 20 A + - _ 1.38629 1.38629 1.38629 1.38629 1.15883 4.49647 0.39305 1.46634 0.26236 3.22181 0.04070 20 1.63537 1.00570 2.14771 1.13141 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.10785 2.67256 3.40628 0.78321 0.61053 0.02459 3.71750 21 0.12663 2.77751 3.64556 3.48531 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71598 4.71598 1.46634 0.26236 1.06273 0.42390 22 0.02735 5.47397 4.17429 4.90683 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 23 0.14510 4.01759 2.31736 3.98810 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 24 0.06581 4.96700 3.12453 4.36055 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 25 3.17721 0.40644 3.00136 1.41649 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 26 0.33778 2.60365 2.00766 2.54664 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.03432 3.69712 4.71648 0.61160 0.78194 1.09861 0.40547 27 2.17701 1.26897 2.03312 0.74534 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 28 3.45826 1.60765 3.23406 0.31641 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 29 0.03989 4.82297 3.79347 4.76261 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 30 1.98723 2.74512 0.31213 2.70604 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 31 0.85312 1.90952 1.48874 1.60889 34 a = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 32 2.68581 1.39074 3.41363 0.43075 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 33 3.32242 2.85715 3.90664 0.12059 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 34 4.23582 5.28474 0.02864 4.74423 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 35 3.49740 3.37962 3.80573 0.09056 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 36 4.23582 5.28474 0.02864 4.74423 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 37 0.23478 3.79812 1.83167 3.62318 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02780 3.99146 4.71648 0.78908 0.60562 1.09861 0.40547 38 1.15292 1.70519 2.23668 0.92700 42 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 39 1.84789 1.53926 1.68221 0.81661 43 u = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 40 3.01231 0.34082 2.70116 1.75731 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 41 4.72376 3.99205 4.77359 0.03645 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 42 0.36933 3.40511 1.46426 3.11569 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 43 0.80470 2.22954 1.17712 1.98752 47 a = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 44 0.49464 1.82137 2.74815 1.80571 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 45 0.45726 2.63933 1.53645 2.52035 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.72075 4.71648 0.20811 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 47 1.80291 1.30596 1.07732 1.49716 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 48 1.80050 1.30670 1.07822 1.49668 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 49 1.79941 1.30704 1.07863 1.49646 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 50 1.79897 1.30717 1.07879 1.49637 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 51 1.79885 1.30721 1.07884 1.49635 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 52 1.79889 1.30720 1.07883 1.49635 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 57 1.73016 1.22025 1.16214 1.53818 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 58 1.73009 1.22028 1.16217 1.53816 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 59 1.73010 1.22027 1.16216 1.53817 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 60 1.73027 1.22020 1.16210 1.53822 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 61 1.73072 1.22001 1.16193 1.53835 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 62 1.73167 1.21960 1.16159 1.53863 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02179 3.83702 64 0.13921 3.38796 3.33000 2.80701 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.04398 3.37910 4.71648 0.46164 0.99493 1.09861 0.40547 65 2.43670 1.27168 3.19534 0.52554 70 U + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 66 0.36627 3.29974 1.48721 3.12832 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 67 1.59877 2.80468 0.40661 2.63911 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 68 0.95924 2.85442 0.72281 2.60585 73 g = - < 1.38629 1.38629 1.38629 1.38629 0.05018 3.85009 3.58778 0.69862 0.68771 1.09861 0.40547 69 0.97614 2.68955 0.73774 2.56220 75 g = - < 1.38629 1.38629 1.38629 1.38629 0.04710 4.69759 3.29977 1.46634 0.26236 1.62760 0.21865 70 1.82756 2.63086 0.38222 2.46711 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.04963 3.26458 4.58514 0.67538 0.71123 0.91630 0.51082 71 1.56274 1.49139 2.66053 0.70225 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04142 3.46153 4.68954 0.81353 0.58571 0.81825 0.58197 72 2.79819 2.19805 2.92387 0.25575 82 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01917 4.70445 4.61239 1.46634 0.26236 0.93270 0.50003 73 0.67434 1.51236 2.49481 1.67342 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01817 4.70996 4.70996 1.46634 0.26236 0.76937 0.62233 74 0.21498 2.88334 2.59302 2.76934 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05281 3.70642 3.61661 0.61659 0.77605 1.09861 0.40547 75 0.32354 2.32107 2.89805 2.09458 86 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02076 4.69839 4.47125 1.46634 0.26236 1.61019 0.22296 76 0.78262 1.40728 2.12335 1.72398 87 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09084 3.27357 3.01657 0.60589 0.78876 1.13642 0.38708 77 1.91681 0.78420 2.74113 1.10279 90 c + - _ 1.38629 1.38629 1.38629 1.38629 0.12159 3.53993 2.45953 0.92591 0.50447 0.42730 1.05632 78 2.69599 0.38970 2.51363 1.74705 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.01968 4.63104 4.63104 1.46634 0.26236 0.59798 0.79833 79 2.82506 0.76706 2.51541 0.92763 94 c = - > 1.38629 1.38629 1.38629 1.38629 0.01864 4.68494 4.68494 1.46634 0.26236 0.36979 1.17402 80 2.91608 0.76080 2.65999 0.89499 95 c = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 81 2.89779 0.45054 2.63590 1.44427 96 C = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 82 3.27585 1.78253 3.22128 0.28223 97 U = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 83 2.91922 1.45981 2.75701 0.43038 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 84 0.79056 2.22750 1.19592 1.99373 99 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 85 2.29919 1.00724 2.17802 0.86472 100 u = - ) 1.38629 1.38629 1.38629 1.38629 0.03136 4.71648 3.81986 1.46634 0.26236 1.09861 0.40547 86 1.64376 1.27587 1.69908 1.06505 101 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 87 1.69163 1.27255 1.62274 1.08380 102 u = - ) 1.38629 1.38629 1.38629 1.38629 0.03249 3.77648 4.70341 0.66290 0.72434 0.59658 0.80005 88 0.37296 3.25191 1.46123 3.20264 104 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 89 4.42832 0.07872 4.42438 2.96062 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03136 4.71648 3.81986 1.46634 0.26236 1.09861 0.40547 90 3.22918 0.12814 3.92075 2.79928 106 C + - : 1.38629 1.38629 1.38629 1.38629 0.00919 4.69430 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Ile STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:54 2015 COM [1] cmbuild --hand --enone Ile-final-vert.cm ../Ile-2nd-align.sto COM [2] cmcalibrate --seed 208 Ile-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 3281815814 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9418 0.71866 ECMLC 0.69666 -6.66771 2.30932 1600000 624061 0.001923 ECMGC 0.31784 -47.24317 -32.30362 1600000 46161 0.008665 ECMLI 0.74118 -5.59712 2.76196 1600000 588705 0.002038 ECMGI 0.34897 -42.42545 -28.92003 1600000 44552 0.008978 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 122 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 16 38 101 123 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 40 102 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - U - + MR 3 2 3 5 5 23 48 100 122 -6.145 -0.021 -14.876 -15.088 -15.980 -0.273 -2.336 -1.618 1.405 D 4 2 3 5 5 14 35 99 120 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 43 100 122 -5.854 -0.039 -9.365 -7.533 -8.639 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 103 G C = = MP 6 5 3 10 6 24 47 99 121 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.583 -10.632 -12.981 2.097 -14.772 -12.797 -9.840 -12.992 -11.846 3.457 -12.301 -0.435 -9.937 -12.794 -11.905 -11.598 ML 7 5 3 10 6 15 36 97 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 36 97 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 33 95 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 38 99 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 38 98 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 102 G C = = MP 12 11 6 16 6 23 45 97 119 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.817 -10.555 -15.721 -2.422 -15.506 -11.754 -9.853 -15.344 -11.916 3.977 -12.122 -3.970 -10.202 -12.207 -12.281 -14.632 ML 13 11 6 16 6 15 36 95 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 36 95 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 33 93 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 37 97 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 38 96 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 101 A U = = MP 18 17 6 22 6 22 43 95 117 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -3.242 -12.232 3.886 -14.362 -15.520 -3.930 -2.254 -11.792 -1.575 -12.462 -1.649 -3.563 -5.333 -11.653 -3.891 ML 19 17 6 22 6 15 36 93 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 36 93 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 32 91 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 37 95 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 37 94 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 100 A U = = MP 24 23 6 28 6 20 41 93 115 -3.718 -15.934 -0.114 -14.710 -14.990 -15.385 -5.067 0.077 -9.789 3.332 -6.072 -0.425 -3.742 -1.013 -10.226 1.414 -10.472 -4.671 -1.485 -1.172 -7.993 -8.754 ML 25 23 6 28 6 15 36 91 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 35 91 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 32 89 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 40 92 113 -9.059 -9.322 -0.007 -10.977 -11.754 -11.414 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 37 92 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 99 a u = = MP 30 29 6 34 6 18 39 91 112 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.654 -2.547 -9.704 2.901 -0.750 -3.309 1.195 -3.715 -9.696 1.453 -10.201 -4.030 1.082 -1.901 -3.243 -8.534 ML 31 29 6 34 6 14 35 89 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 35 89 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 32 87 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 36 90 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 36 90 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 98 U A = = MP 36 35 6 40 6 16 37 89 110 -3.521 -15.934 -0.132 -14.710 -14.990 -15.385 -12.455 -3.831 -12.005 -3.852 1.148 -4.909 1.427 -3.787 -12.033 -8.348 -12.270 -10.409 3.321 -4.634 -0.607 -2.727 ML 37 35 6 40 6 14 34 88 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 34 87 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 32 86 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 36 88 109 -9.254 -9.517 -0.006 -11.172 -11.948 -11.609 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 35 88 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 97 G C = = MP 42 41 6 46 4 14 35 87 108 -15.218 -15.425 -0.000 -13.839 -12.717 -10.620 -13.185 2.251 -14.864 -12.578 -9.843 -13.184 -11.857 3.484 -12.271 -4.501 -9.975 -12.687 -11.957 -11.809 ML 43 41 6 46 4 13 33 87 109 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 33 86 108 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 31 85 107 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 34 88 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 34 87 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 12 33 85 106 -16.127 -0.000 -14.781 -12.760 -5.155 -13.943 1.990 D 49 47 6 50 3 10 31 83 105 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 33 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - G - + - ML 51 50 3 53 2 11 32 84 105 -16.782 -0.000 -4.840 -11.971 1.872 -1.717 D 52 50 3 53 2 10 31 83 104 -8.445 -0.004 IL 53 53 3 53 2 11 32 85 106 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 31 83 104 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 41 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 41 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 41 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 12 28 C G = = MP 58 57 1 62 6 2 3 23 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.046 -13.328 -12.364 -9.565 -2.389 -4.134 3.528 -11.630 -12.468 -9.536 -4.144 -3.402 2.022 -12.881 -8.417 -11.269 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 C G = = MP 64 63 6 68 6 2 3 21 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 3.860 -11.630 -12.468 -9.537 -12.588 -11.733 -3.015 -12.881 0.431 -11.270 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 U A = = MP 70 69 6 74 6 2 3 19 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.856 0.894 -12.508 1.026 -11.630 -12.468 -9.537 -12.588 -11.733 3.573 -12.881 -3.949 -11.270 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 G A = = MP 76 75 6 80 4 2 3 17 35 -15.218 -15.425 -0.000 -13.839 -2.861 -10.710 -12.233 -7.023 -14.199 -15.419 -9.686 -12.266 3.830 -3.561 -12.463 -1.637 0.291 -13.528 -11.532 -10.834 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 14 33 -16.127 -0.115 -3.711 2.000 -12.065 -11.312 -11.398 D 83 81 6 84 3 0 0 17 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 13 32 -16.013 -0.345 -2.231 1.430 -0.956 -0.895 -1.991 D 86 84 3 87 3 0 0 12 30 -13.842 -9.355 -0.002 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - a - + - ML 88 87 3 90 3 1 1 12 31 -15.667 -2.699 -0.241 0.797 0.052 -4.079 0.221 D 89 87 3 90 3 0 0 11 29 -15.675 -11.188 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - + - ML 91 90 3 93 3 1 1 12 31 -12.969 -5.120 -0.042 -0.194 -0.405 -5.995 1.236 D 92 90 3 93 3 0 0 10 29 -17.375 -0.798 -1.235 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - + - ML 94 93 3 96 3 1 2 11 29 -15.167 -0.000 -13.821 0.342 -3.099 1.325 -3.179 D 95 93 3 96 3 0 0 9 27 -16.506 -3.364 -0.147 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - c - + - ML 97 96 3 99 3 1 1 9 28 -15.294 -0.712 -1.360 -0.280 0.719 -2.123 0.380 D 98 96 3 99 3 0 0 7 26 -16.359 -11.872 -0.000 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - c - + - ML 100 99 3 102 3 1 1 6 10 -3.084 -0.181 -13.236 -0.803 0.978 -7.782 0.539 D 101 99 3 102 3 0 0 3 7 -16.942 -0.001 -11.333 IL 102 102 3 102 3 1 1 5 9 -6.243 -0.022 -8.943 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.284 -1.120 -5.946 0.123 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.001 -10.990 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 26 45 -6.466 -0.017 -14.875 -15.087 -15.979 0.816 -3.267 1.037 -3.573 D 110 108 2 111 5 0 0 25 43 -5.708 -0.423 -4.969 -3.344 -3.257 IL 111 111 3 111 5 1 1 26 45 -5.565 -0.048 -7.244 -9.076 -8.349 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 49 u a = = MP 112 111 3 116 6 2 2 25 43 -15.995 -5.984 -0.023 -14.710 -14.990 -15.385 -2.207 -10.027 -10.321 -3.807 1.978 -4.580 1.950 -1.333 -5.441 -4.198 -10.692 -4.669 2.863 -4.780 -5.701 -5.725 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 24 43 -6.009 -0.035 -9.520 -7.688 -8.794 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 47 C G = = MP 118 117 6 122 6 2 2 23 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 3.115 -11.630 -12.468 -9.537 -12.588 -11.733 2.853 -12.881 -3.210 -11.270 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 46 A U = = MP 124 123 6 128 6 2 2 21 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -4.522 -12.232 3.936 -14.364 -15.522 -9.823 -12.274 -11.792 -2.379 -12.462 -7.984 -1.189 -13.537 -11.655 -6.193 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 45 C G = = MP 130 129 6 134 6 2 2 19 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -6.444 -12.508 3.926 -11.630 -12.468 -9.537 -12.588 -11.733 -0.539 -12.881 -3.383 -11.270 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 44 U A = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.501 -3.164 -12.035 -2.997 -0.170 -2.070 0.735 -11.364 -12.069 -3.374 -12.297 -10.492 3.588 -12.455 -0.245 -10.845 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - + - ML 142 141 6 144 3 1 1 14 32 -16.127 -0.000 -14.781 -1.860 -5.069 -5.408 1.876 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - * - ML 154 153 3 156 3 1 1 8 27 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.435 -0.017 -14.781 1.957 -11.845 -3.114 -11.316 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 7 12 -4.560 -0.072 -7.260 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - G - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -1.127 -10.918 1.797 -3.907 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 51 72 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 4 53 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 50 - A - + - ML 166 165 2 168 3 1 3 51 72 -16.127 -0.003 -9.080 1.669 -0.979 -3.888 -2.033 D 167 165 2 168 3 0 1 49 71 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 52 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 51 - U - + - ML 169 168 3 171 2 1 2 50 71 -16.780 -0.000 -0.606 0.143 -5.178 1.145 D 170 168 3 171 2 0 1 49 70 -8.812 -0.003 IL 171 171 3 171 2 1 2 51 72 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 49 70 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 52 69 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 53 68 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 54 67 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 55 66 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 56 65 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 57 64 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 58 63 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.431 -15.112 -3.707 -0.115 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - A - + - ML 216 215 6 218 3 1 1 13 31 -12.448 -0.001 -11.102 1.996 -8.548 -7.799 -7.923 D 217 215 6 218 3 0 0 8 26 -17.429 -12.942 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - A - + - ML 219 218 3 221 3 1 1 12 30 -12.448 -0.001 -11.102 1.996 -8.548 -7.799 -7.923 D 220 218 3 221 3 0 0 7 25 -17.429 -12.942 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - U - + - ML 222 221 3 224 3 1 1 10 28 -12.448 -0.001 -11.102 -8.966 -7.987 -10.112 1.998 D 223 221 3 224 3 0 0 5 24 -17.429 -12.942 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.996 -8.548 -7.799 -7.923 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 37 58 -16.127 -0.115 -3.711 IL 230 230 2 230 3 1 2 39 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 70 - a - + - ML 231 230 2 233 3 1 3 37 58 -0.351 -2.210 -14.667 0.981 -0.291 -3.551 0.168 D 232 230 2 233 3 0 0 36 57 -0.007 -9.355 -8.233 IL 233 233 3 233 3 1 2 36 57 -10.501 -0.001 -13.201 0.000 0.000 0.000 0.000 [ MATL 62 ] 72 - U - + - ML 234 233 3 236 5 1 3 35 56 -15.061 -0.000 -14.876 -15.088 -15.980 -3.505 -0.454 -9.703 1.669 D 235 233 3 236 5 0 0 33 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 35 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 73 96 A U = = MP 237 236 3 241 6 2 3 34 55 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.082 -14.373 -15.520 -9.831 -12.275 -11.792 2.602 -12.462 -2.096 -9.755 -13.536 -11.661 0.290 ML 238 236 3 241 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 74 95 G C = = MP 243 242 6 247 6 2 3 32 53 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.514 -0.627 -10.380 1.109 -11.588 -11.084 -6.670 -10.986 -10.679 3.534 -10.991 0.292 -2.826 -2.700 -8.672 -3.684 ML 244 242 6 247 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 30 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 31 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 75 94 G C = = MP 249 248 6 253 6 2 2 30 51 -5.102 -4.917 -0.095 -10.448 -14.990 -10.441 -2.628 -0.342 -12.377 2.353 -14.454 -14.284 -9.826 -12.416 -11.804 3.295 -12.420 -3.100 -9.792 -13.315 -11.710 -10.979 ML 250 248 6 253 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 28 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 28 50 -7.701 -7.964 -1.269 -0.800 -10.395 -10.056 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 27 49 -7.013 -5.101 -0.060 -8.692 -9.798 0.000 0.000 0.000 0.000 [ MATP 66 ] 77 92 G C = = MP 255 254 6 259 6 2 2 28 49 -15.918 -15.857 -0.017 -8.537 -14.914 -6.787 -13.542 -0.805 -14.950 -0.859 -15.328 -11.760 -9.774 -14.736 -11.832 3.873 -12.063 -5.556 -2.317 -12.184 -12.157 -13.722 ML 256 254 6 259 6 1 1 26 47 -12.593 -12.939 -7.653 -0.028 -12.789 -6.165 1.613 -0.169 -5.515 -5.016 MR 257 254 6 259 6 1 1 27 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 23 45 -10.309 -9.007 -4.804 -5.487 -5.504 -0.125 IL 259 259 5 259 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 27 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 78 91 G C = = MP 261 260 6 265 4 2 2 26 47 -15.124 -15.331 -0.037 -5.301 -3.652 0.815 -13.216 -2.591 -1.791 -12.377 -9.749 -13.206 -11.769 3.773 -12.162 -4.858 -9.902 -12.537 -11.892 -11.845 ML 262 260 6 265 4 1 1 25 46 -9.733 -9.915 -0.007 -8.644 -0.231 1.642 -7.048 -5.724 MR 263 260 6 265 4 1 1 26 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 23 44 -8.863 -8.544 -6.560 -0.022 IL 265 265 5 265 4 1 1 27 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 1 24 45 -4.382 -0.071 -14.732 -1.225 -1.104 -5.937 1.628 D 268 266 6 269 3 0 0 22 44 -12.670 -0.842 -1.177 IL 269 269 3 269 3 1 1 24 46 -2.005 -0.416 -9.531 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - U - + - ML 270 269 3 272 3 1 1 23 44 -16.106 -0.000 -14.760 -1.514 -2.650 -2.786 1.742 D 271 269 3 272 3 0 0 22 43 -11.505 -0.025 -5.896 IL 272 272 3 272 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - a - + - ML 273 272 3 275 3 1 1 22 43 -16.127 -0.044 -5.042 0.950 0.065 -1.380 -0.649 D 274 272 3 275 3 0 0 20 42 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 23 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - A - + - ML 276 275 3 278 3 1 1 21 42 -3.444 -0.289 -3.481 1.678 -2.974 -0.852 -3.063 D 277 275 3 278 3 0 0 20 41 -3.361 -1.318 -0.995 IL 278 278 3 278 3 1 1 22 44 -1.228 -0.805 -10.897 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 9 27 -15.972 -0.021 -6.086 1.963 -4.075 -5.864 -5.372 D 280 278 3 281 3 0 0 9 27 -14.258 -6.989 -0.011 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - A - + - ML 282 281 3 284 3 1 1 6 11 -5.621 -0.041 -6.986 1.243 -1.805 0.223 -2.485 D 283 281 3 284 3 0 0 3 8 -14.424 -9.937 -0.002 IL 284 284 3 284 3 1 1 6 11 -5.138 -0.048 -7.838 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.346 0.783 -5.545 1.143 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ile LENG 90 MAXL 166 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:54 2015 COM [1] cmbuild --hand --enone Ile-final-vert.cm ../Ile-2nd-align.sto NSEQ 1085 EFFN 7.710857 CKSUM 3281815814 STATS LOCAL MSV -8.6995 0.71866 STATS LOCAL VITERBI -9.6403 0.71866 STATS LOCAL FORWARD -3.7425 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30794 1.56279 1.37708 1.31766 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 0.00000 * 1 1.46443 3.31886 0.37138 3.15087 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 2 3.33081 4.57516 0.05871 4.51421 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 3 0.03438 4.86235 4.03806 4.77530 3 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 4 0.98677 1.75075 1.37426 1.60669 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.08284 2.65958 4.65383 0.25302 1.49813 1.09861 0.40547 5 1.20424 1.48691 1.51344 1.37098 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 6 2.15342 1.19631 2.05058 0.79198 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.09249 2.54063 4.65383 0.22632 1.59682 1.09861 0.40547 7 1.41789 3.52826 0.36587 3.35741 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 8 3.79495 3.43448 4.32457 0.07039 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 9 3.03406 3.87084 0.14728 2.68840 11 G + - , 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 10 2.64775 0.60702 2.34284 1.24422 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 11 4.02110 0.20203 3.87864 1.93577 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 12 3.18752 1.23677 3.14080 0.46975 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 13 2.71606 3.44890 0.21311 2.36429 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 14 0.03284 4.73438 4.35635 4.53792 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08284 4.65383 2.65958 1.46634 0.26236 1.09861 0.40547 15 0.59482 1.93070 1.90188 1.87077 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.20579 4.59147 1.73806 1.46634 0.26236 2.23502 0.11316 16 1.01117 1.44962 2.29139 1.20256 18 a + - _ 1.38629 1.38629 1.38629 1.38629 1.03711 4.41028 0.45670 1.46634 0.26236 3.24624 0.03970 17 1.33348 1.57062 1.98440 0.93889 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.43730 3.43948 1.13276 1.46634 0.26236 0.56949 0.83429 18 1.19853 2.39763 0.74210 2.03015 20 g + - _ 1.38629 1.38629 1.38629 1.38629 0.03145 4.16810 4.16810 1.46634 0.26236 2.17762 0.12026 19 1.40300 1.17314 2.11632 1.12617 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.34877 4.22697 1.27351 1.46634 0.26236 3.67570 0.02566 20 1.53698 1.08258 2.30462 1.06001 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.11252 2.44699 3.91874 0.40909 1.09140 0.03531 3.36122 21 0.68950 1.91146 2.54157 1.30354 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 22 0.20853 2.95613 3.25878 2.32518 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 23 0.38524 3.30515 1.46012 2.97968 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 24 2.81186 4.01085 0.10706 3.75867 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 25 1.34194 2.54676 0.56718 2.37295 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.01960 4.65383 4.61660 1.46634 0.26236 1.09861 0.40547 26 0.93195 2.68626 0.80658 2.38927 29 g + - , 1.38629 1.38629 1.38629 1.38629 0.02839 3.99181 4.65346 0.83308 0.57041 1.07395 0.41803 27 1.99554 1.02508 1.94856 1.01387 31 u = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 28 3.55870 0.67452 3.34641 0.85117 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 29 0.10605 4.39028 2.83938 3.51468 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 30 4.14429 0.14012 4.01463 2.33469 34 C = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 31 2.18282 1.38899 2.07855 0.66779 35 U = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 32 2.45014 2.90018 3.39560 0.19215 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 33 4.06240 3.82361 4.61284 0.05022 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 34 4.08352 5.11164 0.03355 4.59343 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 35 0.03284 4.73438 4.35635 4.53792 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 36 4.06240 3.82361 4.61284 0.05022 40 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 37 0.07564 4.15785 3.24060 4.01367 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02860 3.98101 4.65383 0.82516 0.57654 1.09861 0.40547 38 2.08711 3.61678 0.21922 3.08045 43 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 39 0.74168 2.16914 1.28560 2.01796 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 40 2.56397 4.15848 0.11959 3.90752 45 G = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 41 3.62860 3.14724 4.18765 0.08851 46 U = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 42 0.91603 3.51014 0.62824 3.31118 47 G = - > 1.38629 1.38629 1.38629 1.38629 0.03212 3.81274 4.65383 0.71406 0.67266 1.09861 0.40547 43 0.88601 2.11364 1.20122 1.79530 49 a = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 44 0.36707 2.04091 2.76764 2.16704 50 A + - , 1.38629 1.38629 1.38629 1.38629 0.02070 4.65383 4.51352 1.46634 0.26236 1.09861 0.40547 45 1.62483 1.35055 2.65899 0.74668 51 u + - , 1.38629 1.38629 1.38629 1.38629 1.65666 4.65239 0.22354 1.46634 0.26236 1.14760 0.38184 46 1.80805 1.30439 1.07542 1.49819 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 47 1.80296 1.30595 1.07731 1.49717 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 48 1.80056 1.30668 1.07820 1.49669 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 49 1.79949 1.30701 1.07860 1.49648 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 50 1.79907 1.30714 1.07876 1.49639 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 51 1.79895 1.30718 1.07880 1.49637 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 52 1.79900 1.30716 1.07878 1.49638 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.45994 0.08931 53 0.51484 2.20645 2.02655 1.82931 59 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07317 3.34451 3.34451 1.46634 0.26236 4.37751 0.01264 54 0.51484 2.20645 2.02655 1.82931 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07317 3.34451 3.34451 1.46634 0.26236 4.37751 0.01264 55 1.68670 1.83976 2.13564 0.62018 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07317 3.34451 3.34451 1.46634 0.26236 4.37751 0.01264 56 0.51484 2.20645 2.02655 1.82931 62 A + - _ 1.38629 1.38629 1.38629 1.38629 0.34878 3.34451 1.35027 1.46634 0.26236 4.37751 0.01264 57 1.73026 1.22020 1.16210 1.53821 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 58 1.73018 1.22024 1.16213 1.53819 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 59 1.73019 1.22024 1.16213 1.53819 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 60 1.73035 1.22017 1.16207 1.53824 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 61 1.73078 1.21998 1.16191 1.53837 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 62 1.73171 1.21959 1.16157 1.53864 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.45418 0.01170 63 1.73350 1.21882 1.16092 1.53917 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02353 3.76104 64 0.89601 1.59090 2.32377 1.23733 70 a + - , 1.38629 1.38629 1.38629 1.38629 0.89714 0.54001 4.65383 0.03238 3.44648 1.09861 0.40547 65 2.65707 1.76671 3.36883 0.32224 72 U + - , 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 66 0.90810 3.06077 0.79678 2.31182 73 g = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 67 1.62101 2.74575 0.42441 2.47756 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 68 1.24590 2.83787 0.53595 2.67870 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.04371 3.42076 4.59729 0.50663 0.92262 1.09861 0.40547 69 2.29355 3.53206 0.18587 3.23227 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.02678 4.65327 4.08093 1.46634 0.26236 1.11781 0.39600 70 1.73717 2.59094 0.39752 2.56336 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.03886 4.64588 3.55733 1.46634 0.26236 1.34302 0.30253 71 2.01189 1.98594 3.00365 0.38654 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05897 3.04756 4.62679 0.54929 0.86124 0.81418 0.58520 72 2.14816 2.46133 2.77904 0.30669 82 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01946 4.64203 4.64203 1.46634 0.26236 0.64001 0.74926 73 0.90374 1.47686 1.99029 1.46994 83 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04154 4.65383 3.46853 1.46634 0.26236 1.09861 0.40547 74 0.36061 2.63783 1.95616 2.40982 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.17657 2.50297 2.52552 0.67479 0.71185 0.96259 0.48111 75 0.09281 3.52248 3.52424 3.51895 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03261 4.56963 3.82951 1.46634 0.26236 2.38471 0.09664 76 0.70941 2.17406 1.38188 1.94319 88 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04359 3.64464 4.10283 0.67028 0.71655 2.52703 0.08327 77 2.39168 0.99972 3.00324 0.71149 90 u + - _ 1.38629 1.38629 1.38629 1.38629 0.05068 4.55274 3.24734 1.46634 0.26236 0.42701 1.05687 78 2.69516 0.37977 2.53596 1.77629 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02025 4.60263 4.60263 1.46634 0.26236 0.56359 0.84203 79 3.43171 0.18569 3.38172 2.27160 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.01953 4.63895 4.63895 1.46634 0.26236 0.57903 0.82199 80 2.85975 0.56291 2.64278 1.19732 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 81 2.80079 0.49813 2.55045 1.37229 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 82 3.12229 0.89096 2.85524 0.71715 96 u = - > 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 83 3.58373 0.40301 3.34147 1.31476 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 84 0.80530 2.19404 1.21073 1.94073 98 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 85 1.52568 1.58637 1.37924 1.12058 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 86 1.86082 1.31178 1.69480 0.93782 100 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 87 5.07109 4.30671 4.84701 0.02799 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 88 4.63544 0.07285 4.46267 3.01535 102 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01923 4.65383 4.65383 1.46634 0.26236 1.09861 0.40547 89 3.40776 0.44911 3.13127 1.25518 103 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03069 3.87784 4.65383 0.75528 0.63465 1.09861 0.40547 90 1.47187 2.17089 2.14314 0.61777 105 U + - : 1.38629 1.38629 1.38629 1.38629 0.00966 4.64426 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME LeuTAA STATES 289 NODES 76 CLEN 90 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:54 2015 COM [1] cmbuild --hand --enone Leu-TAA-final-vert.cm ../Leu-TAA-2nd-align.sto COM [2] cmcalibrate --seed 208 Leu-TAA-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1087 EFFN 1087.000000 CKSUM 1125709857 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.6229 0.71866 ECMLC 0.78361 -5.53918 2.23016 1600000 528717 0.002270 ECMGC 0.29879 -57.99731 -42.62612 1600000 39507 0.010125 ECMLI 0.80926 -4.78896 2.66060 1600000 498183 0.002409 ECMGI 0.31002 -53.57542 -38.85656 1600000 38352 0.010430 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 119 -15.014 -16.260 -0.000 -12.713 IL 1 1 2 1 4 23 45 102 121 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 47 103 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 106 - U - + MR 3 2 3 5 5 31 55 101 119 -15.063 -0.000 -14.879 -15.091 -15.982 0.683 -2.062 -9.824 1.107 D 4 2 3 5 5 21 42 99 118 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 23 45 101 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 105 G C = = MP 6 5 3 10 6 31 54 100 118 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -11.097 -1.077 -11.027 2.253 -12.218 -11.356 -7.272 -11.601 -11.037 3.329 -4.040 -1.473 -2.265 -3.845 -9.293 -9.942 ML 7 5 3 10 6 22 43 98 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 22 43 98 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 19 40 96 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 23 45 99 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 23 45 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 104 U A = = MP 12 11 6 16 6 31 52 98 116 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -13.049 -13.330 -12.366 -9.566 -3.209 -12.511 2.055 -4.422 -12.470 -9.538 -12.590 -11.733 3.461 -2.936 -1.776 -1.981 ML 13 11 6 16 6 22 43 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 22 43 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 19 40 94 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 22 44 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 45 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 103 U A = = MP 18 17 6 22 6 29 50 96 114 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -4.272 -4.149 -12.366 -4.099 -4.665 -12.511 -1.860 -11.633 -12.470 -9.536 -12.590 -11.724 3.948 -5.028 -6.107 -4.751 ML 19 17 6 22 6 22 43 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 22 43 94 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 19 40 92 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 22 44 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 22 44 95 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 102 A U = = MP 24 23 6 28 6 27 48 94 112 -6.464 -15.937 -0.017 -14.713 -10.952 -15.388 -2.870 -0.353 -10.122 3.470 -4.050 -10.791 -6.373 -4.958 -10.491 1.716 -10.775 -2.209 -1.597 -4.427 -8.376 -6.450 ML 25 23 6 28 6 22 43 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 22 43 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 19 39 90 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 24 47 93 111 -6.404 -6.667 -0.042 -8.322 -9.098 -8.758 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 22 44 93 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 101 g c = = MP 30 29 6 34 6 25 46 92 110 -15.997 -15.936 -0.001 -10.519 -14.992 -15.387 -9.967 -0.630 -9.785 2.785 -4.584 -4.610 -5.982 -5.422 -10.224 2.862 -10.470 -0.159 -3.385 -5.450 -7.990 -4.430 ML 31 29 6 34 6 21 42 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 21 42 90 109 -7.710 -6.439 -0.761 -6.417 -1.551 -4.630 -0.344 0.837 -1.073 -0.074 D 33 29 6 34 6 18 39 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 22 43 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 22 43 91 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 100 G C = = MP 36 35 6 40 6 23 44 90 108 -15.996 -15.936 -0.000 -14.712 -14.992 -15.387 -5.784 -1.623 -9.783 0.668 -4.581 -1.076 -2.406 -4.287 -5.955 3.490 -10.468 -0.159 -0.850 -1.228 -7.988 -2.503 ML 37 35 6 40 6 21 42 89 107 -7.261 -7.607 -0.507 -2.016 -7.457 -4.987 -0.435 -1.430 1.217 -0.826 MR 38 35 6 40 6 20 41 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 18 39 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 21 42 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 21 42 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 99 G C = = MP 42 41 6 46 4 21 42 88 106 -15.220 -5.166 -0.041 -13.841 -12.109 -6.814 -12.249 0.991 -13.318 -11.580 -8.258 -12.753 -11.494 3.625 -3.351 0.379 -2.256 -4.371 -10.350 -11.163 ML 43 41 6 46 4 20 41 87 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 19 40 87 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 18 39 86 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 21 42 88 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 20 41 87 105 -5.731 -0.032 -8.431 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 19 40 86 104 -16.130 -0.008 -7.558 -4.438 -11.291 -12.935 1.983 D 49 47 6 50 3 18 39 84 103 -6.174 -1.687 -0.566 IL 50 50 3 50 3 20 41 88 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 18 39 85 103 -16.777 -0.000 -1.496 -12.368 1.866 -11.376 D 52 50 3 53 2 17 38 84 102 -9.328 -0.002 IL 53 53 3 53 2 19 40 86 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 17 38 84 102 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 18 47 64 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 18 47 64 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 5 29 46 -0.000 -14.125 -13.532 -14.172 [ MATP 15 ] 11 33 G C = = MP 58 57 1 62 6 2 6 29 46 -15.997 -15.937 -0.001 -10.916 -14.993 -15.388 -13.741 -10.561 -15.419 -2.023 -15.470 -11.788 -9.855 -15.121 -11.916 3.933 -12.131 -1.055 -10.193 -12.230 -12.266 -14.259 ML 59 57 1 62 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 32 C G = = MP 64 63 6 68 6 2 4 27 44 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -12.812 -13.053 -8.430 -12.838 -6.665 -7.913 3.998 -14.108 -14.762 -11.332 -7.938 -13.104 -9.919 -13.721 -11.122 -13.282 ML 65 63 6 68 6 1 1 27 45 -7.063 -7.409 -2.124 -0.485 -7.259 -4.789 -0.351 0.845 -1.081 -0.078 MR 66 63 6 68 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 31 A U = = MP 70 69 6 74 6 2 2 25 42 -15.997 -15.936 -0.016 -14.712 -7.595 -7.428 -2.984 -2.510 -12.234 3.955 -14.320 -3.595 -9.788 -12.274 -11.796 -7.364 -12.464 -7.989 -9.739 -3.425 -11.624 -10.833 ML 71 69 6 74 6 1 1 26 44 -7.063 -7.409 -2.124 -0.485 -7.259 -4.789 1.212 -1.117 -0.861 -0.572 MR 72 69 6 74 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 30 G U = = MP 76 75 6 80 4 2 3 23 40 -6.326 -15.411 -0.018 -13.825 -0.797 -3.531 -4.351 -2.908 -3.038 -15.510 -3.859 -12.260 2.251 -0.197 -1.423 3.143 -9.740 -13.523 -11.644 -2.987 ML 77 75 6 80 4 1 1 25 43 -4.403 -4.586 -0.303 -3.315 -0.250 -1.199 1.048 -0.609 MR 78 75 6 80 4 1 1 23 42 -7.997 -7.026 -0.114 -3.954 1.929 -4.254 -3.733 -3.965 D 79 75 6 80 4 0 0 22 40 -8.135 -7.816 -0.100 -4.087 IL 80 80 5 80 4 1 1 24 42 -5.826 -6.509 -0.045 -8.995 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 2 20 36 -16.130 -0.000 -14.784 1.989 -12.019 -5.105 -11.387 D 83 81 6 84 3 0 0 22 41 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - G - + - ML 85 84 3 87 3 1 2 19 35 -16.130 -0.000 -14.784 -1.905 -4.507 1.870 -4.911 D 86 84 3 87 3 0 0 21 40 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - C - + - ML 88 87 3 90 3 1 1 18 34 -16.130 -0.037 -5.314 -2.714 1.725 -5.378 -0.952 D 89 87 3 90 3 0 0 20 38 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - C - + - ML 91 90 3 93 3 1 1 17 32 -0.054 -4.764 -14.747 -1.475 1.645 -5.209 -1.044 D 92 90 3 93 3 0 0 15 31 -12.254 -0.015 -6.646 IL 93 93 3 93 3 1 1 16 31 -6.034 -0.022 -13.456 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - + - ML 94 93 3 96 3 1 1 15 30 -16.130 -0.000 -14.784 -2.155 -12.411 1.916 -11.396 D 95 93 3 96 3 0 0 17 36 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - + - ML 97 96 3 99 3 1 1 14 28 -16.130 -0.000 -14.784 -3.641 -12.430 1.971 -11.404 D 98 96 3 99 3 0 0 16 34 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 13 26 -0.185 -3.052 -14.784 -1.243 0.021 -4.514 1.333 D 101 99 3 102 3 0 0 9 22 -6.174 -1.687 -0.566 IL 102 102 3 102 3 1 1 12 25 -2.140 -0.371 -13.710 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.849 -2.188 -5.991 -2.613 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.130 -0.000 -14.784 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - A - + - ML 109 108 2 111 5 1 1 26 45 -5.742 -0.027 -14.879 -15.091 -15.982 1.658 -3.043 -0.632 -3.703 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -6.228 -0.030 -7.907 -9.739 -9.013 0.000 0.000 0.000 0.000 [ MATP 30 ] 36 52 A U = = MP 112 111 3 116 6 2 2 25 44 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -1.287 -2.073 -3.423 3.188 -4.110 -5.299 -1.232 -7.791 -4.461 0.359 -8.082 -2.156 1.937 -4.011 -2.543 -6.708 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 37 51 A U = = MP 118 117 6 122 6 2 2 23 42 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -11.999 -1.916 -12.178 3.800 -14.250 -3.874 -9.668 -4.024 -11.770 0.317 -12.427 -2.106 -3.483 -4.554 -11.518 -3.906 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 38 50 A U = = MP 124 123 6 128 6 2 2 21 40 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -12.039 -3.293 -12.235 3.907 -14.376 -15.531 -9.834 -12.277 -11.795 -0.315 -12.465 -3.440 -9.758 -13.540 -11.664 -10.833 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 49 G C = = MP 130 129 6 134 6 2 2 19 38 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -12.817 -5.575 -13.340 1.997 -14.930 -12.450 -9.845 -13.330 -11.866 3.538 -12.255 -1.433 -10.003 -12.621 -11.994 -11.971 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 48 g c = = MP 136 135 6 140 4 2 2 17 35 -15.220 -15.427 -0.000 -13.841 -11.749 2.536 -11.844 1.697 -13.609 -1.834 -8.875 -4.439 -11.608 2.662 -12.189 -3.047 -8.968 -2.776 -10.796 -5.080 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.130 -0.000 -14.784 -10.126 1.828 -5.864 -1.215 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - C - + - ML 145 144 3 147 3 1 1 13 31 -16.130 -0.000 -14.784 -5.746 1.301 -10.172 0.601 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.130 -0.000 -14.784 -13.415 -12.035 -14.993 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.130 -0.000 -14.784 2.000 -12.068 -11.314 -11.401 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.130 -0.000 -14.784 2.000 -12.068 -11.314 -11.401 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.130 -0.000 -14.784 0.547 -10.739 1.331 -5.417 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.048 1.484 -5.662 -2.743 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 47 66 -16.130 -0.000 -14.784 IL 165 165 2 165 3 1 4 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 53 - c - + - ML 166 165 2 168 3 1 3 47 66 -16.130 -0.000 -14.784 0.098 0.527 -2.350 0.371 D 167 165 2 168 3 0 1 46 65 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 54 - a - + - ML 169 168 3 171 2 1 2 46 65 -16.785 -0.000 0.725 0.180 -2.899 0.112 D 170 168 3 171 2 0 1 45 64 -8.445 -0.004 IL 171 171 3 171 2 1 2 47 66 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 45 64 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 25 44 -7.821 -14.125 -13.532 -0.007 [ MATP 48 ] 55 72 g c = = MP 174 173 1 178 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 38 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 178 178 5 178 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 56 71 g c = = MP 180 179 6 184 6 2 2 29 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 36 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 184 184 5 184 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 57 70 g c = = MP 186 185 6 190 6 2 2 27 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 190 190 5 190 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 58 69 g c = = MP 192 191 6 196 6 2 2 25 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 13 32 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 196 196 5 196 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 59 68 g c = = MP 198 197 6 202 6 2 2 23 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 12 30 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 202 202 5 202 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 60 67 g c = = MP 204 203 6 208 6 2 2 21 39 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 11 29 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 208 208 5 208 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 61 66 g c = = MP 210 209 6 214 4 2 2 19 37 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 10 29 -15.433 -15.115 -5.523 -0.032 IL 214 214 5 214 4 1 1 20 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - C - + - ML 216 215 6 218 3 1 1 13 32 -10.707 -0.003 -9.361 -4.000 1.292 -5.071 0.545 D 217 215 6 218 3 0 0 8 27 -17.515 -6.164 -0.020 IL 218 218 3 218 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - C - + - ML 219 218 3 221 3 1 1 12 31 -11.367 -1.279 -0.767 -6.781 1.988 -7.235 -5.855 D 220 218 3 221 3 0 0 6 25 -17.495 -13.008 -0.000 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - C - + - ML 222 221 3 224 3 1 1 12 30 -10.092 -3.195 -0.168 -5.405 1.969 -5.889 -4.508 D 223 221 3 224 3 0 0 5 24 -17.527 -13.040 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 28 46 -16.130 -0.000 -14.784 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 73 - A - + - ML 231 230 2 233 3 1 2 28 46 -0.981 -1.019 -14.784 1.091 0.291 -3.079 -0.921 D 232 230 2 233 3 0 0 26 44 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 27 46 -4.810 -0.053 -12.597 0.000 0.000 0.000 0.000 [ MATL 62 ] 76 - C - + - ML 234 233 3 236 5 1 1 26 45 -15.063 -0.000 -14.879 -15.091 -15.982 -3.703 1.889 -5.307 -2.368 D 235 233 3 236 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 77 97 A U = = MP 237 236 3 241 6 2 2 25 44 -15.997 -6.133 -0.021 -14.713 -14.993 -15.388 -12.039 -5.335 -12.235 3.783 -14.376 -15.531 -9.834 -3.760 -11.795 0.907 -12.465 -2.371 -9.758 -4.007 -11.664 -10.833 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 24 43 -5.875 -0.038 -9.386 -7.554 -8.660 0.000 0.000 0.000 0.000 [ MATP 64 ] 78 95 G C = = MP 243 242 6 247 6 2 2 23 42 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -3.850 -2.609 -14.105 -0.017 -15.196 -12.056 -9.851 -14.027 -11.893 3.884 -12.187 -6.300 -10.103 -12.398 -12.135 -12.778 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 79 94 A U = = MP 249 248 6 253 6 2 2 21 40 -6.266 -5.529 -0.051 -14.713 -14.993 -15.388 -12.040 -1.587 -12.236 3.528 -14.376 -15.518 -9.834 -12.278 -11.795 1.921 -12.464 -1.556 -9.759 -13.538 -11.665 -10.834 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 20 39 -6.589 -6.852 -0.037 -8.507 -9.283 -8.943 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 20 39 -6.434 -0.026 -9.945 -8.112 -9.218 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 92 G C = = MP 255 254 6 259 6 2 2 19 37 -15.997 -15.936 -0.000 -14.713 -14.993 -15.388 -13.461 -2.194 -14.516 -0.340 -14.767 -4.995 -2.293 -14.715 -11.840 3.817 -12.034 -8.354 -0.601 -12.004 -11.670 -13.527 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 91 G C = = MP 261 260 6 265 4 2 2 17 35 -15.220 -15.427 -0.001 -10.785 -13.837 -1.942 -15.801 -1.060 -15.518 -11.750 -9.856 -15.402 -11.920 3.931 -12.123 -8.472 -10.208 -12.206 -12.288 -14.733 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 83 - U - + - ML 267 266 6 269 3 1 1 14 32 -16.129 -0.000 -14.783 -4.075 -5.336 -9.996 1.969 D 268 266 6 269 3 0 0 18 36 -7.390 -0.508 -1.782 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 84 - U - + - ML 270 269 3 272 3 1 1 13 31 -16.130 -0.000 -14.784 -9.194 -5.204 -3.100 1.947 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 85 - C - + - ML 273 272 3 275 3 1 1 12 30 -16.130 -0.000 -14.784 -11.594 1.983 -12.061 -4.468 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 86 - A - + - ML 276 275 3 278 3 1 1 10 29 -16.130 -0.000 -14.784 1.988 -12.016 -5.002 -11.386 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.130 -0.000 -14.784 1.991 -12.020 -11.325 -5.350 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - A - + - ML 282 281 3 284 3 1 1 6 11 -5.522 -0.032 -14.784 1.240 -0.117 -1.328 -1.651 D 283 281 3 284 3 0 0 5 10 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 6 11 -5.396 -0.040 -8.096 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -9.073 -2.553 -5.227 1.926 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME LeuTAA LENG 90 MAXL 175 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:55 2015 COM [1] cmbuild --hand --enone Leu-TAA-final-vert.cm ../Leu-TAA-2nd-align.sto NSEQ 1087 EFFN 4.938572 CKSUM 1125709857 STATS LOCAL MSV -9.0052 0.71866 STATS LOCAL VITERBI -9.7579 0.71866 STATS LOCAL FORWARD -3.3688 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35924 1.39646 1.40763 1.38250 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 0.00000 * 1 1.40533 2.54628 0.54483 2.33921 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 2 2.27234 1.18772 2.06491 0.76532 2 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 3 3.82457 3.08422 3.66111 0.09794 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 4 1.01428 2.13154 0.98378 1.93251 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03507 3.85715 4.31717 0.96767 0.47798 1.09861 0.40547 5 1.24611 2.40679 0.66094 2.24518 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02635 4.34271 4.34271 1.46634 0.26236 1.08143 0.41417 6 1.66712 2.18535 0.58031 1.97294 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 7 1.74168 2.65051 0.40441 2.44424 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 8 2.94631 2.99202 3.59277 0.13954 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.03022 4.34305 4.08833 1.46634 0.26236 1.09861 0.40547 9 2.29097 3.71866 0.17496 3.35024 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.02644 4.33928 4.33928 1.46634 0.26236 0.93620 0.49777 10 2.85068 3.92352 0.10494 3.81459 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 11 4.21230 0.08793 4.09032 2.94449 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 12 0.03859 4.66643 4.03996 4.52382 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.03443 4.34305 3.87056 1.46634 0.26236 1.09861 0.40547 13 1.64163 1.71374 0.83910 1.63964 14 g = - < 1.38629 1.38629 1.38629 1.38629 0.03569 3.81854 4.33517 0.94272 0.49359 0.80955 0.58889 14 0.07270 4.00197 3.51633 3.81082 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 15 2.23537 3.24761 0.22091 2.94902 17 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 16 2.31927 0.40579 3.06981 1.66721 18 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04495 4.34305 3.47516 1.46634 0.26236 1.09861 0.40547 17 1.98407 0.50516 2.87521 1.59612 19 C + - _ 1.38629 1.38629 1.38629 1.38629 1.23922 0.36075 4.32493 0.05165 2.98894 0.60958 0.78434 18 2.60644 3.93851 0.12991 3.55589 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 19 3.12037 4.28711 0.08204 3.86906 23 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 20 1.76457 1.44455 2.52599 0.66766 24 U + - _ 1.38629 1.38629 1.38629 1.38629 1.06419 0.44317 4.34305 0.28542 1.39311 1.09861 0.40547 21 0.27145 2.47904 2.82974 2.35518 29 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03097 4.34305 4.04573 1.46634 0.26236 1.09861 0.40547 22 1.52829 1.65328 1.51294 0.99045 30 u = - > 1.38629 1.38629 1.38629 1.38629 0.02646 4.33854 4.33854 1.46634 0.26236 0.93045 0.50150 23 4.72263 4.18229 4.51359 0.03575 31 U = - > 1.38629 1.38629 1.38629 1.38629 0.02635 4.34271 4.34271 1.46634 0.26236 1.10743 0.40109 24 3.21574 4.22995 0.07639 3.97017 32 G = - > 1.38629 1.38629 1.38629 1.38629 0.02635 4.34271 4.34271 1.46634 0.26236 1.08121 0.41428 25 3.94351 0.14273 3.73747 2.40994 33 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 26 0.43049 2.50484 1.81056 2.25801 34 A + - , 1.38629 1.38629 1.38629 1.38629 0.04014 3.63626 4.34305 0.80151 0.59539 1.09861 0.40547 27 1.16944 1.67774 1.48875 1.28370 36 a = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 28 0.47717 2.56896 1.54357 2.41653 37 A = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 29 0.20720 3.82803 1.98765 3.56230 38 A = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 30 1.56114 3.08127 0.37029 2.92486 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 31 1.16579 2.23771 0.77986 2.09435 40 g = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 32 2.87791 0.26439 3.43215 1.93963 41 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 33 2.37298 0.68769 3.01522 1.03556 42 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 34 3.50765 3.33151 4.04868 0.08681 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 35 0.05825 4.16787 3.81587 3.95889 44 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 36 0.05825 4.16787 3.81587 3.95889 45 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 37 1.07451 2.98328 0.63120 2.57762 46 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 38 1.42135 0.64802 2.70622 1.77939 47 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 39 2.36752 0.64429 2.09432 1.35442 48 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 40 3.16973 0.43213 2.89264 1.37267 49 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 41 3.76108 2.23614 3.61421 0.17087 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 42 2.67131 1.65063 2.39916 0.43369 51 U = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 43 1.43766 1.62073 1.46999 1.09412 52 u = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 44 1.29016 1.25358 2.13743 1.13527 53 u + - , 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 45 1.05130 1.41541 2.16420 1.22810 54 a + - , 1.38629 1.38629 1.38629 1.38629 1.34732 4.34305 0.31874 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 47 1.80312 1.30590 1.07725 1.49721 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 48 1.80082 1.30660 1.07810 1.49674 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 49 1.79981 1.30691 1.07848 1.49654 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 50 1.79943 1.30703 1.07862 1.49646 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 51 1.79935 1.30705 1.07865 1.49645 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 52 1.79942 1.30703 1.07862 1.49646 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.27599 0.03851 53 1.29545 1.40012 1.75753 1.18029 62 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09020 3.14368 3.14368 1.46634 0.26236 3.48274 0.03121 54 1.36146 1.16797 1.84061 1.29464 63 c + - _ 1.38629 1.38629 1.38629 1.38629 0.14300 3.17524 2.39179 1.46634 0.26236 4.02552 0.01802 55 1.24381 1.37888 1.70333 1.28093 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.12855 3.12429 2.56831 1.46634 0.26236 4.04653 0.01764 56 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 57 1.73066 1.22003 1.16196 1.53833 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 58 1.73055 1.22008 1.16200 1.53830 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 59 1.73052 1.22009 1.16201 1.53829 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 60 1.73064 1.22004 1.16197 1.53832 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 61 1.73101 1.21988 1.16183 1.53843 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 62 1.73185 1.21953 1.16152 1.53868 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.05944 0.01741 63 1.73350 1.21882 1.16092 1.53917 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03513 3.36630 64 0.85507 1.40666 2.22485 1.50642 73 a + - , 1.38629 1.38629 1.38629 1.38629 0.49167 0.97977 4.34305 0.10022 2.35009 1.09861 0.40547 65 2.80213 0.22207 3.44428 2.23930 76 C + - , 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 66 0.50504 2.74333 1.35252 2.60944 77 A = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 67 2.01507 3.03742 0.27035 2.88930 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 68 0.66218 2.97002 0.99101 2.78434 79 A = - < 1.38629 1.38629 1.38629 1.38629 0.03596 3.80198 4.34305 0.92331 0.50617 1.09861 0.40547 69 1.94631 2.65710 0.35803 2.43047 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 70 2.57175 3.74119 0.13565 3.62205 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02670 4.34305 4.31599 1.46634 0.26236 1.09861 0.40547 71 2.82141 2.83661 3.46643 0.16178 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02635 4.34270 4.34270 1.46634 0.26236 1.08065 0.41457 72 2.75682 2.69564 2.97140 0.20117 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 73 3.76476 0.08913 4.28701 3.02918 85 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 74 0.07368 3.99177 3.49953 3.80082 86 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 75 0.06953 3.99977 3.71143 3.71301 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 76 0.76965 1.60452 1.95407 1.63916 88 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04243 3.55614 4.34305 0.74820 0.64096 1.09861 0.40547 77 2.77564 2.46179 3.20984 0.20820 90 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 78 3.80808 0.15113 3.57474 2.40743 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 79 2.64371 0.40157 2.48882 1.73372 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.04243 3.55614 4.34305 0.74820 0.64096 1.09861 0.40547 80 3.01746 1.10085 2.76874 0.58744 94 U = - > 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 81 3.09402 0.30811 2.84746 1.82108 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.03690 3.76233 4.34305 0.89266 0.52689 1.09861 0.40547 82 2.86349 1.50305 2.58144 0.43879 97 U = - > 1.38629 1.38629 1.38629 1.38629 0.04698 3.41428 4.34305 0.66183 0.72547 1.09861 0.40547 83 2.70305 0.50615 2.43828 1.41521 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02681 4.34305 4.30804 1.46634 0.26236 1.09861 0.40547 84 2.26638 0.64099 2.08308 1.40650 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02635 4.34259 4.34259 1.46634 0.26236 1.07541 0.41727 85 2.50140 0.74804 2.23458 1.08560 101 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 86 2.14031 1.05430 1.94845 0.93790 102 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 87 0.10849 3.81604 2.91860 3.61974 103 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 88 0.88954 2.21551 1.06251 2.00641 104 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 89 2.61174 0.61005 2.34512 1.24677 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02634 4.34305 4.34305 1.46634 0.26236 1.09861 0.40547 90 1.09458 1.99257 2.38690 0.82768 106 u + - : 1.38629 1.38629 1.38629 1.38629 0.01326 4.32997 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME LeuTAG STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:55 2015 COM [1] cmbuild --hand --enone Leu-TAG-final-vert.cm ../Leu-TAG-2nd-align.sto COM [2] cmcalibrate --seed 208 Leu-TAG-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 3929892251 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.3260 0.71873 ECMLC 0.63125 -7.30419 2.38044 1600000 542240 0.002213 ECMGC 0.31002 -53.68567 -38.11610 1600000 49932 0.008011 ECMLI 0.60672 -7.30405 2.66757 1600000 508909 0.002358 ECMGI 0.31292 -49.99297 -34.68609 1600000 48113 0.008314 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 118 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 18 40 101 120 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 42 102 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - U - + MR 3 2 3 5 5 23 50 100 119 -15.061 -0.004 -14.876 -8.609 -15.980 0.671 -5.005 -4.422 1.220 D 4 2 3 5 5 15 36 99 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 40 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 G C = = MP 6 5 3 10 6 25 49 99 118 -15.991 -15.930 -0.000 -14.707 -14.987 -15.382 -3.247 -3.121 -11.809 2.645 -13.523 -13.469 -8.762 -12.035 -11.577 3.122 -12.136 -1.345 -1.248 -12.413 -10.697 -10.519 ML 7 5 3 10 6 17 38 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 40 98 116 -9.141 -7.870 -0.238 -7.848 -2.982 -6.061 1.818 -2.947 -2.522 -2.548 D 9 5 3 10 6 13 35 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 39 99 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 C G = = MP 12 11 6 16 6 24 47 97 116 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -2.795 -3.461 -12.508 3.948 -11.630 -12.468 -9.537 -4.020 -11.733 -2.064 -12.881 -5.378 -11.270 ML 13 11 6 16 6 17 38 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 38 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 35 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 39 97 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 39 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 U A = = MP 18 17 6 22 6 23 45 95 114 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.435 -2.073 -12.508 0.561 -11.630 -12.468 -9.537 -12.588 -11.733 3.816 -12.881 -6.220 -11.270 ML 19 17 6 22 6 17 38 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 38 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 35 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 39 95 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 39 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 U A = = MP 24 23 6 28 6 21 43 93 112 -6.389 -15.934 -0.017 -14.710 -14.990 -15.385 -10.030 -3.332 -10.068 1.496 -2.564 -0.106 -1.384 -0.302 -9.970 -2.130 -10.490 -7.556 3.206 -0.953 -1.826 -0.931 ML 25 23 6 28 6 16 37 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 37 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 34 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 42 92 111 -6.471 -6.734 -0.040 -8.389 -9.165 -8.826 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 38 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 95 U A = = MP 30 29 6 34 6 19 41 91 109 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.469 -10.181 -3.636 -4.686 -2.549 -11.262 2.709 -3.133 -10.316 -2.318 -10.816 -7.757 3.046 -5.114 -1.005 -3.959 ML 31 29 6 34 6 16 37 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 37 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 38 91 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 38 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 94 U A = = MP 36 35 6 40 6 17 39 89 107 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.175 -12.957 -12.223 -2.389 -3.581 -12.437 -0.128 -11.517 -3.323 -3.794 -12.464 -11.099 3.766 -12.694 -0.029 -11.084 ML 37 35 6 40 6 15 37 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 36 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 37 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 37 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 93 A U = = MP 42 41 6 46 4 15 37 87 105 -15.218 -15.425 -0.014 -6.684 -12.037 -10.697 -4.013 3.589 -14.373 -15.528 -9.831 -12.275 -11.792 1.829 -12.462 -1.889 -9.755 -13.537 -11.661 -3.781 ML 43 41 6 46 4 14 36 88 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 35 87 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 34 86 106 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 37 89 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 36 88 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 13 36 85 103 -16.113 -0.000 -14.767 1.822 -4.258 -3.099 -1.759 D 49 47 6 50 3 11 34 83 102 -10.907 -3.285 -0.157 IL 50 50 3 50 3 13 36 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 12 35 84 102 -16.770 -0.000 1.957 -11.122 -4.082 -4.111 D 52 50 3 53 2 11 34 83 101 -9.707 -0.002 IL 53 53 3 53 2 12 35 85 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 34 83 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 2 15 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 2 15 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 4 24 42 -0.001 -14.122 -10.950 -14.170 [ MATP 15 ] 11 29 G C = = MP 58 57 1 62 6 2 6 24 42 -15.994 -15.933 -0.000 -14.710 -14.990 -15.385 -2.843 -10.566 -14.855 -1.678 -15.373 -11.865 -9.850 -14.671 -11.905 3.958 -12.146 -8.421 -10.160 -12.278 -12.219 -13.603 ML 59 57 1 62 6 1 2 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 25 43 -7.642 -6.371 -0.809 -6.350 -1.483 -4.563 -0.283 0.768 -1.006 -0.032 D 61 57 1 62 6 0 1 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 G C = = MP 64 63 6 68 6 2 6 22 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.868 -2.704 -15.950 -2.352 -15.531 -11.735 -9.853 -15.506 -3.461 3.959 -12.117 -8.475 -10.210 -12.195 -12.292 -14.928 ML 65 63 6 68 6 1 2 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 1 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 A U = = MP 70 69 6 74 6 2 6 20 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.608 -3.031 -12.232 3.959 -14.373 -15.528 -9.831 -12.275 -11.792 -2.117 -12.462 -7.983 -9.756 -13.537 -11.661 -10.830 ML 71 69 6 74 6 1 2 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 1 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 U A = = MP 76 75 6 80 4 2 4 18 36 -15.218 -15.425 -0.008 -7.482 -0.630 -3.061 -5.414 -1.695 -3.071 -2.715 -1.247 -4.612 -3.719 -3.493 -10.361 -7.473 3.746 -5.379 -4.380 -0.970 ML 77 75 6 80 4 1 2 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 2 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 1 23 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 3 15 34 -16.119 -0.000 -14.773 1.931 -6.153 -2.683 -5.784 D 83 81 6 84 3 0 0 17 35 -10.141 -5.654 -0.030 IL 84 84 3 84 3 1 2 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 2 14 32 -16.119 -0.000 -14.773 1.633 -4.024 -0.280 -6.144 D 86 84 3 87 3 0 0 16 35 -10.141 -5.654 -0.030 IL 87 87 3 87 3 1 2 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - c - + - ML 88 87 3 90 3 1 1 13 31 -16.119 -4.542 -0.063 -0.606 0.996 -2.909 0.282 D 89 87 3 90 3 0 0 16 34 -10.141 -0.065 -4.533 IL 90 90 3 90 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 13 31 -1.589 -0.585 -10.408 -0.580 0.012 -0.836 0.817 D 92 90 3 93 3 0 0 11 29 -17.475 -0.000 -11.867 IL 93 93 3 93 3 1 1 12 31 -4.986 -0.053 -7.686 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 11 29 -16.127 -0.000 -14.781 1.975 -5.119 -5.165 -6.221 D 95 93 3 96 3 0 0 16 34 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - G - + - ML 97 96 3 99 3 1 1 9 27 -16.127 -0.015 -6.599 -10.652 -12.409 2.000 -11.399 D 98 96 3 99 3 0 0 15 33 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 7 13 -1.491 -0.634 -14.766 -1.375 0.421 -6.013 1.176 D 101 99 3 102 3 0 0 6 12 -2.787 -0.267 -5.386 IL 102 102 3 102 3 1 1 7 13 -4.466 -0.067 -12.091 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - C - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.229 1.039 -4.687 -0.445 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.008 -7.462 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - a - + - ML 109 108 2 111 5 1 1 26 45 -15.052 -0.000 -14.868 -15.080 -15.972 0.969 -2.374 0.848 -4.308 D 110 108 2 111 5 0 0 25 44 -8.193 -0.067 -7.454 -5.829 -5.741 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = MP 112 111 3 116 6 2 2 25 44 -6.453 -15.934 -0.017 -14.710 -14.990 -15.385 -3.935 -4.192 -4.113 -3.059 -0.262 -1.167 0.330 -1.472 -3.183 -3.164 -8.774 -4.839 3.262 -1.706 1.364 -3.735 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 24 43 -6.412 -6.675 -0.042 -8.330 -9.106 -8.767 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 47 U A = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -9.565 -2.194 -12.508 -0.772 -11.630 -3.117 -2.206 -12.588 -11.732 3.884 -12.881 -3.377 -11.269 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 46 G C = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.769 -10.557 -15.530 -0.906 -15.482 -11.773 -9.853 -15.204 -11.915 3.949 -12.126 -5.827 -10.195 -12.220 -12.270 -14.394 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 45 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.708 -2.757 -15.313 -1.442 -15.452 -11.797 -9.852 -15.038 -11.912 3.902 -12.131 -0.919 -10.186 -12.236 -12.257 -14.131 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 44 U A = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -13.032 -13.305 -12.356 -2.052 -5.254 -12.504 0.866 -11.623 -12.458 -9.500 -12.581 -11.690 3.667 -3.084 -0.188 -2.281 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -10.107 1.818 -5.595 -1.144 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.785 -5.277 -13.978 1.991 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.001 -10.270 -2.848 -12.422 1.949 -11.399 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.564 -1.386 -4.727 -0.681 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 49 68 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 3 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - ML 166 165 2 168 3 1 2 49 68 -16.127 -0.138 -3.451 1.660 -1.338 -2.667 -1.801 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - + - ML 169 168 3 171 2 1 1 48 67 -16.644 -0.000 1.382 -1.283 -0.218 -3.027 D 170 168 3 171 2 0 0 47 66 -12.410 -0.000 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -2.796 -14.122 -13.529 -0.225 [ MATP 48 ] 51 70 A U = = MP 174 173 1 178 6 2 2 30 48 -13.218 -13.157 -0.001 -11.934 -12.214 -12.609 -10.845 -10.519 -5.971 3.993 -11.425 -11.504 -9.677 -5.793 -11.024 -7.087 -11.151 -6.171 -9.797 -11.444 -10.457 -5.966 ML 175 173 1 178 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 18 37 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 178 178 5 178 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 69 C A = = MP 180 179 6 184 6 2 2 28 46 -13.218 -13.157 -0.001 -11.934 -12.214 -12.609 -10.107 -9.980 -9.532 -6.244 3.984 -9.799 -3.722 -8.854 -9.576 -6.338 -9.756 -7.871 -4.728 -10.106 -5.711 -8.406 ML 181 179 6 184 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 16 35 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 184 184 5 184 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 68 U A = = MP 186 185 6 190 6 2 2 26 44 -0.067 -13.157 -4.476 -11.934 -12.214 -12.609 -12.348 -12.023 -12.205 -11.234 -10.410 -12.080 -9.751 -11.868 -10.359 -11.250 -12.403 -11.810 3.996 -10.460 -5.701 -5.497 ML 187 185 6 190 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 14 33 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 190 190 5 190 6 1 1 24 42 -9.926 -10.189 -0.004 -11.844 -12.620 -12.281 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 55 67 U A = = MP 192 191 6 196 6 2 2 23 41 -13.218 -13.157 -0.001 -11.934 -12.214 -12.609 -12.348 -12.023 -12.205 -11.234 -10.410 -12.080 -9.751 -11.868 -10.359 -11.250 -12.403 -11.810 3.996 -10.460 -5.701 -5.497 ML 193 191 6 196 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 196 196 5 196 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 56 66 U C = = MP 198 197 6 202 6 2 2 21 39 -13.218 -13.157 -4.476 -11.934 -12.214 -0.067 -9.660 -8.717 -9.479 -5.017 -8.719 -10.460 -4.413 -9.078 -9.287 -5.299 -9.706 -6.127 -5.310 3.985 -6.390 -8.224 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 57 65 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 58 64 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.431 -15.112 -2.834 -0.218 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - G - + - ML 216 215 6 218 3 1 1 12 30 -13.308 -0.001 -11.962 -7.865 -9.639 1.997 -8.626 D 217 215 6 218 3 0 0 8 26 -17.326 -12.839 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - G - + - ML 219 218 3 221 3 1 1 10 29 -13.308 -0.001 -11.962 -7.865 -9.639 1.997 -8.626 D 220 218 3 221 3 0 0 7 25 -17.326 -12.839 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - U - + - ML 222 221 3 224 3 1 1 5 8 -0.017 -6.411 -11.962 -10.211 -9.042 -11.531 1.999 D 223 221 3 224 3 0 0 1 5 -17.326 -12.839 -0.000 IL 224 224 3 224 3 1 1 4 7 -7.998 -7.354 -0.015 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 28 46 -16.127 -0.507 -1.754 IL 230 230 2 230 3 1 2 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - A - + - ML 231 230 2 233 3 1 1 28 46 -0.467 -1.854 -14.274 1.830 -1.699 -4.974 -3.243 D 232 230 2 233 3 0 0 26 44 -15.793 -0.001 -10.185 IL 233 233 3 233 3 1 1 27 45 -5.425 -0.034 -12.582 0.000 0.000 0.000 0.000 [ MATL 62 ] 74 - U - + - ML 234 233 3 236 5 1 1 26 44 -15.061 -0.000 -14.876 -15.088 -15.980 -0.644 0.012 -4.148 1.199 D 235 233 3 236 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 75 92 C G = = MP 237 236 3 241 6 2 2 25 43 -15.995 -15.934 -0.220 -14.710 -2.825 -15.385 1.185 -13.329 -4.286 -9.565 -1.296 -12.508 3.656 -11.630 -12.468 -9.537 -12.588 -11.733 -0.616 -12.881 -8.417 -11.270 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 76 91 U A = = MP 243 242 6 247 6 2 2 23 42 -15.775 -15.714 -0.000 -14.491 -14.771 -15.166 -12.826 -13.108 -12.143 -2.653 -3.569 -12.288 -1.444 -11.409 -12.247 -9.316 -12.367 -11.511 3.905 -12.660 -3.062 -1.784 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 21 40 -14.587 -13.316 -9.225 -13.294 -0.003 -11.508 1.998 -9.368 -8.605 -8.718 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 77 90 U A = = MP 249 248 6 253 6 2 2 21 40 -6.147 -15.714 -0.021 -14.491 -14.771 -15.166 -2.225 -13.108 -12.143 -2.857 -1.668 -12.288 -1.286 -11.409 -12.247 -9.316 -12.367 -11.511 3.883 -12.660 -2.596 -11.049 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 20 39 -14.587 -13.316 -0.005 -13.294 -8.428 -11.508 1.998 -9.368 -8.605 -8.718 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 21 39 -6.492 -6.755 -0.040 -8.410 -9.187 -8.847 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 79 89 G C = = MP 255 254 6 259 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.856 -10.554 -15.893 -1.663 -15.525 -11.739 -9.853 -15.466 -11.918 3.971 -12.118 -8.473 -10.208 -12.198 -12.289 -14.853 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 80 88 G C = = MP 261 260 6 265 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -13.951 -1.626 -16.397 -8.037 -15.570 -11.706 -9.854 -15.799 -3.427 3.961 -12.111 -8.488 -10.222 -12.176 -12.310 -15.556 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 81 - U - + - ML 267 266 6 269 3 1 1 14 33 -16.127 -0.000 -14.781 -12.351 -3.322 -13.393 1.963 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - G - + - ML 270 269 3 272 3 1 1 13 31 -16.127 -0.000 -14.781 -10.663 -12.404 1.985 -4.611 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - C - + - ML 273 272 3 275 3 1 1 12 30 -16.127 -0.000 -14.781 -5.891 1.986 -10.620 -5.529 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - A - + - ML 276 275 3 278 3 1 1 11 29 -16.127 -0.001 -10.839 1.983 -5.954 -5.032 -11.078 D 277 275 3 278 3 0 0 15 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 9 28 -16.126 -0.000 -14.780 1.988 -12.005 -11.325 -4.930 D 280 278 3 281 3 0 0 14 32 -7.408 -0.500 -1.800 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - a - + - ML 282 281 3 284 3 1 1 7 26 -16.127 -0.005 -8.224 0.855 0.839 -2.142 -2.504 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -5.646 -3.313 -9.938 1.955 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME LeuTAG LENG 90 MAXL 173 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:55 2015 COM [1] cmbuild --hand --enone Leu-TAG-final-vert.cm ../Leu-TAG-2nd-align.sto NSEQ 1085 EFFN 4.267254 CKSUM 3929892251 STATS LOCAL MSV -8.8549 0.71873 STATS LOCAL VITERBI -9.7728 0.71873 STATS LOCAL FORWARD -4.0629 0.71873 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26970 1.50837 1.37306 1.40861 1.38629 1.38629 1.38629 1.38629 0.03128 4.23137 4.11911 1.46634 0.26236 0.00000 * 1 1.30127 2.47115 0.62030 2.24863 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02955 4.22964 4.22964 1.46634 0.26236 1.02519 0.44430 2 3.58834 0.14473 3.45442 2.58369 2 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 3 2.77426 1.46381 2.65752 0.45235 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 4 1.53129 1.49083 1.67725 0.98974 4 u = - ( 1.38629 1.38629 1.38629 1.38629 0.03794 3.78573 4.23137 1.00134 0.45790 1.09861 0.40547 5 2.15767 1.04325 1.94376 0.94435 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 6 2.29491 1.50935 2.09713 0.58812 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 7 0.70235 2.71946 1.02348 2.53420 8 a = - ( 1.38629 1.38629 1.38629 1.38629 0.03630 4.23137 3.85790 1.46634 0.26236 1.09861 0.40547 8 0.32658 2.59998 2.48234 2.11372 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02969 4.22477 4.22477 1.46634 0.26236 1.19731 0.35955 9 0.13505 3.41604 3.03324 3.09383 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.02997 4.22539 4.20579 1.46634 0.26236 0.88312 0.53357 10 2.26633 3.14098 0.21836 3.01114 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23108 4.23108 1.46634 0.26236 1.08559 0.41204 11 2.61192 3.55405 0.14401 3.43821 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 12 0.13398 3.90091 2.52286 3.69127 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 13 1.85410 1.69348 1.86735 0.68321 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03338 4.23137 4.00107 1.46634 0.26236 1.09861 0.40547 14 0.16670 3.26755 2.69633 3.03669 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02961 4.22760 4.22760 1.46634 0.26236 1.18141 0.36650 15 0.43798 2.66450 1.63656 2.40371 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02961 4.22760 4.22760 1.46634 0.26236 1.18141 0.36650 16 1.52184 1.01371 2.27631 1.15152 17 c + - _ 1.38629 1.38629 1.38629 1.38629 1.14004 4.22760 0.40705 1.46634 0.26236 0.95111 0.48827 17 1.23547 1.55709 1.66242 1.17482 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12080 2.62501 3.18562 0.90808 0.51633 0.04290 3.17030 18 0.11485 3.47169 3.20033 3.30536 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 19 3.42002 4.37819 0.06706 3.93204 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03565 4.23137 3.88777 1.46634 0.26236 1.09861 0.40547 20 1.75118 1.26759 2.50931 0.76874 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.31547 1.36282 4.22539 0.14967 1.97325 0.88312 0.53357 21 1.27725 1.00331 2.35953 1.34682 25 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 22 0.76250 2.01365 1.51425 1.71465 26 a = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 23 3.80659 2.77966 3.69600 0.11553 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 24 3.54922 0.16952 3.37538 2.37539 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 25 3.14340 0.25869 2.94647 2.02287 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.03346 4.23137 3.99690 1.46634 0.26236 1.09861 0.40547 26 0.88276 2.27679 1.04686 2.01961 30 a + - , 1.38629 1.38629 1.38629 1.38629 0.02961 4.22752 4.22752 1.46634 0.26236 0.94855 0.48988 27 1.70024 1.44997 1.69041 0.92045 31 u = - < 1.38629 1.38629 1.38629 1.38629 0.03757 3.80131 4.23137 1.01468 0.45023 1.09861 0.40547 28 2.87153 1.83173 2.55381 0.34890 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 29 2.68926 3.79877 0.12217 3.70198 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 30 2.49561 3.50594 0.15858 3.37617 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 31 2.21753 1.37656 2.04286 0.67527 36 U = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 32 2.70684 0.30473 3.26186 1.84762 37 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 33 3.18387 2.97884 3.71295 0.12407 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 34 3.32345 3.17312 3.86110 0.10419 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 35 0.07074 3.97972 3.63985 3.75704 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 36 3.42002 4.37819 0.06706 3.93204 41 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 37 2.78357 3.96968 0.11520 3.57143 42 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03004 4.23137 4.19570 1.46634 0.26236 1.09861 0.40547 38 0.57273 1.98240 2.36908 1.58617 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02951 4.23084 4.23084 1.46634 0.26236 1.07497 0.41750 39 0.81752 2.19469 1.17571 1.97703 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 40 3.58701 0.19722 3.33401 2.15712 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 41 3.88273 0.14511 3.64041 2.42771 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 42 0.38311 2.74614 1.69886 2.64233 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 43 1.12044 1.80457 1.22836 1.52996 48 a = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 44 0.49202 2.04243 2.28245 1.85237 49 A + - , 1.38629 1.38629 1.38629 1.38629 0.09582 4.23137 2.56602 1.46634 0.26236 1.09861 0.40547 45 0.69638 1.98263 1.60811 1.81007 50 a + - , 1.38629 1.38629 1.38629 1.38629 0.88754 4.16704 0.55716 1.46634 0.26236 1.98617 0.14760 46 1.03951 1.80945 1.15216 1.79172 51 a = - < 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 47 2.05231 0.82079 1.80268 1.32193 52 c = - < 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 48 2.09574 1.33324 1.67543 0.85291 53 u = - < 1.38629 1.38629 1.38629 1.38629 0.35636 1.32891 3.35209 0.24626 1.52196 3.76698 0.02339 49 2.09026 1.33416 1.67486 0.85418 55 u = - < 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 50 1.75431 1.52094 1.22184 1.15906 56 u = - < 1.38629 1.38629 1.38629 1.38629 0.35636 3.35209 1.32891 1.46634 0.26236 3.76698 0.02339 51 1.79932 1.30706 1.07866 1.49644 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.90825 0.02028 52 1.79977 1.30693 1.07849 1.49653 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 1.88506 0.16466 53 1.61187 2.28283 0.60837 1.86915 59 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 54 1.61187 2.28283 0.60837 1.86915 60 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 55 1.69204 1.84349 2.14158 0.61595 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 56 1.13112 1.65303 1.51838 1.32128 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.35636 3.35209 1.32891 1.46634 0.26236 3.76698 0.02339 57 1.73100 1.21989 1.16183 1.53843 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.90825 0.02028 58 1.73060 1.22006 1.16198 1.53831 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 1.88506 0.16466 59 1.70753 1.07563 1.33978 1.53386 66 c = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 60 0.98664 1.83608 1.16957 1.85005 67 a = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 61 0.98633 1.83654 1.16889 1.85165 68 a = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 62 1.09139 1.96304 1.01026 1.83449 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 63 2.02113 1.34764 1.63113 0.88690 70 u = - > 1.38629 1.38629 1.38629 1.38629 0.35636 3.35209 1.32891 1.46634 0.26236 0.24319 1.53306 64 0.37767 2.23469 2.45140 2.10913 71 A + - , 1.38629 1.38629 1.38629 1.38629 0.63676 0.79234 4.00575 0.09892 2.36248 0.12596 2.13409 65 1.55614 1.44717 2.35766 0.77833 74 u + - , 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 66 1.84448 0.69264 2.06977 1.53516 75 C = - < 1.38629 1.38629 1.38629 1.38629 0.13431 4.23137 2.19692 1.46634 0.26236 1.09861 0.40547 67 2.95760 2.00019 2.78516 0.28631 76 U = - < 1.38629 1.38629 1.38629 1.38629 0.03270 4.12977 4.12977 1.46634 0.26236 2.26676 0.10942 68 2.62864 1.87562 2.50048 0.36742 77 U = - < 1.38629 1.38629 1.38629 1.38629 0.04223 3.67840 4.12977 0.99648 0.46073 0.23230 1.57361 69 2.82476 3.85158 0.10955 3.76394 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 70 2.60853 3.52828 0.14628 3.40864 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 71 2.97995 2.66393 3.50039 0.16329 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 72 3.26881 4.16521 0.08448 3.59601 82 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 73 3.42109 0.11176 4.01895 2.89882 83 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 74 0.09994 3.63922 3.27384 3.47454 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02985 4.23137 4.20772 1.46634 0.26236 1.09861 0.40547 75 0.08687 3.78493 3.51698 3.48010 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02951 4.23102 4.23102 1.46634 0.26236 1.08290 0.41341 76 0.96434 1.18684 2.11038 1.64824 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.23137 4.08710 1.46634 0.26236 1.09861 0.40547 77 2.79344 2.58706 3.34526 0.18838 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02956 4.22911 4.22911 1.46634 0.26236 1.00478 0.45590 78 3.47412 0.17048 3.32893 2.40879 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 79 3.76812 0.13918 3.61605 2.52646 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 80 0.40262 2.65907 1.74742 2.43958 90 A = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 81 0.33470 2.90937 1.85589 2.60877 91 A = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 82 1.46516 2.23749 0.63684 2.01536 92 G = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 83 2.79595 1.16973 2.50193 0.60410 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 84 0.69284 2.28645 1.29034 2.09524 94 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 85 1.08978 2.11184 0.92124 1.93332 95 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 86 1.17268 1.73214 1.37707 1.34231 96 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 87 0.49533 2.82615 1.36963 2.56147 97 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 88 2.80259 3.65681 0.12789 3.39387 98 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 89 2.46073 0.71043 2.28133 1.13618 99 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 90 1.11452 2.15872 2.30278 0.78422 100 u + - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.21673 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Lys STATES 289 NODES 76 CLEN 90 W 129 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:56 2015 COM [1] cmbuild --hand --enone Lys-final-vert.cm ../Lys-2nd-align.sto COM [2] cmcalibrate --seed 208 Lys-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1062 EFFN 1062.000000 CKSUM 2088274238 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8923 0.71864 ECMLC 0.61319 -8.05449 2.04950 1600000 588772 0.002038 ECMGC 0.30672 -45.67808 -30.50342 1600000 42020 0.009519 ECMLI 0.62258 -7.40661 2.43771 1600000 550707 0.002179 ECMGI 0.31721 -41.39172 -26.87305 1600000 40014 0.009997 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 129 200 -14.981 -16.226 -0.002 -9.883 IL 1 1 2 1 4 18 40 130 201 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 42 130 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 126 - A - + MR 3 2 3 5 5 25 48 129 200 -15.028 -0.000 -14.844 -15.056 -15.948 1.717 -4.440 -0.712 -4.153 D 4 2 3 5 5 15 36 127 198 -6.429 -1.784 -4.056 -0.867 -3.481 IR 5 5 3 5 5 17 39 129 200 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 125 C G = = MP 6 5 3 10 6 25 47 128 199 -15.963 -15.902 -0.000 -14.678 -14.958 -15.353 -13.014 -13.295 -6.088 -2.376 -3.495 -12.476 3.952 -11.598 -12.435 -3.611 -12.555 -11.697 -4.622 -12.848 -3.226 -11.237 ML 7 5 3 10 6 16 37 126 197 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 38 127 198 -8.130 -6.859 -0.527 -6.837 -1.971 -5.051 -0.697 -1.753 1.397 -1.140 D 9 5 3 10 6 13 33 122 193 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 38 127 198 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 39 127 198 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 124 A U = = MP 12 11 6 16 6 24 45 126 197 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -12.005 -3.788 -12.200 3.702 -14.339 -15.486 -9.796 -2.167 -11.761 0.799 -12.430 -0.723 -2.472 -13.502 -11.627 -2.588 ML 13 11 6 16 6 16 37 124 195 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 37 124 195 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 33 120 191 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 38 125 196 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 38 125 196 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 123 C G = = MP 18 17 6 22 6 23 43 124 195 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -4.527 -13.289 -12.330 -3.739 -2.715 -12.476 3.317 -11.596 -12.433 -9.492 -12.554 -11.685 2.430 -12.846 -1.439 -11.234 ML 19 17 6 22 6 16 37 122 193 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 37 122 193 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 33 118 189 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 38 123 194 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 38 123 194 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 122 U A = = MP 24 23 6 28 6 21 41 122 193 -5.158 -15.903 -0.041 -14.680 -14.959 -15.354 -13.014 -13.296 -12.332 -3.119 -1.190 -2.492 -0.483 -11.598 -4.597 -9.503 -12.556 -11.698 3.820 -12.849 -2.095 -2.716 ML 25 23 6 28 6 15 36 120 191 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 36 120 191 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 33 116 187 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 40 121 192 -7.616 -7.879 -0.018 -9.534 -10.311 -9.971 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 38 121 192 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 121 A U = = MP 30 29 6 34 6 19 39 120 191 -15.964 -6.684 -0.014 -14.680 -14.959 -15.354 -2.586 -1.520 -5.747 3.660 -11.926 -11.500 -4.013 -11.188 -10.870 1.154 -11.233 -1.530 -7.263 -5.636 -3.607 -3.576 ML 31 29 6 34 6 15 36 118 189 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 35 118 189 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 115 186 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 37 119 190 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 38 119 190 -5.354 -0.056 -8.865 -7.033 -8.138 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 119 A U = = MP 36 35 6 40 6 17 37 118 189 -5.878 -15.903 -0.025 -14.680 -14.959 -15.354 -4.769 0.623 -9.827 3.316 -3.355 -10.499 -1.521 -5.125 -10.068 1.047 -10.422 -4.472 0.544 -9.777 -2.052 -2.514 ML 37 35 6 40 6 15 35 117 188 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 116 187 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 114 185 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 117 188 -6.924 -7.187 -0.029 -8.843 -9.619 -9.279 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 36 117 188 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 118 G C = = MP 42 41 6 46 4 15 35 116 187 -15.187 -15.394 -0.000 -13.808 -13.536 -6.468 -14.847 0.484 -15.347 -11.831 -9.820 -14.659 -11.876 3.813 -3.639 -1.145 -10.131 -12.245 -12.191 -13.597 ML 43 41 6 46 4 14 34 115 186 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 115 186 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 32 113 184 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 35 116 187 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 116 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - + - ML 48 47 6 50 3 13 33 114 185 -16.096 -0.000 -14.750 1.934 -4.141 -3.967 -4.104 D 49 47 6 50 3 11 32 112 184 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 34 115 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 12 32 113 184 -5.314 -0.037 1.973 -11.924 -11.318 -3.780 D 52 50 3 53 2 11 31 112 183 -8.445 -0.004 IL 53 53 3 53 2 12 32 113 184 -6.708 -0.014 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 112 183 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 50 68 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 50 68 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 32 50 -0.000 -14.091 -13.499 -14.139 [ MATP 15 ] 13 35 G C = = MP 58 57 1 62 6 2 3 32 50 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -13.945 -10.519 -16.523 -8.015 -15.551 -1.322 -9.823 -15.864 -11.891 3.955 -12.078 -3.549 -10.194 -12.140 -12.284 -15.768 ML 59 57 1 62 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 34 C G = = MP 64 63 6 68 6 2 3 30 48 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -13.016 -13.298 -12.333 -9.534 -10.684 -12.477 3.950 -3.980 -12.437 -9.506 -12.557 -11.702 -1.294 -12.850 -3.900 -11.239 ML 65 63 6 68 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 33 U A = = MP 70 69 6 74 6 2 3 28 46 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -12.932 -12.913 -12.325 -9.171 -10.764 -12.554 -6.475 -11.630 -12.387 -1.309 -12.549 -10.910 3.943 -12.881 -3.299 -3.337 ML 71 69 6 74 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 32 a u = = MP 76 75 6 80 4 2 2 26 44 -15.187 -15.394 -0.056 -4.719 1.466 2.033 -2.419 2.685 -12.855 -13.893 -4.651 -4.993 -11.465 -2.405 -12.106 -1.460 -0.135 -0.861 -2.589 -1.866 ML 77 75 6 80 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - + - ML 82 81 6 84 3 1 1 24 42 -16.041 -0.164 -3.220 1.399 -2.380 -4.466 0.169 D 83 81 6 84 3 0 0 18 37 -12.807 -8.320 -0.005 IL 84 84 3 84 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - + - ML 85 84 3 87 3 1 1 23 41 -15.877 -0.390 -2.077 1.220 -0.978 -0.903 -0.673 D 86 84 3 87 3 0 0 16 35 -14.694 -10.207 -0.001 IL 87 87 3 87 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - u - + - ML 88 87 3 90 3 1 1 22 41 -15.486 -0.675 -1.421 0.214 0.242 -5.188 0.705 D 89 87 3 90 3 0 0 14 33 -15.980 -11.493 -0.001 IL 90 90 3 90 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - a - + - ML 91 90 3 93 3 1 1 22 40 -1.139 -0.914 -6.036 0.796 0.145 -4.115 0.138 D 92 90 3 93 3 0 0 12 29 -16.753 -2.102 -0.383 IL 93 93 3 93 3 1 1 21 40 -1.455 -0.655 -11.728 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - G - + - ML 94 93 3 96 3 1 1 13 30 -15.212 -0.005 -8.110 -3.454 -11.212 1.954 -4.850 D 95 93 3 96 3 0 0 11 28 -16.391 -3.746 -0.112 IL 96 96 3 96 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - G - + - ML 97 96 3 99 3 1 1 12 29 -15.295 -0.378 -2.117 -1.661 -3.991 1.828 -3.824 D 98 96 3 99 3 0 0 9 27 -16.286 -8.003 -0.006 IL 99 99 3 99 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - a - + - ML 100 99 3 102 3 1 1 11 20 -0.279 -2.509 -13.576 0.838 -1.036 0.456 -1.500 D 101 99 3 102 3 0 0 9 19 -1.790 -0.494 -11.063 IL 102 102 3 102 3 1 1 10 19 -2.782 -0.227 -12.793 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - a - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.966 -0.335 -1.860 -0.031 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.096 -0.000 -14.750 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - G - + - ML 109 108 2 111 5 1 1 26 45 -6.798 -0.013 -14.845 -15.057 -15.949 0.942 -4.317 1.020 -10.706 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.248 -0.060 -6.926 -8.759 -8.032 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 55 U A = = MP 112 111 3 116 6 2 2 25 44 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -3.227 -4.522 -4.025 -0.674 -5.212 -11.120 2.111 -6.198 -3.136 -5.579 -10.652 -7.555 3.393 -5.603 -3.169 -5.269 ML 113 111 3 116 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 54 U A = = MP 118 117 6 122 6 2 2 23 42 -6.826 -15.903 -0.013 -14.680 -14.959 -15.354 -13.016 -13.298 -12.333 -9.534 -10.684 -12.477 0.343 -11.599 -12.437 -9.506 -12.557 -11.702 3.845 -12.850 -1.755 -4.009 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 22 41 -6.040 -6.303 -0.055 -7.958 -8.734 -8.395 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 53 A U = = MP 124 123 6 128 6 2 2 21 40 -15.964 -15.903 -0.001 -11.274 -14.959 -15.354 -12.006 -4.447 -12.201 3.899 -14.342 -15.497 -9.800 -12.244 -11.761 0.038 -12.431 -7.952 -9.725 -13.506 -11.631 -10.799 ML 125 123 6 128 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 42 52 G C = = MP 130 129 6 134 6 2 2 19 38 -15.963 -15.903 -0.000 -14.679 -14.959 -15.354 -12.730 -10.585 -13.223 2.094 -14.863 -12.485 -9.812 -13.217 -11.829 3.528 -12.231 -2.405 -9.956 -12.623 -11.942 -11.850 ML 131 129 6 134 6 1 1 23 42 -6.895 -7.241 -0.694 -1.650 -7.091 -4.620 -0.108 -1.023 0.886 -0.449 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 43 51 C G = = MP 136 135 6 140 4 2 2 17 35 -15.187 -15.394 -0.000 -13.808 -13.016 -13.298 -12.333 -1.833 -3.929 -12.477 3.938 -4.047 -12.437 -9.506 -12.557 -11.702 -2.435 -12.850 -3.766 -11.239 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.096 -0.000 -14.750 -10.165 1.986 -5.309 -6.181 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.096 -0.000 -14.750 -12.602 -4.613 -13.736 1.985 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.096 -0.000 -14.750 -13.381 -12.001 -14.958 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - U - * - ML 151 150 3 153 3 1 1 11 29 -16.096 -0.000 -14.750 -13.381 -12.001 -14.958 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - U - * - ML 154 153 3 156 3 1 1 9 28 -16.096 -0.000 -14.750 -13.381 -12.001 -14.958 2.000 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.096 -0.000 -14.750 1.991 -11.995 -5.432 -11.358 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 2.000 -12.035 -11.281 -11.368 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 79 150 -16.096 -0.000 -14.750 IL 165 165 2 165 3 1 4 80 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 56 - A - + - ML 166 165 2 168 3 1 3 79 150 -16.096 -0.000 -14.750 1.919 -2.803 -4.564 -4.977 D 167 165 2 168 3 0 2 77 148 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 79 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 57 - G - + - ML 169 168 3 171 2 1 2 78 149 -16.752 -0.000 -0.089 -4.339 1.563 -4.150 D 170 168 3 171 2 0 1 77 148 -8.445 -0.004 IL 171 171 3 171 2 1 3 78 149 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 77 148 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.787 -14.091 -13.499 -0.007 [ MATP 48 ] 58 75 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 59 74 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 60 73 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 61 72 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 62 71 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 63 70 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 64 69 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.400 -15.081 -4.798 -0.053 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 65 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.361 -0.002 -10.015 1.992 -7.486 -6.789 -6.941 D 217 215 6 218 3 0 0 8 27 -17.460 -7.263 -0.009 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 66 - U - + - ML 219 218 3 221 3 1 1 12 31 -11.580 -0.221 -2.821 -5.301 -0.803 -6.049 1.760 D 220 218 3 221 3 0 0 7 25 -17.451 -12.964 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 67 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.361 -0.002 -10.015 -7.172 -6.480 -8.122 1.992 D 223 221 3 224 3 0 0 5 24 -17.460 -12.973 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 68 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -6.031 -7.778 1.990 -6.788 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 75 146 -16.096 -0.002 -9.846 IL 230 230 2 230 3 1 1 77 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 76 - A - + - ML 231 230 2 233 3 1 3 75 146 -0.190 -3.022 -14.749 1.704 -4.727 -3.728 -0.668 D 232 230 2 233 3 0 0 74 145 -0.444 -3.584 -2.463 IL 233 233 3 233 3 1 3 74 145 -5.848 -0.025 -13.327 0.000 0.000 0.000 0.000 [ MATL 62 ] 79 - U - + - ML 234 233 3 236 5 1 3 73 144 -15.030 -0.000 -14.845 -15.057 -15.949 0.409 -1.771 -3.463 1.195 D 235 233 3 236 5 0 0 71 143 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 73 144 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 80 117 G C = = MP 237 236 3 241 6 2 3 72 143 -15.964 -6.499 -0.016 -14.680 -14.959 -15.354 -13.769 -10.525 -15.619 -0.442 -15.466 -11.730 -9.822 -15.261 -11.885 3.931 -12.093 -8.433 -10.169 -12.181 -12.246 -14.511 ML 238 236 3 241 6 1 1 73 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 70 141 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 68 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 72 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 71 142 -5.516 -0.050 -9.027 -7.195 -8.301 0.000 0.000 0.000 0.000 [ MATP 64 ] 81 115 G C = = MP 243 242 6 247 6 2 3 70 141 -15.964 -15.903 -0.006 -8.047 -14.959 -15.354 -11.971 -1.701 -12.150 2.362 -14.175 -14.620 -9.555 -12.230 -11.726 3.273 -12.362 -2.150 -9.540 -1.675 -11.426 -1.553 ML 244 242 6 247 6 1 1 73 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 68 139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 66 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 70 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 69 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 82 114 g c = = MP 249 248 6 253 6 2 2 68 139 -6.467 -15.898 -0.022 -14.674 -14.954 -8.011 -9.934 -4.396 -9.754 0.074 -4.085 -10.353 -3.144 -10.425 -3.261 2.880 -10.435 -2.973 2.767 -9.612 -1.675 -6.296 ML 250 248 6 253 6 1 1 75 146 -9.008 -9.354 -4.069 -0.111 -9.204 -6.734 1.889 -3.622 -3.141 -3.291 MR 251 248 6 253 6 1 1 65 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 64 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 73 144 -6.365 -6.628 -1.072 -1.006 -9.059 -8.720 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 67 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 84 113 G C = = MP 255 254 6 259 6 2 2 66 137 -6.298 -15.883 -0.308 -3.767 -4.602 -3.943 -9.924 -1.306 -6.088 2.157 -10.874 -10.340 -1.648 -10.431 -10.179 3.397 -10.426 -4.058 -2.592 -9.598 -4.798 -8.707 ML 256 254 6 259 6 1 1 74 145 -10.251 -10.597 -5.311 -0.046 -10.447 -7.976 1.967 -5.370 -4.805 -5.060 MR 257 254 6 259 6 1 1 60 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 54 125 -12.141 -10.840 -6.637 -7.319 -7.336 -0.034 IL 259 259 5 259 6 1 1 60 131 -6.509 -6.772 -0.039 -8.428 -9.204 -8.864 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 62 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 86 112 g c = = MP 261 260 6 265 4 2 2 59 130 -5.878 -15.087 -0.070 -5.036 -1.794 2.472 -5.343 0.726 -1.039 0.192 -3.538 -6.790 -9.886 2.658 -10.132 -2.351 -3.947 -3.295 -3.845 -6.207 ML 262 260 6 265 4 1 1 73 144 -0.257 -10.514 -2.939 -4.970 1.756 -0.756 -6.317 -5.812 MR 263 260 6 265 4 1 1 45 116 -10.801 -3.872 -1.120 -1.086 -3.217 0.840 -5.005 1.051 D 264 260 6 265 4 0 0 42 113 -11.541 -11.222 -0.864 -1.152 IL 265 265 5 265 4 1 1 73 144 -0.374 -2.677 -3.802 -13.782 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 41 78 -0.710 -1.366 -10.823 0.000 0.000 0.000 0.000 [ MATL 68 ] 93 - C - + - ML 267 266 6 269 3 1 1 29 58 -3.717 -0.119 -8.306 -1.707 1.201 -3.737 0.399 D 268 266 6 269 3 0 0 27 56 -13.820 -0.902 -1.105 IL 269 269 3 269 3 1 1 30 59 -1.322 -0.807 -5.138 0.000 0.000 0.000 0.000 [ MATL 69 ] 97 - U - + - ML 270 269 3 272 3 1 1 28 57 -16.035 -0.005 -8.328 -0.366 -0.250 -2.792 1.163 D 271 269 3 272 3 0 0 26 55 -12.948 -1.072 -0.931 IL 272 272 3 272 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 98 - C - + - ML 273 272 3 275 3 1 1 27 56 -16.060 -0.005 -8.139 -0.287 1.355 -3.596 -0.889 D 274 272 3 275 3 0 0 26 55 -12.204 -0.136 -3.482 IL 275 275 3 275 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 99 - C - + - ML 276 275 3 278 3 1 1 26 55 -4.363 -0.099 -5.808 0.240 1.099 -2.135 -1.157 D 277 275 3 278 3 0 0 22 49 -10.086 -1.065 -0.941 IL 278 278 3 278 3 1 1 29 58 -0.924 -1.082 -10.227 0.000 0.000 0.000 0.000 [ MATL 72 ] 103 - C - + - ML 279 278 3 281 3 1 1 23 50 -16.066 -0.070 -4.395 0.102 1.250 -3.262 -1.169 D 280 278 3 281 3 0 0 19 47 -11.932 -2.231 -0.346 IL 281 281 3 281 3 1 1 24 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 104 - A - + - ML 282 281 3 284 3 1 1 22 49 -4.729 -0.244 -3.083 1.257 -0.442 -0.908 -1.552 D 283 281 3 284 3 0 0 12 39 -13.528 -1.724 -0.520 IL 284 284 3 284 3 1 1 25 53 -0.970 -1.034 -9.736 0.000 0.000 0.000 0.000 [ MATL 74 ] 108 - A - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 1.190 0.137 -3.600 -0.898 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Lys LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:56 2015 COM [1] cmbuild --hand --enone Lys-final-vert.cm ../Lys-2nd-align.sto NSEQ 1062 EFFN 7.296227 CKSUM 2088274238 STATS LOCAL MSV -8.7455 0.71864 STATS LOCAL VITERBI -9.6662 0.71864 STATS LOCAL FORWARD -3.9079 0.71864 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27125 1.44393 1.44968 1.39080 1.38629 1.38629 1.38629 1.38629 0.02046 4.62826 4.55782 1.46634 0.26236 0.00000 * 1 4.02569 0.08450 4.05485 3.08268 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01975 4.62754 4.62754 1.46634 0.26236 1.05221 0.42950 2 0.53412 2.72106 1.31693 2.52509 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 3 2.70010 0.67999 2.50529 1.06558 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 4 2.78203 1.92800 2.63932 0.32679 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.04256 3.44537 4.62826 0.52967 0.88867 1.09861 0.40547 5 0.75774 2.48594 1.05839 2.29250 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 6 0.96311 1.88074 1.35799 1.56715 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.03353 3.76354 4.62826 0.69963 0.68671 1.09861 0.40547 7 2.19224 3.50050 0.19443 3.35666 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 8 0.13103 3.28067 3.15711 3.15459 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 9 0.06251 4.14447 3.97107 3.65376 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.04009 3.52251 4.62826 0.56698 0.83756 1.09861 0.40547 10 3.47685 3.71784 0.07039 4.36002 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 11 4.24544 0.10652 4.10831 2.65535 14 C = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 12 4.39513 3.25436 3.86801 0.07455 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 13 0.92113 1.75574 1.71750 1.38774 16 a = - < 1.38629 1.38629 1.38629 1.38629 0.05059 4.62826 3.22992 1.46634 0.26236 1.09861 0.40547 14 0.61392 2.21608 2.50034 1.31795 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.10962 4.59801 2.36706 1.46634 0.26236 1.79980 0.18072 15 0.77766 1.85315 1.84453 1.48865 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.22574 4.51062 1.65506 1.46634 0.26236 2.66426 0.07220 16 1.27217 1.35258 2.32745 1.01153 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.34373 4.31206 1.28204 1.46634 0.26236 3.42561 0.03307 17 1.05484 1.45208 2.12847 1.20848 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.38390 1.23282 3.59971 0.51888 0.90433 1.43184 0.27295 18 2.78679 3.82187 0.12664 3.33989 25 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03348 4.18120 4.03720 1.46634 0.26236 2.36627 0.09853 19 2.01402 2.93921 0.30208 2.59884 26 G + - _ 1.38629 1.38629 1.38629 1.38629 0.13678 4.21998 2.17911 1.46634 0.26236 1.30147 0.31764 20 1.00457 1.84873 1.33692 1.54315 27 a + - _ 1.38629 1.38629 1.38629 1.38629 0.67203 0.74415 4.25542 0.16840 1.86444 0.05910 2.85788 21 0.90627 1.62270 2.07994 1.29583 31 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 22 1.43619 1.47681 1.51851 1.15593 32 u = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 23 0.08790 3.98866 3.04370 4.01920 33 A = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 24 2.90379 4.23874 0.09402 3.88769 34 G = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 25 4.42808 0.07477 4.23604 3.08698 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 26 0.79265 3.06023 0.81227 2.87122 36 a + - , 1.38629 1.38629 1.38629 1.38629 0.02695 4.08510 4.62826 0.92168 0.50725 1.09861 0.40547 27 2.08819 1.21848 2.05338 0.79383 38 u = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 28 3.69727 1.79544 3.50708 0.24952 39 U = - < 1.38629 1.38629 1.38629 1.38629 0.02686 4.09065 4.62826 0.92604 0.50438 1.09861 0.40547 29 0.16841 4.30883 2.09616 3.98369 41 A = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 30 1.50366 3.44963 0.34466 3.28429 42 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 31 3.57391 0.12945 3.77523 2.65291 43 C = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 32 3.95736 0.07008 4.14576 3.41936 44 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 33 3.67127 3.28498 4.19680 0.08113 45 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 34 3.99402 3.76174 4.54321 0.05373 46 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 35 3.99402 3.76174 4.54321 0.05373 47 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 36 3.99402 3.76174 4.54321 0.05373 48 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 37 0.04495 4.48886 3.93731 4.32602 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 38 0.03520 4.66493 4.28950 4.46959 50 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 39 2.89352 3.93564 0.11623 3.35772 51 G = - > 1.38629 1.38629 1.38629 1.38629 0.02003 4.62826 4.59911 1.46634 0.26236 1.09861 0.40547 40 3.52226 0.38992 3.26143 1.36641 52 C = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62797 4.62797 1.46634 0.26236 1.07927 0.41528 41 4.16661 2.30367 4.08174 0.14188 53 U = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 42 0.29867 3.66755 1.61890 3.36574 54 A = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 43 0.87847 2.23803 1.09708 1.93746 55 a = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 44 0.14567 2.97266 3.19689 3.13489 56 A + - , 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 45 1.46153 3.01330 0.42885 2.69218 57 G + - , 1.38629 1.38629 1.38629 1.38629 1.63252 4.62826 0.22967 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 47 1.80297 1.30594 1.07730 1.49718 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 48 1.80059 1.30667 1.07819 1.49670 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 49 1.79953 1.30700 1.07859 1.49648 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 50 1.79910 1.30713 1.07874 1.49640 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 51 1.79900 1.30716 1.07878 1.49638 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 52 1.79904 1.30715 1.07877 1.49639 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.06688 0.04769 53 0.71876 1.96143 1.78167 1.59145 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.08380 3.21409 3.21409 1.46634 0.26236 3.98571 0.01875 54 1.45920 1.56545 1.91793 0.88753 66 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10349 3.23378 2.83180 1.46634 0.26236 4.38153 0.01259 55 1.45461 1.69869 1.87779 0.84244 67 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08380 3.21409 3.21409 1.46634 0.26236 4.38770 0.01251 56 1.36109 1.97566 0.91133 1.59474 68 g + - _ 1.38629 1.38629 1.38629 1.38629 0.21836 3.21409 1.85810 1.46634 0.26236 4.38770 0.01251 57 1.73030 1.22019 1.16209 1.53823 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 58 1.73022 1.22022 1.16212 1.53820 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 59 1.73022 1.22022 1.16212 1.53820 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 60 1.73038 1.22016 1.16206 1.53825 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 61 1.73080 1.21997 1.16190 1.53837 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 62 1.73172 1.21958 1.16157 1.53864 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 63 1.73350 1.21882 1.16092 1.53917 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02429 3.72973 64 0.34532 2.73852 2.72072 1.82316 76 A + - , 1.38629 1.38629 1.38629 1.38629 1.23227 0.35868 4.62826 0.04406 3.14405 1.09861 0.40547 65 1.19675 2.02317 2.38127 0.74833 79 u + - , 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 66 2.82377 4.35642 0.09007 4.27420 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 67 1.33909 2.69633 0.55186 2.35826 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 68 1.93782 1.95558 0.91900 1.15334 82 g = - < 1.38629 1.38629 1.38629 1.38629 0.03197 3.98128 4.35792 0.84360 0.56240 1.09861 0.40547 69 1.38538 2.61098 0.51913 2.51000 84 G = - < 1.38629 1.38629 1.38629 1.38629 0.11940 3.92560 2.37712 0.80645 0.59139 1.19707 0.35965 70 1.21342 1.71161 1.11608 1.63637 86 g = - < 1.38629 1.38629 1.38629 1.38629 0.12386 2.49487 3.38159 1.48054 0.25814 0.71247 0.67419 71 1.95984 0.76072 2.72124 1.12087 93 c + - _ 1.38629 1.38629 1.38629 1.38629 0.08253 2.71193 4.35746 0.67509 0.71154 0.75515 0.63477 72 1.48128 1.54808 2.32417 0.77190 97 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.59750 4.38477 1.46634 0.26236 0.95784 0.48406 73 1.54008 0.69266 2.65926 1.53529 98 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02294 4.60856 4.36524 1.46634 0.26236 0.56642 0.83830 74 1.25459 0.91059 2.26460 1.56711 99 c + - _ 1.38629 1.38629 1.38629 1.38629 0.07449 3.03712 3.73783 0.88370 0.53316 1.04068 0.43574 75 1.34879 0.78313 2.53809 1.58740 103 c + - _ 1.38629 1.38629 1.38629 1.38629 0.05875 4.61202 3.05499 1.46634 0.26236 1.23780 0.34252 76 0.72752 1.71622 1.87037 1.69781 104 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14838 3.23142 2.31874 0.89719 0.52377 1.15799 0.37705 77 0.76905 1.45883 2.35891 1.56296 108 a + - _ 1.38629 1.38629 1.38629 1.38629 0.13159 2.87799 2.70231 0.81159 0.58726 0.38239 1.14642 78 1.78882 0.88778 1.66077 1.46411 112 c = - > 1.38629 1.38629 1.38629 1.38629 0.02139 4.54848 4.54848 1.46634 0.26236 0.33639 1.25297 79 2.77361 0.56487 2.42378 1.27103 113 C = - > 1.38629 1.38629 1.38629 1.38629 0.01995 4.61747 4.61747 1.46634 0.26236 0.82524 0.57649 80 1.26698 1.00042 1.74938 1.73324 114 c = - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62529 4.62529 1.46634 0.26236 0.93029 0.50160 81 2.80670 0.59931 2.50163 1.17619 115 C = - > 1.38629 1.38629 1.38629 1.38629 0.02868 3.99009 4.62826 0.84997 0.55761 1.09861 0.40547 82 4.39429 0.10606 4.19580 2.61429 117 C = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 83 3.58417 0.24108 3.25544 1.91121 118 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 84 1.78146 1.34514 1.68026 0.95508 119 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02760 4.04858 4.62826 0.89345 0.52634 1.09861 0.40547 85 2.53318 1.15586 2.26961 0.68825 121 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 86 0.35832 2.76557 1.83725 2.53888 122 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 87 1.18036 2.68500 0.61266 2.49251 123 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 88 2.81586 1.50963 2.64793 0.43331 124 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 89 3.34618 4.21469 0.07273 3.90426 125 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02046 4.62826 4.55782 1.46634 0.26236 1.09861 0.40547 90 0.30788 3.01625 1.87736 2.76434 126 A + - : 1.38629 1.38629 1.38629 1.38629 0.00992 4.61772 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Met STATES 289 NODES 76 CLEN 90 W 110 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Met-final-vert.cm ../Met-2nd-align.sto COM [2] cmcalibrate --seed 208 Met-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1094 EFFN 1094.000000 CKSUM 278576376 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.5042 0.71865 ECMLC 0.69163 -6.43250 2.40402 1600000 541261 0.002217 ECMGC 0.31201 -48.07776 -32.99691 1600000 44216 0.009046 ECMLI 0.68561 -5.99506 2.81063 1600000 502506 0.002388 ECMGI 0.31666 -44.45879 -29.69338 1600000 42921 0.009319 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 110 161 -15.024 -16.269 -0.000 -12.723 IL 1 1 2 1 4 19 40 111 163 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 41 112 163 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 103 - A - + MR 3 2 3 5 5 25 47 110 162 -15.072 -0.010 -7.196 -15.100 -15.992 1.935 -10.880 -3.039 -4.191 D 4 2 3 5 5 16 36 108 160 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 19 40 110 162 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 102 A U = = MP 6 5 3 10 6 26 47 109 161 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -1.399 -3.097 -12.233 3.750 -2.081 -15.524 -9.830 -12.276 -11.794 0.488 -12.464 -3.052 -1.804 -13.537 -11.661 -10.832 ML 7 5 3 10 6 20 41 106 158 -9.801 -10.147 -4.861 -0.063 -9.997 -7.526 1.950 -4.766 -4.223 -4.483 MR 8 5 3 10 6 18 38 107 158 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 34 103 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 39 109 160 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 39 108 160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 101 G C = = MP 12 11 6 16 6 26 45 107 159 -15.997 -15.936 -0.101 -3.888 -14.992 -15.387 -9.972 -6.388 -9.790 0.140 -0.859 -10.384 -1.340 -10.480 -10.227 3.655 -10.473 -1.493 -0.166 -3.627 -7.995 -8.756 ML 13 11 6 16 6 20 41 105 157 -9.801 -10.147 -4.861 -0.063 -9.997 -7.526 -3.837 -5.313 1.950 -4.573 MR 14 11 6 16 6 18 37 105 156 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 33 102 153 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 39 107 158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 39 106 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 100 U A = = MP 18 17 6 22 6 25 43 105 157 -15.896 -15.835 -0.000 -14.612 -14.891 -15.286 -12.869 -1.933 -12.221 -9.302 -3.711 -3.126 0.288 -11.496 -12.314 -1.990 -12.450 -11.413 3.599 -4.094 0.925 -11.112 ML 19 17 6 22 6 22 41 104 155 -13.134 -13.480 -0.145 -3.396 -13.330 -10.860 -7.220 1.860 -7.722 -1.481 MR 20 17 6 22 6 18 37 103 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 33 100 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 38 105 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 38 104 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 99 A U = = MP 24 23 6 28 6 24 41 103 155 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -11.976 -1.295 -12.073 3.675 0.365 -4.547 -8.656 -6.227 -11.764 0.152 -12.357 -6.228 -3.930 -4.495 -2.097 -10.738 ML 25 23 6 28 6 19 38 101 153 -9.801 -10.147 -4.861 -0.063 -9.997 -7.526 1.950 -4.766 -4.223 -4.483 MR 26 23 6 28 6 17 36 101 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 33 98 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 38 103 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 38 102 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 98 a u = = MP 30 29 6 34 6 22 39 101 153 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 0.097 0.596 0.659 2.748 -10.917 -6.050 -5.984 -2.528 -10.224 1.705 -5.521 -3.760 0.385 -4.795 -7.992 -2.216 ML 31 29 6 34 6 19 38 100 152 -9.801 -10.147 -0.075 -4.556 -9.997 -7.526 1.950 -4.766 -4.223 -4.483 MR 32 29 6 34 6 17 35 99 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 32 96 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 37 101 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 100 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 97 g c = = MP 36 35 6 40 6 20 37 99 151 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -9.975 -1.077 -5.260 2.664 -2.761 -4.943 -3.245 -10.484 -10.232 2.696 -10.478 1.185 -3.416 -5.487 -7.998 -8.759 ML 37 35 6 40 6 17 35 98 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 34 98 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 32 95 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 36 99 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 99 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 96 G C = = MP 42 41 6 46 4 18 35 97 149 -15.229 -15.436 -0.000 -13.851 -13.442 -4.353 -14.537 1.063 -15.315 -11.945 -9.862 -14.405 -11.912 3.781 -12.172 -3.102 -10.149 -12.333 -12.198 -13.247 ML 43 41 6 46 4 16 34 97 148 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 15 33 96 147 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 32 95 146 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 34 98 149 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 34 97 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 16 33 95 147 -16.139 -0.000 -14.793 -9.128 -3.509 -4.952 1.955 D 49 47 6 50 3 14 31 94 145 -6.174 -1.687 -0.566 IL 50 50 3 50 3 16 33 96 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - C - + - ML 51 50 3 53 2 15 32 94 146 -16.794 -0.000 -0.227 1.653 -12.378 -10.762 D 52 50 3 53 2 14 31 93 145 -8.445 -0.004 IL 53 53 3 53 2 15 32 95 146 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 14 31 93 145 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 41 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 41 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 22 41 -0.000 -14.134 -13.541 -14.181 [ MATP 15 ] 10 27 A U = = MP 58 57 1 62 6 2 3 22 41 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -5.330 -10.699 -3.533 3.754 -14.340 -4.717 -9.789 -2.220 -11.798 0.663 -12.464 -4.157 -0.993 -13.504 -11.626 -10.832 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 G C = = MP 64 63 6 68 6 2 3 20 39 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.898 -10.610 -15.677 -8.077 -14.540 -11.748 0.651 -15.053 -11.950 3.850 -12.139 -8.546 -9.944 -12.213 -11.713 -14.703 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 C G = = MP 70 69 6 74 6 2 3 18 37 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.059 -13.341 -12.376 -9.577 -10.726 -12.520 3.815 -11.642 -12.480 -9.549 -3.611 -11.745 0.663 -12.893 -1.981 -11.281 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 3 16 35 -15.229 -15.436 -0.000 -13.851 -13.059 -13.340 -1.744 -9.577 -4.054 -12.520 -2.022 -11.642 -12.480 -9.549 -12.600 -11.744 3.944 -12.893 -8.429 -11.281 ML 77 75 6 80 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 14 32 -16.139 -0.000 -14.793 1.868 -6.024 -6.080 -1.643 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 13 31 -16.139 -1.037 -0.964 1.947 -3.013 -5.690 -10.474 D 86 84 3 87 3 0 0 17 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 12 30 -15.102 -0.409 -2.018 -1.071 0.194 -8.472 1.249 D 89 87 3 90 3 0 0 11 29 -16.595 -12.108 -0.000 IL 90 90 3 90 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 11 29 -4.848 -7.371 -0.060 -0.795 -0.770 -8.167 1.503 D 92 90 3 93 3 0 0 11 29 -16.899 -0.220 -2.824 IL 93 93 3 93 3 1 1 12 30 -4.696 -0.066 -7.396 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 2 11 29 -15.299 -0.000 -13.953 1.784 -9.050 -1.516 -2.284 D 95 93 3 96 3 0 0 9 28 -16.379 -1.424 -0.673 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - U - + - ML 97 96 3 99 3 1 1 9 28 -15.672 -1.654 -0.552 -0.618 -0.808 -1.622 1.294 D 98 96 3 99 3 0 0 8 27 -15.706 -11.219 -0.001 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 5 9 -1.182 -0.839 -12.672 -8.766 -1.299 -9.567 1.844 D 101 99 3 102 3 0 0 2 6 -17.182 -0.000 -11.573 IL 102 102 3 102 3 1 1 5 8 -7.549 -0.009 -10.249 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.991 -12.028 -11.334 -5.309 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.139 -0.000 -14.793 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - u - + - ML 109 108 2 111 5 1 1 26 45 -5.328 -0.036 -14.888 -15.100 -15.992 0.276 -0.835 -1.349 0.877 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 44 -6.625 -0.023 -8.304 -10.136 -9.410 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 47 U A = = MP 112 111 3 116 6 2 2 25 43 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.059 -13.341 -12.376 -9.577 -4.645 -12.520 -0.321 -11.642 -12.480 -9.549 -12.600 -11.745 3.792 -12.893 0.282 -3.462 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 46 C G = = MP 118 117 6 122 6 2 2 23 41 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.050 -13.328 -0.612 -9.560 -4.589 -12.518 3.021 -6.295 -12.474 -9.528 -12.596 -11.721 2.582 -3.872 -0.030 -2.906 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 45 G C = = MP 124 123 6 128 6 2 2 21 39 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.645 -6.525 -15.083 -0.621 -15.425 -11.842 -9.864 -14.859 -11.921 3.878 -12.151 -0.655 -10.185 -12.268 -12.250 -13.861 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 44 G C = = MP 130 129 6 134 6 2 2 19 37 -16.006 -15.946 -0.000 -14.722 -15.002 -15.397 -13.940 -10.563 -16.273 -8.040 -15.571 -11.726 -9.866 -15.725 -11.932 3.968 -12.124 -1.527 -10.230 -12.193 -12.317 -15.369 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 43 G C = = MP 136 135 6 140 4 2 2 17 35 -15.229 -15.436 -0.000 -13.851 -13.960 -10.564 -16.371 -8.049 -15.528 -11.719 0.348 -15.773 -11.934 3.862 -12.123 -3.210 -10.222 -3.792 -12.294 -15.520 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 142 141 6 144 3 1 1 14 32 -16.139 -0.000 -14.793 -11.650 1.916 -12.132 -2.146 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - + - ML 145 144 3 147 3 1 1 13 31 -16.139 -0.000 -14.793 -11.928 1.833 -12.492 -1.195 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - * - ML 148 147 3 150 3 1 1 11 30 -16.139 -0.000 -14.793 -11.764 1.879 -12.277 -1.644 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.139 -0.000 -14.793 2.000 -12.077 -11.323 -11.410 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 8 27 -16.139 -0.000 -14.793 -13.425 -12.044 -15.003 2.000 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.220 -0.020 -14.793 1.932 -11.688 -2.445 -11.258 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 6 12 -4.762 -0.063 -7.462 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -6.035 1.851 -1.653 -4.070 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 7 62 113 -16.139 -0.000 -14.793 IL 165 165 2 165 3 1 7 63 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 7 62 113 -16.139 -0.000 -14.793 1.750 -1.323 -2.625 -3.732 D 167 165 2 168 3 0 5 60 111 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 62 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 6 61 112 -16.794 -0.000 1.258 0.336 -3.493 -1.960 D 170 168 3 171 2 0 5 60 111 -8.445 -0.004 IL 171 171 3 171 2 1 6 61 112 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 5 60 111 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.830 -14.134 -13.541 -0.007 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.021 -18.719 -14.516 -15.198 -15.216 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.443 -15.124 -13.140 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.556 -13.069 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.556 -13.069 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.556 -13.069 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 5 56 107 -16.139 -0.000 -14.793 IL 230 230 2 230 3 1 1 58 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - A - + - ML 231 230 2 233 3 1 5 56 107 -3.676 -0.118 -14.793 1.991 -12.035 -5.323 -11.399 D 232 230 2 233 3 0 0 54 105 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 3 56 107 -7.183 -0.011 -9.883 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - U - + - ML 234 233 3 236 5 1 4 55 106 -15.072 -0.018 -14.888 -6.317 -15.992 -5.729 -2.038 -9.873 1.902 D 235 233 3 236 5 0 0 53 104 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 55 106 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 95 G C = = MP 237 236 3 241 6 2 5 54 105 -15.988 -5.586 -0.031 -14.704 -14.984 -15.379 -13.926 -10.545 -16.282 -8.024 -15.555 -11.706 -9.848 -15.724 -11.914 3.981 -12.106 -2.296 -10.213 -12.174 -12.300 -15.389 ML 238 236 3 241 6 1 1 52 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 48 99 -11.172 -9.901 -5.810 -9.879 -0.035 -8.093 -5.309 1.967 -5.801 -4.409 D 240 236 3 241 6 0 0 48 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 53 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 53 104 -6.372 -0.027 -9.883 -8.051 -9.157 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 93 U U = = MP 243 242 6 247 6 2 4 52 103 -15.988 -15.928 -0.000 -14.704 -14.984 -15.379 -11.371 -11.005 -11.203 1.667 -4.605 -11.815 -0.860 -10.721 -11.161 0.775 -11.554 -6.598 -1.021 -2.473 -0.060 3.150 ML 244 242 6 247 6 1 1 50 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 46 98 -11.172 -9.901 -5.810 -9.879 -0.035 -8.093 -5.309 1.967 -5.801 -4.409 D 246 242 6 247 6 0 0 46 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 51 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 51 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 92 u u = = MP 249 248 6 253 6 2 2 50 101 -15.988 -5.383 -0.063 -14.704 -14.984 -5.767 -5.992 -0.820 -9.488 0.341 -3.926 0.281 -1.674 -1.609 -9.781 0.743 -10.140 -3.049 0.383 0.850 -7.493 2.872 ML 250 248 6 253 6 1 1 48 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 45 96 -11.172 -9.901 -5.810 -9.879 -5.013 -0.076 -4.929 -4.495 -5.751 1.965 D 252 248 6 253 6 0 0 45 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 49 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 2 49 100 -6.563 -0.024 -10.074 -8.242 -9.347 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 90 G C = = MP 255 254 6 259 6 2 2 48 99 -15.962 -15.901 -0.062 -14.677 -5.356 -5.824 -1.187 -4.252 -14.066 0.289 -15.160 -12.022 -9.816 -13.988 -11.857 3.836 -12.152 -8.321 -10.067 -12.363 -12.099 -12.739 ML 256 254 6 259 6 1 1 46 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 46 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 44 95 -15.021 -13.719 -9.516 -3.572 -0.364 -2.861 IL 259 259 5 259 6 1 1 47 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 47 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 89 G C = = MP 261 260 6 265 4 2 2 46 97 -15.122 -15.329 -0.120 -3.651 -13.153 -2.927 -14.020 0.472 -3.444 -11.949 -9.723 -13.938 -11.796 3.834 -12.087 -8.263 -9.988 -12.292 -2.980 -12.699 ML 262 260 6 265 4 1 1 45 96 -5.778 -5.961 -0.109 -4.690 -2.509 1.779 -3.337 -1.772 MR 263 260 6 265 4 1 1 44 95 -11.073 -10.102 -7.970 -0.008 -7.288 1.992 -7.755 -6.326 D 264 260 6 265 4 0 0 43 95 -9.912 -9.593 -1.297 -0.760 IL 265 265 5 265 4 1 1 46 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 46 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 1 44 95 -6.051 -0.022 -14.585 -3.738 -3.210 -5.879 1.926 D 268 266 6 269 3 0 0 43 94 -14.664 -0.216 -2.844 IL 269 269 3 269 3 1 1 44 95 -4.728 -0.064 -7.428 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 43 94 -16.112 -0.003 -8.891 -1.497 -3.855 -2.800 1.779 D 271 269 3 272 3 0 0 42 93 -11.830 -0.235 -2.735 IL 272 272 3 272 3 1 1 44 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - A - + - ML 273 272 3 275 3 1 1 42 93 -16.132 -0.000 -14.786 1.346 -1.186 -4.328 -0.047 D 274 272 3 275 3 0 0 41 92 -9.910 -0.077 -4.302 IL 275 275 3 275 3 1 1 43 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 41 92 -4.255 -0.093 -6.657 1.784 -3.697 -2.769 -1.588 D 277 275 3 278 3 0 0 36 88 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 48 99 -0.519 -1.729 -11.029 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.125 -0.020 -6.152 1.605 -1.743 -9.417 -0.603 D 280 278 3 281 3 0 0 11 29 -10.949 -6.462 -0.017 IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - A - + - ML 282 281 3 284 3 1 1 6 12 -6.108 -0.226 -2.935 1.182 0.036 -1.627 -1.389 D 283 281 3 284 3 0 0 4 9 -12.185 -7.698 -0.007 IL 284 284 3 284 3 1 1 6 12 -4.832 -0.060 -7.532 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.957 0.374 -9.650 1.417 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Met LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Met-final-vert.cm ../Met-2nd-align.sto NSEQ 1094 EFFN 6.956856 CKSUM 278576376 STATS LOCAL MSV -8.9425 0.71865 STATS LOCAL VITERBI -9.5447 0.71865 STATS LOCAL FORWARD -3.6898 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29626 1.33041 1.53128 1.40316 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 0.00000 * 1 0.61925 2.22279 1.48345 2.06760 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 2 1.84923 2.29233 0.46352 2.18439 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 3 2.08579 1.46259 1.96962 0.68390 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 4 0.86531 1.75695 1.49344 1.70423 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 5 1.04609 1.75674 1.44420 1.42648 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 6 1.23306 2.48556 0.63068 2.37415 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 7 2.04375 3.66782 0.20418 3.51977 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 8 3.10614 2.80937 3.46660 0.14646 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 9 1.70402 0.35827 3.44957 2.43719 9 C + - , 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 10 0.61602 2.32811 1.39663 2.16283 10 A = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 11 2.92989 2.51220 0.18295 3.42043 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 12 3.44817 0.29112 3.14832 1.72684 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 13 4.18532 3.16317 4.39744 0.07237 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 14 0.18120 3.19484 3.21953 2.46767 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 15 0.10925 3.22190 3.42399 3.47273 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.53191 4.52164 0.91219 1.46634 0.26236 1.09861 0.40547 16 1.65242 1.38695 2.41666 0.75639 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.20591 4.02607 1.78229 1.46634 0.26236 3.66217 0.02601 17 1.59078 1.68799 2.33434 0.66462 17 U + - _ 1.38629 1.38629 1.38629 1.38629 0.86536 3.22525 0.61738 0.85022 0.55743 0.19139 1.74763 18 0.35622 2.68126 2.13162 2.18430 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03331 4.11177 4.11177 1.46634 0.26236 0.99604 0.46099 19 1.51402 1.73562 2.06903 0.73945 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.70145 4.28478 0.71262 1.46634 0.26236 3.10903 0.04567 20 1.97440 1.81294 2.47825 0.48761 21 U + - _ 1.38629 1.38629 1.38629 1.38629 0.27377 1.54564 3.63741 0.23093 1.57890 0.03572 3.34977 21 0.04734 4.38490 4.09870 4.06414 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 22 0.08104 4.55094 2.93520 4.25724 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 23 1.94080 3.39547 0.24572 3.20032 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 24 3.63884 0.20493 2.44077 2.63226 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 25 2.36848 1.50959 2.17419 0.55918 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 26 1.20683 1.76127 1.95740 0.94726 28 u + - , 1.38629 1.38629 1.38629 1.38629 0.04155 3.51233 4.52163 0.61699 0.77558 1.09861 0.40547 27 3.41884 1.87186 3.20821 0.25750 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 28 2.11585 0.94753 2.08687 1.00050 31 c = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 29 2.68026 4.00458 0.11369 3.87801 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 30 3.40921 4.45457 0.05889 4.38225 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 31 2.57595 2.60394 0.21769 3.08866 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 32 3.76466 0.11937 4.30769 2.57854 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 33 3.44371 0.19084 4.05692 2.08358 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 34 3.60799 0.15051 4.18734 2.32855 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 35 0.03738 4.60490 4.23179 4.40991 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 36 3.93510 3.70867 4.48325 0.05694 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 37 0.10566 3.90129 2.87554 3.74354 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03248 3.85927 4.52163 0.83258 0.57080 1.09861 0.40547 38 3.22161 0.18256 2.83827 2.68167 42 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 39 3.37802 0.24754 2.50649 2.26707 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 40 4.50349 0.08395 4.32801 2.87787 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 41 4.07103 0.15519 3.84419 2.25106 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 42 1.20045 2.24794 0.77368 2.02486 46 g = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 43 0.36040 3.37756 1.49994 3.09387 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 44 0.31014 2.22541 2.58159 2.48915 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 45 0.67846 1.38349 2.47557 1.84652 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.52590 4.52163 0.25915 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 47 1.80299 1.30594 1.07729 1.49718 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 48 1.80062 1.30667 1.07818 1.49670 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 49 1.79956 1.30699 1.07858 1.49649 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 50 1.79914 1.30712 1.07873 1.49641 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 51 1.79904 1.30715 1.07877 1.49638 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 52 1.79908 1.30714 1.07875 1.49639 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 57 1.73034 1.22017 1.16207 1.53824 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 58 1.73026 1.22021 1.16210 1.53821 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 59 1.73025 1.22021 1.16211 1.53821 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 60 1.73040 1.22014 1.16205 1.53826 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 61 1.73083 1.21996 1.16190 1.53838 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 62 1.73174 1.21957 1.16156 1.53865 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.29027 0.01380 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02779 3.59712 64 0.04808 4.42234 3.87311 4.25857 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.08488 2.65209 4.52163 0.28417 1.39691 1.09861 0.40547 65 3.06915 2.48450 3.63228 0.16994 70 U + - , 1.38629 1.38629 1.38629 1.38629 0.03179 4.52163 3.89144 1.46634 0.26236 1.09861 0.40547 66 3.45284 4.51360 0.05570 4.45968 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.02220 4.51204 4.51204 1.46634 0.26236 1.35531 0.29823 67 1.59460 1.73710 1.52705 0.90683 72 u = - < 1.38629 1.38629 1.38629 1.38629 0.02220 4.51204 4.51204 1.46634 0.26236 1.35531 0.29823 68 1.62382 1.56971 1.61951 0.92444 73 u = - < 1.38629 1.38629 1.38629 1.38629 0.03662 4.51204 3.68974 1.46634 0.26236 1.35531 0.29823 69 1.89526 3.05696 0.29067 2.90166 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.05574 4.49794 3.14468 1.46634 0.26236 1.47234 0.26057 70 1.80276 2.65992 0.37936 2.51453 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.08592 4.46757 2.64711 1.46634 0.26236 1.58385 0.22964 71 2.74351 2.63799 3.33685 0.18802 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03593 3.76427 4.41375 0.84179 0.56376 0.30881 1.32546 72 2.15466 2.60136 2.78681 0.29000 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02391 4.50744 4.37429 1.46634 0.26236 0.70850 0.67802 73 0.66414 1.92961 2.44662 1.37242 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02206 4.51811 4.51811 1.46634 0.26236 0.92081 0.50782 74 0.29322 2.71978 2.61260 2.16359 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07169 2.98017 3.99565 1.24716 0.33872 1.09861 0.40547 75 0.44293 2.20040 2.76473 1.69230 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.51408 3.83428 1.46634 0.26236 1.30620 0.31587 76 0.76848 1.51799 2.07037 1.65553 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14174 3.81464 2.20630 0.81401 0.58533 1.54022 0.24122 77 2.47182 1.27332 3.08303 0.52789 88 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03255 4.39907 3.92542 1.46634 0.26236 0.25411 1.49437 78 2.75054 0.43340 2.46556 1.59530 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.04180 4.50342 3.51085 1.46634 0.26236 0.74855 0.64065 79 2.88672 0.33147 2.86083 1.77695 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.04166 3.51750 4.49794 0.63274 0.75744 0.49114 0.94657 80 1.60056 1.46915 1.50173 1.06319 92 u = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 81 1.81978 1.62921 1.47359 0.88491 93 u = - > 1.38629 1.38629 1.38629 1.38629 0.03820 3.62662 4.52163 0.68151 0.70492 1.09861 0.40547 82 4.36363 0.08248 4.27856 2.94552 95 C = - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 83 3.74152 0.23155 3.49773 1.87922 96 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02198 4.52163 4.52163 1.46634 0.26236 1.09861 0.40547 84 2.59173 0.78238 2.34309 0.98950 97 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02729 4.52163 4.13230 1.46634 0.26236 1.09861 0.40547 85 1.55040 1.44766 1.43926 1.15324 98 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02210 4.51645 4.51645 1.46634 0.26236 1.24588 0.33924 86 1.79873 1.57449 1.69376 0.81294 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.07633 4.51645 2.77166 1.46634 0.26236 1.24588 0.33924 87 0.84063 2.05100 1.20932 1.95505 100 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02332 4.46344 4.46344 1.46634 0.26236 0.35943 1.19757 88 2.27892 0.52985 2.25895 1.58741 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02210 4.51645 4.51645 1.46634 0.26236 1.24588 0.33924 89 2.17457 1.60350 2.07855 0.57975 102 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02210 4.51645 4.51645 1.46634 0.26236 0.85655 0.55274 90 0.11527 3.68262 3.02512 3.34769 103 A + - : 1.38629 1.38629 1.38629 1.38629 0.01105 4.51070 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Phe STATES 289 NODES 76 CLEN 90 W 107 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Phe-final-vert.cm ../Phe-2nd-align.sto COM [2] cmcalibrate --seed 208 Phe-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1089 EFFN 1089.000000 CKSUM 1527184349 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7893 0.71878 ECMLC 0.71221 -6.65035 2.02853 1600000 580292 0.002068 ECMGC 0.27408 -43.79615 -27.02360 1600000 39675 0.010082 ECMLI 0.70870 -6.06063 2.50795 1600000 520537 0.002305 ECMGI 0.28920 -38.91388 -23.11002 1600000 38633 0.010354 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 107 140 -15.017 -16.262 -0.000 -12.716 IL 1 1 2 1 4 19 39 108 141 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 40 108 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 125 - A - + MR 3 2 3 5 5 25 46 107 140 -15.066 -0.141 -14.881 -3.429 -15.985 1.988 -6.331 -5.673 -11.175 D 4 2 3 5 5 17 35 105 139 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 19 39 107 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 124 G C = = MP 6 5 3 10 6 24 46 106 139 -15.860 -15.799 -0.000 -14.576 -14.856 -15.251 -13.742 -10.419 -15.856 -2.108 -15.400 -11.597 -9.718 -15.400 -4.682 3.963 -11.982 -5.655 -3.682 -5.031 -12.159 -14.847 ML 7 5 3 10 6 18 37 104 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 22 43 103 137 -13.986 -12.715 -3.029 -12.693 -0.190 -10.907 -8.408 1.996 -8.922 -7.340 D 9 5 3 10 6 15 33 101 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 38 105 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 39 105 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 123 U A = = MP 12 11 6 16 6 23 44 104 137 -15.878 -15.817 -0.002 -14.593 -14.873 -9.948 -12.928 -13.210 -12.246 -3.131 -1.906 -12.390 2.275 -11.512 -12.350 -9.417 -12.470 -11.613 3.395 -12.763 -1.980 -11.151 ML 13 11 6 16 6 18 37 102 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 22 42 102 135 -13.801 -12.530 -8.439 -12.508 -0.006 -10.722 1.996 -8.641 -7.890 -8.013 D 15 11 6 16 6 15 33 99 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 38 103 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 38 103 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 122 U A = = MP 18 17 6 22 6 24 42 102 135 -15.876 -5.943 -0.025 -14.592 -9.912 -15.267 -1.423 -5.326 -5.643 -3.285 -1.699 -6.287 1.674 -6.102 -5.119 -3.280 -4.318 -6.928 3.211 -3.809 0.959 -1.034 ML 19 17 6 22 6 18 37 100 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 22 41 101 134 -13.801 -12.530 -0.009 -12.508 -7.642 -10.722 -7.137 -8.910 1.995 -7.899 D 21 17 6 22 6 15 32 95 129 -10.547 -9.245 -5.042 -5.724 -5.742 -0.105 IL 22 22 5 22 6 19 38 101 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 41 101 134 -5.938 -0.037 -9.449 -7.617 -8.722 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 120 a a = = MP 24 23 6 28 6 23 40 100 133 -6.676 -6.801 -0.046 -6.294 -14.993 -15.388 2.552 -0.258 -0.343 0.236 -0.885 -8.218 1.035 -3.772 -0.809 -1.649 -2.661 -4.197 0.967 -3.038 0.554 -5.517 ML 25 23 6 28 6 18 36 98 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 18 36 97 131 -8.167 -6.896 -2.805 -6.875 -0.309 -5.088 -0.840 1.251 -1.613 -0.444 D 27 23 6 28 6 15 32 94 128 -10.547 -9.245 -5.042 -5.724 -5.742 -0.105 IL 28 28 5 28 6 20 39 99 132 -6.208 -6.471 -0.049 -8.126 -8.902 -8.563 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 39 99 132 -5.281 -0.059 -8.792 -6.959 -8.065 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 118 a u = = MP 30 29 6 34 6 21 38 98 131 -15.979 -15.918 -0.000 -14.695 -14.974 -15.369 -0.693 -1.594 -2.620 2.212 -1.372 -3.080 1.185 -2.341 -2.967 1.330 -6.298 -1.974 1.957 -2.564 -2.010 -3.844 ML 31 29 6 34 6 18 35 95 128 -10.644 -10.990 -5.705 -0.035 -10.840 -8.370 1.977 -5.878 -5.290 -5.523 MR 32 29 6 34 6 17 35 96 129 -8.167 -6.896 -2.805 -6.875 -0.309 -5.088 -0.840 1.251 -1.613 -0.444 D 33 29 6 34 6 15 32 94 127 -10.547 -9.245 -5.042 -5.724 -5.742 -0.105 IL 34 34 5 34 6 18 36 97 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 97 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 117 U A = = MP 36 35 6 40 6 19 36 96 129 -5.727 -15.918 -0.028 -14.695 -14.974 -15.369 -3.968 -9.976 -5.482 -3.086 -1.782 -11.119 2.331 -9.795 -6.387 -2.748 -6.586 -4.232 3.252 -2.667 -0.881 -5.934 ML 37 35 6 40 6 17 34 94 127 -10.644 -10.990 -5.705 -0.035 -10.840 -8.370 -5.326 1.967 -5.817 -4.428 MR 38 35 6 40 6 16 34 94 128 -8.167 -6.896 -0.511 -6.875 -2.009 -5.088 -0.792 -0.921 -1.476 1.342 D 39 35 6 40 6 15 32 93 127 -10.547 -9.245 -0.564 -5.724 -5.742 -1.817 IL 40 40 5 40 6 18 35 95 128 -7.082 -7.345 -0.026 -9.000 -9.776 -9.437 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 35 95 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 116 G C = = MP 42 41 6 46 4 17 34 94 127 -15.204 -15.411 -0.000 -13.826 -13.766 -10.544 -15.558 -0.264 -15.475 -11.755 -9.840 -15.221 -11.902 3.916 -4.090 -6.656 -10.184 -12.204 -12.260 -14.431 ML 43 41 6 46 4 16 33 93 126 -7.751 -7.933 -0.027 -6.663 -4.954 -4.518 -5.777 1.966 MR 44 41 6 46 4 15 32 93 126 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 31 91 125 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 34 94 128 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 33 94 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 15 32 92 125 -16.132 -0.000 -14.786 -13.418 -12.037 -14.996 2.000 D 49 47 6 50 3 13 31 90 124 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 32 93 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 14 31 91 124 -16.788 -0.000 1.971 -5.539 -4.104 -10.916 D 52 50 3 53 2 13 30 90 123 -8.445 -0.004 IL 53 53 3 53 2 14 32 91 125 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 30 90 123 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 58 89 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 58 89 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 40 71 -0.000 -14.127 -13.535 -14.175 [ MATP 15 ] 12 35 G C = = MP 58 57 1 62 6 2 3 40 71 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -2.487 -10.612 -13.365 -2.025 -14.931 -4.634 -9.834 -13.357 -11.868 3.900 -12.251 -0.950 -9.998 -12.603 -11.988 -3.523 ML 59 57 1 62 6 1 1 38 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 38 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 35 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 40 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 39 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 34 C G = = MP 64 63 6 68 6 2 3 38 69 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -13.052 -13.334 -12.369 -9.571 -10.720 -12.514 3.914 -2.481 -12.473 -9.542 -12.593 -11.738 -0.834 -3.610 -3.350 -11.275 ML 65 63 6 68 6 1 1 37 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 36 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 34 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 38 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 37 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 33 U A = = MP 70 69 6 74 6 2 3 36 67 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -13.052 -13.334 -12.369 -9.571 -4.533 -12.514 -2.707 -11.635 -12.473 -9.542 -12.593 -11.738 3.978 -12.886 -4.710 -11.275 ML 71 69 6 74 6 1 1 35 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 34 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 32 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 36 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 35 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 32 U A = = MP 76 75 6 80 4 2 3 34 65 -15.223 -15.430 -0.000 -13.844 -3.044 -13.328 -12.369 -2.003 -3.596 -12.514 -4.802 -11.636 -12.472 -9.538 -12.593 -11.724 3.928 -12.886 -2.005 -4.845 ML 77 75 6 80 4 1 1 34 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 33 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 32 63 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 35 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 34 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 2 32 63 -16.132 -0.000 -14.786 1.941 -11.744 -2.653 -11.277 D 83 81 6 84 3 0 0 30 61 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 33 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 31 62 -16.132 -0.380 -2.111 1.163 -0.133 -3.405 -0.407 D 86 84 3 87 3 0 0 30 60 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - u - + - ML 88 87 3 90 3 1 1 30 61 -15.753 -1.010 -0.990 0.291 0.207 -4.854 0.667 D 89 87 3 90 3 0 0 29 60 -15.442 -10.955 -0.001 IL 90 90 3 90 3 1 1 32 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - + - ML 91 90 3 93 3 1 1 30 60 -1.939 -2.704 -0.771 -2.067 0.184 -4.841 1.373 D 92 90 3 93 3 0 0 29 60 -16.859 -0.118 -3.669 IL 93 93 3 93 3 1 1 30 61 -2.968 -0.431 -2.939 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - A - + - ML 94 93 3 96 3 1 1 29 60 -15.645 -0.021 -6.097 1.345 -0.659 -0.862 -1.861 D 95 93 3 96 3 0 0 26 57 -15.751 -2.421 -0.298 IL 96 96 3 96 3 1 1 30 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - c - + - ML 97 96 3 99 3 1 1 28 59 -15.729 -0.645 -1.473 -0.161 0.796 -0.650 -0.448 D 98 96 3 99 3 0 0 25 56 -15.516 -4.789 -0.053 IL 99 99 3 99 3 1 1 30 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 28 59 -1.490 -0.635 -13.765 -4.281 -0.125 -8.713 1.599 D 101 99 3 102 3 0 0 25 56 -3.116 -0.178 -10.965 IL 102 102 3 102 3 1 1 28 59 -0.862 -1.153 -12.587 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.975 -5.934 -10.806 -4.263 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 35 61 -16.132 -0.000 -14.786 IL 108 108 2 108 3 1 1 37 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - A - + - ML 109 108 2 111 5 1 1 35 61 -6.846 -0.013 -14.881 -15.093 -15.985 1.769 -5.453 -0.965 -4.138 D 110 108 2 111 5 0 0 35 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 35 61 -5.237 -0.060 -6.916 -8.748 -8.022 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 56 U A = = MP 112 111 3 116 6 2 2 34 60 -16.000 -15.939 -0.055 -14.716 -4.755 -15.390 -3.270 -9.988 -5.945 1.676 -0.473 -11.126 -0.196 -9.810 -2.338 -2.674 -10.657 -6.126 3.407 -5.634 -3.570 -6.628 ML 113 111 3 116 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 37 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 55 g c = = MP 118 117 6 122 6 2 2 24 50 -15.945 -15.885 -0.000 -14.661 -14.941 -15.336 -11.942 -4.177 -12.119 2.820 -14.174 -14.929 -9.579 -12.193 -11.712 2.967 -12.363 -0.133 -9.549 -4.737 -11.436 -3.187 ML 119 117 6 122 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 36 62 -12.682 -11.411 -7.320 -11.389 -0.012 -9.603 -6.873 1.989 -7.329 -5.941 D 121 117 6 122 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 40 54 G C = = MP 124 123 6 128 6 2 2 22 47 -15.945 -15.885 -0.000 -14.661 -14.941 -15.336 -10.229 0.174 -10.072 2.636 -11.247 -10.742 -2.661 -10.715 -10.441 3.008 -10.725 -1.737 -3.285 -9.982 -8.327 -4.597 ML 125 123 6 128 6 1 1 29 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 35 61 -12.682 -0.028 -7.320 -11.389 -6.523 -9.603 -6.873 1.989 -7.329 -5.941 D 127 123 6 128 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 34 60 -1.017 -0.989 -11.657 -9.825 -10.931 0.000 0.000 0.000 0.000 [ MATP 33 ] 41 51 C G = = MP 130 129 6 134 6 2 2 19 38 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -13.052 -13.333 -12.369 -9.570 -4.178 -12.513 3.868 -11.635 -12.473 -0.746 -12.593 -11.737 -1.029 -12.886 -1.953 -11.275 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 50 A U = = MP 136 135 6 140 4 2 2 17 35 -15.223 -15.430 -0.000 -13.844 -5.078 -3.112 -12.235 3.825 -14.371 -15.514 -3.593 -1.911 -11.796 -0.198 -12.466 -1.792 -5.079 -13.535 -11.659 -2.838 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.132 -0.000 -14.786 -5.430 1.921 -6.594 -2.481 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.132 -0.000 -14.786 -13.418 -12.037 -14.996 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.132 -0.000 -14.786 -4.259 -2.755 1.926 -11.191 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.132 -0.000 -14.786 1.946 -2.768 -11.343 -11.193 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.132 -0.000 -14.786 1.946 -11.773 -2.761 -11.290 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.132 -0.000 -14.786 0.742 -11.130 1.219 -11.002 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.878 -2.383 -9.635 -2.933 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 53 88 -16.132 -0.000 -14.786 IL 165 165 2 165 3 1 5 55 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 57 - A - + - ML 166 165 2 168 3 1 4 53 88 -16.132 -0.142 -3.415 1.811 -2.938 -2.184 -2.839 D 167 165 2 168 3 0 3 52 86 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 54 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - G - + - ML 169 168 3 171 2 1 3 52 87 -16.646 -0.000 -1.052 -3.931 1.760 -3.943 D 170 168 3 171 2 0 2 51 86 -12.449 -0.000 IL 171 171 3 171 2 1 4 53 87 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 51 86 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -3.543 -14.127 -13.535 -0.130 [ MATP 48 ] 59 77 G C = = MP 174 173 1 178 6 2 2 30 48 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -10.405 -7.054 -12.622 -4.521 -12.023 -8.224 -6.345 -12.117 -8.421 3.989 -8.616 -4.983 -6.711 -8.688 -8.788 -11.664 ML 175 173 1 178 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 37 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 178 178 5 178 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 60 76 A C = = MP 180 179 6 184 6 2 2 28 46 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -8.523 3.975 -8.660 -3.543 -9.721 -11.204 -5.318 -8.616 -8.260 -3.884 -8.890 -4.531 -5.715 -9.877 -7.230 -7.283 ML 181 179 6 184 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 35 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 184 184 5 184 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 61 75 U A = = MP 186 185 6 190 6 2 2 26 44 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -12.218 -11.918 -12.028 -10.554 -10.258 -11.941 -8.489 -11.644 -10.313 -10.588 -12.229 -11.469 3.995 -10.425 -5.675 -5.497 ML 187 185 6 190 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 190 190 5 190 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 62 74 G C = = MP 192 191 6 196 6 2 2 24 42 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -10.405 -7.054 -12.622 -4.521 -12.023 -8.224 -6.345 -12.117 -8.421 3.989 -8.616 -4.983 -6.711 -8.688 -8.788 -11.664 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 196 196 5 196 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 63 73 G C = = MP 198 197 6 202 6 2 2 22 40 -12.492 -12.431 -3.749 -11.208 -11.487 -0.113 -10.405 -7.054 -12.622 -4.521 -12.023 -8.224 -6.345 -12.117 -8.421 3.989 -8.616 -4.983 -6.711 -8.688 -8.788 -11.664 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 64 72 g c = = MP 204 203 6 208 6 2 2 23 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.014 -18.712 -14.509 -15.191 -15.209 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 65 71 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -15.436 -15.117 -4.331 -0.074 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.845 -0.001 -10.499 1.994 -7.973 -7.247 -7.384 D 217 215 6 218 3 0 0 8 27 -17.476 -12.989 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.845 -0.001 -10.499 -7.992 -7.174 -9.020 1.995 D 220 218 3 221 3 0 0 7 25 -17.476 -12.989 -0.000 IL 221 221 3 221 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - G - + - ML 222 221 3 224 3 1 1 7 12 -1.247 -0.791 -10.499 0.683 -6.421 1.244 -6.185 D 223 221 3 224 3 0 0 3 8 -17.476 -12.989 -0.000 IL 224 224 3 224 3 1 1 6 11 -5.387 -0.040 -8.087 0.000 0.000 0.000 0.000 [ MATL 58 ] 70 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.827 -6.481 1.139 -6.283 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 41 77 -16.132 -0.123 -3.614 IL 230 230 2 230 3 1 3 43 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 78 - A - + - ML 231 230 2 233 3 1 4 41 77 -4.778 -0.054 -14.664 1.960 -11.071 -4.105 -4.331 D 232 230 2 233 3 0 1 40 76 -13.943 -0.005 -8.335 IL 233 233 3 233 3 1 2 41 77 -5.987 -0.026 -8.687 0.000 0.000 0.000 0.000 [ MATL 62 ] 80 - U - + - ML 234 233 3 236 5 1 4 40 76 -15.066 -0.000 -14.881 -15.093 -15.985 -3.597 0.230 -6.093 1.449 D 235 233 3 236 5 0 0 39 74 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 41 76 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 81 115 G C = = MP 237 236 3 241 6 2 4 39 75 -16.000 -4.476 -0.211 -3.460 -14.995 -15.390 -13.474 -4.727 -14.625 0.490 -15.330 -11.917 -9.856 -14.479 -11.907 3.808 -12.161 -0.860 -10.150 -12.313 -12.202 -13.344 ML 238 236 3 241 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 37 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 35 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 39 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 38 74 -2.551 -0.274 -11.216 -9.384 -10.490 0.000 0.000 0.000 0.000 [ MATP 64 ] 82 112 G C = = MP 243 242 6 247 6 2 4 37 72 -15.863 -15.802 -0.090 -4.487 -5.985 -15.253 -10.260 -0.957 -10.111 1.964 -11.275 -1.430 -6.344 -10.756 -2.702 3.320 -10.707 -0.135 -6.603 -5.810 -8.352 -3.148 ML 244 242 6 247 6 1 2 39 75 -13.424 -13.770 -8.485 -0.005 -13.620 -11.150 -8.377 1.996 -8.890 -7.312 MR 245 242 6 247 6 1 1 35 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 34 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 37 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 36 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 83 111 g c = = MP 249 248 6 253 6 2 2 35 70 -4.896 -2.687 -0.362 -6.065 -6.778 -6.794 -9.729 -1.905 -9.551 2.174 -4.188 -1.808 0.160 -4.906 -9.985 2.948 -7.089 -1.362 0.524 -2.914 -5.838 -5.302 ML 250 248 6 253 6 1 2 38 74 -13.954 -14.300 -3.788 -0.109 -14.149 -11.679 1.612 -0.649 -6.435 -1.770 MR 251 248 6 253 6 1 2 31 64 -11.356 -10.085 -2.955 -10.064 -0.208 -8.277 1.774 -1.275 -3.760 -3.418 D 252 248 6 253 6 0 0 32 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 2 37 73 -7.685 -2.913 -1.987 -0.717 -10.380 -10.040 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 33 67 -1.582 -1.568 -7.490 -2.575 -2.686 0.000 0.000 0.000 0.000 [ MATP 66 ] 85 107 c g = = MP 255 254 6 259 6 2 2 31 66 -15.588 -15.527 -0.371 -6.112 -4.221 -2.654 -2.477 -1.098 -9.607 0.601 -1.499 -5.379 2.913 -2.253 -4.554 -0.745 -10.029 -7.074 2.195 -9.781 -1.050 -8.301 ML 256 254 6 259 6 1 1 37 73 -14.180 -14.527 -9.241 -0.179 -14.376 -3.120 -0.735 1.751 -5.247 -6.962 MR 257 254 6 259 6 1 1 29 61 -13.244 -2.207 -7.882 -11.951 -0.513 -3.678 1.466 -4.660 -1.897 -0.106 D 258 254 6 259 6 0 0 27 59 -15.387 -14.086 -9.883 -10.565 -1.920 -0.446 IL 259 259 5 259 6 1 1 32 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 2 30 61 -5.660 -0.045 -9.172 -7.339 -8.445 0.000 0.000 0.000 0.000 [ MATP 67 ] 86 105 c a = = MP 261 260 6 265 4 2 2 28 57 -14.464 -5.606 -0.304 -2.562 -1.355 -2.551 -6.647 1.129 2.821 -0.874 1.198 -4.337 -4.026 0.646 -7.287 -2.669 0.205 -3.272 -2.524 -3.898 ML 262 260 6 265 4 1 1 36 72 -2.421 -11.382 -0.325 -6.111 -2.895 1.902 -7.718 -3.015 MR 263 260 6 265 4 1 1 28 59 -11.964 -1.808 -1.680 -1.314 1.134 0.784 -4.061 -5.421 D 264 260 6 265 4 0 0 26 57 -12.897 -12.579 -1.482 -0.640 IL 265 265 5 265 4 1 2 39 74 -0.745 -8.934 -1.318 -11.419 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 2 28 55 -1.947 -0.436 -9.273 0.000 0.000 0.000 0.000 [ MATL 68 ] 90 - c - + - ML 267 266 6 269 3 1 2 26 53 -5.114 -0.042 -14.375 0.397 0.621 -2.248 -0.097 D 268 266 6 269 3 0 0 25 52 -15.542 -0.131 -3.530 IL 269 269 3 269 3 1 1 27 54 -1.671 -0.549 -8.605 0.000 0.000 0.000 0.000 [ MATL 69 ] 93 - U - + - ML 270 269 3 272 3 1 1 25 52 -16.101 -0.003 -9.024 -2.196 -1.751 -1.036 1.583 D 271 269 3 272 3 0 0 24 51 -12.020 -0.401 -2.044 IL 272 272 3 272 3 1 1 27 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 94 - a - + - ML 273 272 3 275 3 1 1 24 51 -16.123 -0.006 -7.948 0.983 0.336 -0.738 -2.632 D 274 272 3 275 3 0 0 23 50 -10.436 -0.053 -4.828 IL 275 275 3 275 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 95 - a - + - ML 276 275 3 278 3 1 1 23 50 -6.959 -0.162 -3.344 0.760 -0.973 0.474 -1.295 D 277 275 3 278 3 0 0 23 50 -0.128 -5.224 -4.102 IL 278 278 3 278 3 1 1 24 50 -4.612 -0.070 -7.312 0.000 0.000 0.000 0.000 [ MATL 72 ] 97 - A - + - ML 279 278 3 281 3 1 1 22 49 -15.984 -0.237 -2.721 1.300 -0.591 -3.241 -0.381 D 280 278 3 281 3 0 0 12 39 -14.206 -9.719 -0.002 IL 281 281 3 281 3 1 1 24 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 98 - A - + - ML 282 281 3 284 3 1 1 22 48 -3.756 -1.182 -1.044 1.613 -1.576 -2.647 -1.164 D 283 281 3 284 3 0 0 9 36 -15.463 -8.494 -0.004 IL 284 284 3 284 3 1 1 24 51 -1.000 -1.692 -2.391 0.000 0.000 0.000 0.000 [ MATL 74 ] 102 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.067 0.739 -4.718 0.317 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Phe LENG 90 MAXL 162 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Phe-final-vert.cm ../Phe-2nd-align.sto NSEQ 1089 EFFN 7.797443 CKSUM 1527184349 STATS LOCAL MSV -8.8831 0.71878 STATS LOCAL VITERBI -9.6973 0.71878 STATS LOCAL FORWARD -3.4951 0.71878 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15063 1.52509 1.46259 1.45104 1.38629 1.38629 1.38629 1.38629 0.09719 4.73342 2.47904 1.46634 0.26236 0.00000 * 1 2.97618 3.98142 0.09805 3.74012 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01920 4.65543 4.65543 1.46634 0.26236 1.73603 0.19385 2 2.94018 1.07463 2.79233 0.60799 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01982 4.66519 4.58481 1.46634 0.26236 2.35115 0.10011 3 1.86449 1.39017 1.86380 0.81892 3 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01985 4.66440 4.58272 1.46634 0.26236 0.21930 1.62495 4 1.14170 1.51768 1.71217 1.26929 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02588 4.09016 4.73193 0.84736 0.55957 1.15336 0.37918 5 1.31954 1.49464 1.54374 1.22135 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01778 4.73193 4.73193 1.46634 0.26236 1.15336 0.37918 6 2.23471 1.13898 2.06352 0.80783 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.03328 3.73298 4.73193 0.62260 0.76905 0.99737 0.46021 7 2.68593 4.08870 0.11056 3.92478 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 8 4.07623 3.83616 4.62693 0.04954 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 9 0.07097 3.97239 3.48939 3.95499 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 10 2.00807 2.77260 0.31527 2.60828 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 11 3.79765 0.15146 3.58814 2.40272 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 12 4.87631 3.23164 4.81607 0.05680 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 13 4.62246 3.96182 4.71712 0.03853 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 14 0.08980 4.06243 3.01987 3.91860 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 15 0.77214 1.55157 2.38538 1.45241 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.22889 4.73342 1.63074 1.46634 0.26236 1.09861 0.40547 16 1.23860 1.35337 2.38534 1.02225 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.52114 4.52641 0.92801 1.46634 0.26236 3.18872 0.04210 17 1.78630 1.41178 2.40025 0.69712 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.79065 1.78346 0.97182 0.24181 1.53806 0.11404 2.22768 18 0.69019 1.80320 1.85063 1.73382 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04998 4.48541 3.28399 1.46634 0.26236 1.55359 0.23761 19 1.34977 1.14758 1.78721 1.36309 23 c + - _ 1.38629 1.38629 1.38629 1.38629 0.30104 4.51419 1.39031 1.46634 0.26236 1.87662 0.16618 20 2.21235 1.55906 2.78943 0.48003 24 U + - _ 1.38629 1.38629 1.38629 1.38629 0.35436 1.25676 4.28296 0.80059 0.59614 0.04627 3.09622 21 0.06406 4.00522 3.95139 3.70483 31 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 22 0.04461 4.87853 3.72664 4.42692 32 A = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 23 0.06583 4.94295 3.07151 4.58297 33 A = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 24 2.66482 3.64008 0.13945 3.37256 34 G = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 25 2.82047 0.38339 2.59239 1.69265 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 26 0.25612 3.22973 2.01678 2.93185 36 A + - , 1.38629 1.38629 1.38629 1.38629 0.02490 4.14770 4.73342 0.88887 0.52953 1.09861 0.40547 27 1.61448 1.53753 1.92628 0.82006 38 u = - < 1.38629 1.38629 1.38629 1.38629 0.04881 4.73342 3.24838 1.46634 0.26236 1.09861 0.40547 28 1.15719 2.78850 0.60081 2.58031 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.01830 4.70292 4.70292 1.46634 0.26236 1.85866 0.16946 29 1.13736 2.71519 0.62216 2.57228 40 G = - < 1.38629 1.38629 1.38629 1.38629 0.01830 4.70292 4.70292 1.46634 0.26236 0.37362 1.16552 30 3.54980 0.23661 2.79257 2.11437 41 C = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 31 0.11629 3.80585 2.74479 3.76005 42 A = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 32 3.51424 0.12270 4.05322 2.68329 43 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 33 4.07623 3.83616 4.62693 0.04954 44 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 34 2.98096 3.24565 0.12594 3.55279 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 35 0.09582 3.21680 3.70170 3.62662 46 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 36 0.08592 4.08784 3.07498 3.94438 47 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 37 0.90200 3.51488 0.64711 3.19575 48 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 38 0.17965 2.73144 3.34501 2.74807 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 39 3.99930 2.93651 3.77221 0.09914 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 40 2.38467 2.87421 0.20608 3.27939 51 G = - > 1.38629 1.38629 1.38629 1.38629 0.04881 3.24838 4.73342 0.85385 0.55473 1.09861 0.40547 41 2.81403 0.64796 2.52758 1.08746 54 C = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 42 2.85202 0.71348 2.58350 0.97597 55 c = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 43 0.86469 2.12266 1.43779 1.50664 56 a = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 44 0.25259 2.72622 2.53774 2.54206 57 A + - , 1.38629 1.38629 1.38629 1.38629 0.09796 4.73342 2.47078 1.46634 0.26236 1.09861 0.40547 45 1.91764 3.04914 0.29736 2.76672 58 G + - , 1.38629 1.38629 1.38629 1.38629 1.65894 4.65467 0.22297 1.46634 0.26236 0.31194 1.31687 46 1.97521 2.13739 0.47296 2.11900 59 G = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 47 1.16933 1.84299 1.02277 1.76328 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 48 2.11124 1.34172 1.69917 0.83314 61 u = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 49 1.96434 2.13226 0.47832 2.10899 62 G = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 50 1.96377 2.13200 0.47861 2.10846 63 G = - < 1.38629 1.38629 1.38629 1.38629 0.38858 3.38431 1.24452 1.46634 0.26236 4.46804 0.01154 51 1.79933 1.30706 1.07866 1.49644 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.55054 0.01062 52 1.79943 1.30703 1.07862 1.49646 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.83732 0.06037 53 0.62677 2.05886 1.88316 1.68212 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07833 3.27891 3.27891 1.46634 0.26236 4.50133 0.01116 54 1.55106 1.75129 1.98466 0.74024 67 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07833 3.27891 3.27891 1.46634 0.26236 4.50133 0.01116 55 1.08905 1.95387 1.17103 1.55263 68 a + - _ 1.38629 1.38629 1.38629 1.38629 0.16243 2.18702 3.27891 0.57393 0.82853 4.50133 0.01116 56 1.05960 1.94897 1.20933 1.54840 70 a + - _ 1.38629 1.38629 1.38629 1.38629 0.28318 3.27891 1.56569 1.46634 0.26236 4.50133 0.01116 57 1.73068 1.22003 1.16195 1.53834 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.55054 0.01062 58 1.73055 1.22008 1.16200 1.53830 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.41075 0.09403 59 2.32988 0.55076 1.95874 1.68663 73 C = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 60 2.33038 0.55061 1.95886 1.68672 74 C = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 61 0.96249 1.86089 1.17740 1.86793 75 a = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 62 1.98644 0.86323 1.65717 1.38492 76 c = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 63 2.33913 0.54810 1.96095 1.68838 77 C = - > 1.38629 1.38629 1.38629 1.38629 0.38858 3.38431 1.24452 1.46634 0.26236 0.02321 3.77489 64 0.08453 3.90845 3.41383 3.57312 78 A + - , 1.38629 1.38629 1.38629 1.38629 0.04895 3.26097 4.66519 0.43477 1.04246 0.21136 1.65800 65 2.50292 1.34699 3.16243 0.48482 80 U + - , 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 66 2.26049 3.77930 0.16660 3.63729 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 67 1.45862 2.27861 0.55832 2.37678 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.73342 3.89094 1.46634 0.26236 1.09861 0.40547 68 1.35920 1.98592 0.81177 1.82134 83 g = - < 1.38629 1.38629 1.38629 1.38629 0.11516 3.42782 2.57283 0.47993 0.96450 1.31756 0.31168 69 1.67644 1.07095 1.80423 1.18522 85 c = - < 1.38629 1.38629 1.38629 1.38629 0.19243 4.65342 1.79868 1.46634 0.26236 1.71530 0.19834 70 1.56418 1.09026 1.62162 1.35854 86 c = - < 1.38629 1.38629 1.38629 1.38629 0.16853 3.23205 2.15747 1.04666 0.43249 0.84558 0.56090 71 1.17932 1.20661 2.15218 1.28348 90 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04492 3.41337 4.50983 0.75092 0.63853 0.16642 1.87529 72 2.07758 2.15099 2.11216 0.45032 93 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.71610 4.55962 1.46634 0.26236 0.68614 0.70021 73 0.84984 1.38444 1.81496 1.83753 94 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72788 4.72788 1.46634 0.26236 0.80137 0.59550 74 0.99403 1.88692 1.25280 1.64675 95 a + - _ 1.38629 1.38629 1.38629 1.38629 0.10896 4.18310 2.43061 0.91608 0.51097 1.09861 0.40547 75 0.69801 1.74266 2.35039 1.46084 97 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14979 4.65092 2.04361 1.46634 0.26236 2.48509 0.08699 76 0.47981 2.11901 2.36790 1.78814 98 A + - _ 1.38629 1.38629 1.38629 1.38629 0.59013 2.73582 0.96520 0.68253 0.70388 3.15328 0.04365 77 1.31315 1.20572 2.20257 1.13621 102 u + - _ 1.38629 1.38629 1.38629 1.38629 0.48721 2.56154 1.17610 0.57859 0.82254 0.28158 1.40481 78 1.17688 1.67237 1.32835 1.43110 105 a = - > 1.38629 1.38629 1.38629 1.38629 0.03758 3.68769 4.43539 0.77386 0.61846 0.73438 0.65355 79 1.30042 1.88604 0.99599 1.57720 107 g = - > 1.38629 1.38629 1.38629 1.38629 0.14522 2.15089 3.97437 0.50853 0.91975 1.36687 0.29424 80 2.02513 0.83535 1.89047 1.26126 111 c = - > 1.38629 1.38629 1.38629 1.38629 0.01989 4.62066 4.62066 1.46634 0.26236 1.16013 0.37607 81 2.67931 0.58778 2.43916 1.24273 112 C = - > 1.38629 1.38629 1.38629 1.38629 0.06014 3.01861 4.65683 0.47036 0.98024 0.19324 1.73889 82 3.82694 0.21163 3.58732 1.95694 115 C = - > 1.38629 1.38629 1.38629 1.38629 0.02828 4.73342 3.95852 1.46634 0.26236 1.09861 0.40547 83 4.13282 0.12818 3.85273 2.48835 116 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01869 4.72307 4.64269 1.46634 0.26236 1.42800 0.27416 84 0.91743 2.20899 1.02050 2.03845 117 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01795 4.72232 4.72232 1.46634 0.26236 1.44787 0.26797 85 1.32734 1.64288 1.34637 1.26865 118 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02544 4.12099 4.72232 0.87711 0.53783 0.67298 0.71373 86 1.08951 1.83427 1.23225 1.54998 120 a = - ) 1.38629 1.38629 1.38629 1.38629 0.03017 3.86743 4.73268 0.69930 0.68703 1.12613 0.39198 87 1.03085 2.04013 1.10085 1.71093 122 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01776 4.73268 4.73268 1.46634 0.26236 1.04575 0.43298 88 0.64642 2.92494 1.04163 2.66592 123 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 89 3.50796 0.14332 3.62544 2.56490 124 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 90 0.04863 4.31339 3.92180 4.24907 125 A + - : 1.38629 1.38629 1.38629 1.38629 0.00891 4.72458 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Pro STATES 289 NODES 76 CLEN 90 W 107 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:58 2015 COM [1] cmbuild --hand --enone Pro-final-vert.cm ../Pro-2nd-align.sto COM [2] cmcalibrate --seed 208 Pro-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1095 EFFN 1095.000000 CKSUM 1723993289 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4123 0.71863 ECMLC 0.70822 -5.90230 2.79756 1600000 568931 0.002109 ECMGC 0.31630 -38.52226 -22.84440 1600000 56979 0.007020 ECMLI 0.67159 -5.96868 3.12402 1600000 538552 0.002228 ECMGI 0.31542 -35.72069 -20.12705 1600000 54719 0.007310 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 0 107 149 -15.025 -16.270 -0.000 -12.724 IL 1 1 2 1 4 12 34 108 150 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 35 108 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 114 - A - + MR 3 2 3 5 5 18 39 107 149 -15.074 -0.001 -14.889 -11.461 -15.993 1.892 -5.938 -1.878 -10.639 D 4 2 3 5 5 9 30 105 147 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 12 34 107 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 113 C G = = MP 6 5 3 10 6 18 39 106 148 -16.007 -15.947 -0.001 -10.044 -15.003 -15.398 -13.053 -13.312 -12.376 -1.482 -4.514 -12.526 3.904 -11.644 -12.477 -0.998 -12.600 -11.677 -3.015 -12.895 -8.435 -11.280 ML 7 5 3 10 6 11 32 104 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 11 32 104 146 -7.522 -6.251 -2.160 -6.229 -0.518 -4.443 -0.072 -0.980 0.839 -0.410 D 9 5 3 10 6 7 27 100 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 11 33 105 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 11 34 105 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 112 A U = = MP 12 11 6 16 6 17 37 104 146 -16.006 -15.945 -0.001 -10.822 -15.002 -15.397 -12.048 -10.708 -4.133 3.847 -14.382 -15.538 -3.695 -12.286 -11.804 0.235 -12.473 -2.116 -9.766 -13.549 -11.671 -3.900 ML 13 11 6 16 6 11 32 101 144 -7.540 -7.886 -2.601 -0.331 -7.736 -5.266 1.475 -1.585 -1.294 -1.060 MR 14 11 6 16 6 10 32 102 144 -7.522 -6.251 -0.907 -6.229 -1.363 -4.443 -0.208 -0.509 -0.830 0.902 D 15 11 6 16 6 7 26 98 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 11 33 103 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 11 33 103 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 111 g c = = MP 18 17 6 22 6 15 36 102 144 -16.006 -15.945 -0.000 -14.721 -15.001 -15.396 -9.979 -2.598 -9.798 2.560 -10.929 -10.394 -3.372 -5.479 -10.235 2.655 -4.133 1.740 -3.780 -5.621 -8.003 -5.376 ML 19 17 6 22 6 11 32 100 142 -7.956 -8.302 -0.820 -1.310 -8.152 -5.682 0.400 -1.355 0.763 -0.755 MR 20 17 6 22 6 10 30 100 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 7 26 96 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 11 32 101 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 11 32 101 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 110 A U = = MP 24 23 6 28 6 13 34 100 142 -5.494 -15.946 -0.033 -14.723 -15.003 -15.398 -12.038 -1.000 -12.228 3.145 -14.338 -15.285 -3.137 -12.281 -11.795 2.393 -12.457 0.361 -9.717 -13.468 -11.616 -10.833 ML 25 23 6 28 6 10 30 97 140 -7.112 -7.458 -2.173 -0.466 -7.308 -4.838 1.242 -1.161 -0.902 -0.616 MR 26 23 6 28 6 10 30 98 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 7 26 94 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 8 26 93 135 -7.334 -7.597 -5.514 -9.252 -10.028 -0.053 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 11 32 99 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 109 a u = = MP 30 29 6 34 6 14 32 98 140 -15.975 -15.914 -0.000 -14.690 -14.970 -15.365 -4.643 -8.710 -9.898 2.888 -3.842 -10.521 -0.646 -10.571 -10.310 2.788 -5.348 -0.260 -6.377 -9.773 -8.121 -4.016 ML 31 29 6 34 6 10 30 96 138 -7.112 -7.458 -2.173 -0.466 -7.308 -4.838 1.242 -1.161 -0.902 -0.616 MR 32 29 6 34 6 10 29 96 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 7 25 91 133 -14.567 -13.265 -9.063 -9.745 -9.762 -0.006 IL 34 34 5 34 6 10 31 97 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 11 31 97 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 108 A U = = MP 36 35 6 40 6 12 30 96 138 -15.975 -15.914 -0.000 -14.690 -14.970 -15.365 -9.964 -8.603 -9.784 3.101 -10.916 -10.384 -1.808 -10.471 -10.218 2.118 -10.467 1.311 -3.581 -5.709 -3.043 -3.614 ML 37 35 6 40 6 10 29 95 137 -7.112 -7.458 -0.574 -1.867 -7.308 -4.838 1.242 -1.161 -0.902 -0.616 MR 38 35 6 40 6 9 28 94 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 7 25 91 133 -14.567 -13.265 -9.063 -9.745 -9.762 -0.006 IL 40 40 5 40 6 10 29 95 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 10 29 95 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 107 a u = = MP 42 41 6 46 4 10 28 94 136 -15.198 -15.405 -0.000 -13.819 -11.731 -1.702 -0.488 2.946 -13.600 -13.758 -8.870 -12.028 -11.590 2.522 -12.174 0.488 -3.669 -12.550 -10.789 -4.439 ML 43 41 6 46 4 9 27 93 135 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 8 27 93 135 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 7 25 91 133 -9.991 -9.673 -7.688 -0.010 IL 46 46 5 46 4 9 28 94 136 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 9 27 94 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 8 26 92 134 -16.108 -0.000 -14.762 -12.445 -3.851 -13.520 1.975 D 49 47 6 50 3 7 25 91 133 -12.095 -0.017 -6.486 IL 50 50 3 50 3 8 26 93 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 7 25 91 133 -16.796 -0.000 1.886 -5.538 -1.828 -10.572 D 52 50 3 53 2 6 24 90 132 -8.445 -0.004 IL 53 53 3 53 2 7 25 91 133 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 6 24 90 132 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 57 87 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 57 87 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 39 69 -0.000 -14.135 -13.543 -14.183 [ MATP 15 ] 11 33 G U = = MP 58 57 1 62 6 2 3 39 69 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -12.050 -1.337 -12.245 -0.021 -14.386 -15.541 -9.844 -12.288 -11.805 0.615 -12.475 3.643 -9.769 -13.551 -11.675 -0.769 ML 59 57 1 62 6 1 1 37 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 37 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 34 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 38 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 38 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 32 U A = = MP 64 63 6 68 6 2 3 37 67 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.053 -13.307 -12.377 -9.546 -10.734 -12.527 -6.446 -11.645 -2.814 -9.527 -12.600 -11.664 3.971 -12.896 -2.636 -11.280 ML 65 63 6 68 6 1 1 35 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 35 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 32 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 36 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 36 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 31 U A = = MP 70 69 6 74 6 2 3 35 65 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -4.100 -13.289 -12.360 -9.509 -10.718 -12.514 -0.101 -11.630 -5.536 -0.998 -12.586 -11.647 3.750 -12.872 -0.074 -3.631 ML 71 69 6 74 6 1 1 33 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 33 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 31 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 34 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 34 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 30 U G = = MP 76 75 6 80 4 2 3 33 63 -15.231 -15.438 -0.000 -13.852 -7.189 -13.276 -1.622 -0.998 -10.714 -5.277 -2.199 -4.307 -12.452 -9.448 -2.814 -11.625 2.036 -3.934 3.210 0.384 ML 77 75 6 80 4 1 1 32 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 31 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 30 60 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 33 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 33 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 31 61 -16.140 -0.017 -6.403 1.878 -5.755 -2.543 -2.896 D 83 81 6 84 3 0 0 29 59 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 32 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 30 60 -16.123 -0.473 -1.840 1.469 -2.840 -0.611 -1.191 D 86 84 3 87 3 0 0 28 58 -11.197 -6.710 -0.014 IL 87 87 3 87 3 1 1 31 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 29 59 -15.651 -1.535 -0.611 -1.523 -0.754 -4.583 1.593 D 89 87 3 90 3 0 0 28 58 -15.764 -11.277 -0.001 IL 90 90 3 90 3 1 1 30 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 27 58 -3.516 -6.177 -0.154 -0.097 -2.123 -7.615 1.501 D 92 90 3 93 3 0 0 28 58 -17.153 -0.026 -5.813 IL 93 93 3 93 3 1 1 30 60 -1.310 -0.750 -8.800 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - + - ML 94 93 3 96 3 1 2 28 58 -15.756 -0.000 -14.410 -0.102 -3.693 -0.092 1.037 D 95 93 3 96 3 0 0 23 53 -15.467 -4.800 -0.053 IL 96 96 3 96 3 1 1 29 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - U - + - ML 97 96 3 99 3 1 1 27 57 -15.771 -1.869 -0.462 -0.071 -1.911 -0.948 1.179 D 98 96 3 99 3 0 0 21 52 -15.415 -10.928 -0.001 IL 99 99 3 99 3 1 1 30 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - + - ML 100 99 3 102 3 1 1 28 58 -0.808 -1.222 -12.556 -1.482 -0.928 -7.395 1.637 D 101 99 3 102 3 0 0 21 51 -5.737 -0.028 -11.608 IL 102 102 3 102 3 1 1 28 58 -0.883 -1.129 -11.791 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.973 -11.493 -5.745 -4.209 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.140 -0.000 -14.794 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - u - + - ML 109 108 2 111 5 1 1 26 45 -6.606 -0.015 -14.889 -15.101 -15.993 -0.179 -0.412 -0.197 0.578 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.453 -0.052 -7.132 -8.964 -8.238 0.000 0.000 0.000 0.000 [ MATP 30 ] 36 53 C G = = MP 112 111 3 116 6 2 2 25 44 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -10.830 -10.568 -10.765 -2.885 -4.285 -11.508 3.117 -10.252 -10.650 -0.970 -11.119 -8.168 2.409 -10.983 0.162 -2.404 ML 113 111 3 116 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 37 52 c g = = MP 118 117 6 122 6 2 2 23 42 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.060 -13.341 -12.377 -9.578 -10.728 -3.580 2.862 -1.487 -12.481 -9.550 -12.601 -11.745 2.853 -12.894 -0.017 -3.805 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 38 51 A U = = MP 124 123 6 128 6 2 2 21 40 -16.008 -6.412 -0.018 -11.012 -15.003 -15.398 -10.065 -3.302 -9.890 3.272 -11.032 -10.505 -0.927 -10.568 -5.877 2.122 -10.567 -0.146 -1.464 -9.759 -8.107 -3.931 ML 125 123 6 128 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 21 39 -5.633 -0.046 -9.144 -7.312 -8.417 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 49 G C = = MP 130 129 6 134 6 2 2 19 38 -16.007 -15.946 -0.000 -14.723 -15.003 -15.398 -12.376 -4.803 -12.679 -1.876 -14.629 -13.332 -9.850 -12.705 -11.839 3.157 -12.369 2.759 -9.882 -13.032 -11.826 -11.287 ML 131 129 6 134 6 1 1 23 42 -7.024 -7.371 -0.619 -1.779 -7.220 -4.750 -0.216 -1.157 1.012 -0.570 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 48 C G = = MP 136 135 6 140 4 2 2 17 35 -15.231 -15.438 -0.000 -13.852 -13.060 -13.342 -12.377 -9.578 -2.481 -12.521 3.535 -1.487 -12.481 -9.550 -12.601 -11.746 0.853 -4.286 1.006 -11.283 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.140 -0.000 -14.794 -12.107 -1.810 -13.083 1.893 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.140 -0.000 -14.794 -12.695 -4.762 -13.847 1.987 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.140 -0.000 -14.794 -13.426 -12.045 -15.004 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.140 -0.000 -14.794 -10.665 -12.422 2.000 -11.412 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - G - * - ML 154 153 3 156 3 1 1 9 28 -16.140 -0.000 -14.794 -10.665 -12.422 2.000 -11.412 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.140 -0.000 -14.794 -3.351 -3.008 1.917 -11.051 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - a - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.650 -4.666 0.362 0.145 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 1 56 99 -16.140 -0.000 -14.794 IL 165 165 2 165 3 1 1 58 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 54 - u - + - ML 166 165 2 168 3 1 1 56 99 -16.140 -0.013 -6.820 -0.073 -1.816 0.345 0.580 D 167 165 2 168 3 0 0 55 97 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 57 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 55 - G - + - ML 169 168 3 171 2 1 1 55 98 -16.783 -0.000 -1.096 -2.972 1.748 -4.417 D 170 168 3 171 2 0 0 54 97 -9.722 -0.002 IL 171 171 3 171 2 1 1 56 98 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 54 97 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.831 -14.135 -13.543 -0.007 [ MATP 48 ] 56 73 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 57 72 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 58 71 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 59 70 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 60 69 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 61 68 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 62 67 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.444 -15.125 -4.028 -0.091 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 63 - A - + - ML 216 215 6 218 3 1 1 13 32 -12.147 -0.001 -10.801 1.323 -6.935 0.567 -6.837 D 217 215 6 218 3 0 0 8 26 -17.466 -12.979 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 64 - U - + - ML 219 218 3 221 3 1 1 12 30 -12.147 -0.001 -10.801 -8.489 -7.589 -9.574 1.997 D 220 218 3 221 3 0 0 7 25 -17.466 -12.979 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 65 - G - + - ML 222 221 3 224 3 1 1 10 29 -12.147 -0.001 -10.801 -6.760 -8.529 1.994 -7.522 D 223 221 3 224 3 0 0 5 24 -17.466 -12.979 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 66 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -6.760 -8.529 1.994 -7.522 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 49 91 -16.140 -0.046 -5.001 IL 230 230 2 230 3 1 1 50 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 74 - G - + - ML 231 230 2 233 3 1 1 49 91 -3.639 -0.127 -8.080 0.092 -10.422 1.532 -4.608 D 232 230 2 233 3 0 0 38 80 -12.574 -8.087 -0.006 IL 233 233 3 233 3 1 1 49 91 -7.176 -0.012 -9.876 0.000 0.000 0.000 0.000 [ MATL 62 ] 76 - U - + - ML 234 233 3 236 5 1 1 48 90 -15.023 -0.000 -14.838 -15.050 -15.942 -1.624 -1.090 -3.881 1.650 D 235 233 3 236 5 0 0 37 79 -10.695 -6.539 -9.956 -8.331 -0.022 IL 236 236 3 236 5 1 1 48 90 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 77 106 G C = = MP 237 236 3 241 6 2 2 47 89 -15.957 -3.973 -0.096 -10.511 -14.953 -15.348 -6.319 -3.772 -1.790 1.346 -4.759 -10.350 -5.951 -4.338 -10.190 3.048 -10.437 1.968 -3.736 -9.608 -0.475 -8.718 ML 238 236 3 241 6 1 1 45 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 44 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 32 74 -15.197 -13.895 -9.692 -10.374 -10.392 -0.004 IL 241 241 5 241 6 1 1 46 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 46 88 -2.702 -0.244 -11.637 -9.805 -10.911 0.000 0.000 0.000 0.000 [ MATP 64 ] 78 103 g c = = MP 243 242 6 247 6 2 2 45 87 -15.956 -15.895 -0.002 -9.335 -14.952 -15.347 -9.925 -3.406 -9.743 2.033 -10.874 -10.339 -1.442 -5.944 -0.481 2.442 -10.428 2.340 -2.872 -5.588 -4.969 -5.495 ML 244 242 6 247 6 1 1 43 85 -7.244 -7.590 -2.305 -0.419 -7.440 -4.970 -0.418 -1.409 1.203 -0.806 MR 245 242 6 247 6 1 1 42 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 31 73 -15.197 -13.895 -9.692 -10.374 -10.392 -0.004 IL 247 247 5 247 6 1 1 44 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 44 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 79 102 G C = = MP 249 248 6 253 6 2 2 43 85 -6.408 -5.207 -0.104 -11.290 -14.949 -5.049 -9.925 -4.039 -9.743 2.158 -10.874 -4.623 -3.437 -10.433 -10.181 3.081 -10.427 0.887 -0.453 -9.597 -7.948 -1.781 ML 250 248 6 253 6 1 1 42 84 -8.356 -8.703 -0.662 -3.111 -8.552 -2.035 0.716 -1.519 0.571 -0.936 MR 251 248 6 253 6 1 1 40 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 30 72 -15.197 -13.895 -9.692 -10.374 -10.392 -0.004 IL 253 253 5 253 6 1 1 42 84 -6.416 -6.679 -0.042 -8.334 -9.110 -8.770 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 42 85 -1.439 -0.825 -10.858 -3.936 -10.131 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 99 g c = = MP 255 254 6 259 6 2 2 40 83 -15.907 -15.846 -0.256 -4.449 -3.816 -4.445 -9.911 -1.207 -9.732 2.384 -10.867 -10.335 -2.980 -10.418 -3.460 2.989 -1.487 -0.250 -6.199 -9.592 -0.092 -4.850 ML 256 254 6 259 6 1 1 44 86 -6.884 -7.231 -0.700 -1.639 -7.080 -4.610 1.093 -0.967 -0.713 -0.423 MR 257 254 6 259 6 1 1 34 77 -9.242 -7.971 -3.880 -7.949 -3.083 -0.314 -2.330 -3.651 1.848 -3.034 D 258 254 6 259 6 0 0 28 70 -16.082 -14.780 -10.577 -11.259 -11.277 -0.002 IL 259 259 5 259 6 1 1 40 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 38 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 98 G C = = MP 261 260 6 265 4 2 2 35 77 -7.222 -15.080 -0.041 -5.547 -9.627 -8.267 -3.891 -1.058 -10.566 -10.042 0.909 -10.132 -9.882 3.558 -2.046 0.074 -1.607 -9.300 -2.634 -8.410 ML 262 260 6 265 4 1 1 45 88 -0.089 -9.627 -4.166 -8.356 -1.875 1.823 -2.668 -4.920 MR 263 260 6 265 4 1 1 27 69 -11.541 -10.570 -1.816 -0.484 0.499 -5.751 1.301 -3.254 D 264 260 6 265 4 0 0 25 67 -12.273 -11.954 -0.315 -2.353 IL 265 265 5 265 4 1 1 44 87 -0.627 -9.868 -1.552 -6.626 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 87 - U - + - ML 267 266 6 269 3 1 1 22 45 -5.382 -0.048 -6.818 -4.246 -4.790 -1.349 1.815 D 268 266 6 269 3 0 0 14 37 -14.041 -0.655 -1.455 IL 269 269 3 269 3 1 1 26 49 -1.175 -0.849 -8.923 0.000 0.000 0.000 0.000 [ MATL 69 ] 90 - U - + - ML 270 269 3 272 3 1 1 12 31 -16.082 -0.014 -6.702 -3.089 -5.835 -0.164 1.572 D 271 269 3 272 3 0 0 13 31 -12.916 -0.745 -1.310 IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 91 - a - + - ML 273 272 3 275 3 1 1 11 29 -16.104 -0.006 -7.960 0.916 -2.469 -1.478 0.654 D 274 272 3 275 3 0 0 12 30 -12.263 -0.857 -1.159 IL 275 275 3 275 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 92 - A - + - ML 276 275 3 278 3 1 1 10 28 -6.311 -0.259 -2.720 1.220 -5.524 0.320 -1.322 D 277 275 3 278 3 0 0 8 27 -11.538 -1.703 -0.530 IL 278 278 3 278 3 1 1 10 28 -4.663 -0.067 -7.363 0.000 0.000 0.000 0.000 [ MATL 72 ] 94 - A - + - ML 279 278 3 281 3 1 1 9 27 -15.889 -0.061 -4.606 1.854 -9.777 -2.220 -2.554 D 280 278 3 281 3 0 0 8 27 -14.918 -6.987 -0.011 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 95 - g - + - ML 282 281 3 284 3 1 1 6 11 -5.515 -0.177 -3.420 0.568 -3.059 0.764 -0.515 D 283 281 3 284 3 0 0 3 8 -15.190 -3.264 -0.159 IL 284 284 3 284 3 1 1 6 11 -5.125 -0.049 -7.825 0.000 0.000 0.000 0.000 [ MATL 74 ] 97 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.764 -2.499 -2.842 1.822 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Pro LENG 90 MAXL 162 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:58 2015 COM [1] cmbuild --hand --enone Pro-final-vert.cm ../Pro-2nd-align.sto NSEQ 1095 EFFN 12.243061 CKSUM 1723993289 STATS LOCAL MSV -9.0990 0.71863 STATS LOCAL VITERBI -9.7048 0.71863 STATS LOCAL FORWARD -3.5031 0.71863 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42550 1.76756 1.26244 1.18449 1.38629 1.38629 1.38629 1.38629 0.01423 4.97222 4.93299 1.46634 0.26236 0.00000 * 1 3.34665 0.15693 3.07346 2.75237 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01396 4.97194 4.97194 1.46634 0.26236 1.11186 0.39891 2 0.16528 4.32026 2.09886 4.10722 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01396 4.97194 4.97194 1.46634 0.26236 1.07263 0.41871 3 1.20671 2.89842 0.54122 2.75395 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 4 0.78791 3.18206 0.77723 3.12287 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 5 1.07662 2.56389 0.66065 2.72216 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.97222 3.65578 1.46634 0.26236 1.09861 0.40547 6 0.96480 2.77887 0.72235 2.64196 7 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01422 4.95313 4.95313 1.46634 0.26236 1.74574 0.19179 7 0.94313 2.97330 0.70234 2.74831 8 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01422 4.95313 4.95313 1.46634 0.26236 1.74574 0.19179 8 4.00404 3.34991 4.52078 0.06636 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.01422 4.95313 4.95313 1.46634 0.26236 0.42929 1.05259 9 0.12469 3.89097 2.55589 3.95366 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 10 2.09781 4.46439 0.19834 3.08621 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 11 6.25583 5.55893 6.22453 0.00778 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 12 2.89630 1.79389 2.41369 0.37255 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 13 1.90609 1.86279 2.01050 0.57593 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 14 0.14713 3.53662 2.86197 2.98486 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02415 4.97222 4.07862 1.46634 0.26236 1.09861 0.40547 15 0.50059 2.54599 1.81705 1.87779 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.28857 4.96217 1.41194 1.46634 0.26236 1.49154 0.25493 16 2.11828 1.85535 3.01489 0.39406 17 U + - _ 1.38629 1.38629 1.38629 1.38629 0.78157 4.69210 0.62896 1.46634 0.26236 3.64454 0.02648 17 1.44256 1.92949 2.35456 0.64718 18 U + - _ 1.38629 1.38629 1.38629 1.38629 0.94342 2.65968 0.61483 0.77588 0.61674 0.03860 3.27365 18 1.34453 2.33590 1.54555 0.84532 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01744 4.75062 4.75062 1.46634 0.26236 2.75434 0.06577 19 1.34700 2.09495 1.89534 0.76220 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.89689 4.75937 0.53855 1.46634 0.26236 3.42342 0.03314 20 1.75792 1.75185 2.43496 0.56820 23 U + - _ 1.38629 1.38629 1.38629 1.38629 0.42025 1.13025 3.90366 0.86926 0.54345 0.02067 3.88940 21 0.04512 4.54995 4.17646 4.00666 29 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 22 1.38343 2.18462 0.82231 1.62280 30 g = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 23 0.46730 2.56032 1.48965 2.65105 31 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 24 0.01123 6.46064 5.08574 5.67826 32 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 25 4.37434 1.91687 4.22390 0.19153 33 U = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 26 1.36883 1.65302 1.58465 1.05238 34 u + - , 1.38629 1.38629 1.38629 1.38629 0.02281 4.15898 4.97222 0.73143 0.65628 1.09861 0.40547 27 2.72183 0.77689 2.31199 0.97990 36 c = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 28 2.88629 0.84573 2.64445 0.81209 37 u = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 29 0.85621 2.66413 0.84236 2.59194 38 g = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 30 2.81869 4.31032 0.09426 4.08385 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 31 3.04322 0.47662 2.79377 1.30842 40 C = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 32 3.76103 2.53265 4.27167 0.12405 41 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 33 4.17701 3.64813 4.70218 0.05178 42 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 34 4.64948 4.36149 5.21406 0.02816 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 35 4.54859 5.64531 0.02069 5.05730 44 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 36 4.54859 5.64531 0.02069 5.05730 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 37 3.01855 3.36153 0.11146 3.82022 46 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 38 1.01567 2.56373 1.26902 1.27397 47 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 39 1.77565 2.93240 0.35345 2.58895 48 G = - > 1.38629 1.38629 1.38629 1.38629 0.01434 4.97222 4.91859 1.46634 0.26236 1.09861 0.40547 40 4.27643 0.55192 4.11039 0.93175 49 C = - > 1.38629 1.38629 1.38629 1.38629 0.02416 4.07795 4.97184 0.68218 0.70424 1.06318 0.42366 41 2.83317 0.97871 2.51618 0.72441 51 u = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 42 0.97437 2.77171 0.74850 2.44251 52 g = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 43 1.19670 2.45975 0.64840 2.41387 53 G = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 44 1.33225 2.12782 1.30711 1.06010 54 u + - , 1.38629 1.38629 1.38629 1.38629 0.02157 4.97222 4.23962 1.46634 0.26236 1.09861 0.40547 45 1.99859 3.00258 0.26550 3.03676 55 G + - , 1.38629 1.38629 1.38629 1.38629 1.96897 4.96471 0.15850 1.46634 0.26236 1.40622 0.28113 46 1.80805 1.30439 1.07542 1.49819 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 47 1.80284 1.30598 1.07735 1.49715 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 48 1.80038 1.30674 1.07827 1.49666 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 49 1.79926 1.30708 1.07868 1.49643 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 50 1.79880 1.30722 1.07886 1.49634 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 51 1.79867 1.30726 1.07891 1.49631 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 52 1.79869 1.30726 1.07890 1.49631 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.69240 0.07012 53 0.86420 2.05825 1.34973 1.65223 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07023 3.38399 3.38399 1.46634 0.26236 4.76949 0.00852 54 1.78420 1.90990 2.24388 0.54831 64 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07023 3.38399 3.38399 1.46634 0.26236 4.76949 0.00852 55 1.71920 2.41623 0.51801 1.99636 65 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07023 3.38399 3.38399 1.46634 0.26236 4.76949 0.00852 56 1.71920 2.41623 0.51801 1.99636 66 G + - _ 1.38629 1.38629 1.38629 1.38629 0.38826 3.38399 1.24531 1.46634 0.26236 4.76949 0.00852 57 1.72997 1.22033 1.16221 1.53813 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 58 1.72992 1.22035 1.16223 1.53811 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 59 1.72995 1.22034 1.16222 1.53812 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 60 1.73014 1.22026 1.16215 1.53818 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 61 1.73062 1.22005 1.16197 1.53832 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 62 1.73161 1.21963 1.16161 1.53861 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 63 1.73350 1.21882 1.16092 1.53917 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04757 3.06926 64 1.37004 3.73930 0.38076 3.24961 74 G + - , 1.38629 1.38629 1.38629 1.38629 0.08899 2.59113 4.58461 0.18018 1.80255 1.92031 0.15848 65 2.26785 2.06241 3.15736 0.31913 76 U + - , 1.38629 1.38629 1.38629 1.38629 0.01438 4.94228 4.94228 1.46634 0.26236 1.98203 0.14826 66 1.62349 2.84448 0.42243 2.41718 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.01438 4.94228 4.94228 1.46634 0.26236 1.98203 0.14826 67 1.43753 2.68577 0.47466 2.62804 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.01438 4.94228 4.94228 1.46634 0.26236 1.98203 0.14826 68 1.39398 2.85813 0.51032 2.36200 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.05419 4.06862 3.33419 0.69423 0.69207 1.98203 0.14826 69 1.26614 2.75472 0.59077 2.29703 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.12031 4.91336 2.24428 1.46634 0.26236 2.42044 0.09308 70 2.00736 2.08610 0.43089 2.39080 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.08098 2.93674 3.69890 1.11439 0.39767 0.55105 0.85884 71 3.03538 3.09140 2.47372 0.19573 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04327 3.59345 4.20989 0.81809 0.58209 0.57117 0.83210 72 2.57360 2.98898 1.73560 0.36082 90 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02267 4.93799 4.18358 1.46634 0.26236 0.69774 0.68858 73 0.88651 2.27004 2.06595 1.02750 91 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01768 4.95070 4.56169 1.46634 0.26236 0.80783 0.59027 74 0.64507 2.92332 1.26533 1.96987 92 A + - _ 1.38629 1.38629 1.38629 1.38629 0.16635 4.03546 1.99824 0.66463 0.72250 1.12905 0.39059 75 0.17045 3.52547 2.68530 2.82898 94 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05118 4.82632 3.17296 1.46634 0.26236 2.98616 0.05180 76 1.08028 2.40005 1.03390 1.54099 95 g + - _ 1.38629 1.38629 1.38629 1.38629 0.11765 3.64205 2.46751 0.54482 0.86737 2.04385 0.13872 77 2.66317 2.59855 3.01049 0.21490 97 U + - _ 1.38629 1.38629 1.38629 1.38629 0.06728 4.73524 2.87735 1.46634 0.26236 0.61503 0.77788 78 2.56082 0.55223 1.87678 1.63985 98 C = - > 1.38629 1.38629 1.38629 1.38629 0.01640 4.83285 4.79091 1.46634 0.26236 0.60736 0.78699 79 2.84958 0.69661 2.15020 1.11658 99 c = - > 1.38629 1.38629 1.38629 1.38629 0.04032 3.47820 4.75016 0.70810 0.67841 0.86295 0.54804 80 2.65083 0.66151 2.69337 1.06223 102 C = - > 1.38629 1.38629 1.38629 1.38629 0.01441 4.94045 4.94045 1.46634 0.26236 1.85168 0.17076 81 2.55550 0.87962 2.51371 0.85228 103 u = - > 1.38629 1.38629 1.38629 1.38629 0.07079 2.79362 4.94173 0.34517 1.23134 1.91848 0.15880 82 2.93092 0.68228 2.31196 1.07259 106 C = - > 1.38629 1.38629 1.38629 1.38629 0.03435 4.94228 3.62584 1.46634 0.26236 0.32238 1.28889 83 3.02751 0.84156 2.45873 0.83244 107 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01468 4.95313 4.89164 1.46634 0.26236 1.74574 0.19179 84 3.00259 0.97425 2.56148 0.70183 108 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01423 4.95268 4.95268 1.46634 0.26236 1.75675 0.18947 85 2.95269 0.77478 2.44012 0.91667 109 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01423 4.95268 4.95268 1.46634 0.26236 0.44030 1.03239 86 3.38595 0.90733 3.00619 0.66734 110 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01475 4.97178 4.86554 1.46634 0.26236 1.11953 0.39517 87 3.03999 0.79916 2.70049 0.83176 111 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01397 4.97100 4.97100 1.46634 0.26236 1.09398 0.40779 88 4.52811 2.35501 4.00168 0.13236 112 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01396 4.97144 4.97144 1.46634 0.26236 1.02905 0.44215 89 2.96393 3.15175 0.14432 3.21894 113 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 90 0.11813 3.97990 2.59605 4.00824 114 A + - : 1.38629 1.38629 1.38629 1.38629 0.00700 4.96527 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME SerGCT STATES 242 NODES 62 CLEN 76 W 223 ALPH RNA RF yes CONS yes MAP yes DATE Sat Jun 27 19:34:18 2015 COM [1] cmbuild --hand --enone Ser-GCT-final-vert.cm Ser-GCT-2nd-align.sto COM [2] cmcalibrate --seed 208 Ser-GCT-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 434431968 NULL 0.000 0.000 0.000 0.000 EFP7GF -18.2269 0.71821 ECMLC 0.70191 -6.13473 2.31724 1600000 452514 0.002652 ECMGC 0.32242 -26.18255 -11.97919 1600000 38987 0.010260 ECMLI 0.66384 -5.55705 3.17579 1600000 395255 0.003036 ECMGI 0.33436 -22.83640 -9.18095 1600000 38457 0.010401 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 223 412 -15.013 -16.259 -9.326 -0.002 IL 1 1 2 1 4 13 38 225 413 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 38 225 413 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 129 - a - + MR 3 2 3 5 3 13 38 224 412 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 4 2 3 5 3 10 36 221 409 -17.514 -12.691 -0.000 IR 5 5 3 5 3 13 38 224 412 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 128 - a - + MR 6 5 3 8 3 12 37 223 411 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 7 5 3 8 3 10 36 221 409 -17.514 -12.691 -0.000 IR 8 8 3 8 3 12 37 223 412 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 127 - a - + MR 9 8 3 11 3 11 36 222 410 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 10 8 3 11 3 10 36 221 409 -17.514 -0.014 -6.733 IR 11 11 3 11 3 10 33 222 411 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 126 - a - + MR 12 11 3 14 5 13 38 221 409 -15.049 -0.000 -14.864 -15.076 -15.968 0.898 -2.484 0.865 -2.864 D 13 11 3 14 5 6 26 219 407 -8.984 -2.779 -6.610 -0.274 -6.035 IR 14 14 3 14 5 7 27 221 409 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 125 G C = = MP 15 14 3 19 6 14 37 220 408 -15.984 -15.923 -0.000 -14.700 -14.980 -15.375 -10.219 -2.458 -10.057 1.680 -11.205 -10.637 -1.979 -10.722 -10.423 3.445 -10.686 0.306 -2.155 -9.916 -8.280 -9.010 ML 16 14 3 19 6 6 25 217 406 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 8 28 219 407 -10.584 -9.313 -0.083 -9.291 -4.425 -7.505 -2.931 -1.318 -3.676 1.761 D 18 14 3 19 6 4 22 210 399 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 7 26 219 407 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 7 26 219 407 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 124 A U = = MP 21 20 6 25 6 13 35 218 406 -15.996 -6.790 -0.013 -14.712 -14.991 -15.387 -12.038 -3.069 -12.233 3.865 -14.374 -15.529 -9.832 -12.276 -11.793 -0.343 -12.463 -2.926 -1.387 -13.539 -11.663 -10.832 ML 22 20 6 25 6 6 25 216 404 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 6 25 214 403 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 4 22 208 396 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 6 26 217 405 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 8 29 217 405 -5.289 -0.058 -8.800 -6.968 -8.074 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 122 G C = = MP 27 26 6 31 6 13 33 216 404 -15.996 -4.355 -0.072 -14.712 -14.991 -15.387 -4.679 -8.603 -9.783 1.529 -10.914 -4.596 -2.136 -5.682 -10.222 3.610 -5.443 -1.471 -3.961 -3.091 -7.988 -8.749 ML 28 26 6 31 6 6 25 214 403 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 6 24 212 400 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 4 22 206 394 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 6 26 215 403 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 9 30 215 403 -7.557 -0.306 -2.446 -9.236 -10.342 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 120 a u = = MP 33 32 6 37 6 12 31 214 402 -6.657 -15.922 -0.015 -14.698 -14.978 -15.373 2.155 0.213 -2.670 2.226 -1.983 -5.969 -1.259 -9.381 -1.560 1.609 -6.266 -0.149 -1.084 -5.463 -4.021 -8.020 ML 34 32 6 37 6 7 27 214 402 -10.204 -0.095 -5.264 -4.959 -10.400 -7.929 -4.285 -5.824 1.964 -5.018 MR 35 32 6 37 6 6 24 210 398 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 4 21 203 391 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 8 29 213 401 -6.211 -6.474 -0.048 -8.129 -8.905 -8.566 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 8 28 213 401 -5.314 -0.057 -8.825 -6.993 -8.099 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 118 G C = = MP 39 38 6 43 6 11 29 212 400 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -3.158 -1.832 -9.783 2.353 -5.613 -6.015 -1.575 -3.071 -10.221 3.182 -10.467 -1.753 -1.677 -5.461 -2.213 -3.599 ML 40 38 6 43 6 6 24 208 396 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 6 24 207 395 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 3 21 200 388 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 6 25 210 399 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 6 25 210 399 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 117 A U = = MP 45 44 6 49 6 9 27 210 398 -3.854 -15.935 -0.104 -14.712 -14.991 -15.387 -9.965 -4.159 -9.783 3.431 -10.914 -3.405 -4.046 -4.671 -10.222 1.723 -10.468 -2.371 -0.791 -2.432 -4.810 -0.587 ML 46 44 6 49 6 5 23 204 392 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 5 23 203 391 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 3 21 197 385 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 8 26 209 397 -8.927 -2.215 -0.356 -10.845 -11.621 -11.281 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 7 26 209 397 -5.939 -0.037 -9.450 -7.618 -8.724 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 115 G C = = MP 51 50 6 55 3 7 25 208 396 -0.001 -24.440 -11.135 -4.864 -3.190 -2.682 0.569 -10.914 -2.235 -2.781 -10.473 -3.522 3.653 -2.992 -1.892 -1.758 -1.196 -4.086 -8.748 ML 52 50 6 55 3 4 22 196 384 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 3 4 22 196 384 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 54 50 6 55 3 3 21 195 383 -1.585 -1.585 -1.585 IL 55 55 5 55 3 5 23 206 394 -0.141 -7.219 -3.532 0.000 0.000 0.000 0.000 IR 56 56 6 56 2 4 21 74 109 -8.224 -0.005 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 57 56 6 121 58 3 20 73 108 [ BEGR 45 ] - - - - - - S 58 57 1 59 3 0 4 43 75 -16.128 -0.197 -2.967 IL 59 59 2 59 3 1 5 45 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 78 - a - + - ML 60 59 2 62 3 1 4 43 75 -15.931 -1.085 -0.919 0.518 0.491 -1.090 -0.530 D 61 59 2 62 3 0 2 42 74 -14.584 -10.097 -0.001 IL 62 62 3 62 3 1 5 45 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 79 - C - + - ML 63 62 3 65 3 1 4 43 75 -4.814 -0.052 -13.500 0.047 1.045 -8.047 -0.152 D 64 62 3 65 3 0 2 42 74 -16.784 -0.001 -11.176 IL 65 65 3 65 3 1 3 43 75 -4.864 -0.058 -7.565 0.000 0.000 0.000 0.000 [ MATL 48 ] 81 - C - + - ML 66 65 3 68 5 1 5 42 74 -15.062 -0.000 -14.877 -15.089 -15.981 -2.003 1.640 -9.668 -0.659 D 67 65 3 68 5 0 0 40 72 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 42 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 82 113 C G = = MP 69 68 3 73 6 2 5 41 73 -15.996 -1.007 -0.994 -14.712 -14.991 -15.387 -13.048 -13.330 -12.365 -9.567 -10.716 -12.510 3.880 -11.631 -12.469 -9.538 -12.589 -11.734 0.226 -12.882 -3.339 -11.271 ML 70 68 3 73 6 1 1 38 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 39 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 36 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 39 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 39 71 -10.869 -0.001 -14.380 -12.548 -13.653 0.000 0.000 0.000 0.000 [ MATP 50 ] 83 111 c g = = MP 75 74 6 79 6 2 5 38 70 -4.670 -7.332 -0.067 -14.712 -14.991 -15.387 -9.291 -1.547 -9.400 1.541 -1.914 -4.356 2.341 -5.801 -9.366 1.408 -5.786 -5.557 2.001 -9.560 -0.932 -3.039 ML 76 74 6 79 6 1 1 36 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 37 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 34 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 40 72 -1.062 -0.962 -7.240 -10.978 -11.754 -11.414 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 2 36 68 -7.456 -0.013 -10.968 -9.135 -10.241 0.000 0.000 0.000 0.000 [ MATP 51 ] 87 109 u a = = MP 81 80 6 85 6 2 4 35 67 -4.024 -9.426 -0.095 -14.712 -10.521 -15.387 -10.143 -6.948 -10.156 1.952 -6.019 -10.990 1.584 -6.283 -10.051 1.907 -10.562 -3.092 2.186 -5.806 -1.596 -1.613 ML 82 80 6 85 6 1 1 33 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 37 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 33 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 2 35 67 -8.758 -0.187 -3.087 -10.676 -11.452 -11.113 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 2 34 66 -7.750 -0.049 -11.261 -5.180 -10.535 0.000 0.000 0.000 0.000 [ MATP 52 ] 89 107 G C = = MP 87 86 6 91 6 2 3 33 65 -15.993 -15.932 -0.087 -5.815 -4.644 -10.517 -3.576 -0.582 -5.802 1.682 -5.932 -10.376 -1.114 -5.871 -10.218 3.266 -10.464 -3.398 0.772 -9.635 -3.611 -5.686 ML 88 86 6 91 6 1 1 31 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 37 69 -8.967 -7.696 -1.701 -7.675 -0.591 -5.888 1.117 -1.557 -0.010 -1.004 D 90 86 6 91 6 0 0 32 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 33 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 33 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 90 106 G C = = MP 93 92 6 97 4 2 3 24 56 -6.253 -15.337 -0.019 -13.751 -2.781 -1.843 -6.028 0.165 -2.883 -10.291 -0.894 -5.726 -3.839 3.759 -10.380 -5.010 -3.360 -9.550 -7.900 -8.661 ML 94 92 6 97 4 1 1 27 59 -8.202 -8.384 -0.115 -3.837 -5.784 1.976 -6.245 -4.892 MR 95 92 6 97 4 1 1 37 69 -10.859 -0.332 -2.495 -5.177 1.921 -2.526 -5.803 -5.519 D 96 92 6 97 4 0 0 29 62 -5.728 -5.409 -0.632 -1.679 IL 97 97 5 97 4 1 1 29 61 -5.825 -6.509 -0.045 -8.994 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 36 68 -0.828 -1.200 -9.858 0.000 0.000 0.000 0.000 [ MATL 54 ] 92 - U - + - ML 99 98 6 101 3 1 1 17 33 -2.351 -0.315 -14.780 -1.894 -0.971 -6.305 1.682 D 100 98 6 101 3 0 0 16 34 -8.808 -0.170 -3.200 IL 101 101 3 101 3 1 1 16 32 -8.478 -0.005 -11.178 0.000 0.000 0.000 0.000 [ MATL 55 ] 94 - U - + - ML 102 101 3 104 3 1 1 15 31 -16.128 -0.001 -10.500 -4.725 -4.390 -5.964 1.963 D 103 101 3 104 3 0 0 18 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 95 - A - + - ML 105 104 3 107 3 1 1 14 30 -16.127 -0.000 -14.782 1.135 -0.899 -0.459 -0.891 D 106 104 3 107 3 0 0 16 34 -7.627 -0.419 -2.019 IL 107 107 3 107 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 96 - A - + - ML 108 107 3 110 3 1 1 13 28 -5.960 -0.033 -7.269 1.660 -10.368 -0.559 -2.641 D 109 107 3 110 3 0 0 12 30 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 13 28 -4.989 -0.053 -7.689 0.000 0.000 0.000 0.000 [ MATL 58 ] 98 - A - + - ML 111 110 3 113 3 1 1 12 27 -16.119 -0.021 -6.101 1.816 -1.377 -5.331 -3.880 D 112 110 3 113 3 0 0 12 30 -10.352 -0.056 -4.744 IL 113 113 3 113 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 99 - a - + - ML 114 113 3 116 3 1 1 11 23 -4.156 -0.107 -6.017 0.813 0.605 -2.583 -0.850 D 115 113 3 116 3 0 0 7 19 -11.470 -4.407 -0.070 IL 116 116 3 116 3 1 1 12 24 -2.224 -0.350 -9.716 0.000 0.000 0.000 0.000 [ MATL 60 ] 102 - U - + - ML 117 116 3 119 2 1 1 1 1 * 0.000 -1.173 -0.024 -3.096 1.297 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 13 ] - - - - - - S 121 57 1 122 1 0 2 51 86 0.000 [ BIF 14 ] - - - - - - B 122 121 1 123 176 0 2 51 86 [ BEGL 15 ] - - - - - - S 123 122 1 124 4 0 0 43 78 -0.005 -8.930 -9.381 -14.171 [ MATP 16 ] 29 56 A U = = MP 124 123 1 128 6 2 2 43 78 -15.991 -6.049 -0.022 -14.707 -14.987 -15.382 -0.771 -0.623 -2.383 3.244 -8.234 -4.370 -0.811 -2.971 -4.653 1.358 -8.759 -0.716 -0.089 -5.349 -4.448 -3.024 ML 125 123 1 128 6 1 1 42 76 -8.298 -8.644 -0.225 -3.053 -8.494 -6.023 1.756 -2.556 -2.169 -2.117 MR 126 123 1 128 6 1 1 41 76 -8.540 -7.269 -0.378 -7.247 -2.381 -5.461 1.643 -2.063 -1.726 -1.576 D 127 123 1 128 6 0 0 38 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 42 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 42 77 -5.946 -0.037 -9.457 -7.625 -8.730 0.000 0.000 0.000 0.000 [ MATP 17 ] 30 54 A U = = MP 130 129 6 134 6 2 2 41 76 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 1.069 0.646 -4.152 3.017 -10.377 -5.196 -1.333 -3.453 -4.909 0.736 -10.218 0.330 -1.222 -3.897 -7.757 -2.242 ML 131 129 6 134 6 1 1 39 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 39 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 36 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 40 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 40 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 31 53 G C = = MP 136 135 6 140 6 2 2 39 74 -15.996 -4.730 -0.057 -10.020 -14.991 -15.387 -2.398 -0.580 -9.783 1.726 -10.914 -4.240 -5.980 -10.473 -6.602 3.455 -10.468 -2.393 -1.926 -3.296 -3.047 -3.246 ML 137 135 6 140 6 1 1 38 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 37 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 34 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 38 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 38 73 -7.194 -0.015 -10.705 -8.873 -9.979 0.000 0.000 0.000 0.000 [ MATP 19 ] 32 51 A U = = MP 142 141 6 146 6 2 2 37 72 -4.865 -6.235 -0.070 -14.710 -14.990 -15.385 -3.696 -1.018 -9.782 3.204 -5.038 -2.667 -4.136 -3.182 -10.220 1.728 -10.466 -0.004 -0.683 -0.242 -7.986 -3.721 ML 143 141 6 146 6 1 1 37 72 -7.547 -0.743 -2.608 -2.302 -7.743 -5.273 -0.744 -1.810 1.423 -1.197 MR 144 141 6 146 6 1 1 35 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 6 146 6 0 0 32 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 38 73 -7.932 -0.031 -6.113 -9.850 -10.626 -10.286 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 37 72 -1.280 -0.770 -11.814 -9.982 -11.088 0.000 0.000 0.000 0.000 [ MATP 20 ] 34 48 A U = = MP 148 147 6 152 4 2 2 34 69 -15.219 -6.400 -0.017 -13.840 -6.323 1.383 -5.149 3.343 -3.116 -1.021 -2.965 -4.082 -10.222 0.710 -10.468 -1.178 -3.076 -3.193 -7.988 -3.388 ML 149 147 6 152 4 1 1 33 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 4 1 1 33 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 151 147 6 152 4 0 0 31 66 -4.568 -4.250 -2.265 -0.520 IL 152 152 5 152 4 1 1 34 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 153 153 6 153 3 1 1 33 68 -4.590 -0.071 -7.290 0.000 0.000 0.000 0.000 [ MATL 21 ] 35 - C - + - ML 154 153 6 156 3 1 1 32 67 -5.080 -0.043 -14.782 -6.492 1.836 -4.905 -1.371 D 155 153 6 156 3 0 0 30 65 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 34 69 -1.167 -0.855 -9.337 0.000 0.000 0.000 0.000 [ MATL 22 ] 38 - U - + - ML 157 156 3 159 3 1 1 31 66 -16.128 -0.000 -14.782 -12.377 -3.428 -13.426 1.966 D 158 156 3 159 3 0 0 29 64 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 32 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 39 - G - * - ML 160 159 3 162 3 1 1 30 65 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 161 159 3 162 3 0 0 28 63 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 31 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 40 - C - * - ML 163 162 3 165 3 1 1 29 64 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 164 162 3 165 3 0 0 27 62 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 30 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 41 - U - * - ML 166 165 3 168 3 1 1 28 63 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 167 165 3 168 3 0 0 26 61 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 29 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 42 - A - + - ML 169 168 3 171 3 1 1 27 62 -4.497 -0.065 -14.782 2.000 -12.067 -11.313 -11.400 D 170 168 3 171 3 0 0 24 59 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 32 67 -0.761 -1.290 -10.341 0.000 0.000 0.000 0.000 [ MATL 27 ] 46 - A - + - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.846 -2.635 -2.898 -3.182 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 176 122 1 177 3 0 0 27 46 -16.128 -0.000 -14.782 IL 177 177 2 177 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 57 - g - + - ML 178 177 2 180 3 1 1 27 46 -16.128 -0.000 -14.782 0.407 -0.599 0.523 -0.794 D 179 177 2 180 3 0 0 29 48 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 58 - c - + - ML 181 180 3 183 5 1 1 26 45 -15.062 -8.886 -14.877 -5.084 -0.046 0.085 0.900 -2.060 -0.263 D 182 180 3 183 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 59 77 g c = = MP 184 183 3 188 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 185 183 3 188 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 29 47 -12.350 -11.079 -0.024 -11.057 -6.191 -9.271 -6.512 1.986 -6.963 -5.601 D 187 183 3 188 6 0 0 19 38 -19.967 -18.665 -14.462 -15.144 -15.162 -0.000 IL 188 188 5 188 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 60 76 G C = = MP 190 189 6 194 6 2 2 28 46 -11.200 -11.140 -2.458 -9.916 -10.196 -0.295 -9.055 -5.769 -11.024 -3.211 -10.650 -6.956 -5.034 -10.608 -7.131 3.973 -7.333 -3.686 -5.400 -7.413 -7.456 -9.971 ML 191 189 6 194 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 18 37 -19.967 -18.665 -14.462 -15.144 -15.162 -0.000 IL 194 194 5 194 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 61 75 g c = = MP 196 195 6 200 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 197 195 6 200 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 16 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 200 200 5 200 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 62 74 g c = = MP 202 201 6 206 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 203 201 6 206 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 14 33 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 206 206 5 206 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 63 73 g c = = MP 208 207 6 212 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 209 207 6 212 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 211 207 6 212 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 212 212 5 212 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 64 72 g c = = MP 214 213 6 218 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 215 213 6 218 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 216 213 6 218 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 217 213 6 218 6 0 0 12 30 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 218 218 5 218 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 219 219 6 219 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 65 71 g c = = MP 220 219 6 224 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 221 219 6 224 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 222 219 6 224 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 223 219 6 224 4 0 0 12 30 -15.432 -15.113 -4.353 -0.072 IL 224 224 5 224 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 225 225 6 225 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 66 - G - + - ML 226 225 6 228 3 1 1 14 33 -11.820 -0.091 -4.040 -0.882 -4.492 1.330 -0.154 D 227 225 6 228 3 0 0 8 27 -17.473 -9.898 -0.002 IL 228 228 3 228 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 67 - C - + - ML 229 228 3 231 3 1 1 13 32 -11.757 -0.028 -5.725 -3.875 1.084 -0.964 0.378 D 230 228 3 231 3 0 0 7 26 -17.476 -12.989 -0.000 IL 231 231 3 231 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 68 - A - + - ML 232 231 3 234 3 1 1 12 31 -11.731 -4.834 -0.052 1.674 -1.467 -4.902 -1.273 D 233 231 3 234 3 0 0 7 25 -17.478 -12.991 -0.000 IL 234 234 3 234 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 69 - a - + - ML 235 234 3 237 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 236 234 3 237 3 0 0 5 24 -17.545 -2.502 -0.280 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 70 - c - + - ML 238 237 3 240 2 1 1 1 1 * 0.000 -0.179 0.876 -1.010 -0.351 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME SerGCT LENG 76 MAXL 222 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sat Jun 27 19:34:18 2015 COM [1] cmbuild --hand --enone Ser-GCT-final-vert.cm Ser-GCT-2nd-align.sto NSEQ 1086 EFFN 645.736328 CKSUM 434431968 STATS LOCAL MSV -8.7656 0.71821 STATS LOCAL VITERBI -8.9694 0.71821 STATS LOCAL FORWARD -3.5581 0.71821 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29727 1.35073 1.53110 1.38081 1.38629 1.38629 1.38629 1.38629 0.00877 8.06928 4.77733 1.46634 0.26236 0.00000 * 1 1.55208 4.09867 0.27919 4.18643 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06115 8.06115 1.46634 0.26236 0.07173 2.67053 2 0.08578 8.60624 2.84819 3.72667 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 3 1.69678 3.97831 0.24154 4.37488 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 4 0.44105 3.12690 1.28589 3.31371 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01048 4.59415 8.06928 0.06081 2.83033 1.09861 0.40547 5 1.07032 3.46451 0.53532 3.21065 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 6 0.39425 4.34947 1.50937 2.38757 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.07232 2.66704 8.06928 0.00899 4.71629 1.09861 0.40547 7 2.18712 3.76756 0.20522 2.99206 9 G = - ( 1.38629 1.38629 1.38629 1.38629 5.07355 0.00659 8.06928 2.37330 0.09780 1.09861 0.40547 8 0.39039 3.02430 1.60105 2.61829 29 A = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 9 0.30915 3.40546 1.67583 3.08823 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 10 1.34638 5.26719 0.36095 3.27952 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 11 0.49739 3.77760 1.30198 2.33287 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03551 3.36458 8.06928 0.01801 4.02594 1.09861 0.40547 12 0.22895 2.99255 2.01628 3.84801 34 A = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 13 5.81278 0.11414 4.77383 2.33898 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03048 3.51652 8.06928 0.60228 0.79311 1.09861 0.40547 14 9.19498 3.75961 9.85889 0.02373 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 15 8.25252 9.47462 0.00049 8.77371 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 16 9.56558 0.00031 10.10849 8.52445 40 C * - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 17 10.14386 9.19922 11.21987 0.00015 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 18 0.00041 9.24161 8.71528 8.78029 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04568 3.11583 8.06928 0.90305 0.51975 1.09861 0.40547 19 0.10758 3.20748 3.39019 3.58163 46 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01245 4.41752 8.06928 0.05111 2.99929 1.09861 0.40547 20 4.12587 1.18980 4.50956 0.40262 48 U = - > 1.38629 1.38629 1.38629 1.38629 0.05030 3.02117 8.06928 0.53181 0.88562 1.09861 0.40547 21 3.07545 1.19699 5.31875 0.43567 51 U = - > 1.38629 1.38629 1.38629 1.38629 0.03905 3.27069 8.06928 0.01640 4.11855 1.09861 0.40547 22 3.52178 0.30772 4.64518 1.48844 53 C = - > 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 23 1.83313 1.56295 3.50974 0.50972 54 U = - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.17702 6.07360 0.04031 3.23123 1.09861 0.40547 24 2.30105 1.58119 2.93920 0.44440 56 U = - > 1.38629 1.38629 1.38629 1.38629 0.00063 8.06729 8.06729 1.46634 0.26236 0.24047 1.54300 25 1.10486 1.80095 1.02585 1.93027 57 g + - , 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 26 1.32722 0.76463 2.80670 1.56602 58 c + - , 1.38629 1.38629 1.38629 1.38629 5.07355 8.06928 0.00659 1.46634 0.26236 1.09861 0.40547 27 1.80314 1.30589 1.07724 1.49721 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51281 0.03027 28 4.31033 5.39853 0.02271 5.40377 60 G = - < 1.38629 1.38629 1.38629 1.38629 1.75510 4.75083 0.20032 1.46634 0.26236 8.03338 0.00032 29 1.80231 1.30614 1.07755 1.49704 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 30 1.80052 1.30669 1.07821 1.49668 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 31 1.79992 1.30688 1.07844 1.49656 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 32 1.79980 1.30692 1.07849 1.49654 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 33 1.79984 1.30690 1.07847 1.49655 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.01364 0.05036 34 1.96083 3.98326 0.47547 1.51851 66 G + - _ 1.38629 1.38629 1.38629 1.38629 0.06802 5.17600 2.81167 1.46634 0.26236 6.68055 0.00126 35 3.52919 0.65208 2.07587 1.12621 67 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02857 5.13655 3.80381 1.46634 0.26236 8.01556 0.00033 36 0.23754 2.38616 4.26523 2.24997 68 A + - _ 1.38629 1.38629 1.38629 1.38629 2.12427 5.12000 0.13410 1.46634 0.26236 8.01648 0.00033 37 1.13112 1.65303 1.51838 1.32128 69 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 1.73366 0.19436 38 1.50332 0.79186 2.07747 1.61264 70 c + - _ 1.38629 1.38629 1.38629 1.38629 3.37068 6.36641 0.03675 1.46634 0.26236 7.86934 0.00038 39 1.72883 1.22082 1.16263 1.53779 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 40 1.72683 1.22168 1.16336 1.53720 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 41 1.72331 1.22320 1.16465 1.53616 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 42 1.71707 1.22590 1.16696 1.53430 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 8.06332 0.00031 43 1.70605 1.23075 1.17109 1.53100 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51281 0.03027 44 4.57929 0.04340 4.72314 3.75849 76 C = - > 1.38629 1.38629 1.38629 1.38629 0.01744 4.75083 4.75083 1.46634 0.26236 8.03338 0.00032 45 3.76071 0.09664 3.27790 3.46907 77 C = - > 1.38629 1.38629 1.38629 1.38629 1.75510 4.75083 0.20032 1.46634 0.26236 0.10769 2.28182 46 1.02843 1.04843 2.13822 1.74824 78 a + - , 1.38629 1.38629 1.38629 1.38629 0.74713 7.93324 0.64261 1.46634 0.26236 6.01460 0.00245 47 1.35739 0.66292 6.42295 1.48854 79 C + - , 1.38629 1.38629 1.38629 1.38629 0.03727 3.32914 7.18763 0.04168 3.19854 0.00107 6.84314 48 2.77144 0.25061 7.53797 1.84154 81 C + - , 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 49 8.46262 0.08344 8.38565 2.53057 82 C = - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 50 1.59271 1.08742 1.77938 1.23513 83 c = - < 1.38629 1.38629 1.38629 1.38629 0.04071 3.22941 8.06928 0.66481 0.72231 1.09861 0.40547 51 1.41911 1.66037 1.42080 1.11938 87 u = - < 1.38629 1.38629 1.38629 1.38629 0.06315 2.80954 6.94588 0.01036 4.57488 1.09861 0.40547 52 1.39242 3.45491 0.49978 2.17794 89 G = - < 1.38629 1.38629 1.38629 1.38629 0.04362 8.06863 3.16132 1.46634 0.26236 0.50098 0.93124 53 2.33615 2.79474 0.18083 4.88088 90 G = - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.33562 6.47487 0.04918 3.03673 0.03348 3.41348 54 2.69814 2.06044 5.69092 0.22078 92 U + - _ 1.38629 1.38629 1.38629 1.38629 0.21760 1.63352 8.06733 0.00321 5.74322 0.24397 1.53023 55 4.62832 4.40064 5.47068 0.02660 94 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00128 8.06928 6.94356 1.46634 0.26236 1.09861 0.40547 56 0.60142 2.00729 1.70421 1.99731 95 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.06863 8.06863 1.46634 0.26236 0.50007 0.93264 57 0.23608 7.96836 1.77308 3.21575 96 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02327 4.11794 5.00166 0.03802 3.28850 1.09861 0.40547 58 0.12789 2.34061 5.04062 4.05624 98 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01520 8.06285 4.21525 1.46634 0.26236 0.08898 2.46346 59 0.82404 0.96861 3.16340 1.97003 99 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07446 2.88041 4.15750 0.24494 1.52672 2.84284 0.06003 60 2.19648 1.40334 3.52043 0.48867 102 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05536 3.36274 3.95209 0.84258 0.56317 0.02121 3.86391 61 2.70437 0.19055 3.36875 2.62901 106 C = - > 1.38629 1.38629 1.38629 1.38629 0.00064 8.05077 8.05077 1.46634 0.26236 0.03300 3.42773 62 2.17258 0.44535 3.31509 1.56452 107 C = - > 1.38629 1.38629 1.38629 1.38629 0.05833 2.87618 8.06929 0.01107 4.50881 1.09861 0.40547 63 1.25450 1.44580 1.56408 1.30954 109 a = - > 1.38629 1.38629 1.38629 1.38629 0.04718 3.08415 8.06928 0.01362 4.30287 1.09861 0.40547 64 1.32119 1.65940 1.04793 1.64888 111 g = - > 1.38629 1.38629 1.38629 1.38629 0.68957 0.69737 8.06928 0.00126 6.67977 1.09861 0.40547 65 2.61213 8.45753 0.07675 8.16210 113 G = - > 1.38629 1.38629 1.38629 1.38629 0.07486 2.63374 8.06929 0.00870 4.74935 1.09861 0.40547 66 3.62300 0.18497 3.46877 2.19811 115 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01571 4.18178 8.06928 0.04050 3.22663 1.09861 0.40547 67 3.30270 1.47251 4.95057 0.31912 117 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 68 3.55857 0.53378 3.34325 1.05035 118 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 69 1.06955 1.32339 3.16469 1.05446 120 u = - ) 1.38629 1.38629 1.38629 1.38629 0.05073 3.01277 8.06928 0.01269 4.37351 1.09861 0.40547 70 4.91706 0.26014 4.08143 1.58547 122 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00969 4.67439 8.06928 0.06579 2.75403 1.09861 0.40547 71 3.72248 2.86391 8.02340 0.08506 124 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00063 8.06928 8.06928 1.46634 0.26236 1.09861 0.40547 72 4.20090 0.37647 4.07337 1.26685 125 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00878 8.06834 4.77638 1.46634 0.26236 1.09861 0.40547 73 0.76533 3.10327 0.78700 3.36076 126 a + - : 1.38629 1.38629 1.38629 1.38629 4.74927 7.74500 0.00913 1.46634 0.26236 3.36368 0.03522 74 1.13112 1.65303 1.51838 1.32128 127 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 7.74798 0.00043 75 1.13112 1.65303 1.51838 1.32128 128 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 7.74798 0.00043 76 1.13112 1.65303 1.51838 1.32128 129 a + - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.04452 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME SerTGA STATES 289 NODES 76 CLEN 90 W 103 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:59 2015 COM [1] cmbuild --hand --enone Ser-TGA-final-vert.cm ../Ser-TGA-2nd-align.sto COM [2] cmcalibrate --seed 208 Ser-TGA-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 3239661816 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8102 0.71866 ECMLC 0.64047 -8.11089 1.91347 1600000 736994 0.001628 ECMGC 0.29998 -49.45397 -33.66675 1600000 45587 0.008774 ECMLI 0.63202 -7.89077 2.19392 1600000 703492 0.001706 ECMGI 0.31457 -45.33135 -30.35719 1600000 44441 0.009001 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 103 132 -15.013 -16.259 -0.001 -10.874 IL 1 1 2 1 4 19 42 104 133 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 43 105 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - G - + MR 3 2 3 5 5 25 50 103 132 -15.061 -0.013 -14.877 -6.861 -15.981 -1.099 -11.034 1.799 -4.221 D 4 2 3 5 5 16 38 101 130 -5.918 -1.273 -3.544 -1.489 -2.970 IR 5 5 3 5 5 18 41 103 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 a u = = MP 6 5 3 10 6 26 49 102 131 -15.983 -15.922 -0.000 -14.699 -14.979 -15.374 -3.799 2.155 -2.878 2.308 -14.361 -15.515 -9.819 -12.263 -11.780 0.981 -3.710 2.115 -9.744 -13.525 -11.650 -10.818 ML 7 5 3 10 6 17 39 101 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 42 100 129 -10.710 -9.439 -3.962 -9.417 -0.109 -7.631 -4.282 -3.901 -5.085 1.946 D 9 5 3 10 6 14 36 98 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 40 102 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 41 102 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 A U = = MP 12 11 6 16 6 25 47 100 129 -15.984 -15.923 -0.000 -14.699 -14.979 -15.374 -12.026 -10.686 -12.221 3.918 -14.361 -15.516 -9.819 -12.263 -11.781 -7.347 -12.451 -0.194 -9.744 -13.526 -11.650 -10.819 ML 13 11 6 16 6 17 39 99 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 42 99 128 -10.652 -9.381 -0.079 -9.359 -4.493 -7.572 -4.754 1.951 -5.316 -3.834 D 15 11 6 16 6 14 35 96 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 40 100 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 40 99 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 G C = = MP 18 17 6 22 6 23 45 98 127 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.967 -10.551 -16.490 -0.556 -15.578 -3.115 -9.855 -15.856 -11.923 3.926 -12.111 -8.491 -10.225 -12.174 -12.314 -15.697 ML 19 17 6 22 6 17 39 97 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 38 96 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 35 94 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 40 98 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 40 97 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 A U = = MP 24 23 6 28 6 21 43 96 125 -6.031 -15.935 -0.022 -14.712 -14.991 -15.387 -12.038 -3.344 -12.233 3.743 -14.374 -15.529 -9.832 -12.276 -11.793 0.116 -12.463 0.151 -3.522 -13.539 -11.663 -2.120 ML 25 23 6 28 6 17 38 95 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 38 94 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 35 92 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 20 42 95 124 -6.809 -7.072 -0.032 -8.728 -9.504 -9.164 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 39 95 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 96 A U = = MP 30 29 6 34 6 19 41 94 123 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.035 -5.189 -3.808 3.733 -14.365 -15.501 -9.820 -12.274 -11.792 -0.013 -12.461 0.192 -2.762 -13.527 -2.023 -3.796 ML 31 29 6 34 6 16 38 93 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 38 93 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 35 90 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 39 94 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 39 93 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 95 A U = = MP 36 35 6 40 6 17 39 92 121 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.027 -10.688 -5.940 3.679 -14.294 -15.374 -2.058 -12.264 -11.787 0.760 -12.452 0.176 -9.702 -13.482 -4.470 -4.066 ML 37 35 6 40 6 16 37 91 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 37 91 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 35 89 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 38 92 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 38 92 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 94 G C = = MP 42 41 6 46 4 16 37 90 119 -15.219 -15.426 -0.346 -2.229 -9.967 -8.606 -9.786 0.829 -10.917 -10.382 -2.638 -10.476 -4.572 3.709 -4.293 -1.237 -1.351 -5.198 -7.991 -4.658 ML 43 41 6 46 4 15 36 90 119 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 36 89 118 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 34 88 117 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 37 91 120 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 37 91 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 14 36 89 117 -15.783 -0.000 -14.437 0.613 -3.947 -2.286 1.138 D 49 47 6 50 3 12 34 87 115 -15.320 -4.840 -0.051 IL 50 50 3 50 3 14 36 90 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 13 35 88 116 -16.451 -0.000 0.878 -4.821 1.053 -4.272 D 52 50 3 53 2 12 34 87 115 -13.530 -0.000 IL 53 53 3 53 2 14 35 88 117 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 34 87 115 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 57 86 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 57 86 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 39 68 -0.014 -14.123 -6.742 -14.171 [ MATP 15 ] 11 33 g c = = MP 58 57 1 62 6 2 3 39 68 -15.983 -15.922 -0.000 -14.698 -14.978 -15.373 -0.095 -4.817 -0.644 1.688 -3.474 -10.365 -5.966 -10.460 -3.766 2.799 -5.588 1.148 -2.154 -6.963 0.508 -2.921 ML 59 57 1 62 6 1 1 37 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 37 66 -10.758 -9.487 -5.395 -9.465 -0.047 -7.678 0.940 -3.559 0.915 -3.162 D 61 57 1 62 6 0 0 34 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 38 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 38 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 32 C G = = MP 64 63 6 68 6 2 3 37 66 -15.983 -15.922 -0.008 -14.698 -7.537 -15.373 -13.035 -13.317 -12.352 -9.553 -5.253 -12.496 3.883 -11.618 -12.456 -9.525 -12.576 -11.721 -0.296 -12.869 -1.319 -11.257 ML 65 63 6 68 6 1 1 35 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 36 65 -10.758 -9.487 -0.073 -9.465 -4.599 -7.678 0.880 -2.104 -2.302 0.786 D 67 63 6 68 6 0 0 32 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 36 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 36 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 31 A U = = MP 70 69 6 74 6 2 3 35 64 -15.988 -15.928 -0.000 -14.704 -14.984 -15.379 -4.033 -4.014 -3.550 3.938 -14.367 -15.522 -9.825 -12.268 -11.786 -3.070 -12.456 -2.199 -9.749 -13.531 -11.655 -2.996 ML 71 69 6 74 6 1 1 34 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 33 62 -10.034 -8.763 -4.671 -8.741 -0.078 -6.954 -3.966 1.917 -4.659 -3.046 D 73 69 6 74 6 0 0 31 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 34 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 34 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 30 u a = = MP 76 75 6 80 4 2 3 33 62 -15.211 -15.418 -0.000 -13.832 -3.001 -12.808 -12.277 -9.008 -10.734 -12.533 -1.580 -11.592 2.565 -2.098 -4.137 -1.072 2.938 -12.803 -0.148 -1.808 ML 77 75 6 80 4 1 1 32 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 32 61 -8.037 -7.066 -0.111 -3.994 1.932 -4.310 -3.786 -4.023 D 79 75 6 80 4 0 0 30 59 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 33 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 33 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 31 60 -16.128 -0.005 -8.263 1.661 -9.872 -1.376 -1.149 D 83 81 6 84 3 0 0 29 57 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 32 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - + - ML 85 84 3 87 3 1 1 30 59 -16.124 -0.058 -4.668 0.704 -4.799 1.040 -1.843 D 86 84 3 87 3 0 0 27 55 -9.428 -4.941 -0.050 IL 87 87 3 87 3 1 1 31 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 29 58 -16.066 -2.565 -0.267 -0.269 -1.657 -0.672 1.154 D 89 87 3 90 3 0 0 26 55 -13.000 -8.513 -0.004 IL 90 90 3 90 3 1 1 32 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 30 59 -1.416 -0.678 -12.156 -1.207 -2.036 -1.505 1.571 D 92 90 3 93 3 0 0 26 55 -17.293 -0.090 -4.048 IL 93 93 3 93 3 1 1 31 59 -1.019 -0.983 -10.482 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - + - ML 94 93 3 96 3 1 1 26 55 -16.054 -0.007 -7.641 -2.142 -3.584 1.883 -10.656 D 95 93 3 96 3 0 0 22 51 -13.248 -2.789 -0.226 IL 96 96 3 96 3 1 1 27 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - + - ML 97 96 3 99 3 1 1 25 54 -16.058 -0.111 -3.757 -2.103 -11.599 1.894 -4.280 D 98 96 3 99 3 0 0 15 44 -13.175 -8.688 -0.004 IL 99 99 3 99 3 1 1 27 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 25 53 -2.808 -0.222 -14.601 -2.360 -1.142 -4.097 1.720 D 101 99 3 102 3 0 0 11 40 -14.472 -0.003 -8.864 IL 102 102 3 102 3 1 1 27 55 -0.928 -1.076 -11.618 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 -1.657 -2.230 -1.019 1.574 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.000 -14.782 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - G - + - ML 109 108 2 111 5 1 1 26 45 -15.062 -0.001 -14.877 -10.858 -15.981 -0.606 -3.833 1.560 -1.628 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 35 52 g c = = MP 112 111 3 116 6 2 2 25 44 -15.995 -6.216 -0.020 -14.711 -14.991 -15.386 -4.458 -4.376 -3.331 1.722 -4.499 -4.778 -1.859 -2.753 -1.209 2.620 -10.391 2.266 -1.494 -6.320 -3.176 -2.873 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -7.749 -6.478 -2.387 -6.456 -0.430 -4.670 -0.402 -0.632 -1.046 1.080 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 24 43 -5.798 -0.041 -9.309 -7.477 -8.582 0.000 0.000 0.000 0.000 [ MATP 31 ] 36 50 u a = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -10.305 -10.006 -10.304 -1.921 -4.357 -11.146 2.343 -5.351 -10.162 -3.357 -10.675 -5.147 2.623 -4.843 1.849 -0.595 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -7.749 -6.478 -2.387 -6.456 -0.430 -4.670 1.233 -1.148 -0.890 -0.603 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 37 49 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -13.047 -13.329 -12.365 -9.566 -10.715 -12.509 -0.430 -11.630 -12.468 -9.538 -3.670 -11.733 3.843 -12.881 -0.630 -2.526 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -7.749 -6.478 -2.387 -6.456 -0.430 -4.670 1.233 -1.148 -0.890 -0.603 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 48 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.711 -14.991 -15.386 -12.069 -10.689 -12.274 1.208 -14.390 -14.980 -9.818 -12.317 -2.947 3.557 -12.446 0.723 -9.758 -13.450 -11.667 -2.893 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 41 -7.749 -6.478 -0.734 -6.456 -1.590 -4.670 -0.381 0.877 -1.113 -0.099 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 39 47 G C = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -12.411 -6.047 -12.721 1.903 -14.442 -4.258 -9.541 -12.809 -11.792 3.561 -12.253 -1.695 -9.657 -12.657 -11.576 -3.661 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.128 -0.000 -14.782 -11.944 1.825 -12.518 -1.131 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -10.653 -12.411 2.000 -11.400 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.975 -5.086 -5.951 -5.405 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 47 65 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 3 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 53 - u - + - ML 166 165 2 168 3 1 2 47 65 -16.128 -0.082 -4.175 0.582 -1.559 -1.402 0.836 D 167 165 2 168 3 0 1 46 64 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 54 - U - + - ML 169 168 3 171 2 1 1 46 64 -16.702 -0.000 -1.015 -1.521 -0.048 1.130 D 170 168 3 171 2 0 0 45 63 -11.745 -0.000 IL 171 171 3 171 2 1 2 47 65 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 45 63 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 44 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 55 72 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 38 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 56 71 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 36 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 57 70 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 58 69 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 59 68 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 60 67 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 11 30 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 61 66 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 29 -15.432 -15.113 -4.820 -0.052 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - U - + - ML 216 215 6 218 3 1 1 13 32 -11.370 -0.002 -10.025 -7.188 -6.494 -8.140 1.992 D 217 215 6 218 3 0 0 7 26 -17.493 -13.006 -0.000 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.370 -0.002 -10.025 -7.188 -6.494 -8.140 1.992 D 220 218 3 221 3 0 0 6 25 -17.493 -13.006 -0.000 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.370 -4.474 -0.067 -7.188 -6.494 -8.140 1.992 D 223 221 3 224 3 0 0 5 24 -17.493 -13.006 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 27 46 -16.128 -0.000 -14.782 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 73 - A - + - ML 231 230 2 233 3 1 1 27 46 -4.495 -0.065 -14.782 1.358 -2.640 -0.818 -0.495 D 232 230 2 233 3 0 0 26 44 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 27 45 -6.374 -0.020 -9.074 0.000 0.000 0.000 0.000 [ MATL 62 ] 75 - U - + - ML 234 233 3 236 5 1 1 26 44 -15.062 -0.000 -14.877 -15.089 -15.981 0.200 -1.025 -3.163 1.169 D 235 233 3 236 5 0 0 26 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 76 93 G C = = MP 237 236 3 241 6 2 2 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.821 -10.557 -15.736 -2.770 -15.509 -11.754 -9.854 -15.355 -11.918 3.977 -12.123 -3.214 -10.204 -12.208 -12.283 -14.649 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 77 92 G U = = MP 243 242 6 247 6 2 2 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.730 -5.246 -11.820 1.290 -13.573 -13.696 -8.833 -12.031 -3.812 2.018 -12.174 3.174 -2.237 -3.318 -10.756 -3.906 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 78 91 G U = = MP 249 248 6 253 6 2 2 21 39 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -9.968 -5.530 -9.792 0.371 -10.805 -5.654 0.257 -10.443 -1.397 1.455 -10.469 3.192 -0.617 -2.383 -1.563 -5.405 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 79 90 G C = = MP 255 254 6 259 6 2 2 19 37 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.590 -10.566 -14.942 0.148 -15.391 -11.852 -9.853 -14.742 -11.909 3.878 -12.145 -2.410 -10.167 -12.271 -12.229 -13.700 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 80 89 G C = = MP 261 260 6 265 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -13.126 -2.950 -13.881 -7.671 -15.127 -12.140 -9.849 -13.825 -11.885 3.951 -12.202 -3.515 -10.077 -12.447 -12.099 -1.701 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 81 - U - + - ML 267 266 6 269 3 1 1 14 32 -16.128 -0.000 -14.782 -3.127 -3.507 -9.742 1.925 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - U - + - ML 270 269 3 272 3 1 1 13 31 -16.128 -0.000 -14.782 -9.274 -4.912 -5.060 1.976 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - C - + - ML 273 272 3 275 3 1 1 11 30 -16.128 -0.000 -14.782 -2.358 1.847 -10.362 -2.280 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - G - + - ML 276 275 3 278 3 1 1 10 29 -16.128 -0.000 -14.782 0.929 -10.841 1.048 -5.139 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.128 -0.000 -14.782 1.964 -11.345 -3.909 -5.014 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - U - + - ML 282 281 3 284 3 1 1 6 11 -6.018 -0.048 -5.839 -1.795 -1.072 -1.812 1.562 D 283 281 3 284 3 0 0 5 10 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 6 12 -4.936 -0.055 -7.636 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.034 -4.211 -3.859 1.932 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME SerTGA LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:59 2015 COM [1] cmbuild --hand --enone Ser-TGA-final-vert.cm ../Ser-TGA-2nd-align.sto NSEQ 1086 EFFN 6.450279 CKSUM 3239661816 STATS LOCAL MSV -8.9817 0.71866 STATS LOCAL VITERBI -9.5818 0.71866 STATS LOCAL FORWARD -3.7207 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41419 1.59019 1.30544 1.26607 1.38629 1.38629 1.38629 1.38629 0.02978 4.48290 4.01508 1.46634 0.26236 0.00000 * 1 0.99827 2.39477 0.83829 2.22712 1 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02302 4.47614 4.47614 1.46634 0.26236 1.25473 0.33569 2 0.14207 4.38035 2.27761 4.05209 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02301 4.47643 4.47643 1.46634 0.26236 0.82115 0.57969 3 2.78770 3.82624 0.10932 3.90178 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 4 0.37680 3.40719 1.48218 2.92490 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03476 3.77846 4.48290 0.80312 0.59408 1.09861 0.40547 5 0.54902 2.68773 1.33342 2.39826 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 6 0.54449 2.81245 1.21768 2.75062 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 7 1.74193 2.60896 0.41588 2.39199 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.20219 4.48290 1.76167 1.46634 0.26236 1.09861 0.40547 8 1.10976 2.15210 2.12946 0.83190 9 u + - , 1.38629 1.38629 1.38629 1.38629 0.02729 4.30801 4.30801 1.46634 0.26236 2.44684 0.09054 9 0.88586 2.73387 0.85151 2.34443 10 g + - , 1.38629 1.38629 1.38629 1.38629 0.03564 4.31457 3.83322 1.46634 0.26236 0.12748 2.12287 10 1.40718 1.89285 0.94760 1.52852 11 g = - < 1.38629 1.38629 1.38629 1.38629 0.02302 4.47589 4.47589 1.46634 0.26236 1.28599 0.32348 11 3.75002 0.21092 3.57580 1.97578 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02717 4.47589 4.17207 1.46634 0.26236 0.80464 0.59285 12 0.03142 5.16204 4.03773 4.88441 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.02295 4.47888 4.47888 1.46634 0.26236 1.21046 0.35391 13 1.90411 1.64582 1.27687 0.96948 14 u = - < 1.38629 1.38629 1.38629 1.38629 0.02295 4.47888 4.47888 1.46634 0.26236 0.90663 0.51731 14 0.40162 2.74023 2.11371 1.92814 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02534 4.48290 4.28858 1.46634 0.26236 1.09861 0.40547 15 1.02136 2.61209 0.84765 1.97983 16 g + - _ 1.38629 1.38629 1.38629 1.38629 0.05362 4.48048 3.19721 1.46634 0.26236 1.16767 0.37265 16 1.38596 1.94861 1.78896 0.82027 17 u + - _ 1.38629 1.38629 1.38629 1.38629 1.02724 4.45048 0.46151 1.46634 0.26236 1.76180 0.18842 17 1.46294 1.73703 1.90054 0.81438 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.20446 1.86882 3.48642 0.82619 0.57574 0.09552 2.39576 18 2.37441 3.25237 0.18998 3.18762 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02756 4.44421 4.17079 1.46634 0.26236 1.45668 0.26528 19 2.53656 3.81649 0.14888 3.29182 23 G + - _ 1.38629 1.38629 1.38629 1.38629 0.08163 4.44617 2.70805 1.46634 0.26236 1.82321 0.17615 20 2.24764 1.99882 2.86942 0.35364 24 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13788 2.15081 4.38966 0.81524 0.58436 0.20316 1.69363 21 1.89733 2.18364 2.06662 0.49301 29 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 22 0.85546 1.98927 1.38435 1.67327 30 a = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 23 4.95405 4.29142 4.86695 0.02885 31 U = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 24 2.28221 3.69980 0.17203 3.46535 32 G = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 25 1.75636 1.14907 1.50964 1.23992 33 c = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 26 1.65545 2.71438 0.47750 2.10034 34 G + - , 1.38629 1.38629 1.38629 1.38629 0.02325 4.48290 4.44949 1.46634 0.26236 1.09861 0.40547 27 1.52649 2.08371 0.67913 1.88932 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.10988 0.39988 28 2.20232 1.14819 2.04710 0.81388 36 u = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.10988 0.39988 29 3.24786 2.01137 2.98251 0.25274 37 U = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.10988 0.39988 30 1.67230 2.76523 0.39726 2.56308 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48252 4.48252 1.46634 0.26236 1.07646 0.41673 31 1.51615 2.67833 0.45950 2.52362 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 32 3.33798 0.20634 3.95751 2.02629 40 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 33 3.84144 3.62483 4.38802 0.06245 41 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 34 3.84144 3.62483 4.38802 0.06245 42 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 35 3.89152 4.89649 0.04094 4.40404 43 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 36 0.04115 4.50924 4.14005 4.31364 44 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 37 0.04115 4.50924 4.14005 4.31364 45 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 38 0.07946 3.76977 3.59678 3.65303 46 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 39 2.81563 0.52928 2.50461 1.31158 47 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 40 2.81820 0.52784 2.57233 1.29444 48 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 41 0.31426 3.19995 1.74515 2.91347 49 A = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 42 1.19093 2.21865 0.83130 1.88505 50 g = - > 1.38629 1.38629 1.38629 1.38629 0.03331 3.84155 4.48290 0.84766 0.55934 1.09861 0.40547 43 2.06457 0.98936 1.89746 1.04594 52 c = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 44 1.09144 1.92927 1.95589 0.97399 53 u + - , 1.38629 1.38629 1.38629 1.38629 0.06640 4.48290 2.93858 1.46634 0.26236 1.09861 0.40547 45 1.55482 1.92987 1.57460 0.82893 54 u + - , 1.38629 1.38629 1.38629 1.38629 1.44464 4.44037 0.28452 1.46634 0.26236 1.89984 0.16204 46 1.80805 1.30439 1.07542 1.49819 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 47 1.80301 1.30593 1.07728 1.49718 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 48 1.80066 1.30665 1.07816 1.49671 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 49 1.79961 1.30698 1.07856 1.49650 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 50 1.79920 1.30710 1.07871 1.49642 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 51 1.79910 1.30713 1.07875 1.49640 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 52 1.79915 1.30712 1.07873 1.49641 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.03298 0.04937 53 1.42543 1.68519 1.84560 0.87646 62 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08571 3.19243 3.19243 1.46634 0.26236 4.20684 0.01501 54 1.42543 1.68519 1.84560 0.87646 63 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08571 3.19243 3.19243 1.46634 0.26236 4.20684 0.01501 55 1.42543 1.68519 1.84560 0.87646 64 u + - _ 1.38629 1.38629 1.38629 1.38629 0.19670 3.19243 1.98420 1.46634 0.26236 4.20684 0.01501 56 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 57 1.73041 1.22014 1.16205 1.53826 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 58 1.73032 1.22018 1.16208 1.53823 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 59 1.73031 1.22018 1.16209 1.53823 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 60 1.73045 1.22012 1.16203 1.53827 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 61 1.73086 1.21995 1.16188 1.53839 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 62 1.73176 1.21956 1.16156 1.53866 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.24120 0.01449 63 1.73350 1.21882 1.16092 1.53917 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02920 3.54805 64 0.67891 2.20583 1.83449 1.50068 73 A + - , 1.38629 1.38629 1.38629 1.38629 0.05759 3.10861 4.48290 0.44662 1.02106 1.09861 0.40547 65 1.27874 1.80918 2.30453 0.78085 75 u + - , 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 66 3.25117 4.41296 0.06590 4.34840 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 67 1.64864 2.62032 0.44263 2.37988 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 68 1.74216 1.88766 0.66339 1.84309 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 69 2.48409 3.96809 0.13211 3.84212 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 70 2.18794 3.02726 0.25733 2.71371 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 71 2.74063 2.74158 3.49863 0.17344 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 72 3.11993 2.94910 3.48747 0.13596 82 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 73 2.65427 0.22425 3.66741 2.25388 83 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 74 0.80861 3.17088 0.80038 2.75831 84 g + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 75 0.08566 3.89912 3.34362 3.62961 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 76 1.95212 1.90772 2.31829 0.49238 86 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04848 3.77641 3.71224 0.80171 0.59523 1.09861 0.40547 77 2.78878 2.76525 3.19245 0.18096 88 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02317 4.46970 4.46970 1.46634 0.26236 0.65514 0.73266 78 3.12049 0.29899 2.83418 1.86089 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 79 4.02700 0.15898 3.80453 2.23599 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 80 2.05201 1.26274 1.69932 0.90180 91 u = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 81 2.64061 0.96403 2.42974 0.77812 92 u = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 82 4.46840 0.08422 4.27216 2.89403 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 83 2.63297 0.49193 2.41295 1.48218 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 84 3.04396 1.50376 2.61296 0.42046 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 85 2.72241 1.59220 2.39654 0.44664 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 86 3.30601 1.85556 3.19887 0.26636 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 87 4.05941 0.12317 3.82441 2.56656 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 88 4.18985 3.03694 4.13882 0.08237 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02286 4.48290 4.48290 1.46634 0.26236 1.09861 0.40547 89 2.43666 0.93367 2.14997 0.90894 100 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02316 4.48290 4.45767 1.46634 0.26236 1.09861 0.40547 90 2.05610 3.53266 0.22883 3.05001 101 G + - : 1.38629 1.38629 1.38629 1.38629 0.01150 4.47125 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Thr STATES 289 NODES 76 CLEN 90 W 112 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:59 2015 COM [1] cmbuild --hand --enone Thr-final-vert.cm ../Thr-2nd-align.sto COM [2] cmcalibrate --seed 208 Thr-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1092 EFFN 1092.000000 CKSUM 1485268043 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.6187 0.71859 ECMLC 0.69563 -6.75072 2.13718 1600000 581173 0.002065 ECMGC 0.28879 -39.59025 -23.84142 1600000 37781 0.010587 ECMLI 0.70967 -5.83890 2.68197 1600000 507432 0.002365 ECMGI 0.29633 -35.66417 -20.45817 1600000 36223 0.011043 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 112 157 -15.021 -16.266 -0.001 -10.270 IL 1 1 2 1 4 19 39 113 158 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 41 113 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 123 - u - + MR 3 2 3 5 5 28 49 112 157 -15.069 -0.000 -14.884 -15.096 -15.988 0.431 -0.750 -2.085 0.865 D 4 2 3 5 5 17 36 109 154 -6.226 -1.581 -3.853 -5.284 -0.843 IR 5 5 3 5 5 20 41 112 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 122 G C = = MP 6 5 3 10 6 28 48 111 156 -16.003 -15.942 -0.000 -14.719 -14.998 -15.393 -12.078 -6.656 -12.270 1.065 -14.161 -13.679 -9.435 -12.378 -0.369 3.633 -12.320 -0.663 -9.484 -5.035 -11.365 -4.250 ML 7 5 3 10 6 19 39 109 154 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 39 109 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 16 35 103 149 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 10 10 5 10 6 20 40 110 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 41 110 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 121 C G = = MP 12 11 6 16 6 27 46 109 154 -16.003 -15.942 -0.000 -14.719 -14.998 -15.393 -12.999 -3.209 -12.341 -9.455 -0.744 -4.218 3.051 -3.315 -12.437 -9.408 -12.568 -11.581 2.540 -5.481 -0.027 -5.081 ML 13 11 6 16 6 19 39 107 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 39 107 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 16 35 101 147 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 16 16 5 16 6 20 40 108 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 41 108 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 120 c g = = MP 18 17 6 22 6 26 44 107 152 -16.003 -6.746 -0.014 -14.719 -14.998 -15.393 -7.798 -3.877 -6.594 1.468 -1.169 0.238 2.612 -0.497 -8.031 -0.297 -8.599 -4.128 1.733 -3.058 -1.913 -3.108 ML 19 17 6 22 6 19 39 105 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 39 105 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 16 35 100 145 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 22 22 5 22 6 20 40 106 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 22 43 106 151 -5.333 -0.056 -8.845 -7.012 -8.118 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 118 c g = = MP 24 23 6 28 6 24 42 105 150 -6.189 -15.942 -0.030 -7.210 -14.998 -15.393 -2.665 -4.980 -8.065 -0.710 -0.568 -0.974 2.772 -2.982 -6.186 -0.839 -8.679 -6.565 2.307 -0.927 -0.502 -1.781 ML 25 23 6 28 6 19 38 103 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 38 103 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 16 35 99 144 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 28 28 5 28 6 22 41 104 149 -6.666 -6.929 -0.035 -8.584 -9.360 -9.021 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 40 104 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 117 U A = = MP 30 29 6 34 6 22 41 103 148 -15.993 -15.932 -0.000 -14.709 -14.989 -15.384 -1.272 -2.734 -4.509 0.034 -0.727 -4.077 0.366 -3.469 -5.353 -2.534 -8.018 -4.090 3.443 -2.500 -1.121 -0.851 ML 31 29 6 34 6 19 38 100 146 -9.790 -10.136 -4.850 -0.064 -9.986 -7.515 -4.386 1.937 -5.009 -3.458 MR 32 29 6 34 6 18 37 101 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 16 35 98 143 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 34 34 5 34 6 19 39 102 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 39 102 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 116 A U = = MP 36 35 6 40 6 20 39 101 146 -6.122 -15.932 -0.021 -14.709 -14.989 -15.384 -2.415 -4.472 -8.506 3.206 -2.216 -3.806 -2.982 -0.952 -8.662 0.535 -9.156 -3.486 0.362 -1.046 -4.123 1.161 ML 37 35 6 40 6 18 36 99 144 -9.790 -10.136 -4.850 -0.064 -9.986 -7.515 -3.782 -3.445 -4.575 1.924 MR 38 35 6 40 6 17 36 99 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 16 34 97 143 -10.268 -8.967 -4.764 -0.753 -5.463 -1.539 IL 40 40 5 40 6 19 37 100 145 -6.721 -6.984 -0.034 -8.639 -9.415 -9.076 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 37 100 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 115 G C = = MP 42 41 6 46 4 18 37 99 144 -15.216 -15.423 -0.001 -10.749 -10.453 -2.073 -10.308 1.208 -11.447 -10.771 -1.388 -10.968 -4.841 3.672 -10.845 -2.473 -3.263 -10.117 -8.519 -9.262 ML 43 41 6 46 4 17 35 98 143 -7.036 -7.218 -0.045 -5.948 1.955 -4.920 -4.371 -4.634 MR 44 41 6 46 4 16 35 97 143 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 15 33 96 142 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 36 99 145 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 36 98 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 16 35 97 142 -16.136 -0.000 -14.790 -3.477 -11.114 -12.613 1.967 D 49 47 6 50 3 15 33 95 141 -7.411 -0.499 -1.803 IL 50 50 3 50 3 16 35 97 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 15 34 96 141 -16.792 -0.000 1.935 -11.709 -2.519 -11.265 D 52 50 3 53 2 14 33 95 140 -8.445 -0.004 IL 53 53 3 53 2 15 34 96 142 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 14 33 95 140 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 63 100 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 63 100 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 45 82 -0.000 -14.131 -13.539 -14.179 [ MATP 15 ] 12 36 G C = = MP 58 57 1 62 6 2 3 45 82 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -13.685 -10.570 -15.215 -1.159 -15.445 -11.821 -9.861 -14.963 -11.920 3.910 -12.144 -0.962 -10.190 -12.254 -12.258 -14.014 ML 59 57 1 62 6 1 1 43 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 43 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 40 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 44 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 44 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 35 C G = = MP 64 63 6 68 6 2 3 43 80 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -13.056 -13.338 -12.373 -9.575 -2.969 -12.517 3.177 -11.639 -12.477 -9.546 -12.597 -11.742 2.758 -12.890 -4.073 -11.279 ML 65 63 6 68 6 1 1 41 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 41 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 38 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 42 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 34 U A = = MP 70 69 6 74 6 2 3 41 78 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -13.055 -13.334 -12.373 2.113 -3.452 -12.518 -3.588 -11.639 -12.477 -9.544 -12.597 -11.734 3.493 -12.890 -2.064 -11.279 ML 71 69 6 74 6 1 1 39 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 39 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 37 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 40 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 40 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 33 U A = = MP 76 75 6 80 4 2 2 39 76 -15.227 -15.434 -0.007 -7.638 -1.811 -5.387 -12.349 -9.481 -1.482 -0.876 1.409 -11.620 -4.398 -9.438 -12.575 -11.616 3.228 -5.523 -3.636 1.384 ML 77 75 6 80 4 1 1 38 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 37 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 36 73 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 39 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 39 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 2 37 74 -16.129 -0.000 -14.783 1.991 -12.021 -11.323 -5.441 D 83 81 6 84 3 0 0 34 71 -10.003 -5.516 -0.033 IL 84 84 3 84 3 1 1 38 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 36 73 -16.129 -0.171 -3.165 1.015 -2.386 0.232 -0.706 D 86 84 3 87 3 0 0 34 71 -10.003 -5.516 -0.033 IL 87 87 3 87 3 1 1 37 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - c - + - ML 88 87 3 90 3 1 1 35 72 -15.959 -1.136 -0.876 -0.134 0.789 -5.449 0.420 D 89 87 3 90 3 0 0 34 71 -14.450 -9.963 -0.002 IL 90 90 3 90 3 1 1 35 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 33 71 -2.414 -3.833 -0.430 0.387 0.013 -7.977 0.748 D 92 90 3 93 3 0 0 34 71 -16.813 -0.191 -3.013 IL 93 93 3 93 3 1 1 35 72 -1.291 -2.603 -1.229 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - a - + - ML 94 93 3 96 3 1 1 34 72 -15.331 -0.017 -6.415 0.535 -0.523 0.289 -0.658 D 95 93 3 96 3 0 0 31 68 -16.331 -3.016 -0.190 IL 96 96 3 96 3 1 1 35 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - u - + - ML 97 96 3 99 3 1 1 33 71 -15.443 -0.603 -1.550 0.215 0.070 -2.446 0.683 D 98 96 3 99 3 0 0 30 67 -16.166 -6.359 -0.018 IL 99 99 3 99 3 1 1 35 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - c - + - ML 100 99 3 102 3 1 1 33 70 -1.619 -0.568 -13.511 -0.436 0.779 -8.056 0.624 D 101 99 3 102 3 0 0 30 67 -3.175 -0.170 -11.182 IL 102 102 3 102 3 1 1 34 71 -0.712 -1.360 -12.568 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.946 -4.603 -5.307 -3.622 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.136 -0.000 -14.790 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - a - + - ML 109 108 2 111 5 1 1 26 44 -15.070 -0.000 -14.885 -15.097 -15.989 0.936 -0.730 0.152 -1.423 D 110 108 2 111 5 0 0 26 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 56 u a = = MP 112 111 3 116 6 2 2 25 43 -6.087 -15.943 -0.022 -14.720 -14.999 -15.394 -11.970 -11.864 -11.672 -2.593 0.138 -12.128 2.617 -3.825 -11.646 -2.658 -11.968 -9.627 2.931 -12.010 -0.432 -10.402 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 24 43 -6.764 -7.026 -0.033 -8.682 -9.458 -9.118 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 40 55 u a = = MP 118 117 6 122 6 2 2 23 41 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -12.020 -11.926 -11.709 -2.958 -3.786 -12.150 2.942 -4.773 -11.688 -3.233 -12.002 -9.702 2.972 -12.054 -4.639 -3.617 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 54 G C = = MP 124 123 6 128 6 2 2 21 39 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -2.473 -3.247 -13.765 -0.531 -15.094 -12.203 -9.855 -13.721 -0.341 3.827 -12.219 -4.674 -10.069 -12.487 -12.085 -12.416 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 42 53 G C = = MP 130 129 6 134 6 2 2 19 37 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -10.992 -2.471 -10.898 -0.002 -5.160 -4.655 -7.030 -5.538 -2.558 3.782 -11.165 -1.181 -7.300 -1.518 -9.063 -9.855 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 43 52 U A = = MP 136 135 6 140 4 2 2 17 35 -15.227 -15.434 -0.000 -13.848 -13.024 -4.789 -12.355 -5.017 -0.925 -4.636 0.453 -11.625 -12.455 -9.466 -12.581 -11.649 3.165 -3.127 1.277 1.316 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - C - + - ML 142 141 6 144 3 1 1 14 32 -16.136 -0.000 -14.790 -11.910 1.837 -12.470 -1.228 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.136 -0.000 -14.790 -6.075 -6.007 -10.554 1.989 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - U - * - ML 148 147 3 150 3 1 1 11 30 -16.136 -0.000 -14.790 -13.422 -12.041 -15.000 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.136 -0.000 -14.790 -10.661 -12.419 2.000 -11.408 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - U - * - ML 154 153 3 156 3 1 1 8 27 -16.136 -0.000 -14.790 -13.422 -12.041 -15.000 2.000 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.467 -0.016 -14.790 2.000 -12.074 -11.321 -11.407 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 7 12 -4.540 -0.073 -7.240 0.000 0.000 0.000 0.000 [ MATL 41 ] 51 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.974 -4.732 -4.946 -10.885 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 60 106 -16.136 -0.000 -14.790 IL 165 165 2 165 3 1 6 62 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 57 - A - + - ML 166 165 2 168 3 1 5 60 106 -16.136 -0.066 -4.492 1.763 -1.337 -4.544 -2.588 D 167 165 2 168 3 0 4 58 104 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 61 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - a - + - ML 169 168 3 171 2 1 4 59 105 -16.726 -0.000 0.799 -1.182 0.631 -1.884 D 170 168 3 171 2 0 3 58 104 -11.471 -0.001 IL 171 171 3 171 2 1 5 59 106 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 58 104 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.827 -14.131 -13.539 -0.007 [ MATP 48 ] 59 76 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 60 75 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 61 74 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 62 73 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 63 72 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 64 71 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 65 70 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.440 -15.121 -4.364 -0.072 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - A - + - ML 216 215 6 218 3 1 1 13 32 -11.817 -0.001 -10.471 1.994 -7.946 -7.221 -7.359 D 217 215 6 218 3 0 0 8 26 -17.482 -12.995 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - G - + - ML 219 218 3 221 3 1 1 12 30 -11.817 -0.001 -10.471 -6.453 -8.215 1.992 -7.213 D 220 218 3 221 3 0 0 7 25 -17.482 -12.995 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - C - + - ML 222 221 3 224 3 1 1 10 29 -11.817 -0.001 -10.471 -7.298 1.992 -7.766 -6.336 D 223 221 3 224 3 0 0 5 24 -17.482 -12.995 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 69 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.994 -7.946 -7.221 -7.359 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 53 99 -16.136 -0.000 -14.790 IL 230 230 2 230 3 1 1 55 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 77 - A - + - ML 231 230 2 233 3 1 4 53 99 -0.939 -1.064 -14.790 1.652 -6.243 -0.356 -3.984 D 232 230 2 233 3 0 0 50 97 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 3 53 99 -4.465 -0.067 -12.660 0.000 0.000 0.000 0.000 [ MATL 62 ] 80 - u - + - ML 234 233 3 236 5 1 4 51 98 -15.070 -0.000 -14.885 -15.097 -15.989 -1.039 0.417 -2.253 0.977 D 235 233 3 236 5 0 0 50 96 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 52 98 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 81 114 G C = = MP 237 236 3 241 6 2 4 50 97 -16.004 -5.180 -0.041 -14.720 -14.999 -15.394 -13.514 -10.578 -14.720 -1.337 -15.352 -11.901 -9.858 -14.561 -11.913 3.869 -12.161 -0.667 -1.489 -12.304 -12.213 -13.451 ML 238 236 3 241 6 1 1 48 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 48 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 44 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 50 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 49 95 -1.421 -1.360 -2.582 -3.855 -10.216 0.000 0.000 0.000 0.000 [ MATP 64 ] 82 111 G C = = MP 243 242 6 247 6 2 4 48 95 -15.988 -15.928 -0.001 -14.704 -10.517 -15.379 -4.081 -2.706 -9.775 2.482 -10.906 -4.676 -0.174 -10.466 -10.214 3.154 -10.460 -4.761 -2.819 -2.708 -5.825 -5.406 ML 244 242 6 247 6 1 1 41 87 -9.959 -10.306 -5.020 -0.056 -10.155 -7.685 1.957 -4.982 -4.431 -4.694 MR 245 242 6 247 6 1 1 47 93 -9.379 -8.108 -4.017 -8.086 -0.125 -6.300 -2.880 1.828 -3.693 -2.080 D 246 242 6 247 6 0 0 42 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 48 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 48 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 83 110 A U = = MP 249 248 6 253 6 2 2 46 93 -6.270 -6.313 -0.106 -7.022 -14.983 -4.725 -1.555 -0.480 -9.918 3.231 -5.712 -10.542 -0.247 -10.589 -10.329 2.119 -10.590 -1.857 -4.066 -9.794 -8.141 -8.874 ML 250 248 6 253 6 1 1 38 84 -9.959 -10.306 -5.020 -0.056 -10.155 -7.685 -4.018 -5.518 1.956 -4.752 MR 251 248 6 253 6 1 1 46 92 -9.604 -8.333 -0.168 -8.311 -3.445 -6.525 -0.592 1.405 -2.356 -1.018 D 252 248 6 253 6 0 0 40 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 38 84 -6.576 -6.838 -4.756 -0.089 -9.270 -8.930 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 42 88 -5.703 -2.089 -0.440 -7.382 -8.488 0.000 0.000 0.000 0.000 [ MATP 66 ] 85 108 G C = = MP 255 254 6 259 6 2 2 45 91 -15.891 -15.830 -0.169 -7.250 -3.581 -5.632 -4.908 -2.076 -9.679 0.796 -4.974 -10.274 -2.453 -10.369 -10.117 3.671 -10.363 -5.530 -2.625 -5.683 -0.262 -8.644 ML 256 254 6 259 6 1 1 34 80 -12.191 -12.537 -7.252 -0.027 -12.387 -6.459 1.389 -1.217 -4.134 -0.163 MR 257 254 6 259 6 1 1 44 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 30 76 -15.303 -14.002 -9.799 -10.481 -10.498 -0.004 IL 259 259 5 259 6 1 1 44 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 44 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 86 107 g c = = MP 261 260 6 265 4 2 2 42 89 -5.979 -4.071 -0.171 -4.780 -1.645 1.688 -9.526 1.970 -4.198 -1.700 -5.724 -10.215 -4.807 2.975 -10.208 -3.132 -4.033 -3.770 -7.732 -8.491 ML 262 260 6 265 4 1 1 32 78 -9.477 -9.659 -0.107 -3.861 0.105 1.298 -1.358 -3.733 MR 263 260 6 265 4 1 1 44 90 -11.758 -2.503 -0.538 -2.895 -3.625 -0.421 1.623 -3.437 D 264 260 6 265 4 0 0 29 75 -11.314 -10.995 -1.444 -0.663 IL 265 265 5 265 4 1 1 37 83 -5.908 -6.592 -0.757 -1.392 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 48 94 -0.577 -2.628 -2.577 0.000 0.000 0.000 0.000 [ MATL 68 ] 88 - U - + - ML 267 266 6 269 3 1 1 28 55 -4.292 -0.085 -7.421 -0.332 -0.215 -2.684 1.130 D 268 266 6 269 3 0 0 26 53 -4.483 -0.345 -2.573 IL 269 269 3 269 3 1 1 30 57 -1.052 -0.952 -10.194 0.000 0.000 0.000 0.000 [ MATL 69 ] 92 - U - + - ML 270 269 3 272 3 1 1 25 52 -16.101 -0.017 -6.444 -1.094 -0.970 -2.431 1.504 D 271 269 3 272 3 0 0 24 51 -12.223 -0.333 -2.279 IL 272 272 3 272 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 93 - A - + - ML 273 272 3 275 3 1 1 24 51 -16.113 -0.008 -7.458 1.434 -0.049 -4.786 -1.756 D 274 272 3 275 3 0 0 23 50 -11.626 -0.023 -6.018 IL 275 275 3 275 3 1 1 26 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 94 - A - + - ML 276 275 3 278 3 1 1 23 50 -3.591 -0.205 -4.339 1.289 -0.866 -1.249 -0.769 D 277 275 3 278 3 0 0 20 47 -10.159 -2.323 -0.323 IL 278 278 3 278 3 1 1 24 51 -2.362 -0.555 -3.004 0.000 0.000 0.000 0.000 [ MATL 72 ] 97 - A - + - ML 279 278 3 281 3 1 1 22 49 -16.037 -0.038 -5.252 1.588 -0.954 -5.049 -1.162 D 280 278 3 281 3 0 0 19 46 -13.651 -2.844 -0.217 IL 281 281 3 281 3 1 1 24 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 98 - A - + - ML 282 281 3 284 3 1 1 21 48 -4.560 -0.465 -2.102 1.104 0.188 -1.728 -1.290 D 283 281 3 284 3 0 0 11 38 -13.948 -5.658 -0.029 IL 284 284 3 284 3 1 1 25 52 -0.985 -1.064 -5.920 0.000 0.000 0.000 0.000 [ MATL 74 ] 102 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.968 0.553 -4.398 1.157 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Thr LENG 90 MAXL 160 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:14:00 2015 COM [1] cmbuild --hand --enone Thr-final-vert.cm ../Thr-2nd-align.sto NSEQ 1092 EFFN 21.898819 CKSUM 1485268043 STATS LOCAL MSV -8.8175 0.71859 STATS LOCAL VITERBI -9.5069 0.71859 STATS LOCAL FORWARD -3.6459 0.71859 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24786 1.46057 1.49768 1.35818 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 0.00000 * 1 1.84375 3.37960 0.26855 3.14133 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 2 2.90619 0.71642 2.75570 0.93329 2 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 3 1.61494 0.91610 2.02636 1.31228 3 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 4 2.04029 0.94697 2.09806 1.02332 4 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02289 4.05049 5.25604 0.51915 0.90393 1.09861 0.40547 5 1.83627 1.70870 2.18439 0.60341 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 6 0.86152 1.94554 1.85715 1.27850 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02340 4.02209 5.25604 0.50623 0.92322 1.09861 0.40547 7 1.73685 3.00249 0.31431 3.12421 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01094 5.25663 5.17360 1.46634 0.26236 1.09861 0.40547 8 3.40644 4.08303 4.70927 0.06084 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01049 5.25618 5.25618 1.46634 0.26236 1.04403 0.43392 9 0.05731 5.09744 3.15392 4.97573 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 10 3.35530 5.45359 0.04463 5.41128 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 11 4.82260 0.57462 4.67263 0.86824 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 12 1.37011 2.96235 4.51232 0.38090 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 13 2.29099 1.43391 2.34899 0.57094 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01493 5.25663 4.64551 1.46634 0.26236 1.09861 0.40547 14 0.01587 5.65993 5.36846 4.87941 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01053 5.25223 5.25223 1.46634 0.26236 1.34612 0.30144 15 0.77615 2.49590 1.31097 1.67215 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11571 5.25223 2.26303 1.46634 0.26236 1.34612 0.30144 16 1.48467 0.90042 3.27798 1.11072 18 c + - _ 1.38629 1.38629 1.38629 1.38629 0.66880 5.14820 0.73009 1.46634 0.26236 3.12290 0.04503 17 1.19001 1.41685 2.61479 0.96727 19 u + - _ 1.38629 1.38629 1.38629 1.38629 1.28303 1.90899 0.55413 0.14343 2.01274 0.14978 1.97253 18 1.07685 1.72188 1.33002 1.53188 22 a + - _ 1.38629 1.38629 1.38629 1.38629 0.10242 4.85562 2.41282 1.46634 0.26236 1.89453 0.16298 19 1.24014 1.40107 2.37326 0.99117 23 u + - _ 1.38629 1.38629 1.38629 1.38629 0.34317 4.84369 1.26370 1.46634 0.26236 1.74980 0.19093 20 1.59134 0.97531 2.86862 1.01474 24 c + - _ 1.38629 1.38629 1.38629 1.38629 0.40634 1.12642 4.63341 0.87011 0.54284 0.02199 3.82830 21 0.07067 3.84392 4.05144 3.52587 32 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 22 0.76271 2.29865 1.45577 1.60953 33 a = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 23 0.40542 4.66416 2.69933 1.36013 34 A = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 24 0.87782 4.80700 0.56964 4.56502 35 G = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 25 5.40356 0.07748 5.29102 2.73305 36 C = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 26 0.82466 1.84419 1.36175 1.91561 37 a + - , 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 27 3.11044 0.84790 2.87071 0.75408 38 u = - < 1.38629 1.38629 1.38629 1.38629 0.02380 4.00045 5.25663 0.49633 0.93844 1.09861 0.40547 28 3.27064 0.78345 3.04808 0.78146 40 u = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 29 2.46940 4.09267 0.12879 3.93696 41 G = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 30 2.10340 3.20897 0.24791 2.86244 42 G = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 31 2.65795 1.70310 2.58386 0.39704 43 U = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 32 4.74191 0.12477 5.24731 2.26996 44 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 33 4.17577 4.04875 4.89410 0.04113 45 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 34 5.47793 5.11180 6.07686 0.01258 46 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 35 5.08082 6.25343 0.01191 5.59826 47 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 36 5.47793 5.11180 6.07686 0.01258 48 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 37 0.00985 5.99104 5.54969 5.68185 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02065 4.18469 5.25663 0.58407 0.81560 1.09861 0.40547 38 0.03631 4.34399 4.24117 4.79328 51 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 39 0.75525 2.64411 1.28367 1.70364 52 a = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 40 3.20428 0.27667 3.11023 1.85461 53 C = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 41 2.80173 0.18248 3.90819 2.45324 54 C = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 42 0.82215 3.21029 0.76018 2.94527 55 g = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 43 0.75681 3.02894 0.85778 2.84094 56 a = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 44 0.20239 2.30799 3.64547 2.85333 57 A + - , 1.38629 1.38629 1.38629 1.38629 0.05109 5.25663 3.11018 1.46634 0.26236 1.09861 0.40547 45 0.90898 2.08796 1.04002 2.12294 58 a + - , 1.38629 1.38629 1.38629 1.38629 2.22072 5.21645 0.12099 1.46634 0.26236 2.35654 0.09954 46 1.80805 1.30439 1.07542 1.49819 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 47 1.80275 1.30601 1.07738 1.49713 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 48 1.80024 1.30678 1.07832 1.49663 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 49 1.79908 1.30714 1.07875 1.49639 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 50 1.79860 1.30729 1.07893 1.49630 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 51 1.79844 1.30733 1.07899 1.49626 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 52 1.79844 1.30733 1.07899 1.49627 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.92963 0.05490 53 0.34820 2.52203 2.31716 2.16117 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06844 3.40891 3.40891 1.46634 0.26236 5.10353 0.00609 54 1.93627 2.68221 0.38179 2.25655 67 G + - _ 1.38629 1.38629 1.38629 1.38629 0.06844 3.40891 3.40891 1.46634 0.26236 5.10353 0.00609 55 2.00370 0.49800 2.54270 1.72167 68 C + - _ 1.38629 1.38629 1.38629 1.38629 0.06844 3.40891 3.40891 1.46634 0.26236 5.10353 0.00609 56 0.34820 2.52203 2.31716 2.16117 69 A + - _ 1.38629 1.38629 1.38629 1.38629 0.41318 3.40891 1.18621 1.46634 0.26236 5.10353 0.00609 57 1.72974 1.22043 1.16229 1.53806 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 58 1.72970 1.22044 1.16231 1.53805 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 59 1.72976 1.22042 1.16229 1.53806 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 60 1.72998 1.22033 1.16221 1.53813 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 61 1.73049 1.22011 1.16202 1.53828 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 62 1.73154 1.21966 1.16164 1.53859 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 63 1.73350 1.21882 1.16092 1.53917 76 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01164 4.45918 64 0.26852 4.11901 1.65471 3.57271 77 A + - , 1.38629 1.38629 1.38629 1.38629 0.64054 0.75976 5.25663 0.06629 2.74665 1.09861 0.40547 65 1.87420 1.15178 2.57817 0.78847 80 u + - , 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 66 3.23959 4.87982 0.07487 3.67458 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.01326 5.25663 4.83304 1.46634 0.26236 1.09861 0.40547 67 1.16823 2.59832 0.58302 2.87398 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.01109 5.25387 5.14930 1.46634 0.26236 1.26057 0.33337 68 0.69143 2.61701 0.96925 3.06285 83 A = - < 1.38629 1.38629 1.38629 1.38629 0.05689 4.09417 3.25359 0.54092 0.87279 0.79807 0.59820 69 1.83149 3.02966 0.35087 2.43705 85 G = - < 1.38629 1.38629 1.38629 1.38629 0.10484 5.22277 2.36302 1.46634 0.26236 2.23932 0.11264 70 1.00743 2.77020 0.66835 2.81941 86 G = - < 1.38629 1.38629 1.38629 1.38629 0.07860 4.28617 2.78331 0.71247 0.67419 0.58358 0.81621 71 1.52477 1.53591 2.60214 0.70734 88 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06839 2.89532 4.52633 0.73966 0.64871 0.27679 1.41969 72 1.98582 1.98633 2.73404 0.41464 92 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02100 5.23470 4.16976 1.46634 0.26236 0.50227 0.92927 73 0.42850 1.51837 3.44969 2.32598 93 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01570 5.24231 4.57662 1.46634 0.26236 0.42950 1.05221 74 0.60235 1.91254 2.09962 1.70228 94 A + - _ 1.38629 1.38629 1.38629 1.38629 0.12369 2.69796 3.01579 0.35656 1.20423 1.20545 0.35604 75 0.33280 2.04893 3.48439 2.09118 97 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04674 5.20793 3.21400 1.46634 0.26236 1.55351 0.23763 76 0.71496 1.35632 2.29767 1.87936 98 a + - _ 1.38629 1.38629 1.38629 1.38629 0.28062 3.17894 1.59428 0.81547 0.58417 1.37626 0.29105 77 2.32952 1.05400 3.28397 0.66041 102 U + - _ 1.38629 1.38629 1.38629 1.38629 0.15172 2.53940 2.78298 1.02138 0.44644 0.25804 1.48088 78 2.72685 0.51638 2.50814 1.36072 107 C = - > 1.38629 1.38629 1.38629 1.38629 0.01151 5.16312 5.16312 1.46634 0.26236 1.06281 0.42386 79 3.13926 0.35886 2.44080 1.76537 108 C = - > 1.38629 1.38629 1.38629 1.38629 0.01329 4.87089 5.19662 1.10868 0.40047 0.26545 1.45612 80 2.97501 0.97601 2.51974 0.70996 110 u = - > 1.38629 1.38629 1.38629 1.38629 0.01055 5.24981 5.24981 1.46634 0.26236 0.62487 0.76643 81 3.19686 0.59641 2.50912 1.11784 111 C = - > 1.38629 1.38629 1.38629 1.38629 0.02860 3.77303 5.25663 0.79645 0.59952 1.09861 0.40547 82 3.72727 0.11628 4.71200 2.56744 114 C = - > 1.38629 1.38629 1.38629 1.38629 0.01655 5.25604 4.49169 1.46634 0.26236 1.09861 0.40547 83 3.33056 0.33753 2.86872 1.64028 115 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01055 5.25004 5.25004 1.46634 0.26236 1.42253 0.27589 84 1.77109 1.84941 1.93578 0.63826 116 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01055 5.25004 5.25004 1.46634 0.26236 1.42253 0.27589 85 0.66220 2.23717 1.61923 1.71772 117 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01055 5.25004 5.25004 1.46634 0.26236 0.65818 0.72938 86 1.17476 1.94915 0.93233 1.86382 118 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01890 4.30475 5.25604 0.64901 0.73933 1.09861 0.40547 87 1.42620 1.82695 1.03391 1.41362 120 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 88 1.03839 2.80074 0.66009 2.68233 121 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 89 2.77288 0.37421 3.18940 1.56787 122 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 90 1.11883 1.81939 2.37191 0.87249 123 u + - : 1.38629 1.38629 1.38629 1.38629 0.00526 5.25081 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Trp STATES 289 NODES 76 CLEN 90 W 113 ALPH RNA RF yes CONS yes MAP yes DATE Tue Sep 22 15:34:35 2015 COM [1] cmbuild --hand --enone Trp_vert.cm Trp-2nd-align.sto COM [2] cmcalibrate --seed 208 Trp_vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 2811790383 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.2944 0.71865 ECMLC 0.70596 -6.54933 2.24444 1600000 596103 0.002013 ECMGC 0.31886 -41.93582 -27.08746 1600000 45522 0.008787 ECMLI 0.71263 -6.03986 2.56790 1600000 553604 0.002168 ECMGI 0.33038 -37.79650 -23.60600 1600000 43465 0.009203 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 113 156 -15.013 -16.259 -0.000 -12.712 IL 1 1 2 1 4 16 38 114 157 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 40 114 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 117 - G - + MR 3 2 3 5 5 23 45 113 156 -15.062 -0.000 -14.877 -15.089 -15.981 -3.787 -5.132 1.888 -2.332 D 4 2 3 5 5 14 33 111 155 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 16 38 113 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 116 A U = = MP 6 5 3 10 6 24 44 112 155 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.038 -10.698 -12.233 3.935 -14.374 -15.529 -9.832 -12.276 -11.793 -0.673 -12.463 -6.000 -9.757 -13.539 -11.663 -4.011 ML 7 5 3 10 6 15 35 110 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 35 110 153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 31 106 150 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 37 111 155 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 111 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 115 G C = = MP 12 11 6 16 6 24 42 110 153 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.016 -10.591 -13.677 1.024 -15.032 -12.215 -9.818 -13.650 -2.102 3.690 -12.211 -4.869 -0.344 -12.480 -12.034 -12.331 ML 13 11 6 16 6 15 35 108 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 35 108 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 30 104 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 36 109 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 37 109 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 114 a u = = MP 18 17 6 22 6 23 40 108 151 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.590 0.205 -11.616 2.957 -12.916 -4.251 -7.980 -12.061 -11.357 2.748 -11.716 -2.484 -8.208 -4.565 -3.705 -10.465 ML 19 17 6 22 6 15 34 106 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 34 106 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 30 102 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 36 107 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 36 107 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 113 a u = = MP 24 23 6 28 6 21 38 106 149 -5.198 -15.935 -0.040 -14.712 -14.991 -15.387 -10.048 -2.103 -9.872 2.949 -11.012 -10.481 -2.083 -10.552 -10.293 2.790 -10.547 -4.056 -0.331 -5.151 -8.087 -8.832 ML 25 23 6 28 6 15 34 104 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 34 104 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 30 100 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 37 105 148 -7.608 -7.871 -0.018 -9.526 -10.303 -9.963 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 35 105 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 112 A U = = MP 30 29 6 34 6 19 36 104 147 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -2.032 -0.496 -2.233 3.206 -4.000 -11.994 -7.475 -3.502 -11.111 2.402 -11.525 -3.488 -3.751 -11.139 -9.457 -9.837 ML 31 29 6 34 6 14 33 102 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 33 102 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 29 99 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 34 103 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 34 103 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 111 C G = = MP 36 35 6 40 6 17 34 102 145 -6.356 -15.935 -0.018 -14.712 -14.991 -15.387 -11.529 -11.346 -6.146 -1.910 -10.012 -11.911 3.364 -10.767 -11.271 -3.440 -4.579 -9.024 2.363 -11.622 -4.563 -3.320 ML 37 35 6 40 6 14 32 100 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 31 100 143 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 29 98 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 33 101 144 -6.503 -6.766 -0.039 -8.421 -9.197 -8.858 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 33 101 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 110 U A = = MP 42 41 6 46 4 15 32 100 143 -15.219 -15.426 -0.001 -10.688 -12.516 -12.178 -12.399 -11.794 -10.590 -12.255 -11.323 -12.089 -10.486 -11.793 -12.595 -12.098 3.996 -10.582 -5.820 -5.603 ML 43 41 6 46 4 13 31 99 142 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 30 98 142 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 29 97 141 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 32 100 143 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 31 99 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 13 30 98 141 -16.128 -0.000 -14.782 -12.156 -2.336 -13.145 1.927 D 49 47 6 50 3 11 28 96 139 -7.453 -2.966 -0.207 IL 50 50 3 50 3 13 31 98 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 12 29 97 140 -6.175 -0.020 1.984 -11.995 -4.560 -11.376 D 52 50 3 53 2 11 28 96 139 -8.565 -0.004 IL 53 53 3 53 2 12 29 97 140 -5.915 -0.024 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 28 96 139 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 69 112 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 69 112 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 51 94 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 13 41 G C = = MP 58 57 1 62 6 2 3 51 94 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.565 -6.760 -14.871 0.082 -15.377 -11.864 -9.852 -14.685 -11.908 3.806 -3.879 -0.196 -10.163 -12.278 -12.222 -13.621 ML 59 57 1 62 6 1 1 49 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 49 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 45 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 50 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 50 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 40 G C = = MP 64 63 6 68 6 2 3 49 92 -5.657 -15.935 -0.029 -14.712 -14.991 -15.387 -13.930 -1.892 -16.260 -8.030 -15.548 -11.715 -9.850 -15.709 -11.922 3.901 -12.114 -8.486 -0.347 -12.183 -12.300 -15.355 ML 65 63 6 68 6 1 1 47 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 47 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 44 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 48 91 -7.166 -7.429 -0.025 -9.084 -9.860 -9.521 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 48 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 39 a a = = MP 70 69 6 74 6 2 3 47 90 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 2.724 -1.620 -12.287 0.888 0.533 -13.534 -7.502 -11.969 -12.040 -2.518 -12.514 -8.694 2.433 -6.204 -2.542 -11.000 ML 71 69 6 74 6 1 1 45 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 45 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 43 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 46 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 46 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 38 U G = = MP 76 75 6 80 4 2 3 45 88 -15.219 -15.426 -0.000 -13.840 -13.048 -13.330 -12.365 -9.566 -10.716 -12.510 -3.740 -0.340 -12.469 -9.538 -3.987 -11.733 2.295 -12.882 3.327 -3.040 ML 77 75 6 80 4 1 1 44 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 43 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 42 85 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 45 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 44 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - + - ML 82 81 6 84 3 1 2 43 86 -16.128 -0.000 -14.782 1.803 -2.391 -5.770 -1.727 D 83 81 6 84 3 0 0 41 84 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 43 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - A - + - ML 85 84 3 87 3 1 1 42 85 -16.128 -0.367 -2.154 1.374 -3.142 -0.607 -0.647 D 86 84 3 87 3 0 0 40 83 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 43 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - c - + - ML 88 87 3 90 3 1 1 41 84 -15.761 -1.668 -0.545 -0.148 0.742 -2.896 0.369 D 89 87 3 90 3 0 0 40 83 -15.396 -10.909 -0.001 IL 90 90 3 90 3 1 1 42 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - C - + - ML 91 90 3 93 3 1 1 41 84 -1.828 -3.291 -0.699 -0.540 1.173 -7.283 0.073 D 92 90 3 93 3 0 0 40 82 -17.145 -0.142 -3.419 IL 93 93 3 93 3 1 1 42 85 -0.914 -2.320 -1.894 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - A - + - ML 94 93 3 96 3 1 1 40 83 -15.693 -0.024 -5.898 1.617 -1.889 -1.697 -1.495 D 95 93 3 96 3 0 0 37 80 -15.609 -1.726 -0.519 IL 96 96 3 96 3 1 1 40 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - C - + - ML 97 96 3 99 3 1 1 39 82 -15.817 -0.431 -1.953 -0.761 1.040 -4.253 0.380 D 98 96 3 99 3 0 0 36 79 -15.185 -7.879 -0.006 IL 99 99 3 99 3 1 1 40 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - U - + - ML 100 99 3 102 3 1 1 38 81 -1.197 -0.827 -14.042 -1.069 0.391 -8.722 1.144 D 101 99 3 102 3 0 0 36 79 -1.996 -0.418 -10.624 IL 102 102 3 102 3 1 1 39 82 -0.619 -1.520 -13.578 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.989 -12.016 -5.048 -11.385 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.022 -6.049 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 42 - A - + - ML 109 108 2 111 5 1 1 26 44 -6.452 -0.017 -14.855 -15.068 -15.959 1.721 -4.192 -0.780 -3.928 D 110 108 2 111 5 0 0 25 43 -9.514 -0.026 -8.775 -7.150 -7.062 IL 111 111 3 111 5 1 1 26 45 -5.559 -0.048 -7.238 -9.071 -8.344 0.000 0.000 0.000 0.000 [ MATP 30 ] 44 61 A U = = MP 112 111 3 116 6 2 2 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -1.436 -2.701 -5.750 3.561 -10.918 -5.336 -5.984 -3.123 -4.956 1.135 -10.471 -3.312 -2.789 -2.621 -0.277 -4.843 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 45 60 G C = = MP 118 117 6 122 6 2 2 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -9.965 -0.749 -9.783 2.369 -10.914 -6.329 -3.488 -6.179 -10.221 3.226 -3.217 -1.265 -2.844 -5.745 -4.485 -4.829 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 46 59 G C = = MP 124 123 6 128 6 2 2 21 39 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.994 1.418 -12.172 2.085 -14.233 -15.032 -9.642 -12.243 -11.764 3.044 -12.417 -6.039 -0.339 -13.334 -11.496 -4.964 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 47 58 G C = = MP 130 129 6 134 6 2 2 19 37 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -4.462 -0.147 -14.293 -2.012 -15.247 -11.995 -9.850 -14.192 -11.896 3.853 -4.140 -1.752 -10.119 -12.360 -12.159 -12.981 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 48 57 C G = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -13.048 -13.330 -12.365 -9.567 -3.831 -2.750 3.893 -4.363 -12.469 -9.538 -12.589 -11.734 -0.331 -12.882 -3.707 -11.271 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 49 - C - + - ML 142 141 6 144 3 1 1 14 32 -6.097 -0.021 -14.782 -12.735 2.000 -13.622 -11.111 D 143 141 6 144 3 0 0 17 36 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 14 33 -4.864 -0.058 -7.564 0.000 0.000 0.000 0.000 [ MATL 36 ] 51 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 52 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 53 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 54 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 55 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 1.991 -12.024 -5.305 -11.388 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 56 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.912 -4.714 -9.981 -2.343 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 56 97 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 6 58 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 62 - A - + - ML 166 165 2 168 3 1 5 56 97 -16.128 -0.082 -4.182 1.647 -0.767 -5.807 -1.924 D 167 165 2 168 3 0 4 54 96 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 57 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 63 - A - + - ML 169 168 3 171 2 1 5 55 96 -16.702 -0.000 1.937 -5.924 -3.271 -4.318 D 170 168 3 171 2 0 4 54 95 -11.739 -0.000 IL 171 171 3 171 2 1 5 55 97 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 54 95 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 64 81 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 65 80 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 66 79 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 67 78 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 68 77 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 69 76 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 70 75 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.432 -15.113 -3.992 -0.094 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 71 - G - + - ML 216 215 6 218 3 1 1 13 32 -12.171 -0.001 -10.826 -6.783 -8.552 1.994 -7.544 D 217 215 6 218 3 0 0 8 26 -17.452 -12.965 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 72 - A - + - ML 219 218 3 221 3 1 1 12 30 -12.171 -0.001 -10.826 1.171 -6.075 -6.645 0.786 D 220 218 3 221 3 0 0 7 25 -17.452 -12.965 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 73 - A - + - ML 222 221 3 224 3 1 1 10 29 -12.171 -0.001 -10.826 1.995 -8.287 -7.547 -7.676 D 223 221 3 224 3 0 0 5 24 -17.452 -12.965 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 74 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.995 -8.287 -7.547 -7.676 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 48 89 -16.128 -0.000 -14.782 IL 230 230 2 230 3 1 1 50 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 82 - G - + - ML 231 230 2 233 3 1 4 48 89 -4.918 -0.049 -14.782 0.646 -10.657 1.262 -4.758 D 232 230 2 233 3 0 0 46 87 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 48 89 -5.967 -0.027 -8.667 0.000 0.000 0.000 0.000 [ MATL 62 ] 84 - C - + - ML 234 233 3 236 5 1 4 47 88 -15.062 -0.041 -14.877 -5.172 -15.981 -1.721 1.158 -5.136 0.523 D 235 233 3 236 5 0 0 45 86 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 47 88 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 85 109 A U = = MP 237 236 3 241 6 2 4 46 87 -15.956 -6.599 -0.015 -14.671 -14.951 -15.346 -11.997 -10.657 -12.193 3.550 -14.332 -15.482 -9.789 -12.235 -11.753 1.718 -12.422 -2.455 -0.298 -13.496 -11.620 -10.791 ML 238 236 3 241 6 1 1 44 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 2 42 83 -12.264 -10.993 -5.571 -0.056 -6.105 -9.184 -6.626 -6.011 -7.535 1.989 D 240 236 3 241 6 0 0 40 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 45 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 42 83 -5.421 -3.509 -0.188 -7.100 -8.206 0.000 0.000 0.000 0.000 [ MATP 64 ] 86 107 a u = = MP 243 242 6 247 6 2 3 44 85 -15.941 -15.880 -0.018 -14.657 -6.359 -15.332 -11.904 -2.719 -12.069 2.902 -3.805 -14.782 -9.470 -12.159 -11.689 2.721 -2.042 -0.924 -9.458 -13.165 -11.335 -0.099 ML 244 242 6 247 6 1 2 40 82 -12.149 -12.495 -1.882 -0.460 -12.344 -9.874 -5.947 1.588 -0.072 -5.285 MR 245 242 6 247 6 1 1 41 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 38 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 43 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 43 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 87 106 G C = = MP 249 248 6 253 6 2 2 42 83 -15.939 -6.264 -0.050 -14.654 -5.815 -8.151 -3.644 -1.478 -12.175 1.772 -14.296 -15.230 -9.738 -12.223 -11.731 3.493 -12.394 -4.028 -9.674 -13.423 -11.577 -0.282 ML 250 248 6 253 6 1 1 37 78 -11.705 -12.051 -6.766 -6.460 -11.901 -0.031 -6.596 -5.984 -7.502 1.989 MR 251 248 6 253 6 1 1 37 78 -11.076 -9.805 -5.714 -9.784 -4.917 -0.081 -4.792 -4.370 -5.609 1.962 D 252 248 6 253 6 0 0 37 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 41 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 40 81 -5.703 -1.678 -9.214 -0.591 -8.488 0.000 0.000 0.000 0.000 [ MATP 66 ] 88 104 A U = = MP 255 254 6 259 6 2 2 40 81 -15.894 -15.833 -0.228 -10.250 -4.190 -3.462 -6.048 -1.778 -10.036 3.349 -4.802 -10.840 -0.259 -9.728 -2.877 0.851 -10.468 -4.603 1.279 -10.161 -2.286 -6.370 ML 256 254 6 259 6 1 1 38 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 38 79 -12.191 -10.920 -1.392 -10.898 -1.323 -2.197 -3.999 -4.797 1.334 0.464 D 258 254 6 259 6 0 0 35 77 -15.472 -14.170 -9.967 -10.649 -10.667 -0.003 IL 259 259 5 259 6 1 1 40 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 39 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 89 103 G C = = MP 261 260 6 265 4 2 2 38 80 -14.905 -8.140 -0.233 -2.780 -2.156 -2.773 -11.331 -0.230 -2.230 -5.171 -1.689 -11.943 -2.904 3.815 -11.171 -7.185 -7.618 -10.704 -9.398 -10.292 ML 262 260 6 265 4 1 1 36 77 -4.649 -4.831 -1.397 -0.875 1.379 -1.387 -1.114 -0.851 MR 263 260 6 265 4 1 1 36 77 -11.421 -2.398 -1.154 -1.471 -2.057 -0.054 -5.590 1.473 D 264 260 6 265 4 0 0 35 77 -12.532 -12.213 -0.817 -1.211 IL 265 265 5 265 4 1 1 38 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 33 75 -4.865 -2.880 -0.269 0.000 0.000 0.000 0.000 [ MATL 68 ] 90 - U - + - ML 267 266 6 269 3 1 2 37 78 -4.483 -0.066 -14.442 -0.268 -2.533 -4.801 1.566 D 268 266 6 269 3 0 0 19 60 -15.302 -0.813 -1.216 IL 269 269 3 269 3 1 1 43 84 -0.643 -1.479 -10.210 0.000 0.000 0.000 0.000 [ MATL 69 ] 94 - u - + - ML 270 269 3 272 3 1 1 13 31 -15.992 -0.027 -5.760 -2.127 -2.183 0.777 0.878 D 271 269 3 272 3 0 0 12 31 -14.088 -0.077 -4.272 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 95 - A - + - ML 273 272 3 275 3 1 1 11 30 -16.098 -0.005 -8.241 1.631 -0.659 -3.546 -2.436 D 274 272 3 275 3 0 0 12 31 -12.013 -0.519 -1.729 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 96 - A - + - ML 276 275 3 278 3 1 1 10 28 -5.382 -0.085 -4.903 1.662 -2.386 -0.956 -2.954 D 277 275 3 278 3 0 0 8 27 -10.879 -0.039 -5.271 IL 278 278 3 278 3 1 1 9 28 -5.514 -0.037 -8.214 0.000 0.000 0.000 0.000 [ MATL 72 ] 98 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.080 -0.063 -4.546 1.761 -2.172 -6.127 -1.420 D 280 278 3 281 3 0 0 10 28 -12.645 -8.158 -0.005 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 99 - A - + - ML 282 281 3 284 3 1 1 6 11 -5.435 -0.137 -3.893 1.251 -0.427 -1.054 -1.339 D 283 281 3 284 3 0 0 3 8 -13.807 -6.598 -0.015 IL 284 284 3 284 3 1 1 6 11 -5.372 -0.041 -8.072 0.000 0.000 0.000 0.000 [ MATL 74 ] 101 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.569 0.273 -5.382 1.378 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Trp LENG 90 MAXL 166 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Tue Sep 22 15:34:35 2015 COM [1] cmbuild --hand --enone Trp_vert.cm Trp-2nd-align.sto NSEQ 1086 EFFN 8.554802 CKSUM 2811790383 STATS LOCAL MSV -8.9598 0.71865 STATS LOCAL VITERBI -9.7564 0.71865 STATS LOCAL FORWARD -3.6942 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.18668 1.46326 1.49201 1.43393 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 0.00000 * 1 0.10316 4.66887 2.60861 4.20001 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 2 1.81977 2.98336 0.34886 2.50317 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 3 1.02884 2.73206 0.69317 2.55743 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 4 1.09265 2.65509 0.69709 2.33977 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.04069 3.47549 4.71870 0.50209 0.92955 1.09861 0.40547 5 0.94661 2.40432 0.87751 2.24618 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 6 2.57666 0.68326 2.38892 1.11696 7 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02811 3.97449 4.71870 0.77619 0.61647 1.09861 0.40547 7 5.05140 3.82583 5.04623 0.03525 9 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01846 4.71870 4.67132 1.46634 0.26236 1.09861 0.40547 8 3.49957 2.68798 4.01260 0.12365 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01802 4.71826 4.71826 1.46634 0.26236 1.11465 0.39754 9 0.04497 4.55085 3.85629 4.40038 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.02942 3.90903 4.71826 0.73396 0.65393 1.06728 0.42151 10 2.34333 3.64635 0.16500 3.50624 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 11 2.82007 3.79495 0.14272 2.97763 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.03446 3.69091 4.71870 0.60711 0.78729 1.09861 0.40547 12 1.11463 1.61625 1.87876 1.13774 16 a = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 13 3.11562 1.86795 2.90654 0.29230 17 U = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 14 0.24378 2.60665 3.14993 2.30556 18 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 15 0.62414 2.38497 1.77825 1.59330 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.22159 4.71870 1.66164 1.46634 0.26236 1.09861 0.40547 16 1.40350 1.09036 2.33624 1.13482 20 c + - _ 1.38629 1.38629 1.38629 1.38629 0.78520 4.51915 0.62909 1.46634 0.26236 3.14695 0.04393 17 1.45892 1.04221 2.22736 1.18082 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.65483 1.90673 1.10291 0.69498 0.69132 0.12486 2.14238 18 0.46920 2.21363 2.18737 1.87741 26 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07130 4.52305 2.84795 1.46634 0.26236 1.08551 0.41208 19 1.67482 0.87235 2.64805 1.12732 27 c + - _ 1.38629 1.38629 1.38629 1.38629 0.18506 4.54873 1.84285 1.46634 0.26236 1.34302 0.30253 20 1.72716 1.25577 2.60235 0.76948 28 u + - _ 1.38629 1.38629 1.38629 1.38629 0.49582 0.96983 4.44146 1.00846 0.45379 0.06870 2.71214 21 0.04056 4.62390 3.99196 4.46766 37 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 22 1.23635 3.12450 0.55886 2.36726 38 G = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 23 0.80920 1.98809 1.56139 1.57030 39 a = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 24 3.07298 0.15274 3.61629 2.68121 40 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 25 3.71273 0.22800 3.38411 1.92721 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03044 4.71870 3.86053 1.46634 0.26236 1.09861 0.40547 26 0.29214 3.04677 1.92506 2.81419 42 A + - , 1.38629 1.38629 1.38629 1.38629 0.02760 4.00716 4.70649 0.80665 0.59123 0.61404 0.77906 27 0.87910 1.99040 1.35484 1.65959 44 a = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 28 1.29192 2.71975 0.54513 2.53072 45 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 29 1.15473 2.82707 0.62909 2.37949 46 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 30 2.09492 3.21471 0.23566 3.06387 47 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 31 4.14711 0.11267 3.97297 2.63212 48 C = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 32 4.59039 0.03686 4.99446 3.94955 49 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03005 3.87872 4.71870 0.71475 0.67200 1.09861 0.40547 33 4.19130 3.94093 4.74427 0.04422 51 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 34 4.19130 3.94093 4.74427 0.04422 52 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 35 4.59039 0.03686 4.99446 3.94955 53 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 36 0.02888 4.86428 4.48153 4.66375 54 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 37 0.03875 4.65669 4.05278 4.49745 55 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 38 0.12873 3.37615 3.59549 2.82745 56 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 39 2.80134 3.90848 0.10727 3.86711 57 G = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 40 3.28125 0.24656 2.99158 2.03467 58 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 41 2.58328 0.55104 2.63400 1.28614 59 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 42 2.81834 0.60034 2.49333 1.17430 60 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 43 1.94355 1.44506 1.69882 0.82514 61 u = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 44 0.36126 1.96032 2.98355 2.19124 62 A + - , 1.38629 1.38629 1.38629 1.38629 0.06419 4.71870 2.93284 1.46634 0.26236 1.09861 0.40547 45 0.10992 3.64171 3.11767 3.39251 63 A + - , 1.38629 1.38629 1.38629 1.38629 1.67763 4.67337 0.21835 1.46634 0.26236 2.07502 0.13416 46 1.80805 1.30439 1.07542 1.49819 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 47 1.80293 1.30596 1.07732 1.49717 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 48 1.80052 1.30670 1.07822 1.49668 66 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 49 1.79943 1.30703 1.07862 1.49646 67 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 50 1.79900 1.30716 1.07878 1.49638 68 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 51 1.79888 1.30720 1.07883 1.49635 69 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 52 1.79892 1.30719 1.07881 1.49636 70 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.63787 0.07420 53 1.56803 2.22816 0.65110 1.81801 71 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07508 3.31971 3.31971 1.46634 0.26236 4.47015 0.01151 54 1.00260 1.80390 1.86309 1.16081 72 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07508 3.31971 3.31971 1.46634 0.26236 4.47015 0.01151 55 0.54053 2.16914 1.99108 1.79134 73 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07508 3.31971 3.31971 1.46634 0.26236 4.47015 0.01151 56 0.54053 2.16914 1.99108 1.79134 74 A + - _ 1.38629 1.38629 1.38629 1.38629 0.32398 3.31971 1.42474 1.46634 0.26236 4.47015 0.01151 57 1.73019 1.22024 1.16213 1.53819 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 58 1.73011 1.22027 1.16216 1.53817 76 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 59 1.73012 1.22026 1.16215 1.53817 77 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 60 1.73029 1.22019 1.16209 1.53822 78 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 61 1.73074 1.22000 1.16193 1.53835 79 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 62 1.73168 1.21960 1.16158 1.53863 80 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 63 1.73350 1.21882 1.16092 1.53917 81 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02173 3.83969 64 0.98608 3.43289 0.60808 2.99022 82 G + - , 1.38629 1.38629 1.38629 1.38629 0.04549 3.33686 4.71870 0.44360 1.02644 1.09861 0.40547 65 2.06954 0.73391 3.01348 1.06535 84 c + - , 1.38629 1.38629 1.38629 1.38629 0.04099 4.71870 3.46615 1.46634 0.26236 1.09861 0.40547 66 0.54179 3.33209 1.18496 2.56637 85 A = - < 1.38629 1.38629 1.38629 1.38629 0.01843 4.69613 4.69613 1.46634 0.26236 0.45207 1.01146 67 1.14232 2.54082 0.71638 2.17505 86 g = - < 1.38629 1.38629 1.38629 1.38629 0.02770 4.71870 3.99580 1.46634 0.26236 1.09861 0.40547 68 1.48842 2.79253 0.48220 2.34778 87 G = - < 1.38629 1.38629 1.38629 1.38629 0.06655 4.70919 2.89369 1.46634 0.26236 1.40128 0.28274 69 0.99466 1.80209 1.43208 1.48551 88 a = - < 1.38629 1.38629 1.38629 1.38629 0.14498 4.66172 2.07536 1.46634 0.26236 1.57373 0.23227 70 1.81778 2.45081 0.40679 2.45798 89 G = - < 1.38629 1.38629 1.38629 1.38629 0.14501 4.54801 2.08426 1.46634 0.26236 0.68753 0.69880 71 1.60249 2.27569 2.73800 0.46016 90 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05731 3.10225 4.53306 1.11638 0.39670 0.62075 0.77120 72 1.81211 2.16203 1.09946 0.94533 94 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03438 4.64302 3.72269 1.46634 0.26236 0.24220 1.53664 73 0.37893 1.91227 2.75851 2.26069 95 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02100 4.70148 4.44793 1.46634 0.26236 0.73821 0.65002 74 0.36239 2.52250 2.01692 2.40055 96 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06623 3.56639 3.32911 0.54786 0.86318 0.73214 0.65562 75 0.28246 2.49256 3.07214 2.14515 98 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05399 4.69171 3.13766 1.46634 0.26236 1.78886 0.18290 76 0.71850 1.70495 1.92835 1.68553 99 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09500 3.58262 2.76737 0.58287 0.81711 2.21608 0.11545 77 2.25374 1.30709 2.97928 0.55589 101 U + - _ 1.38629 1.38629 1.38629 1.38629 0.12911 3.76247 2.32386 0.71460 0.67214 0.42801 1.05499 78 2.47681 0.48517 2.32986 1.59413 103 C = - > 1.38629 1.38629 1.38629 1.38629 0.02021 4.60457 4.60457 1.46634 0.26236 0.48881 0.95026 79 1.64555 1.53703 1.60488 0.93864 104 u = - > 1.38629 1.38629 1.38629 1.38629 0.02937 3.92701 4.68390 0.76778 0.62370 1.06088 0.42488 80 2.83675 0.52888 2.59342 1.28244 106 C = - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69643 4.69643 1.46634 0.26236 1.69868 0.20202 81 2.61871 0.82213 2.31392 0.94486 107 c = - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69643 4.69643 1.46634 0.26236 0.45547 1.00553 82 2.64173 1.31534 3.08403 0.48677 109 U = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 83 0.04096 5.24122 3.63622 4.76954 110 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 84 1.23310 2.57908 0.62403 2.33317 111 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 85 2.40068 0.91684 2.19808 0.91993 112 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 86 2.54976 0.75409 2.47929 1.00060 113 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 87 2.86949 0.70386 2.53590 0.99584 114 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 88 2.59132 0.40230 2.79601 1.63350 115 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 89 4.58653 2.88522 4.47530 0.08058 116 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 90 2.79727 3.54821 0.16354 2.79497 117 G + - : 1.38629 1.38629 1.38629 1.38629 0.00905 4.70973 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Tyr STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:14:00 2015 COM [1] cmbuild --hand --enone Tyr-final-vert.cm ../Tyr-2nd-align.sto COM [2] cmcalibrate --seed 208 Tyr-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 2768569377 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.9771 0.71869 ECMLC 0.59681 -8.55097 1.50862 1600000 485902 0.002470 ECMGC 0.32205 -48.50731 -33.96330 1600000 43278 0.009243 ECMLI 0.60674 -8.05088 1.77526 1600000 466025 0.002575 ECMGI 0.32684 -45.48846 -31.24039 1600000 42121 0.009496 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 123 -15.012 -16.257 -0.258 -2.610 IL 1 1 2 1 4 24 46 101 125 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 25 47 102 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - A - + MR 3 2 3 5 5 26 47 100 124 -14.803 -0.000 -14.618 -14.831 -15.722 1.975 -5.397 -10.458 -4.461 D 4 2 3 5 5 21 43 99 123 -13.036 -0.007 -8.042 -12.094 -10.088 IR 5 5 3 5 5 19 39 100 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 G C = = MP 6 5 3 10 6 26 47 99 123 -15.994 -15.933 -0.000 -14.710 -14.989 -15.384 -13.750 -10.557 -15.462 -1.501 -15.473 -11.779 -9.852 -15.152 -11.913 3.951 -12.127 -2.469 -10.192 -12.224 -12.266 -14.311 ML 7 5 3 10 6 18 38 98 121 -7.112 -7.458 -0.574 -1.867 -7.308 -4.838 -0.294 -1.254 1.092 -0.660 MR 8 5 3 10 6 18 37 97 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 33 95 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 38 99 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 39 98 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 G C = = MP 12 11 6 16 6 26 45 97 121 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.042 -10.694 -12.238 -1.850 -14.371 -15.385 -9.821 -12.282 -11.792 3.160 -12.457 2.687 -2.119 -13.513 -11.656 -3.180 ML 13 11 6 16 6 18 37 95 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 37 95 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 33 93 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 38 97 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 38 96 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 U A = = MP 18 17 6 22 6 25 43 95 119 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.728 -5.081 -12.508 -2.469 -11.630 -12.468 -9.537 -12.588 -11.732 3.772 -2.774 0.585 -1.624 ML 19 17 6 22 6 17 36 93 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 36 93 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 32 91 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 38 95 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 18 38 94 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 A U = = MP 24 23 6 28 6 23 41 93 117 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -2.783 -12.232 3.955 -14.373 -15.528 -9.831 -12.275 -11.792 -2.429 -12.462 -3.874 -9.756 -13.537 -11.662 -3.562 ML 25 23 6 28 6 17 36 91 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 36 91 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 14 32 89 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 37 93 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 18 37 92 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 A U = = MP 30 29 6 34 6 21 39 91 115 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.397 -5.097 -10.514 3.282 -11.757 -11.303 -3.878 -11.088 -4.630 2.143 -4.599 0.515 -7.092 -10.511 -2.411 -9.419 ML 31 29 6 34 6 17 35 90 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 35 89 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 32 87 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 18 36 91 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 90 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 G C = = MP 36 35 6 40 6 19 37 89 113 -15.995 -15.934 -0.011 -7.084 -14.990 -15.385 -10.083 -3.881 -9.911 2.596 -11.057 -10.532 -6.126 -10.584 -10.324 3.009 -3.654 -0.224 -1.798 -9.784 -0.789 -5.802 ML 37 35 6 40 6 17 35 88 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 34 88 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 32 86 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 35 89 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 35 88 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 A U = = MP 42 41 6 46 4 17 35 87 111 -15.207 -15.414 -0.000 -13.828 -12.026 -10.686 -12.221 3.556 -14.363 -15.517 -9.820 -12.264 -11.781 1.070 -3.491 0.965 -9.745 -13.527 -11.651 -3.366 ML 43 41 6 46 4 16 34 86 110 -7.020 -7.203 -0.045 -5.932 -1.811 -4.226 1.841 -3.680 MR 44 41 6 46 4 15 33 86 110 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 31 85 109 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 34 88 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 34 87 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 15 33 85 109 -16.127 -0.000 -14.781 -9.405 -5.670 -5.145 1.982 D 49 47 6 50 3 13 31 84 107 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 33 86 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - + - ML 51 50 3 53 2 14 32 84 108 -16.782 -0.000 -2.409 -12.415 1.930 -11.396 D 52 50 3 53 2 13 31 83 107 -8.445 -0.004 IL 53 53 3 53 2 14 32 85 108 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 31 83 107 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 12 49 71 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 12 49 71 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 31 53 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 28 G C = = MP 58 57 1 62 6 2 3 31 53 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.234 -10.670 -12.491 -1.808 -14.522 -13.810 -9.835 -12.525 -11.814 3.809 -12.394 0.653 -9.827 -13.188 -11.755 -3.030 ML 59 57 1 62 6 1 1 29 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 29 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 31 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 30 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G = = MP 64 63 6 68 6 2 3 29 51 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -10.714 -12.508 3.957 -11.630 -12.468 -9.537 -12.588 -11.733 -2.376 -12.881 -1.875 -11.270 ML 65 63 6 68 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 29 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 U A = = MP 70 69 6 74 6 2 3 27 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -2.742 -12.508 2.376 -11.630 -12.468 -9.537 -12.588 -11.733 3.115 -12.881 0.996 -11.270 ML 71 69 6 74 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 26 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 27 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 26 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 G A = = MP 76 75 6 80 4 2 3 25 47 -15.218 -15.425 -0.000 -13.839 -12.097 -10.798 -12.242 -7.110 -3.718 -14.872 -9.002 -12.210 3.869 -3.097 -1.578 -0.395 -3.559 -13.472 -10.908 -10.861 ML 77 75 6 80 4 1 1 25 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 45 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 23 45 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 83 81 6 84 3 0 0 22 43 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - + - ML 85 84 3 87 3 1 1 22 44 -16.127 -0.720 -1.348 -0.790 -4.612 1.600 -1.516 D 86 84 3 87 3 0 0 21 43 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 21 43 -15.408 -3.678 -0.117 -0.612 -0.924 -1.311 1.272 D 89 87 3 90 3 0 0 20 42 -16.199 -11.712 -0.000 IL 90 90 3 90 3 1 1 22 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 18 40 -11.731 -4.835 -0.052 -5.046 -4.880 -0.528 1.697 D 92 90 3 93 3 0 0 20 42 -17.476 -0.822 -1.203 IL 93 93 3 93 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - G - + - ML 94 93 3 96 3 1 2 21 43 -15.239 -0.000 -13.894 -0.473 -4.606 1.582 -2.031 D 95 93 3 96 3 0 0 16 37 -16.425 -5.363 -0.036 IL 96 96 3 96 3 1 1 23 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 97 96 3 99 3 1 1 20 42 -15.269 -0.333 -2.279 -0.594 -1.158 -0.329 1.066 D 98 96 3 99 3 0 0 12 34 -16.390 -9.161 -0.003 IL 99 99 3 99 3 1 1 22 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 19 41 -2.777 -0.228 -13.592 -1.639 -1.610 -2.011 1.634 D 101 99 3 102 3 0 0 7 29 -16.714 -0.001 -11.106 IL 102 102 3 102 3 1 1 21 42 -1.223 -0.809 -10.382 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 -0.409 -1.706 -1.903 1.419 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 26 45 -6.056 -0.022 -14.876 -15.088 -15.980 0.281 -4.018 1.432 -5.335 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.936 -0.037 -7.614 -9.447 -8.720 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 g u = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.227 -3.329 -5.834 -2.821 -2.733 -8.571 -2.052 -4.388 1.027 1.201 -8.361 2.223 2.169 -6.157 -2.125 0.530 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 U A = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.337 -10.041 -10.333 -0.487 -6.589 -3.508 1.194 -9.849 -10.193 -2.554 -10.703 -4.309 3.373 -10.518 -0.165 0.504 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 G C = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.220 -5.054 -12.472 2.771 -14.511 -13.876 -9.833 -12.506 -11.812 3.146 -12.398 -1.803 -9.821 -13.208 -11.748 -11.076 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.471 -6.127 -14.624 0.853 -15.326 -11.911 -9.850 -14.478 -11.902 3.806 -12.156 -2.410 -10.145 -12.308 -12.197 -13.344 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 g c = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -4.376 1.231 -9.787 2.610 -10.918 -5.221 -5.984 -2.842 -10.224 2.625 -10.471 -0.531 -2.221 -2.450 -7.992 -4.339 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -12.982 1.009 -14.348 0.990 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.668 -4.720 -13.814 1.986 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 0.674 -11.146 1.265 -11.003 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - c - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.756 0.778 -9.471 -0.749 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 50 73 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 6 52 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 5 50 73 -16.127 -0.005 -8.111 1.043 -2.480 -0.382 -0.011 D 167 165 2 168 3 0 4 48 72 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - g - + - ML 169 168 3 171 2 1 4 49 72 -16.777 -0.000 -0.649 -1.015 0.595 0.440 D 170 168 3 171 2 0 3 48 71 -9.098 -0.003 IL 171 171 3 171 2 1 5 50 73 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 48 71 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 36 59 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 39 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - A - + - ML 231 230 2 233 3 1 4 36 59 -5.488 -0.033 -14.781 1.979 -11.578 -5.630 -4.727 D 232 230 2 233 3 0 0 34 58 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 36 59 -5.425 -0.039 -8.125 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - C - + - ML 234 233 3 236 5 1 4 35 58 -15.061 -0.003 -8.989 -15.088 -15.980 -5.071 1.530 -2.329 -0.179 D 235 233 3 236 5 0 0 34 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 35 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 93 A U = = MP 237 236 3 241 6 2 4 34 57 -15.992 -6.334 -0.018 -14.708 -14.987 -15.382 -12.034 -10.694 -12.229 3.679 -14.370 -15.525 -9.828 -12.272 -11.789 1.331 -12.459 -0.582 -9.753 -13.534 -11.659 -10.828 ML 238 236 3 241 6 1 1 32 55 -8.262 -8.608 -3.322 -0.192 -8.457 -5.987 -1.720 -2.961 1.753 -2.348 MR 239 236 3 241 6 1 1 32 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 33 56 -5.688 -0.044 -9.199 -7.367 -8.473 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 91 G C = = MP 243 242 6 247 6 2 4 32 55 -15.992 -15.931 -0.000 -14.708 -14.987 -15.382 -9.961 -6.604 -9.780 1.078 -10.911 -10.375 -2.703 -10.470 -10.218 3.665 -10.464 -0.473 -3.244 -3.181 -4.288 -4.353 ML 244 242 6 247 6 1 1 30 54 -8.262 -8.608 -3.322 -0.192 -8.457 -5.987 -1.720 -2.961 1.753 -2.348 MR 245 242 6 247 6 1 1 30 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 31 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 90 A U = = MP 249 248 6 253 6 2 2 30 53 -15.992 -15.931 -0.037 -14.708 -14.987 -5.327 -12.034 -2.622 -12.229 3.563 -14.370 -15.524 -9.828 -12.272 -3.295 1.417 -12.459 0.185 -9.753 -13.534 -11.659 -3.244 ML 250 248 6 253 6 1 1 29 52 -8.262 -8.608 -0.231 -3.016 -8.457 -5.987 1.746 -2.504 -2.122 -2.059 MR 251 248 6 253 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 26 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 30 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 29 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 89 G C = = MP 255 254 6 259 6 2 2 28 51 -15.958 -15.898 -0.094 -7.855 -10.049 -4.109 -13.612 -10.526 -15.082 -0.728 -15.385 -11.787 -9.816 -14.849 -3.479 3.912 -12.101 -2.003 -10.140 -12.216 -12.206 -13.868 ML 256 254 6 259 6 1 1 27 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 27 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 24 47 -14.715 -13.414 -9.211 -9.893 -9.910 -0.006 IL 259 259 5 259 6 1 1 28 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 88 G C = = MP 261 260 6 265 4 2 2 26 50 -15.087 -15.294 -0.180 -3.091 -13.567 -3.972 -15.142 -0.863 -15.307 -11.668 -1.761 -14.882 -11.781 3.903 -12.000 -2.896 -10.047 -12.104 -12.115 -13.960 ML 262 260 6 265 4 1 1 25 48 -6.318 -6.500 -1.800 -0.537 -0.064 -2.532 1.390 -2.004 MR 263 260 6 265 4 1 1 26 49 -6.074 -5.103 -0.491 -2.031 -0.801 1.226 -1.571 -0.414 D 264 260 6 265 4 0 0 24 47 -11.829 -11.510 -2.431 -0.297 IL 265 265 5 265 4 1 1 28 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 1 24 48 -5.374 -0.038 -9.003 -1.854 -3.922 -3.300 1.830 D 268 266 6 269 3 0 0 23 47 -15.051 -0.176 -3.125 IL 269 269 3 269 3 1 1 24 48 -5.270 -0.044 -7.970 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 23 47 -16.096 -0.003 -8.831 -3.215 -2.779 -1.177 1.724 D 271 269 3 272 3 0 0 22 45 -12.041 -0.301 -2.410 IL 272 272 3 272 3 1 1 25 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - U - + - ML 273 272 3 275 3 1 1 22 46 -16.118 -0.000 -14.772 0.014 -0.180 -3.352 1.007 D 274 272 3 275 3 0 0 20 44 -10.254 -3.151 -0.174 IL 275 275 3 275 3 1 1 24 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 21 45 -5.089 -0.094 -4.880 1.353 -4.158 0.277 -2.487 D 277 275 3 278 3 0 0 20 44 -10.111 -0.066 -4.503 IL 278 278 3 278 3 1 1 21 45 -5.795 -0.030 -8.495 0.000 0.000 0.000 0.000 [ MATL 72 ] 82 - A - + - ML 279 278 3 281 3 1 1 20 44 -16.078 -0.039 -5.234 1.852 -2.883 -3.855 -2.426 D 280 278 3 281 3 0 0 15 39 -12.672 -4.602 -0.061 IL 281 281 3 281 3 1 1 22 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 83 - G - + - ML 282 281 3 284 3 1 1 19 43 -4.045 -0.140 -4.965 -0.602 -1.948 1.044 0.028 D 283 281 3 284 3 0 0 10 33 -13.450 -3.320 -0.152 IL 284 284 3 284 3 1 1 22 45 -1.141 -0.874 -10.284 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.098 -0.713 -3.823 1.626 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Tyr LENG 90 MAXL 168 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:14:00 2015 COM [1] cmbuild --hand --enone Tyr-final-vert.cm ../Tyr-2nd-align.sto NSEQ 1085 EFFN 7.090015 CKSUM 2768569377 STATS LOCAL MSV -9.0656 0.71869 STATS LOCAL VITERBI -9.5156 0.71869 STATS LOCAL FORWARD -3.5354 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39706 1.56758 1.27889 1.32507 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 0.00000 * 1 3.02829 4.29453 0.08040 4.18592 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 2 2.12484 3.01440 0.27176 2.66740 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 3 3.06798 2.33625 2.93443 0.21861 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 4 0.06101 4.87549 3.22562 4.43737 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 5 0.98261 2.59171 0.77516 2.40632 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 6 1.28431 2.62796 0.60418 2.25942 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 7 0.56278 3.23385 1.08198 2.95563 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 8 3.22972 3.07575 3.58220 0.12052 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 9 2.88261 4.37917 0.09120 3.98251 9 G + - , 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 10 2.17462 3.10039 0.24344 2.85786 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 11 4.28871 0.10559 4.16910 2.64483 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 12 2.99824 1.04978 2.76601 0.62139 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 13 2.81939 2.87068 0.18717 2.91151 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 14 0.03649 4.62882 4.25477 4.43375 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 15 1.75006 2.86798 0.42765 2.14232 15 G + - _ 1.38629 1.38629 1.38629 1.38629 0.39447 4.59203 1.15255 1.46634 0.26236 1.09861 0.40547 16 1.48653 1.75014 1.97792 0.77276 16 u + - _ 1.38629 1.38629 1.38629 1.38629 1.06941 4.22718 0.44286 1.46634 0.26236 3.50167 0.03061 17 1.37179 1.70000 1.62053 1.00547 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.24365 3.23939 1.73130 1.46634 0.26236 0.58607 0.81308 18 1.52860 2.56497 0.55263 2.03407 18 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03206 4.14936 4.14936 1.46634 0.26236 3.03050 0.04950 19 1.42382 1.78829 1.68392 0.90062 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.18269 4.16267 1.88777 1.46634 0.26236 3.57308 0.02847 20 1.76018 1.90031 2.21680 0.56298 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13288 2.24023 4.01759 0.70959 0.67697 0.04433 3.13826 21 1.52176 2.03173 2.21071 0.61444 24 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 22 0.29244 2.86343 2.53204 2.14563 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 23 0.82552 2.93823 0.80818 2.75881 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 24 3.03637 4.29318 0.08263 4.03776 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 25 3.17174 0.35840 2.89650 1.58933 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 26 1.23711 2.95882 0.52410 2.72100 29 G + - , 1.38629 1.38629 1.38629 1.38629 0.03247 3.82517 4.59203 0.76123 0.62941 1.09861 0.40547 27 1.78868 1.70745 1.12053 1.12275 31 g = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 28 2.06577 1.40991 2.00962 0.70305 32 u = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 29 1.10123 3.22848 0.54356 3.05238 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 30 2.16656 3.80909 0.17707 3.66746 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 31 1.11129 2.43294 0.74848 2.20725 35 g = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 32 2.76610 0.80844 3.39914 0.78058 36 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 33 3.65772 3.28814 4.18421 0.08159 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 34 3.99413 5.01105 0.03681 4.50523 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 35 3.95856 3.72977 4.50712 0.05564 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 36 0.03649 4.62882 4.25477 4.43375 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 37 0.95665 3.40986 0.62220 3.07885 41 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 38 1.00941 1.07141 2.61941 1.51325 42 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 39 2.48387 0.73301 2.27816 1.09768 43 c = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 40 3.87749 0.20679 3.63672 1.96776 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 41 3.30317 0.61303 3.03384 0.98512 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 42 0.91238 2.16940 1.20899 1.68369 46 a = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 43 1.22670 1.69147 1.50155 1.20494 47 u = - > 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 44 0.86415 2.13834 1.65839 1.30824 48 a + - , 1.38629 1.38629 1.38629 1.38629 0.02332 4.59203 4.34894 1.46634 0.26236 1.09861 0.40547 45 1.46488 1.84498 1.23250 1.14161 49 u + - , 1.38629 1.38629 1.38629 1.38629 1.59351 4.58924 0.24000 1.46634 0.26236 1.18638 0.36431 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 47 1.80298 1.30594 1.07730 1.49718 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 48 1.80061 1.30667 1.07818 1.49670 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 49 1.79954 1.30700 1.07858 1.49649 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 50 1.79912 1.30712 1.07874 1.49640 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 51 1.79902 1.30716 1.07878 1.49638 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 52 1.79907 1.30714 1.07876 1.49639 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 57 1.73033 1.22018 1.16208 1.53823 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 58 1.73024 1.22021 1.16211 1.53821 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 59 1.73024 1.22021 1.16211 1.53821 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 60 1.73039 1.22015 1.16205 1.53825 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 61 1.73082 1.21997 1.16190 1.53838 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 62 1.73173 1.21958 1.16157 1.53865 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.37820 0.01263 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02542 3.68506 64 0.06207 4.15648 3.77525 3.83578 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.03832 3.59478 4.59203 0.62352 0.76798 1.09861 0.40547 65 2.47207 0.51101 2.69415 1.39393 70 C + - , 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 66 0.37284 3.91208 1.32905 3.63068 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 67 1.70545 2.66189 0.40916 2.47358 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 68 0.62161 3.01657 1.04600 2.77083 73 A = - < 1.38629 1.38629 1.38629 1.38629 0.04051 4.59203 3.52111 1.46634 0.26236 1.09861 0.40547 69 2.68587 3.92364 0.11688 3.79982 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.06875 4.57241 2.88055 1.46634 0.26236 1.59292 0.22732 70 2.53875 3.35244 0.15567 3.50019 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.12048 4.52555 2.27615 1.46634 0.26236 1.43219 0.27284 71 2.25604 2.56930 2.88257 0.27095 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04377 3.51796 4.33001 0.66353 0.72367 0.24009 1.54437 72 2.38781 2.44567 2.28223 0.32928 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02254 4.57504 4.42464 1.46634 0.26236 0.67920 0.70729 73 1.34208 1.51535 2.35269 0.85836 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02057 4.58735 4.58735 1.46634 0.26236 1.19644 0.35992 74 0.59750 2.66069 1.33025 2.15844 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07208 3.41113 3.30927 0.53259 0.88451 0.88106 0.53502 75 0.23089 2.70982 2.89228 2.47487 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04219 4.56542 3.47672 1.46634 0.26236 1.62689 0.21883 76 1.49439 2.11779 0.92843 1.34653 83 g + - _ 1.38629 1.38629 1.38629 1.38629 0.09684 2.86248 3.34747 0.75840 0.63189 1.64471 0.21452 77 2.17165 1.82358 2.81819 0.40819 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.08795 4.52567 2.61235 1.46634 0.26236 0.36047 1.19518 78 3.71801 0.18047 3.22393 2.29221 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.02196 4.52280 4.52280 1.46634 0.26236 0.52438 0.89629 79 3.85393 0.14824 3.75986 2.37204 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02245 4.57241 4.43372 1.46634 0.26236 0.52199 0.89977 80 2.99874 1.27156 2.81660 0.49438 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.02050 4.59052 4.59052 1.46634 0.26236 1.14701 0.38212 81 2.79572 0.48851 2.46456 1.42569 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.03043 3.92063 4.59052 0.82723 0.57494 1.14701 0.38212 82 3.83871 1.59335 3.69404 0.28720 93 U = - > 1.38629 1.38629 1.38629 1.38629 0.02638 4.59052 4.14196 1.46634 0.26236 1.00833 0.45386 83 3.26924 1.49165 2.96661 0.37763 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02059 4.58628 4.58628 1.46634 0.26236 0.82290 0.57831 84 2.64551 0.71287 2.27304 1.09124 95 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 85 2.68469 0.94486 2.34221 0.80540 96 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 86 4.77356 3.51716 4.70071 0.04837 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 87 0.28568 3.05782 1.97319 2.77272 98 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02047 4.59203 4.59203 1.46634 0.26236 1.09861 0.40547 88 2.95108 0.65972 2.82643 0.99021 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02089 4.59203 4.55269 1.46634 0.26236 1.09861 0.40547 89 4.40434 0.09717 4.22531 2.72188 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.15934 4.59162 1.98660 1.46634 0.26236 1.11190 0.39889 90 0.08280 3.73773 3.66038 3.50888 101 A + - : 1.38629 1.38629 1.38629 1.38629 0.01182 4.44410 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Val STATES 289 NODES 76 CLEN 90 W 108 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:14:01 2015 COM [1] cmbuild --hand --enone Val-final-vert.cm ../Val-2nd-align.sto COM [2] cmcalibrate --seed 208 Val-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 2820005377 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4953 0.71857 ECMLC 0.67600 -7.01674 2.21552 1600000 616024 0.001948 ECMGC 0.29122 -43.33514 -27.38477 1600000 41630 0.009608 ECMLI 0.69151 -6.23492 2.68088 1600000 571147 0.002101 ECMGI 0.30269 -38.91957 -23.70749 1600000 39975 0.010006 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 108 151 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 18 39 109 152 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 41 109 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 117 - A - + MR 3 2 3 5 5 25 47 108 151 -15.061 -0.000 -14.876 -15.088 -15.980 1.954 -4.287 -10.310 -3.748 D 4 2 3 5 5 15 35 106 149 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 39 108 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 116 C G = = MP 6 5 3 10 6 25 47 107 150 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.045 -13.326 -5.779 -3.392 -3.769 -12.508 3.905 -11.629 -12.467 -9.534 -4.184 -11.729 -0.461 -12.880 -5.304 -5.264 ML 7 5 3 10 6 17 37 105 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 37 105 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 33 101 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 38 106 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 106 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 115 A U = = MP 12 11 6 16 6 25 45 105 148 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -6.484 -12.232 3.919 -14.372 -15.527 -3.016 -5.564 -11.792 -1.049 -12.462 -2.581 -9.755 -13.537 -11.661 -3.874 ML 13 11 6 16 6 17 37 103 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 37 103 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 14 33 99 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 38 104 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 38 104 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 114 A U = = MP 18 17 6 22 6 24 43 103 146 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.651 -2.332 -10.534 3.187 -11.781 -11.330 -6.875 -3.409 -10.798 2.550 -11.139 -2.067 -1.304 -3.976 -8.871 -5.388 ML 19 17 6 22 6 16 37 101 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 36 101 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 33 97 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 38 102 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 38 102 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 113 g c = = MP 24 23 6 28 6 22 41 101 144 -15.995 -6.493 -0.016 -14.710 -14.990 -15.385 -1.754 0.994 -2.125 2.662 -4.094 -4.848 -2.715 -10.472 -10.220 2.693 -10.466 -1.704 -4.787 -4.410 -4.945 -5.806 ML 25 23 6 28 6 16 36 99 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 36 99 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 32 95 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 100 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 40 100 143 -5.548 -0.048 -9.060 -7.227 -8.333 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 111 a u = = MP 30 29 6 34 6 20 39 99 142 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.340 -1.358 -9.782 2.903 -5.302 -6.658 -2.209 -5.589 -10.220 2.844 -10.466 -1.524 -2.758 -5.194 -7.986 -4.294 ML 31 29 6 34 6 16 35 97 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 35 97 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 32 94 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 98 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 98 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 110 u a = = MP 36 35 6 40 6 18 37 97 140 -6.603 -6.359 -0.033 -14.710 -14.990 -15.385 -3.164 -6.463 -10.257 0.231 -0.172 -11.101 2.327 -9.794 -3.700 -3.181 -10.636 -5.917 2.950 -3.621 -0.437 -4.543 ML 37 35 6 40 6 15 35 95 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 34 95 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 32 92 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 36 96 139 -6.273 -6.535 -0.046 -8.191 -8.967 -8.627 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 96 139 -5.669 -0.045 -9.180 -7.347 -8.453 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 108 G C = = MP 42 41 6 46 4 16 35 95 138 -15.218 -4.559 -0.065 -9.088 -5.459 -6.172 -11.492 2.319 -12.868 -12.123 -7.972 -11.907 -11.340 3.416 -11.744 -3.149 -2.890 -4.635 -9.971 -10.318 ML 43 41 6 46 4 15 34 94 137 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 33 93 136 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 31 92 135 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 34 95 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 34 94 137 -6.310 -0.021 -9.010 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 14 33 93 136 -16.125 -0.000 -14.779 -5.946 -5.484 -6.345 1.982 D 49 47 6 50 3 12 31 91 134 -8.682 -4.195 -0.085 IL 50 50 3 50 3 14 33 93 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 13 32 92 135 -16.780 -0.000 1.850 -6.054 -1.397 -10.625 D 52 50 3 53 2 12 31 91 134 -8.805 -0.003 IL 53 53 3 53 2 13 32 92 135 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 31 91 134 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 52 75 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 52 75 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 34 57 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 11 31 G C = = MP 58 57 1 62 6 2 3 34 57 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.963 -3.928 -16.470 -2.156 -15.576 -2.701 -9.854 -15.844 -11.922 3.925 -12.110 -1.441 -10.223 -12.174 -12.312 -15.666 ML 59 57 1 62 6 1 1 32 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 32 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 29 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 33 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 33 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 C G = = MP 64 63 6 68 6 2 3 32 55 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -3.069 -12.364 -9.565 -10.714 -12.508 3.917 -3.971 -12.468 -9.537 -12.588 -11.733 -0.971 -12.881 -2.323 -11.270 ML 65 63 6 68 6 1 1 30 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 30 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 31 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 31 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 29 U A = = MP 70 69 6 74 6 2 3 30 53 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.683 -3.142 -12.508 -2.378 -11.630 -2.446 -9.536 -12.588 -11.731 3.938 -12.881 -5.177 -11.270 ML 71 69 6 74 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 28 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 29 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 29 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 28 U A = = MP 76 75 6 80 4 2 3 28 51 -15.218 -15.425 -0.000 -13.839 2.258 -1.705 -3.039 -0.493 -2.729 -5.551 -3.620 -11.628 0.474 -9.514 -12.585 -11.687 3.030 -12.877 -4.613 -2.171 ML 77 75 6 80 4 1 1 28 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 27 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 26 49 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 29 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 28 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 26 49 -16.127 -0.000 -14.781 1.800 -3.922 -6.185 -1.190 D 83 81 6 84 3 0 0 24 47 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 25 48 -16.127 -0.309 -2.376 1.569 -3.077 -0.382 -2.754 D 86 84 3 87 3 0 0 23 46 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - + - ML 88 87 3 90 3 1 1 24 47 -15.818 -1.061 -0.942 1.095 -0.146 -3.431 -0.206 D 89 87 3 90 3 0 0 22 45 -15.173 -10.686 -0.001 IL 90 90 3 90 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 23 47 -3.021 -0.395 -3.106 -1.812 0.629 -8.075 1.114 D 92 90 3 93 3 0 0 22 45 -16.841 -0.399 -2.048 IL 93 93 3 93 3 1 1 24 47 -1.442 -1.070 -2.685 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - A - + - ML 94 93 3 96 3 1 1 22 45 -15.796 -0.020 -6.184 1.717 -1.172 -2.799 -2.993 D 95 93 3 96 3 0 0 21 44 -15.261 -0.571 -1.613 IL 96 96 3 96 3 1 1 23 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - g - + - ML 97 96 3 99 3 1 1 21 44 -16.010 -0.807 -1.223 -0.435 0.085 0.557 -0.458 D 98 96 3 99 3 0 0 19 42 -13.868 -6.208 -0.020 IL 99 99 3 99 3 1 1 23 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - u - + - ML 100 99 3 102 3 1 1 20 44 -2.656 -0.249 -13.860 0.340 -0.002 -8.437 0.793 D 101 99 3 102 3 0 0 18 42 -3.785 -0.110 -10.855 IL 102 102 3 102 3 1 1 22 45 -1.147 -0.868 -11.316 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.850 -2.635 -9.541 -2.106 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - A - + - ML 109 108 2 111 5 1 1 26 45 -6.479 -0.016 -14.876 -15.088 -15.980 1.874 -3.644 -2.082 -5.703 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.554 -0.048 -7.233 -9.065 -8.339 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 50 U A = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.192 -10.038 -5.174 -2.170 1.157 -5.938 1.068 -2.255 -3.587 -2.962 -10.700 -7.607 3.428 -6.461 -3.455 -8.910 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 49 C G = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.043 -13.322 -12.362 -3.366 -6.897 -12.507 3.429 -5.365 -12.465 -9.527 -4.247 -11.721 2.319 -12.878 -4.307 -11.266 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 48 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.533 -13.328 -12.364 -9.564 -1.486 -12.508 2.086 -11.630 -12.467 -9.536 -12.587 -11.731 3.477 -4.209 -4.430 -3.847 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 47 c g = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.129 -2.905 -10.028 2.562 -9.766 -10.725 2.660 -10.100 -10.189 1.474 -10.570 -3.606 -0.550 -6.553 -5.751 -3.929 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 46 G C = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -9.977 -0.266 -9.796 0.396 -3.381 1.383 -3.839 0.927 -10.232 3.119 -10.479 -2.452 -6.260 -4.612 -8.002 -2.021 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -12.339 1.711 -13.091 -0.461 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.071 -1.539 -13.042 1.870 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -5.518 -5.848 -10.354 1.986 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -12.733 2.000 -13.620 -11.110 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.939 -11.038 -2.901 -4.942 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -1.967 1.894 -10.593 -5.249 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 57 100 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 3 59 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 2 57 100 -16.127 -0.003 -9.016 1.862 -2.616 -3.656 -3.041 D 167 165 2 168 3 0 1 56 99 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 58 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - G - + - ML 169 168 3 171 2 1 1 56 99 -16.780 -0.000 -1.361 -2.893 1.771 -4.013 D 170 168 3 171 2 0 0 55 98 -8.827 -0.003 IL 171 171 3 171 2 1 1 57 100 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 55 98 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 44 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 53 70 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 69 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 68 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 67 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 66 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 65 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 11 30 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 64 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 29 -15.431 -15.112 -4.555 -0.063 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - A - + - ML 216 215 6 218 3 1 1 13 32 -11.624 -0.002 -10.278 1.993 -7.755 -7.041 -7.184 D 217 215 6 218 3 0 0 7 26 -17.481 -12.994 -0.000 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.624 -0.002 -10.278 -7.620 -6.861 -8.610 1.994 D 220 218 3 221 3 0 0 6 25 -17.481 -12.994 -0.000 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.624 -4.727 -0.056 -7.620 -6.861 -8.610 1.994 D 223 221 3 224 3 0 0 5 24 -17.481 -12.994 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 51 94 -16.127 -0.021 -6.148 IL 230 230 2 230 3 1 1 52 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - A - + - ML 231 230 2 233 3 1 2 51 94 -6.945 -0.012 -14.761 1.762 -9.292 -4.310 -0.848 D 232 230 2 233 3 0 0 50 94 -0.038 -6.945 -5.824 IL 233 233 3 233 3 1 1 51 94 -5.412 -0.040 -8.112 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - U - + - ML 234 233 3 236 5 1 2 50 93 -15.061 -0.018 -14.876 -6.324 -15.980 -3.887 0.644 -5.977 1.235 D 235 233 3 236 5 0 0 48 91 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 50 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 74 106 A U = = MP 237 236 3 241 6 2 2 49 92 -15.977 -6.455 -0.017 -14.692 -14.972 -15.367 -5.210 -4.068 -9.698 3.014 -5.249 -5.454 -1.346 -2.286 -10.108 1.709 -10.378 -1.408 0.970 0.623 -5.304 -6.200 ML 238 236 3 241 6 1 1 46 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 48 91 -11.154 -9.883 -5.792 -9.861 -0.036 -8.075 -5.290 1.967 -5.784 -4.390 D 240 236 3 241 6 0 0 44 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 48 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 48 91 -5.566 -0.048 -9.078 -7.245 -8.351 0.000 0.000 0.000 0.000 [ MATP 64 ] 75 104 U A = = MP 243 242 6 247 6 2 2 46 90 -15.977 -15.916 -0.011 -7.300 -9.350 -15.367 -13.021 -3.909 -12.342 -9.531 -1.072 -2.931 2.388 -1.830 -12.445 -9.500 -12.566 -11.693 3.169 -4.229 -0.400 -11.246 ML 244 242 6 247 6 1 1 44 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 47 90 -11.154 -9.883 -5.792 -9.861 -0.036 -8.075 1.976 -5.833 -5.247 -5.482 D 246 242 6 247 6 0 0 42 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 46 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 46 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 76 103 C G = = MP 249 248 6 253 6 2 2 44 88 -6.577 -3.884 -0.181 -14.681 -5.060 -6.675 -13.000 -13.272 -3.536 0.050 -0.757 -12.474 3.566 -11.593 -12.427 -9.465 -12.550 -11.654 1.132 -12.839 -2.016 -11.227 ML 250 248 6 253 6 1 1 39 83 -9.684 -10.030 -2.335 -0.335 -9.880 -7.409 -4.250 1.931 -4.896 -3.322 MR 251 248 6 253 6 1 1 46 89 -11.308 -10.037 -5.946 -10.016 -0.032 -8.229 -3.612 -4.713 1.823 -1.545 D 252 248 6 253 6 0 0 40 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 39 82 -6.269 -6.532 -4.450 -0.111 -8.963 -8.624 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 46 89 -2.488 -2.171 -11.776 -0.739 -11.049 0.000 0.000 0.000 0.000 [ MATP 66 ] 78 100 c g = = MP 255 254 6 259 6 2 2 42 85 -15.815 -15.754 -0.332 -8.932 -4.643 -2.611 -3.638 -3.172 -7.437 2.021 -2.650 -3.991 2.902 -4.340 -4.467 -2.140 -8.070 -3.833 1.632 -4.277 -1.216 -3.852 ML 256 254 6 259 6 1 1 35 78 -10.905 -11.251 -5.965 -0.029 -11.101 -8.630 1.981 -6.203 -5.596 -5.811 MR 257 254 6 259 6 1 1 45 88 -13.980 -12.709 -8.617 -12.687 -0.167 -3.235 1.401 -5.823 -0.510 -0.647 D 258 254 6 259 6 0 0 37 80 -13.383 -12.082 -7.879 -8.561 -8.578 -0.014 IL 259 259 5 259 6 1 1 41 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 42 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 79 99 G C = = MP 261 260 6 265 4 2 2 39 82 -14.702 -5.037 -0.124 -4.266 -1.305 -0.494 -9.275 1.446 -0.439 -5.104 -0.662 -9.962 -9.712 3.300 -9.959 -5.735 -0.208 -9.130 -5.578 -8.240 ML 262 260 6 265 4 1 1 34 77 -8.157 -8.339 -0.665 -1.462 -1.968 1.821 -3.124 -3.386 MR 263 260 6 265 4 1 1 45 88 -12.353 -1.035 -3.366 -1.270 -0.682 1.474 -1.319 -2.341 D 264 260 6 265 4 0 0 37 80 -12.835 -5.222 -1.913 -0.499 IL 265 265 5 265 4 1 1 44 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 45 88 -0.616 -2.017 -3.316 0.000 0.000 0.000 0.000 [ MATL 68 ] 80 - U - + - ML 267 266 6 269 3 1 1 28 55 -4.084 -0.095 -7.680 -1.248 -0.639 -5.359 1.542 D 268 266 6 269 3 0 0 26 54 -15.444 -0.623 -1.513 IL 269 269 3 269 3 1 1 28 56 -2.276 -0.336 -9.417 0.000 0.000 0.000 0.000 [ MATL 69 ] 83 - g - + - ML 270 269 3 272 3 1 1 27 54 -15.999 -0.023 -5.956 -0.659 -1.921 0.929 0.261 D 271 269 3 272 3 0 0 26 53 -13.998 -0.200 -2.948 IL 272 272 3 272 3 1 1 28 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 84 - C - + - ML 273 272 3 275 3 1 1 26 53 -16.090 -0.001 -10.113 -0.418 1.557 -5.280 -1.818 D 274 272 3 275 3 0 0 24 52 -12.275 -0.774 -1.268 IL 275 275 3 275 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 85 - A - + - ML 276 275 3 278 3 1 1 25 52 -5.571 -0.117 -4.132 1.543 -1.036 -2.945 -1.093 D 277 275 3 278 3 0 0 23 50 -11.131 -1.128 -0.884 IL 278 278 3 278 3 1 1 25 52 -5.332 -0.042 -8.032 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 24 51 -16.034 -0.131 -3.531 1.749 -1.715 -5.236 -1.696 D 280 278 3 281 3 0 0 19 46 -13.554 -4.097 -0.087 IL 281 281 3 281 3 1 1 25 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - A - + - ML 282 281 3 284 3 1 1 23 50 -3.472 -0.238 -4.014 1.235 -0.146 -1.372 -1.487 D 283 281 3 284 3 0 0 10 38 -14.713 -5.664 -0.029 IL 284 284 3 284 3 1 1 26 53 -0.966 -1.148 -4.760 0.000 0.000 0.000 0.000 [ MATL 74 ] 93 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.267 0.366 -6.017 1.189 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Val LENG 90 MAXL 162 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:14:01 2015 COM [1] cmbuild --hand --enone Val-final-vert.cm ../Val-2nd-align.sto NSEQ 1085 EFFN 13.720608 CKSUM 2820005377 STATS LOCAL MSV -8.7718 0.71857 STATS LOCAL VITERBI -9.5549 0.71857 STATS LOCAL FORWARD -3.8327 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16072 1.41219 1.59385 1.42717 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 0.00000 * 1 4.13288 0.10186 4.07985 2.75049 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 2 0.05100 4.89167 3.35521 4.91895 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 3 0.88156 2.94750 0.77769 2.60468 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 4 0.93376 2.70841 0.76326 2.60179 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 5 1.00339 2.83340 0.67563 2.72239 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 6 2.01272 1.11045 2.20961 0.85045 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02188 4.18216 5.05553 0.69441 0.69189 1.09861 0.40547 7 1.31207 3.11290 0.46483 2.84689 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01437 5.05553 4.84116 1.46634 0.26236 1.09861 0.40547 8 3.56520 3.43440 4.03703 0.08141 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.01285 5.05401 5.05401 1.46634 0.26236 1.17529 0.36922 9 0.14538 4.02219 2.30067 4.06271 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01285 5.05401 5.05401 1.46634 0.26236 0.96092 0.48214 10 3.39613 4.22078 0.05892 4.70785 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 11 4.08118 0.10477 4.21416 2.69126 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 12 5.37950 4.31974 5.32681 0.02304 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 13 1.24996 1.91585 1.78747 0.91908 14 u = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 14 0.19843 3.16155 3.56612 2.21317 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 15 0.37136 2.86752 1.72109 2.59702 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.19680 5.05553 1.75868 1.46634 0.26236 1.09861 0.40547 16 0.78049 1.53829 2.50529 1.40479 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.59651 4.87414 0.81729 1.46634 0.26236 3.36824 0.03506 17 1.92823 1.12284 2.72650 0.76832 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.21588 2.31532 2.34932 0.48128 0.96232 0.29624 1.36104 18 0.28405 2.18290 2.79976 2.60732 21 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03959 4.87379 3.46818 1.46634 0.26236 0.39185 1.12642 19 1.47656 1.44552 1.18147 1.47347 22 g + - _ 1.38629 1.38629 1.38629 1.38629 0.45694 4.98624 1.02178 1.46634 0.26236 1.19730 0.35955 20 1.21865 1.42998 2.52281 0.95497 23 u + - _ 1.38629 1.38629 1.38629 1.38629 0.18207 1.85641 4.58263 0.59941 0.79659 0.03273 3.43587 21 0.16298 2.88529 3.75814 2.64187 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 22 0.64673 2.12517 1.71425 1.73312 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 23 0.02485 5.84393 4.17336 5.07602 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 24 2.98089 4.05230 0.09023 4.00903 30 G = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 25 4.78451 0.07545 4.59269 2.91528 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 26 0.14379 3.32510 2.66494 3.56272 32 A + - , 1.38629 1.38629 1.38629 1.38629 0.02264 4.13461 5.05553 0.66636 0.72067 1.09861 0.40547 27 2.30216 1.24255 2.23232 0.68512 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 28 3.44147 0.49280 3.27436 1.14185 35 C = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 29 2.88294 1.17635 2.68872 0.56623 36 U = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 30 1.24441 1.10063 1.44763 1.93724 37 c = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 31 1.75670 1.53666 0.63837 2.47535 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 32 3.86122 0.23703 4.52497 1.71949 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 33 3.84059 2.40783 4.35179 0.13282 40 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 34 3.75332 3.67038 4.44376 0.06258 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 35 0.01646 5.44492 5.03782 5.20015 42 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 36 5.06572 0.02282 5.40680 4.44229 43 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 37 0.07496 4.32452 3.22271 3.95623 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 38 2.88762 0.10003 4.61678 3.52025 45 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 39 2.79503 0.49391 2.54979 1.38409 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 40 2.14762 1.51842 1.03741 1.17181 47 g = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 41 0.58975 2.83290 1.14773 2.66883 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 42 1.20294 3.52000 0.46317 3.19888 49 G = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 43 0.59921 2.41655 1.42609 2.10965 50 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 44 0.16161 2.86733 3.24523 2.92956 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.01449 5.05553 4.82740 1.46634 0.26236 1.09861 0.40547 45 2.12366 3.00505 0.24443 3.04241 52 G + - , 1.38629 1.38629 1.38629 1.38629 2.05817 5.05390 0.14395 1.46634 0.26236 1.18058 0.36687 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 47 1.80282 1.30599 1.07736 1.49715 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 48 1.80035 1.30675 1.07828 1.49665 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 49 1.79922 1.30709 1.07870 1.49642 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 50 1.79875 1.30724 1.07888 1.49633 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 51 1.79861 1.30728 1.07893 1.49630 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 52 1.79863 1.30728 1.07892 1.49630 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.02034 0.05001 53 0.51824 2.20137 2.02175 1.82412 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07487 3.32240 3.32240 1.46634 0.26236 4.88402 0.00760 54 1.68216 1.83661 2.13059 0.62380 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07487 3.32240 3.32240 1.46634 0.26236 4.88402 0.00760 55 1.68216 1.83661 2.13059 0.62380 62 U + - _ 1.38629 1.38629 1.38629 1.38629 0.32667 3.32240 1.41630 1.46634 0.26236 4.88402 0.00760 56 1.13112 1.65303 1.51838 1.32128 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 57 1.72992 1.22035 1.16223 1.53811 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 58 1.72986 1.22037 1.16225 1.53810 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 59 1.72990 1.22036 1.16223 1.53811 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 60 1.73010 1.22027 1.16216 1.53817 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 61 1.73059 1.22006 1.16198 1.53831 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 62 1.73159 1.21963 1.16162 1.53861 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 63 1.73350 1.21882 1.16092 1.53917 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01461 4.23330 64 0.21654 3.48517 3.30698 2.06021 71 A + - , 1.38629 1.38629 1.38629 1.38629 0.01982 4.32337 5.05553 0.78426 0.60965 1.09861 0.40547 65 2.85600 1.01803 3.60229 0.59071 73 U + - , 1.38629 1.38629 1.38629 1.38629 0.02376 5.05553 4.06830 1.46634 0.26236 1.09861 0.40547 66 1.03379 2.06111 1.27264 1.43995 74 a = - < 1.38629 1.38629 1.38629 1.38629 0.01297 5.04474 5.04474 1.46634 0.26236 1.54411 0.24017 67 2.44411 1.06850 2.32491 0.75103 75 u = - < 1.38629 1.38629 1.38629 1.38629 0.01428 5.04474 4.86136 1.46634 0.26236 1.54411 0.24017 68 2.33393 0.47807 2.68883 1.53645 76 C = - < 1.38629 1.38629 1.38629 1.38629 0.10426 4.17160 2.48193 0.69532 0.69098 1.58618 0.22904 69 1.44764 1.02153 2.02514 1.29882 78 c = - < 1.38629 1.38629 1.38629 1.38629 0.20411 4.96318 1.72801 1.46634 0.26236 2.82379 0.06122 70 1.48996 2.10010 0.63887 2.08519 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.08541 4.77607 2.61141 1.46634 0.26236 0.97694 0.47235 71 2.05117 1.79969 3.14493 0.41099 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07111 2.87041 4.42605 0.42444 1.06171 0.47409 0.97405 72 1.57893 2.23035 0.92314 1.24119 83 g + - _ 1.38629 1.38629 1.38629 1.38629 0.02781 4.97940 3.88511 1.46634 0.26236 0.27282 1.43226 73 1.72975 0.41800 3.48237 2.01308 84 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01387 5.03330 4.92528 1.46634 0.26236 0.75514 0.63477 74 0.42271 2.03389 2.71945 1.91057 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08334 3.70879 2.89214 0.46183 0.99461 0.97555 0.47318 75 0.24703 2.43107 3.35528 2.34296 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09131 5.00024 2.51912 1.46634 0.26236 2.04489 0.13857 76 0.67629 1.57650 2.09151 1.82448 88 A + - _ 1.38629 1.38629 1.38629 1.38629 0.14705 2.55850 2.82468 0.81892 0.58144 2.36055 0.09912 77 1.97572 1.19549 3.09006 0.66693 93 U + - _ 1.38629 1.38629 1.38629 1.38629 0.22078 2.42035 2.21443 1.10025 0.40465 0.59601 0.80075 78 1.98024 0.66921 2.11681 1.47214 99 C = - > 1.38629 1.38629 1.38629 1.38629 0.01516 4.88961 4.88961 1.46634 0.26236 0.22265 1.61142 79 1.42508 2.15065 0.94291 1.37196 100 g = - > 1.38629 1.38629 1.38629 1.38629 0.07550 2.72985 4.89399 0.34447 1.23305 0.54845 0.86238 80 1.58732 2.86596 0.46052 2.22891 103 G = - > 1.38629 1.38629 1.38629 1.38629 0.01290 5.05013 5.05013 1.46634 0.26236 0.73397 0.65392 81 0.84034 2.40130 1.00827 2.18050 104 a = - > 1.38629 1.38629 1.38629 1.38629 0.02273 4.12866 5.05553 0.66293 0.72431 1.09861 0.40547 82 1.79656 1.22183 1.92686 0.93182 106 u = - > 1.38629 1.38629 1.38629 1.38629 0.05050 3.14943 5.05553 0.27468 1.42633 1.09861 0.40547 83 3.09529 0.51025 2.91963 1.20252 108 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02356 4.07995 5.05553 0.63542 0.75441 1.09861 0.40547 84 0.90768 2.37225 1.04218 1.89323 110 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 85 2.92882 0.72457 2.69265 0.93063 111 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02260 4.13715 5.05553 0.66784 0.71911 1.09861 0.40547 86 2.70690 0.69663 2.46531 1.04978 113 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 87 2.86041 0.83564 2.81868 0.79968 114 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 88 5.41687 3.71697 4.86072 0.03718 115 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 89 2.88844 4.37094 0.09160 3.95161 116 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 90 0.07096 3.73089 4.16717 3.53918 117 A + - : 1.38629 1.38629 1.38629 1.38629 0.00644 5.04914 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Lys.cm0000644000543100007160000017235512573631164021447 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Lys STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:37 2015 COM [1] cmbuild --hand --enone Lys_model.cm aligntRNAdb-Lys.sto COM [2] cmcalibrate --seed 208 Lys_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 259 EFFN 259.000000 CKSUM 36936522 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.5152 0.71872 ECMLC 0.59312 -8.17549 2.33797 1600000 612828 0.001958 ECMGC 0.33505 -43.64491 -28.96153 1600000 54779 0.007302 ECMLI 0.59885 -7.66196 2.61383 1600000 564515 0.002126 ECMGI 0.35433 -38.85465 -25.17350 1600000 50976 0.007847 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 127 -12.953 -14.199 -0.001 -10.652 IL 1 1 2 1 4 14 36 103 129 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 37 103 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - A - + MR 3 2 3 5 5 19 44 102 127 -13.004 -0.001 -12.820 -13.032 -13.923 1.760 -5.138 -0.970 -3.769 D 4 2 3 5 5 11 33 100 126 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 14 36 102 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 C G = = MP 6 5 3 10 6 20 44 101 126 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.987 -11.268 -10.305 -7.505 -8.655 -10.449 3.963 -9.571 -10.408 -7.477 -10.528 -9.670 -5.388 -10.821 -1.499 -9.210 ML 7 5 3 10 6 13 34 99 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 12 34 99 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 31 96 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 13 35 100 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 13 36 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 A U = = MP 12 11 6 16 6 20 42 99 124 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.977 -2.217 -10.172 3.872 -12.313 -13.468 -7.771 -1.849 -9.732 -1.278 -10.402 -1.192 -7.696 -11.477 -9.601 -8.770 ML 13 11 6 16 6 12 34 97 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 12 34 97 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 30 94 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 13 35 98 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 13 35 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 U A = = MP 18 17 6 22 6 19 41 97 122 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.986 -11.268 -10.304 -7.504 -2.621 -10.449 2.662 -9.570 -10.408 -7.475 -10.528 -9.670 3.154 -10.821 -0.779 -9.209 ML 19 17 6 22 6 12 34 95 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 34 95 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 30 92 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 13 35 96 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 13 35 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 U A = = MP 24 23 6 28 6 18 39 95 120 -5.708 -13.898 -0.029 -12.674 -12.954 -13.349 -10.986 -11.267 -10.304 -1.768 -2.164 -10.449 -0.337 -9.570 -10.408 -7.475 -10.528 -9.669 3.838 -10.821 -1.407 -9.209 ML 25 23 6 28 6 12 33 93 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 33 93 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 30 90 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 36 94 119 -5.258 -5.521 -0.095 -7.176 -7.952 -7.612 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 35 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 100 A U = = MP 30 29 6 34 6 16 37 93 118 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.978 -3.688 -10.173 3.418 -12.310 -13.394 -7.763 -10.217 -9.731 2.257 -10.399 -1.211 -7.691 -11.463 -9.596 -8.772 ML 31 29 6 34 6 12 33 91 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 33 91 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 30 89 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 34 92 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 34 92 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 99 A U = = MP 36 35 6 40 6 14 35 91 116 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -8.756 -3.041 -3.046 3.288 -1.763 -9.449 0.191 -8.200 -8.584 -4.134 -9.056 -2.413 1.891 -8.918 -0.777 -7.319 ML 37 35 6 40 6 11 32 90 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 32 89 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 29 87 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 33 90 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 33 90 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = MP 42 41 6 46 4 12 33 89 114 -13.158 -13.365 -0.001 -11.779 -11.278 -8.538 -12.228 1.114 -13.197 -9.960 -7.807 -12.132 -9.855 3.775 -10.134 -2.929 -8.074 -10.322 -10.113 -10.915 ML 43 41 6 46 4 10 31 88 114 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 30 88 113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 29 87 112 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 32 90 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 32 89 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 10 31 87 112 -14.068 -0.000 -12.722 1.882 -2.957 -4.406 -2.854 D 49 47 6 50 3 8 29 85 111 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 31 88 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 9 30 86 111 -14.721 -0.000 1.975 -9.733 -9.219 -3.915 D 52 50 3 53 2 8 29 85 110 -8.445 -0.004 IL 53 53 3 53 2 9 30 86 112 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 29 85 110 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 8 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 8 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 24 42 -0.001 -12.077 -11.484 -12.124 [ MATP 15 ] 11 27 G C = = MP 58 57 1 62 6 2 2 24 42 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -11.899 -8.517 -14.255 -5.996 -13.518 -9.677 -7.816 -13.695 -9.886 3.996 -10.077 -6.451 -8.183 -10.145 -10.267 -13.365 ML 59 57 1 62 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 C G = = MP 64 63 6 68 6 2 2 22 40 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.988 -11.268 -10.303 -7.505 -8.653 -10.446 3.979 -9.571 -10.409 -7.477 -10.525 -9.670 -5.389 -10.822 -2.410 -9.211 ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 U A = = MP 70 69 6 74 6 2 2 20 38 -13.958 -13.898 -0.071 -12.674 -5.605 -5.188 -12.407 -12.070 -12.287 -11.616 -10.480 -12.145 -10.946 -11.973 -10.382 -11.621 -12.483 -11.964 3.995 -10.478 -5.717 -5.249 ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 19 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 A U = = MP 76 75 6 80 4 2 2 18 36 -13.085 -13.292 -0.192 -3.009 1.318 1.676 -1.412 3.029 -10.805 -11.605 -3.404 -3.869 -9.373 -1.011 -9.989 -3.275 -2.110 -10.427 -0.646 -2.857 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 18 37 -7.954 -6.983 -4.851 -0.069 -3.847 1.910 -4.558 -2.933 D 79 75 6 80 4 0 0 17 35 -8.321 -8.003 -6.018 -0.033 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 16 34 -13.806 -0.628 -1.502 1.146 -1.578 -3.431 0.443 D 83 81 6 84 3 0 0 13 31 -12.914 -8.427 -0.004 IL 84 84 3 84 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - a - + - ML 85 84 3 87 3 1 1 15 34 -13.178 -2.616 -0.257 0.808 -0.369 -2.021 0.297 D 86 84 3 87 3 0 0 12 31 -14.374 -9.887 -0.002 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 16 34 -10.566 -1.659 -0.551 -0.279 -1.432 -3.409 1.439 D 89 87 3 90 3 0 0 12 30 -15.356 -10.869 -0.001 IL 90 90 3 90 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 16 34 -8.917 -2.021 -0.412 0.516 -1.438 -1.681 0.917 D 92 90 3 93 3 0 0 12 30 -15.448 -3.642 -0.121 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 14 33 -10.506 -0.103 -3.871 1.390 -2.949 -0.918 -0.473 D 95 93 3 96 3 0 0 10 28 -15.362 -5.760 -0.027 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - + - ML 97 96 3 99 3 1 1 12 31 -10.679 -0.404 -2.037 -1.120 -1.836 1.401 -0.691 D 98 96 3 99 3 0 0 8 27 -15.345 -10.858 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 7 14 -0.854 -1.980 -2.371 -3.711 -0.346 -4.496 1.629 D 101 99 3 102 3 0 0 3 9 -15.381 -0.029 -5.656 IL 102 102 3 102 3 1 1 7 13 -4.326 -1.318 -0.865 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.001 -0.116 -1.568 -0.437 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 28 46 -14.068 -0.000 -12.722 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.004 -0.001 -12.820 -13.032 -13.923 1.218 -8.975 0.739 -8.886 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 U A = = MP 112 111 3 116 6 2 2 26 45 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.987 -11.269 -10.305 -7.505 -8.655 -10.449 1.247 -9.570 -1.792 -7.477 -10.528 -9.672 3.717 -10.821 -2.599 -9.210 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 U A = = MP 118 117 6 122 6 2 2 24 43 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.987 -11.269 -10.305 -7.505 -8.655 -10.449 -0.566 -9.571 -10.408 -7.477 -10.528 -9.672 3.931 -10.821 -4.232 -9.210 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 A U = = MP 124 123 6 128 6 2 2 22 41 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.994 -2.927 -9.714 3.983 -12.268 -13.370 -7.778 -9.688 -9.753 -5.324 -10.417 -5.932 -7.714 -11.477 -9.602 -8.597 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 A U = = MP 130 129 6 134 6 2 2 20 39 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.977 -8.637 -10.172 3.865 -12.313 -13.468 -7.771 -10.214 -9.732 0.182 -10.402 -1.869 -7.695 -11.477 -9.601 -8.770 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 C G = = MP 136 135 6 140 4 2 2 18 37 -13.158 -13.365 -0.001 -11.779 -10.987 -11.267 -10.305 -7.504 -8.656 -10.449 3.969 -9.571 -10.408 -7.476 -10.528 -9.668 -1.699 -10.822 -6.358 -9.210 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.068 -0.000 -12.722 -10.118 1.999 -10.745 -8.842 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - U - * - ML 154 153 3 156 3 1 1 11 29 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.068 -0.000 -12.722 1.999 -10.068 -9.303 -9.409 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.068 -9.303 -9.409 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 55 81 -14.068 -0.000 -12.722 IL 165 165 2 165 3 1 5 57 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 4 55 81 -14.068 -0.000 -12.722 1.987 -9.869 -9.250 -4.902 D 167 165 2 168 3 0 2 54 79 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 56 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - + - ML 169 168 3 171 2 1 3 54 80 -14.721 -0.000 -1.272 -10.137 1.841 -9.227 D 170 168 3 171 2 0 2 53 79 -8.445 -0.004 IL 171 171 3 171 2 1 3 55 80 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 53 79 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.773 -12.077 -11.484 -0.027 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 34 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.367 -13.048 -4.076 -0.089 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - A - + - ML 216 215 6 218 3 1 1 15 33 -10.140 -0.005 -8.794 1.979 -6.040 -5.443 -5.667 D 217 215 6 218 3 0 0 9 28 -15.392 -10.905 -0.001 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - + - ML 219 218 3 221 3 1 1 13 32 -10.140 -0.258 -2.617 -5.141 -4.689 -5.971 1.970 D 220 218 3 221 3 0 0 8 27 -15.392 -10.905 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - + - ML 222 221 3 224 3 1 1 12 30 -9.887 -0.005 -8.541 -4.750 -4.331 -5.566 1.961 D 223 221 3 224 3 0 0 7 25 -15.408 -10.921 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -4.592 -6.179 1.971 -5.327 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 41 66 -14.068 -0.016 -6.545 IL 230 230 2 230 3 1 2 43 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - + - ML 231 230 2 233 3 1 4 41 66 -0.052 -4.835 -12.707 1.889 -8.899 -9.004 -1.779 D 232 230 2 233 3 0 0 40 65 -0.197 -4.635 -3.514 IL 233 233 3 233 3 1 4 40 65 -5.469 -0.033 -11.449 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 4 39 64 -13.004 -0.001 -12.820 -13.032 -13.923 -0.346 -1.100 -7.501 1.455 D 235 233 3 236 5 0 0 37 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 39 64 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 97 G C = = MP 237 236 3 241 6 2 4 38 63 -13.958 -5.203 -0.040 -12.674 -12.954 -13.349 -11.604 -8.526 -13.056 0.525 -13.377 -9.790 -7.814 -12.827 -9.873 3.861 -10.101 -6.400 -8.137 -10.218 -10.202 -11.838 ML 238 236 3 241 6 1 1 36 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 36 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 37 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 37 62 -4.908 -0.076 -8.419 -6.587 -7.692 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 95 A U = = MP 243 242 6 247 6 2 4 36 61 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.928 -0.134 -10.104 3.351 -12.165 -13.008 -7.575 -10.176 -9.702 1.696 -10.356 -0.549 -7.541 -1.257 -9.428 -0.925 ML 244 242 6 247 6 1 1 34 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 34 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 35 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 94 G C = = MP 249 248 6 253 6 2 4 34 59 -5.924 -5.920 -0.049 -12.674 -12.954 -13.349 -8.962 -1.959 -8.878 1.050 -10.050 -9.204 -5.102 -9.473 -8.930 3.684 -9.219 -2.193 -2.766 -8.652 -1.306 -7.803 ML 250 248 6 253 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 31 57 -5.077 -5.340 -3.258 -0.267 -7.771 -7.432 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 33 58 -4.345 -0.114 -7.856 -6.024 -7.130 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 92 A U = = MP 255 254 6 259 6 2 2 32 57 -13.934 -13.874 -0.172 -12.650 -5.890 -3.391 -9.952 -0.569 -10.147 3.737 -12.289 -13.443 -7.746 -10.190 -1.863 0.618 -10.377 -2.610 -7.671 -11.453 -9.577 -8.746 ML 256 254 6 259 6 1 1 30 56 -9.117 -9.463 -4.178 -0.103 -9.313 -6.843 1.901 -3.786 -3.292 -3.468 MR 257 254 6 259 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 91 G C = = MP 261 260 6 265 4 2 2 30 55 -12.958 -13.165 -0.090 -4.053 -7.755 -0.773 -7.574 0.732 -0.349 -8.169 -1.680 -8.264 -8.012 3.569 -8.258 -1.494 -1.755 -7.428 -3.347 -6.539 ML 262 260 6 265 4 1 1 29 54 -6.267 -6.449 -0.077 -5.179 -3.414 1.879 -4.183 -2.540 MR 263 260 6 265 4 1 1 29 54 -7.682 -6.710 -0.144 -3.638 -3.420 1.880 -4.188 -2.545 D 264 260 6 265 4 0 0 27 53 -10.021 -9.702 -0.413 -2.020 IL 265 265 5 265 4 1 1 31 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 30 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - u - + - ML 267 266 6 269 3 1 1 28 53 -2.984 -0.195 -12.610 -0.777 0.556 -2.927 0.860 D 268 266 6 269 3 0 0 26 52 -11.775 -0.518 -1.731 IL 269 269 3 269 3 1 1 28 54 -1.598 -0.583 -8.992 0.000 0.000 0.000 0.000 [ MATL 69 ] 79 - u - + - ML 270 269 3 272 3 1 1 26 52 -14.036 -0.010 -7.238 0.189 0.071 -1.451 0.529 D 271 269 3 272 3 0 0 25 51 -10.075 -0.253 -2.644 IL 272 272 3 272 3 1 1 28 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 80 - c - + - ML 273 272 3 275 3 1 1 25 51 -14.055 -0.004 -8.710 -0.394 0.991 -3.114 0.183 D 274 272 3 275 3 0 0 24 49 -8.927 -0.636 -1.496 IL 275 275 3 275 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 81 - A - + - ML 276 275 3 278 3 1 1 24 50 -3.707 -0.139 -6.046 1.207 -0.916 -1.327 -0.390 D 277 275 3 278 3 0 0 23 48 -8.219 -0.264 -2.610 IL 278 278 3 278 3 1 1 26 51 -1.260 -0.786 -8.599 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 23 48 -14.047 -0.044 -5.045 1.618 -1.758 -1.460 -1.882 D 280 278 3 281 3 0 0 21 46 -9.565 -0.838 -1.187 IL 281 281 3 281 3 1 1 24 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - A - + - ML 282 281 3 284 3 1 1 22 47 -3.298 -0.401 -2.828 1.330 -0.852 -2.042 -0.535 D 283 281 3 284 3 0 0 14 39 -10.748 -3.466 -0.138 IL 284 284 3 284 3 1 1 24 49 -1.040 -0.966 -9.128 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.286 0.880 -2.061 0.136 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Lys LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:37 2015 COM [1] cmbuild --hand --enone Lys_model.cm aligntRNAdb-Lys.sto NSEQ 259 EFFN 4.801712 CKSUM 36936522 STATS LOCAL MSV -8.7422 0.71872 STATS LOCAL VITERBI -9.6929 0.71872 STATS LOCAL FORWARD -3.6203 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.20816 1.54630 1.53104 1.30229 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 0.00000 * 1 3.91192 0.13466 3.76902 2.49001 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 2 0.14421 3.62088 2.52067 3.60717 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 3 2.76439 0.94056 2.53580 0.76062 3 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 4 2.78843 1.66915 2.73330 0.37823 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.04001 3.62247 4.38173 0.76622 0.62506 1.09861 0.40547 5 0.74121 2.99240 0.88411 2.80988 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 6 1.17236 1.50839 1.72695 1.23349 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 7 2.00405 3.42512 0.22924 3.28269 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 8 0.23572 2.69857 2.81283 2.49298 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 9 0.09171 3.74279 3.53729 3.35661 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 10 3.19476 4.11746 0.07720 4.07265 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 11 4.05716 0.11158 3.91716 2.68261 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 12 4.31974 3.23094 4.18044 0.07055 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.06252 4.38173 3.03450 1.46634 0.26236 1.09861 0.40547 13 1.02337 1.66933 1.58013 1.40122 14 a = - < 1.38629 1.38629 1.38629 1.38629 0.12224 4.34549 2.28180 1.46634 0.26236 1.76589 0.18758 14 0.86178 1.89365 2.17590 1.15975 15 a + - _ 1.38629 1.38629 1.38629 1.38629 0.31871 4.25212 1.35218 1.46634 0.26236 2.54331 0.08187 15 1.05048 1.60564 1.96124 1.17510 16 a + - _ 1.38629 1.38629 1.38629 1.38629 0.76363 3.97183 0.66322 1.46634 0.26236 3.39769 0.03402 16 1.27122 1.64718 1.85910 0.99126 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.23070 3.28595 1.78011 1.46634 0.26236 4.02966 0.01794 17 1.09321 1.70098 1.63631 1.24598 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14956 3.14529 2.34487 1.46634 0.26236 2.38075 0.09704 18 0.91657 1.84645 1.65187 1.38379 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09190 3.27811 2.99358 1.46634 0.26236 3.36058 0.03533 19 1.29961 1.80691 1.17681 1.36672 20 g + - _ 1.38629 1.38629 1.38629 1.38629 0.13165 3.30161 2.44727 1.46634 0.26236 4.02213 0.01808 20 1.45653 1.51410 1.92195 0.91472 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.15384 2.62370 2.65850 0.85817 0.55154 0.05417 2.94267 21 0.91869 1.56171 1.96833 1.38035 23 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04755 4.35868 3.39199 1.46634 0.26236 0.53573 0.88006 22 1.50499 1.52654 1.41417 1.14707 24 u = - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36115 4.36115 1.46634 0.26236 0.56570 0.83925 23 0.08288 4.36333 3.05126 3.93716 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 24 3.02781 4.05067 0.09211 3.80937 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 25 4.15568 0.09689 3.94249 2.85994 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 26 0.64763 2.97578 1.04215 2.61709 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 27 2.73008 1.37587 2.39479 0.52598 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 28 3.59513 1.94600 3.41300 0.22721 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 29 0.10323 4.22099 2.73712 3.98223 31 A = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 30 0.26831 3.67761 1.72970 3.42011 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 31 3.94381 0.12758 3.80121 2.55031 33 C = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 32 3.88494 0.07366 4.40157 3.26481 34 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 33 3.47224 3.30089 4.01265 0.08991 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 34 3.47224 3.30089 4.01265 0.08991 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 35 3.47224 3.30089 4.01265 0.08991 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 36 3.47224 3.30089 4.01265 0.08991 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 37 0.06046 4.13170 3.78188 3.92038 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 38 0.06046 4.13170 3.78188 3.92038 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 39 2.80334 3.95727 0.10993 3.71407 41 G = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 40 3.61661 2.02624 3.46139 0.21083 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 41 4.18364 3.04765 4.01840 0.08414 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 42 0.25953 3.57662 1.80044 3.34123 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 43 0.57946 2.67467 1.24286 2.49728 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 44 0.07630 3.91139 3.64448 3.60031 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 45 2.15413 3.61111 0.20084 3.24590 47 G + - , 1.38629 1.38629 1.38629 1.38629 1.38600 4.38173 0.30460 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 47 1.80313 1.30589 1.07724 1.49721 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 48 1.80084 1.30660 1.07809 1.49675 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 49 1.79984 1.30690 1.07847 1.49655 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 50 1.79946 1.30702 1.07861 1.49647 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 51 1.79938 1.30704 1.07864 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 52 1.79946 1.30702 1.07861 1.49647 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.62482 0.07521 53 0.70122 1.97866 1.80020 1.60695 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.08195 3.23545 3.23545 1.46634 0.26236 4.05280 0.01753 54 1.47228 1.70747 1.89731 0.82257 56 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10864 3.23545 2.75511 1.46634 0.26236 4.05280 0.01753 55 1.42921 1.68686 1.84976 0.87197 57 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08408 3.21090 3.21090 1.46634 0.26236 4.06345 0.01734 56 1.33673 1.94783 0.94898 1.57224 58 g + - _ 1.38629 1.38629 1.38629 1.38629 0.21516 3.21090 1.87556 1.46634 0.26236 4.06345 0.01734 57 1.73069 1.22002 1.16195 1.53834 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 58 1.73058 1.22007 1.16199 1.53831 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 59 1.73055 1.22008 1.16200 1.53830 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 60 1.73066 1.22003 1.16196 1.53833 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 61 1.73103 1.21988 1.16182 1.53844 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 62 1.73186 1.21952 1.16152 1.53868 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03335 3.41734 64 0.18969 3.13713 3.10962 2.46798 66 A + - , 1.38629 1.38629 1.38629 1.38629 1.28004 0.34324 4.38173 0.05478 2.93165 1.09861 0.40547 65 1.54778 1.83509 2.54678 0.59902 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 66 2.29285 3.65866 0.16934 3.53947 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 67 1.04889 2.19259 0.94839 1.89257 71 g = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 68 1.68407 2.59659 0.44079 2.33998 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.03795 3.69951 4.38173 0.81855 0.58173 1.09861 0.40547 69 0.50367 2.77216 1.35619 2.58330 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.11329 4.38173 2.35804 1.46634 0.26236 1.09861 0.40547 70 1.65830 2.08661 0.58314 2.06130 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.07119 4.29606 2.89881 1.46634 0.26236 0.42603 1.05870 71 1.56463 1.21346 2.28239 0.93745 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12414 2.26801 4.32564 0.54237 0.87077 0.58959 0.80868 72 1.24172 1.45542 1.95594 1.08951 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03057 4.36560 4.05102 1.46634 0.26236 0.70139 0.68497 73 1.48170 0.99300 2.33069 1.18726 80 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02717 4.37512 4.25329 1.46634 0.26236 0.94589 0.49157 74 0.80866 1.80985 1.93057 1.40324 81 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09632 2.68320 3.75166 0.70991 0.67666 0.93768 0.49681 75 0.50919 2.13884 2.06268 1.87007 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04835 4.37078 3.36502 1.46634 0.26236 0.94128 0.49451 76 0.73311 1.80822 2.08592 1.46338 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.22417 2.44989 2.16704 0.78231 0.61129 1.47179 0.26073 77 1.40703 1.10388 2.11456 1.19448 90 c + - _ 1.38629 1.38629 1.38629 1.38629 0.10904 4.25038 2.41861 1.46634 0.26236 0.29891 1.35335 78 2.18195 0.64932 2.01178 1.46523 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02762 4.29610 4.29610 1.46634 0.26236 0.37312 1.16662 79 2.67376 1.47173 2.56753 0.47039 92 U = - > 1.38629 1.38629 1.38629 1.38629 0.03846 3.68585 4.36942 0.81761 0.58248 0.69863 0.68770 80 2.67859 0.50196 2.32087 1.47924 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 81 2.24630 1.01797 1.99096 0.92554 95 u = - > 1.38629 1.38629 1.38629 1.38629 0.04624 3.42081 4.38173 0.64359 0.74529 1.09861 0.40547 82 3.71905 0.19699 3.47586 2.09061 97 C = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 83 3.49976 0.26596 3.24615 1.80542 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 84 1.41634 1.89260 1.31534 1.08371 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 85 3.04474 1.01327 2.79430 0.63827 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 86 0.43139 2.90335 1.51239 2.58796 101 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 87 0.87002 2.71009 0.83243 2.53154 102 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 88 3.83890 2.79479 3.61432 0.11606 103 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 89 2.91439 3.93986 0.10342 3.70633 104 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 90 0.32496 2.85658 1.97370 2.51285 105 A + - : 1.38629 1.38629 1.38629 1.38629 0.01274 4.36915 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-LeuTAA.cm0000644000543100007160000017250212573631164021745 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Leu-TAA STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:07 2015 COM [1] cmbuild --hand --enone Leu-TAA_model.cm aligntRNAdb-Leu-TAA.sto COM [2] cmcalibrate --seed 208 Leu-TAA_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 858466697 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.6547 0.71870 ECMLC 0.58317 -8.02654 2.41365 1600000 528841 0.002269 ECMGC 0.33602 -54.53102 -39.68853 1600000 58619 0.006824 ECMLI 0.56834 -7.99938 2.65996 1600000 513102 0.002339 ECMGI 0.36272 -49.31211 -35.77814 1600000 54207 0.007379 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 121 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 43 104 122 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 44 104 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 98 - A - + MR 3 2 3 5 5 24 51 102 121 -13.126 -0.001 -12.941 -13.153 -14.045 1.969 -4.192 -8.517 -5.125 D 4 2 3 5 5 14 39 101 120 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 42 102 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 97 G C = = MP 6 5 3 10 6 24 51 101 120 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.213 -8.663 -11.975 1.526 -13.191 -10.197 -7.906 -11.926 -9.961 3.661 -2.217 -2.055 -8.139 -10.505 -10.159 -10.640 ML 7 5 3 10 6 15 41 100 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 41 99 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 38 97 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 42 101 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 42 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 96 U A = = MP 12 11 6 16 6 23 49 99 118 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.748 -10.571 -1.934 -9.692 -10.530 -7.600 -10.650 -9.796 3.934 -3.278 -2.418 -9.332 ML 13 11 6 16 6 15 41 98 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 40 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 38 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 42 99 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 42 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 95 U A = = MP 18 17 6 22 6 21 48 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.375 -12.061 -12.226 -11.310 -10.427 -12.099 -9.614 -11.882 -10.388 -11.302 -12.423 -11.901 3.995 -10.488 -5.341 -5.528 ML 19 17 6 22 6 15 40 96 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 40 96 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 37 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 41 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 41 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 94 A U = = MP 24 23 6 28 6 19 46 95 114 -6.148 -14.017 -0.024 -12.794 -8.778 -13.468 -10.099 -8.759 -10.294 3.800 -12.426 -13.584 -7.885 -10.336 -9.854 1.027 -10.524 -6.046 -7.814 -11.599 -9.717 -8.892 ML 25 23 6 28 6 14 40 94 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 40 94 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 37 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 43 94 113 -4.991 -5.254 -0.116 -6.909 -7.686 -7.346 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 41 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 93 a u = = MP 30 29 6 34 6 17 44 93 112 -14.075 -14.014 -0.001 -12.791 -13.070 -13.465 -9.856 0.065 -9.966 2.961 -2.708 -12.018 -7.071 -10.145 -9.699 2.730 -10.296 -1.951 -7.145 -10.754 -8.982 -3.330 ML 31 29 6 34 6 14 40 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 40 92 111 -7.822 -6.551 -0.687 -6.529 -1.663 -4.743 -0.452 0.949 -1.191 -0.150 D 33 29 6 34 6 10 37 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 40 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 40 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 92 G C = = MP 36 35 6 40 6 15 42 91 110 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.426 -8.724 -10.727 -0.029 -12.669 -11.399 -7.895 -10.753 -9.894 3.885 -10.425 -6.172 -7.931 -11.090 -9.869 -2.247 ML 37 35 6 40 6 13 39 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 39 90 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 37 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 40 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 40 91 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 91 G C = = MP 42 41 6 46 4 13 40 89 108 -13.280 -13.487 -0.001 -11.901 -10.588 -4.616 -10.952 2.058 -12.742 -10.913 -7.834 -10.985 -9.902 3.437 -10.365 -0.081 -7.930 -10.852 -9.881 -9.579 ML 43 41 6 46 4 12 38 90 109 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 38 90 109 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 37 89 108 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 39 91 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 39 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 11 38 87 106 -14.190 -0.015 -6.643 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 9 36 86 105 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 38 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 10 37 86 105 -14.829 -0.000 -2.339 -10.421 1.926 -9.428 D 52 50 3 53 2 9 36 85 104 -8.943 -0.003 IL 53 53 3 53 2 10 37 87 106 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 36 85 104 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 17 46 65 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 17 46 65 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 27 46 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 29 G C = = MP 58 57 1 62 6 2 2 27 46 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.776 -8.643 -13.343 -1.619 -13.527 -9.887 -7.935 -13.080 -9.995 3.927 -10.216 -1.140 -8.266 -10.323 -10.336 -12.152 ML 59 57 1 62 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 C G = = MP 64 63 6 68 6 2 2 25 44 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 65 63 6 68 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 A U = = MP 70 69 6 74 6 2 2 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.100 -1.058 -10.294 3.951 -12.415 -13.578 -7.876 -10.335 -9.855 -5.421 -10.524 -6.047 -7.811 -11.598 -9.709 -8.893 ML 71 69 6 74 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 G U = = MP 76 75 6 80 4 2 2 21 40 -13.280 -13.487 -0.001 -11.901 -2.760 -0.631 -10.294 -3.363 -12.435 -13.590 -7.893 -10.336 -2.488 -0.181 -2.744 3.796 -7.818 -11.599 -9.724 -8.892 ML 77 75 6 80 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 18 37 -14.190 -0.000 -12.844 1.984 -10.035 -4.588 -9.453 D 83 81 6 84 3 0 0 22 40 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - + - ML 85 84 3 87 3 1 1 17 36 -14.190 -0.000 -12.844 -2.646 -10.456 1.940 -9.453 D 86 84 3 87 3 0 0 20 39 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - C - + - ML 88 87 3 90 3 1 1 16 34 -14.190 -0.008 -7.538 -0.934 1.513 -7.501 -0.695 D 89 87 3 90 3 0 0 19 38 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - C - + - ML 91 90 3 93 3 1 1 14 33 -0.166 -3.204 -12.837 -1.702 1.667 -7.693 -0.966 D 92 90 3 93 3 0 0 15 33 -8.385 -0.233 -2.777 IL 93 93 3 93 3 1 1 13 32 -5.576 -0.031 -11.446 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - + - ML 94 93 3 96 3 1 1 12 31 -14.190 -0.000 -12.844 -3.368 -10.485 1.964 -9.470 D 95 93 3 96 3 0 0 16 35 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - G - + - ML 97 96 3 99 3 1 1 11 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 98 96 3 99 3 0 0 15 34 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - + - ML 100 99 3 102 3 1 1 5 8 -0.009 -7.294 -12.844 -2.307 -0.116 -4.082 1.494 D 101 99 3 102 3 0 0 3 6 -6.174 -1.687 -0.566 IL 102 102 3 102 3 1 1 4 7 -8.882 -0.004 -11.582 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.536 -4.391 0.069 -8.559 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 -1.394 -9.692 -10.530 -7.599 -10.650 -9.795 3.868 -3.166 -0.180 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -3.022 -10.294 3.840 -12.435 -13.590 -7.893 -10.336 -9.854 0.416 -10.524 -2.305 -7.818 -11.599 -9.724 -8.892 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 3.272 -10.294 2.520 -12.430 -13.587 -7.889 -10.336 -9.854 -1.082 -10.524 -6.045 -7.816 -3.296 -9.720 -8.892 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.394 1.872 -9.852 -1.572 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.377 -9.092 0.484 -9.008 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.235 1.407 -4.708 -2.908 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - + - ML 166 165 2 168 3 1 2 49 68 -14.190 -0.033 -5.474 -2.110 0.112 -3.808 1.388 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 1 48 67 -14.810 -0.000 1.328 -1.321 -3.468 -0.003 D 170 168 3 171 2 0 0 47 66 -9.397 -0.002 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -13.489 -13.170 -4.364 -0.072 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - C - + - ML 216 215 6 218 3 1 1 14 33 -9.992 -0.005 -8.646 -0.486 1.020 -2.877 0.167 D 217 215 6 218 3 0 0 9 28 -15.530 -6.578 -0.015 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - C - + - ML 219 218 3 221 3 1 1 13 31 -10.223 -0.203 -2.936 -3.321 1.034 -4.347 0.851 D 220 218 3 221 3 0 0 8 26 -15.516 -11.029 -0.001 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - u - + - ML 222 221 3 224 3 1 1 12 30 -10.025 -3.128 -0.177 0.033 0.252 -2.334 0.667 D 223 221 3 224 3 0 0 7 25 -15.528 -11.041 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 29 48 -14.190 -0.071 -4.379 IL 230 230 2 230 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - a - + - ML 231 230 2 233 3 1 1 29 48 -0.024 -5.910 -12.773 0.643 0.631 -1.793 -0.734 D 232 230 2 233 3 0 0 28 46 -1.228 -0.854 -5.661 IL 233 233 3 233 3 1 1 28 47 -5.916 -0.025 -11.550 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - C - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -10.276 1.999 -10.915 -8.979 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 90 A U = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.937 -12.434 -13.590 -7.892 -10.336 -9.854 -1.550 -10.524 -1.653 -7.817 -11.599 -9.723 -8.892 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 89 G C = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.022 -2.596 -14.400 -6.116 -13.647 -9.795 -7.938 -13.832 -10.005 3.982 -10.196 -6.570 -8.304 -10.264 -10.391 -13.519 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 88 A U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -5.317 -0.037 -12.794 -13.073 -13.468 -10.099 -0.521 -10.294 3.898 -12.434 -13.590 -7.892 -10.336 -9.854 -5.420 -10.524 -1.507 -7.817 -11.599 -9.723 -8.892 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 22 40 -4.913 -0.076 -8.424 -6.592 -7.697 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 86 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.019 -1.653 -14.385 -6.115 -13.646 -9.796 -7.938 -13.823 -10.005 3.968 -10.197 -6.570 -8.304 -10.264 -10.390 -13.497 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 85 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.004 -8.502 -11.878 -0.162 -13.713 -1.804 -13.578 -9.846 -7.937 -13.361 -9.999 3.887 -10.207 -6.547 -8.283 -10.297 -10.360 -12.600 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 267 266 6 269 3 1 1 15 34 -14.187 -0.000 -12.841 -11.312 -10.022 -12.769 1.999 D 268 266 6 269 3 0 0 18 36 -7.621 -0.421 -2.013 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - C - + - ML 273 272 3 275 3 1 1 13 31 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 11 30 -14.190 -0.000 -12.844 1.987 -10.063 -4.946 -9.467 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - a - + - ML 282 281 3 284 3 1 1 7 14 -5.290 -0.038 -12.844 0.910 0.433 -4.078 -0.490 D 283 281 3 284 3 0 0 6 13 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 7 14 -3.884 -0.117 -6.584 0.000 0.000 0.000 0.000 [ MATL 74 ] 84 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -9.055 -1.756 -9.866 1.888 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Leu-TAA LENG 90 MAXL 181 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:07 2015 COM [1] cmbuild --hand --enone Leu-TAA_model.cm aligntRNAdb-Leu-TAA.sto NSEQ 282 EFFN 2.784027 CKSUM 858466697 STATS LOCAL MSV -9.3773 0.71870 STATS LOCAL VITERBI -9.8342 0.71870 STATS LOCAL FORWARD -3.2691 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30183 1.48807 1.45493 1.31400 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 0.00000 * 1 1.71931 2.59311 0.41421 2.46320 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 2 2.93568 1.99421 2.70596 0.29574 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 3 3.21971 2.04629 2.99736 0.24731 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 4 0.54301 2.71875 1.28180 2.58350 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.04754 3.61692 3.93395 1.05216 0.42953 1.09861 0.40547 5 1.27889 2.05845 0.80340 1.92279 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03721 4.00294 4.00294 1.46634 0.26236 1.05229 0.42946 6 1.77377 2.48910 0.43162 2.32411 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 7 1.53570 2.63345 0.46173 2.49287 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 8 2.80193 2.73364 3.32637 0.17626 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.04335 4.00427 3.72194 1.46634 0.26236 1.09861 0.40547 9 2.31536 3.38569 0.20230 2.98445 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.03738 3.99830 3.99830 1.46634 0.26236 0.91950 0.50869 10 2.44866 3.30237 0.17953 3.19091 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 11 3.41494 0.19384 3.20963 2.27339 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 12 0.29294 3.05592 1.88905 2.88893 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 13 1.68226 2.09695 0.57259 2.06238 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 14 0.15026 3.29995 2.91422 3.02864 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 15 2.40863 3.45965 0.18446 3.05620 16 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 16 1.64754 0.74698 2.47288 1.38893 17 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04044 4.00427 3.84441 1.46634 0.26236 1.09861 0.40547 17 1.86288 0.60251 2.62110 1.49335 18 C + - _ 1.38629 1.38629 1.38629 1.38629 0.85023 0.58989 4.00110 0.08214 2.54010 0.99493 0.46164 18 2.57358 3.58066 0.15791 3.17118 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 19 2.90590 3.81029 0.11737 3.38431 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 20 1.81081 1.52889 2.37839 0.64055 23 U + - _ 1.38629 1.38629 1.38629 1.38629 1.00854 0.48287 4.00427 0.05810 2.87446 1.09861 0.40547 21 0.12456 3.44214 3.14676 3.16714 25 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 22 2.22022 1.33431 1.90214 0.73642 26 u = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 23 3.09796 2.07407 2.85522 0.25923 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 24 2.54726 3.36660 0.16866 3.16067 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 25 3.36652 0.22645 3.11357 2.08998 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 26 0.56561 2.45994 1.48154 2.12647 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 27 2.71011 1.76201 2.45760 0.39137 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 28 0.26647 3.02958 2.01484 2.95178 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 29 0.26674 3.02821 2.01454 2.94987 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 30 0.49300 2.77555 1.37311 2.60943 34 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 31 0.70246 2.25114 1.29159 2.08330 35 a = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 32 2.58649 0.31605 3.17723 1.87083 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 33 2.80193 2.73364 3.32637 0.17626 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 34 2.80193 2.73364 3.32637 0.17626 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 35 0.12456 3.44214 3.14676 3.16714 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 36 0.12456 3.44214 3.14676 3.16714 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 37 0.64365 2.54747 1.26803 2.16311 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 38 1.28348 0.86156 2.32403 1.59677 42 c + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 39 2.32738 0.81491 2.05609 1.10317 43 c = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 40 2.82878 1.58304 2.57862 0.41599 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 41 3.17631 2.33276 2.83786 0.21980 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 42 3.17955 2.33322 2.83918 0.21948 46 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 43 0.46923 2.59776 1.53044 2.48128 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 44 1.76177 1.44409 2.33325 0.70255 48 u + - , 1.38629 1.38629 1.38629 1.38629 0.05125 4.00427 3.45080 1.46634 0.26236 1.09861 0.40547 45 0.81110 1.82937 2.09238 1.30297 49 a + - , 1.38629 1.38629 1.38629 1.38629 0.99496 3.99069 0.49139 1.46634 0.26236 1.31889 0.31120 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 47 1.80343 1.30580 1.07713 1.49727 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 48 1.80132 1.30645 1.07792 1.49684 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 49 1.80042 1.30672 1.07825 1.49666 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 50 1.80012 1.30682 1.07837 1.49660 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 51 1.80009 1.30683 1.07837 1.49660 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 52 1.80021 1.30679 1.07833 1.49662 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.62948 0.07485 53 1.22096 1.44207 1.74366 1.22508 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.08862 3.16057 3.16057 1.46634 0.26236 3.26155 0.03908 54 1.34683 1.38142 1.81494 1.12126 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09989 3.17374 2.93334 1.46634 0.26236 3.52445 0.02991 55 1.18118 1.54266 1.72440 1.20068 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.16657 3.16230 2.19724 1.46634 0.26236 3.53242 0.02967 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 57 1.73140 1.21972 1.16169 1.53855 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 58 1.73124 1.21978 1.16174 1.53850 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 59 1.73116 1.21982 1.16178 1.53848 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 60 1.73119 1.21981 1.16176 1.53849 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 61 1.73145 1.21970 1.16167 1.53856 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 62 1.73211 1.21941 1.16143 1.53876 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08404 2.51819 64 1.09879 1.32034 1.95061 1.35676 68 a + - , 1.38629 1.38629 1.38629 1.38629 0.94301 0.52423 3.98794 0.07526 2.62424 0.72232 0.66480 65 3.09193 0.15801 3.66661 2.58781 71 C + - , 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 66 0.33107 3.06006 1.71765 2.89187 72 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 67 2.57305 3.38660 0.15966 3.28503 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 68 0.35757 2.92232 1.70285 2.73870 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 69 2.48067 3.31051 0.17545 3.20055 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 70 2.16018 3.06897 0.24149 2.94175 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.03872 4.00427 3.92506 1.46634 0.26236 1.09861 0.40547 71 2.79904 2.73122 3.32338 0.17678 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03721 4.00276 4.00276 1.46634 0.26236 1.04651 0.43257 72 2.80193 2.73364 3.32637 0.17626 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 73 3.09193 0.15801 3.66661 2.58781 79 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 74 0.14504 3.32691 2.95558 3.05630 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 75 0.12456 3.44214 3.14676 3.16714 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 76 1.00210 1.37649 2.12831 1.34174 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05324 3.39284 4.00427 0.86959 0.54321 1.09861 0.40547 77 2.39009 2.08632 2.90594 0.31534 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 78 3.16083 0.26042 2.88926 2.03055 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 79 3.39685 0.20066 3.13703 2.25459 86 C = - > 1.38629 1.38629 1.38629 1.38629 0.05324 3.39284 4.00427 0.86959 0.54321 1.09861 0.40547 80 2.94874 1.89063 2.72024 0.31367 88 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 81 3.46537 0.18727 3.21115 2.31053 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 82 3.08085 2.04552 2.85053 0.26533 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 83 2.73264 0.55895 2.44505 1.28584 91 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 84 2.61366 0.50430 2.30091 1.50221 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 85 2.15656 0.87903 1.88215 1.14939 93 c = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 86 2.80594 1.46911 2.52545 0.46299 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 87 0.28417 3.17416 1.86660 2.97814 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 88 0.33385 2.85127 1.83233 2.71773 96 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 89 2.71544 0.48371 2.37373 1.49522 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 90 0.18395 3.00157 2.88868 2.76992 98 A + - : 1.38629 1.38629 1.38629 1.38629 0.01875 3.98586 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Lys.cm0000644000543100007160000017245612573631650021165 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Lys-2nd-align STATES 289 NODES 76 CLEN 90 W 129 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:56 2015 COM [1] cmbuild --hand --enone Lys-final-vert.cm ../Lys-2nd-align.sto COM [2] cmcalibrate --seed 208 Lys-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1062 EFFN 1062.000000 CKSUM 2088274238 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8923 0.71864 ECMLC 0.61319 -8.05449 2.04950 1600000 588772 0.002038 ECMGC 0.30672 -45.67808 -30.50342 1600000 42020 0.009519 ECMLI 0.62258 -7.40661 2.43771 1600000 550707 0.002179 ECMGI 0.31721 -41.39172 -26.87305 1600000 40014 0.009997 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 129 200 -14.981 -16.226 -0.002 -9.883 IL 1 1 2 1 4 18 40 130 201 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 42 130 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 126 - A - + MR 3 2 3 5 5 25 48 129 200 -15.028 -0.000 -14.844 -15.056 -15.948 1.717 -4.440 -0.712 -4.153 D 4 2 3 5 5 15 36 127 198 -6.429 -1.784 -4.056 -0.867 -3.481 IR 5 5 3 5 5 17 39 129 200 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 125 C G = = MP 6 5 3 10 6 25 47 128 199 -15.963 -15.902 -0.000 -14.678 -14.958 -15.353 -13.014 -13.295 -6.088 -2.376 -3.495 -12.476 3.952 -11.598 -12.435 -3.611 -12.555 -11.697 -4.622 -12.848 -3.226 -11.237 ML 7 5 3 10 6 16 37 126 197 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 38 127 198 -8.130 -6.859 -0.527 -6.837 -1.971 -5.051 -0.697 -1.753 1.397 -1.140 D 9 5 3 10 6 13 33 122 193 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 38 127 198 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 39 127 198 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 124 A U = = MP 12 11 6 16 6 24 45 126 197 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -12.005 -3.788 -12.200 3.702 -14.339 -15.486 -9.796 -2.167 -11.761 0.799 -12.430 -0.723 -2.472 -13.502 -11.627 -2.588 ML 13 11 6 16 6 16 37 124 195 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 37 124 195 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 33 120 191 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 38 125 196 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 38 125 196 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 123 C G = = MP 18 17 6 22 6 23 43 124 195 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -4.527 -13.289 -12.330 -3.739 -2.715 -12.476 3.317 -11.596 -12.433 -9.492 -12.554 -11.685 2.430 -12.846 -1.439 -11.234 ML 19 17 6 22 6 16 37 122 193 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 37 122 193 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 33 118 189 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 38 123 194 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 38 123 194 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 122 U A = = MP 24 23 6 28 6 21 41 122 193 -5.158 -15.903 -0.041 -14.680 -14.959 -15.354 -13.014 -13.296 -12.332 -3.119 -1.190 -2.492 -0.483 -11.598 -4.597 -9.503 -12.556 -11.698 3.820 -12.849 -2.095 -2.716 ML 25 23 6 28 6 15 36 120 191 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 36 120 191 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 33 116 187 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 40 121 192 -7.616 -7.879 -0.018 -9.534 -10.311 -9.971 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 38 121 192 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 121 A U = = MP 30 29 6 34 6 19 39 120 191 -15.964 -6.684 -0.014 -14.680 -14.959 -15.354 -2.586 -1.520 -5.747 3.660 -11.926 -11.500 -4.013 -11.188 -10.870 1.154 -11.233 -1.530 -7.263 -5.636 -3.607 -3.576 ML 31 29 6 34 6 15 36 118 189 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 35 118 189 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 115 186 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 37 119 190 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 38 119 190 -5.354 -0.056 -8.865 -7.033 -8.138 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 119 A U = = MP 36 35 6 40 6 17 37 118 189 -5.878 -15.903 -0.025 -14.680 -14.959 -15.354 -4.769 0.623 -9.827 3.316 -3.355 -10.499 -1.521 -5.125 -10.068 1.047 -10.422 -4.472 0.544 -9.777 -2.052 -2.514 ML 37 35 6 40 6 15 35 117 188 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 116 187 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 114 185 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 117 188 -6.924 -7.187 -0.029 -8.843 -9.619 -9.279 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 36 117 188 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 118 G C = = MP 42 41 6 46 4 15 35 116 187 -15.187 -15.394 -0.000 -13.808 -13.536 -6.468 -14.847 0.484 -15.347 -11.831 -9.820 -14.659 -11.876 3.813 -3.639 -1.145 -10.131 -12.245 -12.191 -13.597 ML 43 41 6 46 4 14 34 115 186 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 115 186 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 32 113 184 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 35 116 187 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 116 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - + - ML 48 47 6 50 3 13 33 114 185 -16.096 -0.000 -14.750 1.934 -4.141 -3.967 -4.104 D 49 47 6 50 3 11 32 112 184 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 34 115 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 12 32 113 184 -5.314 -0.037 1.973 -11.924 -11.318 -3.780 D 52 50 3 53 2 11 31 112 183 -8.445 -0.004 IL 53 53 3 53 2 12 32 113 184 -6.708 -0.014 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 112 183 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 50 68 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 50 68 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 32 50 -0.000 -14.091 -13.499 -14.139 [ MATP 15 ] 13 35 G C = = MP 58 57 1 62 6 2 3 32 50 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -13.945 -10.519 -16.523 -8.015 -15.551 -1.322 -9.823 -15.864 -11.891 3.955 -12.078 -3.549 -10.194 -12.140 -12.284 -15.768 ML 59 57 1 62 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 34 C G = = MP 64 63 6 68 6 2 3 30 48 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -13.016 -13.298 -12.333 -9.534 -10.684 -12.477 3.950 -3.980 -12.437 -9.506 -12.557 -11.702 -1.294 -12.850 -3.900 -11.239 ML 65 63 6 68 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 33 U A = = MP 70 69 6 74 6 2 3 28 46 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -12.932 -12.913 -12.325 -9.171 -10.764 -12.554 -6.475 -11.630 -12.387 -1.309 -12.549 -10.910 3.943 -12.881 -3.299 -3.337 ML 71 69 6 74 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 32 a u = = MP 76 75 6 80 4 2 2 26 44 -15.187 -15.394 -0.056 -4.719 1.466 2.033 -2.419 2.685 -12.855 -13.893 -4.651 -4.993 -11.465 -2.405 -12.106 -1.460 -0.135 -0.861 -2.589 -1.866 ML 77 75 6 80 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - + - ML 82 81 6 84 3 1 1 24 42 -16.041 -0.164 -3.220 1.399 -2.380 -4.466 0.169 D 83 81 6 84 3 0 0 18 37 -12.807 -8.320 -0.005 IL 84 84 3 84 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - + - ML 85 84 3 87 3 1 1 23 41 -15.877 -0.390 -2.077 1.220 -0.978 -0.903 -0.673 D 86 84 3 87 3 0 0 16 35 -14.694 -10.207 -0.001 IL 87 87 3 87 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - u - + - ML 88 87 3 90 3 1 1 22 41 -15.486 -0.675 -1.421 0.214 0.242 -5.188 0.705 D 89 87 3 90 3 0 0 14 33 -15.980 -11.493 -0.001 IL 90 90 3 90 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - a - + - ML 91 90 3 93 3 1 1 22 40 -1.139 -0.914 -6.036 0.796 0.145 -4.115 0.138 D 92 90 3 93 3 0 0 12 29 -16.753 -2.102 -0.383 IL 93 93 3 93 3 1 1 21 40 -1.455 -0.655 -11.728 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - G - + - ML 94 93 3 96 3 1 1 13 30 -15.212 -0.005 -8.110 -3.454 -11.212 1.954 -4.850 D 95 93 3 96 3 0 0 11 28 -16.391 -3.746 -0.112 IL 96 96 3 96 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - G - + - ML 97 96 3 99 3 1 1 12 29 -15.295 -0.378 -2.117 -1.661 -3.991 1.828 -3.824 D 98 96 3 99 3 0 0 9 27 -16.286 -8.003 -0.006 IL 99 99 3 99 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - a - + - ML 100 99 3 102 3 1 1 11 20 -0.279 -2.509 -13.576 0.838 -1.036 0.456 -1.500 D 101 99 3 102 3 0 0 9 19 -1.790 -0.494 -11.063 IL 102 102 3 102 3 1 1 10 19 -2.782 -0.227 -12.793 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - a - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.966 -0.335 -1.860 -0.031 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.096 -0.000 -14.750 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - G - + - ML 109 108 2 111 5 1 1 26 45 -6.798 -0.013 -14.845 -15.057 -15.949 0.942 -4.317 1.020 -10.706 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.248 -0.060 -6.926 -8.759 -8.032 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 55 U A = = MP 112 111 3 116 6 2 2 25 44 -15.964 -15.903 -0.000 -14.680 -14.959 -15.354 -3.227 -4.522 -4.025 -0.674 -5.212 -11.120 2.111 -6.198 -3.136 -5.579 -10.652 -7.555 3.393 -5.603 -3.169 -5.269 ML 113 111 3 116 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 54 U A = = MP 118 117 6 122 6 2 2 23 42 -6.826 -15.903 -0.013 -14.680 -14.959 -15.354 -13.016 -13.298 -12.333 -9.534 -10.684 -12.477 0.343 -11.599 -12.437 -9.506 -12.557 -11.702 3.845 -12.850 -1.755 -4.009 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 22 41 -6.040 -6.303 -0.055 -7.958 -8.734 -8.395 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 53 A U = = MP 124 123 6 128 6 2 2 21 40 -15.964 -15.903 -0.001 -11.274 -14.959 -15.354 -12.006 -4.447 -12.201 3.899 -14.342 -15.497 -9.800 -12.244 -11.761 0.038 -12.431 -7.952 -9.725 -13.506 -11.631 -10.799 ML 125 123 6 128 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 42 52 G C = = MP 130 129 6 134 6 2 2 19 38 -15.963 -15.903 -0.000 -14.679 -14.959 -15.354 -12.730 -10.585 -13.223 2.094 -14.863 -12.485 -9.812 -13.217 -11.829 3.528 -12.231 -2.405 -9.956 -12.623 -11.942 -11.850 ML 131 129 6 134 6 1 1 23 42 -6.895 -7.241 -0.694 -1.650 -7.091 -4.620 -0.108 -1.023 0.886 -0.449 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 43 51 C G = = MP 136 135 6 140 4 2 2 17 35 -15.187 -15.394 -0.000 -13.808 -13.016 -13.298 -12.333 -1.833 -3.929 -12.477 3.938 -4.047 -12.437 -9.506 -12.557 -11.702 -2.435 -12.850 -3.766 -11.239 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.096 -0.000 -14.750 -10.165 1.986 -5.309 -6.181 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.096 -0.000 -14.750 -12.602 -4.613 -13.736 1.985 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.096 -0.000 -14.750 -13.381 -12.001 -14.958 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - U - * - ML 151 150 3 153 3 1 1 11 29 -16.096 -0.000 -14.750 -13.381 -12.001 -14.958 2.000 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - U - * - ML 154 153 3 156 3 1 1 9 28 -16.096 -0.000 -14.750 -13.381 -12.001 -14.958 2.000 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.096 -0.000 -14.750 1.991 -11.995 -5.432 -11.358 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 2.000 -12.035 -11.281 -11.368 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 79 150 -16.096 -0.000 -14.750 IL 165 165 2 165 3 1 4 80 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 56 - A - + - ML 166 165 2 168 3 1 3 79 150 -16.096 -0.000 -14.750 1.919 -2.803 -4.564 -4.977 D 167 165 2 168 3 0 2 77 148 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 79 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 57 - G - + - ML 169 168 3 171 2 1 2 78 149 -16.752 -0.000 -0.089 -4.339 1.563 -4.150 D 170 168 3 171 2 0 1 77 148 -8.445 -0.004 IL 171 171 3 171 2 1 3 78 149 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 77 148 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.787 -14.091 -13.499 -0.007 [ MATP 48 ] 58 75 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 59 74 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 60 73 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 61 72 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 62 71 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 63 70 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -19.978 -18.676 -14.473 -15.155 -15.173 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 64 69 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.400 -15.081 -4.798 -0.053 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 65 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.361 -0.002 -10.015 1.992 -7.486 -6.789 -6.941 D 217 215 6 218 3 0 0 8 27 -17.460 -7.263 -0.009 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 66 - U - + - ML 219 218 3 221 3 1 1 12 31 -11.580 -0.221 -2.821 -5.301 -0.803 -6.049 1.760 D 220 218 3 221 3 0 0 7 25 -17.451 -12.964 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 67 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.361 -0.002 -10.015 -7.172 -6.480 -8.122 1.992 D 223 221 3 224 3 0 0 5 24 -17.460 -12.973 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 68 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -6.031 -7.778 1.990 -6.788 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 75 146 -16.096 -0.002 -9.846 IL 230 230 2 230 3 1 1 77 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 76 - A - + - ML 231 230 2 233 3 1 3 75 146 -0.190 -3.022 -14.749 1.704 -4.727 -3.728 -0.668 D 232 230 2 233 3 0 0 74 145 -0.444 -3.584 -2.463 IL 233 233 3 233 3 1 3 74 145 -5.848 -0.025 -13.327 0.000 0.000 0.000 0.000 [ MATL 62 ] 79 - U - + - ML 234 233 3 236 5 1 3 73 144 -15.030 -0.000 -14.845 -15.057 -15.949 0.409 -1.771 -3.463 1.195 D 235 233 3 236 5 0 0 71 143 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 73 144 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 80 117 G C = = MP 237 236 3 241 6 2 3 72 143 -15.964 -6.499 -0.016 -14.680 -14.959 -15.354 -13.769 -10.525 -15.619 -0.442 -15.466 -11.730 -9.822 -15.261 -11.885 3.931 -12.093 -8.433 -10.169 -12.181 -12.246 -14.511 ML 238 236 3 241 6 1 1 73 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 70 141 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 68 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 72 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 71 142 -5.516 -0.050 -9.027 -7.195 -8.301 0.000 0.000 0.000 0.000 [ MATP 64 ] 81 115 G C = = MP 243 242 6 247 6 2 3 70 141 -15.964 -15.903 -0.006 -8.047 -14.959 -15.354 -11.971 -1.701 -12.150 2.362 -14.175 -14.620 -9.555 -12.230 -11.726 3.273 -12.362 -2.150 -9.540 -1.675 -11.426 -1.553 ML 244 242 6 247 6 1 1 73 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 68 139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 66 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 70 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 69 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 82 114 g c = = MP 249 248 6 253 6 2 2 68 139 -6.467 -15.898 -0.022 -14.674 -14.954 -8.011 -9.934 -4.396 -9.754 0.074 -4.085 -10.353 -3.144 -10.425 -3.261 2.880 -10.435 -2.973 2.767 -9.612 -1.675 -6.296 ML 250 248 6 253 6 1 1 75 146 -9.008 -9.354 -4.069 -0.111 -9.204 -6.734 1.889 -3.622 -3.141 -3.291 MR 251 248 6 253 6 1 1 65 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 64 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 73 144 -6.365 -6.628 -1.072 -1.006 -9.059 -8.720 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 67 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 84 113 G C = = MP 255 254 6 259 6 2 2 66 137 -6.298 -15.883 -0.308 -3.767 -4.602 -3.943 -9.924 -1.306 -6.088 2.157 -10.874 -10.340 -1.648 -10.431 -10.179 3.397 -10.426 -4.058 -2.592 -9.598 -4.798 -8.707 ML 256 254 6 259 6 1 1 74 145 -10.251 -10.597 -5.311 -0.046 -10.447 -7.976 1.967 -5.370 -4.805 -5.060 MR 257 254 6 259 6 1 1 60 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 54 125 -12.141 -10.840 -6.637 -7.319 -7.336 -0.034 IL 259 259 5 259 6 1 1 60 131 -6.509 -6.772 -0.039 -8.428 -9.204 -8.864 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 62 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 86 112 g c = = MP 261 260 6 265 4 2 2 59 130 -5.878 -15.087 -0.070 -5.036 -1.794 2.472 -5.343 0.726 -1.039 0.192 -3.538 -6.790 -9.886 2.658 -10.132 -2.351 -3.947 -3.295 -3.845 -6.207 ML 262 260 6 265 4 1 1 73 144 -0.257 -10.514 -2.939 -4.970 1.756 -0.756 -6.317 -5.812 MR 263 260 6 265 4 1 1 45 116 -10.801 -3.872 -1.120 -1.086 -3.217 0.840 -5.005 1.051 D 264 260 6 265 4 0 0 42 113 -11.541 -11.222 -0.864 -1.152 IL 265 265 5 265 4 1 1 73 144 -0.374 -2.677 -3.802 -13.782 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 41 78 -0.710 -1.366 -10.823 0.000 0.000 0.000 0.000 [ MATL 68 ] 93 - C - + - ML 267 266 6 269 3 1 1 29 58 -3.717 -0.119 -8.306 -1.707 1.201 -3.737 0.399 D 268 266 6 269 3 0 0 27 56 -13.820 -0.902 -1.105 IL 269 269 3 269 3 1 1 30 59 -1.322 -0.807 -5.138 0.000 0.000 0.000 0.000 [ MATL 69 ] 97 - U - + - ML 270 269 3 272 3 1 1 28 57 -16.035 -0.005 -8.328 -0.366 -0.250 -2.792 1.163 D 271 269 3 272 3 0 0 26 55 -12.948 -1.072 -0.931 IL 272 272 3 272 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 98 - C - + - ML 273 272 3 275 3 1 1 27 56 -16.060 -0.005 -8.139 -0.287 1.355 -3.596 -0.889 D 274 272 3 275 3 0 0 26 55 -12.204 -0.136 -3.482 IL 275 275 3 275 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 99 - C - + - ML 276 275 3 278 3 1 1 26 55 -4.363 -0.099 -5.808 0.240 1.099 -2.135 -1.157 D 277 275 3 278 3 0 0 22 49 -10.086 -1.065 -0.941 IL 278 278 3 278 3 1 1 29 58 -0.924 -1.082 -10.227 0.000 0.000 0.000 0.000 [ MATL 72 ] 103 - C - + - ML 279 278 3 281 3 1 1 23 50 -16.066 -0.070 -4.395 0.102 1.250 -3.262 -1.169 D 280 278 3 281 3 0 0 19 47 -11.932 -2.231 -0.346 IL 281 281 3 281 3 1 1 24 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 104 - A - + - ML 282 281 3 284 3 1 1 22 49 -4.729 -0.244 -3.083 1.257 -0.442 -0.908 -1.552 D 283 281 3 284 3 0 0 12 39 -13.528 -1.724 -0.520 IL 284 284 3 284 3 1 1 25 53 -0.970 -1.034 -9.736 0.000 0.000 0.000 0.000 [ MATL 74 ] 108 - A - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 1.190 0.137 -3.600 -0.898 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Lys-2nd-align LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:56 2015 COM [1] cmbuild --hand --enone Lys-final-vert.cm ../Lys-2nd-align.sto NSEQ 1062 EFFN 7.296227 CKSUM 2088274238 STATS LOCAL MSV -8.7455 0.71864 STATS LOCAL VITERBI -9.6662 0.71864 STATS LOCAL FORWARD -3.9079 0.71864 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27125 1.44393 1.44968 1.39080 1.38629 1.38629 1.38629 1.38629 0.02046 4.62826 4.55782 1.46634 0.26236 0.00000 * 1 4.02569 0.08450 4.05485 3.08268 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01975 4.62754 4.62754 1.46634 0.26236 1.05221 0.42950 2 0.53412 2.72106 1.31693 2.52509 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 3 2.70010 0.67999 2.50529 1.06558 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 4 2.78203 1.92800 2.63932 0.32679 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.04256 3.44537 4.62826 0.52967 0.88867 1.09861 0.40547 5 0.75774 2.48594 1.05839 2.29250 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 6 0.96311 1.88074 1.35799 1.56715 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.03353 3.76354 4.62826 0.69963 0.68671 1.09861 0.40547 7 2.19224 3.50050 0.19443 3.35666 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 8 0.13103 3.28067 3.15711 3.15459 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 9 0.06251 4.14447 3.97107 3.65376 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.04009 3.52251 4.62826 0.56698 0.83756 1.09861 0.40547 10 3.47685 3.71784 0.07039 4.36002 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 11 4.24544 0.10652 4.10831 2.65535 14 C = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 12 4.39513 3.25436 3.86801 0.07455 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 13 0.92113 1.75574 1.71750 1.38774 16 a = - < 1.38629 1.38629 1.38629 1.38629 0.05059 4.62826 3.22992 1.46634 0.26236 1.09861 0.40547 14 0.61392 2.21608 2.50034 1.31795 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.10962 4.59801 2.36706 1.46634 0.26236 1.79980 0.18072 15 0.77766 1.85315 1.84453 1.48865 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.22574 4.51062 1.65506 1.46634 0.26236 2.66426 0.07220 16 1.27217 1.35258 2.32745 1.01153 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.34373 4.31206 1.28204 1.46634 0.26236 3.42561 0.03307 17 1.05484 1.45208 2.12847 1.20848 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.38390 1.23282 3.59971 0.51888 0.90433 1.43184 0.27295 18 2.78679 3.82187 0.12664 3.33989 25 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03348 4.18120 4.03720 1.46634 0.26236 2.36627 0.09853 19 2.01402 2.93921 0.30208 2.59884 26 G + - _ 1.38629 1.38629 1.38629 1.38629 0.13678 4.21998 2.17911 1.46634 0.26236 1.30147 0.31764 20 1.00457 1.84873 1.33692 1.54315 27 a + - _ 1.38629 1.38629 1.38629 1.38629 0.67203 0.74415 4.25542 0.16840 1.86444 0.05910 2.85788 21 0.90627 1.62270 2.07994 1.29583 31 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 22 1.43619 1.47681 1.51851 1.15593 32 u = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 23 0.08790 3.98866 3.04370 4.01920 33 A = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 24 2.90379 4.23874 0.09402 3.88769 34 G = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 25 4.42808 0.07477 4.23604 3.08698 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 26 0.79265 3.06023 0.81227 2.87122 36 a + - , 1.38629 1.38629 1.38629 1.38629 0.02695 4.08510 4.62826 0.92168 0.50725 1.09861 0.40547 27 2.08819 1.21848 2.05338 0.79383 38 u = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 28 3.69727 1.79544 3.50708 0.24952 39 U = - < 1.38629 1.38629 1.38629 1.38629 0.02686 4.09065 4.62826 0.92604 0.50438 1.09861 0.40547 29 0.16841 4.30883 2.09616 3.98369 41 A = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 30 1.50366 3.44963 0.34466 3.28429 42 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 31 3.57391 0.12945 3.77523 2.65291 43 C = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 32 3.95736 0.07008 4.14576 3.41936 44 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 33 3.67127 3.28498 4.19680 0.08113 45 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 34 3.99402 3.76174 4.54321 0.05373 46 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 35 3.99402 3.76174 4.54321 0.05373 47 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 36 3.99402 3.76174 4.54321 0.05373 48 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 37 0.04495 4.48886 3.93731 4.32602 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 38 0.03520 4.66493 4.28950 4.46959 50 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 39 2.89352 3.93564 0.11623 3.35772 51 G = - > 1.38629 1.38629 1.38629 1.38629 0.02003 4.62826 4.59911 1.46634 0.26236 1.09861 0.40547 40 3.52226 0.38992 3.26143 1.36641 52 C = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62797 4.62797 1.46634 0.26236 1.07927 0.41528 41 4.16661 2.30367 4.08174 0.14188 53 U = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 42 0.29867 3.66755 1.61890 3.36574 54 A = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 43 0.87847 2.23803 1.09708 1.93746 55 a = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 44 0.14567 2.97266 3.19689 3.13489 56 A + - , 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 45 1.46153 3.01330 0.42885 2.69218 57 G + - , 1.38629 1.38629 1.38629 1.38629 1.63252 4.62826 0.22967 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 47 1.80297 1.30594 1.07730 1.49718 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 48 1.80059 1.30667 1.07819 1.49670 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 49 1.79953 1.30700 1.07859 1.49648 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 50 1.79910 1.30713 1.07874 1.49640 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 51 1.79900 1.30716 1.07878 1.49638 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 52 1.79904 1.30715 1.07877 1.49639 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.06688 0.04769 53 0.71876 1.96143 1.78167 1.59145 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.08380 3.21409 3.21409 1.46634 0.26236 3.98571 0.01875 54 1.45920 1.56545 1.91793 0.88753 66 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10349 3.23378 2.83180 1.46634 0.26236 4.38153 0.01259 55 1.45461 1.69869 1.87779 0.84244 67 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08380 3.21409 3.21409 1.46634 0.26236 4.38770 0.01251 56 1.36109 1.97566 0.91133 1.59474 68 g + - _ 1.38629 1.38629 1.38629 1.38629 0.21836 3.21409 1.85810 1.46634 0.26236 4.38770 0.01251 57 1.73030 1.22019 1.16209 1.53823 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 58 1.73022 1.22022 1.16212 1.53820 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 59 1.73022 1.22022 1.16212 1.53820 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 60 1.73038 1.22016 1.16206 1.53825 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 61 1.73080 1.21997 1.16190 1.53837 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 62 1.73172 1.21958 1.16157 1.53864 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.42287 0.01207 63 1.73350 1.21882 1.16092 1.53917 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02429 3.72973 64 0.34532 2.73852 2.72072 1.82316 76 A + - , 1.38629 1.38629 1.38629 1.38629 1.23227 0.35868 4.62826 0.04406 3.14405 1.09861 0.40547 65 1.19675 2.02317 2.38127 0.74833 79 u + - , 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 66 2.82377 4.35642 0.09007 4.27420 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 67 1.33909 2.69633 0.55186 2.35826 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 68 1.93782 1.95558 0.91900 1.15334 82 g = - < 1.38629 1.38629 1.38629 1.38629 0.03197 3.98128 4.35792 0.84360 0.56240 1.09861 0.40547 69 1.38538 2.61098 0.51913 2.51000 84 G = - < 1.38629 1.38629 1.38629 1.38629 0.11940 3.92560 2.37712 0.80645 0.59139 1.19707 0.35965 70 1.21342 1.71161 1.11608 1.63637 86 g = - < 1.38629 1.38629 1.38629 1.38629 0.12386 2.49487 3.38159 1.48054 0.25814 0.71247 0.67419 71 1.95984 0.76072 2.72124 1.12087 93 c + - _ 1.38629 1.38629 1.38629 1.38629 0.08253 2.71193 4.35746 0.67509 0.71154 0.75515 0.63477 72 1.48128 1.54808 2.32417 0.77190 97 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02280 4.59750 4.38477 1.46634 0.26236 0.95784 0.48406 73 1.54008 0.69266 2.65926 1.53529 98 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02294 4.60856 4.36524 1.46634 0.26236 0.56642 0.83830 74 1.25459 0.91059 2.26460 1.56711 99 c + - _ 1.38629 1.38629 1.38629 1.38629 0.07449 3.03712 3.73783 0.88370 0.53316 1.04068 0.43574 75 1.34879 0.78313 2.53809 1.58740 103 c + - _ 1.38629 1.38629 1.38629 1.38629 0.05875 4.61202 3.05499 1.46634 0.26236 1.23780 0.34252 76 0.72752 1.71622 1.87037 1.69781 104 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14838 3.23142 2.31874 0.89719 0.52377 1.15799 0.37705 77 0.76905 1.45883 2.35891 1.56296 108 a + - _ 1.38629 1.38629 1.38629 1.38629 0.13159 2.87799 2.70231 0.81159 0.58726 0.38239 1.14642 78 1.78882 0.88778 1.66077 1.46411 112 c = - > 1.38629 1.38629 1.38629 1.38629 0.02139 4.54848 4.54848 1.46634 0.26236 0.33639 1.25297 79 2.77361 0.56487 2.42378 1.27103 113 C = - > 1.38629 1.38629 1.38629 1.38629 0.01995 4.61747 4.61747 1.46634 0.26236 0.82524 0.57649 80 1.26698 1.00042 1.74938 1.73324 114 c = - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62529 4.62529 1.46634 0.26236 0.93029 0.50160 81 2.80670 0.59931 2.50163 1.17619 115 C = - > 1.38629 1.38629 1.38629 1.38629 0.02868 3.99009 4.62826 0.84997 0.55761 1.09861 0.40547 82 4.39429 0.10606 4.19580 2.61429 117 C = - > 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 83 3.58417 0.24108 3.25544 1.91121 118 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 84 1.78146 1.34514 1.68026 0.95508 119 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02760 4.04858 4.62826 0.89345 0.52634 1.09861 0.40547 85 2.53318 1.15586 2.26961 0.68825 121 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 86 0.35832 2.76557 1.83725 2.53888 122 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 87 1.18036 2.68500 0.61266 2.49251 123 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 88 2.81586 1.50963 2.64793 0.43331 124 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01974 4.62826 4.62826 1.46634 0.26236 1.09861 0.40547 89 3.34618 4.21469 0.07273 3.90426 125 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02046 4.62826 4.55782 1.46634 0.26236 1.09861 0.40547 90 0.30788 3.01625 1.87736 2.76434 126 A + - : 1.38629 1.38629 1.38629 1.38629 0.00992 4.61772 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/ESELC.cm0000644000543100007160000012017311021467310016036 0ustar pchanlowelab### cove V2 65 nodes ### node 0 type 6 1 -1 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 1 2 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.26087 0.08696 0.08696 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 2 type 1 3 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.08696 0.30435 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 3 type 1 4 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.34783 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 4 type 1 5 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.34783 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 5 type 1 6 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.08696 0.04348 # MATP 0.04348 0.30435 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 6 type 1 7 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.08696 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.30435 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 7 type 1 8 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.30435 # MATP 0.04348 0.04348 0.08696 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 8 type 1 9 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.08696 0.30435 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 9 type 1 10 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.09091 0.00000 0.72727 0.00000 0.09091 0.09091 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.30435 0.04348 0.08696 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 10 type 2 11 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.72727 0.09091 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 2 12 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.88889 0.00000 0.00000 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.27273 0.27273 0.09091 0.36364 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 0 13 24 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 4 14 -1 0.09091 0.72727 0.09091 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 14 type 1 15 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.34783 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 15 type 1 16 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.30435 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.08696 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 16 type 1 17 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.08696 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.30435 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 17 type 1 18 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.30435 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.08696 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 18 type 1 19 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.26087 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.08696 0.04348 0.08696 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 19 type 1 20 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.09091 0.00000 0.72727 0.00000 0.09091 0.09091 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.34783 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 20 type 2 21 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.18182 0.09091 0.63636 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.72727 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.72727 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.88889 0.00000 0.00000 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.09091 0.72727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 5 25 -1 0.88889 0.00000 0.00000 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 0 26 40 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 4 27 -1 0.09091 0.72727 0.09091 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 1 28 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.34783 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 28 type 1 29 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.34783 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 29 type 1 30 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.34783 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 30 type 1 31 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.30435 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.08696 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 31 type 1 32 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.34783 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 32 type 1 33 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.09091 0.00000 0.72727 0.00000 0.09091 0.09091 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.13043 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.26087 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 33 type 2 34 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.72727 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.09091 0.72727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.09091 0.72727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.72727 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.72727 0.09091 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.72727 0.09091 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.88889 0.00000 0.00000 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.72727 0.09091 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 5 41 -1 0.88889 0.00000 0.00000 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 0 42 53 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 4 43 -1 0.09091 0.72727 0.09091 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 1 44 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.34783 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 44 type 1 45 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.26087 0.04348 # MATP 0.04348 0.08696 0.04348 0.04348 # MATP 0.08696 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 45 type 1 46 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.13043 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.26087 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 46 type 1 47 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.34783 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 47 type 1 48 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.08696 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.08696 0.04348 0.04348 # MATP 0.26087 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 48 type 1 49 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.09091 0.00000 0.72727 0.00000 0.09091 0.09091 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.21739 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.17391 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 49 type 2 50 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.09091 0.72727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 50 type 2 51 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.63636 0.09091 0.09091 0.18182 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 51 type 2 52 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.72727 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 52 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.88889 0.00000 0.00000 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.72727 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 53 type 5 54 -1 0.08333 0.66667 0.08333 0.08333 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 1 55 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.30435 0.04348 0.08696 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 55 type 1 56 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.34783 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 56 type 1 57 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.07692 0.61538 0.07692 0.07692 0.07692 0.07692 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.34783 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 57 type 1 58 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.09091 0.00000 0.72727 0.00000 0.09091 0.09091 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.04348 0.34783 0.04348 0.04348 # MATP 0.04348 0.04348 0.04348 0.04348 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 58 type 2 59 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.09091 0.72727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.09091 0.72727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 2 61 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.72727 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 61 type 2 62 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.54545 0.09091 0.27273 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 62 type 2 63 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.72727 0.09091 0.09091 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 63 type 2 64 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.10000 0.00000 0.80000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.18182 0.09091 0.63636 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 64 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.88889 0.00000 0.00000 0.00000 0.11111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.09091 0.09091 0.72727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal.i1m0000644000543100007160000352655013054731276020774 0ustar pchanlowelab!LZ  !!!!!!""""""###$$$%%%&&&'''((()))*++,,,---./000000111111222222333333444444555555666666777888999:::;<<===>>>??????@@@@@@AAAAAABBBBBBCCCCCCDDDEEEFFFGGGHHHIIIJJJK                                                         """""#((((()...../222555789:>>>>>?DDDDDEJJJJJKPPPPPQTTTWWWZZZ]]]```cccfffiiilloootttttuzzzzz{         k "#####())))).///222556789999>?????DEEEEEJKKKKKPQQQTTTWWWZZZ]]]```cccfffii8llloooootuuuuuz{{{{{6        $*036789:@FLRUX[^adgjkmpv|  '(0$'0%%"&'.%%"&&,%%"&&+%$"%&)$$!%%'$#!$$%#"!$##!#"!"! cddcacb``^aa`^^\__^\\Z]]\ZZX[[ZXXVYYXWWUWWVVVUWWTRVSRTR**     #     252141020!     !%! $            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I?Ī>t*?q?r<>+=Nl>D?Ī>t*?NQj?X&=4=l:>b?AdT>#J?Mw?@x<@xD?)3?jw>eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?eix?rD?Ī>t*?%|?pv<Nl>D??Ala =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ GAGGgcUUAGCUUAAUUauuAAAGUGuuUGAUUUGCAUUCAguUGgggggggaaaagggggggAUGUAAGAUAuAgUCUUGCAGUCCUUA (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))):8cmbuild --hand --enone Ala_model.cm aligntRNAdb-Ala.sto~@Sun Mar 1 17:49:00 2015  !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHKLMOPSTUVWXYZ[\]^_`լ-Lnj7?j7?\j7?OǀOǀOǀOǀOǀO >w5>kz>q>!LZ  !!!!!!""""""###$$$%%%&&&'''((()))*++,,,---./000000111111222222333333444444555555666666777888999:::;<<===>>>??????@@@@@@AAAAAABBBBBBCCCCCCDDDEEEFFFGGGHHHIIIJJJK                                                         """""#((((()...../222555789:>>>>>?DDDDDEJJJJJKPPPPPQTTTWWWZZZ]]]```cccfffiiilloootttttuzzzzz{         k "#####())))).///222556789999>?????DEEEEEJKKKKKPQQQTTTWWWZZZ]]]```cccfffii8llloooootuuuuuz{{{{{6        $*036789:@FLRUX[^adgjkmpv|  &'."%.$$ %%,$# %%*## $%(##$$&""##$"!"""! !!   defdcdcaa_cba__]a`_]][_^]\[Y]\[ZYW[ZYXXVYXWWWUXXUTWTSUS**    #     353242131!     $'$#&#"$"! 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'?_>E>JcW<Ȩ>Nl>D?=wa?K?-:>G?Ɗt?U7=#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?.w?]D?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?A{>PI?Nl>D?Ī>t*?1h?.:=.:=Nl>D? D? D? D? D? D? D?~">L^?kn? = =Nl>D?u<`{?kn? = =Nl>D?u<`{?dE? =zH>Nl>D?u<`{?we?'=D=Nl>D?V<{{?~V?+=l=Nl>D?:<&{?1h?.:=.:=Nl>D? D? D? D? D? D?j?ͪ=38q?-8=AQߘ-?'Τ>=s?PID?Ī>t*?y?XjND?\G>(N?Cx?XjND?\G>(N?zX?{g<=2>\?9>Q? !%?ki<&r>Nl>D?=n?RN?G<|/>Nl>D?.>{?h?J=_w<% ?>Ml2?'>v?w\<5D?M?H>dpx?"J< D?>ts;?[#]?c<=h>fK??>bT?S]<N>Nl>D?Ρ@>O?\??*u=BE>>?YL=A:s?mG?+r=,>$>>2??>v?[<[D?p\N?ݍF>@o?LEW=+R<%?(>4?‚>#y?PID?Ī>t*?Qu??Ī>t*?}pt?=PI<@f?2>Ī>t*?w?=?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?#y?PID?Ī>t*?|?K<Nl>D??Val =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ CAagGuGUAGCUUAAauacuAAAGCAuCuGGCUUACACCCaGaAGgggggggAuuagggggggAUuuCAuuuCaAaugUGaaCaCcuUGA (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))):8cmbuild --hand --enone Val_model.cm aligntRNAdb-Val.sto@Sun Mar 1 17:56:43 2015  "#$%&'()*+,-./0123456789:;<=>?ABCDEFGHKLMNPQRUVWYZ]abdegiklmnopq gN?W 7?d7?2r7?OǀOǀOǀOǀOǀO>t>X>-z>tRNAscan-SE-2.0/lib/models/TRNA2-archns.cm0000644000543100007160000016402311021467310017307 0ustar pchanlowelab### cove V2 94 nodes ### node 0 type 6 1 -1 0.01515 0.00000 0.92424 0.00000 0.04545 0.01515 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.00000 0.50000 0.00000 0.16667 0.16667 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.16667 0.16667 0.50000 0.16667 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 2 2 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06061 0.04545 0.87879 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 2 type 2 3 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.46970 0.46970 0.04545 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 3 type 2 4 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06061 0.39394 0.50000 0.04545 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 4 type 2 5 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06061 0.48485 0.36364 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 5 type 2 6 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07576 0.57576 0.19697 0.15152 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 6 type 2 7 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06061 0.37879 0.45455 0.10606 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 7 type 2 8 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.01515 0.77273 0.04545 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 8 type 2 9 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03077 0.00000 0.95385 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.03030 0.01515 0.93939 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 9 type 2 10 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01562 0.00000 0.95312 0.00000 0.03125 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.52308 0.06154 0.38462 0.03077 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 10 type 2 11 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.09091 0.87879 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 2 12 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.59091 0.12121 0.27273 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 2 13 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04545 0.33333 0.19697 0.42424 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 2 14 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07576 0.37879 0.13636 0.40909 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 14 type 2 15 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.95455 0.01515 0.01515 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 15 type 2 16 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.95455 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 16 type 2 17 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.18462 0.00000 0.80000 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07576 0.54545 0.03030 0.34848 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 17 type 2 18 -1 0.07143 0.00000 0.85714 0.00000 0.07143 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01852 0.00000 0.16667 0.00000 0.81481 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02174 0.00000 0.95652 0.00000 0.02174 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.17021 0.23404 0.02128 0.57447 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07273 0.67273 0.01818 0.23636 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 18 type 2 19 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.95455 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 19 type 2 20 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.95455 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 20 type 2 21 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.50769 0.00000 0.47692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01961 0.00000 0.60784 0.00000 0.37255 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.46154 0.01923 0.26923 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.12121 0.25758 0.13636 0.48485 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.92424 0.01515 0.04545 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.06061 0.54545 0.22727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.42424 0.21212 0.33333 0.03030 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 25 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.27273 0.12121 0.59091 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 2 26 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.63636 0.09091 0.25758 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10606 0.03030 0.77273 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 2 28 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10606 0.62121 0.09091 0.18182 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 2 29 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15152 0.53030 0.13636 0.18182 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 2 30 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06061 0.15152 0.62121 0.16667 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 30 type 2 31 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.21212 0.75758 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 31 type 2 32 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.28788 0.39394 0.28788 0.03030 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 32 type 2 33 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.75758 0.01515 0.21212 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 33 type 2 34 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.01515 0.95455 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.28788 0.27273 0.42424 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.27273 0.15152 0.31818 0.25758 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.34848 0.18182 0.30303 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.87692 0.00000 0.10769 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00877 0.00000 0.06140 0.00000 0.92982 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.26957 0.19130 0.29565 0.24348 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.54545 0.01515 0.42424 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.80303 0.13636 0.03030 0.03030 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03030 0.27273 0.39394 0.30303 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 41 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.74242 0.21212 0.03030 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 2 42 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.62121 0.15152 0.06061 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.09091 0.54545 0.19697 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 44 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10606 0.09091 0.69697 0.10606 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 2 45 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.15385 0.00000 0.83077 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.39394 0.18182 0.06061 0.36364 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 2 46 -1 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10526 0.07018 0.70175 0.12281 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 2 47 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.23077 0.61538 0.07692 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 47 type 2 48 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15385 0.30769 0.46154 0.07692 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 48 type 2 49 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.66667 0.00000 0.25000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15385 0.53846 0.07692 0.23077 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 49 type 2 50 -1 0.96825 0.00000 0.01587 0.00000 0.01587 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.33333 0.16667 0.33333 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 50 type 2 51 -1 0.96825 0.00000 0.01587 0.00000 0.01587 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60000 0.00000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.50000 0.16667 0.16667 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 51 type 2 52 -1 0.96923 0.00000 0.01538 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 52 type 2 53 -1 0.83077 0.00000 0.15385 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 53 type 2 54 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.07692 0.69231 0.15385 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 2 55 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.15385 0.07692 0.69231 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 55 type 2 56 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.00000 0.75000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.53846 0.15385 0.07692 0.23077 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 56 type 2 57 -1 0.96491 0.00000 0.01754 0.00000 0.01754 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.54545 0.00000 0.09091 0.00000 0.36364 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.66667 0.00000 0.16667 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.42857 0.14286 0.28571 0.14286 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.16667 0.50000 0.08333 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 2 58 -1 0.96923 0.00000 0.01538 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.93846 0.00000 0.04615 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.96825 0.00000 0.01587 0.00000 0.01587 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.16667 0.50000 0.16667 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 2 61 -1 0.85714 0.00000 0.12698 0.00000 0.01587 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.33333 0.16667 0.33333 0.16667 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 61 type 2 62 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15385 0.07692 0.61538 0.15385 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 62 type 2 63 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.46154 0.30769 0.15385 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 63 type 2 64 -1 0.01786 0.00000 0.96429 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.00000 0.75000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.53846 0.23077 0.15385 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 64 type 2 65 -1 0.25000 0.00000 0.25000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01562 0.00000 0.25000 0.00000 0.73438 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01961 0.00000 0.94118 0.00000 0.03922 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03846 0.28846 0.07692 0.59615 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.36923 0.03077 0.47692 0.12308 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 65 type 2 66 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.95455 0.01515 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 66 type 2 67 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07576 0.37879 0.42424 0.12121 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 67 type 2 68 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.54545 0.18182 0.18182 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06061 0.12121 0.75758 0.06061 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04545 0.01515 0.90909 0.03030 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.95455 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 72 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.01515 0.95455 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 72 type 2 73 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.03030 0.01515 0.93939 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 73 type 2 74 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.93939 0.03030 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 74 type 2 75 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.59091 0.01515 0.37879 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 75 type 2 76 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.95455 0.01515 0.01515 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 76 type 2 77 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.84848 0.01515 0.09091 0.04545 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 77 type 2 78 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.06061 0.01515 0.90909 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 78 type 2 79 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.95455 0.01515 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 79 type 2 80 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03030 0.90909 0.01515 0.04545 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 80 type 2 81 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03030 0.75758 0.15152 0.06061 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 81 type 2 82 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.13636 0.56061 0.13636 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 82 type 2 83 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04545 0.36364 0.45455 0.13636 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 83 type 2 84 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04545 0.72727 0.01515 0.21212 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 84 type 2 85 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06061 0.45455 0.42424 0.06061 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 85 type 2 86 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10606 0.19697 0.62121 0.07576 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 86 type 2 87 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07576 0.34848 0.50000 0.07576 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 87 type 2 88 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04545 0.30303 0.39394 0.25758 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 88 type 2 89 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04545 0.46970 0.46970 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 89 type 2 90 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.87879 0.04545 0.06061 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 90 type 2 91 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.81538 0.00000 0.16923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.63636 0.04545 0.21212 0.10606 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 91 type 2 92 -1 0.96364 0.00000 0.01818 0.00000 0.01818 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.15385 0.00000 0.76923 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07143 0.71429 0.07143 0.14286 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 92 type 2 93 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.76923 0.07692 0.07692 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 93 type 2 -1 -1 0.98182 0.00000 0.00000 0.00000 0.01818 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.90909 0.00000 0.00000 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.76923 0.07692 0.07692 0.07692 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Pro.cm0000644000543100007160000017240712573631164021436 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Pro STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:55:14 2015 COM [1] cmbuild --hand --enone Pro_model.cm aligntRNAdb-Pro.sto COM [2] cmcalibrate --seed 208 Pro_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 2580016069 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.6791 0.71874 ECMLC 0.56470 -9.36018 1.50720 1600000 555074 0.002162 ECMGC 0.30665 -49.17221 -33.25022 1600000 52782 0.007578 ECMLI 0.57672 -8.78445 1.81486 1600000 541939 0.002214 ECMGI 0.31996 -44.49556 -29.38803 1600000 50276 0.007956 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 125 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 36 101 126 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 38 101 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 99 - A - + MR 3 2 3 5 5 22 45 99 125 -13.126 -0.001 -12.941 -13.153 -14.045 1.977 -5.293 -4.850 -8.801 D 4 2 3 5 5 14 33 98 123 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 36 100 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 98 C G = = MP 6 5 3 10 6 22 44 98 124 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 7 5 3 10 6 15 34 97 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 34 97 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 31 94 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 35 98 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 36 98 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 97 A U = = MP 12 11 6 16 6 22 43 96 122 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 13 11 6 16 6 15 34 95 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 34 95 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 30 92 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 35 96 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 35 96 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 96 g u = = MP 18 17 6 22 6 22 41 94 120 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.100 -8.758 -10.295 2.199 -12.435 -13.561 -7.892 -10.338 -9.854 2.112 -10.523 2.821 -7.817 -11.595 -9.723 -8.894 ML 19 17 6 22 6 15 34 93 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 34 93 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 30 90 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 35 94 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 35 94 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 95 G C = = MP 24 23 6 28 6 20 39 92 118 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.407 -8.658 -12.370 1.188 -13.324 -10.074 -7.928 -12.270 -9.975 3.769 -10.253 -3.715 -8.197 -10.439 -10.237 -11.058 ML 25 23 6 28 6 15 33 91 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 33 91 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 30 88 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 34 92 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 35 92 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 94 G C = = MP 30 29 6 34 6 18 37 90 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.591 -8.706 -10.960 2.295 -12.792 -10.978 -7.899 -10.978 -9.910 3.434 -10.383 -1.901 -7.981 -10.911 -9.940 -9.576 ML 31 29 6 34 6 14 33 89 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 33 89 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 30 86 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 34 90 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 34 90 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 93 A U = = MP 36 35 6 40 6 16 35 88 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.863 -12.435 -13.590 -7.893 -10.336 -9.854 -1.520 -10.524 0.113 -7.817 -11.599 -9.723 -8.892 ML 37 35 6 40 6 14 32 87 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 32 87 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 30 85 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 33 88 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 33 88 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 92 A U = = MP 42 41 6 46 4 14 33 86 112 -13.280 -13.487 -0.001 -11.901 -10.103 -8.757 -10.300 3.156 -12.436 -13.478 -7.888 -10.343 -9.854 2.436 -10.521 0.726 -7.816 -11.582 -9.722 -8.899 ML 43 41 6 46 4 13 31 86 112 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 30 86 111 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 29 85 110 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 32 87 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 32 87 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 12 31 84 110 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 29 83 108 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 31 86 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 11 30 83 109 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 10 29 82 108 -8.445 -0.004 IL 53 53 3 53 2 12 30 84 110 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 29 82 108 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G U = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 -2.529 -12.434 -13.588 -7.892 -10.337 -9.854 1.245 -10.524 3.748 -7.817 -11.599 -9.723 -8.892 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 U A = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.101 -11.347 -10.426 -7.586 -8.785 -10.578 -4.497 -9.696 -2.258 -7.570 -10.650 -9.692 3.938 -10.946 -1.315 -9.329 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.039 -10.975 -10.448 -7.253 -8.899 -10.687 -4.623 -9.762 -10.470 -7.328 -10.672 -8.945 3.958 -10.963 -6.538 -1.388 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U G = = MP 76 75 6 80 4 2 3 17 36 -13.280 -13.487 -0.001 -11.901 -11.109 -11.388 -3.341 -7.625 -8.778 -10.571 -2.718 -9.693 -10.530 -7.598 -2.259 -9.788 -1.276 -10.944 3.917 -9.332 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 33 -14.190 -0.109 -3.780 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.081 -1.235 -0.798 1.766 -7.338 -2.146 -1.444 D 86 84 3 87 3 0 0 13 31 -11.854 -7.367 -0.009 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 14 32 -12.847 -0.279 -2.507 -1.306 -0.988 -3.511 1.587 D 89 87 3 90 3 0 0 12 30 -14.889 -10.402 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 13 31 -12.568 -5.189 -0.040 -0.538 -1.656 -5.978 1.574 D 92 90 3 93 3 0 0 12 30 -15.045 -0.044 -5.070 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - g - + - ML 94 93 3 96 3 1 1 12 30 -13.602 -0.000 -12.256 0.604 -6.757 0.833 -0.537 D 95 93 3 96 3 0 0 10 28 -14.037 -9.550 -0.002 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 97 96 3 99 3 1 1 10 29 -13.602 -1.711 -0.526 -0.035 -2.792 -0.582 1.145 D 98 96 3 99 3 0 0 9 27 -14.037 -9.550 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 14 -3.282 -0.158 -10.546 -1.587 -2.635 -5.481 1.801 D 101 99 3 102 3 0 0 6 12 -6.016 -0.024 -9.675 IL 102 102 3 102 3 1 1 7 13 -4.199 -0.094 -6.899 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.957 -9.696 -9.312 -3.130 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - u - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.267 -2.764 -0.023 0.736 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -2.847 -10.571 1.453 -9.692 -10.530 -7.599 -10.650 -9.795 3.582 -10.943 0.179 -9.332 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 C G = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -1.924 3.841 -9.692 -10.530 -7.600 -10.650 -9.796 -0.806 -10.943 -0.288 -9.332 ML 119 117 6 122 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.011 -7.077 -13.073 -13.468 -10.099 -8.759 -10.294 3.921 -12.434 -13.590 -7.893 -10.336 -9.854 -0.858 -10.524 -1.829 -7.817 -11.599 -9.723 -8.892 ML 125 123 6 128 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 g u = = MP 130 129 6 134 6 2 2 20 39 -14.067 -14.007 -0.001 -12.783 -13.063 -13.458 -10.180 -8.737 -10.402 -0.857 -12.494 -12.520 -7.885 -10.441 -9.855 2.921 -10.482 2.974 -7.841 -11.414 -9.758 -9.003 ML 131 129 6 134 6 1 1 22 41 -8.260 -8.607 -0.231 -3.015 -8.456 -5.986 -1.718 -2.959 1.753 -2.346 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 C G = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.856 -9.692 -10.530 -7.600 -10.650 -9.795 0.056 -10.943 -1.127 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - G - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -2.292 -3.754 -2.379 1.819 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 51 77 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 53 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - U - + - ML 166 165 2 168 3 1 4 51 77 -14.190 -0.000 -12.844 -2.288 -1.876 -3.488 1.780 D 167 165 2 168 3 0 3 49 75 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 3 50 76 -14.843 -0.000 -1.164 -10.245 1.828 -9.345 D 170 168 3 171 2 0 2 49 75 -8.445 -0.004 IL 171 171 3 171 2 1 3 51 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 49 75 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 36 62 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 39 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - G - + - ML 231 230 2 233 3 1 3 36 62 -5.024 -0.045 -12.844 -5.205 -10.299 1.966 -3.926 D 232 230 2 233 3 0 0 34 60 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 36 62 -4.105 -0.100 -6.805 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - U - + - ML 234 233 3 236 5 1 3 35 61 -13.126 -0.001 -12.941 -13.153 -14.045 -4.431 -1.254 -4.036 1.796 D 235 233 3 236 5 0 0 34 59 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 35 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 91 G C = = MP 237 236 3 241 6 2 4 34 60 -14.078 -5.778 -0.027 -12.794 -13.073 -13.468 -10.515 -8.711 -10.851 1.294 -12.734 -11.141 -7.892 -10.875 -9.902 3.388 -10.399 1.616 -7.953 -10.980 -9.904 -9.465 ML 238 236 3 241 6 1 1 33 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 33 59 -4.543 -0.099 -8.054 -6.222 -7.328 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 89 G U = = MP 243 242 6 247 6 2 3 32 58 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 1.868 -12.435 -13.589 -7.893 -10.337 -9.854 1.178 -10.524 3.332 -7.817 -11.599 -9.723 -8.892 ML 244 242 6 247 6 1 1 31 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 88 g c = = MP 249 248 6 253 6 2 2 30 56 -14.078 -5.469 -0.044 -12.794 -13.073 -7.087 -10.133 -8.751 -10.337 2.304 -12.454 -13.039 -7.882 -10.380 -9.857 2.831 -10.509 1.974 -7.822 -11.514 -9.731 -8.938 ML 250 248 6 253 6 1 1 29 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 28 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 26 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 29 54 -4.788 -0.812 -8.299 -1.375 -7.573 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 86 G C = = MP 255 254 6 259 6 2 2 28 54 -14.052 -13.991 -0.870 -7.293 -3.388 -1.511 -9.081 -7.712 -9.017 1.045 -10.357 -9.950 -5.475 -9.498 -9.138 3.589 -2.323 0.339 -5.695 -9.129 -1.718 -3.684 ML 256 254 6 259 6 1 1 27 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 25 51 -9.244 -7.973 -3.882 -7.952 -0.138 -6.165 -2.333 -3.655 1.848 -3.037 D 258 254 6 259 6 0 0 25 50 -11.329 -10.027 -5.824 -6.507 -6.524 -0.060 IL 259 259 5 259 6 1 1 28 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 85 C G = = MP 261 260 6 265 4 2 2 27 53 -12.360 -12.567 -0.389 -2.085 -7.508 -7.210 -1.970 0.199 -6.375 -8.351 3.415 -7.028 -7.367 0.181 -7.880 -1.294 0.367 -7.691 0.049 -6.087 ML 262 260 6 265 4 1 1 25 51 -5.295 -5.477 -2.043 -0.495 0.876 -0.122 -1.061 -0.384 MR 263 260 6 265 4 1 1 24 49 -10.284 -9.313 -2.824 -0.224 0.363 -3.862 1.153 -1.243 D 264 260 6 265 4 0 0 25 50 -12.024 -11.705 -0.595 -1.568 IL 265 265 5 265 4 1 1 28 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - U - + - ML 267 266 6 269 3 1 1 25 51 -4.505 -0.091 -5.892 -2.398 -2.719 -1.637 1.738 D 268 266 6 269 3 0 0 16 41 -14.068 -0.251 -2.649 IL 269 269 3 269 3 1 1 29 54 -1.035 -0.980 -7.608 0.000 0.000 0.000 0.000 [ MATL 69 ] 76 - U - + - ML 270 269 3 272 3 1 1 16 32 -14.094 -0.065 -4.500 -0.811 -3.958 0.070 1.212 D 271 269 3 272 3 0 0 15 32 -11.692 -0.173 -3.150 IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 77 - u - + - ML 273 272 3 275 3 1 1 15 31 -14.120 -0.000 -12.774 0.397 -0.898 -1.179 0.769 D 274 272 3 275 3 0 0 14 31 -11.261 -0.149 -3.356 IL 275 275 3 275 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 78 - G - + - ML 276 275 3 278 3 1 1 14 30 -5.835 -0.350 -2.335 -0.007 -4.383 1.151 -0.442 D 277 275 3 278 3 0 0 13 29 -8.040 -0.303 -2.431 IL 278 278 3 278 3 1 1 14 30 -3.450 -0.161 -6.150 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - A - + - ML 279 278 3 281 3 1 1 13 29 -13.873 -0.351 -2.213 1.132 -3.632 -0.467 0.007 D 280 278 3 281 3 0 0 10 28 -13.278 -8.791 -0.003 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 81 - U - + - ML 282 281 3 284 3 1 1 12 24 -3.460 -0.484 -2.364 -1.042 -3.577 0.500 1.012 D 283 281 3 284 3 0 0 6 18 -14.181 -4.692 -0.057 IL 284 284 3 284 3 1 1 12 25 -2.123 -0.493 -4.064 0.000 0.000 0.000 0.000 [ MATL 74 ] 84 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.025 -3.248 -0.107 0.962 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Pro LENG 90 MAXL 172 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:55:14 2015 COM [1] cmbuild --hand --enone Pro_model.cm aligntRNAdb-Pro.sto NSEQ 282 EFFN 3.937225 CKSUM 2580016069 STATS LOCAL MSV -8.8411 0.71874 STATS LOCAL VITERBI -9.8066 0.71874 STATS LOCAL FORWARD -3.6258 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44932 1.72203 1.26211 1.19234 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 0.00000 * 1 3.86355 0.12277 3.71816 2.65549 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 2 0.15828 3.59070 2.43029 3.48015 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 3 1.30817 2.89723 0.49693 2.71634 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 4 1.95893 3.25702 0.25310 3.12129 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 5 1.44493 2.91684 0.43510 2.76567 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 6 0.29163 3.49023 1.69465 3.24932 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 7 0.96107 2.77906 0.72985 2.61130 7 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 8 3.22225 3.08696 3.75783 0.11523 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 9 0.07878 3.87624 3.54389 3.64463 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 10 2.13824 3.49132 0.20706 3.25166 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 11 3.79704 2.81437 3.52670 0.11854 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 12 3.88487 2.91492 3.69883 0.10482 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 13 2.92584 1.77359 2.68279 0.34491 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 14 0.07878 3.87624 3.54389 3.64463 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08188 4.26525 2.73995 1.46634 0.26236 1.09861 0.40547 15 0.39334 2.55096 2.23815 1.96229 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.54499 4.21341 0.90299 1.46634 0.26236 1.88654 0.16440 16 1.57168 1.68635 2.14055 0.71433 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.14130 3.71820 2.23036 1.46634 0.26236 3.49630 0.03078 17 1.44717 1.73739 2.11490 0.75899 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.62934 3.63132 0.81968 1.46634 0.26236 0.08442 2.51387 18 1.09232 2.13186 1.16056 1.45828 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03732 3.99999 3.99999 1.46634 0.26236 2.97479 0.05241 19 1.30776 1.91708 1.74333 0.89747 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.60758 3.99999 0.82778 1.46634 0.26236 2.49876 0.08576 20 1.51810 1.75749 2.06525 0.73063 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09841 2.76767 3.47652 0.80009 0.59654 0.04899 3.04061 21 0.13649 3.37120 3.21726 2.93423 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 22 2.13525 2.96481 0.26511 2.76318 23 G = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 23 0.12355 3.88021 2.74023 3.47317 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 24 0.13668 3.76072 2.58377 3.54057 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 25 3.41663 1.51254 3.25691 0.34486 26 U = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 26 1.20168 1.99941 1.53960 1.05146 27 u + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 27 2.70353 1.27388 2.47956 0.56298 28 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 28 3.05561 0.31077 2.83907 1.82300 29 C = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 29 0.23881 3.56800 1.90522 3.34008 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 30 2.03058 3.06750 0.26573 2.89039 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 31 3.20793 0.31701 3.00576 1.70520 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 32 3.22225 3.08696 3.75783 0.11523 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 33 3.22225 3.08696 3.75783 0.11523 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 34 3.22225 3.08696 3.75783 0.11523 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 35 3.32424 4.27331 0.07427 3.83317 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 36 3.32424 4.27331 0.07427 3.83317 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 37 3.32424 4.27331 0.07427 3.83317 38 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 38 2.10526 2.31625 2.52039 0.35794 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 39 2.00852 3.16938 0.25799 2.97246 40 G = - > 1.38629 1.38629 1.38629 1.38629 0.03381 4.26525 3.95287 1.46634 0.26236 1.09861 0.40547 40 3.12631 0.69872 2.87593 0.90997 41 c = - > 1.38629 1.38629 1.38629 1.38629 0.02865 4.26009 4.26009 1.46634 0.26236 0.90154 0.52078 41 3.54249 2.25626 3.35834 0.18449 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 42 2.19651 2.87292 0.25743 2.82615 43 G = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 43 0.69062 2.65028 1.06871 2.46918 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 44 2.09369 2.09468 2.64368 0.38191 45 U + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 45 2.03169 3.39512 0.24002 3.02125 46 G + - , 1.38629 1.38629 1.38629 1.38629 1.26952 4.26525 0.34958 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 47 1.80323 1.30586 1.07721 1.49723 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 48 1.80100 1.30655 1.07804 1.49678 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 49 1.80003 1.30685 1.07840 1.49658 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 50 1.79967 1.30696 1.07853 1.49651 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 51 1.79961 1.30697 1.07855 1.49650 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 52 1.79970 1.30695 1.07852 1.49652 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 57 1.73092 1.21992 1.16186 1.53841 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 58 1.73080 1.21998 1.16191 1.53837 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 59 1.73074 1.22000 1.16193 1.53836 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 60 1.73083 1.21996 1.16190 1.53838 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 61 1.73116 1.21982 1.16177 1.53848 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 62 1.73194 1.21949 1.16149 1.53871 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03908 3.26161 64 2.97038 3.87904 0.11492 3.30751 65 G + - , 1.38629 1.38629 1.38629 1.38629 0.05070 3.34141 4.26525 0.66467 0.72245 1.09861 0.40547 65 2.31019 1.99446 2.77277 0.35356 67 U + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 66 1.71336 2.86667 0.36184 2.71114 68 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 67 1.36570 3.18814 0.42683 2.97641 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 68 1.34936 2.75949 0.50633 2.59604 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.04149 4.26525 3.62699 1.46634 0.26236 1.09861 0.40547 69 1.66067 2.40803 0.49374 2.21040 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.42016 4.25263 1.11221 1.46634 0.26236 1.35923 0.29687 70 1.84932 1.02007 1.56114 1.30126 72 c = - < 1.38629 1.38629 1.38629 1.38629 0.19310 3.87487 1.86533 1.46634 0.26236 0.65405 0.73384 71 1.83035 2.01054 2.17195 0.52464 73 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07607 3.10481 3.56066 0.98920 0.46501 0.26647 1.45278 72 1.47993 2.06850 1.54801 0.83632 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06126 4.21916 3.10751 1.46634 0.26236 0.46828 0.98371 73 1.17701 1.72847 1.86656 1.02279 77 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02949 4.23153 4.23153 1.46634 0.26236 0.52493 0.89550 74 1.30561 2.25608 0.91115 1.50431 78 g + - _ 1.38629 1.38629 1.38629 1.38629 0.19586 3.64128 1.88615 0.86229 0.54852 0.98652 0.46661 75 0.88323 2.05633 1.66578 1.31085 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.18873 4.11768 1.85978 1.46634 0.26236 2.54682 0.08157 76 1.45475 1.96999 1.39353 0.97052 81 u + - _ 1.38629 1.38629 1.38629 1.38629 0.22531 2.68306 2.01454 0.62542 0.76579 2.53545 0.08254 77 1.27081 1.90147 1.59842 1.00013 84 u + - _ 1.38629 1.38629 1.38629 1.38629 0.42308 3.86060 1.12726 1.46634 0.26236 0.23919 1.54770 78 1.53444 1.74220 0.87905 1.63933 85 g = - > 1.38629 1.38629 1.38629 1.38629 0.03838 3.97257 3.97257 1.46634 0.26236 0.11920 2.18598 79 2.52609 0.60990 2.14018 1.35096 86 C = - > 1.38629 1.38629 1.38629 1.38629 0.04530 3.50106 4.26009 0.76637 0.62492 0.90154 0.52078 80 2.84154 0.77394 2.56441 0.90756 88 c = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 81 3.18698 1.45497 2.97867 0.39388 89 U = - > 1.38629 1.38629 1.38629 1.38629 0.04183 3.61490 4.26525 0.84116 0.56424 1.09861 0.40547 82 2.95795 0.53534 2.67393 1.22546 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 83 2.84922 0.93209 2.58323 0.74897 92 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 84 3.44636 2.22410 3.27808 0.19568 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 85 3.00671 0.50308 2.72797 1.27108 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 86 3.34629 0.29223 3.07840 1.75938 95 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 87 2.95242 1.05683 2.69980 0.62921 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 88 3.70920 2.79885 3.40350 0.12628 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 89 2.94838 3.90353 0.10340 3.66367 98 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 90 0.11787 3.46606 3.14260 3.30293 99 A + - : 1.38629 1.38629 1.38629 1.38629 0.01435 4.25111 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Pro.cm0000644000543100007160000017242712573631650021154 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Pro-2nd-align STATES 289 NODES 76 CLEN 90 W 107 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:58 2015 COM [1] cmbuild --hand --enone Pro-final-vert.cm ../Pro-2nd-align.sto COM [2] cmcalibrate --seed 208 Pro-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1095 EFFN 1095.000000 CKSUM 1723993289 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4123 0.71863 ECMLC 0.70822 -5.90230 2.79756 1600000 568931 0.002109 ECMGC 0.31630 -38.52226 -22.84440 1600000 56979 0.007020 ECMLI 0.67159 -5.96868 3.12402 1600000 538552 0.002228 ECMGI 0.31542 -35.72069 -20.12705 1600000 54719 0.007310 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 0 107 149 -15.025 -16.270 -0.000 -12.724 IL 1 1 2 1 4 12 34 108 150 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 35 108 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 114 - A - + MR 3 2 3 5 5 18 39 107 149 -15.074 -0.001 -14.889 -11.461 -15.993 1.892 -5.938 -1.878 -10.639 D 4 2 3 5 5 9 30 105 147 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 12 34 107 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 113 C G = = MP 6 5 3 10 6 18 39 106 148 -16.007 -15.947 -0.001 -10.044 -15.003 -15.398 -13.053 -13.312 -12.376 -1.482 -4.514 -12.526 3.904 -11.644 -12.477 -0.998 -12.600 -11.677 -3.015 -12.895 -8.435 -11.280 ML 7 5 3 10 6 11 32 104 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 11 32 104 146 -7.522 -6.251 -2.160 -6.229 -0.518 -4.443 -0.072 -0.980 0.839 -0.410 D 9 5 3 10 6 7 27 100 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 11 33 105 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 11 34 105 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 112 A U = = MP 12 11 6 16 6 17 37 104 146 -16.006 -15.945 -0.001 -10.822 -15.002 -15.397 -12.048 -10.708 -4.133 3.847 -14.382 -15.538 -3.695 -12.286 -11.804 0.235 -12.473 -2.116 -9.766 -13.549 -11.671 -3.900 ML 13 11 6 16 6 11 32 101 144 -7.540 -7.886 -2.601 -0.331 -7.736 -5.266 1.475 -1.585 -1.294 -1.060 MR 14 11 6 16 6 10 32 102 144 -7.522 -6.251 -0.907 -6.229 -1.363 -4.443 -0.208 -0.509 -0.830 0.902 D 15 11 6 16 6 7 26 98 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 11 33 103 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 11 33 103 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 111 g c = = MP 18 17 6 22 6 15 36 102 144 -16.006 -15.945 -0.000 -14.721 -15.001 -15.396 -9.979 -2.598 -9.798 2.560 -10.929 -10.394 -3.372 -5.479 -10.235 2.655 -4.133 1.740 -3.780 -5.621 -8.003 -5.376 ML 19 17 6 22 6 11 32 100 142 -7.956 -8.302 -0.820 -1.310 -8.152 -5.682 0.400 -1.355 0.763 -0.755 MR 20 17 6 22 6 10 30 100 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 7 26 96 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 11 32 101 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 11 32 101 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 110 A U = = MP 24 23 6 28 6 13 34 100 142 -5.494 -15.946 -0.033 -14.723 -15.003 -15.398 -12.038 -1.000 -12.228 3.145 -14.338 -15.285 -3.137 -12.281 -11.795 2.393 -12.457 0.361 -9.717 -13.468 -11.616 -10.833 ML 25 23 6 28 6 10 30 97 140 -7.112 -7.458 -2.173 -0.466 -7.308 -4.838 1.242 -1.161 -0.902 -0.616 MR 26 23 6 28 6 10 30 98 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 7 26 94 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 8 26 93 135 -7.334 -7.597 -5.514 -9.252 -10.028 -0.053 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 11 32 99 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 109 a u = = MP 30 29 6 34 6 14 32 98 140 -15.975 -15.914 -0.000 -14.690 -14.970 -15.365 -4.643 -8.710 -9.898 2.888 -3.842 -10.521 -0.646 -10.571 -10.310 2.788 -5.348 -0.260 -6.377 -9.773 -8.121 -4.016 ML 31 29 6 34 6 10 30 96 138 -7.112 -7.458 -2.173 -0.466 -7.308 -4.838 1.242 -1.161 -0.902 -0.616 MR 32 29 6 34 6 10 29 96 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 7 25 91 133 -14.567 -13.265 -9.063 -9.745 -9.762 -0.006 IL 34 34 5 34 6 10 31 97 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 11 31 97 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 108 A U = = MP 36 35 6 40 6 12 30 96 138 -15.975 -15.914 -0.000 -14.690 -14.970 -15.365 -9.964 -8.603 -9.784 3.101 -10.916 -10.384 -1.808 -10.471 -10.218 2.118 -10.467 1.311 -3.581 -5.709 -3.043 -3.614 ML 37 35 6 40 6 10 29 95 137 -7.112 -7.458 -0.574 -1.867 -7.308 -4.838 1.242 -1.161 -0.902 -0.616 MR 38 35 6 40 6 9 28 94 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 7 25 91 133 -14.567 -13.265 -9.063 -9.745 -9.762 -0.006 IL 40 40 5 40 6 10 29 95 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 10 29 95 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 107 a u = = MP 42 41 6 46 4 10 28 94 136 -15.198 -15.405 -0.000 -13.819 -11.731 -1.702 -0.488 2.946 -13.600 -13.758 -8.870 -12.028 -11.590 2.522 -12.174 0.488 -3.669 -12.550 -10.789 -4.439 ML 43 41 6 46 4 9 27 93 135 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 8 27 93 135 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 7 25 91 133 -9.991 -9.673 -7.688 -0.010 IL 46 46 5 46 4 9 28 94 136 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 9 27 94 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 8 26 92 134 -16.108 -0.000 -14.762 -12.445 -3.851 -13.520 1.975 D 49 47 6 50 3 7 25 91 133 -12.095 -0.017 -6.486 IL 50 50 3 50 3 8 26 93 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 7 25 91 133 -16.796 -0.000 1.886 -5.538 -1.828 -10.572 D 52 50 3 53 2 6 24 90 132 -8.445 -0.004 IL 53 53 3 53 2 7 25 91 133 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 6 24 90 132 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 57 87 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 57 87 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 39 69 -0.000 -14.135 -13.543 -14.183 [ MATP 15 ] 11 33 G U = = MP 58 57 1 62 6 2 3 39 69 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -12.050 -1.337 -12.245 -0.021 -14.386 -15.541 -9.844 -12.288 -11.805 0.615 -12.475 3.643 -9.769 -13.551 -11.675 -0.769 ML 59 57 1 62 6 1 1 37 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 37 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 34 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 38 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 38 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 32 U A = = MP 64 63 6 68 6 2 3 37 67 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.053 -13.307 -12.377 -9.546 -10.734 -12.527 -6.446 -11.645 -2.814 -9.527 -12.600 -11.664 3.971 -12.896 -2.636 -11.280 ML 65 63 6 68 6 1 1 35 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 35 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 32 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 36 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 36 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 31 U A = = MP 70 69 6 74 6 2 3 35 65 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -4.100 -13.289 -12.360 -9.509 -10.718 -12.514 -0.101 -11.630 -5.536 -0.998 -12.586 -11.647 3.750 -12.872 -0.074 -3.631 ML 71 69 6 74 6 1 1 33 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 33 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 31 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 34 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 34 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 30 U G = = MP 76 75 6 80 4 2 3 33 63 -15.231 -15.438 -0.000 -13.852 -7.189 -13.276 -1.622 -0.998 -10.714 -5.277 -2.199 -4.307 -12.452 -9.448 -2.814 -11.625 2.036 -3.934 3.210 0.384 ML 77 75 6 80 4 1 1 32 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 31 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 30 60 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 33 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 33 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 31 61 -16.140 -0.017 -6.403 1.878 -5.755 -2.543 -2.896 D 83 81 6 84 3 0 0 29 59 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 32 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 30 60 -16.123 -0.473 -1.840 1.469 -2.840 -0.611 -1.191 D 86 84 3 87 3 0 0 28 58 -11.197 -6.710 -0.014 IL 87 87 3 87 3 1 1 31 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 29 59 -15.651 -1.535 -0.611 -1.523 -0.754 -4.583 1.593 D 89 87 3 90 3 0 0 28 58 -15.764 -11.277 -0.001 IL 90 90 3 90 3 1 1 30 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 27 58 -3.516 -6.177 -0.154 -0.097 -2.123 -7.615 1.501 D 92 90 3 93 3 0 0 28 58 -17.153 -0.026 -5.813 IL 93 93 3 93 3 1 1 30 60 -1.310 -0.750 -8.800 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - + - ML 94 93 3 96 3 1 2 28 58 -15.756 -0.000 -14.410 -0.102 -3.693 -0.092 1.037 D 95 93 3 96 3 0 0 23 53 -15.467 -4.800 -0.053 IL 96 96 3 96 3 1 1 29 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - U - + - ML 97 96 3 99 3 1 1 27 57 -15.771 -1.869 -0.462 -0.071 -1.911 -0.948 1.179 D 98 96 3 99 3 0 0 21 52 -15.415 -10.928 -0.001 IL 99 99 3 99 3 1 1 30 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - + - ML 100 99 3 102 3 1 1 28 58 -0.808 -1.222 -12.556 -1.482 -0.928 -7.395 1.637 D 101 99 3 102 3 0 0 21 51 -5.737 -0.028 -11.608 IL 102 102 3 102 3 1 1 28 58 -0.883 -1.129 -11.791 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.973 -11.493 -5.745 -4.209 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.140 -0.000 -14.794 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - u - + - ML 109 108 2 111 5 1 1 26 45 -6.606 -0.015 -14.889 -15.101 -15.993 -0.179 -0.412 -0.197 0.578 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.453 -0.052 -7.132 -8.964 -8.238 0.000 0.000 0.000 0.000 [ MATP 30 ] 36 53 C G = = MP 112 111 3 116 6 2 2 25 44 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -10.830 -10.568 -10.765 -2.885 -4.285 -11.508 3.117 -10.252 -10.650 -0.970 -11.119 -8.168 2.409 -10.983 0.162 -2.404 ML 113 111 3 116 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 37 52 c g = = MP 118 117 6 122 6 2 2 23 42 -16.008 -15.947 -0.000 -14.724 -15.003 -15.398 -13.060 -13.341 -12.377 -9.578 -10.728 -3.580 2.862 -1.487 -12.481 -9.550 -12.601 -11.745 2.853 -12.894 -0.017 -3.805 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 38 51 A U = = MP 124 123 6 128 6 2 2 21 40 -16.008 -6.412 -0.018 -11.012 -15.003 -15.398 -10.065 -3.302 -9.890 3.272 -11.032 -10.505 -0.927 -10.568 -5.877 2.122 -10.567 -0.146 -1.464 -9.759 -8.107 -3.931 ML 125 123 6 128 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 21 39 -5.633 -0.046 -9.144 -7.312 -8.417 0.000 0.000 0.000 0.000 [ MATP 33 ] 39 49 G C = = MP 130 129 6 134 6 2 2 19 38 -16.007 -15.946 -0.000 -14.723 -15.003 -15.398 -12.376 -4.803 -12.679 -1.876 -14.629 -13.332 -9.850 -12.705 -11.839 3.157 -12.369 2.759 -9.882 -13.032 -11.826 -11.287 ML 131 129 6 134 6 1 1 23 42 -7.024 -7.371 -0.619 -1.779 -7.220 -4.750 -0.216 -1.157 1.012 -0.570 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 40 48 C G = = MP 136 135 6 140 4 2 2 17 35 -15.231 -15.438 -0.000 -13.852 -13.060 -13.342 -12.377 -9.578 -2.481 -12.521 3.535 -1.487 -12.481 -9.550 -12.601 -11.746 0.853 -4.286 1.006 -11.283 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.140 -0.000 -14.794 -12.107 -1.810 -13.083 1.893 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.140 -0.000 -14.794 -12.695 -4.762 -13.847 1.987 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.140 -0.000 -14.794 -13.426 -12.045 -15.004 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.140 -0.000 -14.794 -10.665 -12.422 2.000 -11.412 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - G - * - ML 154 153 3 156 3 1 1 9 28 -16.140 -0.000 -14.794 -10.665 -12.422 2.000 -11.412 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.140 -0.000 -14.794 -3.351 -3.008 1.917 -11.051 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - a - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.650 -4.666 0.362 0.145 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 1 56 99 -16.140 -0.000 -14.794 IL 165 165 2 165 3 1 1 58 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 54 - u - + - ML 166 165 2 168 3 1 1 56 99 -16.140 -0.013 -6.820 -0.073 -1.816 0.345 0.580 D 167 165 2 168 3 0 0 55 97 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 57 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 55 - G - + - ML 169 168 3 171 2 1 1 55 98 -16.783 -0.000 -1.096 -2.972 1.748 -4.417 D 170 168 3 171 2 0 0 54 97 -9.722 -0.002 IL 171 171 3 171 2 1 1 56 98 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 54 97 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.831 -14.135 -13.543 -0.007 [ MATP 48 ] 56 73 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 57 72 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 58 71 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 59 70 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 60 69 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 61 68 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.022 -18.720 -14.517 -15.199 -15.217 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 62 67 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.444 -15.125 -4.028 -0.091 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 63 - A - + - ML 216 215 6 218 3 1 1 13 32 -12.147 -0.001 -10.801 1.323 -6.935 0.567 -6.837 D 217 215 6 218 3 0 0 8 26 -17.466 -12.979 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 64 - U - + - ML 219 218 3 221 3 1 1 12 30 -12.147 -0.001 -10.801 -8.489 -7.589 -9.574 1.997 D 220 218 3 221 3 0 0 7 25 -17.466 -12.979 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 65 - G - + - ML 222 221 3 224 3 1 1 10 29 -12.147 -0.001 -10.801 -6.760 -8.529 1.994 -7.522 D 223 221 3 224 3 0 0 5 24 -17.466 -12.979 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 66 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -6.760 -8.529 1.994 -7.522 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 49 91 -16.140 -0.046 -5.001 IL 230 230 2 230 3 1 1 50 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 74 - G - + - ML 231 230 2 233 3 1 1 49 91 -3.639 -0.127 -8.080 0.092 -10.422 1.532 -4.608 D 232 230 2 233 3 0 0 38 80 -12.574 -8.087 -0.006 IL 233 233 3 233 3 1 1 49 91 -7.176 -0.012 -9.876 0.000 0.000 0.000 0.000 [ MATL 62 ] 76 - U - + - ML 234 233 3 236 5 1 1 48 90 -15.023 -0.000 -14.838 -15.050 -15.942 -1.624 -1.090 -3.881 1.650 D 235 233 3 236 5 0 0 37 79 -10.695 -6.539 -9.956 -8.331 -0.022 IL 236 236 3 236 5 1 1 48 90 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 77 106 G C = = MP 237 236 3 241 6 2 2 47 89 -15.957 -3.973 -0.096 -10.511 -14.953 -15.348 -6.319 -3.772 -1.790 1.346 -4.759 -10.350 -5.951 -4.338 -10.190 3.048 -10.437 1.968 -3.736 -9.608 -0.475 -8.718 ML 238 236 3 241 6 1 1 45 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 44 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 32 74 -15.197 -13.895 -9.692 -10.374 -10.392 -0.004 IL 241 241 5 241 6 1 1 46 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 46 88 -2.702 -0.244 -11.637 -9.805 -10.911 0.000 0.000 0.000 0.000 [ MATP 64 ] 78 103 g c = = MP 243 242 6 247 6 2 2 45 87 -15.956 -15.895 -0.002 -9.335 -14.952 -15.347 -9.925 -3.406 -9.743 2.033 -10.874 -10.339 -1.442 -5.944 -0.481 2.442 -10.428 2.340 -2.872 -5.588 -4.969 -5.495 ML 244 242 6 247 6 1 1 43 85 -7.244 -7.590 -2.305 -0.419 -7.440 -4.970 -0.418 -1.409 1.203 -0.806 MR 245 242 6 247 6 1 1 42 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 31 73 -15.197 -13.895 -9.692 -10.374 -10.392 -0.004 IL 247 247 5 247 6 1 1 44 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 44 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 79 102 G C = = MP 249 248 6 253 6 2 2 43 85 -6.408 -5.207 -0.104 -11.290 -14.949 -5.049 -9.925 -4.039 -9.743 2.158 -10.874 -4.623 -3.437 -10.433 -10.181 3.081 -10.427 0.887 -0.453 -9.597 -7.948 -1.781 ML 250 248 6 253 6 1 1 42 84 -8.356 -8.703 -0.662 -3.111 -8.552 -2.035 0.716 -1.519 0.571 -0.936 MR 251 248 6 253 6 1 1 40 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 30 72 -15.197 -13.895 -9.692 -10.374 -10.392 -0.004 IL 253 253 5 253 6 1 1 42 84 -6.416 -6.679 -0.042 -8.334 -9.110 -8.770 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 42 85 -1.439 -0.825 -10.858 -3.936 -10.131 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 99 g c = = MP 255 254 6 259 6 2 2 40 83 -15.907 -15.846 -0.256 -4.449 -3.816 -4.445 -9.911 -1.207 -9.732 2.384 -10.867 -10.335 -2.980 -10.418 -3.460 2.989 -1.487 -0.250 -6.199 -9.592 -0.092 -4.850 ML 256 254 6 259 6 1 1 44 86 -6.884 -7.231 -0.700 -1.639 -7.080 -4.610 1.093 -0.967 -0.713 -0.423 MR 257 254 6 259 6 1 1 34 77 -9.242 -7.971 -3.880 -7.949 -3.083 -0.314 -2.330 -3.651 1.848 -3.034 D 258 254 6 259 6 0 0 28 70 -16.082 -14.780 -10.577 -11.259 -11.277 -0.002 IL 259 259 5 259 6 1 1 40 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 38 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 98 G C = = MP 261 260 6 265 4 2 2 35 77 -7.222 -15.080 -0.041 -5.547 -9.627 -8.267 -3.891 -1.058 -10.566 -10.042 0.909 -10.132 -9.882 3.558 -2.046 0.074 -1.607 -9.300 -2.634 -8.410 ML 262 260 6 265 4 1 1 45 88 -0.089 -9.627 -4.166 -8.356 -1.875 1.823 -2.668 -4.920 MR 263 260 6 265 4 1 1 27 69 -11.541 -10.570 -1.816 -0.484 0.499 -5.751 1.301 -3.254 D 264 260 6 265 4 0 0 25 67 -12.273 -11.954 -0.315 -2.353 IL 265 265 5 265 4 1 1 44 87 -0.627 -9.868 -1.552 -6.626 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 87 - U - + - ML 267 266 6 269 3 1 1 22 45 -5.382 -0.048 -6.818 -4.246 -4.790 -1.349 1.815 D 268 266 6 269 3 0 0 14 37 -14.041 -0.655 -1.455 IL 269 269 3 269 3 1 1 26 49 -1.175 -0.849 -8.923 0.000 0.000 0.000 0.000 [ MATL 69 ] 90 - U - + - ML 270 269 3 272 3 1 1 12 31 -16.082 -0.014 -6.702 -3.089 -5.835 -0.164 1.572 D 271 269 3 272 3 0 0 13 31 -12.916 -0.745 -1.310 IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 91 - a - + - ML 273 272 3 275 3 1 1 11 29 -16.104 -0.006 -7.960 0.916 -2.469 -1.478 0.654 D 274 272 3 275 3 0 0 12 30 -12.263 -0.857 -1.159 IL 275 275 3 275 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 92 - A - + - ML 276 275 3 278 3 1 1 10 28 -6.311 -0.259 -2.720 1.220 -5.524 0.320 -1.322 D 277 275 3 278 3 0 0 8 27 -11.538 -1.703 -0.530 IL 278 278 3 278 3 1 1 10 28 -4.663 -0.067 -7.363 0.000 0.000 0.000 0.000 [ MATL 72 ] 94 - A - + - ML 279 278 3 281 3 1 1 9 27 -15.889 -0.061 -4.606 1.854 -9.777 -2.220 -2.554 D 280 278 3 281 3 0 0 8 27 -14.918 -6.987 -0.011 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 95 - g - + - ML 282 281 3 284 3 1 1 6 11 -5.515 -0.177 -3.420 0.568 -3.059 0.764 -0.515 D 283 281 3 284 3 0 0 3 8 -15.190 -3.264 -0.159 IL 284 284 3 284 3 1 1 6 11 -5.125 -0.049 -7.825 0.000 0.000 0.000 0.000 [ MATL 74 ] 97 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.764 -2.499 -2.842 1.822 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Pro-2nd-align LENG 90 MAXL 162 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:58 2015 COM [1] cmbuild --hand --enone Pro-final-vert.cm ../Pro-2nd-align.sto NSEQ 1095 EFFN 12.243061 CKSUM 1723993289 STATS LOCAL MSV -9.0990 0.71863 STATS LOCAL VITERBI -9.7048 0.71863 STATS LOCAL FORWARD -3.5031 0.71863 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42550 1.76756 1.26244 1.18449 1.38629 1.38629 1.38629 1.38629 0.01423 4.97222 4.93299 1.46634 0.26236 0.00000 * 1 3.34665 0.15693 3.07346 2.75237 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01396 4.97194 4.97194 1.46634 0.26236 1.11186 0.39891 2 0.16528 4.32026 2.09886 4.10722 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01396 4.97194 4.97194 1.46634 0.26236 1.07263 0.41871 3 1.20671 2.89842 0.54122 2.75395 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 4 0.78791 3.18206 0.77723 3.12287 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 5 1.07662 2.56389 0.66065 2.72216 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03332 4.97222 3.65578 1.46634 0.26236 1.09861 0.40547 6 0.96480 2.77887 0.72235 2.64196 7 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01422 4.95313 4.95313 1.46634 0.26236 1.74574 0.19179 7 0.94313 2.97330 0.70234 2.74831 8 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01422 4.95313 4.95313 1.46634 0.26236 1.74574 0.19179 8 4.00404 3.34991 4.52078 0.06636 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.01422 4.95313 4.95313 1.46634 0.26236 0.42929 1.05259 9 0.12469 3.89097 2.55589 3.95366 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 10 2.09781 4.46439 0.19834 3.08621 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 11 6.25583 5.55893 6.22453 0.00778 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 12 2.89630 1.79389 2.41369 0.37255 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 13 1.90609 1.86279 2.01050 0.57593 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 14 0.14713 3.53662 2.86197 2.98486 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02415 4.97222 4.07862 1.46634 0.26236 1.09861 0.40547 15 0.50059 2.54599 1.81705 1.87779 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.28857 4.96217 1.41194 1.46634 0.26236 1.49154 0.25493 16 2.11828 1.85535 3.01489 0.39406 17 U + - _ 1.38629 1.38629 1.38629 1.38629 0.78157 4.69210 0.62896 1.46634 0.26236 3.64454 0.02648 17 1.44256 1.92949 2.35456 0.64718 18 U + - _ 1.38629 1.38629 1.38629 1.38629 0.94342 2.65968 0.61483 0.77588 0.61674 0.03860 3.27365 18 1.34453 2.33590 1.54555 0.84532 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01744 4.75062 4.75062 1.46634 0.26236 2.75434 0.06577 19 1.34700 2.09495 1.89534 0.76220 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.89689 4.75937 0.53855 1.46634 0.26236 3.42342 0.03314 20 1.75792 1.75185 2.43496 0.56820 23 U + - _ 1.38629 1.38629 1.38629 1.38629 0.42025 1.13025 3.90366 0.86926 0.54345 0.02067 3.88940 21 0.04512 4.54995 4.17646 4.00666 29 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 22 1.38343 2.18462 0.82231 1.62280 30 g = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 23 0.46730 2.56032 1.48965 2.65105 31 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 24 0.01123 6.46064 5.08574 5.67826 32 A = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 25 4.37434 1.91687 4.22390 0.19153 33 U = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 26 1.36883 1.65302 1.58465 1.05238 34 u + - , 1.38629 1.38629 1.38629 1.38629 0.02281 4.15898 4.97222 0.73143 0.65628 1.09861 0.40547 27 2.72183 0.77689 2.31199 0.97990 36 c = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 28 2.88629 0.84573 2.64445 0.81209 37 u = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 29 0.85621 2.66413 0.84236 2.59194 38 g = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 30 2.81869 4.31032 0.09426 4.08385 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 31 3.04322 0.47662 2.79377 1.30842 40 C = - < 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 32 3.76103 2.53265 4.27167 0.12405 41 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 33 4.17701 3.64813 4.70218 0.05178 42 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 34 4.64948 4.36149 5.21406 0.02816 43 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 35 4.54859 5.64531 0.02069 5.05730 44 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 36 4.54859 5.64531 0.02069 5.05730 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 37 3.01855 3.36153 0.11146 3.82022 46 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 38 1.01567 2.56373 1.26902 1.27397 47 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 39 1.77565 2.93240 0.35345 2.58895 48 G = - > 1.38629 1.38629 1.38629 1.38629 0.01434 4.97222 4.91859 1.46634 0.26236 1.09861 0.40547 40 4.27643 0.55192 4.11039 0.93175 49 C = - > 1.38629 1.38629 1.38629 1.38629 0.02416 4.07795 4.97184 0.68218 0.70424 1.06318 0.42366 41 2.83317 0.97871 2.51618 0.72441 51 u = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 42 0.97437 2.77171 0.74850 2.44251 52 g = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 43 1.19670 2.45975 0.64840 2.41387 53 G = - > 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 44 1.33225 2.12782 1.30711 1.06010 54 u + - , 1.38629 1.38629 1.38629 1.38629 0.02157 4.97222 4.23962 1.46634 0.26236 1.09861 0.40547 45 1.99859 3.00258 0.26550 3.03676 55 G + - , 1.38629 1.38629 1.38629 1.38629 1.96897 4.96471 0.15850 1.46634 0.26236 1.40622 0.28113 46 1.80805 1.30439 1.07542 1.49819 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 47 1.80284 1.30598 1.07735 1.49715 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 48 1.80038 1.30674 1.07827 1.49666 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 49 1.79926 1.30708 1.07868 1.49643 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 50 1.79880 1.30722 1.07886 1.49634 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 51 1.79867 1.30726 1.07891 1.49631 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 52 1.79869 1.30726 1.07890 1.49631 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.69240 0.07012 53 0.86420 2.05825 1.34973 1.65223 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07023 3.38399 3.38399 1.46634 0.26236 4.76949 0.00852 54 1.78420 1.90990 2.24388 0.54831 64 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07023 3.38399 3.38399 1.46634 0.26236 4.76949 0.00852 55 1.71920 2.41623 0.51801 1.99636 65 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07023 3.38399 3.38399 1.46634 0.26236 4.76949 0.00852 56 1.71920 2.41623 0.51801 1.99636 66 G + - _ 1.38629 1.38629 1.38629 1.38629 0.38826 3.38399 1.24531 1.46634 0.26236 4.76949 0.00852 57 1.72997 1.22033 1.16221 1.53813 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 58 1.72992 1.22035 1.16223 1.53811 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 59 1.72995 1.22034 1.16222 1.53812 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 60 1.73014 1.22026 1.16215 1.53818 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 61 1.73062 1.22005 1.16197 1.53832 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 62 1.73161 1.21963 1.16161 1.53861 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.83109 0.00801 63 1.73350 1.21882 1.16092 1.53917 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04757 3.06926 64 1.37004 3.73930 0.38076 3.24961 74 G + - , 1.38629 1.38629 1.38629 1.38629 0.08899 2.59113 4.58461 0.18018 1.80255 1.92031 0.15848 65 2.26785 2.06241 3.15736 0.31913 76 U + - , 1.38629 1.38629 1.38629 1.38629 0.01438 4.94228 4.94228 1.46634 0.26236 1.98203 0.14826 66 1.62349 2.84448 0.42243 2.41718 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.01438 4.94228 4.94228 1.46634 0.26236 1.98203 0.14826 67 1.43753 2.68577 0.47466 2.62804 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.01438 4.94228 4.94228 1.46634 0.26236 1.98203 0.14826 68 1.39398 2.85813 0.51032 2.36200 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.05419 4.06862 3.33419 0.69423 0.69207 1.98203 0.14826 69 1.26614 2.75472 0.59077 2.29703 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.12031 4.91336 2.24428 1.46634 0.26236 2.42044 0.09308 70 2.00736 2.08610 0.43089 2.39080 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.08098 2.93674 3.69890 1.11439 0.39767 0.55105 0.85884 71 3.03538 3.09140 2.47372 0.19573 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04327 3.59345 4.20989 0.81809 0.58209 0.57117 0.83210 72 2.57360 2.98898 1.73560 0.36082 90 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02267 4.93799 4.18358 1.46634 0.26236 0.69774 0.68858 73 0.88651 2.27004 2.06595 1.02750 91 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01768 4.95070 4.56169 1.46634 0.26236 0.80783 0.59027 74 0.64507 2.92332 1.26533 1.96987 92 A + - _ 1.38629 1.38629 1.38629 1.38629 0.16635 4.03546 1.99824 0.66463 0.72250 1.12905 0.39059 75 0.17045 3.52547 2.68530 2.82898 94 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05118 4.82632 3.17296 1.46634 0.26236 2.98616 0.05180 76 1.08028 2.40005 1.03390 1.54099 95 g + - _ 1.38629 1.38629 1.38629 1.38629 0.11765 3.64205 2.46751 0.54482 0.86737 2.04385 0.13872 77 2.66317 2.59855 3.01049 0.21490 97 U + - _ 1.38629 1.38629 1.38629 1.38629 0.06728 4.73524 2.87735 1.46634 0.26236 0.61503 0.77788 78 2.56082 0.55223 1.87678 1.63985 98 C = - > 1.38629 1.38629 1.38629 1.38629 0.01640 4.83285 4.79091 1.46634 0.26236 0.60736 0.78699 79 2.84958 0.69661 2.15020 1.11658 99 c = - > 1.38629 1.38629 1.38629 1.38629 0.04032 3.47820 4.75016 0.70810 0.67841 0.86295 0.54804 80 2.65083 0.66151 2.69337 1.06223 102 C = - > 1.38629 1.38629 1.38629 1.38629 0.01441 4.94045 4.94045 1.46634 0.26236 1.85168 0.17076 81 2.55550 0.87962 2.51371 0.85228 103 u = - > 1.38629 1.38629 1.38629 1.38629 0.07079 2.79362 4.94173 0.34517 1.23134 1.91848 0.15880 82 2.93092 0.68228 2.31196 1.07259 106 C = - > 1.38629 1.38629 1.38629 1.38629 0.03435 4.94228 3.62584 1.46634 0.26236 0.32238 1.28889 83 3.02751 0.84156 2.45873 0.83244 107 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01468 4.95313 4.89164 1.46634 0.26236 1.74574 0.19179 84 3.00259 0.97425 2.56148 0.70183 108 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01423 4.95268 4.95268 1.46634 0.26236 1.75675 0.18947 85 2.95269 0.77478 2.44012 0.91667 109 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01423 4.95268 4.95268 1.46634 0.26236 0.44030 1.03239 86 3.38595 0.90733 3.00619 0.66734 110 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01475 4.97178 4.86554 1.46634 0.26236 1.11953 0.39517 87 3.03999 0.79916 2.70049 0.83176 111 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01397 4.97100 4.97100 1.46634 0.26236 1.09398 0.40779 88 4.52811 2.35501 4.00168 0.13236 112 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01396 4.97144 4.97144 1.46634 0.26236 1.02905 0.44215 89 2.96393 3.15175 0.14432 3.21894 113 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01395 4.97222 4.97222 1.46634 0.26236 1.09861 0.40547 90 0.11813 3.97990 2.59605 4.00824 114 A + - : 1.38629 1.38629 1.38629 1.38629 0.00700 4.96527 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf.cm0000644000543100007160000017274112710016425016457 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME all-042516 STATES 289 NODES 76 CLEN 90 W 664 ALPH RNA RF yes CONS yes MAP yes DATE Tue Apr 26 00:36:52 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/all-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/all-042516.sto COM [2] cmcalibrate --hfile all.hfile --sfile all.sfile --qqfile all.qqfile --ffile all.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/all-042516.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 109245 EFFN 109245.000000 CKSUM 4144942527 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.8039 0.71856 ECMLC 0.63908 -7.63251 1.71282 1600000 470946 0.002548 ECMGC 0.37115 -21.63203 -10.67957 1600000 23305 0.017164 ECMLI 0.59990 -6.98764 2.72098 1600000 406052 0.002955 ECMGI 0.37354 -18.44487 -7.64909 1600000 22563 0.017728 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 664 1411 -21.663 -22.908 -0.041 -5.152 IL 1 1 2 1 4 16 43 667 1414 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 45 667 1414 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 432 - A - + MR 3 2 3 5 5 20 46 666 1413 -1.478 -0.701 -14.356 -5.277 -18.072 1.654 -3.110 -0.852 -2.452 D 4 2 3 5 5 14 39 663 1411 -17.140 -0.077 -8.406 -6.726 -4.650 IR 5 5 3 5 5 19 46 667 1414 -0.608 -1.579 -7.906 -7.696 -11.655 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 428 G C = = MP 6 5 3 10 6 21 45 664 1411 -7.570 -4.200 -0.096 -12.922 -7.709 -14.509 -5.886 -5.852 -6.542 -1.693 -3.316 -4.741 -0.409 -5.103 -7.107 3.765 -7.191 -2.169 -0.635 -6.375 -2.102 -9.925 ML 7 5 3 10 6 17 42 664 1411 -15.674 -2.867 -7.732 -0.221 -15.870 -13.399 -4.371 1.815 -2.168 -2.244 MR 8 5 3 10 6 16 40 661 1408 -19.001 -4.070 -5.216 -17.708 -0.136 -8.191 -6.945 1.974 -10.754 -3.993 D 9 5 3 10 6 11 34 657 1405 -17.223 -2.326 -11.719 -12.401 -10.039 -0.323 IL 10 10 5 10 6 19 44 664 1411 -11.785 -1.280 -0.780 -13.703 -7.589 -14.139 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 43 665 1412 -0.469 -1.942 -8.675 -6.240 -9.255 0.000 0.000 0.000 0.000 [ MATP 3 ] 4 422 g c = = MP 12 11 6 16 6 20 43 662 1409 -7.353 -5.605 -0.048 -12.305 -7.408 -14.525 -8.638 -7.699 -7.502 -1.719 -2.320 -1.869 2.540 -8.207 -7.992 2.967 -7.465 -1.222 -0.083 -6.561 -2.489 -9.141 ML 13 11 6 16 6 16 41 662 1410 -15.678 -3.117 -5.889 -0.217 -15.874 -7.069 1.892 -2.259 -4.061 -5.746 MR 14 11 6 16 6 16 39 659 1407 -19.207 -3.836 -3.655 -17.914 -0.234 -10.988 -1.560 1.693 -1.389 -4.470 D 15 11 6 16 6 11 33 655 1402 -17.404 -2.277 -9.099 -12.582 -6.687 -0.355 IL 16 16 5 16 6 18 42 663 1410 -1.621 -0.943 -3.261 -14.480 -4.312 -14.916 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 42 662 1410 -0.598 -1.789 -6.938 -4.622 -9.691 0.000 0.000 0.000 0.000 [ MATP 4 ] 7 417 c g = = MP 18 17 6 22 6 19 41 659 1407 -7.470 -7.089 -0.024 -9.769 -8.772 -17.164 -5.042 -5.374 -4.390 1.437 -3.578 -7.887 2.406 -3.816 -3.374 2.354 -5.370 -1.193 0.843 -4.237 -2.380 -5.607 ML 19 17 6 22 6 16 40 661 1409 -15.756 -0.347 -7.029 -2.331 -15.952 -7.108 1.673 -3.167 -0.527 -7.585 MR 20 17 6 22 6 15 38 658 1405 -19.370 -3.036 -4.066 -18.077 -0.289 -13.835 0.966 -0.656 0.295 -2.440 D 21 17 6 22 6 10 33 653 1400 -17.248 -3.906 -4.510 -12.425 -12.442 -0.170 IL 22 22 5 22 6 18 41 659 1407 -1.183 -12.972 -0.838 -14.627 -15.403 -15.064 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 40 661 1408 -0.482 -2.165 -17.830 -4.031 -17.103 0.000 0.000 0.000 0.000 [ MATP 5 ] 10 411 g c = = MP 24 23 6 28 6 17 39 657 1405 -5.567 -8.115 -0.043 -14.350 -7.717 -15.582 -5.175 -3.417 -7.201 0.393 -5.601 -6.067 2.403 -7.051 -7.999 2.732 -6.626 -0.985 0.362 -1.940 -0.973 -6.865 ML 25 23 6 28 6 14 38 659 1406 -4.731 -0.281 -4.412 -3.806 -14.755 -5.601 -2.739 -3.533 -1.564 1.776 MR 26 23 6 28 6 14 36 656 1404 -9.235 -2.399 -4.367 -18.018 -0.398 -9.696 -1.396 1.389 -0.739 -1.313 D 27 23 6 28 6 10 33 652 1399 -17.124 -15.822 -6.161 -8.741 -4.055 -0.115 IL 28 28 5 28 6 16 39 658 1405 -0.960 -3.410 -1.374 -8.096 -9.162 -10.244 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 38 658 1406 -0.584 -1.932 -17.662 -4.075 -6.453 0.000 0.000 0.000 0.000 [ MATP 6 ] 15 406 c g = = MP 30 29 6 34 6 15 37 655 1403 -22.582 -6.255 -0.032 -11.891 -6.825 -21.973 -5.287 -4.038 -2.858 1.404 -6.308 -7.224 2.542 -6.697 -5.453 2.200 -2.789 -0.521 0.424 -7.626 -1.395 -3.443 ML 31 29 6 34 6 14 36 654 1402 -12.028 -12.374 -1.902 -0.453 -12.224 -9.753 -0.531 0.856 -2.055 0.330 MR 32 29 6 34 6 13 35 655 1402 -19.255 -1.927 -2.717 -17.962 -0.775 -10.806 -2.979 1.489 -0.382 -1.742 D 33 29 6 34 6 10 33 652 1399 -17.650 -16.348 -5.043 -5.616 -7.301 -0.085 IL 34 34 5 34 6 14 36 655 1402 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 37 657 1404 -0.440 -2.181 -18.453 -4.566 -17.726 0.000 0.000 0.000 0.000 [ MATP 7 ] 16 399 c g = = MP 36 35 6 40 6 13 35 653 1401 -5.752 -10.332 -0.029 -10.567 -14.857 -17.275 -4.067 -5.282 -2.321 1.199 -6.373 -6.580 2.302 -5.894 -8.031 2.227 -4.364 -0.444 0.973 -3.216 -0.792 -1.593 ML 37 35 6 40 6 12 34 653 1401 -12.686 -1.295 -2.467 -1.285 -12.881 -10.411 -0.748 -2.601 1.541 -1.598 MR 38 35 6 40 6 11 33 652 1400 -19.133 -2.310 -5.232 -13.857 -0.931 -2.015 0.379 -0.508 0.458 -0.685 D 39 35 6 40 6 10 33 652 1399 -17.582 -1.736 -5.294 -5.617 -12.776 -0.613 IL 40 40 5 40 6 13 35 654 1401 -1.810 -1.651 -1.472 -10.121 -16.781 -4.836 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 35 654 1401 -0.642 -1.801 -7.743 -3.888 -16.827 0.000 0.000 0.000 0.000 [ MATP 8 ] 20 394 G C = = MP 42 41 6 46 4 11 33 651 1399 -6.061 -5.328 -0.063 -8.362 -8.552 -1.148 -7.450 1.868 -7.184 -7.651 -0.544 -4.233 -5.952 3.142 -6.225 -0.740 0.681 -8.044 -5.543 -4.115 ML 43 41 6 46 4 11 33 651 1398 -10.819 -0.571 -1.621 -9.730 -2.573 -0.628 0.945 0.333 MR 44 41 6 46 4 10 32 650 1398 -4.340 -2.085 -1.589 -1.387 -0.335 0.914 -0.319 -0.938 D 45 41 6 46 4 10 32 651 1398 -3.551 -0.313 -4.824 -3.743 IL 46 46 5 46 4 11 34 654 1401 -0.388 -4.554 -2.372 -18.059 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 10 32 650 1398 -1.918 -0.477 -5.880 0.000 0.000 0.000 0.000 [ MATL 9 ] 27 - U - + - ML 48 47 6 50 3 9 31 649 1397 -5.454 -0.035 -9.973 -2.710 -4.500 -4.000 1.903 D 49 47 6 50 3 8 30 648 1395 -17.872 -0.089 -4.058 IL 50 50 3 50 3 10 32 650 1397 -1.090 -0.961 -5.915 0.000 0.000 0.000 0.000 [ MATL 10 ] 32 - A - + - ML 51 50 3 53 2 8 30 648 1395 -5.148 -0.041 1.158 -2.937 0.597 -2.995 D 52 50 3 53 2 7 29 647 1395 -1.825 -0.478 IL 53 53 3 53 2 8 30 648 1396 -3.735 -0.113 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 7 29 647 1394 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 8 618 1365 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 8 618 1365 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 72 154 -0.037 -6.517 -6.587 -7.940 [ MATP 15 ] 35 98 G C = = MP 58 57 1 62 6 2 2 72 155 -7.452 -8.447 -0.024 -11.398 -7.155 -10.997 -5.411 -5.357 -5.524 -1.704 -4.429 -5.066 -0.191 -7.337 -4.775 3.585 -6.374 1.177 -1.838 -6.033 -4.950 -5.022 ML 59 57 1 62 6 1 1 67 149 -16.997 -17.344 -1.541 -0.661 -17.193 -5.387 -3.496 -3.480 1.266 0.502 MR 60 57 1 62 6 1 1 66 148 -17.463 -16.192 -5.371 -16.170 -0.096 -4.645 -3.982 1.140 -0.550 0.071 D 61 57 1 62 6 0 0 61 144 -18.724 -17.422 -13.219 -13.901 -3.400 -0.144 IL 62 62 5 62 6 1 2 72 154 -1.459 -12.834 -0.653 -14.489 -15.265 -14.926 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 71 154 -10.037 -0.002 -13.548 -11.716 -12.822 0.000 0.000 0.000 0.000 [ MATP 16 ] 38 96 C G = = MP 64 63 6 68 6 2 2 70 153 -5.650 -9.872 -0.036 -9.384 -9.463 -10.000 -5.669 -5.985 -8.102 -1.459 -5.424 -5.798 3.505 -5.796 -7.782 -0.673 -3.932 -5.483 1.637 -4.543 -2.051 -3.892 ML 65 63 6 68 6 1 1 56 138 -16.411 -16.757 -5.709 -0.094 -16.607 -4.507 -2.859 -2.489 -7.168 1.879 MR 66 63 6 68 6 1 1 64 147 -18.168 -4.508 -4.333 -16.875 -0.250 -3.937 0.637 -1.297 0.429 -0.532 D 67 63 6 68 6 0 0 61 143 -18.972 -17.671 -3.759 -7.231 -14.167 -0.121 IL 68 68 5 68 6 1 2 70 152 -2.196 -2.196 -0.828 -15.987 -16.763 -16.423 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 69 152 -11.395 -0.001 -14.906 -13.074 -14.180 0.000 0.000 0.000 0.000 [ MATP 17 ] 41 94 u a = = MP 70 69 6 74 6 2 3 68 151 -8.454 -22.533 -0.007 -9.726 -10.554 -17.486 -5.645 -3.248 -9.373 -0.434 -3.057 -5.477 1.821 -9.535 -4.882 1.641 -6.306 -4.041 2.952 -6.402 -1.069 -8.180 ML 71 69 6 74 6 1 1 53 134 -16.602 -16.948 -5.048 -0.101 -16.798 -4.741 -0.902 1.757 -5.365 -4.049 MR 72 69 6 74 6 1 1 63 144 -18.051 -2.382 -3.698 -5.885 -0.497 -7.436 1.509 -2.358 -0.994 -1.132 D 73 69 6 74 6 0 0 59 142 -19.468 -18.166 -2.280 -4.609 -10.433 -0.410 IL 74 74 5 74 6 1 2 67 150 -10.911 -11.173 -0.002 -12.829 -13.605 -13.265 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 67 150 -10.141 -0.002 -13.652 -11.820 -12.926 0.000 0.000 0.000 0.000 [ MATP 18 ] 43 92 c g = = MP 76 75 6 80 4 2 2 66 149 -6.211 -9.225 -0.025 -8.836 -0.387 -4.483 -4.791 -2.567 -1.267 -3.751 2.829 -3.106 1.507 -2.509 -4.145 -2.798 -0.295 -5.157 0.768 0.594 ML 77 75 6 80 4 1 1 48 124 -13.869 -14.052 -0.104 -3.848 -0.782 -3.053 -3.155 1.672 MR 78 75 6 80 4 1 1 57 118 -15.663 -0.336 -3.686 -2.944 -2.914 -2.639 0.710 1.050 D 79 75 6 80 4 0 0 45 121 -14.589 -14.270 -1.398 -0.689 IL 80 80 5 80 4 1 2 83 166 -0.322 -15.493 -2.322 -17.978 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 57 107 -0.534 -1.692 -15.348 0.000 0.000 0.000 0.000 [ MATL 19 ] 49 - A - + - ML 82 81 6 84 3 1 1 46 91 -22.767 -0.005 -8.156 1.864 -3.983 -3.942 -2.107 D 83 81 6 84 3 0 0 43 87 -17.185 -3.640 -0.121 IL 84 84 3 84 3 1 1 47 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 50 - G - + - ML 85 84 3 87 3 1 1 45 90 -8.275 -0.026 -6.063 -0.449 -2.552 1.598 -3.848 D 86 84 3 87 3 0 0 42 87 -17.638 -8.221 -0.005 IL 87 87 3 87 3 1 1 45 90 -9.187 -0.003 -11.887 0.000 0.000 0.000 0.000 [ MATL 21 ] 52 - U - + - ML 88 87 3 90 3 1 1 44 89 -22.741 -0.778 -1.263 -1.644 0.580 -2.958 1.040 D 89 87 3 90 3 0 0 42 87 -18.896 -14.409 -0.000 IL 90 90 3 90 3 1 1 46 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 53 - U - + - ML 91 90 3 93 3 1 1 44 88 -1.315 -0.822 -4.945 -2.978 0.784 -4.218 1.068 D 92 90 3 93 3 0 0 42 87 -22.985 -0.044 -5.066 IL 93 93 3 93 3 1 1 43 88 -3.662 -0.125 -8.026 0.000 0.000 0.000 0.000 [ MATL 23 ] 58 - G - + - ML 94 93 3 96 3 1 1 42 87 -22.731 -0.000 -11.663 -4.590 -6.556 1.961 -4.183 D 95 93 3 96 3 0 0 37 82 -19.245 -2.917 -0.205 IL 96 96 3 96 3 1 1 43 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 59 - G - + - ML 97 96 3 99 3 1 1 41 86 -22.737 -0.017 -6.382 -4.255 -4.283 1.937 -3.904 D 98 96 3 99 3 0 0 35 80 -19.055 -4.083 -0.088 IL 99 99 3 99 3 1 1 42 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 60 - U - + - ML 100 99 3 102 3 1 1 40 85 -0.689 -1.398 -12.699 -0.919 -0.923 -2.747 1.483 D 101 99 3 102 3 0 0 33 78 -4.317 -0.110 -5.425 IL 102 102 3 102 3 1 1 41 85 -0.595 -1.601 -6.897 0.000 0.000 0.000 0.000 [ MATL 26 ] 87 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.737 -3.186 -1.352 -2.598 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 600 1347 -6.046 -0.025 -8.850 IL 108 108 2 108 3 1 2 608 1355 -0.223 -2.807 -16.933 0.000 0.000 0.000 0.000 [ MATL 29 ] 106 - G - + - ML 109 108 2 111 5 1 1 600 1347 -5.757 -0.039 -6.985 -13.227 -11.550 0.475 -2.330 1.094 -1.860 D 110 108 2 111 5 0 0 599 1346 -3.521 -0.483 -9.239 -3.507 -3.216 IL 111 111 3 111 5 1 1 600 1348 -1.381 -0.778 -5.317 -16.979 -6.993 0.000 0.000 0.000 0.000 [ MATP 30 ] 110 226 c g = = MP 112 111 3 116 6 2 3 599 1346 -6.177 -7.294 -0.035 -8.527 -9.938 -22.015 -6.249 -3.149 -5.254 0.061 -2.002 -7.001 2.901 -4.503 -3.493 0.151 -4.224 0.888 1.605 -5.078 -0.369 -3.526 ML 113 111 3 116 6 1 1 596 1343 -16.660 -17.006 -5.672 -0.220 -16.856 -3.036 -10.049 1.825 -1.182 -6.022 MR 114 111 3 116 6 1 1 598 1345 -12.352 -11.081 -4.369 -11.059 -0.076 -9.272 0.009 -0.421 -0.789 0.738 D 115 111 3 116 6 0 0 597 1345 -16.388 -15.086 -10.883 -11.565 -11.582 -0.002 IL 116 116 5 116 6 1 1 600 1347 -0.653 -8.002 -1.535 -7.428 -6.735 -17.027 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 598 1346 -1.825 -0.546 -6.661 -5.782 -7.726 0.000 0.000 0.000 0.000 [ MATP 31 ] 115 223 c g = = MP 118 117 6 122 6 2 2 597 1344 -8.484 -8.436 -0.009 -14.742 -13.884 -11.672 -6.905 -6.745 -7.320 0.492 -5.758 -4.211 2.825 -5.333 -7.960 1.194 -3.856 -1.010 2.023 -3.173 -1.625 -5.168 ML 119 117 6 122 6 1 1 594 1342 -5.324 -17.275 -6.284 -0.150 -17.125 -4.033 -2.800 1.477 -3.671 -0.007 MR 120 117 6 122 6 1 1 597 1344 -14.942 -13.671 -3.055 -13.650 -0.186 -11.863 -0.089 -2.047 1.425 -2.915 D 121 117 6 122 6 0 0 597 1345 -17.624 -16.322 -12.119 -3.419 -12.819 -0.142 IL 122 122 5 122 6 1 1 596 1343 -11.035 -11.298 -0.002 -12.953 -13.729 -13.390 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 596 1343 -10.064 -0.002 -13.575 -11.743 -12.849 0.000 0.000 0.000 0.000 [ MATP 32 ] 117 221 g c = = MP 124 123 6 128 6 2 2 595 1342 -8.266 -6.861 -0.025 -15.660 -7.705 -11.466 -7.309 -5.791 -6.065 1.543 -6.873 -8.056 1.548 -7.822 -8.410 2.849 -2.889 -4.302 1.279 -7.509 -2.157 -4.197 ML 125 123 6 128 6 1 1 593 1340 -16.811 -17.157 -8.136 -0.070 -17.007 -4.507 -5.877 1.921 -2.459 -6.250 MR 126 123 6 128 6 1 1 596 1343 -14.817 -13.546 -2.481 -13.524 -0.292 -7.961 -2.494 -0.391 1.608 -6.394 D 127 123 6 128 6 0 0 598 1345 -18.109 -16.807 -2.778 -6.238 -13.304 -0.250 IL 128 128 5 128 6 1 1 595 1342 -11.123 -1.625 -0.567 -13.041 -13.817 -13.478 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 595 1343 -0.805 -1.226 -16.538 -14.705 -15.811 0.000 0.000 0.000 0.000 [ MATP 33 ] 119 217 G C = = MP 130 129 6 134 6 2 2 593 1340 -7.526 -8.596 -0.014 -16.597 -9.167 -14.456 -9.538 -4.524 -7.307 -3.539 -8.149 -8.025 1.440 -8.451 -7.737 3.587 -8.959 -0.959 -4.501 -6.735 -1.599 -2.170 ML 131 129 6 134 6 1 1 592 1339 -16.750 -17.096 -5.787 -0.031 -16.946 -8.230 -5.822 -4.263 1.972 -7.408 MR 132 129 6 134 6 1 1 595 1343 -16.689 -4.702 -2.966 -15.396 -0.601 -2.519 -4.100 0.291 1.430 -5.412 D 133 129 6 134 6 0 0 599 1346 -18.289 -16.987 -8.391 -3.043 -5.082 -0.241 IL 134 134 5 134 6 1 1 592 1340 -1.443 -12.779 -0.662 -14.434 -15.211 -14.871 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 592 1339 -10.026 -0.002 -13.537 -11.705 -12.810 0.000 0.000 0.000 0.000 [ MATP 34 ] 122 215 c g = = MP 136 135 6 140 4 2 2 591 1338 -7.492 -22.049 -0.009 -11.247 -8.128 -4.418 -3.965 2.478 -7.030 -7.191 2.494 -6.164 -7.627 1.583 -6.140 -2.051 0.270 -7.621 -3.364 -3.524 ML 137 135 6 140 4 1 1 591 1338 -1.952 -14.044 -0.432 -12.774 1.562 -7.098 0.049 -7.814 MR 138 135 6 140 4 1 1 593 1341 -1.017 -1.978 -2.612 -3.497 -0.808 -1.801 1.610 -3.485 D 139 135 6 140 4 0 0 600 1347 -14.001 -13.682 -1.522 -0.618 IL 140 140 5 140 4 1 1 592 1340 -0.592 -3.476 -2.020 -16.937 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 590 1337 -9.629 -0.002 -12.330 0.000 0.000 0.000 0.000 [ MATL 35 ] 127 - C - + - ML 142 141 6 144 3 1 1 589 1336 -6.561 -0.016 -13.110 -3.499 1.542 -6.689 -0.014 D 143 141 6 144 3 0 0 605 1352 -15.962 -2.027 -0.406 IL 144 144 3 144 3 1 1 591 1338 -1.018 -1.048 -5.452 0.000 0.000 0.000 0.000 [ MATL 36 ] 131 - U - + - ML 145 144 3 147 3 1 1 588 1335 -22.774 -0.000 -18.548 -5.104 -3.369 -5.304 1.944 D 146 144 3 147 3 0 0 609 1356 -15.860 -1.216 -0.812 IL 147 147 3 147 3 1 1 593 1340 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 132 - c - * - ML 148 147 3 150 3 1 1 587 1334 -22.776 -0.001 -10.812 -0.118 0.082 0.056 -0.028 D 149 147 3 150 3 0 0 620 1368 -15.051 -1.409 -0.682 IL 150 150 3 150 3 1 1 594 1342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 133 - c - * - ML 151 150 3 153 3 1 1 586 1333 -22.776 -0.000 -16.687 -0.084 0.137 -0.055 -0.007 D 152 150 3 153 3 0 0 632 1380 -14.959 -2.755 -0.231 IL 153 153 3 153 3 1 1 595 1342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 134 - a - * - ML 154 153 3 156 3 1 1 585 1332 -22.776 -0.000 -16.012 0.084 -0.080 0.040 -0.051 D 155 153 3 156 3 0 0 637 1384 -14.739 -2.339 -0.318 IL 156 156 3 156 3 1 1 596 1343 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 135 - A - + - ML 157 156 3 159 3 1 1 584 1331 -2.583 -0.264 -12.529 1.513 -5.571 0.145 -5.681 D 158 156 3 159 3 0 0 644 1391 -0.421 -7.458 -2.015 IL 159 159 3 159 3 1 1 655 1403 -0.036 -5.452 -9.380 0.000 0.000 0.000 0.000 [ MATL 41 ] 213 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.620 -1.338 -3.457 -1.184 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 290 655 -22.778 -0.010 -7.124 IL 165 165 2 165 3 1 5 292 656 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 227 - a - + - ML 166 165 2 168 3 1 3 290 655 -22.768 -0.244 -2.685 0.822 -1.327 -0.586 0.223 D 167 165 2 168 3 0 1 288 653 -17.074 -9.170 -0.003 IL 168 168 3 168 3 1 4 291 656 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 228 - G - + - ML 169 168 3 171 2 1 2 289 654 -5.734 -0.027 -1.676 -1.910 1.644 -1.755 D 170 168 3 171 2 0 1 288 653 -19.787 -0.000 IL 171 171 3 171 2 1 3 290 655 -1.589 -0.583 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 288 653 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 66 136 -2.025 -9.284 -7.391 -0.421 [ MATP 48 ] 232 282 G C = = MP 174 173 1 178 6 2 2 71 141 -20.613 -20.553 -0.001 -11.271 -13.337 -20.004 -9.378 -1.718 -3.910 1.276 -9.265 -7.304 0.884 -8.737 -10.960 3.153 -1.196 -0.142 -0.454 -7.086 -1.450 -7.016 ML 175 173 1 178 6 1 1 69 139 -14.235 -14.581 -0.545 -2.095 -14.431 -3.638 1.050 -1.327 -1.431 0.214 MR 176 173 1 178 6 1 1 69 139 -16.659 -15.388 -0.116 -8.525 -4.718 -4.765 -5.446 1.697 -3.202 -0.673 D 177 173 1 178 6 0 0 53 123 -26.241 -24.939 -13.609 -18.208 -13.378 -0.000 IL 178 178 5 178 6 1 1 70 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 70 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 233 281 g c = = MP 180 179 6 184 6 2 2 69 139 -20.651 -20.591 -0.019 -11.581 -8.628 -6.659 -7.706 -3.391 -10.228 0.566 -1.596 -9.334 1.444 -9.876 -10.891 2.355 -5.560 -2.550 2.303 -9.024 -0.733 -0.945 ML 181 179 6 184 6 1 1 66 136 -12.540 -12.887 -1.201 -1.042 -12.736 -3.665 0.199 -0.923 0.733 -0.593 MR 182 179 6 184 6 1 1 57 127 -12.453 -11.182 -5.698 -11.160 -0.375 -2.262 -1.736 -1.424 -0.199 1.296 D 183 179 6 184 6 0 0 53 123 -26.241 -24.939 -20.736 -21.418 -21.436 -0.000 IL 184 184 5 184 6 1 1 68 138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 68 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 234 280 c g = = MP 186 185 6 190 6 2 2 67 137 -4.339 -5.001 -0.427 -5.705 -6.587 -2.774 -7.857 -7.005 -7.701 1.706 -1.928 -3.120 2.511 -6.592 -5.527 2.156 -4.806 -1.578 -0.143 -3.788 -0.339 -6.303 ML 187 185 6 190 6 1 1 64 134 -11.934 -12.280 -2.986 -0.918 -12.130 -1.540 -0.776 0.180 1.018 -1.956 MR 188 185 6 190 6 1 1 55 125 -13.915 -12.643 -6.789 -12.622 -2.266 -0.353 -4.069 -0.062 1.209 -0.575 D 189 185 6 190 6 0 0 53 123 -26.246 -24.944 -20.741 -21.423 -21.441 -0.000 IL 190 190 5 190 6 1 1 67 137 -2.186 -6.897 -0.381 -15.339 -8.036 -15.776 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 67 137 -2.041 -0.433 -15.448 -7.561 -6.480 0.000 0.000 0.000 0.000 [ MATP 51 ] 237 277 C G = = MP 192 191 6 196 6 2 2 65 135 -20.354 -4.841 -0.603 -8.252 -6.621 -1.769 -4.838 -6.806 -10.700 -1.604 -4.711 -6.450 3.079 -9.489 -9.060 2.235 -5.207 -0.393 -0.168 -2.108 -1.059 -5.300 ML 193 191 6 196 6 1 1 65 135 -15.857 -16.203 -0.196 -4.979 -7.031 -3.517 -9.240 -3.538 1.883 -2.157 MR 194 191 6 196 6 1 1 55 125 -15.617 -14.346 -10.254 -5.065 -3.458 -0.187 0.558 0.605 -0.659 -1.422 D 195 191 6 196 6 0 0 53 123 -26.316 -25.014 -17.366 -17.273 -13.345 -0.000 IL 196 196 5 196 6 1 1 66 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 68 138 -0.726 -1.339 -16.240 -14.408 -15.514 0.000 0.000 0.000 0.000 [ MATP 52 ] 238 273 g u = = MP 198 197 6 202 6 2 2 64 134 -4.695 -5.019 -0.457 -9.870 -5.069 -2.545 -8.076 -4.935 -10.221 0.217 -1.906 -7.971 1.960 -10.421 -7.586 1.950 -6.933 2.285 -0.450 -1.598 -0.289 -7.962 ML 199 197 6 202 6 1 1 58 128 -13.434 -13.780 -3.052 -2.546 -3.933 -0.638 -0.992 -0.399 0.994 -0.419 MR 200 197 6 202 6 1 1 56 126 -15.384 -14.113 -6.599 -4.358 -1.984 -0.540 -0.311 0.639 -0.015 -0.627 D 201 197 6 202 6 0 0 53 123 -26.427 -25.126 -14.935 -15.229 -14.697 -0.000 IL 202 202 5 202 6 1 1 66 136 -1.172 -1.172 -3.158 -14.707 -15.483 -15.143 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 64 134 -11.727 -0.001 -15.238 -13.406 -14.512 0.000 0.000 0.000 0.000 [ MATP 53 ] 241 271 c g = = MP 204 203 6 208 6 2 2 63 133 -3.767 -19.484 -0.880 -9.654 -4.925 -1.519 -3.289 -9.127 -7.361 0.339 -6.156 -5.272 2.588 -7.030 -2.405 1.568 0.956 -4.834 1.292 -11.218 -0.166 -3.396 ML 205 203 6 208 6 1 1 58 128 -12.427 -12.773 -5.802 -2.680 -3.775 -0.410 0.168 -1.597 0.631 -0.005 MR 206 203 6 208 6 1 1 56 126 -16.430 -15.159 -11.067 -15.137 -2.965 -0.199 -1.682 -1.328 -1.320 1.531 D 207 203 6 208 6 0 0 53 123 -26.473 -25.171 -15.623 -16.690 -17.315 -0.000 IL 208 208 5 208 6 1 1 64 134 -1.538 -13.417 -0.609 -15.073 -15.849 -15.509 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 63 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 244 270 C G = = MP 210 209 6 214 4 2 2 62 132 -18.077 -0.211 -2.878 -16.699 -6.861 -8.325 -11.753 -0.490 -1.636 -0.076 3.057 -7.682 -1.409 1.352 -12.311 -2.636 0.842 -7.440 -0.507 -3.560 ML 211 209 6 214 4 1 1 61 131 -8.512 -1.052 -0.973 -7.424 1.073 -0.686 -1.439 -0.142 MR 212 209 6 214 4 1 1 60 130 -14.294 -4.258 -0.079 -10.251 -2.865 -3.532 1.746 -1.245 D 213 209 6 214 4 0 0 53 123 -21.968 -7.016 -2.607 -0.272 IL 214 214 5 214 4 1 1 61 131 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 60 130 -4.178 -0.086 -8.618 0.000 0.000 0.000 0.000 [ MATL 55 ] 245 - g - + - ML 216 215 6 218 3 1 1 59 129 -20.691 -0.002 -9.730 -1.481 -0.791 0.858 0.323 D 217 215 6 218 3 0 0 44 113 -23.810 -9.276 -0.002 IL 218 218 3 218 3 1 1 60 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 246 - u - + - ML 219 218 3 221 3 1 1 58 128 -20.697 -0.032 -5.527 0.306 0.239 -1.656 0.340 D 220 218 3 221 3 0 0 43 113 -23.808 -11.952 -0.000 IL 221 221 3 221 3 1 1 59 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 247 - A - + - ML 222 221 3 224 3 1 1 57 127 -2.354 -0.810 -2.095 1.246 -1.141 -1.754 -0.187 D 223 221 3 224 3 0 0 43 113 -7.350 -11.487 -0.009 IL 224 224 3 224 3 1 1 63 132 -0.380 -2.413 -4.514 0.000 0.000 0.000 0.000 [ MATL 58 ] 267 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.207 -0.986 -0.349 -1.320 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 283 648 -22.778 -0.129 -3.542 IL 230 230 2 230 3 1 2 285 650 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 283 - G - + - ML 231 230 2 233 3 1 1 284 648 -0.458 -1.890 -8.653 -0.413 -4.677 1.535 -1.683 D 232 230 2 233 3 0 0 282 647 -6.076 -0.026 -8.437 IL 233 233 3 233 3 1 6 283 648 -5.065 -0.044 -14.702 0.000 0.000 0.000 0.000 [ MATL 62 ] 287 - C - + - ML 234 233 3 236 5 1 5 282 647 -21.707 -0.000 -17.694 -15.890 -15.824 -4.673 1.659 -2.187 -0.781 D 235 233 3 236 5 0 0 276 641 -13.536 -4.358 -10.093 -0.294 -2.896 IL 236 236 3 236 5 1 1 282 647 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 288 390 g c = = MP 237 236 3 241 6 2 4 281 646 -8.459 -6.102 -0.035 -16.284 -7.277 -22.026 -8.490 -5.623 -2.868 0.532 -6.943 -8.419 2.023 -6.349 -9.722 2.749 -2.876 1.468 -0.728 -5.539 -4.378 -6.970 ML 238 236 3 241 6 1 1 280 645 -7.249 -7.596 -2.310 -0.417 -7.445 -4.975 0.484 0.054 -0.770 -0.034 MR 239 236 3 241 6 1 1 276 641 -15.154 -7.998 -9.016 -13.862 -0.030 -6.108 -0.369 -1.505 1.502 -4.636 D 240 236 3 241 6 0 0 276 640 -15.234 -13.933 -9.730 -10.412 -10.429 -0.004 IL 241 241 5 241 6 1 3 280 645 -10.948 -11.211 -0.002 -12.866 -13.642 -13.302 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 3 280 645 -1.390 -0.703 -8.777 -9.163 -15.889 0.000 0.000 0.000 0.000 [ MATP 64 ] 290 386 c g = = MP 243 242 6 247 6 2 3 279 644 -6.615 -9.801 -0.018 -11.323 -9.963 -22.016 -5.453 -5.078 -7.225 0.926 -5.717 -6.736 2.859 -7.311 -8.172 1.009 -7.897 -0.877 1.885 -5.399 -1.303 -3.906 ML 244 242 6 247 6 1 1 280 644 -9.872 -10.218 -3.038 -0.200 -10.068 -7.598 0.874 0.452 -1.497 -1.169 MR 245 242 6 247 6 1 1 275 640 -17.177 -15.906 -2.447 -9.471 -0.296 -10.742 -4.144 1.611 -0.177 -7.954 D 246 242 6 247 6 0 0 276 640 -15.349 -14.047 -2.143 -10.526 -10.544 -0.373 IL 247 247 5 247 6 1 3 280 645 -12.778 -0.216 -2.847 -14.697 -15.473 -15.133 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 3 279 644 -0.731 -1.330 -16.687 -14.855 -15.960 0.000 0.000 0.000 0.000 [ MATP 65 ] 292 382 G C = = MP 249 248 6 253 6 2 2 277 642 -5.928 -7.029 -0.035 -21.342 -15.736 -13.473 -5.972 -2.561 -8.116 1.244 -8.337 -7.379 0.370 -6.746 -8.147 3.391 -8.364 -1.691 -0.368 -8.032 -0.930 -5.293 ML 250 248 6 253 6 1 1 279 644 -12.458 -0.292 -2.714 -5.072 -12.654 -10.183 1.831 -1.755 -3.617 -3.935 MR 251 248 6 253 6 1 1 273 638 -17.074 -3.006 -8.319 -15.781 -3.866 -0.315 -0.864 -2.333 1.684 -4.658 D 252 248 6 253 6 0 0 275 640 -15.002 -13.700 -5.972 -1.458 -10.197 -0.692 IL 253 253 5 253 6 1 3 276 641 -1.427 -5.302 -0.731 -16.055 -16.831 -16.491 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 2 278 643 -0.968 -1.189 -16.360 -4.315 -15.633 0.000 0.000 0.000 0.000 [ MATP 66 ] 296 378 G C = = MP 255 254 6 259 6 2 2 275 639 -8.361 -22.566 -0.059 -5.099 -7.739 -8.222 -11.608 -4.013 -11.985 0.840 -10.183 -7.701 -1.372 -9.970 -7.225 3.752 -10.229 -3.998 -2.381 -7.387 -6.222 -9.136 ML 256 254 6 259 6 1 1 283 648 -10.598 -10.944 -3.404 -1.027 -10.794 -1.276 -1.789 -0.200 1.341 -1.700 MR 257 254 6 259 6 1 1 286 651 -14.720 -13.449 -8.340 -13.427 -0.019 -6.679 1.371 0.266 -2.652 -4.257 D 258 254 6 259 6 0 0 269 634 -19.433 -18.131 -8.774 -14.611 -14.628 -0.003 IL 259 259 5 259 6 1 1 273 638 -11.037 -11.300 -0.002 -12.955 -13.731 -13.391 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 275 640 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 298 377 G C = = MP 261 260 6 265 4 2 2 272 637 -6.385 -22.009 -0.018 -11.707 -10.752 -6.289 -10.427 -5.395 -10.558 -6.100 -16.177 -11.496 -7.000 3.988 -6.046 -5.581 -6.007 -5.848 -18.047 -10.414 ML 262 260 6 265 4 1 3 290 655 -15.490 -0.005 -8.231 -14.402 -8.096 -6.863 1.996 -12.941 MR 263 260 6 265 4 1 1 285 650 -14.736 -0.580 -2.048 -3.484 -0.633 -1.341 -1.839 1.423 D 264 260 6 265 4 0 0 269 634 -15.446 -15.127 -1.610 -0.573 IL 265 265 5 265 4 1 3 275 640 -0.322 -15.290 -2.322 -17.776 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 3 289 654 -0.119 -3.658 -18.910 0.000 0.000 0.000 0.000 [ MATL 68 ] 304 - U - + - ML 267 266 6 269 3 1 2 270 634 -6.113 -0.021 -21.421 -4.259 -7.039 -7.417 1.976 D 268 266 6 269 3 0 0 269 633 -17.155 -0.009 -7.301 IL 269 269 3 269 3 1 1 271 636 -0.665 -1.437 -15.485 0.000 0.000 0.000 0.000 [ MATL 69 ] 309 - U - + - ML 270 269 3 272 3 1 1 269 633 -22.778 -0.000 -18.297 -6.772 -4.680 -5.857 1.976 D 271 269 3 272 3 0 0 261 626 -9.890 -0.676 -1.422 IL 272 272 3 272 3 1 1 268 633 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 310 - C - + - ML 273 272 3 275 3 1 1 268 632 -4.838 -0.051 -21.432 -4.925 1.967 -6.052 -4.557 D 274 272 3 275 3 0 0 237 602 -8.749 -2.840 -0.221 IL 275 275 3 275 3 1 1 296 660 -0.093 -4.000 -19.334 0.000 0.000 0.000 0.000 [ MATL 71 ] 327 - G - + - ML 276 275 3 278 3 1 1 264 629 -8.052 -0.006 -10.720 0.528 -5.441 1.332 -5.828 D 277 275 3 278 3 0 0 223 588 -8.617 -2.937 -0.206 IL 278 278 3 278 3 1 1 264 629 -9.425 -0.002 -12.125 0.000 0.000 0.000 0.000 [ MATL 72 ] 329 - A - + - ML 279 278 3 281 3 1 1 263 628 -4.367 -0.072 -11.952 1.967 -6.060 -4.369 -5.199 D 280 278 3 281 3 0 0 136 501 -13.521 -9.034 -0.003 IL 281 281 3 281 3 1 1 322 687 -0.073 -4.345 -20.148 0.000 0.000 0.000 0.000 [ MATL 73 ] 354 - a - + - ML 282 281 3 284 3 1 1 55 135 -5.721 -0.030 -9.353 0.955 -2.012 -0.046 -0.244 D 283 281 3 284 3 0 0 29 109 -14.019 -9.532 -0.002 IL 284 284 3 284 3 1 1 71 151 -0.333 -2.278 -16.728 0.000 0.000 0.000 0.000 [ MATL 74 ] 362 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.369 -0.562 -4.581 1.693 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME all-042516 LENG 90 MAXL 665 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Tue Apr 26 00:36:55 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/all-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/all-042516.sto NSEQ 109245 EFFN 494.786804 CKSUM 4144942527 STATS LOCAL MSV -8.7006 0.71856 STATS LOCAL VITERBI -9.7572 0.71856 STATS LOCAL FORWARD -3.0710 0.71856 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58397 1.31255 1.16417 1.54399 1.38629 1.38629 1.38629 1.38629 0.61531 0.83817 3.61104 0.12060 2.17501 0.00000 * 1 3.60447 2.79507 0.15798 2.85035 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01137 5.44222 4.96556 0.11961 2.18270 1.09861 0.40547 2 3.63790 0.94553 0.67226 2.59479 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01563 5.20741 4.60201 0.49676 0.93776 1.29635 0.31955 3 1.71743 1.09004 1.05355 1.99823 7 g = - ( 1.38629 1.38629 1.38629 1.38629 0.00980 5.14194 5.54404 0.62070 0.77126 2.07778 0.13377 4 2.35104 1.11070 0.82242 1.99485 10 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02553 3.92054 5.22657 0.76871 0.62290 1.91144 0.16001 5 1.70748 1.01948 1.08866 2.11007 15 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01116 8.21848 4.52559 1.46634 0.26236 1.01812 0.44828 6 1.80807 1.17836 1.08645 1.65636 16 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01820 4.03965 7.73689 0.37245 1.16810 1.82504 0.17580 7 1.36373 3.02534 0.52827 2.24308 20 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02040 4.12382 5.51779 1.46787 0.26191 0.24795 1.51593 8 3.24863 4.40720 4.12784 0.06949 27 U + - , 1.38629 1.38629 1.38629 1.38629 0.02472 3.77505 6.51705 0.62695 0.76403 0.13464 2.07175 9 0.58541 3.40088 0.97434 3.43155 32 A + - , 1.38629 1.38629 1.38629 1.38629 0.04385 3.54701 4.26189 0.09472 2.40385 0.46270 0.99312 10 3.52928 2.79168 0.12596 3.58600 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.01406 5.13649 4.81788 0.49953 0.93348 3.38583 0.03444 11 3.56061 0.35549 3.03152 1.50279 38 C = - < 1.38629 1.38629 1.38629 1.38629 0.02313 3.91620 5.82558 0.26528 1.45667 2.31241 0.10427 12 2.82272 1.44988 1.60482 0.68313 41 U = - < 1.38629 1.38629 1.38629 1.38629 0.00433 5.78414 6.69147 0.16465 1.88512 1.28755 0.32289 13 2.65172 0.75617 1.60415 1.35113 43 c = - < 1.38629 1.38629 1.38629 1.38629 0.01678 4.30060 5.78291 1.60786 0.22354 0.36176 1.19221 14 0.09683 4.08636 4.07630 2.83846 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00402 8.24780 5.58657 1.46634 0.26236 2.26932 0.10913 15 1.69848 3.14020 0.28110 3.97337 50 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01878 5.66316 4.19114 0.14497 2.00286 3.65070 0.02632 16 2.50988 0.98449 3.41091 0.66927 52 U + - _ 1.38629 1.38629 1.38629 1.38629 0.53580 8.22999 0.88061 1.46634 0.26236 4.60567 0.01005 17 3.37815 0.84424 4.22397 0.65131 53 U + - _ 1.38629 1.38629 1.38629 1.38629 0.56355 0.92077 3.42335 0.08088 2.55495 0.03150 3.47338 18 4.51295 5.83049 0.02833 4.26679 58 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00182 8.22386 6.46940 1.46634 0.26236 1.95786 0.15217 19 4.24764 4.31737 0.04608 4.05145 59 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01187 8.22696 4.46221 1.46634 0.26236 2.20250 0.11712 20 2.01872 2.02396 3.26122 0.36140 60 U + - _ 1.38629 1.38629 1.38629 1.38629 0.96207 0.48211 7.77894 1.07567 0.41714 0.03873 3.27056 21 0.18417 3.56385 2.32481 3.16842 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.49754 4.20936 1.17779 0.36811 0.60356 0.79156 22 1.20871 3.58548 0.60946 2.03981 92 G = - > 1.38629 1.38629 1.38629 1.38629 0.00525 5.71578 6.24617 0.15311 1.95216 2.18860 0.11887 23 0.71646 1.60201 1.37813 2.84769 94 a = - > 1.38629 1.38629 1.38629 1.38629 0.00831 4.89114 7.17901 0.06880 2.71074 1.43967 0.27050 24 1.60351 3.03411 0.33627 3.31700 96 G = - > 1.38629 1.38629 1.38629 1.38629 0.00753 5.78514 5.42049 0.16317 1.89346 2.14150 0.12497 25 3.61244 0.29483 2.78921 1.79044 98 C = - > 1.38629 1.38629 1.38629 1.38629 0.01790 4.16444 6.11771 1.94200 0.15480 0.03733 3.30668 26 1.06236 2.98451 0.62795 2.65765 106 G + - , 1.38629 1.38629 1.38629 1.38629 0.01928 3.99526 7.27143 0.50742 0.92142 0.41911 1.07187 27 2.52250 0.73628 1.63926 1.39948 110 c = - < 1.38629 1.38629 1.38629 1.38629 0.01641 4.30302 5.89513 1.03331 0.43979 1.79294 0.18209 28 2.35767 0.81535 1.71955 1.25974 115 c = - < 1.38629 1.38629 1.38629 1.38629 0.00489 5.72405 6.42981 0.15262 1.95517 1.84299 0.17238 29 1.69222 1.65917 0.78736 1.76874 117 g = - < 1.38629 1.38629 1.38629 1.38629 0.00925 5.66671 5.15898 0.14458 2.00531 1.64943 0.21339 30 4.29403 1.78744 0.24946 3.22537 119 G = - < 1.38629 1.38629 1.38629 1.38629 0.00768 5.18391 6.19037 0.50738 0.92148 0.78235 0.61126 31 1.04103 1.05717 1.58562 2.35757 122 a = - < 1.38629 1.38629 1.38629 1.38629 0.00885 4.81067 7.31580 1.30955 0.31463 0.62355 0.76795 32 3.74689 0.32117 5.73448 1.39482 127 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01075 4.57399 7.89460 0.72111 0.66595 1.33878 0.30404 33 4.78799 3.68368 4.96917 0.04125 131 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00068 8.25292 7.78631 1.46634 0.26236 0.98481 0.46763 34 1.46229 1.33468 1.35277 1.40028 132 c * - _ 1.38629 1.38629 1.38629 1.38629 0.00107 8.25377 7.11463 1.46634 0.26236 1.01243 0.45151 35 1.43949 1.29694 1.42848 1.38664 133 c * - _ 1.38629 1.38629 1.38629 1.38629 0.00053 8.25388 8.21961 1.46634 0.26236 1.57288 0.23250 36 1.32496 1.44499 1.36329 1.41626 134 a * - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25411 8.24632 1.46634 0.26236 0.45843 1.00042 37 0.33838 5.15499 1.28779 5.21649 135 A + - _ 1.38629 1.38629 1.38629 1.38629 0.18310 1.79042 7.75718 3.71300 0.02471 1.39196 0.28580 38 0.26520 2.31219 3.74612 2.20463 213 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01771 5.38584 4.34503 0.10986 2.26298 1.04679 0.43242 39 2.48801 1.65718 1.01650 1.00953 215 u = - > 1.38629 1.38629 1.38629 1.38629 0.00359 5.79131 7.54904 0.16428 1.88720 2.30879 0.10467 40 5.04484 0.29432 1.65544 2.85572 217 C = - > 1.38629 1.38629 1.38629 1.38629 0.01059 4.62067 7.28608 0.86365 0.54752 3.01883 0.05009 41 1.87072 0.80449 1.57217 1.65509 221 c = - > 1.38629 1.38629 1.38629 1.38629 0.00379 5.76748 7.32850 0.16046 1.90888 2.88268 0.05761 42 1.36406 1.86280 0.77313 2.05905 223 g = - > 1.38629 1.38629 1.38629 1.38629 0.00708 5.01653 7.74927 0.38715 1.13629 1.41016 0.27985 43 1.54471 2.48826 0.67003 1.65089 226 G = - > 1.38629 1.38629 1.38629 1.38629 0.00057 8.24610 8.09211 1.46634 0.26236 1.37949 0.28996 44 0.82176 2.28977 1.79035 1.23048 227 a + - , 1.38629 1.38629 1.38629 1.38629 0.16855 8.24837 1.86531 1.46634 0.26236 3.37348 0.03487 45 2.52803 2.70468 0.25044 2.59247 228 G + - , 1.38629 1.38629 1.38629 1.38629 2.19671 3.97539 0.13919 0.42635 1.05810 0.12369 2.15122 46 1.72011 2.15833 0.46234 2.58192 232 G = - < 1.38629 1.38629 1.38629 1.38629 0.00316 6.87593 6.15281 1.46634 0.26236 4.86809 0.00772 47 2.20203 1.61479 1.13910 0.99322 233 u = - < 1.38629 1.38629 1.38629 1.38629 0.01440 6.89647 4.32100 1.46634 0.26236 7.94501 0.00035 48 1.57142 1.01560 1.22672 1.98916 234 c = - < 1.38629 1.38629 1.38629 1.38629 0.22823 3.01489 1.86429 0.27879 1.41347 7.94240 0.00036 49 3.22315 0.69756 1.07795 2.10308 237 c = - < 1.38629 1.38629 1.38629 1.38629 0.34725 6.71694 1.23044 1.46634 0.26236 7.70399 0.00045 50 2.33406 1.36444 0.68368 1.94619 238 G = - < 1.38629 1.38629 1.38629 1.38629 0.27062 3.25350 1.61719 0.62460 0.76674 7.54107 0.00053 51 2.13331 1.05650 1.21245 1.44217 241 c = - < 1.38629 1.38629 1.38629 1.38629 0.57987 2.63236 0.99934 0.45479 1.00670 8.03434 0.00032 52 2.36005 0.69482 1.60870 1.57854 244 c = - < 1.38629 1.38629 1.38629 1.38629 0.00671 5.70082 5.70082 1.46634 0.26236 1.73836 0.19335 53 2.27618 1.92084 0.81953 1.17054 245 g + - _ 1.38629 1.38629 1.38629 1.38629 0.00332 6.82732 6.10495 1.46634 0.26236 6.23905 0.00195 54 1.17630 1.24229 2.44682 1.15109 246 u + - _ 1.38629 1.38629 1.38629 1.38629 0.00536 6.83128 5.45756 1.46634 0.26236 6.84749 0.00106 55 0.55083 2.13683 2.51153 1.49453 247 A + - _ 1.38629 1.38629 1.38629 1.38629 0.48274 1.60868 1.69961 1.43343 0.27245 6.81085 0.00110 56 0.58101 2.03717 1.63852 2.15413 267 A + - _ 1.38629 1.38629 1.38629 1.38629 1.76329 1.33515 0.57022 0.08463 2.51150 5.45628 0.00428 57 1.70030 1.60060 0.69541 2.14792 270 g = - > 1.38629 1.38629 1.38629 1.38629 0.07281 5.83868 2.69850 1.46634 0.26236 3.03236 0.04940 58 1.66467 1.67909 0.73276 1.94056 271 g = - > 1.38629 1.38629 1.38629 1.38629 0.07967 2.62061 5.56625 0.05526 2.92324 3.46959 0.03162 59 2.40281 1.33536 1.23341 1.03514 273 u = - > 1.38629 1.38629 1.38629 1.38629 0.08158 3.03760 3.49357 0.94411 0.49270 2.59024 0.07796 60 2.49110 1.21453 0.62794 2.44598 277 G = - > 1.38629 1.38629 1.38629 1.38629 0.03987 3.27864 6.56965 0.32581 1.27993 2.93392 0.05465 61 2.32748 1.28118 0.93284 1.46399 280 g = - > 1.38629 1.38629 1.38629 1.38629 0.00288 6.88634 6.28846 1.46634 0.26236 5.55442 0.00388 62 1.13915 1.16817 1.50873 1.91202 281 a = - > 1.38629 1.38629 1.38629 1.38629 0.00681 6.89579 5.15407 1.46634 0.26236 7.13656 0.00080 63 2.96402 0.56310 1.80866 1.53678 282 C = - > 1.38629 1.38629 1.38629 1.38629 0.34343 6.89232 1.23908 1.46634 0.26236 0.01456 4.23648 64 1.67398 4.50852 0.32434 2.54492 283 G + - , 1.38629 1.38629 1.38629 1.38629 1.29180 0.32507 5.89655 0.03113 3.48496 0.00904 4.71103 65 4.48808 0.23903 2.90297 1.92066 287 C + - , 1.38629 1.38629 1.38629 1.38629 0.00058 8.25302 8.05220 1.46634 0.26236 2.15183 0.12361 66 2.27328 1.37809 0.51028 3.10915 288 G = - < 1.38629 1.38629 1.38629 1.38629 0.00984 5.78073 5.00484 0.16098 1.90586 2.50988 0.08477 67 2.07084 0.80317 1.81630 1.33412 290 c = - < 1.38629 1.38629 1.38629 1.38629 0.01173 4.56567 6.67830 0.04966 3.02732 1.61717 0.22122 68 1.82476 2.49500 0.39722 2.47621 292 G = - < 1.38629 1.38629 1.38629 1.38629 0.01709 4.09944 7.91001 0.48160 0.96179 3.11538 0.04538 69 2.13608 3.63022 0.17507 4.13663 296 G = - < 1.38629 1.38629 1.38629 1.38629 0.01165 5.71812 4.79205 0.15246 1.95611 3.47481 0.03146 70 5.30652 6.20150 0.01036 5.70707 298 G = - < 1.38629 1.38629 1.38629 1.38629 0.01244 4.43901 7.50195 1.60763 0.22360 0.61657 0.77607 71 4.26697 5.75991 6.14165 0.01952 304 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01501 4.22459 8.24796 1.00248 0.45724 0.07034 2.68944 72 5.68075 4.52031 5.30645 0.01944 309 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25548 8.24500 1.46634 0.26236 1.04745 0.43206 73 4.76022 0.02404 5.49752 4.50162 310 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03593 3.35157 8.25551 2.76933 0.06476 1.11462 0.39756 74 1.02155 5.03877 0.46504 5.22705 327 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00487 5.51979 7.07163 0.12500 2.14129 1.11392 0.39790 75 0.02460 5.43212 4.38139 4.90371 329 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05018 3.02758 7.57988 3.00919 0.05059 1.67242 0.20800 76 0.73003 2.74620 1.42222 1.54762 354 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02112 3.95731 6.33097 1.57815 0.23112 1.83883 0.17317 77 4.33338 1.78111 4.50809 0.21393 362 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04430 3.40562 4.59098 2.46082 0.08923 0.26314 1.46376 78 5.55271 0.01638 5.80773 4.67067 377 C = - > 1.38629 1.38629 1.38629 1.38629 0.00055 8.24541 8.15592 1.46634 0.26236 1.10148 0.40403 79 4.18757 0.17778 3.58649 2.12032 378 C = - > 1.38629 1.38629 1.38629 1.38629 0.00989 4.65574 8.00089 0.75518 0.63474 0.11657 2.20695 80 2.95927 0.41793 2.13543 1.76293 382 C = - > 1.38629 1.38629 1.38629 1.38629 0.01044 4.60251 7.94355 0.93396 0.49922 1.25146 0.33700 81 1.45639 1.99774 0.75409 1.82733 386 g = - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.22223 8.25512 0.50000 0.93275 1.36703 0.29419 82 3.21005 0.85821 1.30552 1.32919 390 c = - > 1.38629 1.38629 1.38629 1.38629 0.03418 3.44224 6.43111 0.38936 1.13163 0.62354 0.76797 83 2.26127 0.55455 2.99331 1.30442 394 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01701 4.11127 7.64691 1.01227 0.45161 0.50237 0.92910 84 1.98200 1.22535 1.03413 1.54639 399 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02291 3.80579 7.80328 1.33811 0.30427 1.45612 0.26545 85 2.37725 1.20381 0.93378 1.54140 406 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01693 4.11309 7.75298 1.05900 0.42588 1.08614 0.41176 86 2.40179 0.83218 1.04140 2.10880 411 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01612 4.15399 8.16017 1.19091 0.36233 1.32546 0.30881 87 1.95075 1.16028 1.06900 1.60404 417 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03202 3.59080 5.53811 1.06813 0.42106 0.93919 0.49585 88 2.59199 0.66997 1.01327 2.98824 422 C = - ) 1.38629 1.38629 1.38629 1.38629 0.05903 2.86395 8.17996 1.28520 0.32379 0.12402 2.14871 89 3.03897 0.16354 2.77260 3.20687 428 C = - ) 1.38629 1.38629 1.38629 1.38629 0.43644 1.04016 8.22713 1.07451 0.41774 0.98662 0.46655 90 0.24111 3.51315 1.98062 3.06917 432 A + - : 1.38629 1.38629 1.38629 1.38629 1.14543 0.38285 * 1.38747 0.28729 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNA2-arch.cm0000644000543100007160000013445311021467310016752 0ustar pchanlowelab### cove V2 75 nodes ### node 0 type 6 1 -1 0.80303 0.00000 0.00000 0.13636 0.04545 0.01515 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.33333 0.16667 0.16667 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.16667 0.16667 0.50000 0.16667 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 3 2 -1 0.96429 0.00000 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.76923 0.07692 0.07692 0.07692 # MATR ### node 2 type 3 3 -1 0.94643 0.00000 0.00000 0.03571 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.07692 0.76923 0.07692 0.07692 # MATR ### node 3 type 3 4 -1 0.01818 0.00000 0.00000 0.96364 0.00000 0.01818 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07692 0.00000 0.00000 0.84615 0.00000 0.07692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.07143 0.71429 0.07143 0.14286 # MATR ### node 4 type 3 5 -1 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01493 0.94030 0.01493 0.01493 0.00000 0.01493 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.63636 0.04545 0.21212 0.10606 # MATR ### node 5 type 1 6 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.05128 # MATP 0.01282 0.01282 0.03846 0.01282 # MATP 0.01282 0.74359 0.01282 0.01282 # MATP 0.01282 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 6 type 1 7 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.01282 0.39744 0.01282 # MATP 0.01282 0.39744 0.01282 0.01282 # MATP 0.03846 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 7 type 1 8 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.05128 # MATP 0.01282 0.01282 0.33333 0.01282 # MATP 0.01282 0.25641 0.01282 0.17949 # MATP 0.03846 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 8 type 1 9 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.05128 # MATP 0.01282 0.01282 0.41026 0.01282 # MATP 0.01282 0.29487 0.01282 0.02564 # MATP 0.06410 0.01282 0.02564 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 9 type 1 10 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.06410 # MATP 0.01282 0.01282 0.48718 0.01282 # MATP 0.01282 0.16667 0.01282 0.01282 # MATP 0.08974 0.01282 0.05128 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 10 type 1 11 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.05128 # MATP 0.01282 0.01282 0.32051 0.01282 # MATP 0.01282 0.38462 0.01282 0.01282 # MATP 0.05128 0.01282 0.05128 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 11 type 1 12 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.01515 0.00000 0.95455 0.00000 0.01515 0.01515 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.14103 # MATP 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.61538 0.01282 0.05128 # MATP 0.03846 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 12 type 2 13 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03077 0.00000 0.95385 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.03030 0.01515 0.93939 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 2 14 -1 0.66667 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.96825 0.00000 0.00000 0.00000 0.03175 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.66667 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.52308 0.06154 0.38462 0.03077 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 14 type 0 15 28 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 15 type 4 16 -1 0.01515 0.95455 0.01515 0.01515 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 16 type 1 17 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.01282 0.07692 0.01282 # MATP 0.01282 0.53846 0.01282 0.21795 # MATP 0.01282 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 17 type 1 18 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.01282 0.50000 0.01282 # MATP 0.01282 0.10256 0.01282 0.01282 # MATP 0.23077 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 18 type 1 19 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.03846 0.01282 0.01282 # MATP 0.01282 0.01282 0.28205 0.01282 # MATP 0.01282 0.15385 0.01282 0.02564 # MATP 0.35897 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 19 type 1 20 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.01515 0.00000 0.95455 0.00000 0.01515 0.01515 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.02564 0.02564 0.01282 0.03846 # MATP 0.01282 0.02564 0.30769 0.01282 # MATP 0.11538 0.01282 0.01282 0.01282 # MATP 0.02564 0.02564 0.16667 0.16667 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 20 type 2 21 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.95455 0.01515 0.01515 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.95455 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.18462 0.00000 0.80000 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07576 0.54545 0.03030 0.34848 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.07143 0.00000 0.85714 0.00000 0.07143 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01852 0.00000 0.16667 0.00000 0.81481 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02174 0.00000 0.95652 0.00000 0.02174 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.17021 0.23404 0.02128 0.57447 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07273 0.67273 0.01818 0.23636 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 25 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.95455 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 2 26 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.95455 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.50769 0.00000 0.47692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01961 0.00000 0.60784 0.00000 0.37255 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.46154 0.01923 0.26923 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.12121 0.25758 0.13636 0.48485 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.98438 0.00000 0.00000 0.00000 0.01562 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.92424 0.01515 0.04545 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 5 29 -1 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 2 30 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.98438 0.00000 0.00000 0.00000 0.01562 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10606 0.03030 0.77273 0.09091 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 30 type 0 31 44 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 31 type 4 32 -1 0.01515 0.95455 0.01515 0.01515 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 32 type 1 33 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.08974 # MATP 0.01282 0.01282 0.52564 0.01282 # MATP 0.01282 0.07692 0.01282 0.01282 # MATP 0.08974 0.01282 0.07692 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 33 type 1 34 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.12821 # MATP 0.01282 0.01282 0.44872 0.01282 # MATP 0.01282 0.07692 0.01282 0.05128 # MATP 0.14103 0.01282 0.02564 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 34 type 1 35 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.05128 # MATP 0.01282 0.01282 0.12821 0.01282 # MATP 0.01282 0.52564 0.01282 0.01282 # MATP 0.14103 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 35 type 1 36 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.01282 0.17949 0.01282 # MATP 0.01282 0.62821 0.01282 0.02564 # MATP 0.01282 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 36 type 1 37 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.01515 0.00000 0.95455 0.00000 0.01515 0.01515 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.24359 # MATP 0.01282 0.01282 0.33333 0.01282 # MATP 0.01282 0.23077 0.01282 0.02564 # MATP 0.02564 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.75758 0.01515 0.21212 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.01515 0.95455 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.28788 0.27273 0.42424 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 41 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.27273 0.15152 0.31818 0.25758 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 2 42 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16667 0.34848 0.18182 0.30303 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.87692 0.00000 0.10769 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00877 0.00000 0.06140 0.00000 0.92982 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.26957 0.19130 0.29565 0.24348 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.54545 0.01515 0.42424 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.98438 0.00000 0.00000 0.00000 0.01562 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.80303 0.13636 0.03030 0.03030 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 5 45 -1 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 2 46 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.15385 0.00000 0.83077 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.39394 0.18182 0.06061 0.36364 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 2 47 -1 0.90909 0.00000 0.00000 0.00000 0.09091 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.98182 0.00000 0.00000 0.00000 0.01818 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10526 0.07018 0.70175 0.12281 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 47 type 0 48 60 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 48 type 4 49 -1 0.81818 0.15152 0.01515 0.01515 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 49 type 1 50 -1 0.91525 0.01695 0.01695 0.01695 0.01695 0.01695 0.06667 0.66667 0.06667 0.06667 0.06667 0.06667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04000 0.04000 0.04000 0.04000 # MATP 0.04000 0.04000 0.12000 0.04000 # MATP 0.04000 0.28000 0.04000 0.08000 # MATP 0.04000 0.04000 0.04000 0.04000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 50 type 1 51 -1 0.91525 0.01695 0.01695 0.01695 0.01695 0.01695 0.06667 0.66667 0.06667 0.06667 0.06667 0.06667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04000 0.04000 0.04000 0.08000 # MATP 0.04000 0.04000 0.16000 0.04000 # MATP 0.04000 0.24000 0.04000 0.04000 # MATP 0.04000 0.04000 0.04000 0.04000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 51 type 1 52 -1 0.91525 0.01695 0.01695 0.01695 0.01695 0.01695 0.53333 0.20000 0.06667 0.06667 0.06667 0.06667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04000 0.04000 0.04000 0.08000 # MATP 0.04000 0.04000 0.28000 0.04000 # MATP 0.04000 0.04000 0.04000 0.04000 # MATP 0.08000 0.04000 0.08000 0.04000 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 52 type 1 53 -1 0.92424 0.01515 0.01515 0.01515 0.01515 0.01515 0.12500 0.37500 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.05556 0.05556 0.05556 0.05556 # MATP 0.05556 0.05556 0.11111 0.05556 # MATP 0.05556 0.05556 0.05556 0.05556 # MATP 0.11111 0.05556 0.05556 0.05556 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 53 type 1 54 -1 0.92424 0.01515 0.01515 0.01515 0.01515 0.01515 0.37500 0.12500 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.05556 0.05556 0.05556 0.05556 # MATP 0.05556 0.05556 0.16667 0.05556 # MATP 0.05556 0.05556 0.05556 0.05556 # MATP 0.05556 0.05556 0.05556 0.05556 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 54 type 1 55 -1 0.92647 0.01471 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.06250 0.06250 0.06250 0.06250 # MATP 0.06250 0.06250 0.06250 0.06250 # MATP 0.06250 0.06250 0.06250 0.06250 # MATP 0.06250 0.06250 0.06250 0.06250 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 55 type 1 56 -1 0.81818 0.00000 0.10606 0.00000 0.01515 0.06061 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.16667 0.00000 0.66667 0.00000 0.00000 0.16667 0.25000 0.25000 0.25000 0.25000 # INSL 0.42857 0.14286 0.28571 0.14286 # INSR 0.06250 0.06250 0.06250 0.06250 # MATP 0.06250 0.06250 0.06250 0.06250 # MATP 0.06250 0.06250 0.06250 0.06250 # MATP 0.06250 0.06250 0.06250 0.06250 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 56 type 2 57 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.07692 0.69231 0.15385 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 2 58 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.08333 0.00000 0.83333 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07692 0.15385 0.07692 0.69231 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.96429 0.00000 0.01786 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.00000 0.75000 0.00000 0.08333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.53846 0.15385 0.07692 0.23077 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 -1 -1 0.98214 0.00000 0.00000 0.00000 0.01786 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.90000 0.00000 0.00000 0.00000 0.10000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.25000 0.16667 0.50000 0.08333 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 5 61 -1 0.03077 0.00000 0.95385 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 61 type 2 62 -1 0.25000 0.00000 0.25000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01562 0.00000 0.25000 0.00000 0.73438 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01961 0.00000 0.94118 0.00000 0.03922 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03846 0.28846 0.07692 0.59615 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.36923 0.03077 0.47692 0.12308 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 62 type 2 63 -1 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01493 0.94030 0.01493 0.01493 0.01493 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.95455 0.01515 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 63 type 1 64 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.06410 # MATP 0.01282 0.01282 0.32051 0.01282 # MATP 0.01282 0.30769 0.01282 0.06410 # MATP 0.03846 0.01282 0.07692 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 64 type 1 65 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.07692 # MATP 0.01282 0.01282 0.46154 0.01282 # MATP 0.01282 0.11538 0.01282 0.05128 # MATP 0.14103 0.01282 0.02564 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 65 type 1 66 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.05128 # MATP 0.01282 0.01282 0.10256 0.01282 # MATP 0.01282 0.64103 0.01282 0.01282 # MATP 0.02564 0.01282 0.03846 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 66 type 1 67 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.01471 0.92647 0.01471 0.01471 0.01471 0.01471 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.03846 # MATP 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.76923 0.01282 0.01282 # MATP 0.02564 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 67 type 1 68 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.01515 0.00000 0.95455 0.00000 0.01515 0.01515 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.01282 0.01282 0.01282 # MATP 0.01282 0.80769 0.01282 0.01282 # MATP 0.01282 0.01282 0.01282 0.01282 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.01515 0.01515 0.95455 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.03030 0.01515 0.93939 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.93939 0.03030 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 72 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.59091 0.01515 0.37879 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 72 type 2 73 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.95455 0.01515 0.01515 0.01515 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 73 type 2 74 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01538 0.00000 0.96923 0.00000 0.01538 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.84848 0.01515 0.09091 0.04545 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 74 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.98438 0.00000 0.00000 0.00000 0.01562 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01515 0.06061 0.01515 0.90909 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-bact-iso.i1i0000644000543100007160000000313513054776762020252 0ustar pchanlowelabɳ !$NoTRNAinf-bact-isobact-Alabact-Argbact-Asn'bact-Aspbact-CysO<bact-Glnu!bact-Glubact-Glybact-Hisbact-IleBbact-Ile2Obact-Leubact-Lys|bact-Met bact-Phebact-Pro 6bact-SeC Ybact-Ser bact-Thr 1%bact-Trp bact-Tyr Obact-Val bact-fMetbbact-Ala-r2-022416bact-Alabact-Arg-r2-022416bact-Argbact-Asn-r2-022416bact-Asnbact-Asp-r2-022416bact-Aspbact-Cys-r2-022416bact-Cysbact-Gln-r2-022416bact-Glnbact-Glu-r2-022416bact-Glubact-Gly-r2-022416bact-Glybact-His-r2-022416bact-Hisbact-Ile-r2-022416bact-Ilebact-Ile2-r2-022416bact-Ile2bact-Leu-r2-022416bact-Leubact-Lys-r2-022416bact-Lysbact-Met-r2-022416bact-Metbact-Phe-r2-022416bact-Phebact-Pro-r2-022416bact-Probact-SeC-043016bact-SeCbact-Ser-r2-022416bact-Serbact-Thr-r2-022416bact-Thrbact-Trp-r2-022416bact-Trpbact-Tyr-r2-022416bact-Tyrbact-Val-r2-022416bact-Valbact-fMet-r2-022416bact-fMettRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert.i1p0000644000543100007160000120176413054731304020476 0ustar pchanlowelabZAla =======++====++++++++====+=====++***++=====++=======++++=======++=====+++++++============+ (((((((,,<<<<________>>>>,<<<<<_______>>>>>,,<<<<<<<____>>>>>>>,,<<<<<_______>>>>>))))))): 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V>W? ?;v?aX>r?>i?>?a?x?Q?1?o?JO?kL?, ?:?k ??"? ?>7=+X>M>n?N>y?A>G?Q>y? >0>ر=|y?>->5>eN>?w>>+?h>~z?̇<>ހR?5>S?X2?>>(?u'?4?Fv=?e?=y>Wde?>>)?aV?L}? >׈?=m>E?.:j?I?T)?>/!?,?jQ?>q?>T?=l?"G?~S?x ?i??3l?H>>Zq?$f?Q>|VE=w>?~{?@>x?^X>?Bj>>x?y=L`>>x?K=hY> A?b]>9>[>A?FF*?>k?AG>)p?wO>e>? g?s;f?(?ѣ>6?> ?+L=?W? m?>B9?D>7R?$H?'k?}M? ?iU?>lA?0?R?[/?"?L>>?Z?b6>{?r&>_"?}0?e?2???^?%?Hʁ>/?r?oZ>X+>fH?2?E>ǂ?5>ѐ>>Ƃ?>+>i5!>+?wv>k>+>6=>Ɂ>E??z>C?z>?Cl? >.Q"??S?ځ0?g? p?†1?J?(?HL?d>G??Ӥ'?@[ ?Zf??`>Y?+*/?> ׶>}P?]>?+>%nL?.>|O?T>=4?>-[p?(>b???pIS?S?(?o9?K?BN?R ?>S>]?i4? >8`>M ?#}?z:>1?Z>?>1?',>>J=E? O@>aM>>H>h>F>>??5;$~?5;$~?5;$~?OǀOǀOǀOǀOǀO?tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-SerTGA.cm0000644000543100007160000017245612573631164021767 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Ser-TGA STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:55:44 2015 COM [1] cmbuild --hand --enone Ser-TGA_model.cm aligntRNAdb-Ser-TGA.sto COM [2] cmcalibrate --seed 208 Ser-TGA_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 2834783034 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4244 0.71874 ECMLC 0.65647 -7.27081 2.48786 1600000 726742 0.001651 ECMGC 0.36069 -43.00042 -29.19800 1600000 58098 0.006885 ECMLI 0.66354 -6.96057 2.64600 1600000 703929 0.001705 ECMGI 0.37389 -38.78759 -25.58818 1600000 55640 0.007189 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -13.075 -14.320 -0.004 -8.542 IL 1 1 2 1 4 14 39 99 117 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 40 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 93 - G - + MR 3 2 3 5 5 19 45 97 116 -13.123 -0.023 -12.938 -5.987 -14.042 0.939 -8.507 1.011 -3.936 D 4 2 3 5 5 11 35 95 114 -6.109 -1.464 -3.735 -1.197 -3.161 IR 5 5 3 5 5 14 38 98 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 92 G U = = MP 6 5 3 10 6 21 45 96 115 -14.052 -13.992 -0.001 -12.768 -13.048 -13.443 -10.073 -8.733 -10.268 2.043 -12.409 -13.564 -7.867 -10.311 -9.828 0.857 -10.498 3.329 -7.792 -11.573 -9.698 -8.866 ML 7 5 3 10 6 12 37 95 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 38 94 113 -9.858 -8.587 -2.767 -8.565 -0.256 -6.779 -3.098 -2.839 -3.880 1.878 D 9 5 3 10 6 9 33 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 13 37 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 13 38 96 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 91 A U = = MP 12 11 6 16 6 20 43 94 113 -14.056 -13.995 -0.001 -12.771 -13.051 -13.446 -10.076 -8.736 -10.271 3.950 -12.407 -13.564 -7.866 -10.313 -9.831 -5.398 -10.501 -0.988 -7.793 -11.576 -9.697 -8.870 ML 13 11 6 16 6 12 36 93 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 38 93 112 -9.702 -8.431 -0.157 -8.409 -3.543 -6.623 -3.448 1.882 -4.213 -2.570 D 15 11 6 16 6 9 33 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 13 37 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 13 37 94 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 90 G C = = MP 18 17 6 22 6 18 41 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.615 -8.649 -12.867 1.022 -13.439 -9.960 -7.932 -12.694 -9.987 3.801 -10.231 -6.498 -8.237 -10.369 -10.294 -11.605 ML 19 17 6 22 6 12 36 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 36 91 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 32 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 13 37 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 13 37 92 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 89 A U = = MP 24 23 6 28 6 16 39 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.126 -8.804 -9.488 3.976 -12.377 -13.417 -7.934 -9.427 -9.891 -5.464 -10.548 -2.213 -7.863 -11.597 -9.747 -8.561 ML 25 23 6 28 6 12 35 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 35 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 32 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 12 36 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 36 90 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 88 A U = = MP 30 29 6 34 6 14 37 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.759 -12.435 -13.590 -7.893 -10.336 -9.854 -0.741 -10.524 0.882 -7.817 -11.599 -9.723 -8.892 ML 31 29 6 34 6 11 35 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 35 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 32 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 36 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 12 36 88 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 87 A U = = MP 36 35 6 40 6 12 35 86 105 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.926 -12.434 -13.590 -7.893 -10.336 -9.854 -1.102 -10.524 -1.680 -7.817 -11.599 -9.723 -8.892 ML 37 35 6 40 6 11 34 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 34 86 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 32 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 11 34 86 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 11 34 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 86 G C = = MP 42 41 6 46 4 10 33 84 103 -13.280 -13.487 -1.749 -0.510 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 43 41 6 46 4 10 33 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 33 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 31 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 34 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 34 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 10 33 83 102 -12.446 -0.228 -2.778 -1.099 -5.712 -6.626 1.809 D 49 47 6 50 3 8 31 81 100 -15.100 -2.738 -0.234 IL 50 50 3 50 3 10 33 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - c - + - ML 51 50 3 53 2 9 32 82 101 -13.364 -0.000 0.064 0.500 -1.635 0.285 D 52 50 3 53 2 8 31 81 100 -13.238 -0.000 IL 53 53 3 53 2 9 32 83 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 31 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 43 62 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 43 62 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 43 -0.046 -12.197 -5.013 -12.244 [ MATP 15 ] 10 26 a g = = MP 58 57 1 62 6 2 3 24 43 -14.033 -13.973 -0.001 -12.749 -13.029 -13.424 2.056 -3.128 2.247 -0.931 -2.216 -6.419 0.760 -3.899 -1.364 -1.361 -3.304 -3.023 0.127 -5.709 1.189 -3.738 ML 59 57 1 62 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -10.575 -9.304 -0.843 -9.282 -1.207 -7.495 0.596 -0.823 -0.285 0.141 D 61 57 1 62 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 3 22 41 -14.059 -13.999 -0.006 -12.775 -8.129 -13.450 -10.882 -11.054 -3.028 0.578 -8.686 -10.492 3.372 -9.579 -10.364 -7.103 -10.527 -9.226 1.235 -10.767 0.729 -9.156 ML 65 63 6 68 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -9.484 -8.213 -0.184 -8.192 -3.325 -6.405 0.284 -1.028 -0.094 0.438 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 A U = = MP 70 69 6 74 6 2 3 20 39 -14.073 -14.012 -0.001 -12.789 -13.069 -13.464 -10.094 -1.850 -10.289 3.765 -12.429 -13.584 -7.887 -10.331 -9.849 -1.802 -10.519 -2.108 0.564 -11.594 -9.718 -3.024 ML 71 69 6 74 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -8.148 -6.877 -2.786 -6.855 -0.314 -5.069 -0.815 1.235 -1.587 -0.425 D 73 69 6 74 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U A = = MP 76 75 6 80 4 2 2 18 37 -13.275 -13.482 -0.015 -6.587 0.180 -8.988 -9.731 0.375 -8.976 -10.836 -2.021 -9.355 1.272 -2.149 -10.024 -2.916 3.349 -10.286 -1.513 -8.373 ML 77 75 6 80 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -6.087 -5.116 -0.486 -2.044 1.468 -1.569 -1.280 -1.044 D 79 75 6 80 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 16 34 -14.176 -0.252 -2.640 1.822 -7.699 -1.899 -2.378 D 83 81 6 84 3 0 0 16 35 -9.171 -4.684 -0.060 IL 84 84 3 84 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - + - ML 85 84 3 87 3 1 1 15 34 -13.923 -0.333 -2.277 0.430 -3.367 1.293 -3.247 D 86 84 3 87 3 0 0 13 32 -13.055 -8.568 -0.004 IL 87 87 3 87 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 14 33 -13.590 -6.694 -0.014 -0.716 -6.215 -2.354 1.670 D 89 87 3 90 3 0 0 13 31 -14.059 -9.572 -0.002 IL 90 90 3 90 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - a - + - ML 91 90 3 93 3 1 1 17 35 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 92 90 3 93 3 0 0 12 30 -15.602 -0.026 -5.811 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - G - + - ML 94 93 3 96 3 1 1 11 30 -14.166 -0.000 -12.820 -4.436 -10.479 1.982 -9.458 D 95 93 3 96 3 0 0 13 31 -9.829 -0.915 -1.093 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - + - ML 97 96 3 99 3 1 1 10 28 -14.179 -0.122 -3.625 -3.875 -2.881 1.924 -8.843 D 98 96 3 99 3 0 0 12 31 -8.813 -4.326 -0.077 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 14 -5.307 -0.122 -4.161 -2.694 -1.056 -3.556 1.713 D 101 99 3 102 3 0 0 4 12 -12.124 -0.016 -6.516 IL 102 102 3 102 3 1 1 8 15 -3.762 -0.128 -6.462 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 -2.431 -3.594 -4.778 1.886 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 28 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - g - + - ML 109 108 2 111 5 1 1 27 46 -3.448 -0.151 -12.941 -7.031 -14.045 -0.577 -1.833 0.814 0.368 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -6.562 -0.024 -8.241 -10.073 -9.347 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 g u = = MP 112 111 3 116 6 2 2 26 45 -14.067 -14.006 -0.001 -12.783 -13.063 -13.458 -10.087 -3.266 -10.283 2.477 -12.423 -13.566 -7.880 -10.326 -9.843 1.772 -10.512 2.786 -7.805 -11.585 -9.711 -8.881 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 43 -8.869 -7.598 -3.507 -7.576 -0.182 -5.790 -1.634 -1.605 -2.375 1.658 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 U A = = MP 118 117 6 122 6 2 2 24 43 -14.067 -14.006 -0.001 -12.783 -13.063 -13.458 -11.098 -11.380 -10.416 -7.616 -3.574 -10.560 0.266 -9.681 -10.519 -7.588 -10.639 -9.784 3.297 -10.932 2.196 -1.816 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 42 -8.869 -7.598 -0.292 -7.576 -2.710 -5.790 1.751 -2.532 -2.148 -2.091 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.103 -11.360 -10.426 -7.599 -8.783 -10.576 -4.495 -9.695 -10.527 -7.578 -10.650 -9.722 3.857 -10.946 0.313 -2.318 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.907 -8.639 -13.833 -6.072 -13.592 -9.835 -7.937 -13.448 -10.001 3.842 -10.205 0.706 -8.287 -10.290 -10.366 -12.751 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.481 -8.655 -12.536 0.914 -13.366 -10.031 -7.929 -12.414 -9.979 3.806 -10.245 -3.137 -8.212 -10.412 -10.258 -11.239 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 48 67 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 2 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - U - + - ML 166 165 2 168 3 1 2 48 67 -14.190 -0.297 -2.428 -1.708 -1.268 -2.262 1.618 D 167 165 2 168 3 0 0 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - + - ML 169 168 3 171 2 1 1 47 66 -14.546 -0.000 -0.382 -1.718 -0.709 1.212 D 170 168 3 171 2 0 0 46 65 -11.575 -0.000 IL 171 171 3 171 2 1 1 49 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -13.489 -13.170 -4.609 -0.061 IL 214 214 5 214 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - + - ML 216 215 6 218 3 1 1 14 33 -9.777 -0.006 -8.431 -4.583 -4.177 -5.394 1.956 D 217 215 6 218 3 0 0 9 27 -15.542 -11.055 -0.001 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - + - ML 219 218 3 221 3 1 1 13 32 -9.777 -0.006 -8.431 -4.583 -4.177 -5.394 1.956 D 220 218 3 221 3 0 0 8 26 -15.542 -11.055 -0.001 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - + - ML 222 221 3 224 3 1 1 12 30 -9.777 -2.881 -0.212 -4.583 -4.177 -5.394 1.956 D 223 221 3 224 3 0 0 7 25 -15.542 -11.055 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 29 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - + - ML 231 230 2 233 3 1 1 29 47 -2.595 -0.261 -12.844 -1.729 -2.882 -0.955 1.607 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 28 47 -6.337 -0.021 -9.037 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - A - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.588 -7.340 -2.038 -0.427 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 85 G C = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 84 G U = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 2.169 -12.435 -13.590 -7.893 -10.336 -9.854 -0.063 -10.524 3.396 -7.817 -11.599 -9.723 -8.892 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 83 G U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 1.705 -12.435 -13.590 -7.893 -10.336 -9.854 -0.476 -10.524 3.585 -7.817 -11.599 -9.723 -8.892 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 82 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.856 -8.641 -13.627 -2.106 -13.568 -9.855 -7.936 -13.297 -9.998 3.965 -10.209 -2.844 -8.279 -10.302 -10.355 -12.493 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 81 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - U - + - ML 267 266 6 269 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - C - + - ML 273 272 3 275 3 1 1 13 32 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - G - + - ML 276 275 3 278 3 1 1 12 30 -14.190 -0.000 -12.844 -1.069 -10.213 1.816 -9.330 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 78 - A - + - ML 279 278 3 281 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 15 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 79 - U - + - ML 282 281 3 284 3 1 1 9 27 -14.190 -0.000 -12.844 -1.377 -0.839 -4.600 1.592 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 80 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.179 -8.495 -9.656 1.978 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Ser-TGA LENG 90 MAXL 176 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:55:44 2015 COM [1] cmbuild --hand --enone Ser-TGA_model.cm aligntRNAdb-Ser-TGA.sto NSEQ 282 EFFN 3.360626 CKSUM 2834783034 STATS LOCAL MSV -9.0938 0.71874 STATS LOCAL VITERBI -9.7944 0.71874 STATS LOCAL FORWARD -3.4061 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44624 1.57860 1.32641 1.22808 1.38629 1.38629 1.38629 1.38629 0.04368 4.16887 3.60213 1.46634 0.26236 0.00000 * 1 1.30038 2.98657 0.48506 2.78954 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03181 4.15701 4.15701 1.46634 0.26236 1.23833 0.34230 2 0.24009 3.41907 1.96124 3.21839 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03176 4.15842 4.15842 1.46634 0.26236 0.78675 0.60756 3 2.01336 3.17826 0.25142 3.05538 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 4 0.21087 3.46958 2.10651 3.28805 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 5 0.45372 3.08297 1.33737 2.87565 5 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 6 0.27863 3.32327 1.81333 3.12280 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 7 2.86719 3.66587 0.11618 3.60278 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.68661 4.16887 0.73136 1.46634 0.26236 1.09861 0.40547 8 1.52464 1.85686 2.12385 0.68010 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.11863 3.54192 2.49009 1.46634 0.26236 1.79463 0.18175 9 1.26993 1.40481 1.87209 1.13965 9 u + - , 1.38629 1.38629 1.38629 1.38629 0.07138 3.61557 3.17029 1.46634 0.26236 0.09530 2.39796 10 1.25944 1.49648 1.60269 1.23472 10 u = - < 1.38629 1.38629 1.38629 1.38629 0.03210 4.14807 4.14807 1.46634 0.26236 0.89486 0.52537 11 1.96369 0.86682 1.95228 1.21259 11 c = - < 1.38629 1.38629 1.38629 1.38629 0.03411 4.16016 4.02107 1.46634 0.26236 0.82474 0.57687 12 0.72090 2.19133 1.41674 1.83625 12 a = - < 1.38629 1.38629 1.38629 1.38629 0.03150 4.16656 4.16656 1.46634 0.26236 1.14716 0.38205 13 1.60512 1.53926 1.52268 1.00384 13 u = - < 1.38629 1.38629 1.38629 1.38629 0.03846 4.16656 3.80664 1.46634 0.26236 1.00807 0.45401 14 0.34228 2.65928 2.22124 2.19485 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.14761 4.16215 2.10654 1.46634 0.26236 1.23350 0.34428 15 1.13984 2.30343 0.84048 1.90575 15 g + - _ 1.38629 1.38629 1.38629 1.38629 0.17791 4.05000 1.92715 1.46634 0.26236 2.32677 0.10271 16 1.56069 2.01662 2.14809 0.61582 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.91715 3.91288 0.54411 1.46634 0.26236 2.86789 0.05850 17 1.13112 1.65303 1.51838 1.32128 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.06142 2.82058 18 2.90838 3.91006 0.11095 3.49278 18 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03179 4.15769 4.15769 1.46634 0.26236 0.98069 0.47009 19 2.36662 2.97192 0.22823 2.82932 19 G + - _ 1.38629 1.38629 1.38629 1.38629 0.08851 4.16385 2.67142 1.46634 0.26236 1.20122 0.35786 20 1.96824 1.83613 2.48519 0.48199 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.08875 3.42242 2.95082 0.81568 0.58400 0.35003 1.21965 21 2.12894 2.26256 2.72522 0.34049 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03254 4.13451 4.13451 1.46634 0.26236 0.48752 0.95230 22 1.04363 1.82286 1.32910 1.50711 23 a = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 23 2.02404 1.58159 2.00235 0.64015 24 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 24 1.50448 2.12231 0.71008 1.79270 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 25 1.32762 1.78552 1.08736 1.46933 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 26 1.39441 1.92706 1.18983 1.19676 27 g + - , 1.38629 1.38629 1.38629 1.38629 0.10186 2.57231 3.88809 0.36528 1.18418 1.09861 0.40547 27 1.22407 2.67821 0.58724 2.50807 29 G = - < 1.38629 1.38629 1.38629 1.38629 0.03159 4.16385 4.16385 1.46634 0.26236 1.20122 0.35786 28 2.33085 1.39978 2.12680 0.62191 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03159 4.16385 4.16385 1.46634 0.26236 0.92043 0.50807 29 3.08420 2.08092 2.86199 0.25843 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 30 2.53542 3.36569 0.16605 3.23829 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 31 2.03286 3.18230 0.24803 3.05304 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 32 3.36924 0.12080 3.93367 2.81676 34 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 33 3.02590 2.92115 3.55686 0.14031 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 34 3.02590 2.92115 3.55686 0.14031 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 35 3.13350 4.06348 0.09126 3.63205 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 36 0.09732 3.67467 3.35850 3.42369 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 37 0.09732 3.67467 3.35850 3.42369 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 38 0.09732 3.67467 3.35850 3.42369 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 39 3.27191 0.28990 3.00265 1.80743 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 40 3.44363 0.24148 3.19009 1.95603 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 41 0.32660 3.02910 1.77815 2.79168 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 42 0.95152 2.29855 0.95077 2.06359 44 g = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 43 2.73455 1.11462 2.47962 0.64767 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 44 1.79580 1.85646 2.27791 0.55290 46 U + - , 1.38629 1.38629 1.38629 1.38629 0.16756 4.16887 1.97468 1.46634 0.26236 1.09861 0.40547 45 1.39275 1.83187 1.79657 0.85419 47 u + - , 1.38629 1.38629 1.38629 1.38629 1.04151 4.03724 0.46294 1.46634 0.26236 2.39541 0.09556 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 47 1.80332 1.30584 1.07717 1.49724 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 48 1.80113 1.30651 1.07799 1.49681 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 49 1.80020 1.30679 1.07834 1.49662 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 50 1.79986 1.30690 1.07846 1.49655 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 51 1.79982 1.30691 1.07848 1.49654 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 52 1.79992 1.30688 1.07844 1.49656 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.81537 0.06175 53 1.33586 1.65304 1.74706 0.99071 55 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08803 3.16687 3.16687 1.46634 0.26236 3.78213 0.02304 54 1.33586 1.65304 1.74706 0.99071 56 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08803 3.16687 3.16687 1.46634 0.26236 3.78213 0.02304 55 1.33586 1.65304 1.74706 0.99071 57 u + - _ 1.38629 1.38629 1.38629 1.38629 0.17114 3.16687 2.16141 1.46634 0.26236 3.78213 0.02304 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 57 1.73113 1.21983 1.16179 1.53847 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 58 1.73099 1.21989 1.16184 1.53843 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 59 1.73092 1.21992 1.16186 1.53841 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 60 1.73098 1.21990 1.16184 1.53843 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 61 1.73128 1.21977 1.16173 1.53851 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 62 1.73201 1.21946 1.16146 1.53873 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04481 3.12769 64 1.74551 2.05583 1.99193 0.57799 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.15180 2.07651 4.16887 0.23080 1.57940 1.09861 0.40547 65 0.57946 2.28417 2.07785 1.54768 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 66 2.87767 3.68043 0.11450 3.62258 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 67 1.23021 3.12568 0.49514 2.91182 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 68 1.38651 3.23003 0.41408 3.00473 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 69 2.68483 3.60592 0.13399 3.50641 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 70 2.87024 3.67010 0.11569 3.60851 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 71 3.02590 2.92115 3.55686 0.14031 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 72 3.02590 2.92115 3.55686 0.14031 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 73 3.36924 0.12080 3.93367 2.81676 76 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 74 1.92824 3.22330 0.27919 2.84079 77 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 75 0.09732 3.67467 3.35850 3.42369 78 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 76 1.78021 1.75528 2.46553 0.55587 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 77 2.59954 2.66013 3.20202 0.20448 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 78 3.78464 0.13890 3.51444 2.56129 81 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 79 3.69131 0.16326 3.44293 2.36746 82 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 80 3.20352 1.83754 3.01695 0.28605 83 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 81 3.11657 1.72298 2.91499 0.32441 84 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 82 3.79115 0.13852 3.51757 2.56250 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 83 3.77379 0.13955 3.50920 2.55926 86 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 84 3.32216 2.15750 3.11719 0.21812 87 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 85 3.07981 1.86407 2.87523 0.29761 88 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 86 3.48096 2.49519 3.26267 0.16434 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 87 3.26186 0.29121 2.99420 1.80637 90 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 88 3.39605 2.38696 3.20812 0.18134 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 89 2.97723 1.48173 2.77360 0.41645 92 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03288 4.16887 4.08212 1.46634 0.26236 1.09861 0.40547 90 0.88715 2.55964 0.94231 2.11104 93 a + - : 1.38629 1.38629 1.38629 1.38629 0.01586 4.15186 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-LeuTAG.cm0000644000543100007160000017260212573631651021471 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Leu-TAG-2nd-align STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:55 2015 COM [1] cmbuild --hand --enone Leu-TAG-final-vert.cm ../Leu-TAG-2nd-align.sto COM [2] cmcalibrate --seed 208 Leu-TAG-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 3929892251 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.3260 0.71873 ECMLC 0.63125 -7.30419 2.38044 1600000 542240 0.002213 ECMGC 0.31002 -53.68567 -38.11610 1600000 49932 0.008011 ECMLI 0.60672 -7.30405 2.66757 1600000 508909 0.002358 ECMGI 0.31292 -49.99297 -34.68609 1600000 48113 0.008314 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 118 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 18 40 101 120 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 42 102 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - U - + MR 3 2 3 5 5 23 50 100 119 -15.061 -0.004 -14.876 -8.609 -15.980 0.671 -5.005 -4.422 1.220 D 4 2 3 5 5 15 36 99 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 40 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 G C = = MP 6 5 3 10 6 25 49 99 118 -15.991 -15.930 -0.000 -14.707 -14.987 -15.382 -3.247 -3.121 -11.809 2.645 -13.523 -13.469 -8.762 -12.035 -11.577 3.122 -12.136 -1.345 -1.248 -12.413 -10.697 -10.519 ML 7 5 3 10 6 17 38 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 40 98 116 -9.141 -7.870 -0.238 -7.848 -2.982 -6.061 1.818 -2.947 -2.522 -2.548 D 9 5 3 10 6 13 35 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 39 99 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 C G = = MP 12 11 6 16 6 24 47 97 116 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -2.795 -3.461 -12.508 3.948 -11.630 -12.468 -9.537 -4.020 -11.733 -2.064 -12.881 -5.378 -11.270 ML 13 11 6 16 6 17 38 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 38 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 35 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 39 97 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 39 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 U A = = MP 18 17 6 22 6 23 45 95 114 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.435 -2.073 -12.508 0.561 -11.630 -12.468 -9.537 -12.588 -11.733 3.816 -12.881 -6.220 -11.270 ML 19 17 6 22 6 17 38 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 38 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 35 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 39 95 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 39 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 U A = = MP 24 23 6 28 6 21 43 93 112 -6.389 -15.934 -0.017 -14.710 -14.990 -15.385 -10.030 -3.332 -10.068 1.496 -2.564 -0.106 -1.384 -0.302 -9.970 -2.130 -10.490 -7.556 3.206 -0.953 -1.826 -0.931 ML 25 23 6 28 6 16 37 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 37 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 34 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 42 92 111 -6.471 -6.734 -0.040 -8.389 -9.165 -8.826 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 38 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 95 U A = = MP 30 29 6 34 6 19 41 91 109 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.469 -10.181 -3.636 -4.686 -2.549 -11.262 2.709 -3.133 -10.316 -2.318 -10.816 -7.757 3.046 -5.114 -1.005 -3.959 ML 31 29 6 34 6 16 37 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 37 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 38 91 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 38 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 94 U A = = MP 36 35 6 40 6 17 39 89 107 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.175 -12.957 -12.223 -2.389 -3.581 -12.437 -0.128 -11.517 -3.323 -3.794 -12.464 -11.099 3.766 -12.694 -0.029 -11.084 ML 37 35 6 40 6 15 37 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 36 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 37 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 37 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 93 A U = = MP 42 41 6 46 4 15 37 87 105 -15.218 -15.425 -0.014 -6.684 -12.037 -10.697 -4.013 3.589 -14.373 -15.528 -9.831 -12.275 -11.792 1.829 -12.462 -1.889 -9.755 -13.537 -11.661 -3.781 ML 43 41 6 46 4 14 36 88 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 35 87 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 34 86 106 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 37 89 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 36 88 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 13 36 85 103 -16.113 -0.000 -14.767 1.822 -4.258 -3.099 -1.759 D 49 47 6 50 3 11 34 83 102 -10.907 -3.285 -0.157 IL 50 50 3 50 3 13 36 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 12 35 84 102 -16.770 -0.000 1.957 -11.122 -4.082 -4.111 D 52 50 3 53 2 11 34 83 101 -9.707 -0.002 IL 53 53 3 53 2 12 35 85 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 34 83 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 2 15 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 2 15 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 4 24 42 -0.001 -14.122 -10.950 -14.170 [ MATP 15 ] 11 29 G C = = MP 58 57 1 62 6 2 6 24 42 -15.994 -15.933 -0.000 -14.710 -14.990 -15.385 -2.843 -10.566 -14.855 -1.678 -15.373 -11.865 -9.850 -14.671 -11.905 3.958 -12.146 -8.421 -10.160 -12.278 -12.219 -13.603 ML 59 57 1 62 6 1 2 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 25 43 -7.642 -6.371 -0.809 -6.350 -1.483 -4.563 -0.283 0.768 -1.006 -0.032 D 61 57 1 62 6 0 1 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 G C = = MP 64 63 6 68 6 2 6 22 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.868 -2.704 -15.950 -2.352 -15.531 -11.735 -9.853 -15.506 -3.461 3.959 -12.117 -8.475 -10.210 -12.195 -12.292 -14.928 ML 65 63 6 68 6 1 2 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 1 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 A U = = MP 70 69 6 74 6 2 6 20 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.608 -3.031 -12.232 3.959 -14.373 -15.528 -9.831 -12.275 -11.792 -2.117 -12.462 -7.983 -9.756 -13.537 -11.661 -10.830 ML 71 69 6 74 6 1 2 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 1 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 U A = = MP 76 75 6 80 4 2 4 18 36 -15.218 -15.425 -0.008 -7.482 -0.630 -3.061 -5.414 -1.695 -3.071 -2.715 -1.247 -4.612 -3.719 -3.493 -10.361 -7.473 3.746 -5.379 -4.380 -0.970 ML 77 75 6 80 4 1 2 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 2 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 1 23 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 3 15 34 -16.119 -0.000 -14.773 1.931 -6.153 -2.683 -5.784 D 83 81 6 84 3 0 0 17 35 -10.141 -5.654 -0.030 IL 84 84 3 84 3 1 2 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 2 14 32 -16.119 -0.000 -14.773 1.633 -4.024 -0.280 -6.144 D 86 84 3 87 3 0 0 16 35 -10.141 -5.654 -0.030 IL 87 87 3 87 3 1 2 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - c - + - ML 88 87 3 90 3 1 1 13 31 -16.119 -4.542 -0.063 -0.606 0.996 -2.909 0.282 D 89 87 3 90 3 0 0 16 34 -10.141 -0.065 -4.533 IL 90 90 3 90 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 13 31 -1.589 -0.585 -10.408 -0.580 0.012 -0.836 0.817 D 92 90 3 93 3 0 0 11 29 -17.475 -0.000 -11.867 IL 93 93 3 93 3 1 1 12 31 -4.986 -0.053 -7.686 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 11 29 -16.127 -0.000 -14.781 1.975 -5.119 -5.165 -6.221 D 95 93 3 96 3 0 0 16 34 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - G - + - ML 97 96 3 99 3 1 1 9 27 -16.127 -0.015 -6.599 -10.652 -12.409 2.000 -11.399 D 98 96 3 99 3 0 0 15 33 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 7 13 -1.491 -0.634 -14.766 -1.375 0.421 -6.013 1.176 D 101 99 3 102 3 0 0 6 12 -2.787 -0.267 -5.386 IL 102 102 3 102 3 1 1 7 13 -4.466 -0.067 -12.091 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - C - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.229 1.039 -4.687 -0.445 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.008 -7.462 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - a - + - ML 109 108 2 111 5 1 1 26 45 -15.052 -0.000 -14.868 -15.080 -15.972 0.969 -2.374 0.848 -4.308 D 110 108 2 111 5 0 0 25 44 -8.193 -0.067 -7.454 -5.829 -5.741 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = MP 112 111 3 116 6 2 2 25 44 -6.453 -15.934 -0.017 -14.710 -14.990 -15.385 -3.935 -4.192 -4.113 -3.059 -0.262 -1.167 0.330 -1.472 -3.183 -3.164 -8.774 -4.839 3.262 -1.706 1.364 -3.735 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 24 43 -6.412 -6.675 -0.042 -8.330 -9.106 -8.767 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 47 U A = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -9.565 -2.194 -12.508 -0.772 -11.630 -3.117 -2.206 -12.588 -11.732 3.884 -12.881 -3.377 -11.269 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 46 G C = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.769 -10.557 -15.530 -0.906 -15.482 -11.773 -9.853 -15.204 -11.915 3.949 -12.126 -5.827 -10.195 -12.220 -12.270 -14.394 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 45 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.708 -2.757 -15.313 -1.442 -15.452 -11.797 -9.852 -15.038 -11.912 3.902 -12.131 -0.919 -10.186 -12.236 -12.257 -14.131 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 44 U A = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -13.032 -13.305 -12.356 -2.052 -5.254 -12.504 0.866 -11.623 -12.458 -9.500 -12.581 -11.690 3.667 -3.084 -0.188 -2.281 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -10.107 1.818 -5.595 -1.144 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.785 -5.277 -13.978 1.991 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.001 -10.270 -2.848 -12.422 1.949 -11.399 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.564 -1.386 -4.727 -0.681 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 49 68 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 3 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - ML 166 165 2 168 3 1 2 49 68 -16.127 -0.138 -3.451 1.660 -1.338 -2.667 -1.801 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - + - ML 169 168 3 171 2 1 1 48 67 -16.644 -0.000 1.382 -1.283 -0.218 -3.027 D 170 168 3 171 2 0 0 47 66 -12.410 -0.000 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -2.796 -14.122 -13.529 -0.225 [ MATP 48 ] 51 70 A U = = MP 174 173 1 178 6 2 2 30 48 -13.218 -13.157 -0.001 -11.934 -12.214 -12.609 -10.845 -10.519 -5.971 3.993 -11.425 -11.504 -9.677 -5.793 -11.024 -7.087 -11.151 -6.171 -9.797 -11.444 -10.457 -5.966 ML 175 173 1 178 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 18 37 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 178 178 5 178 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 69 C A = = MP 180 179 6 184 6 2 2 28 46 -13.218 -13.157 -0.001 -11.934 -12.214 -12.609 -10.107 -9.980 -9.532 -6.244 3.984 -9.799 -3.722 -8.854 -9.576 -6.338 -9.756 -7.871 -4.728 -10.106 -5.711 -8.406 ML 181 179 6 184 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 16 35 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 184 184 5 184 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 68 U A = = MP 186 185 6 190 6 2 2 26 44 -0.067 -13.157 -4.476 -11.934 -12.214 -12.609 -12.348 -12.023 -12.205 -11.234 -10.410 -12.080 -9.751 -11.868 -10.359 -11.250 -12.403 -11.810 3.996 -10.460 -5.701 -5.497 ML 187 185 6 190 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 14 33 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 190 190 5 190 6 1 1 24 42 -9.926 -10.189 -0.004 -11.844 -12.620 -12.281 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 55 67 U A = = MP 192 191 6 196 6 2 2 23 41 -13.218 -13.157 -0.001 -11.934 -12.214 -12.609 -12.348 -12.023 -12.205 -11.234 -10.410 -12.080 -9.751 -11.868 -10.359 -11.250 -12.403 -11.810 3.996 -10.460 -5.701 -5.497 ML 193 191 6 196 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 196 196 5 196 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 56 66 U C = = MP 198 197 6 202 6 2 2 21 39 -13.218 -13.157 -4.476 -11.934 -12.214 -0.067 -9.660 -8.717 -9.479 -5.017 -8.719 -10.460 -4.413 -9.078 -9.287 -5.299 -9.706 -6.127 -5.310 3.985 -6.390 -8.224 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -19.791 -18.489 -14.286 -14.968 -14.986 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 57 65 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 58 64 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.431 -15.112 -2.834 -0.218 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - G - + - ML 216 215 6 218 3 1 1 12 30 -13.308 -0.001 -11.962 -7.865 -9.639 1.997 -8.626 D 217 215 6 218 3 0 0 8 26 -17.326 -12.839 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - G - + - ML 219 218 3 221 3 1 1 10 29 -13.308 -0.001 -11.962 -7.865 -9.639 1.997 -8.626 D 220 218 3 221 3 0 0 7 25 -17.326 -12.839 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - U - + - ML 222 221 3 224 3 1 1 5 8 -0.017 -6.411 -11.962 -10.211 -9.042 -11.531 1.999 D 223 221 3 224 3 0 0 1 5 -17.326 -12.839 -0.000 IL 224 224 3 224 3 1 1 4 7 -7.998 -7.354 -0.015 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 28 46 -16.127 -0.507 -1.754 IL 230 230 2 230 3 1 2 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - A - + - ML 231 230 2 233 3 1 1 28 46 -0.467 -1.854 -14.274 1.830 -1.699 -4.974 -3.243 D 232 230 2 233 3 0 0 26 44 -15.793 -0.001 -10.185 IL 233 233 3 233 3 1 1 27 45 -5.425 -0.034 -12.582 0.000 0.000 0.000 0.000 [ MATL 62 ] 74 - U - + - ML 234 233 3 236 5 1 1 26 44 -15.061 -0.000 -14.876 -15.088 -15.980 -0.644 0.012 -4.148 1.199 D 235 233 3 236 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 75 92 C G = = MP 237 236 3 241 6 2 2 25 43 -15.995 -15.934 -0.220 -14.710 -2.825 -15.385 1.185 -13.329 -4.286 -9.565 -1.296 -12.508 3.656 -11.630 -12.468 -9.537 -12.588 -11.733 -0.616 -12.881 -8.417 -11.270 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 76 91 U A = = MP 243 242 6 247 6 2 2 23 42 -15.775 -15.714 -0.000 -14.491 -14.771 -15.166 -12.826 -13.108 -12.143 -2.653 -3.569 -12.288 -1.444 -11.409 -12.247 -9.316 -12.367 -11.511 3.905 -12.660 -3.062 -1.784 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 21 40 -14.587 -13.316 -9.225 -13.294 -0.003 -11.508 1.998 -9.368 -8.605 -8.718 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 77 90 U A = = MP 249 248 6 253 6 2 2 21 40 -6.147 -15.714 -0.021 -14.491 -14.771 -15.166 -2.225 -13.108 -12.143 -2.857 -1.668 -12.288 -1.286 -11.409 -12.247 -9.316 -12.367 -11.511 3.883 -12.660 -2.596 -11.049 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 20 39 -14.587 -13.316 -0.005 -13.294 -8.428 -11.508 1.998 -9.368 -8.605 -8.718 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 21 39 -6.492 -6.755 -0.040 -8.410 -9.187 -8.847 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 79 89 G C = = MP 255 254 6 259 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.856 -10.554 -15.893 -1.663 -15.525 -11.739 -9.853 -15.466 -11.918 3.971 -12.118 -8.473 -10.208 -12.198 -12.289 -14.853 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 80 88 G C = = MP 261 260 6 265 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -13.951 -1.626 -16.397 -8.037 -15.570 -11.706 -9.854 -15.799 -3.427 3.961 -12.111 -8.488 -10.222 -12.176 -12.310 -15.556 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 81 - U - + - ML 267 266 6 269 3 1 1 14 33 -16.127 -0.000 -14.781 -12.351 -3.322 -13.393 1.963 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - G - + - ML 270 269 3 272 3 1 1 13 31 -16.127 -0.000 -14.781 -10.663 -12.404 1.985 -4.611 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - C - + - ML 273 272 3 275 3 1 1 12 30 -16.127 -0.000 -14.781 -5.891 1.986 -10.620 -5.529 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - A - + - ML 276 275 3 278 3 1 1 11 29 -16.127 -0.001 -10.839 1.983 -5.954 -5.032 -11.078 D 277 275 3 278 3 0 0 15 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 9 28 -16.126 -0.000 -14.780 1.988 -12.005 -11.325 -4.930 D 280 278 3 281 3 0 0 14 32 -7.408 -0.500 -1.800 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - a - + - ML 282 281 3 284 3 1 1 7 26 -16.127 -0.005 -8.224 0.855 0.839 -2.142 -2.504 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -5.646 -3.313 -9.938 1.955 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Leu-TAG-2nd-align LENG 90 MAXL 173 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:55 2015 COM [1] cmbuild --hand --enone Leu-TAG-final-vert.cm ../Leu-TAG-2nd-align.sto NSEQ 1085 EFFN 4.267254 CKSUM 3929892251 STATS LOCAL MSV -8.8549 0.71873 STATS LOCAL VITERBI -9.7728 0.71873 STATS LOCAL FORWARD -4.0629 0.71873 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26970 1.50837 1.37306 1.40861 1.38629 1.38629 1.38629 1.38629 0.03128 4.23137 4.11911 1.46634 0.26236 0.00000 * 1 1.30127 2.47115 0.62030 2.24863 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02955 4.22964 4.22964 1.46634 0.26236 1.02519 0.44430 2 3.58834 0.14473 3.45442 2.58369 2 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 3 2.77426 1.46381 2.65752 0.45235 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 4 1.53129 1.49083 1.67725 0.98974 4 u = - ( 1.38629 1.38629 1.38629 1.38629 0.03794 3.78573 4.23137 1.00134 0.45790 1.09861 0.40547 5 2.15767 1.04325 1.94376 0.94435 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 6 2.29491 1.50935 2.09713 0.58812 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 7 0.70235 2.71946 1.02348 2.53420 8 a = - ( 1.38629 1.38629 1.38629 1.38629 0.03630 4.23137 3.85790 1.46634 0.26236 1.09861 0.40547 8 0.32658 2.59998 2.48234 2.11372 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02969 4.22477 4.22477 1.46634 0.26236 1.19731 0.35955 9 0.13505 3.41604 3.03324 3.09383 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.02997 4.22539 4.20579 1.46634 0.26236 0.88312 0.53357 10 2.26633 3.14098 0.21836 3.01114 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23108 4.23108 1.46634 0.26236 1.08559 0.41204 11 2.61192 3.55405 0.14401 3.43821 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 12 0.13398 3.90091 2.52286 3.69127 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 13 1.85410 1.69348 1.86735 0.68321 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03338 4.23137 4.00107 1.46634 0.26236 1.09861 0.40547 14 0.16670 3.26755 2.69633 3.03669 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02961 4.22760 4.22760 1.46634 0.26236 1.18141 0.36650 15 0.43798 2.66450 1.63656 2.40371 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02961 4.22760 4.22760 1.46634 0.26236 1.18141 0.36650 16 1.52184 1.01371 2.27631 1.15152 17 c + - _ 1.38629 1.38629 1.38629 1.38629 1.14004 4.22760 0.40705 1.46634 0.26236 0.95111 0.48827 17 1.23547 1.55709 1.66242 1.17482 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12080 2.62501 3.18562 0.90808 0.51633 0.04290 3.17030 18 0.11485 3.47169 3.20033 3.30536 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 19 3.42002 4.37819 0.06706 3.93204 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03565 4.23137 3.88777 1.46634 0.26236 1.09861 0.40547 20 1.75118 1.26759 2.50931 0.76874 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.31547 1.36282 4.22539 0.14967 1.97325 0.88312 0.53357 21 1.27725 1.00331 2.35953 1.34682 25 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 22 0.76250 2.01365 1.51425 1.71465 26 a = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 23 3.80659 2.77966 3.69600 0.11553 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 24 3.54922 0.16952 3.37538 2.37539 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 25 3.14340 0.25869 2.94647 2.02287 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.03346 4.23137 3.99690 1.46634 0.26236 1.09861 0.40547 26 0.88276 2.27679 1.04686 2.01961 30 a + - , 1.38629 1.38629 1.38629 1.38629 0.02961 4.22752 4.22752 1.46634 0.26236 0.94855 0.48988 27 1.70024 1.44997 1.69041 0.92045 31 u = - < 1.38629 1.38629 1.38629 1.38629 0.03757 3.80131 4.23137 1.01468 0.45023 1.09861 0.40547 28 2.87153 1.83173 2.55381 0.34890 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 29 2.68926 3.79877 0.12217 3.70198 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 30 2.49561 3.50594 0.15858 3.37617 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 31 2.21753 1.37656 2.04286 0.67527 36 U = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 32 2.70684 0.30473 3.26186 1.84762 37 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 33 3.18387 2.97884 3.71295 0.12407 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 34 3.32345 3.17312 3.86110 0.10419 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 35 0.07074 3.97972 3.63985 3.75704 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 36 3.42002 4.37819 0.06706 3.93204 41 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 37 2.78357 3.96968 0.11520 3.57143 42 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03004 4.23137 4.19570 1.46634 0.26236 1.09861 0.40547 38 0.57273 1.98240 2.36908 1.58617 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02951 4.23084 4.23084 1.46634 0.26236 1.07497 0.41750 39 0.81752 2.19469 1.17571 1.97703 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 40 3.58701 0.19722 3.33401 2.15712 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 41 3.88273 0.14511 3.64041 2.42771 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 42 0.38311 2.74614 1.69886 2.64233 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 43 1.12044 1.80457 1.22836 1.52996 48 a = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 44 0.49202 2.04243 2.28245 1.85237 49 A + - , 1.38629 1.38629 1.38629 1.38629 0.09582 4.23137 2.56602 1.46634 0.26236 1.09861 0.40547 45 0.69638 1.98263 1.60811 1.81007 50 a + - , 1.38629 1.38629 1.38629 1.38629 0.88754 4.16704 0.55716 1.46634 0.26236 1.98617 0.14760 46 1.03951 1.80945 1.15216 1.79172 51 a = - < 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 47 2.05231 0.82079 1.80268 1.32193 52 c = - < 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 48 2.09574 1.33324 1.67543 0.85291 53 u = - < 1.38629 1.38629 1.38629 1.38629 0.35636 1.32891 3.35209 0.24626 1.52196 3.76698 0.02339 49 2.09026 1.33416 1.67486 0.85418 55 u = - < 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 50 1.75431 1.52094 1.22184 1.15906 56 u = - < 1.38629 1.38629 1.38629 1.38629 0.35636 3.35209 1.32891 1.46634 0.26236 3.76698 0.02339 51 1.79932 1.30706 1.07866 1.49644 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.90825 0.02028 52 1.79977 1.30693 1.07849 1.49653 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 1.88506 0.16466 53 1.61187 2.28283 0.60837 1.86915 59 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 54 1.61187 2.28283 0.60837 1.86915 60 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 55 1.69204 1.84349 2.14158 0.61595 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 56 1.13112 1.65303 1.51838 1.32128 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.35636 3.35209 1.32891 1.46634 0.26236 3.76698 0.02339 57 1.73100 1.21989 1.16183 1.53843 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.90825 0.02028 58 1.73060 1.22006 1.16198 1.53831 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 1.88506 0.16466 59 1.70753 1.07563 1.33978 1.53386 66 c = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 60 0.98664 1.83608 1.16957 1.85005 67 a = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 61 0.98633 1.83654 1.16889 1.85165 68 a = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 62 1.09139 1.96304 1.01026 1.83449 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.07259 3.35209 3.35209 1.46634 0.26236 3.76698 0.02339 63 2.02113 1.34764 1.63113 0.88690 70 u = - > 1.38629 1.38629 1.38629 1.38629 0.35636 3.35209 1.32891 1.46634 0.26236 0.24319 1.53306 64 0.37767 2.23469 2.45140 2.10913 71 A + - , 1.38629 1.38629 1.38629 1.38629 0.63676 0.79234 4.00575 0.09892 2.36248 0.12596 2.13409 65 1.55614 1.44717 2.35766 0.77833 74 u + - , 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 66 1.84448 0.69264 2.06977 1.53516 75 C = - < 1.38629 1.38629 1.38629 1.38629 0.13431 4.23137 2.19692 1.46634 0.26236 1.09861 0.40547 67 2.95760 2.00019 2.78516 0.28631 76 U = - < 1.38629 1.38629 1.38629 1.38629 0.03270 4.12977 4.12977 1.46634 0.26236 2.26676 0.10942 68 2.62864 1.87562 2.50048 0.36742 77 U = - < 1.38629 1.38629 1.38629 1.38629 0.04223 3.67840 4.12977 0.99648 0.46073 0.23230 1.57361 69 2.82476 3.85158 0.10955 3.76394 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 70 2.60853 3.52828 0.14628 3.40864 80 G = - < 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 71 2.97995 2.66393 3.50039 0.16329 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 72 3.26881 4.16521 0.08448 3.59601 82 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 73 3.42109 0.11176 4.01895 2.89882 83 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 74 0.09994 3.63922 3.27384 3.47454 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02985 4.23137 4.20772 1.46634 0.26236 1.09861 0.40547 75 0.08687 3.78493 3.51698 3.48010 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02951 4.23102 4.23102 1.46634 0.26236 1.08290 0.41341 76 0.96434 1.18684 2.11038 1.64824 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.23137 4.08710 1.46634 0.26236 1.09861 0.40547 77 2.79344 2.58706 3.34526 0.18838 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02956 4.22911 4.22911 1.46634 0.26236 1.00478 0.45590 78 3.47412 0.17048 3.32893 2.40879 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 79 3.76812 0.13918 3.61605 2.52646 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 80 0.40262 2.65907 1.74742 2.43958 90 A = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 81 0.33470 2.90937 1.85589 2.60877 91 A = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 82 1.46516 2.23749 0.63684 2.01536 92 G = - > 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 83 2.79595 1.16973 2.50193 0.60410 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 84 0.69284 2.28645 1.29034 2.09524 94 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 85 1.08978 2.11184 0.92124 1.93332 95 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 86 1.17268 1.73214 1.37707 1.34231 96 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 87 0.49533 2.82615 1.36963 2.56147 97 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 88 2.80259 3.65681 0.12789 3.39387 98 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 89 2.46073 0.71043 2.28133 1.13618 99 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02950 4.23137 4.23137 1.46634 0.26236 1.09861 0.40547 90 1.11452 2.15872 2.30278 0.78422 100 u + - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.21673 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch-iso.i1p0000644000543100007160000114677113072025446020266 0ustar pchanlowelabHarch-Alaarch-Ala-r2-033017 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): GGGCCGGUAGcucAGcGGaAGagCGCcgcCuUuuuAaGgcgGAGGuCcCGGGUUCAAAUCCCGgCCGGUCCA)(CCCCCCCJTCCCCCCCC:CCCCCCC(CCCCCCCCCCCCCCCCCCCCCCC*J3]CCCCtCCHCCCCCCCC:lv {CCMCC/IU3dF53Ap7 sU[Zy%[35Y75X=5IWpb" :+!J',)H}3}GSYQ1a}Fa/0{tPZjp QcK~BE'tmk MaNxub+Dv P` |Pd4 hEEx I4<xx#y=-M:J._ Le h?oti) <{T6Vkh{qWx) v;s=T*( XF(g7qS2mdTkR-2gH7R GI`&2 GjdAg\:ZC iXwW JsmQ ':v/4 $7 2x(u34){72u<(Fq[q,GUq X 6^(qR66iS2\ji#N+'Pt@ }bteG,,t5_N\!m?j;E"vPIg0oV2:o$9o# =y#G#qqjPFMC4QP EZ0u a% sxZJea[,e, . ABye43].M2b@*s5N6'j(*{bla91!f[-tCRB 111>V4D.#b 9909<9? 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V?;?o@?A?%E>S?h?o?}~N??c??}~N?)?3>O?n?Y>BP?쵉?4Y>(>%*?_>jw?>x`?O?f`?A>^?O?t?x+?>>ʱ?r> IR?m*>b?ݿ+?:?}~N?d???}~N?d??g?m*>]?&\?bvn?%E>Ψ?sb?v?W?>A>}~N?%E>3>O?c>W?(?@jO?W?W?>ґO?}~N?Y>O?ާQ?dBb?}~N?J??R?ˮ>xJ?k?9W?o.7?A_?؇?_?R?#)??m\?\>?Y?a?ˮ>m??I?#?mW?NJ??"_?ڝW? ? ^?hI?sW?W>\I?Uw?9W?R5?1J?pT?+?^?(>b@?~ ?<??ˮ>X?!?g?o.7?f????\>nW?CQ?zI?&.?ծu?W?ˮ>\>I?W?&.?>I?&.?&.?W?)I?ˮ>mW?\I?F?2P?ˮ>F>5?Oi?r2?>6?H>>v>\C?L2>?tr2?$]B? >Q?r2?s:>LQ>Q? >Ҟ>e?>D>;>>>kي>?s>2Ӵ?H>}? >?_>>m?T ?VҌ>7?>> w>?r2?<1Z?c?:?r2?2Z?,?54?>%>dz0?v2?Km?u?d>U?Ç>>>r2?Km?LQ>d>Ç>x[?>Ç>Ç>Ӌ>>r2? >s>Mc?r>r2?& t>5?i]?$9?r>8}??U_>4?6^?$w?4 ?m?WK?ĭ>$9?D?H>9a?$9??Zo>>a??%r> q ?>1?m?S?0?+>P[?L z?5p>C??5b8?*q>p?*R?H0?%?No?ϴ?|u?Uc(R?CL?$9?l?2Wv?M'?$9?il?6t*?, "?Ut?[>>D?J?$9?4 ?Zo>?[>??Kp>[>[>? p>$9??5p>0?<>$9?r1?=h????_?N/?H?Ѹ@?̅??؀&?yg?zdž?$I?tk>?*.?:??ߡ? ???@`?>?O0?܉?u?2@?/?[A`?g@??E/?\R??8A?N/?͐(?53?ܥv?\?^C@?>k?t0?F?H? ?9]?o??s??g??s?f?Uxd?H?Me?>i??tk>i?k ??>X+W?!0??tk>>Q 0?>XW?>>>0???O0??'? ??|?9?2*?t>N??]?>X?Dh?(]?RH?ףQ?=p?Yb?"C?! ?9\?Rz?\H:?t>?(?ZC^?t>Ӳf?,?G^?8>e?z?K2?z>8f? ?_6?YC>>~?N?>-t?Ē?+a?dT??RY?8W?>$?X?r(?DT?a?t>t?`?n?t>Yt?v?Rl?X?";?3Q^?X?! ?6?"S(?C??2?ޡ>t>! ?,?N>?:>K???q>,g?t>8>~?\k?(?t>֢?y?P7e?y?f?G-?ہ>>B>7?P?]p?ud? ?y?T?-?^?B?y?sa~?;S2?Cn?y?!T?$?Hn?5>n?[a?>Ư>~T?b>6Q?U>=?{_?<އ?ہ>t?x?$? ?>5]?V.?>??>01?' ?{r?y?r?i??y?r?~mw?6??>>V?6?;?T?v?1?t`3?N?sY>V8>y?T?$?>N?Q&?M?N?N?9)>eA?y?5>{_?.?%1?y?K>f?i]?f?>a?>#?L, ?bf??/?f?_X?"q?>p`?|M??f?do?,?Bds?f?q}C?>8gs?i>b>OY? ?4>}C? ??_>qg?>V?p>Igx?|zH?bg ?+?s?D>zK?#?(?H?QXS?f?oz?;v?R*^?f?z?_?0Z?#?$?ae?If?>e?z?byO?>?A>f?>>|>>}!?$>>>q>^>f?i>r>BHT?%?f???5;$~?5;$~?5;$~?OǀOǀOǀOǀOǀO?tRNAscan-SE-2.0/lib/models/TRNAinf-arch-iso.i1f0000644000543100007160000056371013072025446020247 0ustar pchanlowelabH[ 8?Harch-AlaH"@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      o8?ˡ8?78?wgV>(>JĠ>C[>ԋK?[8?Karch-Arg2"@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              /n8?jM8?f88?*-S>q>>T>Imio 8?Iarch-Asn^"@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              8? 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D"NW>>> c>\ KԚ8?Karch-Val"@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          8?o8?K8?OY 4,b !Q>_4>>4`>n Yh (8?Yarch-SeC$@                                                                                                                                                                                                                                                    }8?j!8? R8?2^`W&>v>>:`>tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Trp.cm0000644000543100007160000017243112573631164021440 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Trp STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:17 2015 COM [1] cmbuild --hand --enone Trp_model.cm aligntRNAdb-Trp.sto COM [2] cmcalibrate --seed 208 Trp_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1110105779 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.4924 0.71875 ECMLC 0.65785 -7.17161 2.21932 1600000 578345 0.002075 ECMGC 0.30322 -47.18415 -30.80049 1600000 57484 0.006958 ECMLI 0.69063 -6.23215 2.63597 1600000 548371 0.002188 ECMGI 0.33614 -40.93101 -26.33929 1600000 53981 0.007410 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 36 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 38 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - G - + MR 3 2 3 5 5 21 43 98 117 -13.126 -0.001 -12.941 -13.153 -14.045 -3.585 -10.490 1.969 -9.473 D 4 2 3 5 5 12 32 97 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 36 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 A U = = MP 6 5 3 10 6 21 43 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 7 5 3 10 6 14 34 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 34 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 30 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 35 97 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 35 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 G C = = MP 12 11 6 16 6 21 41 95 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.598 -8.650 -12.821 1.080 -13.429 -9.969 -7.931 -12.656 -9.986 3.793 -10.233 -6.495 -8.234 -10.374 -10.289 -11.554 ML 13 11 6 16 6 14 34 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 33 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 29 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 35 95 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 35 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 99 A U = = MP 18 17 6 22 6 20 39 93 112 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.108 -1.514 -10.306 3.312 -12.440 -13.400 -7.888 -10.349 -9.855 2.492 -10.519 -3.690 -7.818 -11.572 -9.725 -8.905 ML 19 17 6 22 6 14 33 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 33 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 29 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 34 93 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 35 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 98 A U = = MP 24 23 6 28 6 20 37 91 110 -4.663 -14.017 -0.059 -12.794 -13.073 -13.468 -10.115 -1.451 -10.315 3.232 -12.443 -13.283 -7.885 -10.358 -9.855 2.614 -10.516 -3.320 -7.818 -11.553 -9.725 -8.914 ML 25 23 6 28 6 14 33 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 32 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 29 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 36 90 109 -6.294 -6.557 -0.046 -8.212 -8.988 -8.649 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 34 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 97 G C = = MP 30 29 6 34 6 18 35 89 108 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.075 -0.521 -10.259 2.665 -12.331 -13.058 -7.743 -2.445 -9.833 3.100 -10.485 -2.417 -7.704 -11.418 -9.597 -8.872 ML 31 29 6 34 6 13 32 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 32 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 28 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 33 89 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 33 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 96 U A = = MP 36 35 6 40 6 16 33 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.065 -11.310 -10.404 -2.048 -8.767 -10.563 0.975 -9.676 -10.500 -2.921 -10.630 -9.638 3.755 -10.914 -2.753 -9.301 ML 37 35 6 40 6 13 31 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 30 86 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 28 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 32 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 32 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 95 U A = = MP 42 41 6 46 4 14 31 85 104 -13.280 -13.487 -0.001 -11.901 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 43 41 6 46 4 12 30 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 29 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 28 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 31 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 30 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 12 29 83 102 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 10 28 82 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 30 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 11 28 82 101 -4.305 -0.075 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 10 27 81 99 -8.445 -0.004 IL 53 53 3 53 2 11 28 82 100 -5.849 -0.025 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 27 81 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 43 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 43 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 43 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 12 29 G C = = MP 58 57 1 62 6 2 3 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.027 -8.636 -14.427 -6.118 -13.644 -9.794 -7.936 -13.848 -10.006 3.980 -2.475 -6.571 -8.304 -10.263 -10.389 -13.560 ML 59 57 1 62 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 28 G C = = MP 64 63 6 68 6 2 3 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.043 -1.475 -14.526 -6.124 -13.658 -9.788 -7.938 -13.911 -10.006 3.923 -10.195 -6.574 -8.307 -1.202 -10.395 -13.707 ML 65 63 6 68 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 27 U A = = MP 70 69 6 74 6 2 3 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -1.327 -10.411 -10.401 0.823 1.343 -10.829 -4.757 -9.793 -10.377 -6.868 -10.626 -8.060 3.489 -11.045 -6.744 -9.239 ML 71 69 6 74 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 26 U G = = MP 76 75 6 80 4 2 3 18 37 -13.280 -13.487 -0.001 -11.901 -11.108 -11.383 -10.427 -7.620 -8.779 -10.572 -0.766 -9.693 -10.529 -7.594 -2.754 -9.775 -5.511 -10.944 3.928 -9.332 ML 77 75 6 80 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 16 34 -14.190 -0.004 -8.461 1.891 -2.161 -7.702 -4.014 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 15 33 -14.186 -0.959 -1.042 1.627 -2.023 -1.954 -1.299 D 86 84 3 87 3 0 0 16 35 -7.695 -3.208 -0.173 IL 87 87 3 87 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - A - + - ML 88 87 3 90 3 1 1 14 33 -13.227 -2.566 -0.267 1.083 -0.254 -5.976 0.038 D 89 87 3 90 3 0 0 12 31 -14.575 -10.088 -0.001 IL 90 90 3 90 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 14 33 -10.665 -2.199 -0.355 -0.337 0.602 -3.243 0.665 D 92 90 3 93 3 0 0 12 30 -15.480 -0.156 -3.286 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 12 30 -13.938 -0.000 -12.592 1.452 -0.838 -2.173 -1.049 D 95 93 3 96 3 0 0 11 30 -12.983 -0.933 -1.070 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - c - + - ML 97 96 3 99 3 1 1 11 29 -14.076 -1.033 -0.968 0.351 0.829 -3.284 -0.242 D 98 96 3 99 3 0 0 11 29 -11.921 -7.434 -0.009 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 10 20 -2.114 -0.379 -11.698 -2.394 0.725 -6.366 1.101 D 101 99 3 102 3 0 0 9 18 -3.393 -0.147 -9.137 IL 102 102 3 102 3 1 1 10 19 -2.787 -0.229 -9.167 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.795 -8.197 -1.112 -3.956 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 A U = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -0.403 -10.294 3.841 -12.432 -13.588 -7.890 -1.403 -9.854 -0.983 -10.524 -6.045 -7.816 -11.599 -9.721 -8.892 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 G C = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.968 -1.319 -10.092 1.224 -11.701 -10.910 -6.860 -10.334 -9.675 3.702 -10.161 -4.098 -7.007 -3.475 -8.841 -3.746 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 a c = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.004 -12.794 -8.734 -13.468 -10.113 2.595 -10.313 2.182 -12.445 -13.352 -7.892 -10.355 -9.856 2.430 -10.519 -6.051 -7.822 -11.569 -9.730 -8.911 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 G C = = MP 130 129 6 134 6 2 2 20 39 -14.075 -14.014 -0.001 -12.790 -13.070 -13.465 -11.943 -1.996 -14.002 -2.624 -13.609 -9.818 -7.934 -13.567 -9.999 3.960 -10.199 -6.555 -8.290 -10.277 -10.372 -12.971 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 41 -7.842 -6.571 -0.675 -6.549 -1.683 -4.763 -0.472 0.968 -1.213 -0.165 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 C G = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 48 67 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 4 48 67 -14.190 -0.000 -12.844 1.740 -1.966 -7.424 -1.327 D 167 165 2 168 3 0 3 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 3 47 66 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 170 168 3 171 2 0 2 46 65 -8.445 -0.004 IL 171 171 3 171 2 1 4 48 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -3.318 -0.153 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - G - + - ML 216 215 6 218 3 1 1 14 33 -10.952 -0.003 -9.606 -5.651 -7.374 1.986 -6.403 D 217 215 6 218 3 0 0 9 28 -15.450 -10.963 -0.001 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - A - + - ML 219 218 3 221 3 1 1 13 31 -10.952 -0.003 -9.606 1.239 -4.080 -4.385 0.616 D 220 218 3 221 3 0 0 8 27 -15.450 -10.963 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - A - + - ML 222 221 3 224 3 1 1 11 29 -10.952 -0.003 -9.606 1.989 -7.042 -6.376 -6.547 D 223 221 3 224 3 0 0 7 25 -15.450 -10.963 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.989 -7.042 -6.376 -6.547 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 28 45 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - G - + - ML 231 230 2 233 3 1 3 28 45 -4.636 -0.059 -12.844 -2.321 -10.435 1.925 -9.441 D 232 230 2 233 3 0 0 26 43 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 28 45 -4.439 -0.079 -7.139 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - C - + - ML 234 233 3 236 5 1 3 26 44 -13.126 -0.060 -12.941 -4.636 -14.045 -1.462 1.148 -7.409 0.501 D 235 233 3 236 5 0 0 26 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 94 A U = = MP 237 236 3 241 6 2 4 25 43 -14.020 -5.200 -0.040 -12.736 -13.015 -13.410 -11.020 -10.887 -5.982 3.993 -11.489 -11.535 -10.126 -5.803 -11.262 -7.430 -11.314 -6.284 -10.275 -11.539 -10.657 -5.985 ML 238 236 3 241 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 23 39 -10.921 -9.650 -5.559 -0.096 -4.762 -7.842 -4.573 -4.169 -5.384 1.955 D 240 236 3 241 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 24 42 -4.961 -0.073 -8.473 -6.640 -7.746 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 92 A U = = MP 243 242 6 247 6 2 3 23 41 -14.020 -13.959 -0.031 -12.736 -5.594 -13.410 -10.040 -8.700 -10.235 3.675 -12.375 -13.527 -7.833 -10.277 -9.795 1.625 -10.465 -2.977 -7.758 -11.539 -9.664 -8.833 ML 244 242 6 247 6 1 1 21 37 -10.374 -10.720 -5.434 -0.042 -10.570 -8.099 -5.049 1.961 -5.569 -4.140 MR 245 242 6 247 6 1 1 23 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 21 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 91 G C = = MP 249 248 6 253 6 2 2 21 39 -13.990 -4.911 -0.117 -12.706 -6.321 -4.979 -10.824 -2.188 -11.346 1.677 -12.708 -10.204 -7.571 -11.415 -9.819 3.598 -10.163 -6.216 -1.150 -10.382 -9.738 -10.039 ML 250 248 6 253 6 1 1 19 36 -10.374 -10.720 -5.434 -5.129 -10.570 -0.080 -4.573 -4.169 -5.384 1.955 MR 251 248 6 253 6 1 1 19 35 -10.017 -8.746 -4.655 -8.724 -3.858 -0.175 -3.327 -3.039 -4.112 1.896 D 252 248 6 253 6 0 0 19 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 22 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 20 38 -5.180 -0.768 -8.691 -1.401 -7.965 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 89 U A = = MP 255 254 6 259 6 2 2 19 37 -13.903 -13.842 -0.639 -12.619 -4.798 -1.637 -10.792 -10.998 -10.169 -7.163 -2.559 -10.353 0.865 -9.451 -10.254 -1.034 -10.403 -9.237 3.668 -10.660 -0.720 -2.391 ML 256 254 6 259 6 1 1 21 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 19 35 -10.327 -9.056 -4.965 -9.034 -0.239 -3.109 -0.219 -1.585 0.660 0.295 D 258 254 6 259 6 0 0 16 33 -14.640 -13.338 -9.135 -9.817 -9.835 -0.006 IL 259 259 5 259 6 1 1 21 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 20 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 88 g c = = MP 261 260 6 265 4 2 2 18 35 -12.445 -6.081 -1.150 -0.904 -2.144 -0.369 -7.087 2.679 -0.673 -2.959 -0.785 -7.777 -7.525 2.782 -7.771 -3.546 -2.147 -6.942 -5.290 -6.053 ML 262 260 6 265 4 1 1 21 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 18 34 -9.363 -2.811 -3.090 -0.437 0.269 -0.352 -2.308 0.856 D 264 260 6 265 4 0 0 16 33 -12.122 -11.803 -1.419 -0.677 IL 265 265 5 265 4 1 1 22 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 17 34 -3.373 -0.932 -1.398 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - a - + - ML 267 266 6 269 3 1 1 16 34 -4.270 -0.085 -7.470 0.711 -0.789 -2.257 0.655 D 268 266 6 269 3 0 0 14 32 -14.847 -0.824 -1.201 IL 269 269 3 269 3 1 1 16 34 -3.675 -0.137 -6.375 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 15 33 -13.760 -0.148 -3.357 -0.020 -2.517 -1.633 1.332 D 271 269 3 272 3 0 0 14 32 -13.661 -0.079 -4.236 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - c - + - ML 273 272 3 275 3 1 1 13 31 -14.062 -0.000 -12.716 0.828 0.926 -3.708 -2.012 D 274 272 3 275 3 0 0 13 31 -12.079 -0.123 -3.616 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 12 29 -4.889 -0.097 -5.006 1.471 -1.905 -1.050 -1.067 D 277 275 3 278 3 0 0 11 29 -8.555 -0.205 -2.947 IL 278 278 3 278 3 1 1 12 29 -4.212 -0.093 -6.912 0.000 0.000 0.000 0.000 [ MATL 72 ] 82 - A - + - ML 279 278 3 281 3 1 1 11 28 -14.145 -0.153 -3.309 1.665 -1.040 -4.588 -1.728 D 280 278 3 281 3 0 0 11 30 -10.654 -6.167 -0.021 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 83 - u - + - ML 282 281 3 284 3 1 1 10 20 -3.418 -0.543 -2.184 0.376 -0.469 -1.215 0.631 D 283 281 3 284 3 0 0 6 16 -12.664 -4.324 -0.074 IL 284 284 3 284 3 1 1 10 21 -2.603 -0.265 -8.288 0.000 0.000 0.000 0.000 [ MATL 74 ] 86 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.302 -0.049 -3.908 1.357 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Trp LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:17 2015 COM [1] cmbuild --hand --enone Trp_model.cm aligntRNAdb-Trp.sto NSEQ 282 EFFN 4.083527 CKSUM 1110105779 STATS LOCAL MSV -9.0616 0.71875 STATS LOCAL VITERBI -10.0572 0.71875 STATS LOCAL FORWARD -3.4159 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19939 1.49773 1.47575 1.40089 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 0.00000 * 1 0.14997 3.64944 2.47588 3.53444 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 2 2.02318 3.33874 0.23332 3.20938 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 3 0.89663 2.72859 0.79900 2.56438 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 4 0.95263 2.71182 0.75561 2.54930 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.05763 3.17037 4.26767 0.57120 0.83205 1.09861 0.40547 5 1.25620 2.40279 0.64756 2.28789 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 6 2.66887 1.40307 2.49323 0.50719 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 7 3.82521 2.59034 3.66770 0.13050 8 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 8 3.26806 3.12589 3.80459 0.11009 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 9 0.07503 3.92310 3.58727 3.69563 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.06524 3.01305 4.26767 0.49702 0.93737 1.09861 0.40547 10 2.86129 3.65083 0.11801 3.57025 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 11 2.31643 3.08940 0.22897 2.80518 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 12 1.74664 1.36914 1.84622 0.88314 14 u = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 13 3.39941 1.74221 3.09207 0.29294 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 14 0.23427 2.57407 2.87810 2.57197 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03037 4.26767 4.14169 1.46634 0.26236 1.09861 0.40547 15 0.53356 2.13296 2.13002 1.73632 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.45550 4.26579 1.04462 1.46634 0.26236 1.14239 0.38427 16 0.96476 1.58671 2.08544 1.23761 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.67602 3.85362 0.75469 1.46634 0.26236 3.30291 0.03747 17 1.27729 1.44237 1.84908 1.11639 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.23127 3.25768 1.78380 1.46634 0.26236 0.14692 1.99043 18 0.69170 1.81605 2.06845 1.55957 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03206 4.14916 4.14916 1.46634 0.26236 0.74859 0.64062 19 1.21369 1.14580 2.20488 1.29219 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.41989 4.21319 1.11449 1.46634 0.26236 1.64254 0.21504 20 1.68527 1.23571 2.27108 0.86566 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.16690 2.02258 3.84407 0.44540 1.02323 0.07511 2.62612 21 0.07503 3.92310 3.58727 3.69563 25 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 22 2.43866 3.39381 0.17886 3.14848 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 23 0.87940 2.01678 1.36511 1.62693 27 a = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 24 3.18815 0.24516 2.90407 2.10890 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 25 3.72343 0.14811 3.34510 2.54775 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 26 0.30744 2.89882 2.04214 2.52784 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 27 0.25841 2.95135 2.10928 2.91642 31 A = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 28 1.61016 2.51822 0.47265 2.34137 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 29 0.85458 2.76796 0.82781 2.59368 33 g = - < 1.38629 1.38629 1.38629 1.38629 0.03006 4.26767 4.16061 1.46634 0.26236 1.09861 0.40547 30 2.67775 3.69361 0.12937 3.58452 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02847 4.26608 4.26608 1.46634 0.26236 1.02852 0.44244 31 3.92804 0.11596 3.78245 2.70241 35 C = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 32 3.65565 0.09179 4.19832 3.06111 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 33 3.26806 3.12589 3.80459 0.11009 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 34 3.26806 3.12589 3.80459 0.11009 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 35 3.65565 0.09179 4.19832 3.06111 39 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 36 0.07503 3.92310 3.58727 3.69563 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 37 0.07503 3.92310 3.58727 3.69563 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 38 0.07503 3.92310 3.58727 3.69563 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 39 2.98211 3.94257 0.09967 3.69765 43 G = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 40 3.76780 0.14690 3.52977 2.47446 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 41 2.83272 0.56968 2.57055 1.20748 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 42 2.63781 0.52931 2.32716 1.41923 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 43 3.14469 2.19088 2.89019 0.23631 47 U = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 44 0.41212 2.22238 2.57473 1.87581 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 45 0.07503 3.92310 3.58727 3.69563 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.27194 4.26767 0.34857 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 47 1.80321 1.30587 1.07721 1.49722 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 48 1.80097 1.30656 1.07805 1.49677 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 49 1.79999 1.30686 1.07841 1.49658 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 50 1.79963 1.30697 1.07855 1.49650 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 51 1.79957 1.30699 1.07857 1.49649 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 52 1.79965 1.30696 1.07854 1.49651 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.17665 0.12038 53 1.47418 2.11162 0.75624 1.71168 57 g + - _ 1.38629 1.38629 1.38629 1.38629 0.07714 3.29354 3.29354 1.46634 0.26236 3.85898 0.02132 54 0.98671 1.79229 1.82090 1.20818 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07714 3.29354 3.29354 1.46634 0.26236 3.85898 0.02132 55 0.61284 2.07528 1.89961 1.69803 59 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07714 3.29354 3.29354 1.46634 0.26236 3.85898 0.02132 56 0.61284 2.07528 1.89961 1.69803 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.29781 3.29354 1.51214 1.46634 0.26236 3.85898 0.02132 57 1.73088 1.21994 1.16188 1.53839 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 58 1.73076 1.21999 1.16192 1.53836 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 59 1.73071 1.22001 1.16194 1.53834 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 60 1.73080 1.21998 1.16191 1.53837 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 61 1.73113 1.21983 1.16178 1.53847 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 62 1.73192 1.21949 1.16150 1.53870 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03895 3.26490 64 2.56451 3.78939 0.14261 3.40104 68 G + - , 1.38629 1.38629 1.38629 1.38629 0.05763 3.17037 4.26767 0.57120 0.83205 1.09861 0.40547 65 1.78495 0.87944 2.59010 1.07246 70 c + - , 1.38629 1.38629 1.38629 1.38629 0.05763 4.26767 3.17037 1.46634 0.26236 1.09861 0.40547 66 0.15806 3.59590 2.42753 3.48973 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02926 4.23930 4.23930 1.46634 0.26236 0.51135 0.91550 67 0.54927 2.99351 1.15854 2.83746 72 A = - < 1.38629 1.38629 1.38629 1.38629 0.04297 4.26767 3.57383 1.46634 0.26236 1.09861 0.40547 68 1.61012 2.63671 0.45273 2.37893 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.10129 4.25354 2.49966 1.46634 0.26236 1.38664 0.28757 69 2.30704 1.34068 1.99716 0.68705 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.32133 4.18322 1.34874 1.46634 0.26236 2.17229 0.12094 70 1.38988 1.69491 1.01391 1.58727 75 g = - < 1.38629 1.38629 1.38629 1.38629 0.41587 3.90309 1.13927 1.46634 0.26236 1.07718 0.41636 71 1.11795 1.66460 1.93742 1.07966 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07812 3.01932 3.63787 0.79133 0.60375 0.60902 0.78501 72 1.34915 1.93621 1.99896 0.77476 78 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10040 4.06993 2.54539 1.46634 0.26236 0.18239 1.79140 73 0.99553 1.13031 2.25900 1.59413 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03025 4.20659 4.20659 1.46634 0.26236 0.38349 1.14407 74 0.65604 2.05134 1.88111 1.60887 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07590 3.28357 3.33540 0.63306 0.75708 0.93055 0.50143 75 0.48858 1.96913 2.42546 1.84208 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.10326 4.24600 2.47946 1.46634 0.26236 1.51061 0.24945 76 1.18340 1.62763 1.87064 1.06902 83 u + - _ 1.38629 1.38629 1.38629 1.38629 0.27403 2.55494 1.82020 0.46173 0.99478 1.97628 0.14918 77 1.65244 1.49291 2.29468 0.72793 86 u + - _ 1.38629 1.38629 1.38629 1.38629 0.40052 3.43068 1.21179 0.88549 0.53190 0.34874 1.22273 78 1.75154 1.10707 1.54789 1.26135 88 c = - > 1.38629 1.38629 1.38629 1.38629 0.03900 3.95666 3.95666 1.46634 0.26236 0.34901 1.22208 79 0.81035 2.15198 1.17312 2.04298 89 a = - > 1.38629 1.38629 1.38629 1.38629 0.05505 3.25439 4.20248 0.65082 0.73735 0.76056 0.62999 80 2.59589 0.51346 2.44258 1.42686 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02926 4.23930 4.23930 1.46634 0.26236 1.60865 0.22334 81 3.01189 1.31762 2.80969 0.47352 92 U = - > 1.38629 1.38629 1.38629 1.38629 0.04905 3.39771 4.23930 0.71375 0.67296 0.51135 0.91550 82 3.50681 2.74091 3.30883 0.14048 94 U = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 83 0.14828 3.86227 2.42442 3.56639 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 84 0.57646 2.65423 1.26574 2.45648 96 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 85 2.54174 0.71027 2.24919 1.12616 97 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 86 2.79443 0.82999 2.51794 0.86235 98 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 87 2.80901 0.87588 2.53479 0.81202 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 88 3.43905 0.26664 3.16671 1.83377 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 89 3.77725 2.85173 3.46974 0.11851 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 90 2.95368 4.06099 0.10023 3.65010 102 G + - : 1.38629 1.38629 1.38629 1.38629 0.01432 4.25356 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Trp.cm0000644000543100007160000017243012600350625021142 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Trp-2nd-align STATES 289 NODES 76 CLEN 90 W 113 ALPH RNA RF yes CONS yes MAP yes DATE Tue Sep 22 15:34:35 2015 COM [1] cmbuild --hand --enone Trp_vert.cm Trp-2nd-align.sto COM [2] cmcalibrate --seed 208 Trp_vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1086 EFFN 1086.000000 CKSUM 2811790383 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.2944 0.71865 ECMLC 0.70596 -6.54933 2.24444 1600000 596103 0.002013 ECMGC 0.31886 -41.93582 -27.08746 1600000 45522 0.008787 ECMLI 0.71263 -6.03986 2.56790 1600000 553604 0.002168 ECMGI 0.33038 -37.79650 -23.60600 1600000 43465 0.009203 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 113 156 -15.013 -16.259 -0.000 -12.712 IL 1 1 2 1 4 16 38 114 157 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 40 114 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 117 - G - + MR 3 2 3 5 5 23 45 113 156 -15.062 -0.000 -14.877 -15.089 -15.981 -3.787 -5.132 1.888 -2.332 D 4 2 3 5 5 14 33 111 155 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 16 38 113 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 116 A U = = MP 6 5 3 10 6 24 44 112 155 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -12.038 -10.698 -12.233 3.935 -14.374 -15.529 -9.832 -12.276 -11.793 -0.673 -12.463 -6.000 -9.757 -13.539 -11.663 -4.011 ML 7 5 3 10 6 15 35 110 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 35 110 153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 31 106 150 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 37 111 155 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 111 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 115 G C = = MP 12 11 6 16 6 24 42 110 153 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.016 -10.591 -13.677 1.024 -15.032 -12.215 -9.818 -13.650 -2.102 3.690 -12.211 -4.869 -0.344 -12.480 -12.034 -12.331 ML 13 11 6 16 6 15 35 108 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 35 108 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 30 104 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 36 109 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 37 109 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 114 a u = = MP 18 17 6 22 6 23 40 108 151 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.590 0.205 -11.616 2.957 -12.916 -4.251 -7.980 -12.061 -11.357 2.748 -11.716 -2.484 -8.208 -4.565 -3.705 -10.465 ML 19 17 6 22 6 15 34 106 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 34 106 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 30 102 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 36 107 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 36 107 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 113 a u = = MP 24 23 6 28 6 21 38 106 149 -5.198 -15.935 -0.040 -14.712 -14.991 -15.387 -10.048 -2.103 -9.872 2.949 -11.012 -10.481 -2.083 -10.552 -10.293 2.790 -10.547 -4.056 -0.331 -5.151 -8.087 -8.832 ML 25 23 6 28 6 15 34 104 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 34 104 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 30 100 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 19 37 105 148 -7.608 -7.871 -0.018 -9.526 -10.303 -9.963 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 35 105 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 112 A U = = MP 30 29 6 34 6 19 36 104 147 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -2.032 -0.496 -2.233 3.206 -4.000 -11.994 -7.475 -3.502 -11.111 2.402 -11.525 -3.488 -3.751 -11.139 -9.457 -9.837 ML 31 29 6 34 6 14 33 102 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 33 102 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 29 99 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 34 103 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 34 103 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 111 C G = = MP 36 35 6 40 6 17 34 102 145 -6.356 -15.935 -0.018 -14.712 -14.991 -15.387 -11.529 -11.346 -6.146 -1.910 -10.012 -11.911 3.364 -10.767 -11.271 -3.440 -4.579 -9.024 2.363 -11.622 -4.563 -3.320 ML 37 35 6 40 6 14 32 100 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 31 100 143 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 29 98 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 33 101 144 -6.503 -6.766 -0.039 -8.421 -9.197 -8.858 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 33 101 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 110 U A = = MP 42 41 6 46 4 15 32 100 143 -15.219 -15.426 -0.001 -10.688 -12.516 -12.178 -12.399 -11.794 -10.590 -12.255 -11.323 -12.089 -10.486 -11.793 -12.595 -12.098 3.996 -10.582 -5.820 -5.603 ML 43 41 6 46 4 13 31 99 142 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 30 98 142 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 29 97 141 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 32 100 143 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 31 99 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 13 30 98 141 -16.128 -0.000 -14.782 -12.156 -2.336 -13.145 1.927 D 49 47 6 50 3 11 28 96 139 -7.453 -2.966 -0.207 IL 50 50 3 50 3 13 31 98 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 12 29 97 140 -6.175 -0.020 1.984 -11.995 -4.560 -11.376 D 52 50 3 53 2 11 28 96 139 -8.565 -0.004 IL 53 53 3 53 2 12 29 97 140 -5.915 -0.024 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 28 96 139 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 69 112 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 69 112 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 51 94 -0.000 -14.123 -13.531 -14.171 [ MATP 15 ] 13 41 G C = = MP 58 57 1 62 6 2 3 51 94 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -13.565 -6.760 -14.871 0.082 -15.377 -11.864 -9.852 -14.685 -11.908 3.806 -3.879 -0.196 -10.163 -12.278 -12.222 -13.621 ML 59 57 1 62 6 1 1 49 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 49 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 45 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 50 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 50 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 40 G C = = MP 64 63 6 68 6 2 3 49 92 -5.657 -15.935 -0.029 -14.712 -14.991 -15.387 -13.930 -1.892 -16.260 -8.030 -15.548 -11.715 -9.850 -15.709 -11.922 3.901 -12.114 -8.486 -0.347 -12.183 -12.300 -15.355 ML 65 63 6 68 6 1 1 47 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 47 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 44 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 48 91 -7.166 -7.429 -0.025 -9.084 -9.860 -9.521 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 48 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 39 a a = = MP 70 69 6 74 6 2 3 47 90 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 2.724 -1.620 -12.287 0.888 0.533 -13.534 -7.502 -11.969 -12.040 -2.518 -12.514 -8.694 2.433 -6.204 -2.542 -11.000 ML 71 69 6 74 6 1 1 45 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 45 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 43 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 46 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 46 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 38 U G = = MP 76 75 6 80 4 2 3 45 88 -15.219 -15.426 -0.000 -13.840 -13.048 -13.330 -12.365 -9.566 -10.716 -12.510 -3.740 -0.340 -12.469 -9.538 -3.987 -11.733 2.295 -12.882 3.327 -3.040 ML 77 75 6 80 4 1 1 44 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 43 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 42 85 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 45 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 44 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - + - ML 82 81 6 84 3 1 2 43 86 -16.128 -0.000 -14.782 1.803 -2.391 -5.770 -1.727 D 83 81 6 84 3 0 0 41 84 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 43 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - A - + - ML 85 84 3 87 3 1 1 42 85 -16.128 -0.367 -2.154 1.374 -3.142 -0.607 -0.647 D 86 84 3 87 3 0 0 40 83 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 43 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - c - + - ML 88 87 3 90 3 1 1 41 84 -15.761 -1.668 -0.545 -0.148 0.742 -2.896 0.369 D 89 87 3 90 3 0 0 40 83 -15.396 -10.909 -0.001 IL 90 90 3 90 3 1 1 42 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - C - + - ML 91 90 3 93 3 1 1 41 84 -1.828 -3.291 -0.699 -0.540 1.173 -7.283 0.073 D 92 90 3 93 3 0 0 40 82 -17.145 -0.142 -3.419 IL 93 93 3 93 3 1 1 42 85 -0.914 -2.320 -1.894 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - A - + - ML 94 93 3 96 3 1 1 40 83 -15.693 -0.024 -5.898 1.617 -1.889 -1.697 -1.495 D 95 93 3 96 3 0 0 37 80 -15.609 -1.726 -0.519 IL 96 96 3 96 3 1 1 40 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - C - + - ML 97 96 3 99 3 1 1 39 82 -15.817 -0.431 -1.953 -0.761 1.040 -4.253 0.380 D 98 96 3 99 3 0 0 36 79 -15.185 -7.879 -0.006 IL 99 99 3 99 3 1 1 40 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - U - + - ML 100 99 3 102 3 1 1 38 81 -1.197 -0.827 -14.042 -1.069 0.391 -8.722 1.144 D 101 99 3 102 3 0 0 36 79 -1.996 -0.418 -10.624 IL 102 102 3 102 3 1 1 39 82 -0.619 -1.520 -13.578 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.989 -12.016 -5.048 -11.385 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.128 -0.022 -6.049 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 42 - A - + - ML 109 108 2 111 5 1 1 26 44 -6.452 -0.017 -14.855 -15.068 -15.959 1.721 -4.192 -0.780 -3.928 D 110 108 2 111 5 0 0 25 43 -9.514 -0.026 -8.775 -7.150 -7.062 IL 111 111 3 111 5 1 1 26 45 -5.559 -0.048 -7.238 -9.071 -8.344 0.000 0.000 0.000 0.000 [ MATP 30 ] 44 61 A U = = MP 112 111 3 116 6 2 2 25 43 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -1.436 -2.701 -5.750 3.561 -10.918 -5.336 -5.984 -3.123 -4.956 1.135 -10.471 -3.312 -2.789 -2.621 -0.277 -4.843 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 45 60 G C = = MP 118 117 6 122 6 2 2 23 41 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -9.965 -0.749 -9.783 2.369 -10.914 -6.329 -3.488 -6.179 -10.221 3.226 -3.217 -1.265 -2.844 -5.745 -4.485 -4.829 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 46 59 G C = = MP 124 123 6 128 6 2 2 21 39 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -11.994 1.418 -12.172 2.085 -14.233 -15.032 -9.642 -12.243 -11.764 3.044 -12.417 -6.039 -0.339 -13.334 -11.496 -4.964 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 47 58 G C = = MP 130 129 6 134 6 2 2 19 37 -15.996 -15.935 -0.000 -14.712 -14.991 -15.387 -4.462 -0.147 -14.293 -2.012 -15.247 -11.995 -9.850 -14.192 -11.896 3.853 -4.140 -1.752 -10.119 -12.360 -12.159 -12.981 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 48 57 C G = = MP 136 135 6 140 4 2 2 17 35 -15.219 -15.426 -0.000 -13.840 -13.048 -13.330 -12.365 -9.567 -3.831 -2.750 3.893 -4.363 -12.469 -9.538 -12.589 -11.734 -0.331 -12.882 -3.707 -11.271 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 49 - C - + - ML 142 141 6 144 3 1 1 14 32 -6.097 -0.021 -14.782 -12.735 2.000 -13.622 -11.111 D 143 141 6 144 3 0 0 17 36 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 14 33 -4.864 -0.058 -7.564 0.000 0.000 0.000 0.000 [ MATL 36 ] 51 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 52 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.128 -0.000 -14.782 -13.414 -12.033 -14.992 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 53 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.128 -0.000 -14.782 -12.735 2.000 -13.622 -11.111 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 54 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.128 -0.000 -14.782 2.000 -12.067 -11.313 -11.400 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 55 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.128 -0.000 -14.782 1.991 -12.024 -5.305 -11.388 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 56 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.912 -4.714 -9.981 -2.343 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 56 97 -16.128 -0.000 -14.782 IL 165 165 2 165 3 1 6 58 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 62 - A - + - ML 166 165 2 168 3 1 5 56 97 -16.128 -0.082 -4.182 1.647 -0.767 -5.807 -1.924 D 167 165 2 168 3 0 4 54 96 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 57 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 63 - A - + - ML 169 168 3 171 2 1 5 55 96 -16.702 -0.000 1.937 -5.924 -3.271 -4.318 D 170 168 3 171 2 0 4 54 95 -11.739 -0.000 IL 171 171 3 171 2 1 5 55 97 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 54 95 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.820 -14.123 -13.531 -0.007 [ MATP 48 ] 64 81 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 65 80 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 66 79 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 67 78 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 68 77 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 69 76 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.010 -18.708 -14.505 -15.187 -15.205 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 70 75 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.432 -15.113 -3.992 -0.094 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 71 - G - + - ML 216 215 6 218 3 1 1 13 32 -12.171 -0.001 -10.826 -6.783 -8.552 1.994 -7.544 D 217 215 6 218 3 0 0 8 26 -17.452 -12.965 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 72 - A - + - ML 219 218 3 221 3 1 1 12 30 -12.171 -0.001 -10.826 1.171 -6.075 -6.645 0.786 D 220 218 3 221 3 0 0 7 25 -17.452 -12.965 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 73 - A - + - ML 222 221 3 224 3 1 1 10 29 -12.171 -0.001 -10.826 1.995 -8.287 -7.547 -7.676 D 223 221 3 224 3 0 0 5 24 -17.452 -12.965 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 74 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.995 -8.287 -7.547 -7.676 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 48 89 -16.128 -0.000 -14.782 IL 230 230 2 230 3 1 1 50 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 82 - G - + - ML 231 230 2 233 3 1 4 48 89 -4.918 -0.049 -14.782 0.646 -10.657 1.262 -4.758 D 232 230 2 233 3 0 0 46 87 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 48 89 -5.967 -0.027 -8.667 0.000 0.000 0.000 0.000 [ MATL 62 ] 84 - C - + - ML 234 233 3 236 5 1 4 47 88 -15.062 -0.041 -14.877 -5.172 -15.981 -1.721 1.158 -5.136 0.523 D 235 233 3 236 5 0 0 45 86 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 47 88 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 85 109 A U = = MP 237 236 3 241 6 2 4 46 87 -15.956 -6.599 -0.015 -14.671 -14.951 -15.346 -11.997 -10.657 -12.193 3.550 -14.332 -15.482 -9.789 -12.235 -11.753 1.718 -12.422 -2.455 -0.298 -13.496 -11.620 -10.791 ML 238 236 3 241 6 1 1 44 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 2 42 83 -12.264 -10.993 -5.571 -0.056 -6.105 -9.184 -6.626 -6.011 -7.535 1.989 D 240 236 3 241 6 0 0 40 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 45 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 42 83 -5.421 -3.509 -0.188 -7.100 -8.206 0.000 0.000 0.000 0.000 [ MATP 64 ] 86 107 a u = = MP 243 242 6 247 6 2 3 44 85 -15.941 -15.880 -0.018 -14.657 -6.359 -15.332 -11.904 -2.719 -12.069 2.902 -3.805 -14.782 -9.470 -12.159 -11.689 2.721 -2.042 -0.924 -9.458 -13.165 -11.335 -0.099 ML 244 242 6 247 6 1 2 40 82 -12.149 -12.495 -1.882 -0.460 -12.344 -9.874 -5.947 1.588 -0.072 -5.285 MR 245 242 6 247 6 1 1 41 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 38 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 43 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 43 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 87 106 G C = = MP 249 248 6 253 6 2 2 42 83 -15.939 -6.264 -0.050 -14.654 -5.815 -8.151 -3.644 -1.478 -12.175 1.772 -14.296 -15.230 -9.738 -12.223 -11.731 3.493 -12.394 -4.028 -9.674 -13.423 -11.577 -0.282 ML 250 248 6 253 6 1 1 37 78 -11.705 -12.051 -6.766 -6.460 -11.901 -0.031 -6.596 -5.984 -7.502 1.989 MR 251 248 6 253 6 1 1 37 78 -11.076 -9.805 -5.714 -9.784 -4.917 -0.081 -4.792 -4.370 -5.609 1.962 D 252 248 6 253 6 0 0 37 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 41 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 40 81 -5.703 -1.678 -9.214 -0.591 -8.488 0.000 0.000 0.000 0.000 [ MATP 66 ] 88 104 A U = = MP 255 254 6 259 6 2 2 40 81 -15.894 -15.833 -0.228 -10.250 -4.190 -3.462 -6.048 -1.778 -10.036 3.349 -4.802 -10.840 -0.259 -9.728 -2.877 0.851 -10.468 -4.603 1.279 -10.161 -2.286 -6.370 ML 256 254 6 259 6 1 1 38 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 38 79 -12.191 -10.920 -1.392 -10.898 -1.323 -2.197 -3.999 -4.797 1.334 0.464 D 258 254 6 259 6 0 0 35 77 -15.472 -14.170 -9.967 -10.649 -10.667 -0.003 IL 259 259 5 259 6 1 1 40 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 39 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 89 103 G C = = MP 261 260 6 265 4 2 2 38 80 -14.905 -8.140 -0.233 -2.780 -2.156 -2.773 -11.331 -0.230 -2.230 -5.171 -1.689 -11.943 -2.904 3.815 -11.171 -7.185 -7.618 -10.704 -9.398 -10.292 ML 262 260 6 265 4 1 1 36 77 -4.649 -4.831 -1.397 -0.875 1.379 -1.387 -1.114 -0.851 MR 263 260 6 265 4 1 1 36 77 -11.421 -2.398 -1.154 -1.471 -2.057 -0.054 -5.590 1.473 D 264 260 6 265 4 0 0 35 77 -12.532 -12.213 -0.817 -1.211 IL 265 265 5 265 4 1 1 38 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 33 75 -4.865 -2.880 -0.269 0.000 0.000 0.000 0.000 [ MATL 68 ] 90 - U - + - ML 267 266 6 269 3 1 2 37 78 -4.483 -0.066 -14.442 -0.268 -2.533 -4.801 1.566 D 268 266 6 269 3 0 0 19 60 -15.302 -0.813 -1.216 IL 269 269 3 269 3 1 1 43 84 -0.643 -1.479 -10.210 0.000 0.000 0.000 0.000 [ MATL 69 ] 94 - u - + - ML 270 269 3 272 3 1 1 13 31 -15.992 -0.027 -5.760 -2.127 -2.183 0.777 0.878 D 271 269 3 272 3 0 0 12 31 -14.088 -0.077 -4.272 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 95 - A - + - ML 273 272 3 275 3 1 1 11 30 -16.098 -0.005 -8.241 1.631 -0.659 -3.546 -2.436 D 274 272 3 275 3 0 0 12 31 -12.013 -0.519 -1.729 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 96 - A - + - ML 276 275 3 278 3 1 1 10 28 -5.382 -0.085 -4.903 1.662 -2.386 -0.956 -2.954 D 277 275 3 278 3 0 0 8 27 -10.879 -0.039 -5.271 IL 278 278 3 278 3 1 1 9 28 -5.514 -0.037 -8.214 0.000 0.000 0.000 0.000 [ MATL 72 ] 98 - A - + - ML 279 278 3 281 3 1 1 8 27 -16.080 -0.063 -4.546 1.761 -2.172 -6.127 -1.420 D 280 278 3 281 3 0 0 10 28 -12.645 -8.158 -0.005 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 99 - A - + - ML 282 281 3 284 3 1 1 6 11 -5.435 -0.137 -3.893 1.251 -0.427 -1.054 -1.339 D 283 281 3 284 3 0 0 3 8 -13.807 -6.598 -0.015 IL 284 284 3 284 3 1 1 6 11 -5.372 -0.041 -8.072 0.000 0.000 0.000 0.000 [ MATL 74 ] 101 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.569 0.273 -5.382 1.378 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Trp-2nd-align LENG 90 MAXL 166 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Tue Sep 22 15:34:35 2015 COM [1] cmbuild --hand --enone Trp_vert.cm Trp-2nd-align.sto NSEQ 1086 EFFN 8.554802 CKSUM 2811790383 STATS LOCAL MSV -8.9598 0.71865 STATS LOCAL VITERBI -9.7564 0.71865 STATS LOCAL FORWARD -3.6942 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.18668 1.46326 1.49201 1.43393 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 0.00000 * 1 0.10316 4.66887 2.60861 4.20001 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 2 1.81977 2.98336 0.34886 2.50317 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 3 1.02884 2.73206 0.69317 2.55743 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 4 1.09265 2.65509 0.69709 2.33977 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.04069 3.47549 4.71870 0.50209 0.92955 1.09861 0.40547 5 0.94661 2.40432 0.87751 2.24618 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 6 2.57666 0.68326 2.38892 1.11696 7 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02811 3.97449 4.71870 0.77619 0.61647 1.09861 0.40547 7 5.05140 3.82583 5.04623 0.03525 9 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01846 4.71870 4.67132 1.46634 0.26236 1.09861 0.40547 8 3.49957 2.68798 4.01260 0.12365 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01802 4.71826 4.71826 1.46634 0.26236 1.11465 0.39754 9 0.04497 4.55085 3.85629 4.40038 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.02942 3.90903 4.71826 0.73396 0.65393 1.06728 0.42151 10 2.34333 3.64635 0.16500 3.50624 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 11 2.82007 3.79495 0.14272 2.97763 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.03446 3.69091 4.71870 0.60711 0.78729 1.09861 0.40547 12 1.11463 1.61625 1.87876 1.13774 16 a = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 13 3.11562 1.86795 2.90654 0.29230 17 U = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 14 0.24378 2.60665 3.14993 2.30556 18 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 15 0.62414 2.38497 1.77825 1.59330 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.22159 4.71870 1.66164 1.46634 0.26236 1.09861 0.40547 16 1.40350 1.09036 2.33624 1.13482 20 c + - _ 1.38629 1.38629 1.38629 1.38629 0.78520 4.51915 0.62909 1.46634 0.26236 3.14695 0.04393 17 1.45892 1.04221 2.22736 1.18082 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.65483 1.90673 1.10291 0.69498 0.69132 0.12486 2.14238 18 0.46920 2.21363 2.18737 1.87741 26 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07130 4.52305 2.84795 1.46634 0.26236 1.08551 0.41208 19 1.67482 0.87235 2.64805 1.12732 27 c + - _ 1.38629 1.38629 1.38629 1.38629 0.18506 4.54873 1.84285 1.46634 0.26236 1.34302 0.30253 20 1.72716 1.25577 2.60235 0.76948 28 u + - _ 1.38629 1.38629 1.38629 1.38629 0.49582 0.96983 4.44146 1.00846 0.45379 0.06870 2.71214 21 0.04056 4.62390 3.99196 4.46766 37 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 22 1.23635 3.12450 0.55886 2.36726 38 G = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 23 0.80920 1.98809 1.56139 1.57030 39 a = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 24 3.07298 0.15274 3.61629 2.68121 40 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 25 3.71273 0.22800 3.38411 1.92721 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03044 4.71870 3.86053 1.46634 0.26236 1.09861 0.40547 26 0.29214 3.04677 1.92506 2.81419 42 A + - , 1.38629 1.38629 1.38629 1.38629 0.02760 4.00716 4.70649 0.80665 0.59123 0.61404 0.77906 27 0.87910 1.99040 1.35484 1.65959 44 a = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 28 1.29192 2.71975 0.54513 2.53072 45 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 29 1.15473 2.82707 0.62909 2.37949 46 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 30 2.09492 3.21471 0.23566 3.06387 47 G = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 31 4.14711 0.11267 3.97297 2.63212 48 C = - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 32 4.59039 0.03686 4.99446 3.94955 49 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03005 3.87872 4.71870 0.71475 0.67200 1.09861 0.40547 33 4.19130 3.94093 4.74427 0.04422 51 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 34 4.19130 3.94093 4.74427 0.04422 52 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 35 4.59039 0.03686 4.99446 3.94955 53 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 36 0.02888 4.86428 4.48153 4.66375 54 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 37 0.03875 4.65669 4.05278 4.49745 55 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 38 0.12873 3.37615 3.59549 2.82745 56 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 39 2.80134 3.90848 0.10727 3.86711 57 G = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 40 3.28125 0.24656 2.99158 2.03467 58 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 41 2.58328 0.55104 2.63400 1.28614 59 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 42 2.81834 0.60034 2.49333 1.17430 60 C = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 43 1.94355 1.44506 1.69882 0.82514 61 u = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 44 0.36126 1.96032 2.98355 2.19124 62 A + - , 1.38629 1.38629 1.38629 1.38629 0.06419 4.71870 2.93284 1.46634 0.26236 1.09861 0.40547 45 0.10992 3.64171 3.11767 3.39251 63 A + - , 1.38629 1.38629 1.38629 1.38629 1.67763 4.67337 0.21835 1.46634 0.26236 2.07502 0.13416 46 1.80805 1.30439 1.07542 1.49819 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 47 1.80293 1.30596 1.07732 1.49717 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 48 1.80052 1.30670 1.07822 1.49668 66 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 49 1.79943 1.30703 1.07862 1.49646 67 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 50 1.79900 1.30716 1.07878 1.49638 68 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 51 1.79888 1.30720 1.07883 1.49635 69 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 52 1.79892 1.30719 1.07881 1.49636 70 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.63787 0.07420 53 1.56803 2.22816 0.65110 1.81801 71 G + - _ 1.38629 1.38629 1.38629 1.38629 0.07508 3.31971 3.31971 1.46634 0.26236 4.47015 0.01151 54 1.00260 1.80390 1.86309 1.16081 72 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07508 3.31971 3.31971 1.46634 0.26236 4.47015 0.01151 55 0.54053 2.16914 1.99108 1.79134 73 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07508 3.31971 3.31971 1.46634 0.26236 4.47015 0.01151 56 0.54053 2.16914 1.99108 1.79134 74 A + - _ 1.38629 1.38629 1.38629 1.38629 0.32398 3.31971 1.42474 1.46634 0.26236 4.47015 0.01151 57 1.73019 1.22024 1.16213 1.53819 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 58 1.73011 1.22027 1.16216 1.53817 76 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 59 1.73012 1.22026 1.16215 1.53817 77 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 60 1.73029 1.22019 1.16209 1.53822 78 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 61 1.73074 1.22000 1.16193 1.53835 79 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 62 1.73168 1.21960 1.16158 1.53863 80 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53284 0.01081 63 1.73350 1.21882 1.16092 1.53917 81 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02173 3.83969 64 0.98608 3.43289 0.60808 2.99022 82 G + - , 1.38629 1.38629 1.38629 1.38629 0.04549 3.33686 4.71870 0.44360 1.02644 1.09861 0.40547 65 2.06954 0.73391 3.01348 1.06535 84 c + - , 1.38629 1.38629 1.38629 1.38629 0.04099 4.71870 3.46615 1.46634 0.26236 1.09861 0.40547 66 0.54179 3.33209 1.18496 2.56637 85 A = - < 1.38629 1.38629 1.38629 1.38629 0.01843 4.69613 4.69613 1.46634 0.26236 0.45207 1.01146 67 1.14232 2.54082 0.71638 2.17505 86 g = - < 1.38629 1.38629 1.38629 1.38629 0.02770 4.71870 3.99580 1.46634 0.26236 1.09861 0.40547 68 1.48842 2.79253 0.48220 2.34778 87 G = - < 1.38629 1.38629 1.38629 1.38629 0.06655 4.70919 2.89369 1.46634 0.26236 1.40128 0.28274 69 0.99466 1.80209 1.43208 1.48551 88 a = - < 1.38629 1.38629 1.38629 1.38629 0.14498 4.66172 2.07536 1.46634 0.26236 1.57373 0.23227 70 1.81778 2.45081 0.40679 2.45798 89 G = - < 1.38629 1.38629 1.38629 1.38629 0.14501 4.54801 2.08426 1.46634 0.26236 0.68753 0.69880 71 1.60249 2.27569 2.73800 0.46016 90 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05731 3.10225 4.53306 1.11638 0.39670 0.62075 0.77120 72 1.81211 2.16203 1.09946 0.94533 94 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03438 4.64302 3.72269 1.46634 0.26236 0.24220 1.53664 73 0.37893 1.91227 2.75851 2.26069 95 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02100 4.70148 4.44793 1.46634 0.26236 0.73821 0.65002 74 0.36239 2.52250 2.01692 2.40055 96 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06623 3.56639 3.32911 0.54786 0.86318 0.73214 0.65562 75 0.28246 2.49256 3.07214 2.14515 98 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05399 4.69171 3.13766 1.46634 0.26236 1.78886 0.18290 76 0.71850 1.70495 1.92835 1.68553 99 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09500 3.58262 2.76737 0.58287 0.81711 2.21608 0.11545 77 2.25374 1.30709 2.97928 0.55589 101 U + - _ 1.38629 1.38629 1.38629 1.38629 0.12911 3.76247 2.32386 0.71460 0.67214 0.42801 1.05499 78 2.47681 0.48517 2.32986 1.59413 103 C = - > 1.38629 1.38629 1.38629 1.38629 0.02021 4.60457 4.60457 1.46634 0.26236 0.48881 0.95026 79 1.64555 1.53703 1.60488 0.93864 104 u = - > 1.38629 1.38629 1.38629 1.38629 0.02937 3.92701 4.68390 0.76778 0.62370 1.06088 0.42488 80 2.83675 0.52888 2.59342 1.28244 106 C = - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69643 4.69643 1.46634 0.26236 1.69868 0.20202 81 2.61871 0.82213 2.31392 0.94486 107 c = - > 1.38629 1.38629 1.38629 1.38629 0.01842 4.69643 4.69643 1.46634 0.26236 0.45547 1.00553 82 2.64173 1.31534 3.08403 0.48677 109 U = - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 83 0.04096 5.24122 3.63622 4.76954 110 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 84 1.23310 2.57908 0.62403 2.33317 111 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 85 2.40068 0.91684 2.19808 0.91993 112 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 86 2.54976 0.75409 2.47929 1.00060 113 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 87 2.86949 0.70386 2.53590 0.99584 114 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 88 2.59132 0.40230 2.79601 1.63350 115 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 89 4.58653 2.88522 4.47530 0.08058 116 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01801 4.71870 4.71870 1.46634 0.26236 1.09861 0.40547 90 2.79727 3.54821 0.16354 2.79497 117 G + - : 1.38629 1.38629 1.38629 1.38629 0.00905 4.70973 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-ns.cm0000644000543100007160000016433712710016425017077 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME all-042516 STATES 274 NODES 92 CLEN 90 W 663 ALPH RNA RF yes CONS yes MAP yes DATE Tue Apr 26 01:33:59 2016 COM [1] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/all-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/all-042516.sto COM [2] cmcalibrate --hfile all-ns.hfile --sfile all-ns.sfile --qqfile all-ns.qqfile --ffile all-ns.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/all-ns-042516.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 109245 EFFN 109245.000000 CKSUM 4144942527 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.3190 0.71765 ECMLC 0.61801 -12.12783 -1.50763 1600000 850360 0.001411 ECMGC 0.33080 -17.81727 -5.94984 1600000 20277 0.019727 ECMLI 0.54352 -12.02923 -0.43394 1600000 654938 0.001832 ECMGI 0.34782 -13.48008 -2.30999 1600000 19471 0.020543 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 663 1409 -21.869 -22.076 -0.046 -4.982 IL 1 1 2 1 4 27 50 666 1413 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 27 50 666 1412 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - G - = - ML 3 2 3 5 3 29 51 665 1411 -7.935 -0.016 -7.212 -3.501 -2.031 1.784 -2.169 D 4 2 3 5 3 23 45 660 1406 -25.043 -3.496 -0.134 IL 5 5 3 5 3 29 51 665 1411 -14.400 -0.000 -22.043 0.000 0.000 0.000 0.000 [ MATL 2 ] 4 - G - = - ML 6 5 3 8 3 28 50 664 1410 -7.577 -0.022 -6.670 -3.388 0.651 1.037 -1.826 D 7 5 3 8 3 23 45 660 1406 -25.204 -2.774 -0.228 IL 8 8 3 8 3 29 51 664 1411 -1.478 -0.641 -23.038 0.000 0.000 0.000 0.000 [ MATL 3 ] 7 - g - = - ML 9 8 3 11 3 28 49 663 1409 -7.478 -0.013 -8.093 -0.486 0.443 0.501 -0.966 D 10 8 3 11 3 23 45 659 1405 -25.369 -3.156 -0.172 IL 11 11 3 11 3 28 50 664 1410 -1.182 -0.839 -23.327 0.000 0.000 0.000 0.000 [ MATL 4 ] 10 - g - = - ML 12 11 3 14 3 27 48 662 1408 -5.667 -0.036 -7.606 -1.475 0.412 0.838 -0.938 D 13 11 3 14 3 23 45 659 1405 -25.335 -2.448 -0.292 IL 14 14 3 14 3 28 49 663 1409 -0.909 -1.097 -25.397 0.000 0.000 0.000 0.000 [ MATL 5 ] 15 - c - = - ML 15 14 3 17 3 26 47 661 1407 -20.005 -0.015 -6.557 -0.476 0.550 0.447 -1.139 D 16 14 3 17 3 23 45 658 1405 -25.252 -1.625 -0.566 IL 17 17 3 17 3 27 49 664 1410 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 16 - g - = - ML 18 17 3 20 3 25 47 660 1406 -5.842 -0.026 -12.529 -0.632 0.313 0.453 -0.426 D 19 17 3 20 3 22 44 658 1404 -25.186 -2.431 -0.296 IL 20 20 3 20 3 25 47 660 1406 -1.747 -0.510 -24.642 0.000 0.000 0.000 0.000 [ MATL 7 ] 20 - G - = - ML 21 20 3 23 3 24 46 659 1405 -5.965 -0.029 -8.051 0.039 -2.407 1.239 -1.240 D 22 20 3 23 3 22 44 657 1404 -24.899 -0.514 -1.738 IL 23 23 3 23 3 25 47 662 1409 -0.373 -2.135 -26.153 0.000 0.000 0.000 0.000 [ MATL 8 ] 27 - U - + - ML 24 23 3 26 3 23 45 658 1404 -5.454 -0.035 -9.675 -2.710 -4.500 -3.980 1.903 D 25 23 3 26 3 21 43 657 1403 -23.673 -0.063 -4.550 IL 26 26 3 26 3 24 45 659 1405 -1.118 -0.891 -25.444 0.000 0.000 0.000 0.000 [ MATL 9 ] 32 - A - + - ML 27 26 3 29 3 22 44 657 1403 -5.122 -0.063 -6.167 1.157 -2.937 0.599 -2.995 D 28 26 3 29 3 19 40 655 1401 -20.851 -0.388 -2.083 IL 29 29 3 29 3 23 44 657 1403 -3.727 -0.113 -25.014 0.000 0.000 0.000 0.000 [ MATL 10 ] 35 - G - = - ML 30 29 3 32 3 22 43 656 1402 -7.468 -0.020 -6.990 -3.411 -2.072 1.833 -3.253 D 31 29 3 32 3 17 38 652 1398 -23.897 -5.837 -0.025 IL 32 32 3 32 3 23 44 656 1402 -1.458 -0.653 -23.189 0.000 0.000 0.000 0.000 [ MATL 11 ] 38 - C - = - ML 33 32 3 35 3 22 42 655 1401 -5.661 -0.033 -8.532 -3.309 1.503 -2.486 -0.174 D 34 32 3 35 3 17 38 651 1398 -24.506 -3.464 -0.137 IL 35 35 3 35 3 22 42 655 1401 -2.196 -0.355 -24.688 0.000 0.000 0.000 0.000 [ MATL 12 ] 41 - U - = - ML 36 35 3 38 3 21 41 654 1400 -8.466 -0.006 -9.991 -2.188 -0.089 -0.322 1.029 D 37 35 3 38 3 17 38 651 1397 -24.549 -1.868 -0.462 IL 38 38 3 38 3 21 41 654 1400 -13.882 -0.000 -21.526 0.000 0.000 0.000 0.000 [ MATL 13 ] 43 - c - = - ML 39 38 3 41 3 20 40 653 1399 -6.224 -0.024 -8.464 -1.962 0.934 -0.325 0.049 D 40 38 3 41 3 17 37 651 1397 -24.170 -0.488 -1.800 IL 41 41 3 41 3 21 42 657 1403 -0.322 -2.322 -26.097 0.000 0.000 0.000 0.000 [ MATL 14 ] 49 - A - + - ML 42 41 3 44 3 19 39 652 1398 -20.048 -0.005 -8.156 1.864 -3.984 -3.942 -2.107 D 43 41 3 44 3 16 36 648 1394 -23.012 -3.641 -0.121 IL 44 44 3 44 3 20 41 655 1401 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 50 - G - + - ML 45 44 3 47 3 18 38 651 1397 -8.275 -0.026 -6.063 -0.449 -2.552 1.598 -3.848 D 46 44 3 47 3 15 36 648 1394 -23.466 -8.231 -0.005 IL 47 47 3 47 3 18 38 651 1397 -14.090 -0.000 -21.734 0.000 0.000 0.000 0.000 [ MATL 16 ] 52 - U - + - ML 48 47 3 50 3 17 37 650 1396 -20.022 -0.778 -1.263 -1.644 0.580 -2.958 1.040 D 49 47 3 50 3 15 36 648 1394 -24.724 -14.758 -0.000 IL 50 50 3 50 3 19 39 654 1400 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 53 - U - + - ML 51 50 3 53 3 17 37 649 1395 -1.316 -0.822 -4.945 -2.978 0.784 -4.218 1.068 D 52 50 3 53 3 15 36 648 1394 -28.812 -0.044 -5.066 IL 53 53 3 53 3 17 37 649 1395 -3.722 -0.114 -28.008 0.000 0.000 0.000 0.000 [ MATL 18 ] 58 - G - + - ML 54 53 3 56 3 16 36 648 1394 -20.013 -0.002 -9.598 -4.460 -6.556 1.959 -4.184 D 55 53 3 56 3 13 33 644 1390 -25.029 -2.874 -0.212 IL 56 56 3 56 3 17 37 651 1398 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 59 - G - + - ML 57 56 3 59 3 15 35 647 1393 -20.018 -0.016 -6.463 -4.255 -4.283 1.937 -3.904 D 58 56 3 59 3 12 32 643 1390 -24.883 -3.260 -0.159 IL 59 59 3 59 3 16 37 650 1397 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 60 - U - + - ML 60 59 3 62 3 14 34 646 1392 -0.688 -1.400 -12.696 -0.920 -0.919 -2.714 1.481 D 61 59 3 62 3 12 32 643 1389 -25.244 -0.036 -5.352 IL 62 62 3 62 3 15 34 646 1392 -0.602 -1.552 -30.836 0.000 0.000 0.000 0.000 [ MATL 21 ] 87 - A - + - ML 63 62 3 65 3 13 33 643 1389 -6.514 -0.037 -6.090 1.727 -3.202 -1.273 -2.585 D 64 62 3 65 3 10 29 641 1387 -20.110 -0.498 -1.775 IL 65 65 3 65 3 14 34 645 1392 -0.534 -1.692 -25.201 0.000 0.000 0.000 0.000 [ MATL 22 ] 92 - G - = - ML 66 65 3 68 3 12 32 642 1388 -8.358 -0.007 -9.213 0.259 -3.617 1.149 -0.990 D 67 65 3 68 3 8 28 639 1385 -23.963 -3.314 -0.153 IL 68 68 3 68 3 12 32 642 1388 -14.001 -0.000 -21.645 0.000 0.000 0.000 0.000 [ MATL 23 ] 94 - a - = - ML 69 68 3 71 3 11 31 641 1387 -7.099 -0.011 -10.959 0.994 -0.313 -0.003 -2.283 D 70 68 3 71 3 8 28 639 1385 -23.978 -2.108 -0.381 IL 71 71 3 71 3 11 31 641 1387 -15.260 -0.000 -22.903 0.000 0.000 0.000 0.000 [ MATL 24 ] 96 - G - = - ML 72 71 3 74 3 10 30 640 1386 -8.466 -0.010 -7.900 -0.317 -2.475 1.531 -2.971 D 73 71 3 74 3 8 28 638 1384 -23.657 -3.272 -0.158 IL 74 74 3 74 3 10 30 640 1386 -13.897 -0.000 -21.541 0.000 0.000 0.000 0.000 [ MATL 25 ] 98 - C - = - ML 75 74 3 77 3 9 29 639 1385 -6.024 -0.025 -9.001 -3.379 1.589 -2.057 -0.610 D 76 74 3 77 3 8 28 638 1384 -23.965 -0.006 -8.037 IL 77 77 3 77 3 11 31 646 1392 -0.222 -2.807 -26.786 0.000 0.000 0.000 0.000 [ MATL 26 ] 106 - G - + - ML 78 77 3 80 3 9 28 638 1384 -5.776 -0.027 -11.156 0.475 -2.329 1.094 -1.857 D 79 77 3 80 3 3 22 636 1382 -21.045 -0.348 -2.222 IL 80 80 3 80 3 9 29 639 1385 -1.360 -0.712 -24.958 0.000 0.000 0.000 0.000 [ MATL 27 ] 110 - c - = - ML 81 80 3 83 3 8 28 637 1383 -6.228 -0.023 -8.639 -1.754 0.968 -0.372 -0.037 D 82 80 3 83 3 1 20 632 1378 -19.845 -6.038 -0.022 IL 83 83 3 83 3 9 29 639 1385 -0.640 -1.482 -25.278 0.000 0.000 0.000 0.000 [ MATL 28 ] 115 - c - = - ML 84 83 3 86 3 8 27 636 1382 -8.369 -0.006 -9.521 -1.487 0.853 -0.499 0.176 D 85 83 3 86 3 1 20 632 1378 -21.805 -3.088 -0.180 IL 86 86 3 86 3 8 28 636 1382 -14.007 -0.000 -21.650 0.000 0.000 0.000 0.000 [ MATL 29 ] 117 - g - = - ML 87 86 3 89 3 7 27 635 1381 -8.280 -0.013 -7.501 -0.451 -0.388 0.874 -0.575 D 88 86 3 89 3 1 20 632 1378 -22.169 -2.585 -0.263 IL 89 89 3 89 3 8 28 635 1381 -14.095 -0.000 -21.739 0.000 0.000 0.000 0.000 [ MATL 30 ] 119 - G - = - ML 90 89 3 92 3 7 27 634 1380 -7.539 -0.010 -9.119 -4.875 -0.567 1.651 -2.736 D 91 89 3 92 3 1 20 631 1378 -23.244 -1.095 -0.910 IL 92 92 3 92 3 9 28 635 1381 -1.442 -0.662 -23.134 0.000 0.000 0.000 0.000 [ MATL 31 ] 122 - a - = - ML 93 92 3 95 3 8 27 633 1379 -6.979 -0.012 -11.264 0.518 0.483 -0.276 -1.538 D 94 92 3 95 3 1 20 630 1376 -22.786 -0.837 -1.184 IL 95 95 3 95 3 9 28 636 1382 -0.456 -1.884 -24.921 0.000 0.000 0.000 0.000 [ MATL 32 ] 127 - C - + - ML 96 95 3 98 3 8 26 632 1378 -6.627 -0.015 -13.103 -3.500 1.542 -6.690 -0.014 D 97 95 3 98 3 1 19 627 1373 -21.789 -2.027 -0.406 IL 98 98 3 98 3 8 26 633 1379 -0.985 -1.015 -24.408 0.000 0.000 0.000 0.000 [ MATL 33 ] 131 - U - + - ML 99 98 3 101 3 7 25 631 1377 -20.055 -0.000 -12.640 -5.073 -3.370 -5.236 1.944 D 100 98 3 101 3 1 18 626 1372 -21.447 -1.375 -0.703 IL 101 101 3 101 3 5 24 634 1380 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 132 - c - * - ML 102 101 3 104 3 6 24 630 1376 -20.057 -0.001 -10.810 -0.118 0.082 0.056 -0.028 D 103 101 3 104 3 1 18 623 1369 -20.878 -1.409 -0.682 IL 104 104 3 104 3 4 23 633 1379 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 133 - c - * - ML 105 104 3 107 3 5 23 629 1375 -20.057 -0.000 -16.603 -0.084 0.137 -0.055 -0.007 D 106 104 3 107 3 1 17 619 1366 -20.786 -2.756 -0.231 IL 107 107 3 107 3 4 23 632 1378 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 134 - a - * - ML 108 107 3 110 3 4 22 628 1374 -20.057 -0.000 -18.363 0.084 -0.080 0.040 -0.051 D 109 107 3 110 3 1 17 618 1364 -20.565 -0.328 -2.298 IL 110 110 3 110 3 3 21 631 1377 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 135 - A - + - ML 111 110 3 113 3 3 21 627 1373 -2.577 -0.265 -12.525 1.512 -5.544 0.147 -5.640 D 112 110 3 113 3 0 15 304 931 -18.282 -5.528 -0.032 IL 113 113 3 113 3 6 24 698 1444 -0.036 -5.358 -32.805 0.000 0.000 0.000 0.000 [ MATL 38 ] 213 - A - + - ML 114 113 3 116 3 2 20 306 670 -7.846 -0.025 -6.289 1.617 -1.335 -3.471 -1.167 D 115 113 3 116 3 0 15 303 668 -18.923 -1.390 -0.693 IL 116 116 3 116 3 6 20 306 670 -14.534 -0.000 -22.178 0.000 0.000 0.000 0.000 [ MATL 39 ] 215 - u - = - ML 117 116 3 119 3 5 19 305 669 -8.476 -0.004 -11.877 -1.704 -0.394 0.547 0.556 D 118 116 3 119 3 0 14 302 666 -23.766 -3.550 -0.129 IL 119 119 3 119 3 5 19 305 669 -13.885 -0.000 -21.529 0.000 0.000 0.000 0.000 [ MATL 40 ] 217 - C - = - ML 120 119 3 122 3 4 18 304 668 -6.697 -0.015 -11.199 -6.196 1.588 -0.368 -2.286 D 121 119 3 122 3 0 14 301 666 -23.669 -5.028 -0.045 IL 122 122 3 122 3 5 19 305 670 -0.804 -1.226 -24.537 0.000 0.000 0.000 0.000 [ MATL 41 ] 221 - c - = - ML 123 122 3 125 3 4 17 303 667 -8.439 -0.005 -11.300 -0.712 0.853 -0.272 -0.406 D 124 122 3 125 3 0 14 301 666 -23.674 -4.706 -0.056 IL 125 125 3 125 3 4 17 303 667 -13.924 -0.000 -21.568 0.000 0.000 0.000 0.000 [ MATL 42 ] 223 - g - = - ML 126 125 3 128 3 3 16 302 666 -7.287 -0.010 -12.523 0.034 -0.702 0.906 -1.034 D 127 125 3 128 3 0 14 301 666 -23.665 -2.069 -0.393 IL 128 128 3 128 3 3 17 302 667 -1.803 -0.487 -23.207 0.000 0.000 0.000 0.000 [ MATL 43 ] 226 - G - = - ML 129 128 3 131 3 2 15 301 665 -20.045 -0.000 -14.445 -0.237 -1.666 1.057 -0.403 D 130 128 3 131 3 0 14 302 666 -23.298 -2.029 -0.405 IL 131 131 3 131 3 2 16 304 669 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 227 - a - + - ML 132 131 3 134 3 1 14 300 664 -20.049 -0.244 -2.685 0.822 -1.327 -0.586 0.223 D 133 131 3 134 3 0 14 302 667 -22.902 -9.199 -0.002 IL 134 134 3 134 3 2 15 303 667 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 228 - G - + - ML 135 134 3 137 3 1 13 298 663 -5.749 -3.242 -0.192 -1.676 -1.910 1.644 -1.755 D 136 134 3 137 3 0 14 302 667 -27.395 -0.174 -3.137 IL 137 137 3 137 3 3 18 304 669 -1.578 -0.588 -24.610 0.000 0.000 0.000 0.000 [ MATL 46 ] 232 - G - = - ML 138 137 3 140 3 2 16 303 668 -18.044 -0.002 -9.797 -0.499 -1.105 1.347 -1.816 D 139 137 3 140 3 0 12 296 660 -29.615 -7.088 -0.011 IL 140 140 3 140 3 2 17 307 671 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 233 - u - = - ML 141 140 3 143 3 1 15 302 667 -18.074 -0.018 -6.315 -1.334 -0.390 0.409 0.597 D 142 140 3 143 3 0 12 296 660 -29.605 -17.258 -0.000 IL 143 143 3 143 3 2 16 306 670 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 234 - c - = - ML 144 143 3 146 3 1 14 301 666 -4.347 -0.334 -2.666 -0.287 0.606 0.279 -1.169 D 145 143 3 146 3 0 12 296 660 -29.611 -16.798 -0.000 IL 146 146 3 146 3 2 15 302 667 -2.181 -0.360 -24.034 0.000 0.000 0.000 0.000 [ MATL 49 ] 237 - C - = - ML 147 146 3 149 3 1 14 301 665 -17.809 -0.512 -1.742 -3.460 1.054 0.516 -1.314 D 148 146 3 149 3 0 12 296 660 -29.685 -13.003 -0.000 IL 149 149 3 149 3 2 16 306 671 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 238 - G - = - ML 150 149 3 152 3 1 14 301 666 -4.704 -0.401 -2.291 -1.734 0.055 1.130 -1.082 D 151 149 3 152 3 0 12 296 660 -29.795 -12.112 -0.000 IL 152 152 3 152 3 2 15 303 668 -1.171 -0.847 -23.407 0.000 0.000 0.000 0.000 [ MATL 51 ] 241 - c - = - ML 153 152 3 155 3 1 14 301 666 -3.772 -0.881 -1.381 -1.530 0.595 0.361 -0.220 D 154 152 3 155 3 0 12 296 660 -29.845 -15.056 -0.000 IL 155 155 3 155 3 4 18 304 669 -1.537 -0.609 -23.773 0.000 0.000 0.000 0.000 [ MATL 52 ] 244 - C - = - ML 156 155 3 158 3 3 17 302 667 -16.272 -0.000 -16.272 -2.416 1.260 -0.375 -0.629 D 157 155 3 158 3 0 12 296 660 -29.916 -2.509 -0.279 IL 158 158 3 158 3 2 18 306 671 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 245 - g - + - ML 159 158 3 161 3 2 16 301 666 -17.972 -0.002 -9.727 -1.482 -0.791 0.858 0.323 D 160 158 3 161 3 0 12 294 659 -29.638 -9.276 -0.002 IL 161 161 3 161 3 2 17 305 670 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 246 - u - + - ML 162 161 3 164 3 2 15 300 665 -17.978 -0.005 -8.258 0.306 0.239 -1.656 0.340 D 163 161 3 164 3 0 12 294 659 -29.636 -10.435 -0.001 IL 164 164 3 164 3 2 16 304 669 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 247 - A - + - ML 165 164 3 167 3 1 14 299 664 -2.294 -0.713 -2.426 1.261 -1.168 -1.757 -0.213 D 166 164 3 167 3 0 12 294 659 -29.636 -10.358 -0.001 IL 167 167 3 167 3 2 16 302 667 -0.393 -2.068 -27.716 0.000 0.000 0.000 0.000 [ MATL 56 ] 267 - A - + - ML 168 167 3 170 3 1 13 298 663 -1.891 -2.741 -0.784 1.213 -0.958 -0.401 -1.287 D 169 167 3 170 3 0 12 294 659 -29.716 -7.984 -0.006 IL 170 170 3 170 3 2 16 301 665 -3.780 -0.109 -25.868 0.000 0.000 0.000 0.000 [ MATL 57 ] 270 - G - = - ML 171 170 3 173 3 1 15 300 664 -16.485 -0.103 -3.862 -0.724 -0.131 1.135 -1.810 D 172 170 3 173 3 0 12 294 659 -29.898 -4.382 -0.071 IL 173 173 3 173 3 2 18 304 668 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 271 - G - = - ML 174 173 3 176 3 2 17 299 664 -3.756 -0.114 -9.061 -0.573 -0.447 1.097 -1.133 D 175 173 3 176 3 0 12 294 659 -29.837 -5.018 -0.045 IL 176 176 3 176 3 2 17 299 664 -15.592 -0.000 -23.236 0.000 0.000 0.000 0.000 [ MATL 59 ] 273 - u - = - ML 177 176 3 179 3 1 16 298 663 -4.379 -0.117 -5.068 -1.940 0.093 0.235 0.581 D 178 176 3 179 3 0 12 294 658 -29.792 -3.741 -0.112 IL 179 179 3 179 3 4 17 299 664 -0.725 -1.340 -24.239 0.000 0.000 0.000 0.000 [ MATL 60 ] 277 - G - = - ML 180 179 3 182 3 2 15 297 662 -4.738 -0.055 -12.361 -1.954 0.315 1.148 -1.826 D 181 179 3 182 3 0 12 293 658 -29.688 -4.240 -0.078 IL 182 182 3 182 3 3 16 297 662 -2.024 -0.407 -23.429 0.000 0.000 0.000 0.000 [ MATL 61 ] 280 - g - = - ML 183 182 3 185 3 2 14 296 661 -18.059 -0.001 -10.185 -1.750 0.217 0.710 -0.145 D 184 182 3 185 3 0 12 293 658 -29.610 -8.147 -0.005 IL 185 185 3 185 3 2 15 299 664 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 281 - a - = - ML 186 185 3 188 3 2 13 295 660 -18.073 -0.007 -7.680 0.396 0.381 -0.258 -0.875 D 187 185 3 188 3 0 12 293 658 -29.605 -11.124 -0.001 IL 188 188 3 188 3 2 14 298 663 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 282 - C - = - ML 189 188 3 191 3 1 12 294 659 -18.068 -0.505 -1.760 -2.477 1.217 -0.588 -0.270 D 190 188 3 191 3 0 12 293 658 -29.607 -0.020 -6.182 IL 191 191 3 191 3 1 14 298 663 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 283 - G - + - ML 192 191 3 194 3 1 12 293 658 -0.461 -1.885 -8.654 -0.415 -4.639 1.533 -1.666 D 193 191 3 194 3 0 11 291 656 -26.461 -0.004 -8.419 IL 194 194 3 194 3 2 14 293 657 -5.063 -0.044 -29.481 0.000 0.000 0.000 0.000 [ MATL 65 ] 287 - C - + - ML 195 194 3 197 3 1 13 291 656 -20.056 -0.000 -14.045 -4.673 1.659 -2.186 -0.781 D 196 194 3 197 3 0 5 286 651 -21.392 -4.352 -0.072 IL 197 197 3 197 3 1 12 295 660 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 288 - G - = - ML 198 197 3 200 3 1 12 290 655 -8.458 -0.014 -7.269 -1.317 0.031 1.267 -2.553 D 199 197 3 200 3 0 5 286 651 -21.355 -9.881 -0.002 IL 200 200 3 200 3 1 12 291 655 -13.919 -0.000 -21.563 0.000 0.000 0.000 0.000 [ MATL 67 ] 290 - c - = - ML 201 200 3 203 3 1 11 290 654 -6.615 -0.016 -9.962 -1.030 0.866 -0.641 0.066 D 202 200 3 203 3 0 5 286 651 -23.216 -2.422 -0.298 IL 203 203 3 203 3 2 11 290 654 -15.753 -0.000 -23.397 0.000 0.000 0.000 0.000 [ MATL 68 ] 292 - G - = - ML 204 203 3 206 3 1 10 289 653 -5.929 -0.024 -13.195 -0.642 -1.610 1.433 -1.590 D 205 203 3 206 3 0 5 285 650 -23.103 -5.879 -0.025 IL 206 206 3 206 3 2 10 289 654 -1.426 -0.671 -24.755 0.000 0.000 0.000 0.000 [ MATL 69 ] 296 - G - = - ML 207 206 3 209 3 1 9 287 652 -8.361 -0.016 -6.951 -1.111 -3.346 1.759 -4.230 D 208 206 3 209 3 0 5 285 650 -23.097 -8.822 -0.003 IL 209 209 3 209 3 1 9 287 652 -14.008 -0.000 -21.652 0.000 0.000 0.000 0.000 [ MATL 70 ] 298 - G - = - ML 210 209 3 212 3 1 8 286 651 -6.428 -0.017 -11.749 -6.752 -7.951 1.992 -6.936 D 211 209 3 212 3 0 5 285 650 -24.078 -0.863 -1.151 IL 212 212 3 212 3 2 8 291 656 -0.322 -2.322 -25.895 0.000 0.000 0.000 0.000 [ MATL 71 ] 304 - U - + - ML 213 212 3 215 3 1 7 285 650 -6.112 -0.021 -20.048 -4.260 -7.040 -7.419 1.976 D 214 212 3 215 3 0 5 284 649 -22.982 -0.009 -7.322 IL 215 215 3 215 3 1 7 287 652 -0.665 -1.437 -25.338 0.000 0.000 0.000 0.000 [ MATL 72 ] 309 - U - + - ML 216 215 3 218 3 1 6 284 649 -20.059 -0.000 -18.057 -6.775 -4.680 -5.858 1.976 D 217 215 3 218 3 0 0 276 641 -15.688 -0.658 -1.449 IL 218 218 3 218 3 1 4 288 653 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 310 - C - + - ML 219 218 3 221 3 1 5 283 648 -4.838 -0.051 -20.059 -4.925 1.967 -6.053 -4.557 D 220 218 3 221 3 0 0 251 616 -14.510 -2.895 -0.208 IL 221 221 3 221 3 1 7 312 675 -0.093 -4.000 -29.187 0.000 0.000 0.000 0.000 [ MATL 74 ] 327 - G - + - ML 222 221 3 224 3 1 4 280 645 -8.052 -0.006 -10.719 0.528 -5.441 1.332 -5.828 D 223 221 3 224 3 0 0 237 602 -14.372 -3.006 -0.192 IL 224 224 3 224 3 1 4 280 645 -14.329 -0.000 -21.973 0.000 0.000 0.000 0.000 [ MATL 75 ] 329 - A - + - ML 225 224 3 227 3 1 3 279 644 -4.367 -0.072 -11.949 1.967 -6.060 -4.369 -5.199 D 226 224 3 227 3 0 0 97 437 -19.347 -9.381 -0.002 IL 227 227 3 227 3 1 5 338 703 -0.073 -4.345 -30.002 0.000 0.000 0.000 0.000 [ MATL 76 ] 354 - a - + - ML 228 227 3 230 3 1 2 161 368 -5.721 -0.030 -9.352 0.955 -2.013 -0.046 -0.244 D 229 227 3 230 3 0 0 83 290 -19.845 -9.880 -0.002 IL 230 230 3 230 3 1 2 165 372 -0.333 -2.278 -26.581 0.000 0.000 0.000 0.000 [ MATL 77 ] 362 - U - + - ML 231 230 3 233 3 1 1 159 366 -4.916 -0.063 -6.653 -4.370 -0.561 -4.581 1.693 D 232 230 3 233 3 0 0 61 238 -21.316 -0.135 -3.489 IL 233 233 3 233 3 1 5 197 404 -0.128 -3.555 -28.660 0.000 0.000 0.000 0.000 [ MATL 78 ] 377 - C - = - ML 234 233 3 236 3 1 2 61 121 -20.044 -0.000 -15.251 -6.654 1.941 -3.031 -5.169 D 235 233 3 236 3 0 0 59 119 -23.400 -1.589 -0.583 IL 236 236 3 236 3 1 1 77 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 378 - C - = - ML 237 236 3 239 3 1 1 60 120 -6.749 -0.014 -13.704 -4.214 1.758 -3.319 -1.111 D 238 236 3 239 3 0 0 59 119 -22.822 -0.068 -4.443 IL 239 239 3 239 3 1 2 62 121 -0.939 -1.064 -24.330 0.000 0.000 0.000 0.000 [ MATL 80 ] 382 - C - = - ML 240 239 3 242 3 1 1 59 119 -6.670 -0.014 -13.339 -2.296 1.404 -1.066 -0.572 D 241 239 3 242 3 0 0 56 116 -18.688 -2.391 -0.305 IL 242 242 3 242 3 1 3 61 121 -0.731 -1.331 -24.686 0.000 0.000 0.000 0.000 [ MATL 81 ] 386 - g - = - ML 243 242 3 245 3 1 2 58 118 -6.109 -0.021 -20.059 -0.109 -0.888 0.933 -0.681 D 244 242 3 245 3 0 0 56 116 -18.771 -3.250 -0.160 IL 245 245 3 245 3 1 2 59 118 -1.386 -0.696 -24.611 0.000 0.000 0.000 0.000 [ MATL 82 ] 390 - c - = - ML 246 245 3 248 3 1 1 57 117 -4.971 -0.050 -8.728 -2.687 0.756 0.137 0.079 D 247 245 3 248 3 0 0 56 115 -18.614 -0.048 -4.933 IL 248 248 3 248 3 1 2 57 117 -1.662 -0.548 -25.601 0.000 0.000 0.000 0.000 [ MATL 83 ] 394 - C - = - ML 249 248 3 251 3 1 1 56 115 -5.946 -0.024 -11.791 -1.164 1.197 -2.376 0.095 D 250 248 3 251 3 0 0 52 112 -21.304 -1.187 -0.835 IL 251 251 3 251 3 1 2 59 119 -0.656 -1.452 -25.528 0.000 0.000 0.000 0.000 [ MATL 84 ] 399 - g - = - ML 252 251 3 254 3 1 1 55 114 -5.499 -0.032 -12.590 -0.899 0.252 0.522 -0.257 D 253 251 3 254 3 0 0 46 103 -20.747 -5.030 -0.045 IL 254 254 3 254 3 1 2 64 125 -0.439 -1.929 -26.452 0.000 0.000 0.000 0.000 [ MATL 85 ] 406 - g - = - ML 255 254 3 257 3 1 1 51 108 -5.949 -0.024 -12.343 -1.547 0.294 0.669 -0.247 D 256 254 3 257 3 0 0 45 102 -20.844 -2.957 -0.199 IL 257 257 3 257 3 1 2 55 112 -0.618 -1.521 -25.594 0.000 0.000 0.000 0.000 [ MATL 86 ] 411 - c - = - ML 258 257 3 260 3 1 1 50 107 -6.009 -0.023 -13.320 -1.576 0.837 0.506 -1.126 D 259 257 3 260 3 0 0 43 100 -20.819 -4.003 -0.093 IL 260 260 3 260 3 1 2 56 113 -0.525 -1.713 -25.727 0.000 0.000 0.000 0.000 [ MATL 87 ] 417 - g - = - ML 261 260 3 263 3 1 1 49 105 -5.186 -0.046 -8.067 -0.847 0.361 0.463 -0.356 D 262 260 3 263 3 0 0 42 98 -20.812 -2.769 -0.229 IL 263 263 3 263 3 1 2 52 109 -0.610 -1.537 -26.374 0.000 0.000 0.000 0.000 [ MATL 88 ] 422 - C - = - ML 264 263 3 266 3 1 1 47 104 -4.130 -0.085 -15.603 -1.783 1.049 0.547 -2.478 D 265 263 3 266 3 0 0 38 82 -22.427 -0.394 -2.066 IL 266 266 3 266 3 1 2 55 112 -0.467 -1.853 -27.741 0.000 0.000 0.000 0.000 [ MATL 89 ] 428 - C - = - ML 267 266 3 269 3 1 1 39 83 -1.533 -0.673 -5.213 -2.416 1.780 -2.046 -2.864 D 268 266 3 269 3 0 0 6 50 -20.384 -4.639 -0.059 IL 269 269 3 269 3 1 2 40 84 -0.603 -1.550 -30.040 0.000 0.000 0.000 0.000 [ MATL 90 ] 432 - A - + - ML 270 269 3 272 2 1 1 1 1 * 0.000 1.654 -3.110 -0.852 -2.452 D 271 269 3 272 2 0 0 0 0 * 0.000 IL 272 272 3 272 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 91 ] - - - - - - E 273 272 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME all-042516 LENG 90 MAXL 663 ALPH RNA RF yes MM no CONS yes CS yes MAP no DATE Tue Apr 26 01:34:00 2016 COM [1] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/all-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/all-042516.sto COM [2] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/all-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/all-042516.sto NSEQ 109245 EFFN 109245.000000 STATS LOCAL MSV -8.5560 0.71765 STATS LOCAL VITERBI -9.7073 0.71765 STATS LOCAL FORWARD -3.1221 0.71765 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59557 1.30617 1.15402 1.55597 1.38629 1.38629 1.38629 1.38629 0.03216 15.15858 3.45298 0.39730 1.11515 0.00000 * 1 3.81309 2.79373 0.14950 2.88976 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01089 5.50005 4.99874 0.00005 9.98101 2.42299 0.09283 2 3.73465 0.93527 0.66727 2.65170 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01517 5.25174 4.62321 0.44465 1.02456 1.92250 0.15811 3 1.72323 1.07945 1.03922 2.05575 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00932 5.18319 5.60951 0.58125 0.81916 2.18753 0.11900 4 2.40888 1.10066 0.80542 2.03612 - g = - : 1.38629 1.38629 1.38629 1.38629 0.02512 3.92827 5.27205 0.76031 0.63021 1.69714 0.20237 5 1.71653 1.00507 1.07661 2.17555 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01068 13.86669 4.54479 1.46634 0.26236 1.12611 0.39199 6 1.82447 1.16968 1.07264 1.68133 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01776 4.04909 8.68445 0.35378 1.21076 1.68485 0.20515 7 1.35906 3.05440 0.52743 2.24594 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01997 4.13480 5.58086 1.47978 0.25837 0.35624 1.20500 8 3.26493 4.50550 4.14471 0.06731 - U + - : 1.38629 1.38629 1.38629 1.38629 0.02432 3.78076 6.70646 0.61776 0.77468 0.04364 3.15360 9 0.58458 3.42239 0.97107 3.46261 - A + - : 1.38629 1.38629 1.38629 1.38629 0.04357 3.55033 4.27474 0.07850 2.58363 0.26918 1.44394 10 3.75073 2.82246 0.11563 3.64081 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01361 5.17640 4.84512 0.45256 1.01059 4.04615 0.01764 11 3.67991 0.34461 3.10914 1.50672 - C = - : 1.38629 1.38629 1.38629 1.38629 0.02273 3.92373 5.91369 0.24627 1.52195 2.40100 0.09500 12 2.90289 1.44817 1.60928 0.67314 - U = - : 1.38629 1.38629 1.38629 1.38629 0.00382 5.86833 6.92556 0.00007 9.62209 1.29481 0.32014 13 2.74612 0.73903 1.61177 1.35204 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01634 4.31441 5.86652 1.60944 0.22314 0.33846 1.24782 14 0.09441 4.14746 4.11893 2.84697 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00351 13.89618 5.65297 1.46634 0.26236 2.52340 0.08358 15 1.69729 3.15496 0.27862 4.05377 - G + - : 1.38629 1.38629 1.38629 1.38629 0.01835 5.73576 4.20282 0.00006 9.76676 5.70528 0.00333 16 2.52608 0.98416 3.43657 0.66534 - U + - : 1.38629 1.38629 1.38629 1.38629 0.53906 13.87827 0.87539 1.46634 0.26236 10.22947 0.00004 17 3.45074 0.84257 4.30986 0.64581 - U + - : 1.38629 1.38629 1.38629 1.38629 0.56959 0.91188 3.42733 0.07882 2.57972 0.03032 3.51119 18 4.47776 5.93057 0.02816 4.28655 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00129 13.87210 6.65272 1.46634 0.26236 1.99237 0.14661 19 4.33563 4.35470 0.04357 4.09248 - G + - : 1.38629 1.38629 1.38629 1.38629 0.01140 13.87522 4.47969 1.46634 0.26236 2.25971 0.11024 20 2.02426 2.02357 3.26750 0.36007 - U + - : 1.38629 1.38629 1.38629 1.38629 0.97030 0.47662 8.80007 1.07555 0.41720 0.02479 3.70965 21 0.18913 3.60550 2.26834 3.17817 - A + - : 1.38629 1.38629 1.38629 1.38629 0.02595 4.51537 4.22124 1.17298 0.37026 0.34551 1.23052 22 1.20664 3.89310 0.58961 2.07248 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00474 5.79314 6.38612 0.00006 9.70494 2.29734 0.10594 23 0.69725 1.60322 1.38854 2.96895 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00783 4.92096 7.59599 0.00003 10.57710 1.46089 0.26400 24 1.60599 3.10193 0.32510 3.44533 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00704 5.86850 5.47576 0.00007 9.63246 2.26767 0.10932 25 3.72830 0.28490 2.81243 1.80900 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01747 4.17570 6.23892 1.94591 0.15415 0.00381 5.57085 26 1.05699 3.00094 0.62786 2.67327 - G + - : 1.38629 1.38629 1.38629 1.38629 0.01886 4.00374 7.73284 0.49348 0.94289 0.24131 1.53989 27 2.60192 0.71545 1.64412 1.41176 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01598 4.31665 5.98828 1.02692 0.44333 4.18522 0.01534 28 2.41733 0.79526 1.73233 1.26406 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00439 5.80118 6.59971 0.00006 9.70862 2.14052 0.12510 29 1.69884 1.65492 0.78053 1.78478 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00877 5.73912 5.19954 0.00006 9.76973 1.79211 0.18225 30 4.76540 1.77954 0.24177 3.28276 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00720 5.22587 6.32100 0.45887 0.99966 0.75932 0.63108 31 1.02718 1.05124 1.57788 2.45257 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00837 4.83745 7.80754 1.30617 0.31588 0.57989 0.82089 32 3.81213 0.31770 6.02348 1.39573 - C + - : 1.38629 1.38629 1.38629 1.38629 0.01028 4.59376 9.08252 0.70375 0.68266 1.40485 0.28157 33 4.90280 3.72204 5.01577 0.03899 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00016 13.90133 8.76121 1.46634 0.26236 0.95319 0.48696 34 1.46823 1.32977 1.34758 1.40542 - c * - : 1.38629 1.38629 1.38629 1.38629 0.00056 13.90219 7.49306 1.46634 0.26236 0.97651 0.47260 35 1.44486 1.29159 1.42427 1.39149 - c * - : 1.38629 1.38629 1.38629 1.38629 0.00001 13.90230 11.50865 1.46634 0.26236 1.91025 0.16022 36 1.32783 1.44149 1.35829 1.42182 - a * - : 1.38629 1.38629 1.38629 1.38629 0.00000 13.90253 12.72843 1.46634 0.26236 0.22730 1.59298 37 0.33860 5.22944 1.28423 5.29566 - A + - : 1.38629 1.38629 1.38629 1.38629 0.18363 1.78625 8.68180 3.71384 0.02469 3.83137 0.02192 38 0.26525 2.31176 3.79210 2.19505 - A + - : 1.38629 1.38629 1.38629 1.38629 0.01728 5.43833 4.35948 0.00004 10.07444 0.96365 0.48045 39 2.56745 1.65928 1.00681 1.00073 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00308 5.87533 8.23263 0.00007 9.62467 2.46054 0.08926 40 5.68126 0.28549 1.64160 2.97054 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01012 4.64187 7.76255 0.84995 0.55763 3.48496 0.03113 41 1.87990 0.79480 1.57497 1.66754 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00328 5.84922 7.83222 0.00006 9.65160 3.26222 0.03906 42 1.36301 1.87277 0.75858 2.10305 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00659 5.05109 8.67998 0.33781 1.24943 1.43389 0.27231 43 1.55060 2.54109 0.65386 1.66567 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00005 13.89447 10.01240 1.46634 0.26236 1.40669 0.28097 44 0.81634 2.30623 1.79259 1.23172 - a + - : 1.38629 1.38629 1.38629 1.38629 0.16899 13.89676 1.86124 1.46634 0.26236 6.37605 0.00170 45 2.54780 2.71003 0.24701 2.60267 - G + - : 1.38629 1.38629 1.38629 1.38629 2.24699 3.98514 0.13274 0.40779 1.09398 0.12068 2.17436 46 1.73235 2.15210 0.45274 2.64493 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00113 12.50717 6.79067 1.46634 0.26236 4.91305 0.00738 47 2.31101 1.65679 1.10272 0.97254 - u = - : 1.38629 1.38629 1.38629 1.38629 0.01264 12.52819 4.37747 1.46634 0.26236 11.96224 0.00001 48 1.58519 0.96618 1.19270 2.19682 - c = - : 1.38629 1.38629 1.38629 1.38629 0.23150 3.01321 1.84819 0.24921 1.51148 11.64334 0.00001 49 3.78480 0.65544 1.02851 2.29725 - C = - : 1.38629 1.38629 1.38629 1.38629 0.35509 12.34419 1.20769 1.46634 0.26236 9.01325 0.00012 50 2.58821 1.34807 0.60331 2.13616 - G = - : 1.38629 1.38629 1.38629 1.38629 0.27809 3.26037 1.58768 0.58734 0.81149 8.39548 0.00023 51 2.44656 0.97358 1.13638 1.53851 - c = - : 1.38629 1.38629 1.38629 1.38629 0.61074 2.61458 0.95750 0.42239 1.06560 10.43583 0.00003 52 3.06078 0.51283 1.64647 1.82251 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.27884 11.27884 1.46634 0.26236 1.73912 0.19319 53 2.41328 1.93473 0.79144 1.16211 - g + - : 1.38629 1.38629 1.38629 1.38629 0.00118 12.45741 6.74235 1.46634 0.26236 6.42956 0.00161 54 1.17392 1.22066 2.53439 1.15043 - u + - : 1.38629 1.38629 1.38629 1.38629 0.00327 12.46146 5.72433 1.46634 0.26236 7.23317 0.00072 55 0.51238 2.19609 2.60392 1.53381 - A + - : 1.38629 1.38629 1.38629 1.38629 0.49428 1.59010 1.68154 1.43332 0.27249 7.17956 0.00076 56 0.54540 2.05043 1.66458 2.27851 - A + - : 1.38629 1.38629 1.38629 1.38629 1.90007 1.31087 0.54325 0.07559 2.61993 5.53379 0.00396 57 1.88800 1.47704 0.59962 2.64096 - G = - : 1.38629 1.38629 1.38629 1.38629 0.07129 11.42683 2.67660 1.46634 0.26236 3.03741 0.04915 58 1.78346 1.69621 0.62625 2.17177 - G = - : 1.38629 1.38629 1.38629 1.38629 0.07895 2.60317 6.28063 0.00002 10.80754 3.47827 0.03135 59 2.73127 1.32172 1.22365 0.98341 - u = - : 1.38629 1.38629 1.38629 1.38629 0.08106 3.03560 3.51281 0.92898 0.50246 2.59341 0.07771 60 2.74089 1.16807 0.59060 2.65174 - G = - : 1.38629 1.38629 1.38629 1.38629 0.03838 3.28434 8.56798 0.28210 1.40324 2.93913 0.05436 61 2.59939 1.23555 0.89429 1.48675 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00086 12.51782 7.05999 1.46634 0.26236 5.64727 0.00353 62 1.11154 1.12205 1.56530 1.99281 - a = - : 1.38629 1.38629 1.38629 1.38629 0.00489 12.52749 5.32352 1.46634 0.26236 7.71076 0.00045 63 3.10313 0.54239 1.79377 1.57310 - C = - : 1.38629 1.38629 1.38629 1.38629 0.34986 12.52394 1.22007 1.46634 0.26236 0.01387 4.28470 64 1.67372 4.60185 0.32349 2.54086 - G + - : 1.38629 1.38629 1.38629 1.38629 1.30635 0.31923 5.99883 0.03038 3.50911 0.00293 5.83574 65 4.62567 0.23605 2.90169 1.92737 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00006 13.90143 9.73491 1.46634 0.26236 3.01687 0.05019 66 2.29903 1.36472 0.50816 3.15620 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00937 5.86284 5.03858 0.00006 9.64786 6.84884 0.00106 67 2.10025 0.78628 1.83090 1.34029 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01127 4.58534 6.90530 0.00002 10.91902 1.67854 0.20659 68 1.83151 2.50226 0.39317 2.48874 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01666 4.10954 9.14630 0.46532 0.98868 4.07501 0.01714 69 2.15639 3.70575 0.16681 4.31860 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01119 5.79514 4.81826 0.00006 9.70978 6.11488 0.00221 70 6.06629 6.89745 0.00539 6.19402 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01197 4.45574 8.14377 1.60944 0.22314 0.59831 0.79793 71 4.33890 6.26639 6.52885 0.01655 - U + - : 1.38629 1.38629 1.38629 1.38629 0.01456 4.23683 13.89634 0.99601 0.46101 0.00627 5.07528 72 6.08206 4.63040 5.44641 0.01648 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00000 13.90390 12.51600 1.46634 0.26236 0.45611 1.00442 73 4.79989 0.02288 5.58170 4.54466 - C + - : 1.38629 1.38629 1.38629 1.38629 0.03560 3.35327 13.90393 2.77259 0.06454 2.00636 0.14442 74 1.02046 5.15752 0.46296 5.42629 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00437 5.58088 7.42978 0.00005 9.93231 2.08371 0.13292 75 0.02291 5.58706 4.41473 4.99011 - A + - : 1.38629 1.38629 1.38629 1.38629 0.04993 3.02723 8.28212 3.01173 0.05046 6.50238 0.00150 76 0.72405 2.78126 1.41819 1.55543 - a + - : 1.38629 1.38629 1.38629 1.38629 0.02071 3.96524 6.48256 1.57902 0.23089 6.84796 0.00106 77 4.41519 1.77547 4.56153 0.21312 - U + - : 1.38629 1.38629 1.38629 1.38629 0.04401 3.40775 4.61117 2.46381 0.08895 0.09330 2.41825 78 5.99837 0.04084 3.48715 4.96942 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00003 13.89377 10.57148 1.46634 0.26236 1.10170 0.40392 79 4.30721 0.16758 3.68663 2.15621 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00942 4.67779 9.49900 0.73744 0.65074 0.04707 3.07948 80 2.97809 0.41326 2.12516 1.78258 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00997 4.62297 9.24613 0.92267 0.50659 1.65748 0.21148 81 1.46203 2.00196 0.73986 1.85800 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01460 4.23434 13.90354 0.48222 0.96079 2.25272 0.11106 82 3.24865 0.86233 1.29100 1.33180 - c = - : 1.38629 1.38629 1.38629 1.38629 0.03484 3.44566 6.04969 0.37979 1.15203 0.03329 3.41900 83 2.19288 0.55651 3.03321 1.32035 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01664 4.12157 8.17324 1.00668 0.45481 0.82274 0.57844 84 2.00943 1.21134 1.02448 1.56467 - g = - : 1.38629 1.38629 1.38629 1.38629 0.02252 3.81181 8.72638 1.33714 0.30462 3.48633 0.03109 85 2.45862 1.18282 0.92276 1.55774 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01652 4.12337 8.55575 1.05411 0.42848 2.04994 0.13782 86 2.47886 0.80584 1.03590 2.16681 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01575 4.16499 9.23257 1.18769 0.36373 2.77451 0.06441 87 1.97370 1.13590 1.06532 1.63317 - g = - : 1.38629 1.38629 1.38629 1.38629 0.03170 3.59456 5.59179 1.06533 0.42253 1.91913 0.15868 88 2.62206 0.65936 1.00704 3.10413 - C = - : 1.38629 1.38629 1.38629 1.38629 0.05883 2.86278 10.81548 1.28465 0.32400 0.27299 1.43171 89 3.06121 0.15281 2.80457 3.37145 - C = - : 1.38629 1.38629 1.38629 1.38629 0.46616 1.06236 3.61368 1.07429 0.41785 3.21525 0.04097 90 0.23976 3.54215 1.97657 3.08584 - A + - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 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V5>m>e>R>᱋ Zqݵ$r7?ZTrp$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       W[r7?7r7?mlr7?> KxSG>3 m>uQf>Vt>᱈V Zd47?ZTyr$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     7??7?Cb7? T?B}>U>a>>ᱝZl747?ZVal$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            KY 47?47?Ju47?'$c>ty>uP>/u>tRNAscan-SE-2.0/lib/models/TRNAinf-bact.cm0000644000543100007160000017615512706352166017403 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME bact-030216 STATES 298 NODES 79 CLEN 93 W 376 ALPH RNA RF yes CONS yes MAP yes DATE Wed Mar 2 10:20:46 2016 COM [1] cmbuild -F --enone --hand bact-030216.cm bact-030216.sto COM [2] cmcalibrate --hfile bact.hfile --sfile bact.sfile --qqfile bact.qqfile --ffile bact.ffile --seed 208 bact-030216.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 73969 EFFN 73969.000000 CKSUM 3791442110 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.6486 0.71867 ECMLC 0.61127 -8.30777 1.69299 1600000 542112 0.002214 ECMGC 0.38510 -21.01750 -10.53812 1600000 22632 0.017674 ECMLI 0.51408 -9.54457 2.16989 1600000 494971 0.002424 ECMGI 0.40566 -15.87713 -6.09736 1600000 21136 0.018925 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 376 774 -21.100 -22.346 -0.706 -1.370 IL 1 1 2 1 4 22 47 377 775 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 23 49 378 776 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 450 - A - * MR 3 2 3 5 3 26 51 377 775 -21.803 -0.000 -20.121 2.000 -17.426 -16.733 -16.754 D 4 2 3 5 3 18 44 373 772 -22.233 -17.411 -0.000 IR 5 5 3 5 3 23 49 377 775 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 449 - C - * MR 6 5 3 8 3 25 50 376 774 -21.803 -0.000 -20.121 -18.741 2.000 -20.215 -16.673 D 7 5 3 8 3 18 44 373 772 -22.233 -17.411 -0.000 IR 8 8 3 8 3 23 49 376 774 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 448 - C - * MR 9 8 3 11 3 24 49 375 773 -21.803 -0.000 -15.195 -18.741 2.000 -20.215 -16.673 D 10 8 3 11 3 18 44 373 772 -22.233 -0.210 -2.884 IR 11 11 3 11 3 20 46 375 773 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 447 - a - + MR 12 11 3 14 5 23 48 374 772 -4.640 -0.106 -18.603 -5.017 -15.218 0.983 -2.279 0.273 -0.717 D 13 11 3 14 5 16 41 372 770 -17.476 -0.116 -4.105 -16.533 -5.711 IR 14 14 3 14 5 20 46 374 772 -3.886 -0.110 -8.185 -10.735 -9.392 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 444 G C = = MP 15 14 3 19 6 24 48 373 771 -8.712 -8.488 -0.009 -11.872 -10.633 -15.576 -7.077 -11.269 -7.533 0.023 -1.613 -13.686 -0.245 -2.935 -11.514 3.634 -4.160 -0.674 -1.016 -13.806 -3.703 -14.774 ML 16 14 3 19 6 22 46 371 769 -14.663 -15.009 -7.294 -0.010 -14.859 -12.388 1.968 -6.900 -5.028 -4.331 MR 17 14 3 19 6 18 43 369 767 -18.393 -17.122 -1.290 -17.100 -0.764 -8.727 -3.338 1.726 -2.073 -1.494 D 18 14 3 19 6 11 35 360 758 -16.259 -14.958 -10.755 -11.437 -11.454 -0.002 IL 19 19 5 19 6 22 47 372 770 -10.089 -10.352 -0.003 -12.007 -12.783 -12.444 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 22 47 372 770 -9.425 -0.003 -12.937 -11.104 -12.210 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 442 g c = = MP 21 20 6 25 6 23 46 371 769 -7.226 -8.584 -0.017 -9.801 -9.925 -14.275 -9.195 -3.044 -11.447 0.172 -7.925 -10.819 2.473 -10.118 -9.036 2.945 -3.471 -0.157 -1.912 -2.687 -3.654 -9.899 ML 22 20 6 25 6 21 45 370 768 -14.767 -15.113 -0.070 -4.413 -14.963 -12.493 1.820 -3.113 -2.595 -2.404 MR 23 20 6 25 6 17 41 366 764 -17.679 -16.408 -3.273 -16.387 -0.159 -10.383 -2.676 1.010 0.716 -2.425 D 24 20 6 25 6 11 35 360 758 -16.371 -15.069 -4.664 -11.548 -11.566 -0.059 IL 25 25 5 25 6 22 45 370 768 -11.587 -11.850 -0.001 -13.505 -14.281 -13.941 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 21 45 370 768 -9.347 -0.003 -12.858 -11.026 -12.132 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 440 g c = = MP 27 26 6 31 6 21 45 369 767 -6.803 -18.792 -0.023 -11.689 -7.317 -11.218 -11.600 -8.158 -3.915 2.252 -9.126 -11.334 1.879 -8.615 -11.372 2.536 -4.952 -0.180 -0.569 -5.952 -3.759 -9.491 ML 28 26 6 31 6 18 43 367 765 -13.321 -13.667 -0.237 -2.727 -13.517 -11.046 0.603 -3.519 1.198 -3.327 MR 29 26 6 31 6 16 40 365 763 -17.609 -16.338 -3.585 -16.316 -0.128 -9.205 -0.334 -0.597 0.189 0.491 D 30 26 6 31 6 11 35 360 758 -16.390 -15.088 -4.261 -11.568 -6.458 -0.095 IL 31 31 5 31 6 18 42 368 766 -1.732 -2.050 -1.683 -14.449 -2.777 -14.885 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 20 44 368 766 -9.599 -0.003 -13.110 -11.278 -12.384 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 438 g c = = MP 33 32 6 37 6 19 43 367 765 -7.508 -8.462 -0.014 -9.987 -11.429 -12.778 -12.598 -4.166 -9.634 1.093 -11.053 -10.595 1.938 -11.644 -10.905 2.960 -9.222 -2.084 0.741 -3.992 -2.201 -7.941 ML 34 32 6 37 6 15 40 365 763 -11.961 -12.307 -0.444 -2.175 -12.157 -4.540 -0.719 -1.354 0.675 0.490 MR 35 32 6 37 6 15 39 364 762 -18.079 -16.808 -3.493 -16.786 -0.140 -8.174 -0.855 0.324 1.029 -2.689 D 36 32 6 37 6 11 35 359 757 -16.774 -15.473 -5.152 -11.952 -5.623 -0.072 IL 37 37 5 37 6 19 43 367 765 -1.445 -1.445 -1.915 -13.879 -14.656 -14.316 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 18 42 366 764 -10.546 -0.001 -14.057 -12.225 -13.331 0.000 0.000 0.000 0.000 [ MATP 9 ] 12 436 c g = = MP 39 38 6 43 6 17 41 365 763 -8.665 -8.837 -0.012 -12.170 -10.015 -8.494 -5.385 -3.727 -7.119 1.659 -7.905 -8.751 2.579 -5.120 -11.945 2.235 -7.581 -1.754 0.457 -10.010 -1.695 -4.954 ML 40 38 6 43 6 15 38 362 760 -13.087 -13.434 -3.730 -0.114 -13.283 -10.813 1.715 -2.605 -2.935 -1.247 MR 41 38 6 43 6 14 38 362 760 -17.966 -2.814 -4.448 -16.673 -0.301 -14.886 -2.984 -1.601 0.838 0.813 D 42 38 6 43 6 11 35 359 757 -16.920 -15.618 -4.078 -12.097 -8.554 -0.093 IL 43 43 5 43 6 17 40 364 762 -10.150 -1.024 -0.981 -12.068 -12.844 -12.505 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 16 40 364 762 -1.795 -0.607 -14.672 -4.180 -13.946 0.000 0.000 0.000 0.000 [ MATP 10 ] 14 433 g c = = MP 45 44 6 49 6 15 39 363 761 -4.838 -9.215 -0.057 -11.667 -8.983 -13.146 -8.625 -6.041 -4.877 1.945 -4.267 -6.356 1.797 -6.755 -8.861 2.178 -5.216 -2.765 1.395 -5.082 0.194 -4.508 ML 46 44 6 49 6 14 37 361 759 -13.257 -13.603 -2.078 -0.400 -13.453 -7.568 -3.019 -4.712 1.812 -1.611 MR 47 44 6 49 6 13 37 361 759 -17.779 -16.508 -0.899 -16.486 -1.109 -12.041 -0.937 0.816 0.665 -2.936 D 48 44 6 49 6 11 35 359 757 -18.246 -16.944 -6.209 -13.423 -0.679 -1.466 IL 49 49 5 49 6 14 38 362 760 -1.346 -2.870 -1.172 -16.609 -9.564 -5.335 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 13 37 361 759 -11.211 -0.366 -14.722 -3.272 -3.055 0.000 0.000 0.000 0.000 [ MATP 11 ] 19 431 G C = = MP 51 50 6 55 4 13 37 361 759 -4.868 -7.445 -0.084 -5.908 -8.639 -2.983 -12.145 1.336 -10.112 -10.700 -1.436 -5.857 -6.230 3.040 -5.715 0.837 1.515 -8.242 -4.414 -7.309 ML 52 50 6 55 4 13 36 360 758 -10.358 -0.557 -1.654 -9.270 1.730 -1.861 -2.549 -2.075 MR 53 50 6 55 4 11 35 359 757 -5.313 -14.438 -3.476 -0.176 0.662 1.052 -2.158 -3.067 D 54 50 6 55 4 11 34 358 756 -13.626 -1.901 -3.230 -0.677 IL 55 55 5 55 4 13 37 361 759 -1.001 -1.163 -4.219 -17.460 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 12 36 359 758 -2.557 -0.752 -2.083 0.000 0.000 0.000 0.000 [ MATL 12 ] 24 - U - + - ML 57 56 6 59 3 11 35 358 757 -6.302 -0.027 -7.486 -3.468 -5.953 -3.032 1.915 D 58 56 6 59 3 10 34 358 756 -4.318 -0.091 -6.505 IL 59 59 3 59 3 12 36 361 759 -0.487 -1.803 -15.282 0.000 0.000 0.000 0.000 [ MATL 13 ] 30 - A - + - ML 60 59 3 62 2 10 34 357 756 -7.667 -0.007 1.237 -2.509 0.215 -1.703 D 61 59 3 62 2 9 33 356 755 -14.448 -0.000 IL 62 62 3 62 2 11 34 358 756 -1.645 -0.556 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 64 173 9 33 356 755 [ BEGL 15 ] - - - - - - S 64 63 1 65 1 0 11 264 572 0.000 [ BIF 16 ] - - - - - - B 65 64 1 66 116 0 11 264 572 [ BEGL 17 ] - - - - - - S 66 65 1 67 4 0 0 213 478 -0.042 -6.727 -5.935 -8.398 [ MATP 18 ] 33 141 G C = = MP 67 66 1 71 6 2 3 213 478 -6.069 -9.501 -0.032 -8.232 -8.911 -11.807 -7.017 -5.357 -7.901 0.148 -9.918 -6.975 0.471 -7.733 -5.454 3.572 -9.995 0.242 -1.915 -4.587 -5.094 -5.730 ML 68 66 1 71 6 1 1 225 489 -16.225 -16.572 -4.448 -0.199 -7.487 -3.690 -1.360 -1.990 1.432 -0.600 MR 69 66 1 71 6 1 1 224 488 -17.553 -16.282 -1.622 -8.263 -0.596 -6.628 0.803 -0.108 -1.644 0.011 D 70 66 1 71 6 0 0 223 486 -17.705 -16.403 -7.286 -3.626 -12.900 -0.132 IL 71 71 5 71 6 1 3 213 478 -1.412 -1.141 -2.588 -7.814 -16.108 -15.768 0.000 0.000 0.000 0.000 IR 72 72 6 72 5 1 3 212 477 -2.041 -0.402 -15.468 -13.636 -14.742 0.000 0.000 0.000 0.000 [ MATP 19 ] 37 138 C G = = MP 73 72 6 77 6 2 3 210 475 -7.438 -7.673 -0.034 -7.889 -6.909 -12.900 -7.897 -6.420 -9.029 0.068 -9.565 -10.482 3.233 -6.763 -5.424 0.539 -4.718 -4.432 1.862 -4.029 -2.571 -3.350 ML 74 72 6 77 6 1 1 224 488 -5.455 -16.900 -5.788 -0.067 -16.750 -7.915 0.105 -4.322 -1.599 1.347 MR 75 72 6 77 6 1 1 227 491 -17.210 -15.939 -7.095 -11.706 -0.116 -3.845 0.385 -2.570 0.202 0.460 D 76 72 6 77 6 0 0 223 486 -18.090 -16.788 -9.584 -3.556 -8.082 -0.136 IL 77 77 5 77 6 1 2 211 476 -1.330 -1.234 -2.499 -14.083 -14.859 -14.520 0.000 0.000 0.000 0.000 IR 78 78 6 78 5 1 2 209 474 -2.076 -0.391 -15.046 -13.213 -14.319 0.000 0.000 0.000 0.000 [ MATP 20 ] 40 135 u a = = MP 79 78 6 83 6 2 3 208 473 -8.071 -7.723 -0.028 -7.739 -7.444 -16.695 -8.823 -7.256 -6.261 -0.757 -3.817 -3.166 1.891 -14.292 -3.590 1.567 -10.321 -4.015 2.789 -6.914 0.484 -3.874 ML 80 78 6 83 6 1 1 224 488 -5.181 -17.310 -2.831 -0.302 -17.160 -5.588 -1.469 -2.584 1.135 0.352 MR 81 78 6 83 6 1 1 226 490 -7.849 -3.047 -4.871 -11.965 -1.006 -1.547 1.439 -1.837 -0.716 -1.319 D 82 78 6 83 6 0 0 222 486 -18.337 -17.035 -10.844 -4.812 -7.617 -0.061 IL 83 83 5 83 6 1 2 208 473 -10.914 -1.096 -0.912 -12.832 -13.608 -13.269 0.000 0.000 0.000 0.000 IR 84 84 6 84 5 1 3 208 473 -0.807 -1.223 -15.873 -14.041 -15.147 0.000 0.000 0.000 0.000 [ MATP 21 ] 42 131 C G = = MP 85 84 6 89 4 2 2 205 470 -5.837 -4.996 -0.074 -10.000 0.711 -5.289 -7.218 -2.675 -0.650 -7.057 3.009 -2.866 1.392 -2.503 -3.617 -3.002 -0.067 -6.421 0.228 -2.320 ML 86 84 6 89 4 1 1 225 488 -0.628 -8.806 -1.800 -3.981 -1.022 0.535 0.329 -0.318 MR 87 84 6 89 4 1 1 230 493 -15.501 -0.833 -3.555 -1.500 -3.502 1.220 0.311 -1.547 D 88 84 6 89 4 0 0 222 486 -0.760 -14.773 -3.398 -1.669 IL 89 89 5 89 4 1 2 229 493 -0.349 -3.677 -2.874 -18.721 0.000 0.000 0.000 0.000 IR 90 90 6 90 3 1 1 237 500 -0.108 -3.824 -9.193 0.000 0.000 0.000 0.000 [ MATL 22 ] 50 - A - + - ML 91 90 6 93 3 1 1 196 462 -22.198 -0.011 -7.032 1.809 -2.216 -4.178 -2.155 D 92 90 6 93 3 0 0 187 453 -17.297 -1.388 -0.694 IL 93 93 3 93 3 1 1 196 462 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 51 - G - + - ML 94 93 3 96 3 1 1 195 461 -22.194 -0.021 -6.133 0.062 -1.643 1.346 -3.416 D 95 93 3 96 3 0 0 178 444 -17.594 -1.694 -0.534 IL 96 96 3 96 3 1 1 194 461 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 52 - U - + - ML 97 96 3 99 3 1 1 194 461 -4.958 -0.945 -1.157 -2.123 0.278 -2.321 1.238 D 98 96 3 99 3 0 0 152 366 -18.285 -10.256 -0.001 IL 99 99 3 99 3 1 2 242 509 -0.100 -3.906 -18.522 0.000 0.000 0.000 0.000 [ MATL 25 ] 68 - U - + - ML 100 99 3 102 3 1 1 153 367 -2.007 -0.416 -9.361 -2.320 -0.307 -4.790 1.563 D 101 99 3 102 3 0 0 152 366 -22.521 -0.050 -4.863 IL 102 102 3 102 3 1 1 154 368 -1.075 -0.956 -6.684 0.000 0.000 0.000 0.000 [ MATL 26 ] 76 - G - + - ML 103 102 3 105 3 1 1 152 366 -5.103 -0.043 -13.203 -4.242 -7.464 1.942 -3.346 D 104 102 3 105 3 0 0 48 262 -17.930 -3.099 -0.179 IL 105 105 3 105 3 1 1 192 406 -0.124 -3.600 -18.079 0.000 0.000 0.000 0.000 [ MATL 27 ] 90 - G - + - ML 106 105 3 108 3 1 1 27 54 -22.191 -0.001 -9.949 -5.967 -8.465 1.992 -8.497 D 107 105 3 108 3 0 0 24 51 -17.760 -1.530 -0.613 IL 108 108 3 108 3 1 1 28 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 91 - U - + - ML 109 108 3 111 3 1 1 26 53 -0.783 -1.255 -13.232 -1.864 -0.129 -1.153 1.240 D 110 108 3 111 3 0 0 21 49 -3.913 -0.176 -4.375 IL 111 111 3 111 3 1 1 25 53 -0.974 -1.047 -7.186 0.000 0.000 0.000 0.000 [ MATL 29 ] 109 - A - + - ML 112 111 3 114 2 1 1 1 1 * 0.000 1.661 -2.688 -0.838 -3.028 D 113 111 3 114 2 0 0 0 0 * 0.000 IL 114 114 3 114 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 115 114 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 116 65 1 117 3 0 0 237 547 -8.603 -0.025 -6.068 IL 117 117 2 117 3 1 2 238 548 -8.318 -0.005 -11.018 0.000 0.000 0.000 0.000 [ MATL 32 ] 143 - a - + - ML 118 117 2 120 5 1 1 237 547 -7.135 -0.013 -9.822 -13.214 -11.603 0.891 -1.562 0.767 -3.241 D 119 117 2 120 5 0 0 237 547 -1.474 -0.914 -9.725 -4.458 -3.991 IL 120 120 3 120 5 1 2 239 549 -0.735 -1.465 -4.758 -16.453 -15.727 0.000 0.000 0.000 0.000 [ MATP 33 ] 148 251 c g = = MP 121 120 3 125 6 2 2 236 546 -6.972 -7.187 -0.054 -6.111 -7.532 -8.798 -4.814 -5.183 -6.789 0.954 -1.167 -5.448 2.942 -3.739 -3.182 0.160 -4.124 0.492 1.323 -4.116 -1.717 -2.276 ML 122 120 3 125 6 1 1 234 544 -14.162 -14.508 -9.223 -0.070 -14.358 -4.461 1.021 0.559 -1.882 -2.142 MR 123 120 3 125 6 1 1 236 547 -13.182 -11.911 -1.558 -11.890 -0.673 -4.942 -0.956 -1.159 0.864 0.284 D 124 120 3 125 6 0 0 232 542 -16.467 -15.165 -7.962 -11.644 -11.662 -0.007 IL 125 125 5 125 6 1 1 237 547 -11.867 -0.298 -2.425 -13.786 -14.562 -14.222 0.000 0.000 0.000 0.000 IR 126 126 6 126 5 1 3 236 546 -1.313 -0.744 -15.975 -14.143 -15.249 0.000 0.000 0.000 0.000 [ MATP 34 ] 150 247 C G = = MP 127 126 6 131 6 2 3 234 544 -7.705 -10.103 -0.018 -7.943 -8.510 -15.472 -4.337 -10.050 -7.786 0.342 -6.556 -11.306 3.171 -6.686 -11.271 0.177 -11.003 -2.576 1.912 -8.625 -1.046 -3.255 ML 128 126 6 131 6 1 1 233 544 -17.036 -17.382 -3.735 -0.122 -17.232 -7.452 -1.308 -2.300 1.698 -2.751 MR 129 126 6 131 6 1 1 236 546 -16.077 -14.806 -9.052 -14.784 -0.006 -8.795 -4.421 -7.217 1.944 -3.323 D 130 126 6 131 6 0 0 232 542 -17.989 -16.688 -8.850 -8.057 -7.634 -0.016 IL 131 131 5 131 6 1 1 234 544 -11.104 -0.952 -1.423 -13.022 -3.191 -13.458 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 233 543 -9.718 -0.003 -13.230 -11.397 -12.503 0.000 0.000 0.000 0.000 [ MATP 35 ] 152 245 g c = = MP 133 132 6 137 6 2 2 232 542 -5.722 -10.194 -0.074 -9.498 -5.270 -8.487 -7.650 -9.298 -3.681 1.490 -10.071 -10.857 1.049 -9.761 -7.229 2.728 -8.133 -4.780 2.086 -8.832 -4.002 -4.307 ML 134 132 6 137 6 1 1 232 543 -6.444 -17.595 -5.287 -0.282 -17.445 -2.832 -2.497 -4.343 -3.354 1.878 MR 135 132 6 137 6 1 1 235 545 -4.145 -4.785 -8.307 -15.408 -0.153 -7.837 -1.299 1.334 0.033 -4.326 D 136 132 6 137 6 0 0 232 542 -18.025 -16.723 -0.746 -4.209 -7.755 -1.536 IL 137 137 5 137 6 1 2 236 546 -0.377 -2.257 -5.605 -17.171 -17.947 -17.608 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 231 541 -2.166 -0.403 -5.606 -14.242 -15.348 0.000 0.000 0.000 0.000 [ MATP 36 ] 159 242 G C = = MP 139 138 6 143 6 2 2 230 540 -7.892 -7.401 -0.036 -6.191 -10.321 -12.942 -15.956 -8.734 -11.840 -3.650 -2.428 -8.402 1.943 -10.007 -11.378 3.435 -9.883 -0.274 -3.678 -7.082 -3.741 -3.713 ML 140 138 6 143 6 1 1 231 541 -0.150 -17.488 -5.641 -4.973 -17.338 -4.422 -1.419 1.595 -1.554 -1.917 MR 141 138 6 143 6 1 1 234 544 -18.576 -4.143 -7.087 -2.921 -0.315 -13.158 1.134 -0.514 -4.955 0.102 D 142 138 6 143 6 0 0 235 545 -18.881 -17.579 -9.135 -14.058 -6.845 -0.015 IL 143 143 5 143 6 1 1 229 539 -2.860 -3.336 -0.390 -15.335 -16.111 -15.771 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 230 540 -1.015 -0.985 -15.771 -13.938 -15.044 0.000 0.000 0.000 0.000 [ MATP 37 ] 162 238 c g = = MP 145 144 6 149 4 2 2 228 538 -8.250 -8.012 -0.011 -11.048 -9.912 -3.574 -6.391 2.006 -7.042 -3.758 2.634 -6.063 -4.530 1.380 -4.553 -3.572 1.396 -10.898 -2.967 -4.331 ML 146 144 6 149 4 1 1 236 546 -0.616 -3.733 -1.906 -7.471 -2.538 0.304 -3.663 1.330 MR 147 144 6 149 4 1 1 233 543 -3.817 -0.307 -7.451 -3.117 1.204 -1.447 0.405 -7.462 D 148 144 6 149 4 0 0 235 545 -0.497 -3.192 -10.408 -2.464 IL 149 149 5 149 4 1 1 238 548 -0.342 -2.294 -7.157 -18.088 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 233 543 -0.217 -3.113 -5.369 0.000 0.000 0.000 0.000 [ MATL 38 ] 171 - C - + - ML 151 150 6 153 3 1 1 226 536 -22.196 -0.000 -13.400 -3.261 1.343 -5.515 0.419 D 152 150 6 153 3 0 0 211 521 -17.440 -1.174 -0.844 IL 153 153 3 153 3 1 1 225 535 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 172 - U - + - ML 154 153 3 156 3 1 1 225 535 -4.739 -0.055 -20.859 -4.445 -3.966 -4.446 1.943 D 155 153 3 156 3 0 0 167 410 -16.613 -0.264 -2.582 IL 156 156 3 156 3 1 1 279 589 -0.086 -4.117 -18.977 0.000 0.000 0.000 0.000 [ MATL 40 ] 193 - u - * - ML 157 156 3 159 3 1 1 168 405 -22.214 -0.000 -20.868 -0.102 -0.039 0.025 0.107 D 158 156 3 159 3 0 0 156 394 -14.034 -1.189 -0.833 IL 159 159 3 159 3 1 1 167 405 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 194 - u - * - ML 160 159 3 162 3 1 1 167 404 -5.098 -0.058 -6.591 -0.102 -0.000 -0.007 0.102 D 161 159 3 162 3 0 0 93 331 -13.204 -2.340 -0.318 IL 162 162 3 162 3 1 1 211 449 -0.112 -3.743 -18.253 0.000 0.000 0.000 0.000 [ MATL 42 ] 209 - a - * - ML 163 162 3 165 3 1 1 65 157 -6.102 -0.021 -12.538 0.324 -0.178 -0.129 -0.074 D 164 162 3 165 3 0 0 29 118 -17.122 -9.619 -0.002 IL 165 165 3 165 3 1 1 84 177 -0.287 -2.472 -15.965 0.000 0.000 0.000 0.000 [ MATL 43 ] 216 - A - + - ML 166 165 3 168 3 1 1 55 136 -6.020 -0.022 -15.382 1.788 -5.078 -0.991 -6.264 D 167 165 3 168 3 0 0 20 101 -17.142 -9.234 -0.002 IL 168 168 3 168 3 1 1 72 153 -0.328 -2.296 -15.870 0.000 0.000 0.000 0.000 [ MATL 44 ] 223 - A - + - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.648 -0.839 -4.026 -2.027 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 46 ] - - - - - - S 173 63 1 174 3 0 4 312 711 -22.216 -0.001 -10.209 IL 174 174 2 174 3 1 5 314 712 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 252 - a - + - ML 175 174 2 177 3 1 4 312 711 -7.340 -0.421 -2.018 0.547 -0.705 -0.098 -0.013 D 176 174 2 177 3 0 2 311 709 -13.434 -7.640 -0.007 IL 177 177 3 177 3 1 5 315 713 -0.586 -1.584 -13.855 0.000 0.000 0.000 0.000 [ MATL 48 ] 256 - G - + - ML 178 177 3 180 2 1 3 312 710 -4.223 -0.079 0.137 -4.252 1.368 -1.905 D 179 177 3 180 2 0 2 311 709 -19.841 -0.000 IL 180 180 3 180 2 1 3 312 710 -2.335 -0.319 0.000 0.000 0.000 0.000 [ BIF 49 ] - - - - - - B 181 180 3 182 238 0 2 311 709 [ BEGL 50 ] - - - - - - S 182 181 1 183 4 0 0 93 204 -1.675 -5.849 -7.063 -0.595 [ MATP 51 ] 260 327 g c = = MP 183 182 1 187 6 2 2 98 210 -6.201 -20.340 -0.020 -13.180 -12.171 -14.624 -7.917 -2.580 -2.479 1.973 -8.380 -7.555 -0.673 -8.813 -9.532 2.899 0.443 -0.855 -1.016 -7.573 0.121 -3.011 ML 184 182 1 187 6 1 1 104 215 -0.738 -1.688 -4.487 -4.784 -17.299 -6.776 -6.188 1.945 -3.640 -4.166 MR 185 182 1 187 6 1 1 103 214 -16.426 -15.155 -1.323 -9.247 -0.750 -7.999 -0.158 -1.178 -3.626 1.368 D 186 182 1 187 6 0 0 82 194 -25.504 -24.203 -13.213 -10.027 -8.385 -0.006 IL 187 187 5 187 6 1 1 104 215 -0.828 -1.196 -12.129 -15.866 -16.642 -16.302 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 101 213 -0.962 -2.095 -1.987 -15.031 -16.137 0.000 0.000 0.000 0.000 [ MATP 52 ] 264 323 g c = = MP 189 188 6 193 6 2 2 96 207 -4.585 -20.382 -0.084 -8.113 -10.678 -6.568 -14.408 -5.518 -10.255 0.721 -9.169 -10.137 1.709 -9.642 -9.509 2.534 -4.253 -2.551 2.222 -9.649 -1.499 -5.713 ML 190 188 6 193 6 1 1 101 212 -16.537 -16.883 -5.674 -0.067 -16.733 -5.293 -3.453 -2.234 1.842 -3.168 MR 191 188 6 193 6 1 1 104 215 -16.223 -14.952 -2.769 -7.989 -0.263 -5.943 -3.174 0.284 -1.667 1.237 D 192 188 6 193 6 0 0 82 193 -25.499 -24.197 -19.994 -13.286 -12.955 -0.000 IL 193 193 5 193 6 1 1 83 194 -12.626 -12.888 -10.806 -14.544 -15.320 -0.001 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 97 208 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 266 322 c g = = MP 195 194 6 199 6 2 2 94 206 -8.180 -20.304 -0.202 -9.409 -10.453 -3.002 -10.093 -5.842 -9.248 1.967 -6.327 -4.810 2.216 -4.090 -7.762 1.915 -3.168 0.610 -0.330 -8.047 0.073 -4.192 ML 196 194 6 199 6 1 1 100 211 -0.259 -16.970 -5.745 -4.255 -3.442 -9.842 -2.809 -1.421 -3.797 1.771 MR 197 194 6 199 6 1 1 104 215 -16.033 -1.367 -10.670 -9.724 -0.774 -5.280 -0.594 0.766 0.668 -4.396 D 198 194 6 199 6 0 0 82 193 -25.536 -24.234 -15.609 -14.263 -5.655 -0.029 IL 199 199 5 199 6 1 1 98 209 -0.451 -14.556 -1.897 -16.212 -16.988 -16.648 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 94 205 -9.144 -0.004 -12.656 -10.823 -11.929 0.000 0.000 0.000 0.000 [ MATP 54 ] 271 320 c g = = MP 201 200 6 205 6 2 2 93 204 -5.714 -5.674 -0.238 -8.816 -10.135 -3.184 -5.344 -4.758 -9.339 -0.788 -2.704 -8.140 2.738 -8.115 -7.702 2.523 -3.415 -1.209 0.732 -6.959 -0.813 -6.924 ML 202 200 6 205 6 1 1 93 205 -13.183 -13.529 -3.670 -0.694 -13.379 -1.722 0.488 -0.020 -2.064 0.456 MR 203 200 6 205 6 1 1 105 217 -17.701 -16.430 -2.894 -11.847 -0.226 -6.655 -2.916 -5.019 -1.197 1.766 D 204 200 6 205 6 0 0 60 169 -25.588 -24.286 -15.315 -15.703 -14.522 -0.000 IL 205 205 5 205 6 1 1 95 206 -1.188 -1.188 -3.037 -14.044 -14.821 -14.481 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 94 205 -1.040 -0.961 -15.730 -13.898 -15.003 0.000 0.000 0.000 0.000 [ MATP 55 ] 274 316 g u = = MP 207 206 6 211 6 2 2 91 203 -4.739 -5.601 -0.209 -8.588 -9.008 -3.786 -7.855 -3.338 -9.735 0.236 -0.899 -2.207 0.879 -5.516 -7.074 2.126 -1.105 2.288 -2.926 -2.101 0.997 -5.429 ML 208 206 6 211 6 1 1 95 206 -13.419 -13.765 -1.946 -1.447 -4.990 -1.547 -0.640 0.960 -1.596 0.114 MR 209 206 6 211 6 1 1 105 216 -17.501 -16.230 -7.666 -16.209 -0.027 -6.190 -4.989 1.777 -5.990 -0.925 D 210 206 6 211 6 0 0 60 169 -25.650 -24.349 -13.054 -14.046 -11.982 -0.001 IL 211 211 5 211 6 1 1 94 205 -0.586 -3.505 -2.025 -15.608 -16.384 -16.045 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 92 203 -0.800 -1.232 -15.664 -13.832 -14.937 0.000 0.000 0.000 0.000 [ MATP 56 ] 279 312 g c = = MP 213 212 6 217 6 2 2 89 201 -4.776 -6.832 -0.714 -9.641 -10.519 -1.543 -5.753 -8.517 -2.186 1.230 -6.995 -2.200 1.668 -4.080 -0.444 2.791 -9.705 -2.928 -0.810 -6.108 -0.239 -0.452 ML 214 212 6 217 6 1 1 98 209 -13.240 -13.586 -2.530 -2.628 -2.141 -1.191 0.920 0.641 -2.155 -1.627 MR 215 212 6 217 6 1 1 104 216 -17.539 -16.268 -6.592 -16.246 -0.256 -2.716 -3.034 1.736 -4.367 -1.005 D 216 212 6 217 6 0 0 57 162 -25.686 -24.385 -13.482 -11.286 -14.437 -0.001 IL 217 217 5 217 6 1 1 94 205 -0.536 -13.909 -1.689 -15.564 -16.340 -16.001 0.000 0.000 0.000 0.000 IR 218 218 6 218 5 1 1 91 202 -9.023 -0.004 -12.534 -10.702 -11.808 0.000 0.000 0.000 0.000 [ MATP 57 ] 284 310 c g = = MP 219 218 6 223 4 2 2 89 201 -3.832 -0.456 -2.317 -17.210 -3.692 -7.948 -8.535 -0.834 -2.341 -4.329 2.719 -8.592 -7.565 0.853 -2.127 -4.720 1.382 -3.292 0.057 1.429 ML 220 218 6 223 4 1 1 95 207 -2.174 -2.288 -0.808 -8.642 -0.064 0.986 -2.690 -0.140 MR 221 218 6 223 4 1 1 104 216 -0.064 -7.809 -4.697 -11.315 1.950 -11.238 -3.061 -5.949 D 222 218 6 223 4 0 0 54 138 -21.258 -5.202 -2.284 -0.382 IL 223 223 5 223 4 1 1 104 215 -0.239 -3.036 -5.034 -18.693 0.000 0.000 0.000 0.000 IR 224 224 6 224 3 1 1 62 144 -3.640 -0.147 -5.894 0.000 0.000 0.000 0.000 [ MATL 58 ] 294 - G - + - ML 225 224 6 227 3 1 1 61 143 -5.154 -0.041 -15.524 -2.242 -1.536 1.188 0.220 D 226 224 6 227 3 0 0 11 87 -22.996 -8.975 -0.003 IL 227 227 3 227 3 1 1 76 158 -0.322 -2.321 -15.294 0.000 0.000 0.000 0.000 [ MATL 59 ] 300 - u - + - ML 228 227 3 230 3 1 1 17 35 -20.738 -0.001 -10.046 -0.114 0.079 -3.054 0.926 D 229 227 3 230 3 0 0 6 24 -22.993 -15.740 -0.000 IL 230 230 3 230 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 301 - A - + - ML 231 230 3 233 3 1 1 16 34 -2.632 -0.426 -3.403 1.165 -0.272 -1.675 -0.697 D 232 230 3 233 3 0 0 2 19 -22.994 -8.356 -0.004 IL 233 233 3 233 3 1 1 17 35 -1.500 -0.754 -4.227 0.000 0.000 0.000 0.000 [ MATL 61 ] 306 - A - + - ML 234 233 3 236 2 1 1 1 1 * 0.000 1.292 -1.509 -0.371 -1.231 D 235 233 3 236 2 0 0 0 0 * 0.000 IL 236 236 3 236 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 237 236 3 -1 0 0 0 0 0 [ BEGR 63 ] - - - - - - S 238 181 1 239 3 0 2 303 702 -22.216 -0.225 -2.793 IL 239 239 2 239 3 1 3 305 703 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 328 - G - + - ML 240 239 2 242 3 1 2 303 702 -0.349 -2.262 -7.270 -0.583 -3.072 1.443 -1.018 D 241 239 2 242 3 0 1 302 700 -8.091 -0.015 -7.180 IL 242 242 3 242 3 1 3 303 701 -6.571 -0.015 -13.969 0.000 0.000 0.000 0.000 [ MATL 65 ] 332 - C - + - ML 243 242 3 245 5 1 3 302 700 -21.139 -0.002 -14.862 -9.233 -16.402 -4.559 1.397 -1.025 -0.264 D 244 242 3 245 5 0 0 303 701 -14.344 -0.151 -13.605 -3.481 -6.702 IL 245 245 3 245 5 1 1 306 705 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 333 427 G C = = MP 246 245 3 250 6 2 4 301 699 -8.613 -8.393 -0.008 -14.820 -13.400 -16.433 -13.497 -6.648 -10.446 0.991 -12.445 -8.740 -0.396 -3.540 -6.205 3.197 -6.842 1.881 -2.106 -11.015 -5.300 -5.692 ML 247 245 3 250 6 1 1 320 719 -8.421 -8.767 -1.746 -1.388 -8.617 -1.681 -0.197 -0.331 0.155 0.286 MR 248 245 3 250 6 1 1 314 713 -14.690 -13.419 -5.685 -8.881 -0.102 -4.427 -1.858 -1.581 -2.252 1.669 D 249 245 3 250 6 0 0 331 729 -12.492 -11.191 -1.927 -4.220 -7.687 -0.561 IL 250 250 5 250 6 1 2 300 698 -10.234 -10.497 -0.003 -12.152 -12.928 -12.589 0.000 0.000 0.000 0.000 IR 251 251 6 251 5 1 2 300 698 -9.048 -0.004 -13.077 -11.245 -12.351 0.000 0.000 0.000 0.000 [ MATP 67 ] 335 424 c g = = MP 252 251 6 256 6 2 3 299 697 -8.488 -7.000 -0.017 -14.236 -10.002 -16.986 -7.297 -7.085 -5.511 1.088 -6.301 -5.796 2.923 -7.969 -7.677 0.939 -10.900 -0.115 1.396 -7.377 -0.585 -3.814 ML 253 251 6 256 6 1 1 300 698 -9.004 -9.350 -1.706 -0.559 -9.200 -6.729 1.023 -0.222 -0.968 -0.739 MR 254 251 6 256 6 1 1 311 710 -14.653 -0.422 -4.893 -8.302 -2.275 -6.649 -1.598 1.635 -1.645 -2.036 D 255 251 6 256 6 0 0 337 736 -13.684 -12.383 -4.754 -5.637 -5.471 -0.120 IL 256 256 5 256 6 1 2 298 696 -10.358 -2.124 -0.378 -12.276 -13.052 -12.712 0.000 0.000 0.000 0.000 IR 257 257 6 257 5 1 2 298 696 -2.189 -0.568 -3.240 -13.356 -14.462 0.000 0.000 0.000 0.000 [ MATP 68 ] 337 421 g c = = MP 258 257 6 262 6 2 4 296 695 -4.803 -8.118 -0.074 -6.663 -10.284 -21.462 -6.052 -4.240 -6.969 2.086 -9.359 -10.609 0.941 -8.162 -10.588 2.884 -7.495 0.194 0.136 -10.865 -3.363 -5.319 ML 259 257 6 262 6 1 1 298 697 -13.547 -0.110 -4.537 -5.056 -13.743 -11.272 1.402 -4.805 0.268 -3.084 MR 260 257 6 262 6 1 1 331 729 -14.041 -12.770 -1.601 -5.663 -0.950 -2.913 -2.663 0.461 -0.297 0.724 D 261 257 6 262 6 0 0 339 737 -13.800 -12.498 -8.295 -8.978 -8.995 -0.011 IL 262 262 5 262 6 1 3 295 694 -1.374 -15.002 -0.703 -16.657 -17.433 -17.094 0.000 0.000 0.000 0.000 IR 263 263 6 263 5 1 2 295 693 -1.661 -0.549 -14.359 -12.527 -13.633 0.000 0.000 0.000 0.000 [ MATP 69 ] 342 418 G C = = MP 264 263 6 268 6 2 3 293 692 -8.342 -8.585 -0.013 -8.225 -16.476 -15.644 -16.022 -3.522 -15.840 1.480 -11.670 -10.175 -3.087 -16.531 -8.568 3.685 -10.451 -7.024 -3.270 -10.199 -5.386 -13.448 ML 265 263 6 268 6 1 1 329 727 -16.295 -16.642 -8.155 -0.007 -16.491 -9.881 -8.670 1.989 -5.986 -6.266 MR 266 263 6 268 6 1 1 337 735 -14.149 -12.878 -6.579 -5.974 -0.056 -6.426 -4.354 0.932 -3.842 0.981 D 267 263 6 268 6 0 0 339 737 -14.768 -13.466 -9.263 -9.945 -9.963 -0.005 IL 268 268 5 268 6 1 2 292 691 -10.490 -10.753 -0.002 -12.408 -13.184 -12.844 0.000 0.000 0.000 0.000 IR 269 269 6 269 5 1 1 292 691 -9.361 -0.003 -12.872 -11.040 -12.146 0.000 0.000 0.000 0.000 [ MATP 70 ] 344 416 G C = = MP 270 269 6 274 4 2 2 291 690 -8.023 -5.215 -0.090 -5.082 -18.288 -7.673 -9.201 -5.452 -20.578 -14.754 -15.898 -6.457 -7.666 3.964 -1.645 -6.541 -6.255 -6.886 -17.814 -10.142 ML 271 269 6 274 4 1 1 328 726 -0.331 -13.974 -7.684 -2.323 1.580 -9.278 -8.929 0.009 MR 272 269 6 274 4 1 1 336 734 -1.812 -11.162 -5.788 -0.521 -6.406 1.685 -0.862 -2.171 D 273 269 6 274 4 0 0 339 737 -10.353 -10.035 -6.593 -0.018 IL 274 274 5 274 4 1 1 323 721 -0.405 -2.305 -5.075 -6.295 0.000 0.000 0.000 0.000 IR 275 275 6 275 3 1 1 319 717 -0.177 -3.419 -5.513 0.000 0.000 0.000 0.000 [ MATL 71 ] 350 - U - + - ML 276 275 6 278 3 1 1 279 677 -8.496 -0.091 -4.098 -5.789 -8.285 -8.043 1.991 D 277 275 6 278 3 0 0 339 737 -19.037 -7.745 -0.007 IL 278 278 3 278 3 1 1 174 573 -8.364 -0.005 -11.064 0.000 0.000 0.000 0.000 [ MATL 72 ] 352 - U - + - ML 279 278 3 281 3 1 2 80 423 -22.068 -0.000 -20.723 -8.393 -7.125 -5.806 1.990 D 280 278 3 281 3 0 0 339 738 -1.015 -6.238 -1.024 IL 281 281 3 281 3 1 3 354 753 -0.067 -4.468 -19.698 0.000 0.000 0.000 0.000 [ MATL 73 ] 377 - C - + - ML 282 281 3 284 3 1 1 79 226 -10.052 -0.002 -12.597 -5.481 1.950 -5.886 -3.348 D 283 281 3 284 3 0 0 129 277 -0.841 -10.074 -1.182 IL 284 284 3 284 3 1 1 134 281 -0.180 -3.139 -8.031 0.000 0.000 0.000 0.000 [ MATL 74 ] 389 - G - + - ML 285 284 3 287 3 1 2 32 84 -10.109 -0.001 -20.838 -0.228 -5.278 1.634 -5.947 D 286 284 3 287 3 0 0 47 100 -1.446 -1.641 -1.679 IL 287 287 3 287 3 1 1 50 103 -0.502 -1.767 -14.582 0.000 0.000 0.000 0.000 [ MATL 75 ] 394 - A - + - ML 288 287 3 290 3 1 1 29 77 -8.712 -0.003 -15.547 1.980 -5.837 -5.657 -5.876 D 289 287 3 290 3 0 0 43 91 -0.309 -3.825 -3.031 IL 290 290 3 290 3 1 1 44 91 -0.561 -1.634 -14.268 0.000 0.000 0.000 0.000 [ MATL 76 ] 399 - a - + - ML 291 290 3 293 3 1 1 7 16 -8.605 -0.011 -7.694 0.921 -1.371 -0.159 -0.278 D 292 290 3 293 3 0 0 5 14 -13.462 -0.086 -4.111 IL 293 293 3 293 3 1 1 9 18 -2.956 -0.200 -11.209 0.000 0.000 0.000 0.000 [ MATL 77 ] 402 - U - + - ML 294 293 3 296 2 1 1 1 1 * 0.000 -3.996 -1.674 -7.084 1.855 D 295 293 3 296 2 0 0 0 0 * 0.000 IL 296 296 3 296 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 78 ] - - - - - - E 297 296 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME bact-030216 LENG 93 MAXL 365 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Wed Mar 2 10:20:47 2016 COM [1] cmbuild -F --enone --hand bact-030216.cm bact-030216.sto NSEQ 73969 EFFN 103.278389 CKSUM 3791442110 STATS LOCAL MSV -8.9335 0.71867 STATS LOCAL VITERBI -9.9267 0.71867 STATS LOCAL FORWARD -3.1176 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54293 1.30704 1.21114 1.52432 1.38629 1.38629 1.38629 1.38629 0.44369 1.12009 3.43942 0.18626 1.77231 0.00000 * 1 2.50497 2.47662 0.23712 3.09236 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00479 5.73305 6.47413 0.49004 0.94830 1.09861 0.40547 2 2.37195 1.13378 0.61039 3.17612 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00942 4.90330 6.23921 0.22665 1.59554 1.30385 0.31675 3 1.22882 1.52422 0.83738 2.86952 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01727 4.63885 4.89966 0.33802 1.24891 1.49567 0.25373 4 1.93576 1.47872 0.68668 2.08335 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00958 5.07120 5.72680 0.60617 0.78842 2.40143 0.09496 5 1.59764 1.01540 1.16931 2.08113 12 c = - ( 1.38629 1.38629 1.38629 1.38629 0.00791 5.70921 5.38979 0.47678 0.96964 2.25095 0.11127 6 1.42428 1.49096 1.25843 1.38606 14 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03677 3.43097 5.58613 0.55974 0.84713 1.32987 0.30722 7 1.76464 3.41202 0.47841 1.73722 19 G = - ( 1.38629 1.38629 1.38629 1.38629 0.05232 3.37223 4.09462 0.54970 0.86068 2.17727 0.12031 8 3.62820 4.62145 3.44683 0.07069 24 U + - , 1.38629 1.38629 1.38629 1.38629 0.02193 4.17864 5.05661 1.21746 0.35095 0.07438 2.63554 9 0.54390 2.99250 1.25856 2.46164 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.02587 5.16512 3.92098 0.56223 0.84383 0.25463 1.49257 10 2.43252 2.40975 0.23863 3.36285 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.01952 4.17576 5.52930 0.53091 0.88690 1.21612 0.35151 11 2.57209 0.57927 2.23425 1.36162 37 C = - < 1.38629 1.38629 1.38629 1.38629 0.01601 4.99805 4.69613 0.63434 0.75563 2.62170 0.07546 12 2.85931 1.39514 1.62181 0.69845 40 u = - < 1.38629 1.38629 1.38629 1.38629 0.01154 5.31315 5.02814 0.33342 1.26042 0.92406 0.50568 13 2.02051 0.69190 1.63968 1.75593 42 C = - < 1.38629 1.38629 1.38629 1.38629 0.03259 3.54313 5.76343 1.71046 0.19941 0.73404 0.65386 14 0.14221 2.87630 4.05673 2.83167 50 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00932 7.02159 4.78123 1.46634 0.26236 0.98520 0.46739 15 1.36383 2.51840 0.45618 3.50552 51 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01588 7.01879 4.20889 1.46634 0.26236 1.16224 0.37511 16 2.73580 1.19886 2.93892 0.54353 52 U + - _ 1.38629 1.38629 1.38629 1.38629 0.64043 3.42865 0.81983 2.69596 0.06986 3.39029 0.03428 17 2.88792 1.62964 4.22532 0.30967 68 U + - _ 1.38629 1.38629 1.38629 1.38629 0.27467 1.43928 5.78345 0.65774 0.72986 0.03877 3.26933 18 4.13793 5.83035 0.04510 3.68070 76 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03335 3.52832 5.66926 2.48363 0.08713 1.82758 0.17531 19 5.22751 6.78019 0.00813 6.43933 90 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00279 7.01694 6.27228 1.46634 0.26236 0.95379 0.48658 20 2.51979 1.48029 2.17127 0.54832 91 U + - _ 1.38629 1.38629 1.38629 1.38629 0.84484 0.56321 6.91500 0.70774 0.67877 0.18592 1.77394 21 0.24135 3.16963 1.98428 3.35427 109 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06585 3.07253 4.04970 2.70668 0.06909 1.18222 0.36614 22 1.06449 3.08607 0.62828 2.57824 131 G = - > 1.38629 1.38629 1.38629 1.38629 0.01794 4.62985 4.82564 0.89630 0.52438 1.37190 0.29253 23 0.86588 1.66034 1.13622 2.68509 135 a = - > 1.38629 1.38629 1.38629 1.38629 0.01073 4.65177 6.78661 0.40400 1.10156 1.34159 0.30304 24 1.45883 2.27892 0.55086 2.42312 138 G = - > 1.38629 1.38629 1.38629 1.38629 0.01447 4.36598 6.39968 0.37302 1.16684 1.34689 0.30117 25 3.46351 0.33687 2.36702 1.82686 141 C = - > 1.38629 1.38629 1.38629 1.38629 0.01360 5.67071 4.59897 0.45611 1.00443 0.14962 1.97353 26 0.78515 2.45504 0.85767 3.38313 143 a + - , 1.38629 1.38629 1.38629 1.38629 0.01455 4.33220 6.64133 0.77386 0.61847 0.32688 1.27716 27 1.95261 0.75300 1.72957 1.56166 148 c = - < 1.38629 1.38629 1.38629 1.38629 0.01730 4.74690 4.77134 0.19245 1.74262 1.39815 0.28376 28 2.40639 0.62142 2.32572 1.29110 150 C = - < 1.38629 1.38629 1.38629 1.38629 0.00869 5.29782 5.61378 0.32427 1.28394 2.57564 0.07916 29 1.70780 2.00525 0.88184 1.30900 152 g = - < 1.38629 1.38629 1.38629 1.38629 0.05232 3.92070 3.46904 1.47064 0.26108 1.40524 0.28145 30 3.51368 1.42619 0.35689 3.50177 159 G = - < 1.38629 1.38629 1.38629 1.38629 0.02430 3.84581 5.93733 0.21745 1.63254 1.06093 0.42485 31 1.38856 0.98980 1.71952 1.61063 162 c = - < 1.38629 1.38629 1.38629 1.38629 0.01755 4.14855 6.43329 1.84335 0.17231 0.48134 0.96222 32 3.40674 0.46896 4.69011 1.10259 171 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00497 7.02340 5.50606 1.46634 0.26236 0.64463 0.74414 33 4.13178 3.87195 4.27026 0.05219 172 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.28031 7.02622 2.84332 0.06000 0.35165 1.21579 34 1.43181 1.43000 1.39066 1.29863 193 u * - _ 1.38629 1.38629 1.38629 1.38629 0.00177 7.03253 7.03253 1.46634 0.26236 1.00133 0.45790 35 1.43175 1.40514 1.41183 1.30166 194 u * - _ 1.38629 1.38629 1.38629 1.38629 0.04142 3.52284 4.50497 2.58235 0.07861 1.18892 0.36320 36 1.16306 1.52112 1.49096 1.41120 209 a * - _ 1.38629 1.38629 1.38629 1.38629 0.01636 4.18860 6.85378 1.70611 0.20037 2.70602 0.06914 37 0.15527 4.56843 2.06512 5.01519 216 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01706 4.13491 6.99799 1.58802 0.22857 2.41502 0.09361 38 0.25012 1.98253 3.96011 2.74091 223 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05884 2.99746 4.92997 1.90949 0.16035 0.19291 1.74042 39 1.68228 1.74998 0.95763 1.36074 238 g = - > 1.38629 1.38629 1.38629 1.38629 0.03366 4.60133 3.76945 0.76955 0.62217 0.42983 1.05160 40 3.29041 0.44242 1.47159 2.39999 242 C = - > 1.38629 1.38629 1.38629 1.38629 0.02365 3.93656 5.55905 0.31702 1.30312 1.68148 0.20592 41 1.37048 0.88869 1.92085 1.66952 245 c = - > 1.38629 1.38629 1.38629 1.38629 0.00641 5.46911 6.13236 0.38388 1.14324 1.65502 0.21207 42 1.42567 2.53643 0.55270 2.25272 247 G = - > 1.38629 1.38629 1.38629 1.38629 0.01522 4.25441 7.00891 0.57560 0.82638 0.26351 1.46254 43 1.60209 2.35593 0.75258 1.45857 251 g = - > 1.38629 1.38629 1.38629 1.38629 0.00177 7.03035 7.02816 1.46634 0.26236 0.55476 0.85380 44 1.02006 1.85590 1.47007 1.37355 252 a + - , 1.38629 1.38629 1.38629 1.38629 0.28760 4.97098 1.41468 1.13373 0.38836 1.36813 0.29381 45 1.31942 3.92633 0.44380 2.63943 256 G + - , 1.38629 1.38629 1.38629 1.38629 1.66700 3.09860 0.26647 0.29118 1.37586 0.35177 1.21552 46 1.40260 2.40820 0.60713 2.12734 260 G = - < 1.38629 1.38629 1.38629 1.38629 0.06715 3.13171 3.84914 0.85984 0.55031 4.97656 0.00692 47 2.11103 1.50726 1.03760 1.19380 264 g = - < 1.38629 1.38629 1.38629 1.38629 0.01622 5.97482 4.30177 1.46634 0.26236 5.84236 0.00291 48 1.45118 1.28993 1.19481 1.67314 266 g = - < 1.38629 1.38629 1.38629 1.38629 0.20905 3.34578 1.87463 1.32229 0.30996 5.35782 0.00472 49 2.49422 0.95218 1.07457 1.66023 271 c = - < 1.38629 1.38629 1.38629 1.38629 0.13711 3.87627 2.23118 0.70231 0.68407 5.36809 0.00467 50 1.94689 1.63879 0.79651 1.55038 274 g = - < 1.38629 1.38629 1.38629 1.38629 0.11844 3.27377 2.60596 1.12164 0.39415 6.52479 0.00147 51 1.65412 1.49043 0.97836 1.57245 279 g = - < 1.38629 1.38629 1.38629 1.38629 0.44499 3.29596 1.13278 1.19173 0.36197 3.94813 0.01948 52 1.96804 1.11038 1.71070 1.04955 284 u = - < 1.38629 1.38629 1.38629 1.38629 0.15113 1.99979 5.31883 1.78190 0.18430 1.46534 0.26266 53 2.48710 2.36242 0.60200 1.29119 294 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03184 3.54245 6.03419 1.60262 0.22485 6.14803 0.00214 54 1.43578 1.35222 2.91574 0.80019 300 u + - _ 1.38629 1.38629 1.38629 1.38629 0.00566 6.04327 5.72335 1.46634 0.26236 6.56270 0.00141 55 0.65057 1.59585 2.34409 1.71711 301 A + - _ 1.38629 1.38629 1.38629 1.38629 0.27398 1.86410 2.46964 0.40115 1.10730 5.40947 0.00448 56 0.56227 2.26795 1.66627 1.98332 306 A + - _ 1.38629 1.38629 1.38629 1.38629 1.63837 0.99971 0.82618 0.11087 2.25435 4.01744 0.01816 57 1.41883 1.86940 0.97834 1.47906 310 g = - > 1.38629 1.38629 1.38629 1.38629 0.09674 4.26478 2.54905 0.53027 0.88782 2.38212 0.09690 58 1.88278 1.05579 1.31397 1.46462 312 c = - > 1.38629 1.38629 1.38629 1.38629 0.03844 3.44517 5.14778 0.90923 0.51556 3.63579 0.02672 59 2.07526 1.28395 1.31184 1.11410 316 u = - > 1.38629 1.38629 1.38629 1.38629 0.04135 3.29948 5.62426 0.72938 0.65818 3.12264 0.04504 60 1.86936 1.19658 0.88990 2.01849 320 g = - > 1.38629 1.38629 1.38629 1.38629 0.09670 4.62450 2.49657 0.50293 0.92826 2.87937 0.05781 61 2.14457 1.46911 1.08452 1.15618 322 g = - > 1.38629 1.38629 1.38629 1.38629 0.00639 5.90749 5.61239 1.46634 0.26236 3.15746 0.04346 62 1.29571 1.11091 1.37312 1.93989 323 c = - > 1.38629 1.38629 1.38629 1.38629 0.04055 3.52750 4.56955 0.53383 0.88274 6.51287 0.00149 63 2.84997 0.75940 1.67683 1.24744 327 c = - > 1.38629 1.38629 1.38629 1.38629 0.51169 5.98174 0.92132 1.46634 0.26236 0.00714 4.94601 64 1.78452 3.35524 0.39573 2.08719 328 G + - , 1.38629 1.38629 1.38629 1.38629 1.49253 0.26417 4.91231 0.01321 4.33357 0.01923 3.96104 65 3.97690 0.43216 2.12542 1.54755 332 C + - , 1.38629 1.38629 1.38629 1.38629 0.00346 7.02736 5.96479 1.46634 0.26236 0.30204 1.34441 66 2.01070 2.84162 0.24886 3.57254 333 G = - < 1.38629 1.38629 1.38629 1.38629 0.00440 5.68734 6.91075 0.45884 0.99972 1.64348 0.21481 67 1.96683 0.78363 1.70878 1.50388 335 c = - < 1.38629 1.38629 1.38629 1.38629 0.00548 5.62292 6.29447 0.43308 1.04557 0.65632 0.73139 68 1.33112 2.12990 0.62420 2.50989 337 G = - < 1.38629 1.38629 1.38629 1.38629 0.03835 3.32549 6.39610 0.51193 0.91463 1.12731 0.39142 69 1.70268 3.77150 0.25657 3.85909 342 G = - < 1.38629 1.38629 1.38629 1.38629 0.00481 5.55320 6.98915 0.40653 1.09649 1.21918 0.35023 70 4.29143 5.63066 0.02373 5.08670 344 G = - < 1.38629 1.38629 1.38629 1.38629 0.05325 4.20556 3.29824 1.38056 0.28960 1.50901 0.24991 71 4.69166 5.07996 5.54709 0.01948 350 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01590 5.62099 4.41005 0.44648 1.02131 3.62482 0.02702 72 5.11938 4.88860 4.90608 0.02113 352 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05271 2.98742 6.98451 3.04250 0.04889 0.58429 0.81531 73 4.88768 0.03982 5.15547 3.66000 377 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02906 3.59030 6.85558 2.04238 0.13894 1.07007 0.42005 74 1.55031 4.54684 0.26484 4.61619 389 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01079 4.62114 7.01998 0.99390 0.46224 0.20741 1.67497 75 0.01897 5.11764 5.01741 5.08663 394 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00963 4.74676 7.01025 0.92678 0.50389 1.06674 0.42179 76 0.77508 2.26358 1.50975 1.53995 399 a + - _ 1.38629 1.38629 1.38629 1.38629 0.00906 5.68387 5.18189 0.53026 0.88782 0.73056 0.65709 77 3.91343 2.53690 5.30098 0.10989 402 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04457 3.24416 5.38342 2.12324 0.12743 0.27470 1.42627 78 5.72307 0.03742 3.83344 4.43730 416 C = - > 1.38629 1.38629 1.38629 1.38629 0.01411 5.67877 4.54723 0.45592 1.00475 0.41881 1.07245 79 4.14573 0.25122 3.86218 1.68581 418 C = - > 1.38629 1.38629 1.38629 1.38629 0.00541 5.41595 6.95929 0.68905 0.69726 0.16978 1.85695 80 2.62228 0.75945 2.06204 1.10188 421 c = - > 1.38629 1.38629 1.38629 1.38629 0.01173 4.53214 7.00553 0.36198 1.19170 1.10868 0.40047 81 1.74022 2.05710 0.69558 1.61994 424 g = - > 1.38629 1.38629 1.38629 1.38629 0.00471 5.57465 7.00152 0.41419 1.08139 1.02238 0.44588 82 3.73457 0.56985 2.84923 1.04238 427 C = - > 1.38629 1.38629 1.38629 1.38629 0.04235 3.26894 5.67744 0.18039 1.80146 1.02690 0.44334 83 1.75693 0.65928 3.24480 1.30480 431 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01483 4.59859 5.36935 0.16735 1.87020 0.67069 0.71612 84 1.71242 1.30108 1.22588 1.37108 433 g = - ) 1.38629 1.38629 1.38629 1.38629 0.00825 4.93199 6.90391 0.48996 0.94843 0.65103 0.73712 85 2.27342 1.23185 0.96211 1.49968 436 g = - ) 1.38629 1.38629 1.38629 1.38629 0.00799 5.01114 6.64831 0.24702 1.51926 0.77683 0.61593 86 2.22790 0.72222 1.40730 1.82159 438 c = - ) 1.38629 1.38629 1.38629 1.38629 0.00586 5.55464 6.22694 0.40711 1.09533 0.83248 0.57087 87 2.96391 0.98330 1.47157 1.06495 440 c = - ) 1.38629 1.38629 1.38629 1.38629 0.00458 5.68438 6.74838 0.45890 0.99962 0.69851 0.68781 88 3.54950 0.70392 1.10049 1.93858 442 c = - ) 1.38629 1.38629 1.38629 1.38629 0.00443 5.64447 7.02717 0.44243 1.02855 0.82692 0.57517 89 2.84340 0.29812 2.67529 2.03505 444 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04180 3.21870 6.98099 0.11218 2.24318 1.08511 0.41228 90 0.73103 2.78736 1.22354 1.81511 447 a + - : 1.38629 1.38629 1.38629 1.38629 0.00285 6.55672 6.55672 1.46634 0.26236 1.08702 0.41131 91 6.65108 0.00480 6.98218 5.96668 448 C * - : 1.38629 1.38629 1.38629 1.38629 0.00285 6.55674 6.55674 1.46634 0.26236 1.09861 0.40547 92 6.65108 0.00480 6.98218 5.96668 449 C * - : 1.38629 1.38629 1.38629 1.38629 0.00285 6.55674 6.55674 1.46634 0.26236 1.09861 0.40547 93 0.00359 7.06189 6.55173 6.64286 450 A * - : 1.38629 1.38629 1.38629 1.38629 0.00142 6.55532 * 1.46634 0.26236 0.00000 * // 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                                                                                                                                                                                                                                                  8?&8?S8?S 4u!4[>u>>J>ph> L]m"8?Lbact-ValC#@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            G8?8?aTf8?t  Yo> €>9>ðp>tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Arg.cm0000644000543100007160000017236612573631650021127 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Arg-2nd-align STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Arg-final-vert.cm ../Arg-2nd-align.sto COM [2] cmcalibrate --seed 208 Arg-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 358479052 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.8855 0.71857 ECMLC 0.63036 -6.72580 2.65936 1600000 445123 0.002696 ECMGC 0.29686 -40.57749 -25.09780 1600000 39606 0.010099 ECMLI 0.59346 -6.61368 3.19992 1600000 405993 0.002956 ECMGI 0.31855 -36.24971 -21.90483 1600000 38601 0.010362 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 120 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 18 40 100 122 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 41 100 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - a - + MR 3 2 3 5 5 26 48 99 120 -15.061 -0.000 -14.876 -15.088 -15.980 0.876 -2.137 -2.406 0.806 D 4 2 3 5 5 16 36 97 119 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 40 99 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 A U = = MP 6 5 3 10 6 26 48 98 119 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 0.041 -2.520 -3.689 3.156 -2.099 -10.583 -6.266 -2.723 -3.982 0.043 -10.467 -0.922 1.858 -3.929 -8.103 -3.420 ML 7 5 3 10 6 18 38 96 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 18 38 96 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 15 34 93 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 39 97 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 97 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 G C = = MP 12 11 6 16 6 26 46 96 117 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.086 -2.489 -9.787 1.313 -10.918 -10.381 -0.997 -10.477 -10.224 3.599 -10.470 -1.804 -1.829 -5.547 -7.991 -8.752 ML 13 11 6 16 6 17 38 94 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 37 94 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 15 34 91 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 18 39 95 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 39 95 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 99 G C = = MP 18 17 6 22 6 24 44 94 115 -15.995 -5.095 -0.043 -14.710 -14.990 -15.385 -9.963 -2.301 -3.545 2.343 -10.912 -5.825 -3.477 -4.757 -5.092 3.235 -10.466 -0.819 -1.169 -6.013 -7.986 -5.959 ML 19 17 6 22 6 17 37 92 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 37 92 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 14 33 89 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 18 38 93 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 42 93 114 -6.843 -0.020 -10.354 -8.522 -9.627 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 u a = = MP 24 23 6 28 6 23 42 92 113 -15.995 -4.834 -0.052 -14.710 -14.990 -15.385 -5.322 -2.823 -6.238 1.061 -0.841 -4.972 1.101 -2.719 -4.003 1.657 -6.478 -3.244 2.745 -3.805 -0.658 -3.249 ML 25 23 6 28 6 17 37 90 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 37 90 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 14 33 87 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 18 38 91 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 41 91 112 -7.092 -0.016 -10.604 -8.771 -9.877 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 A U = = MP 30 29 6 34 6 21 40 90 111 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -1.518 0.219 -4.478 3.169 -3.048 -3.096 -2.234 -4.812 -6.864 1.831 -10.312 -1.004 -1.550 -2.482 -6.052 -1.475 ML 31 29 6 34 6 17 36 88 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 36 88 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 14 33 86 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 89 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 89 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 g c = = MP 36 35 6 40 6 19 38 88 109 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -5.780 -0.392 -9.723 2.614 -3.068 -6.649 -0.868 -1.616 -10.140 2.633 -10.405 -1.699 -0.185 -1.745 -4.264 -1.517 ML 37 35 6 40 6 16 36 87 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 16 35 86 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 14 33 85 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 36 87 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 87 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 U A = = MP 42 41 6 46 4 17 36 86 107 -15.218 -15.425 -0.000 -13.839 -10.303 -10.005 -5.581 -2.217 -4.998 -6.107 1.146 -4.985 -10.160 -0.020 -10.673 -7.572 3.598 -4.702 -1.862 -4.086 ML 43 41 6 46 4 16 35 86 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 15 34 85 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 14 33 84 106 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 35 87 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 35 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 15 34 84 105 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 49 47 6 50 3 13 32 82 104 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 34 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 14 33 83 104 -16.782 -0.000 1.980 -5.794 -4.764 -11.031 D 52 50 3 53 2 13 32 82 103 -8.445 -0.004 IL 53 53 3 53 2 14 33 83 105 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 32 82 103 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 48 69 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 48 69 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 30 51 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 28 G C = = MP 58 57 1 62 6 2 3 30 51 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.011 -3.970 -10.259 -0.328 -11.423 -3.813 -6.492 -10.903 -5.776 3.571 -10.850 1.474 -6.751 -5.858 -8.500 -2.173 ML 59 57 1 62 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 29 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 U A = = MP 64 63 6 68 6 2 3 28 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -4.106 -12.508 -2.588 -11.630 -12.468 -9.537 -12.588 -11.733 3.976 -12.881 -4.786 -11.270 ML 65 63 6 68 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 26 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 24 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 27 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 C G = = MP 70 69 6 74 6 2 3 26 47 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -2.284 -13.327 -4.769 -9.564 -0.991 -12.508 3.043 -3.687 -12.467 -9.535 -12.587 -11.731 2.774 -12.880 -3.416 -11.269 ML 71 69 6 74 6 1 1 25 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 25 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 23 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 25 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 U A = = MP 76 75 6 80 4 2 3 24 45 -15.218 -15.425 -0.000 -13.839 -5.287 -13.327 -12.364 -3.076 1.514 -12.508 -3.006 -11.630 -12.468 -9.536 -12.588 -11.729 3.673 -12.881 -4.043 -4.052 ML 77 75 6 80 4 1 1 24 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 24 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 23 44 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 25 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 22 43 -16.127 -0.000 -14.781 1.972 -11.455 -5.729 -4.132 D 83 81 6 84 3 0 0 20 42 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 21 42 -16.127 -1.021 -0.979 1.910 -3.438 -3.474 -4.091 D 86 84 3 87 3 0 0 20 41 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 23 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 20 41 -15.106 -1.020 -0.980 -0.837 0.853 -4.977 0.680 D 89 87 3 90 3 0 0 19 40 -16.568 -12.081 -0.000 IL 90 90 3 90 3 1 1 22 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 19 40 -4.014 -7.189 -0.103 -9.845 0.941 -10.976 1.055 D 92 90 3 93 3 0 0 19 40 -17.145 -0.210 -2.882 IL 93 93 3 93 3 1 1 20 42 -4.901 -0.057 -7.601 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 2 19 41 -15.552 -0.000 -14.206 1.483 -4.909 0.226 -10.151 D 95 93 3 96 3 0 0 17 38 -15.942 -1.514 -0.622 IL 96 96 3 96 3 1 1 21 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - a - + - ML 97 96 3 99 3 1 1 18 40 -15.781 -1.801 -0.488 0.972 0.246 -2.389 -0.598 D 98 96 3 99 3 0 0 11 32 -15.321 -10.834 -0.001 IL 99 99 3 99 3 1 1 21 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - c - + - ML 100 99 3 102 3 1 1 19 40 -2.923 -0.204 -12.634 -1.270 0.924 -7.195 0.749 D 101 99 3 102 3 0 0 6 28 -17.177 -0.000 -11.569 IL 102 102 3 102 3 1 1 20 41 -1.250 -0.791 -9.282 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.930 -3.653 -5.949 -3.434 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - + - ML 109 108 2 111 5 1 1 26 45 -15.061 -0.000 -14.876 -15.088 -15.980 1.406 -0.360 -2.896 -1.198 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 a u = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -2.634 -3.093 -7.404 2.480 -0.618 -4.714 -0.584 -3.379 -5.763 1.490 -8.045 -2.244 2.451 -5.008 -3.929 -3.679 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 u a = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.268 -5.448 -10.272 1.353 -3.259 -6.702 2.539 -4.871 -10.133 -0.859 -10.648 -2.916 2.661 -10.454 -1.437 -3.575 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.032 -13.329 -12.364 -9.565 -3.484 -3.732 -2.251 -11.630 -12.468 -9.537 -12.588 -11.733 3.944 -7.645 -3.350 -11.270 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.157 -4.251 -13.934 1.443 -15.078 -12.069 -2.920 -13.903 -11.877 3.689 -12.177 -2.333 -10.023 -12.380 -12.035 -12.620 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.037 -1.073 -12.232 3.835 -14.373 -15.528 -9.831 -12.275 -11.792 0.001 -12.462 -5.334 -2.572 -5.018 -11.661 -5.046 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -12.202 -2.607 -13.204 1.939 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -13.413 -12.032 -14.990 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -12.742 -5.068 -13.918 1.989 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -11.656 1.990 -12.137 -5.259 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -5.228 -12.430 1.990 -11.403 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.096 -11.071 0.897 -10.981 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -3.462 1.966 -11.127 -10.149 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 49 69 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 4 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 3 49 69 -16.127 -0.002 -9.791 1.737 -1.622 -4.762 -1.719 D 167 165 2 168 3 0 1 47 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - + - ML 169 168 3 171 2 1 2 48 68 -16.781 -0.000 1.245 -4.828 0.643 -4.898 D 170 168 3 171 2 0 1 47 67 -8.678 -0.004 IL 171 171 3 171 2 1 2 49 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 47 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 33 53 -16.127 -0.149 -3.348 IL 230 230 2 230 3 1 3 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 3 33 53 -5.497 -0.032 -14.632 1.838 -2.525 -3.342 -2.713 D 232 230 2 233 3 0 1 33 53 -0.005 -9.716 -8.594 IL 233 233 3 233 3 1 2 33 53 -7.757 -0.008 -10.457 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 3 32 52 -15.061 -0.000 -14.876 -15.088 -15.980 -1.960 -0.174 -5.656 1.504 D 235 233 3 236 5 0 0 31 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 33 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 92 U A = = MP 237 236 3 241 6 2 3 31 51 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.072 -11.991 -11.743 -2.977 -3.851 -3.993 2.440 -11.119 -11.729 -3.413 -12.033 -9.783 3.308 -6.160 -1.747 -10.488 ML 238 236 3 241 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 91 a u = = MP 243 242 6 247 6 2 3 29 49 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.960 -3.310 -9.780 2.896 -10.889 -3.973 -0.061 -4.150 -10.215 2.193 -10.464 -0.128 0.776 -5.672 -3.310 -4.276 ML 244 242 6 247 6 1 1 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 90 U A = = MP 249 248 6 253 6 2 2 27 47 -15.995 -15.934 -0.007 -14.710 -14.990 -7.635 -6.146 -9.994 -4.611 -1.465 -4.162 -11.136 0.371 -5.823 -4.761 -1.231 -10.664 -4.848 3.734 -10.475 -1.602 -3.673 ML 250 248 6 253 6 1 1 26 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 27 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 27 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 73 89 G C = = MP 255 254 6 259 6 2 2 25 45 -15.987 -15.927 -0.194 -4.476 -6.536 -3.839 -12.132 -3.246 -12.358 1.549 -14.442 -14.352 -9.823 -12.397 -11.796 3.686 -12.417 -5.337 -9.784 -13.327 -11.702 -3.774 ML 256 254 6 259 6 1 1 24 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 24 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 21 41 -12.513 -11.211 -7.008 -7.690 -7.708 -0.026 IL 259 259 5 259 6 1 1 25 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 25 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 74 88 G C = = MP 261 260 6 265 4 2 2 24 43 -9.717 -15.223 -0.180 -3.104 -5.808 -1.332 -9.759 1.852 -2.390 -10.351 -2.124 -10.433 -10.155 3.517 -10.413 -4.501 -6.232 -4.639 -7.976 -8.717 ML 262 260 6 265 4 1 1 23 43 -1.001 -9.678 -1.869 -2.150 1.540 -0.226 -4.918 -2.296 MR 263 260 6 265 4 1 1 22 42 -8.967 -7.996 -1.468 -0.661 1.545 -0.314 -3.110 -2.622 D 264 260 6 265 4 0 0 21 41 -11.704 -11.385 -0.911 -1.097 IL 265 265 5 265 4 1 1 23 42 -6.737 -7.420 -0.024 -9.905 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 1 22 41 -5.671 -0.029 -14.542 -2.083 -0.940 -5.288 1.686 D 268 266 6 269 3 0 0 20 40 -14.840 -0.301 -2.411 IL 269 269 3 269 3 1 1 22 41 -5.034 -0.052 -7.734 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 21 40 -16.085 -0.097 -3.942 -1.838 -1.047 -2.616 1.620 D 271 269 3 272 3 0 0 20 39 -12.435 -0.013 -6.827 IL 272 272 3 272 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - a - + - ML 273 272 3 275 3 1 1 20 39 -16.033 -0.001 -10.508 0.560 0.353 -4.513 0.269 D 274 272 3 275 3 0 0 18 38 -13.570 -1.090 -0.915 IL 275 275 3 275 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 19 38 -5.051 -0.062 -6.399 1.617 -1.985 -2.600 -0.957 D 277 275 3 278 3 0 0 16 36 -12.686 -1.161 -0.856 IL 278 278 3 278 3 1 1 21 40 -1.433 -0.672 -9.132 0.000 0.000 0.000 0.000 [ MATL 72 ] 83 - A - + - ML 279 278 3 281 3 1 1 17 37 -16.083 -0.037 -5.294 1.793 -1.832 -4.636 -2.229 D 280 278 3 281 3 0 0 11 31 -12.514 -8.027 -0.006 IL 281 281 3 281 3 1 1 19 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 84 - c - + - ML 282 281 3 284 3 1 1 16 36 -4.989 -0.262 -2.893 0.231 0.519 0.032 -1.430 D 283 281 3 284 3 0 0 9 29 -13.368 -6.171 -0.020 IL 284 284 3 284 3 1 1 19 38 -1.349 -0.723 -9.213 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.942 0.757 -5.407 1.109 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Arg-2nd-align LENG 90 MAXL 161 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:48 2015 COM [1] cmbuild --hand --enone Arg-final-vert.cm ../Arg-2nd-align.sto NSEQ 1085 EFFN 15.632801 CKSUM 358479052 STATS LOCAL MSV -8.9383 0.71857 STATS LOCAL VITERBI -9.4717 0.71857 STATS LOCAL FORWARD -4.2012 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.14977 1.59683 1.67617 1.22533 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 0.00000 * 1 0.88474 1.94266 1.77423 1.29375 1 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 2 1.66060 2.77055 0.37926 2.76490 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 3 1.26301 2.99244 0.51519 2.66430 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 4 1.68439 1.53726 1.52518 0.96262 4 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 5 0.83942 2.04021 1.32443 1.75978 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 6 1.11367 2.08820 0.95870 1.80579 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 7 2.70713 1.52396 2.17812 0.50721 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 8 4.98307 4.66649 5.55925 0.02031 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 9 0.03599 4.59161 4.11977 4.71409 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 10 2.07358 3.04470 0.26700 2.79715 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 11 5.76704 4.02109 5.78140 0.02444 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 12 2.78993 0.73913 2.71143 0.92987 12 c = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 13 3.91765 1.51873 4.26049 0.29168 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 14 0.03972 4.74135 4.33767 4.06604 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 15 0.11624 3.26552 3.29495 3.36695 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.60385 5.11990 0.80448 1.46634 0.26236 1.09861 0.40547 16 1.71652 0.95430 2.74148 0.99221 16 c + - _ 1.38629 1.38629 1.38629 1.38629 0.52815 4.53768 0.91727 1.46634 0.26236 4.34179 0.01310 17 2.23551 0.96393 2.81211 0.79497 17 u + - _ 1.38629 1.38629 1.38629 1.38629 1.04943 2.88609 0.52076 0.54094 0.87276 0.16184 1.90096 18 0.40337 3.54610 1.29590 3.52512 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01688 4.78307 4.78307 1.46634 0.26236 1.05185 0.42969 19 0.84645 1.34478 2.35633 1.53386 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.95138 4.91435 0.50013 1.46634 0.26236 3.52893 0.02978 20 1.68872 1.04182 2.45920 0.97570 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12323 2.32660 4.00028 0.71615 0.67066 0.01744 4.05789 21 0.09556 3.40117 3.87992 3.29284 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 22 0.12000 4.41121 2.57868 3.68616 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 23 0.92512 2.89144 0.73499 2.68075 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 24 0.02910 5.86037 3.86202 5.33728 27 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 25 3.09543 0.43853 2.90186 1.36711 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 26 0.51068 1.68863 2.69700 1.91234 29 A + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 27 1.23655 1.76308 1.55057 1.12094 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 28 1.83235 1.04255 2.24172 0.96461 31 u = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 29 6.34827 5.77066 6.66327 0.00616 32 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 30 1.79086 3.58446 0.24909 3.65270 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 31 0.15539 4.63053 2.21657 3.68154 34 A = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 32 4.06373 2.94653 4.57281 0.08342 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 33 4.98307 4.66649 5.55925 0.02031 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 34 4.46891 3.89104 4.99826 0.03940 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 35 5.02304 0.02820 5.33940 4.10907 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 36 4.29439 5.80100 0.02236 5.21343 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 37 0.62006 4.46732 0.82849 4.27600 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 38 3.69234 0.04850 4.92986 4.18647 41 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 39 3.92783 2.12194 4.40979 0.16445 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 40 3.90020 0.27739 3.43378 1.66212 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 41 0.00847 6.71083 5.41061 5.89845 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 42 1.07277 2.41699 0.95692 1.68915 45 g = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 43 1.16148 1.64979 1.70876 1.15901 46 u = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 44 0.24143 2.40990 3.42370 2.38513 47 A + - , 1.38629 1.38629 1.38629 1.38629 0.01299 5.11990 4.97223 1.46634 0.26236 1.09861 0.40547 45 0.54743 3.68152 1.00448 3.50176 48 A + - , 1.38629 1.38629 1.38629 1.38629 2.12321 5.11895 0.13425 1.46634 0.26236 1.15030 0.38059 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 47 1.80280 1.30600 1.07737 1.49714 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 48 1.80031 1.30676 1.07829 1.49664 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 49 1.79918 1.30711 1.07872 1.49641 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 50 1.79870 1.30725 1.07889 1.49632 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 51 1.79856 1.30730 1.07895 1.49629 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 52 1.79857 1.30729 1.07894 1.49629 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 53 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 54 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 55 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 57 1.72986 1.22038 1.16225 1.53809 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 58 1.72981 1.22040 1.16227 1.53808 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 59 1.72985 1.22038 1.16225 1.53809 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 60 1.73006 1.22029 1.16218 1.53815 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 61 1.73056 1.22008 1.16199 1.53830 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 62 1.73158 1.21964 1.16162 1.53860 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.99936 0.00677 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01358 4.30621 64 0.17852 2.81390 3.14604 2.80505 67 A + - , 1.38629 1.38629 1.38629 1.38629 0.02975 3.75775 5.11990 0.45151 1.01243 1.09861 0.40547 65 2.45069 1.55656 3.58244 0.39290 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 66 3.04387 1.05075 2.81793 0.61075 70 U = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 67 1.02954 2.31558 0.90031 1.98286 71 g = - < 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 68 2.60703 1.69811 2.35839 0.43287 72 U = - < 1.38629 1.38629 1.38629 1.38629 0.01647 5.11990 4.57029 1.46634 0.26236 1.09861 0.40547 69 1.61094 3.50785 0.31255 3.25028 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.08605 5.11551 2.57111 1.46634 0.26236 1.31710 0.31185 70 1.42576 2.70244 0.46465 2.74449 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.15060 3.54633 2.19843 0.40017 1.10928 0.73790 0.65032 71 2.54207 2.03248 3.56419 0.27185 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03093 3.74793 4.97715 0.50836 0.92000 0.27946 1.41139 72 2.34519 2.05029 2.86993 0.33021 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07110 5.09473 2.77253 1.46634 0.26236 0.32769 1.27507 73 1.07903 1.22455 2.77695 1.19087 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01330 5.06336 4.97855 1.46634 0.26236 0.82807 0.57429 74 0.35567 2.45317 2.71195 1.91822 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04987 3.43386 4.11119 0.65705 0.73059 0.90327 0.51960 75 0.20323 2.52874 3.45020 2.62538 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03494 5.09329 3.56857 1.46634 0.26236 2.00061 0.14532 76 1.21593 1.20200 1.45612 1.77293 84 c + - _ 1.38629 1.38629 1.38629 1.38629 0.16950 3.39782 2.09991 0.68060 0.70585 2.30642 0.10494 77 2.58115 0.93614 3.41756 0.69438 87 u + - _ 1.38629 1.38629 1.38629 1.38629 0.11326 4.94814 2.30275 1.46634 0.26236 0.24322 1.53293 78 2.92349 0.46610 2.69285 1.38181 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.01343 5.00984 5.00984 1.46634 0.26236 0.14353 2.01214 79 3.59201 0.33659 3.31085 1.50611 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.01208 5.11551 5.11551 1.46634 0.26236 0.76749 0.62395 80 0.49127 2.53395 1.52988 2.38328 90 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 81 2.15521 1.02978 2.19464 0.87794 91 u = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 82 0.67078 2.91842 0.98129 2.81602 92 A = - > 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 83 0.57253 2.27728 1.39303 2.46488 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 84 2.09446 0.95235 2.02168 1.02556 94 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 85 1.95879 1.29413 1.89039 0.83512 95 u = - ) 1.38629 1.38629 1.38629 1.38629 0.04352 3.30732 5.11990 0.29956 1.35147 1.09861 0.40547 86 1.06459 1.60445 1.41410 1.55596 97 a = - ) 1.38629 1.38629 1.38629 1.38629 0.03825 3.45620 5.11990 0.34355 1.23530 1.09861 0.40547 87 2.86798 0.58070 2.79812 1.13086 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 88 2.92549 0.42089 2.62922 1.52433 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 89 1.29408 1.96096 1.79550 0.86969 101 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01203 5.11990 5.11990 1.46634 0.26236 1.09861 0.40547 90 0.88678 2.28806 2.39079 0.92888 102 a + - : 1.38629 1.38629 1.38629 1.38629 0.00603 5.11390 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Glu.cm0000644000543100007160000017246612573631650021146 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Glu-2nd-align STATES 289 NODES 76 CLEN 90 W 131 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:52 2015 COM [1] cmbuild --hand --enone Glu-final-vert.cm ../Glu-2nd-align.sto COM [2] cmcalibrate --seed 208 Glu-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1088 EFFN 1088.000000 CKSUM 3356703110 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.6012 0.71862 ECMLC 0.62646 -6.57452 2.92551 1600000 461139 0.002602 ECMGC 0.28137 -45.63695 -29.04406 1600000 42625 0.009384 ECMLI 0.61426 -6.29645 3.30967 1600000 438348 0.002738 ECMGI 0.29432 -41.96728 -26.25918 1600000 40730 0.009821 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 131 212 -15.016 -16.261 -0.000 -12.715 IL 1 1 2 1 4 18 38 132 214 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 39 133 214 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 114 - U - + MR 3 2 3 5 5 25 47 132 213 -15.065 -0.000 -14.880 -15.092 -15.984 0.704 -2.956 -2.265 1.024 D 4 2 3 5 5 15 35 129 211 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 38 131 213 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 113 G U = = MP 6 5 3 10 6 25 46 131 212 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -12.041 -10.702 -12.236 -0.080 -14.357 -15.517 -0.692 -3.744 -11.797 1.080 -12.466 3.568 -9.752 -13.539 -11.650 -1.391 ML 7 5 3 10 6 17 37 128 209 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 36 128 209 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 33 124 205 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 38 130 211 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 38 129 211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 112 U A = = MP 12 11 6 16 6 25 45 129 210 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.048 -13.320 -12.368 -0.393 -10.721 -12.514 -1.743 -11.635 -12.470 -9.532 -12.591 -11.707 3.886 -12.886 -3.172 -4.656 ML 13 11 6 16 6 17 36 126 207 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 36 126 207 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 32 122 203 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 37 128 209 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 38 127 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 111 U A = = MP 18 17 6 22 6 23 43 127 208 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.050 -13.329 -12.368 -3.118 -10.719 -12.513 -0.668 -11.634 -4.259 -9.539 -12.592 -11.728 3.913 -12.885 -2.882 -11.273 ML 19 17 6 22 6 16 36 124 206 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 36 124 205 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 32 120 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 37 126 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 37 126 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 110 C G = = MP 24 23 6 28 6 21 41 125 206 -15.999 -6.459 -0.017 -14.714 -14.994 -15.389 -13.024 -13.291 -12.353 -1.717 -5.336 -12.505 3.266 -11.622 -12.454 -9.476 -12.579 -11.660 2.285 -12.865 0.150 -3.970 ML 25 23 6 28 6 16 36 122 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 35 122 203 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 32 118 200 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 124 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 39 124 205 -5.582 -0.047 -9.093 -7.261 -8.367 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 108 u a = = MP 30 29 6 34 6 19 39 123 204 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.024 -13.291 -12.353 -0.692 -6.031 -12.505 2.037 -11.622 -12.453 -9.475 -12.579 -11.660 2.780 -12.865 2.119 -4.359 ML 31 29 6 34 6 16 35 121 202 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 35 120 201 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 117 198 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 36 122 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 36 122 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 107 U A = = MP 36 35 6 40 6 17 37 121 202 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.041 -13.317 -12.362 -0.395 -7.198 -12.509 0.933 -11.629 -12.465 -9.516 -12.587 -11.707 3.252 -12.877 1.807 -1.768 ML 37 35 6 40 6 15 34 119 200 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 119 200 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 116 197 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 35 120 201 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 35 120 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 106 g c = = MP 42 41 6 46 4 15 35 119 200 -15.222 -15.429 -0.000 -13.843 -10.072 -8.710 -9.898 2.550 -11.041 -10.515 -4.424 -3.525 -6.200 2.856 -2.123 1.224 -2.623 -9.768 -8.117 -5.959 ML 43 41 6 46 4 14 33 118 199 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 117 198 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 31 116 197 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 34 118 200 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 118 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 117 198 -16.131 -0.000 -14.785 -2.691 -10.969 -12.376 1.943 D 49 47 6 50 3 12 31 115 196 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 33 117 198 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 116 197 -6.550 -0.015 1.925 -11.629 -2.300 -11.228 D 52 50 3 53 2 11 31 114 196 -8.445 -0.004 IL 53 53 3 53 2 12 32 116 197 -5.568 -0.031 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 114 196 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 90 172 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 90 172 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 33 55 -0.000 -14.126 -13.533 -14.173 [ MATP 15 ] 11 31 G C = = MP 58 57 1 62 6 2 3 33 55 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.979 -10.554 -16.557 -8.050 -15.586 -3.149 -9.858 -15.898 -11.926 3.967 -12.113 -2.040 -10.229 -12.175 -12.319 -15.801 ML 59 57 1 62 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 31 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 29 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 U A = = MP 64 63 6 68 6 2 3 31 53 -15.999 -15.938 -0.002 -14.714 -9.557 -15.389 -13.048 -13.317 -12.368 -9.555 -10.721 -12.515 -6.433 -11.635 -12.470 -9.530 -12.591 -11.700 3.903 -12.886 0.032 -11.272 ML 65 63 6 68 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 30 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 29 U A = = MP 70 69 6 74 6 2 3 29 51 -15.997 -15.936 -0.000 -14.712 -14.992 -15.387 -4.229 -12.767 -12.353 -4.396 -10.844 -12.632 -6.554 -0.693 -3.970 -9.133 -12.578 -10.633 3.907 -12.932 -3.966 -2.896 ML 71 69 6 74 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 28 50 -8.462 -7.191 -0.402 -7.169 -2.303 -5.383 1.612 -1.958 -1.632 -1.463 D 73 69 6 74 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 28 G C = = MP 76 75 6 80 4 2 2 27 49 -15.222 -15.429 -0.012 -6.890 -11.966 -3.727 -4.366 0.318 -14.015 -13.930 -9.313 -4.204 -2.900 3.841 -12.307 -3.987 -9.361 -4.375 -11.225 -10.780 ML 77 75 6 80 4 1 1 27 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 48 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 28 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 25 47 -16.119 -0.004 -8.667 1.991 -5.379 -11.291 -11.342 D 83 81 6 84 3 0 0 22 45 -10.711 -6.224 -0.020 IL 84 84 3 84 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 24 46 -16.115 -0.259 -2.605 1.680 -10.156 -0.862 -2.027 D 86 84 3 87 3 0 0 22 45 -11.062 -6.575 -0.016 IL 87 87 3 87 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 23 46 -15.856 -0.455 -1.887 0.146 -2.764 -5.014 1.441 D 89 87 3 90 3 0 0 22 44 -15.025 -10.538 -0.001 IL 90 90 3 90 3 1 1 25 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 22 45 -3.266 -7.261 -0.169 0.647 -3.643 -9.188 1.234 D 92 90 3 93 3 0 0 22 44 -16.218 -0.899 -1.108 IL 93 93 3 93 3 1 1 24 46 -6.863 -0.082 -4.422 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - + - ML 94 93 3 96 3 1 2 23 45 -14.277 -0.000 -12.931 -1.443 -3.848 1.403 -0.124 D 95 93 3 96 3 0 0 18 40 -17.083 -5.227 -0.039 IL 96 96 3 96 3 1 1 24 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - g - + - ML 97 96 3 99 3 1 1 22 44 -14.374 -1.300 -0.752 -0.827 -2.648 0.736 0.688 D 98 96 3 99 3 0 0 17 39 -17.045 -8.561 -0.004 IL 99 99 3 99 3 1 1 24 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 22 44 -0.207 -2.908 -11.749 0.621 -2.636 -6.354 1.195 D 101 99 3 102 3 0 0 16 39 -5.735 -0.028 -11.755 IL 102 102 3 102 3 1 1 21 43 -1.187 -0.835 -11.336 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.910 -10.383 -3.379 -2.793 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 2 77 158 -16.131 -0.000 -14.785 IL 108 108 2 108 3 1 1 78 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - + - ML 109 108 2 111 5 1 3 77 158 -15.065 -0.000 -14.880 -15.092 -15.984 -0.290 -11.953 1.670 -11.264 D 110 108 2 111 5 0 0 74 156 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 77 158 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 54 a u = = MP 112 111 3 116 6 2 4 76 157 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -9.968 -8.607 -4.594 2.329 -10.916 -10.382 -2.838 -6.289 -5.570 2.262 -10.471 2.171 0.045 -9.641 -1.401 -4.494 ML 113 111 3 116 6 1 1 73 155 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 73 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 69 150 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 75 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 75 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 53 U A = = MP 118 117 6 122 6 2 4 74 155 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -5.847 -9.998 -5.839 -3.979 -9.163 -11.141 1.195 -6.332 -6.548 -2.078 -5.517 -4.360 3.581 -5.546 0.188 -2.762 ML 119 117 6 122 6 1 1 71 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 71 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 67 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 73 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 73 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 52 G C = = MP 124 123 6 128 6 2 4 72 153 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.644 -4.354 -15.094 1.252 -15.417 -11.830 -9.852 -14.869 -11.913 3.726 -12.141 -2.337 -10.175 -2.907 -12.240 -13.878 ML 125 123 6 128 6 1 1 70 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 69 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 66 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 71 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 71 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 51 g c = = MP 130 129 6 134 6 2 3 70 151 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -11.972 -4.863 -12.140 1.543 -14.163 -14.843 -9.550 -12.227 -3.729 2.884 -12.396 2.450 -9.536 -5.170 -11.415 -3.375 ML 131 129 6 134 6 1 1 68 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 67 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 64 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 69 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 69 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 50 U G = = MP 136 135 6 140 4 2 2 68 149 -15.222 -15.429 -0.079 -4.238 -13.047 -13.326 -12.366 -9.560 -4.953 -12.511 1.346 -11.632 -12.469 -9.531 -3.497 -5.432 2.121 -3.886 3.128 -2.736 ML 137 135 6 140 4 1 1 67 148 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 65 146 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 63 145 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 68 149 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 67 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - U - + - ML 142 141 6 144 3 1 1 66 147 -16.053 -0.000 -14.707 -8.996 -2.460 -5.436 1.923 D 143 141 6 144 3 0 0 61 142 -13.319 -8.832 -0.003 IL 144 144 3 144 3 1 1 66 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - U - + - ML 145 144 3 147 3 1 1 65 146 -16.053 -0.000 -14.707 -11.955 -1.429 -12.917 1.859 D 146 144 3 147 3 0 0 61 142 -13.319 -8.832 -0.003 IL 147 147 3 147 3 1 1 65 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - U - * - ML 148 147 3 150 3 1 1 64 145 -16.053 -0.000 -14.707 -13.336 -11.957 -14.912 2.000 D 149 147 3 150 3 0 0 61 142 -13.319 -8.832 -0.003 IL 150 150 3 150 3 1 1 64 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - U - * - ML 151 150 3 153 3 1 1 63 144 -16.053 -0.000 -14.707 -13.336 -11.957 -14.912 2.000 D 152 150 3 153 3 0 0 61 142 -13.319 -8.832 -0.003 IL 153 153 3 153 3 1 1 63 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - C - * - ML 154 153 3 156 3 1 1 62 143 -16.053 -0.000 -14.707 -12.641 2.000 -13.517 -11.029 D 155 153 3 156 3 0 0 61 142 -13.319 -0.007 -7.711 IL 156 156 3 156 3 1 1 62 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - + - ML 157 156 3 159 3 1 1 61 142 -4.240 -0.078 -14.785 1.651 -10.802 -0.259 -5.488 D 158 156 3 159 3 0 0 54 135 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 73 154 -0.326 -2.307 -11.613 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - a - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.788 -3.544 0.074 0.182 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 74 141 -16.131 -0.000 -14.785 IL 165 165 2 165 3 1 5 75 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - U - + - ML 166 165 2 168 3 1 4 74 141 -16.131 -0.000 -14.785 0.739 -4.046 -2.164 1.034 D 167 165 2 168 3 0 2 72 140 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 74 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - G - + - ML 169 168 3 171 2 1 3 73 140 -16.786 -0.000 0.294 -4.813 1.442 -5.522 D 170 168 3 171 2 0 2 72 139 -8.445 -0.004 IL 171 171 3 171 2 1 3 73 141 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 72 139 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.822 -14.126 -13.533 -0.007 [ MATP 48 ] 57 74 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 58 73 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 59 72 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 60 71 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 61 70 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 62 69 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.013 -18.711 -14.508 -15.190 -15.208 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 63 68 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.435 -15.116 -13.132 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 64 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.548 -13.061 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 65 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.548 -13.061 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 66 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.548 -13.061 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 67 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 70 138 -16.131 -0.004 -8.367 IL 230 230 2 230 3 1 1 72 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 75 - G - + - ML 231 230 2 233 3 1 4 70 138 -4.454 -0.067 -14.781 -1.654 -10.228 1.759 -1.749 D 232 230 2 233 3 0 0 69 137 -9.337 -0.116 -3.729 IL 233 233 3 233 3 1 1 70 138 -6.412 -0.020 -9.112 0.000 0.000 0.000 0.000 [ MATL 62 ] 77 - U - + - ML 234 233 3 236 5 1 4 69 137 -15.065 -0.000 -14.880 -15.092 -15.984 -4.273 -1.129 -4.071 1.779 D 235 233 3 236 5 0 0 67 135 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 69 137 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 78 105 C G = = MP 237 236 3 241 6 2 4 68 136 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -13.037 -13.311 -12.361 -9.541 -10.714 -12.509 3.623 -11.628 -12.463 -0.692 -12.585 -11.697 1.045 -12.875 -0.080 -4.384 ML 238 236 3 241 6 1 1 66 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 65 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 61 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 67 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 67 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 79 104 u a = = MP 243 242 6 247 6 2 4 66 134 -15.999 -15.938 -0.000 -14.714 -14.994 -15.389 -10.294 -9.996 -10.295 1.434 -5.559 -11.139 2.076 -6.408 -10.153 -0.415 -10.667 -0.754 2.524 -10.477 0.774 -2.058 ML 244 242 6 247 6 1 1 64 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 63 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 60 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 65 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 65 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 80 103 U A = = MP 249 248 6 253 6 2 2 64 132 -6.252 -15.938 -0.045 -14.714 -7.946 -6.206 -3.135 -10.013 -6.384 -0.863 -5.503 -11.151 1.474 -9.828 -10.169 -0.703 -10.681 -7.581 3.110 -10.493 0.628 0.783 ML 250 248 6 253 6 1 1 62 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 61 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 58 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 63 131 -6.603 -6.866 -0.037 -8.521 -9.297 -8.958 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 63 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 82 102 G C = = MP 255 254 6 259 6 2 2 62 130 -15.973 -15.912 -0.023 -14.689 -14.969 -6.013 -13.477 -10.548 -14.675 0.425 -15.320 -11.874 -9.829 -14.517 -11.882 3.840 -12.131 -1.573 -10.129 -12.277 -12.183 -13.402 ML 256 254 6 259 6 1 1 61 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 58 126 -9.692 -8.421 -4.330 -8.399 -3.533 -0.223 -2.854 -2.628 -3.631 1.856 D 258 254 6 259 6 0 0 57 124 -13.866 -12.564 -8.361 -9.043 -9.061 -0.010 IL 259 259 5 259 6 1 1 61 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 61 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 83 101 G C = = MP 261 260 6 265 4 2 2 60 128 -15.173 -15.380 -0.002 -9.294 -12.486 -10.602 -12.849 -3.166 -14.527 -12.854 -9.688 -3.565 -11.800 3.884 -12.270 -5.128 -4.008 -12.797 -0.081 -11.467 ML 262 260 6 265 4 1 1 59 127 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 59 126 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 57 124 -10.534 -10.215 -4.246 -0.080 IL 265 265 5 265 4 1 1 60 128 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 60 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 84 - U - + - ML 267 266 6 269 3 1 1 58 126 -4.927 -0.048 -14.737 -1.147 -4.334 -1.774 1.681 D 268 266 6 269 3 0 0 57 124 -12.633 -0.649 -1.466 IL 269 269 3 269 3 1 1 59 126 -1.682 -0.543 -9.130 0.000 0.000 0.000 0.000 [ MATL 69 ] 87 - U - + - ML 270 269 3 272 3 1 1 57 125 -16.114 -0.010 -7.166 -3.534 -4.952 -0.484 1.663 D 271 269 3 272 3 0 0 55 123 -11.181 -1.115 -0.895 IL 272 272 3 272 3 1 1 58 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 88 - A - + - ML 273 272 3 275 3 1 1 56 124 -16.112 -0.000 -14.766 1.557 -2.272 -1.517 -0.994 D 274 272 3 275 3 0 0 55 123 -11.337 -0.028 -5.728 IL 275 275 3 275 3 1 1 56 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 89 - A - + - ML 276 275 3 278 3 1 1 55 123 -6.409 -0.026 -7.388 1.133 -2.165 0.487 -2.461 D 277 275 3 278 3 0 0 50 118 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 55 123 -4.586 -0.071 -7.286 0.000 0.000 0.000 0.000 [ MATL 72 ] 91 - A - + - ML 279 278 3 281 3 1 1 54 122 -16.122 -0.002 -9.319 1.815 -2.240 -3.552 -2.447 D 280 278 3 281 3 0 0 39 107 -10.242 -5.755 -0.028 IL 281 281 3 281 3 1 1 54 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 92 - g - + - ML 282 281 3 284 3 1 1 53 121 -3.389 -0.189 -5.201 0.128 -3.349 0.848 0.013 D 283 281 3 284 3 0 0 34 101 -10.553 -6.066 -0.023 IL 284 284 3 284 3 1 1 61 128 -0.393 -2.132 -6.602 0.000 0.000 0.000 0.000 [ MATL 74 ] 100 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.391 -2.315 -1.080 1.558 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Glu-2nd-align LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:52 2015 COM [1] cmbuild --hand --enone Glu-final-vert.cm ../Glu-2nd-align.sto NSEQ 1088 EFFN 9.408936 CKSUM 3356703110 STATS LOCAL MSV -8.7123 0.71862 STATS LOCAL VITERBI -9.3910 0.71862 STATS LOCAL FORWARD -3.4345 0.71862 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34971 1.69367 1.40529 1.16621 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 0.00000 * 1 2.08810 2.63248 0.29453 2.82517 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 2 2.86463 2.31865 3.59410 0.20199 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 3 3.88702 2.35302 3.86945 0.14671 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 4 2.70962 0.68474 2.62974 1.02969 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 5 2.50019 1.21620 2.56906 0.60703 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 6 2.38215 1.52308 2.48436 0.50050 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 7 1.25860 2.75484 0.54952 2.58893 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 8 2.86218 3.32967 3.92561 0.11955 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 9 0.09381 4.16374 2.87688 4.03481 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02682 4.04448 4.71721 0.82523 0.57650 1.09861 0.40547 10 3.71927 4.35169 0.04748 4.68521 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 11 4.77821 3.15160 4.69198 0.06226 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01911 4.71721 4.60625 1.46634 0.26236 1.09861 0.40547 12 5.36926 4.73869 5.35259 0.01831 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71616 4.71616 1.46634 0.26236 1.02602 0.44384 13 1.86202 2.81958 0.33413 2.67297 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.02491 4.71721 4.15624 1.46634 0.26236 1.09861 0.40547 14 0.03795 4.38828 4.33293 4.44894 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02015 4.71046 4.51457 1.46634 0.26236 1.32239 0.30993 15 0.31953 3.17944 1.96182 2.39358 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.16254 4.70851 1.95903 1.46634 0.26236 1.37845 0.29031 16 1.38576 2.31334 2.70490 0.53775 17 U + - _ 1.38629 1.38629 1.38629 1.38629 0.26110 4.56698 1.51683 1.46634 0.26236 2.92334 0.05525 17 1.11278 2.24672 2.52253 0.72288 18 u + - _ 1.38629 1.38629 1.38629 1.38629 1.31372 2.47900 0.43486 0.28843 1.38406 0.65273 0.73527 18 1.54576 2.15776 0.83963 1.42963 20 g + - _ 1.38629 1.38629 1.38629 1.38629 0.04931 3.85032 3.61772 1.46634 0.26236 3.21358 0.04104 19 1.42023 1.95476 1.26416 1.09582 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.41890 3.88104 1.13445 1.46634 0.26236 3.84531 0.02161 20 1.16930 1.78392 2.00443 0.95010 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.45921 1.08156 3.53527 0.61296 0.78033 0.02514 3.69575 21 0.12369 3.65749 3.15675 3.03690 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 22 2.89124 0.38394 2.63281 1.65315 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 23 0.02263 5.50269 4.57933 4.82388 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 24 0.10333 4.81310 2.54269 4.47506 30 A = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 25 4.71231 0.06399 4.54869 3.16022 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 26 1.64979 3.87047 0.27670 3.54823 32 G + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 27 1.35543 2.61793 0.59875 2.12267 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 28 2.49032 1.42584 2.19286 0.57055 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 29 1.84910 3.26489 0.27966 3.02872 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 30 1.60523 2.89528 0.39225 2.68324 36 G = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 31 2.60197 1.42767 2.35968 0.52500 37 U = - < 1.38629 1.38629 1.38629 1.38629 0.06235 4.71721 2.96608 1.46634 0.26236 1.09861 0.40547 32 3.26425 2.67759 3.63740 0.14303 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 33 3.42475 2.30697 3.94120 0.16434 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 34 4.24210 3.98738 4.79615 0.04206 40 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 35 4.24210 3.98738 4.79615 0.04206 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 2.04913 0.13794 36 4.63386 0.03529 5.03091 3.99430 42 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01885 4.67371 4.67371 1.46634 0.26236 0.29800 1.35598 37 0.30234 3.69412 1.59929 3.38129 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06235 2.96608 4.71721 1.59440 0.22694 1.09861 0.40547 38 0.96524 2.33905 1.44902 1.24518 49 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 39 1.32818 2.54802 0.58170 2.32425 50 G = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 40 2.96523 0.73439 2.70243 0.91227 51 c = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 41 3.37918 0.31217 3.07919 1.67092 52 C = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 42 0.70668 2.37562 1.18746 2.21850 53 a = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 43 2.40702 0.93515 2.31513 0.87075 54 u = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 44 1.00041 2.39832 2.23262 0.83436 55 u + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 45 1.22364 3.27952 0.47784 3.03507 56 G + - , 1.38629 1.38629 1.38629 1.38629 1.72148 4.71721 0.20794 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 47 1.80290 1.30596 1.07733 1.49716 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 48 1.80048 1.30671 1.07823 1.49667 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 49 1.79938 1.30704 1.07864 1.49645 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 50 1.79894 1.30718 1.07881 1.49637 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 51 1.79882 1.30722 1.07885 1.49634 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 52 1.79885 1.30721 1.07884 1.49635 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 53 1.13112 1.65303 1.51838 1.32128 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 54 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 55 1.13112 1.65303 1.51838 1.32128 66 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 56 1.13112 1.65303 1.51838 1.32128 67 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 57 1.73012 1.22026 1.16215 1.53817 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 58 1.73005 1.22029 1.16218 1.53815 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 59 1.73007 1.22029 1.16217 1.53816 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 60 1.73025 1.22021 1.16211 1.53821 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 61 1.73070 1.22002 1.16194 1.53834 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 62 1.73166 1.21961 1.16159 1.53863 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53105 0.01083 63 1.73350 1.21882 1.16092 1.53917 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02475 3.71148 64 2.22134 3.46601 0.25395 2.47028 75 G + - , 1.38629 1.38629 1.38629 1.38629 0.05614 3.08713 4.71480 0.35505 1.20776 0.94600 0.49150 65 2.92611 2.13943 3.32051 0.23251 77 U + - , 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 66 3.05159 0.46958 2.44448 1.42428 78 C = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 67 1.76771 1.24366 1.88494 0.94389 79 u = - < 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 68 2.12097 1.40603 2.00730 0.69191 80 U = - < 1.38629 1.38629 1.38629 1.38629 0.04361 3.93542 3.76647 0.75151 0.63800 1.09861 0.40547 69 2.41208 4.18316 0.13044 4.05052 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.03108 4.70292 3.83819 1.46634 0.26236 1.52336 0.24587 70 2.25807 2.83238 0.29835 2.35880 83 G = - < 1.38629 1.38629 1.38629 1.38629 0.01978 4.69037 4.56593 1.46634 0.26236 1.64684 0.21401 71 1.99343 2.69974 2.46132 0.34076 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04566 3.33948 4.69052 0.66728 0.71970 0.72131 0.66575 72 2.58436 2.83675 1.96287 0.32091 87 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02390 4.70773 4.22757 1.46634 0.26236 0.99962 0.45890 73 0.47043 2.35297 2.17950 1.78926 88 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01824 4.70661 4.70661 1.46634 0.26236 0.65113 0.73700 74 0.74039 2.35162 1.18982 2.09085 89 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03264 3.99562 4.28928 0.79140 0.60369 1.09861 0.40547 75 0.22893 2.59853 2.97606 2.53529 91 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01938 4.71243 4.58416 1.46634 0.26236 1.26246 0.33262 76 1.27308 2.39160 0.99745 1.34811 92 g + - _ 1.38629 1.38629 1.38629 1.38629 0.12386 2.45709 3.47981 1.43217 0.27285 1.30045 0.31802 77 1.91569 2.30373 2.09988 0.46140 100 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04466 4.68913 3.36727 1.46634 0.26236 0.45057 1.01408 78 2.99233 0.33956 2.32447 1.96677 101 C = - > 1.38629 1.38629 1.38629 1.38629 0.01854 4.69037 4.69037 1.46634 0.26236 0.77802 0.61492 79 4.19725 0.16296 4.00249 2.14503 102 C = - > 1.38629 1.38629 1.38629 1.38629 0.01824 4.70621 4.70621 1.46634 0.26236 0.64157 0.74753 80 0.96691 2.15975 1.14253 1.68535 103 a = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 81 1.20238 2.14613 1.00377 1.53205 104 g = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 82 1.74053 2.56791 0.37805 2.76973 105 G = - > 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 83 2.83706 0.75202 2.51895 0.94304 106 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 84 0.80950 2.66296 1.00603 2.12437 107 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 85 1.02821 2.74806 0.73688 2.30562 108 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02743 4.01091 4.71721 0.80184 0.59512 1.09861 0.40547 86 1.24955 2.81014 0.56362 2.47662 110 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 87 0.16665 4.13887 2.18371 3.69135 111 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 88 0.23057 3.77649 2.13764 2.73207 112 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 89 3.35538 1.56139 2.56608 0.38798 113 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01804 4.71721 4.71721 1.46634 0.26236 1.09861 0.40547 90 1.02048 2.28280 2.24245 0.84076 114 u + - : 1.38629 1.38629 1.38629 1.38629 0.00906 4.70823 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/Thaum-BHB-noncan.cm0000644000543100007160000006716413064431524020145 0ustar pchanlowelabINFERNAL1/a [1.1.2 | July 2016] NAME Thaum-NC-Intron DESC This file includes non-canonical tRNA introns found in Thaumarchaeota STATES 124 NODES 28 CLEN 40 W 191 ALPH RNA RF yes CONS yes MAP yes DATE Wed Mar 22 01:15:20 2017 COM [1] cmbuild -F --hand --enone Thaum-BHB-noncan-nc.cm Thaum-BHB-noncan.sto COM [2] cmcalibrate --hfile cmcalibrate_files/Thaum-BHB-noncan.hfile --sfile cmcalibrate_files/Thaum-BHB-noncan.sfile --qqfile cmcalibrate_files/Thaum-BHB-noncan.qqfile --ffile cmcalibrate_files/Thaum-BHB-noncan.ffile --seed 208 Thaum-BHB-noncan.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 78 EFFN 78.000000 CKSUM 3900835696 NULL 0.000 0.000 0.000 0.000 EFP7GF -0.5902 0.88729 ECMLC 0.65669 -1.74382 5.89492 1600000 181021 0.006629 ECMGC 0.75574 0.72723 7.74879 1600000 80654 0.004959 ECMLI 0.69346 0.41301 7.32815 1600000 145140 0.008268 ECMGI 0.76029 1.83587 8.71379 1600000 74659 0.005358 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 191 371 -12.316 -12.255 -0.002 -11.032 -11.311 -11.706 IL 1 1 2 1 6 1 5 192 372 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 5 192 372 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 75 c u = = MP 3 2 3 7 6 2 12 191 371 -12.316 -12.255 -0.002 -11.032 -11.311 -11.706 -2.409 -0.738 0.091 -0.224 -0.641 0.751 0.816 1.393 -1.502 0.490 -0.281 -1.115 0.130 -0.466 -1.476 0.445 ML 4 2 3 7 6 1 4 189 369 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 4 189 369 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 184 364 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 5 191 370 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 5 190 370 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 74 c g = = MP 9 8 6 13 6 2 11 189 369 -12.316 -12.255 -0.002 -11.032 -11.311 -11.706 0.670 -0.368 0.261 -1.006 0.045 0.279 1.420 -4.207 -1.073 0.407 1.083 0.153 -0.847 -2.408 -0.609 -0.913 ML 10 8 6 13 6 1 4 187 367 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 4 187 367 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 2 183 363 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 5 189 368 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 188 368 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 73 g g = = MP 15 14 6 19 6 2 10 188 367 -12.316 -12.255 -0.002 -11.032 -11.311 -11.706 -3.657 -0.153 -1.670 0.167 -3.848 0.479 0.518 -0.448 -0.935 0.507 2.143 -0.869 -0.238 -0.141 -0.950 -0.367 ML 16 14 6 19 6 1 4 185 365 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 185 365 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 182 362 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 5 187 367 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 5 186 366 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 72 g c = = MP 21 20 6 25 6 2 8 186 365 -12.316 -12.255 -0.002 -11.032 -11.311 -11.706 -2.077 -0.742 -1.227 1.570 -3.854 -1.600 -0.744 -2.356 -1.149 1.654 0.222 -0.278 -0.459 1.021 0.353 -0.069 ML 22 20 6 25 6 1 4 184 364 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 184 364 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 2 181 361 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 4 185 365 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 5 185 364 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 71 g c = = MP 27 26 6 31 4 2 6 184 363 -11.246 -3.576 -0.130 -8.945 -0.943 -1.512 -2.676 0.868 -5.960 -2.027 0.735 -6.000 0.494 2.825 -0.435 0.367 -0.880 -5.465 -3.714 -4.584 ML 28 26 6 31 4 1 3 182 362 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 4 182 362 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 2 181 361 -12.737 -14.007 -2.036 -0.404 IL 31 31 5 31 4 1 4 183 362 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 3 182 362 -4.599 -3.228 -0.231 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - a - + MR 33 32 6 35 3 1 5 181 361 -12.533 -0.001 -10.850 0.290 -0.761 0.261 -0.015 D 34 32 6 35 3 0 2 181 360 -0.100 -5.449 -4.501 IR 35 35 3 35 3 1 2 181 360 -4.599 -3.228 -0.231 0.000 0.000 0.000 0.000 [ MATR 7 ] - 67 - a - + MR 36 35 3 38 3 1 4 180 360 -12.533 -0.001 -10.850 0.624 -1.101 0.392 -0.554 D 37 35 3 38 3 0 1 179 359 -10.271 -0.066 -4.501 IR 38 38 3 38 3 1 2 181 361 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 66 - A - + MR 39 38 3 41 5 1 3 179 359 -3.581 -0.128 -11.119 -11.331 -12.223 1.869 -6.083 -1.947 -3.771 D 40 38 3 41 5 0 0 177 357 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 2 179 358 -4.819 -2.907 -0.295 -6.498 -7.604 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 64 g c = = MP 42 41 3 46 6 2 4 178 358 -12.198 -12.137 -0.002 -10.914 -11.194 -11.589 -0.760 -4.133 -4.161 0.045 -4.092 -5.008 1.769 -4.469 -1.020 2.068 -4.790 0.714 1.742 -1.781 -0.671 -3.389 ML 43 41 3 46 6 1 2 177 357 -9.661 -10.007 -0.083 -4.416 -9.857 -7.386 -3.607 -3.287 -4.396 1.914 MR 44 41 3 46 6 1 1 176 356 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 172 351 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 178 357 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 177 357 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 63 u a = = MP 48 47 6 52 6 2 4 176 356 -12.316 -12.255 -0.002 -11.032 -11.311 -11.706 -6.603 -6.180 -6.590 0.565 -5.593 -7.407 1.930 -6.205 -6.501 2.141 -6.995 -0.317 2.309 -6.736 -1.288 -5.214 ML 49 47 6 52 6 1 1 174 354 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 174 354 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 170 350 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 176 355 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 175 355 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 62 g c = = MP 54 53 6 58 6 2 4 174 354 -12.316 -12.255 -0.002 -11.032 -11.311 -11.706 -6.501 -6.166 -6.511 1.136 0.306 -7.339 1.993 -6.140 -6.416 2.374 -6.922 -2.319 1.093 -6.668 -0.069 -5.161 ML 55 53 6 58 6 1 1 173 353 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 172 352 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 169 349 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 174 354 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 173 353 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 61 c g = = MP 60 59 6 64 4 2 3 172 352 -11.447 -3.568 -0.129 -10.068 -6.460 -2.406 0.621 0.230 -5.528 -7.299 2.446 -6.135 -6.391 1.819 -6.897 -3.798 -0.212 -6.630 1.621 -5.152 ML 61 59 6 64 4 1 1 171 351 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 170 350 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 169 349 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 1 172 352 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 171 351 -3.791 -0.126 -6.491 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - A - + - ML 66 65 6 68 3 1 2 170 350 -12.361 -0.001 -11.015 1.423 -1.372 -1.062 -1.142 D 67 65 6 68 3 0 0 168 348 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 171 351 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - g - + - ML 69 68 3 71 3 1 2 169 349 -12.361 -0.001 -11.015 0.474 -1.333 0.905 -1.552 D 70 68 3 71 3 0 0 167 347 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 170 350 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - + - ML 72 71 3 74 5 1 2 168 348 -11.303 -0.128 -3.580 -11.331 -12.223 1.403 -2.170 -5.311 0.147 D 73 71 3 74 5 0 0 166 346 -4.959 -0.803 -4.221 -2.596 -2.508 IL 74 74 3 74 5 1 1 168 348 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 17 59 u a = = MP 75 74 3 79 6 2 2 167 347 -12.198 -12.137 -0.044 -10.914 -11.194 -5.133 -1.420 -4.786 -4.867 0.713 -4.588 -5.712 1.765 -5.030 -2.517 1.764 -5.455 0.892 1.981 -5.009 -0.098 -3.977 ML 76 74 3 79 6 1 1 167 346 -9.661 -10.007 -0.083 -4.416 -9.857 -7.386 -3.607 -3.287 -4.396 1.914 MR 77 74 3 79 6 1 1 165 345 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 161 341 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 167 347 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 167 346 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 18 58 g c = = MP 81 80 6 85 6 2 2 166 346 -12.278 -12.217 -0.233 -10.994 -3.628 -3.892 -0.605 -4.330 -4.346 1.192 0.291 -5.196 1.894 -4.622 -2.491 2.052 -4.967 -1.298 1.144 -4.488 -0.239 -3.555 ML 82 80 6 85 6 1 1 164 344 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 163 343 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 160 340 -11.389 -10.087 -5.884 -6.566 -6.584 -0.058 IL 85 85 5 85 6 1 1 165 345 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 165 345 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 19 57 c g = = MP 87 86 6 91 6 2 2 164 344 -12.048 -11.987 -0.352 -10.763 -11.043 -2.220 -5.134 -2.005 -5.259 0.967 -2.356 -6.101 2.444 -1.364 -5.257 1.638 -5.801 0.152 1.672 -5.407 -2.537 -4.244 ML 88 86 6 91 6 1 1 163 343 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 161 340 -10.216 -8.945 -4.854 -8.923 -4.057 -0.151 -3.671 -5.128 1.943 -4.410 D 90 86 6 91 6 0 0 159 339 -12.983 -11.681 -7.478 -8.160 -8.178 -0.019 IL 91 91 5 91 6 1 1 164 344 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 164 344 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 20 56 c g = = MP 93 92 6 97 6 2 2 163 343 -11.700 -11.639 -0.692 -10.415 -10.695 -1.399 -4.040 -4.174 -4.210 1.491 -3.970 -5.060 1.949 -4.404 -4.245 0.569 -4.808 -0.701 1.445 0.183 1.427 -1.812 ML 94 92 6 97 6 1 1 161 341 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 160 339 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 159 339 -14.841 -13.539 -9.336 -10.018 -10.036 -0.005 IL 97 97 5 97 6 1 1 163 342 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 162 342 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 21 55 a u = = MP 99 98 6 103 4 2 2 161 341 -9.983 -10.190 -0.006 -8.604 -3.599 -1.422 -3.755 2.146 -3.528 -4.594 1.618 -3.950 -3.800 0.916 -4.352 0.863 1.459 -3.890 0.003 -2.881 ML 100 98 6 103 4 1 1 160 340 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 156 336 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 159 339 -11.028 -10.709 -0.013 -6.980 IL 103 103 5 103 4 1 1 161 341 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 161 340 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - a - = - ML 105 104 6 107 3 1 1 159 339 -12.361 -0.037 -5.301 0.715 -0.039 -1.118 -0.113 D 106 104 6 107 3 0 0 149 329 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 159 339 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - u - + - ML 108 107 3 110 3 1 1 159 339 -12.324 -0.448 -1.905 0.305 -0.017 -1.283 0.449 D 109 107 3 110 3 0 0 133 312 -8.721 -4.234 -0.082 IL 110 110 3 110 3 1 1 161 341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - u - + - ML 111 110 3 113 3 1 1 161 341 -0.152 -3.881 -4.953 0.286 -0.343 -0.423 0.318 D 112 110 3 113 3 0 0 80 259 -11.993 -1.060 -0.943 IL 113 113 3 113 3 1 1 161 341 -0.148 -3.402 -8.519 0.000 0.000 0.000 0.000 [ MATL 24 ] 52 - a - + - ML 114 113 3 116 3 1 1 12 30 -12.062 -0.001 -10.716 0.647 -0.155 -1.252 0.158 D 115 113 3 116 3 0 0 11 30 -11.400 -0.591 -1.575 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 53 - c - + - ML 117 116 3 119 3 1 1 10 28 -12.270 -0.156 -3.286 -0.020 0.093 -0.122 0.040 D 118 116 3 119 3 0 0 11 29 -9.862 -0.491 -1.799 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 54 - a - = - ML 120 119 3 122 2 1 1 1 1 * 0.000 0.656 -0.837 -0.238 0.024 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 // HMMER3/f [3.1b3 | July 2016] NAME Thaum-NC-Intron DESC This file includes non-canonical tRNA introns found in Thaumarchaeota LENG 40 MAXL 197 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Wed Mar 22 01:15:20 2017 COM [1] cmbuild -F --hand --enone Thaum-BHB-noncan-nc.cm Thaum-BHB-noncan.sto NSEQ 78 EFFN 78.000000 CKSUM 3900835696 STATS LOCAL MSV -10.2726 0.88729 STATS LOCAL VITERBI -11.8195 0.88729 STATS LOCAL FORWARD -1.6436 0.88729 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33822 1.44710 1.27619 1.49907 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 0.00000 * 1 1.77560 0.86924 1.65997 1.50867 1 c = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 2 1.37050 1.16848 1.15712 2.11368 2 g = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 3 1.88947 1.48397 0.84036 1.65780 3 g = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 4 1.32984 2.59566 1.05218 1.16569 4 g = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 5 1.72362 2.10847 0.41982 3.14676 5 G = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 6 2.28105 1.57284 0.99423 1.13831 7 g = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 7 2.34829 1.42519 1.11886 1.08663 8 u = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 8 1.96572 1.11769 1.08631 1.63245 9 g = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 9 1.70274 1.07001 1.48619 1.39200 10 c = - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 10 0.39988 2.33727 2.12233 2.17813 12 A + - - 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 11 1.05745 2.31012 0.75890 2.46240 13 g + - - 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 12 0.41349 2.89011 5.06738 1.28448 15 A + - - 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 13 2.11175 1.59939 1.16114 1.01108 17 u = - < 1.38629 1.38629 1.38629 1.38629 0.03057 6.68711 3.54522 1.46634 0.26236 1.09861 0.40547 14 1.65701 1.16339 1.21280 1.61193 18 c = - < 1.38629 1.38629 1.38629 1.38629 0.17407 6.65910 1.84211 1.46634 0.26236 3.22476 0.04058 15 1.95314 0.97625 1.32219 1.53759 19 c = - < 1.38629 1.38629 1.38629 1.38629 0.26659 6.48808 1.45892 1.46634 0.26236 4.99546 0.00679 16 1.67779 1.38662 1.98775 0.85263 20 u = - < 1.38629 1.38629 1.38629 1.38629 0.54636 6.22546 0.86996 1.46634 0.26236 5.70227 0.00334 17 1.17151 1.59059 1.43121 1.39724 21 a = - < 1.38629 1.38629 1.38629 1.38629 0.00681 5.68591 5.68591 1.46634 0.26236 0.00393 5.54188 18 0.89050 1.41342 2.16154 1.46493 22 a = - _ 1.38629 1.38629 1.38629 1.38629 0.02765 6.68711 3.64868 1.46634 0.26236 1.09861 0.40547 19 1.17493 1.39801 2.27534 1.07497 23 u + - _ 1.38629 1.38629 1.38629 1.38629 0.31183 6.66202 1.32196 1.46634 0.26236 3.12993 0.04471 20 1.18822 1.62410 1.67969 1.16566 24 u + - _ 1.38629 1.38629 1.38629 1.38629 2.48405 0.12394 3.40639 2.35743 0.09945 0.73212 0.65564 21 0.93777 1.49349 2.25398 1.27679 52 a + - _ 1.38629 1.38629 1.38629 1.38629 0.00301 6.50181 6.50181 1.46634 0.26236 0.45569 1.00516 22 1.40021 1.32150 1.47118 1.35842 53 c + - _ 1.38629 1.38629 1.38629 1.38629 0.11001 6.62440 2.27447 1.46634 0.26236 0.32655 1.27802 23 0.93182 1.96645 1.55150 1.36932 54 a = - _ 1.38629 1.38629 1.38629 1.38629 0.93389 6.56964 0.50158 1.46634 0.26236 1.92413 0.15783 24 1.67035 1.90750 1.34038 0.91225 55 u = - > 1.38629 1.38629 1.38629 1.38629 0.00681 5.68591 5.68591 1.46634 0.26236 0.87953 0.53610 25 1.70154 1.77666 0.88359 1.44775 56 g = - > 1.38629 1.38629 1.38629 1.38629 0.00396 6.22546 6.22546 1.46634 0.26236 0.31007 1.32198 26 1.62095 1.63718 0.89962 1.60425 57 g = - > 1.38629 1.38629 1.38629 1.38629 0.00277 6.58498 6.58498 1.46634 0.26236 0.35472 1.20856 27 1.32090 1.32161 1.23715 1.73619 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.00257 6.65910 6.65910 1.46634 0.26236 0.08287 2.53161 28 1.26007 1.52477 1.29346 1.49443 59 a = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 29 2.86264 1.45565 0.46374 2.51696 61 G = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 30 1.55024 1.12184 1.17289 1.87960 62 c = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 31 1.16345 1.28224 1.32871 1.92854 63 a = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 32 1.27108 1.25348 1.35484 1.73742 64 c = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 33 0.09085 5.60292 2.73584 3.99984 66 A + - - 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 34 0.95379 2.14976 1.11484 1.77055 67 a + - - 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 35 1.18549 1.91401 1.20558 1.39676 69 a + - - 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 36 1.85986 0.73161 1.80276 1.61783 71 c = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 37 2.37499 0.96410 1.52876 1.17489 72 c = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 38 2.35190 1.24234 0.87379 1.61577 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 39 1.47634 1.51923 0.87857 1.98580 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68711 6.68711 1.46634 0.26236 1.09861 0.40547 40 1.94921 1.28877 1.38434 1.10409 75 u = - > 1.38629 1.38629 1.38629 1.38629 0.00125 6.68586 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Glu.cm0000644000543100007160000017243612573631164021427 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Glu STATES 289 NODES 76 CLEN 90 W 130 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:33 2015 COM [1] cmbuild --hand --enone Glu_model.cm aligntRNAdb-Glu.sto COM [2] cmcalibrate --seed 208 Glu_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 4119089519 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.7804 0.71870 ECMLC 0.63123 -6.84597 2.81938 1600000 535617 0.002240 ECMGC 0.31835 -49.49375 -34.17484 1600000 52482 0.007622 ECMLI 0.64172 -6.37805 3.09215 1600000 522970 0.002295 ECMGI 0.33498 -44.84892 -30.48497 1600000 49170 0.008135 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 130 209 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 38 131 210 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 39 131 210 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - A - + MR 3 2 3 5 5 23 46 130 209 -13.126 -0.001 -12.941 -13.153 -14.045 1.393 -4.608 -1.473 -0.041 D 4 2 3 5 5 14 35 128 207 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 38 130 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 G U = = MP 6 5 3 10 6 24 46 129 208 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 0.528 -12.435 -13.590 -7.893 -10.336 -9.854 1.042 -10.524 3.642 -7.817 -11.599 -9.723 -8.892 ML 7 5 3 10 6 16 37 127 206 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 37 126 206 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 34 122 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 37 128 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 38 128 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 U A = = MP 12 11 6 16 6 23 45 127 206 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.671 -9.692 -10.530 -7.599 -10.650 -9.794 3.911 -10.943 -1.686 -9.332 ML 13 11 6 16 6 16 37 125 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 36 124 204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 33 120 199 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 37 126 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 37 126 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 U A = = MP 18 17 6 22 6 22 43 125 204 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.042 -11.904 -11.685 -9.624 -9.952 -11.673 -6.768 -11.158 -10.413 -9.607 -11.894 -11.182 3.991 -10.562 -4.017 -5.798 ML 19 17 6 22 6 15 36 123 202 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 36 123 202 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 33 119 198 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 37 124 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 37 124 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 C G = = MP 24 23 6 28 6 20 41 123 202 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 3.469 -9.692 -10.530 -7.599 -10.650 -9.795 1.907 -10.943 0.206 -9.332 ML 25 23 6 28 6 15 36 121 200 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 36 121 200 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 33 117 196 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 37 122 201 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 37 122 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 U A = = MP 30 29 6 34 6 19 39 121 200 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.303 -9.692 -10.530 -7.599 -10.650 -9.795 3.137 -10.943 2.237 -9.332 ML 31 29 6 34 6 15 36 119 198 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 35 119 198 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 33 116 195 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 120 199 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 120 199 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 u a = = MP 36 35 6 40 6 17 37 119 198 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.067 -9.692 -10.530 -7.599 -10.650 -9.795 2.955 -10.943 2.635 0.079 ML 37 35 6 40 6 14 35 117 197 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 35 117 196 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 32 115 194 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 36 118 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 36 118 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 a u = = MP 42 41 6 46 4 15 35 117 196 -13.280 -13.487 -0.001 -11.901 -10.099 -8.758 -10.295 2.834 -12.435 -13.564 -7.891 -10.338 -9.854 2.090 -10.523 2.200 -7.817 -11.595 -9.723 -8.893 ML 43 41 6 46 4 13 34 116 195 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 33 115 194 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 32 114 193 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 35 117 196 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 35 117 196 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 115 194 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 32 113 192 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 34 116 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 114 193 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 11 31 113 192 -8.445 -0.004 IL 53 53 3 53 2 12 33 114 194 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 113 192 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 89 168 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 89 168 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 25 G C = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.992 -8.636 -14.236 -6.105 -13.634 -9.805 -7.938 -13.726 -10.004 3.982 -10.199 -2.576 -8.300 -10.270 -10.385 -13.286 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 24 U A = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.979 -11.872 -11.590 -9.422 -9.866 -11.595 -6.520 -11.039 -10.418 -9.404 -11.800 -11.064 3.990 -10.579 -3.822 -5.863 ML 65 63 6 68 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 23 U A = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 22 G C = = MP 76 75 6 80 4 2 3 17 36 -13.280 -13.487 -0.001 -11.901 -12.035 -8.635 -14.479 -6.121 -13.654 -9.791 -7.938 -13.882 -10.006 3.973 -10.195 -2.918 -8.306 -2.912 -10.394 -13.636 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 33 -14.190 -0.033 -5.461 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.157 -0.863 -1.152 1.968 -9.865 -3.540 -9.351 D 86 84 3 87 3 0 0 13 32 -10.229 -5.742 -0.028 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 13 32 -13.295 -0.261 -2.597 -0.884 -2.925 -6.831 1.730 D 89 87 3 90 3 0 0 12 31 -14.501 -10.014 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 12 31 -13.034 -6.138 -0.021 0.171 -2.320 -6.400 1.412 D 92 90 3 93 3 0 0 12 31 -14.753 -0.232 -2.750 IL 93 93 3 93 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 12 31 -13.121 -0.001 -11.775 0.851 -3.877 0.572 -0.642 D 95 93 3 96 3 0 0 10 28 -14.679 -2.914 -0.205 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 97 96 3 99 3 1 1 11 30 -13.316 -3.677 -0.118 -2.452 -3.369 -0.451 1.580 D 98 96 3 99 3 0 0 9 27 -14.475 -9.988 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 12 30 -9.646 -0.006 -8.300 -4.385 -3.995 -5.190 1.949 D 101 99 3 102 3 0 0 7 25 -15.548 -0.001 -9.940 IL 102 102 3 102 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 1 76 155 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 77 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - G - + - ML 109 108 2 111 5 1 1 76 155 -13.126 -0.001 -12.941 -13.153 -14.045 -0.910 -10.150 1.793 -9.302 D 110 108 2 111 5 0 0 74 153 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 76 155 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 48 A U = = MP 112 111 3 116 6 2 2 75 154 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.563 -12.435 -13.590 -7.893 -10.336 -9.854 0.970 -10.524 1.140 -7.817 -11.599 -9.723 -8.892 ML 113 111 3 116 6 1 1 72 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 72 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 68 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 74 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 74 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 47 U A = = MP 118 117 6 122 6 2 2 73 152 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.958 -11.261 -3.769 -7.505 -8.801 -10.594 -4.513 -9.702 -3.332 -7.510 -10.648 -9.501 3.908 -10.953 -1.370 -1.748 ML 119 117 6 122 6 1 1 71 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 70 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 66 145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 72 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 72 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 29 46 G C = = MP 124 123 6 128 6 2 2 71 150 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.929 -8.638 -13.927 -2.112 -13.602 -9.828 -7.936 -13.515 -10.002 3.977 -10.203 -6.555 -8.290 -10.285 -10.370 -12.872 ML 125 123 6 128 6 1 1 69 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 68 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 65 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 70 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 70 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 30 45 A U = = MP 130 129 6 134 6 2 2 69 148 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.093 -2.603 -10.286 3.096 -12.416 -13.526 -7.868 -10.332 -9.850 1.000 -10.518 2.312 -7.798 -2.683 -9.702 -2.779 ML 131 129 6 134 6 1 1 67 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 66 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 63 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 68 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 68 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 44 U G = = MP 136 135 6 140 4 2 2 67 146 -13.280 -13.487 -0.095 -3.975 -11.109 -11.390 -10.426 -7.626 -3.173 -10.571 -0.879 -9.692 -10.530 -7.598 -10.650 -2.614 2.375 -10.943 3.307 -3.582 ML 137 135 6 140 4 1 1 66 145 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 64 143 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 62 142 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 67 146 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 66 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - U - + - ML 142 141 6 144 3 1 1 65 144 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 143 141 6 144 3 0 0 60 139 -11.660 -7.173 -0.010 IL 144 144 3 144 3 1 1 65 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - U - + - ML 145 144 3 147 3 1 1 64 143 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 146 144 3 147 3 0 0 60 139 -11.660 -7.173 -0.010 IL 147 147 3 147 3 1 1 64 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - U - * - ML 148 147 3 150 3 1 1 63 142 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 149 147 3 150 3 0 0 60 139 -11.660 -7.173 -0.010 IL 150 150 3 150 3 1 1 63 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - U - * - ML 151 150 3 153 3 1 1 62 141 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 152 150 3 153 3 0 0 60 139 -11.660 -7.173 -0.010 IL 153 153 3 153 3 1 1 62 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - C - * - ML 154 153 3 156 3 1 1 61 140 -14.096 -0.000 -12.750 -10.154 1.999 -10.784 -8.873 D 155 153 3 156 3 0 0 60 139 -11.660 -0.022 -6.051 IL 156 156 3 156 3 1 1 61 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - A - + - ML 157 156 3 159 3 1 1 60 139 -3.981 -0.095 -12.844 1.814 -9.104 -1.062 -8.974 D 158 156 3 159 3 0 0 52 131 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 71 150 -0.336 -2.274 -9.949 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -8.332 -8.055 -2.655 1.939 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - U - + - ML 166 165 2 168 3 1 4 50 69 -14.190 -0.000 -12.844 -0.399 -4.146 -4.089 1.645 D 167 165 2 168 3 0 2 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - G - + - ML 169 168 3 171 2 1 3 49 68 -14.843 -0.000 0.529 -3.793 1.295 -4.986 D 170 168 3 171 2 0 2 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 3 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 32 50 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - G - + - ML 231 230 2 233 3 1 2 32 50 -5.907 -0.024 -12.844 -4.428 -10.504 1.982 -9.482 D 232 230 2 233 3 0 0 30 48 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 32 50 -3.401 -0.167 -6.101 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - U - + - ML 234 233 3 236 5 1 2 31 49 -13.126 -0.001 -12.941 -13.153 -14.045 -9.459 -3.519 -10.314 1.967 D 235 233 3 236 5 0 0 30 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 93 C G = = MP 237 236 3 241 6 2 2 30 48 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.812 -9.692 -10.530 -7.600 -10.650 -9.795 0.320 -10.943 -0.548 -9.332 ML 238 236 3 241 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 92 A U = = MP 243 242 6 247 6 2 2 28 46 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.115 -8.796 -10.282 3.519 -11.852 -13.136 -3.471 -3.708 -9.868 -0.925 -10.517 1.483 -1.539 -11.517 -3.139 -0.775 ML 244 242 6 247 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 91 U A = = MP 249 248 6 253 6 2 2 26 44 -5.395 -14.017 -0.035 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.778 -10.571 0.442 -9.692 -10.530 -7.600 -10.650 -9.795 3.769 -10.943 -0.235 -9.332 ML 250 248 6 253 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 25 43 -5.632 -5.895 -1.349 -7.550 -0.833 -7.987 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 76 90 G C = = MP 255 254 6 259 6 2 2 24 42 -14.056 -13.995 -0.001 -12.772 -13.052 -13.447 -11.587 -8.628 -12.830 0.465 -13.416 -9.941 -7.910 -12.660 -9.965 3.859 -10.209 -3.394 -8.215 -10.349 -10.271 -11.567 ML 256 254 6 259 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -9.677 -8.406 -0.160 -8.384 -3.518 -6.598 -3.407 1.879 -4.176 -2.533 D 258 254 6 259 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 77 89 G C = = MP 261 260 6 265 4 2 2 22 40 -13.280 -13.487 -0.057 -4.699 -11.885 -8.640 -13.741 -1.076 -13.580 -9.844 -7.936 -13.381 -10.000 3.954 -10.207 -6.548 -8.283 -10.295 -10.360 -12.635 ML 262 260 6 265 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 78 - U - + - ML 267 266 6 269 3 1 1 20 38 -5.265 -0.038 -12.788 -3.088 -4.759 -2.937 1.893 D 268 266 6 269 3 0 0 19 37 -10.953 -0.119 -3.668 IL 269 269 3 269 3 1 1 20 38 -3.858 -0.120 -6.558 0.000 0.000 0.000 0.000 [ MATL 69 ] 80 - U - + - ML 270 269 3 272 3 1 1 19 37 -14.187 -0.000 -12.841 -2.430 -3.530 -3.144 1.854 D 271 269 3 272 3 0 0 18 36 -7.487 -0.469 -1.878 IL 272 272 3 272 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 81 - A - + - ML 273 272 3 275 3 1 1 18 36 -14.190 -0.000 -12.844 1.391 -3.182 -0.469 -0.878 D 274 272 3 275 3 0 0 17 36 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 82 - g - + - ML 276 275 3 278 3 1 1 17 35 -6.159 -0.021 -12.844 0.755 -3.575 0.903 -1.476 D 277 275 3 278 3 0 0 15 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 17 35 -3.217 -0.191 -5.917 0.000 0.000 0.000 0.000 [ MATL 72 ] 84 - A - + - ML 279 278 3 281 3 1 1 16 34 -14.190 -0.000 -12.844 1.795 -5.076 -3.633 -1.249 D 280 278 3 281 3 0 0 15 34 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 85 - g - + - ML 282 281 3 284 3 1 1 15 33 -4.877 -0.105 -4.779 -1.368 -2.561 0.877 0.684 D 283 281 3 284 3 0 0 13 31 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 17 35 -1.485 -0.650 -7.489 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.812 -3.518 -2.437 1.885 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Glu LENG 90 MAXL 177 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:34 2015 COM [1] cmbuild --hand --enone Glu_model.cm aligntRNAdb-Glu.sto NSEQ 282 EFFN 3.549957 CKSUM 4119089519 STATS LOCAL MSV -9.2308 0.71870 STATS LOCAL VITERBI -9.7026 0.71870 STATS LOCAL FORWARD -3.3724 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37161 1.66146 1.42918 1.14906 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 0.00000 * 1 1.72994 3.24383 0.30777 3.02405 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 2 3.16918 1.76512 2.95854 0.30802 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 3 3.60843 2.33160 3.42085 0.17069 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 4 2.73849 0.62651 2.50685 1.14145 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 5 2.66745 1.30561 2.45420 0.55577 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 6 2.28357 1.45726 2.09805 0.61155 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 7 1.09562 2.72852 0.64832 2.55839 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 8 3.09328 2.97787 3.62592 0.13111 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 9 0.09048 3.74401 3.42206 3.49992 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 10 2.87051 3.75122 0.11178 3.66509 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 11 3.62126 2.33132 3.42676 0.17009 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 12 3.59823 2.38965 3.40938 0.16499 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 13 2.66362 3.39240 0.15442 3.22482 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 14 0.09048 3.74401 3.42206 3.49992 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04711 4.16487 3.49062 1.46634 0.26236 1.09861 0.40547 15 0.13935 3.41197 2.90092 3.16707 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.39665 4.14981 1.16584 1.46634 0.26236 1.37689 0.29084 16 1.62013 1.93700 2.32249 0.57989 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13876 3.79898 2.23331 1.46634 0.26236 3.12362 0.04499 17 1.30718 1.80961 2.11583 0.80931 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.71466 3.71039 0.72119 1.46634 0.26236 0.23075 1.57959 18 1.01968 1.99723 1.33261 1.42798 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04873 3.73888 3.73888 1.46634 0.26236 1.85806 0.16957 19 1.63681 1.92299 1.79807 0.70601 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.73640 3.80671 0.69526 1.46634 0.26236 3.10826 0.04571 20 1.32818 1.65104 1.73861 1.00124 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08876 3.15907 3.15907 1.46634 0.26236 0.04670 3.08730 21 0.09048 3.74401 3.42206 3.49992 21 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 22 3.49753 0.18144 3.22344 2.34507 22 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 23 0.18803 3.59589 2.22395 3.32990 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 24 0.20026 3.58520 2.12987 3.35523 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 25 3.79396 0.14195 3.56806 2.50569 25 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 26 1.86961 3.21876 0.29118 2.83996 26 G + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 27 0.64274 2.90892 1.03892 2.72143 27 A = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 28 3.46351 2.88837 3.26922 0.13356 28 U = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 29 2.76873 3.68414 0.12217 3.60675 29 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 30 1.17125 2.23476 0.79203 2.03960 30 g = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 31 2.39079 1.48679 2.14524 0.57039 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.07581 4.16487 2.85646 1.46634 0.26236 1.09861 0.40547 32 3.01244 2.90984 3.54305 0.14223 32 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 33 3.01244 2.90984 3.54305 0.14223 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 34 3.01244 2.90984 3.54305 0.14223 34 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 35 3.01244 2.90984 3.54305 0.14223 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 36 3.35291 0.12271 3.91822 2.80310 36 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 0.43211 1.04737 37 0.29005 2.96385 2.03482 2.66718 37 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07581 2.85646 4.16487 1.58490 0.22937 1.09861 0.40547 38 2.45473 2.49396 2.70004 0.26876 43 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 39 1.26152 2.35028 0.68988 2.12192 44 G = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 40 2.32298 1.10764 2.04065 0.81704 45 u = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 41 3.79227 0.14579 3.52716 2.48014 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 42 0.15068 3.45298 2.67880 3.22947 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 43 2.94685 1.44441 2.70696 0.43871 48 U = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 44 1.59318 2.16950 2.44424 0.51803 49 U + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 45 1.08902 2.51338 0.75922 2.16781 50 g + - , 1.38629 1.38629 1.38629 1.38629 1.16914 4.16487 0.39477 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 47 1.80328 1.30585 1.07718 1.49724 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 48 1.80108 1.30652 1.07800 1.49680 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 49 1.80013 1.30681 1.07836 1.49661 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 50 1.79979 1.30692 1.07849 1.49654 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 51 1.79975 1.30693 1.07850 1.49653 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 52 1.79984 1.30690 1.07847 1.49655 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 57 1.73105 1.21987 1.16181 1.53845 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 58 1.73092 1.21992 1.16186 1.53841 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 59 1.73086 1.21995 1.16189 1.53839 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 60 1.73093 1.21992 1.16186 1.53841 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 61 1.73124 1.21979 1.16175 1.53850 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 62 1.73199 1.21947 1.16147 1.53872 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04507 3.12202 64 2.97969 3.99866 0.10205 3.58025 69 G + - , 1.38629 1.38629 1.38629 1.38629 0.04298 3.62908 4.16487 0.92747 0.50344 1.09861 0.40547 65 2.82431 2.59061 3.34470 0.18584 71 U + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 66 3.04232 0.38318 2.81871 1.55636 72 C = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 67 0.99388 2.00169 1.11939 1.78214 73 a = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 68 2.76420 1.44833 2.54542 0.47229 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.03761 3.84512 4.16487 1.11433 0.39770 1.09861 0.40547 69 2.20003 3.32829 0.20732 3.20425 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 70 2.62028 3.60416 0.13907 3.51180 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.05803 4.16487 3.19784 1.46634 0.26236 1.09861 0.40547 71 2.20985 2.34856 2.63328 0.32444 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05007 3.41417 4.13923 0.78905 0.60564 0.60094 0.79472 72 2.12408 2.27819 2.62344 0.34894 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03160 4.16345 4.16345 1.46634 0.26236 1.04113 0.43549 73 0.72093 2.14261 1.68416 1.55707 81 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 74 1.02117 2.22265 1.06545 1.67701 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04114 3.69801 4.16487 0.98345 0.46843 1.09861 0.40547 75 0.36929 2.52999 2.44554 1.94884 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 76 1.53240 2.01789 1.15400 1.09161 85 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08080 3.26885 3.22965 0.86161 0.54902 1.09861 0.40547 77 2.27673 2.29721 2.56856 0.32823 88 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03235 4.14054 4.14054 1.46634 0.26236 0.57942 0.82149 78 3.69935 0.16466 3.44205 2.35304 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 79 3.42058 0.24320 3.15840 1.96114 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 80 0.57093 2.71248 1.24109 2.53125 91 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 81 2.07814 1.41830 1.81161 0.75647 92 u = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 82 1.87791 2.97954 0.30774 2.79417 93 G = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 83 2.79300 1.04369 2.53177 0.67906 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 84 1.09118 2.26851 0.88802 1.90219 95 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 85 0.92889 2.62285 0.80916 2.43975 96 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 86 1.40383 2.67654 0.50467 2.50296 97 G = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 87 0.19889 3.59570 2.13363 3.36637 98 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 88 0.36225 3.12588 1.57582 2.93458 99 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 89 3.24349 1.51793 3.04435 0.36502 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 90 0.72439 2.15961 1.93305 1.36530 101 a + - : 1.38629 1.38629 1.38629 1.38629 0.01590 4.14922 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Arg.cm0000644000543100007160000017241212573631164021403 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Arg STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:50:43 2015 COM [1] cmbuild --hand --enone Arg_model.cm aligntRNAdb-Arg.sto COM [2] cmcalibrate --seed 208 Arg_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1565971551 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.8982 0.71868 ECMLC 0.61910 -6.82902 2.97115 1600000 517803 0.002317 ECMGC 0.28179 -45.40831 -28.11760 1600000 52249 0.007656 ECMLI 0.60366 -6.56171 3.42015 1600000 496707 0.002416 ECMGI 0.30075 -40.08550 -24.07613 1600000 49331 0.008108 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 125 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 16 38 101 127 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 39 102 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 22 46 100 126 -13.126 -0.001 -12.941 -13.153 -14.045 1.575 -3.133 -3.350 -0.307 D 4 2 3 5 5 13 34 99 124 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 16 37 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 U A = = MP 6 5 3 10 6 22 46 99 125 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.838 -10.358 -10.399 1.397 -3.264 -10.851 -4.779 -9.801 -10.366 -6.825 -10.624 -7.985 3.692 -3.312 -6.766 -4.733 ML 7 5 3 10 6 14 36 97 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 36 97 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 32 95 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 37 99 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 G C = = MP 12 11 6 16 6 22 44 97 123 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.751 -3.392 -13.263 -0.486 -13.513 -9.897 -7.934 -13.018 -9.993 3.909 -10.218 -2.710 -8.261 -10.329 -10.329 -12.059 ML 13 11 6 16 6 14 36 95 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 35 95 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 32 93 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 37 97 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 37 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 G C = = MP 18 17 6 22 6 21 42 95 121 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.051 -1.623 -10.226 2.254 -12.245 -12.745 -7.625 -10.310 -9.815 3.408 -10.453 -2.740 -7.613 -11.284 -9.495 -3.061 ML 19 17 6 22 6 14 35 93 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 35 93 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 32 91 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 36 95 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 37 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 U A = = MP 24 23 6 28 6 19 40 93 119 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.368 -10.571 -1.896 -9.692 -2.291 -7.600 -10.650 -9.795 3.906 -10.943 -2.964 -9.332 ML 25 23 6 28 6 14 35 92 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 35 91 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 31 89 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 14 36 93 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 36 92 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 A U = = MP 30 29 6 34 6 17 38 91 117 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -0.277 -2.542 -10.294 3.709 -12.435 -13.590 -7.893 -10.336 -9.854 -0.647 -10.524 -3.419 -7.818 -11.599 -9.724 0.235 ML 31 29 6 34 6 13 34 90 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 34 89 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 31 87 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 35 91 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 35 90 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 90 A U = = MP 36 35 6 40 6 15 36 89 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -4.014 -5.794 -5.790 3.095 -0.600 -6.642 0.447 -0.671 -5.849 -0.332 -6.420 -2.141 0.821 -0.272 -1.607 -0.466 ML 37 35 6 40 6 13 34 88 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 33 88 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 31 86 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 34 89 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 34 88 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 89 U A = = MP 42 41 6 46 4 13 34 87 113 -13.280 -13.487 -0.001 -11.901 -11.056 -11.181 -10.415 -1.033 -8.808 -10.601 -1.691 -9.700 -10.497 -0.204 -10.639 -9.345 3.828 -10.946 -2.994 -9.307 ML 43 41 6 46 4 12 33 87 112 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 32 87 112 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 31 85 111 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 33 88 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 33 88 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 32 85 111 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 10 30 84 109 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 32 87 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 10 31 84 110 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 9 30 83 109 -8.445 -0.004 IL 53 53 3 53 2 11 31 85 110 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 30 83 109 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 27 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.311 -8.732 -10.571 1.153 -12.589 -11.805 -7.890 -10.606 -9.880 3.206 -10.454 2.180 -7.888 -11.226 -9.817 -9.176 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 U A = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.416 -9.692 -10.530 -7.599 -10.650 -9.795 3.728 -10.943 -4.086 -9.332 ML 71 69 6 74 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 77 75 6 80 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.190 -0.014 -6.670 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.176 -1.137 -0.875 1.941 -8.647 -3.145 -4.505 D 86 84 3 87 3 0 0 15 34 -9.120 -4.633 -0.062 IL 87 87 3 87 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 13 32 -13.040 -1.047 -0.955 0.324 0.508 -5.863 0.389 D 89 87 3 90 3 0 0 12 30 -14.749 -10.262 -0.001 IL 90 90 3 90 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 12 30 -3.792 -3.765 -0.227 -1.304 0.593 -5.155 1.042 D 92 90 3 93 3 0 0 12 30 -15.256 -0.234 -2.738 IL 93 93 3 93 3 1 1 13 31 -3.341 -0.174 -6.041 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 12 30 -13.670 -0.033 -5.460 1.458 -1.135 -0.860 -2.024 D 95 93 3 96 3 0 0 10 29 -13.892 -1.380 -0.700 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - c - + - ML 97 96 3 99 3 1 1 10 29 -13.865 -1.016 -0.985 0.478 0.568 -1.971 -0.202 D 98 96 3 99 3 0 0 9 28 -13.312 -8.825 -0.003 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 7 12 -3.687 -0.117 -11.504 -3.364 0.889 -6.235 1.027 D 101 99 3 102 3 0 0 5 11 -5.270 -0.040 -9.279 IL 102 102 3 102 3 1 1 7 12 -4.620 -0.069 -7.320 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.724 -3.599 -1.798 -1.617 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 A U = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.117 -8.789 -10.297 3.916 -12.068 -2.294 -2.376 -10.316 -9.868 -2.074 -10.527 -3.411 -7.682 -2.649 -9.447 -8.902 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.917 -1.869 -10.046 3.299 -11.925 -12.292 -7.243 -2.706 -9.740 1.166 -10.354 -0.502 1.445 -10.932 -9.141 -4.583 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.384 -10.427 -7.621 -8.778 -10.572 -1.663 -9.693 -10.530 -7.595 -10.650 -9.778 3.966 -5.581 -6.481 -9.332 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 -0.853 -10.294 3.844 -12.434 -13.589 -7.892 -10.336 -9.854 -0.061 -10.524 -6.045 -7.817 -11.599 -9.723 -3.284 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -9.326 1.986 -9.732 -4.820 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -4.785 -10.507 1.986 -9.484 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.943 -9.694 -2.710 -9.279 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -10.276 1.999 -10.915 -8.979 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 51 76 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 53 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 4 51 76 -14.190 -0.000 -12.844 1.824 -2.483 -3.868 -2.233 D 167 165 2 168 3 0 2 50 75 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - + - ML 169 168 3 171 2 1 3 50 75 -14.843 -0.000 0.194 -3.084 1.376 -2.815 D 170 168 3 171 2 0 2 49 74 -8.445 -0.004 IL 171 171 3 171 2 1 3 51 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 49 74 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 36 62 -14.190 -0.054 -4.757 IL 230 230 2 230 3 1 3 39 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - + - ML 231 230 2 233 3 1 4 36 62 -14.136 -0.000 -12.790 1.983 -9.972 -4.504 -9.395 D 232 230 2 233 3 0 1 35 61 -10.902 -0.038 -5.294 IL 233 233 3 233 3 1 2 38 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - U - + - ML 234 233 3 236 5 1 4 35 61 -13.126 -0.001 -12.941 -13.153 -14.045 -2.539 0.191 -7.645 1.423 D 235 233 3 236 5 0 0 34 59 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 2 36 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 88 U A = = MP 237 236 3 241 6 2 4 34 60 -14.078 -4.787 -0.054 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.213 -9.692 -10.530 -7.599 -10.650 -9.795 3.747 -10.943 -2.087 -9.332 ML 238 236 3 241 6 1 1 33 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 2 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 33 59 -5.363 -0.055 -8.874 -7.042 -8.148 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 86 A U = = MP 243 242 6 247 6 2 4 32 58 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.092 -8.752 -10.284 3.551 -12.407 -13.510 -7.858 -1.253 -9.850 1.384 -10.517 -0.635 -0.750 -11.568 -9.693 -8.885 ML 244 242 6 247 6 1 1 31 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 32 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 85 U A = = MP 249 248 6 253 6 2 4 30 56 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.385 -10.426 -7.621 -8.778 -10.572 -0.007 -9.693 -10.529 -0.749 -10.650 -9.780 3.841 -10.943 -4.049 -9.331 ML 250 248 6 253 6 1 1 29 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 29 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 26 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 30 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 30 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 84 G C = = MP 255 254 6 259 6 2 2 28 54 -14.078 -14.017 -0.308 -5.114 -5.435 -2.834 -10.585 -8.709 -10.951 -0.108 -12.790 -10.999 -7.905 -0.771 -9.910 3.850 -10.386 -4.235 -7.984 -10.924 -9.943 -9.566 ML 256 254 6 259 6 1 1 27 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 27 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 25 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 28 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 83 A U = = MP 261 260 6 265 4 2 2 26 52 -12.965 -13.172 -0.364 -2.166 -9.742 -0.454 -9.920 3.260 -11.971 -12.692 -2.736 -9.993 -9.510 2.444 -10.159 -3.698 -7.346 -11.058 -9.232 -8.538 ML 262 260 6 265 4 1 1 26 51 -7.069 -7.251 -0.044 -5.981 1.397 -2.190 -2.336 -0.074 MR 263 260 6 265 4 1 1 25 51 -8.215 -7.244 -0.967 -1.063 0.733 -0.448 -0.464 -0.184 D 264 260 6 265 4 0 0 24 50 -10.709 -10.390 -1.395 -0.693 IL 265 265 5 265 4 1 1 28 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - U - + - ML 267 266 6 269 3 1 2 25 50 -13.720 -0.000 -12.374 -0.301 -0.740 -7.048 1.369 D 268 266 6 269 3 0 0 23 49 -13.769 -0.380 -2.112 IL 269 269 3 269 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 74 - U - + - ML 270 269 3 272 3 1 1 24 49 -14.095 -0.060 -4.609 -0.406 -1.307 -2.846 1.434 D 271 269 3 272 3 0 0 23 48 -11.668 -0.022 -6.059 IL 272 272 3 272 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 75 - c - + - ML 273 272 3 275 3 1 1 23 48 -14.134 -0.011 -7.026 -0.048 0.700 -4.663 0.453 D 274 272 3 275 3 0 0 22 47 -10.953 -0.037 -5.345 IL 275 275 3 275 3 1 1 24 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 76 - A - + - ML 276 275 3 278 3 1 1 22 47 -5.180 -0.070 -5.644 1.263 -1.782 -2.533 0.184 D 277 275 3 278 3 0 0 17 43 -8.762 -0.176 -3.154 IL 278 278 3 278 3 1 1 26 51 -1.037 -0.979 -7.534 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.161 -0.074 -4.332 1.567 -0.989 -4.251 -1.056 D 280 278 3 281 3 0 0 11 30 -10.047 -5.560 -0.032 IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - a - + - ML 282 281 3 284 3 1 1 7 14 -5.413 -0.558 -1.750 0.991 -0.453 -1.181 -0.250 D 283 281 3 284 3 0 0 5 12 -11.767 -7.280 -0.010 IL 284 284 3 284 3 1 1 8 15 -3.702 -0.134 -6.403 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.929 1.098 -4.536 0.368 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Arg LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:50:43 2015 COM [1] cmbuild --hand --enone Arg_model.cm aligntRNAdb-Arg.sto NSEQ 282 EFFN 4.866669 CKSUM 1565971551 STATS LOCAL MSV -8.7521 0.71868 STATS LOCAL VITERBI -9.8288 0.71868 STATS LOCAL FORWARD -3.8353 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.12527 1.65775 1.69732 1.19834 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 0.00000 * 1 1.75016 1.56873 1.90196 0.75786 1 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 2 2.50362 3.68854 0.14522 3.56247 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 3 1.36332 2.65585 0.52904 2.46773 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 4 3.73836 2.69403 3.49062 0.12998 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 5 0.48223 2.46697 1.75948 2.07449 5 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 6 1.22488 1.48457 1.64517 1.24957 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 7 2.46113 1.72013 2.12357 0.48448 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 8 3.48918 3.31552 4.02988 0.08841 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 9 0.05939 4.14899 3.79812 3.93881 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 10 1.73411 3.00033 0.33568 2.83321 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 11 4.16596 2.86777 4.02844 0.09447 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 12 3.26664 1.36035 3.06265 0.41774 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 13 4.14950 2.86579 4.01901 0.09506 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 14 0.05939 4.14899 3.79812 3.93881 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03263 4.38046 3.93305 1.46634 0.26236 1.09861 0.40547 15 0.13825 3.45187 2.90408 3.15518 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.54778 4.37337 0.89366 1.46634 0.26236 1.27096 0.32929 16 1.23008 1.33797 2.13229 1.11844 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.39224 3.86828 1.19217 1.46634 0.26236 3.55577 0.02898 17 1.48287 1.35642 2.06836 0.94407 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.51253 2.88637 1.06350 0.84164 0.56388 0.19953 1.70990 18 0.68052 1.91640 1.81215 1.69712 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04797 4.13102 3.48132 1.46634 0.26236 0.97527 0.47336 19 1.15166 1.28202 2.03599 1.28786 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.46872 4.22108 1.02301 1.46634 0.26236 2.04275 0.13888 20 1.76723 1.14471 2.32933 0.88306 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08674 2.79490 3.81852 0.60932 0.78464 0.05505 2.92687 21 0.05939 4.14899 3.79812 3.93881 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 22 0.10878 4.21025 2.69595 3.87522 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 23 0.46698 3.22163 1.25758 3.01840 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 24 0.10905 4.20526 2.69500 3.87025 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 25 3.06361 0.59877 2.79741 1.07053 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 26 0.40415 2.48401 2.20350 1.97594 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 27 0.08829 3.86534 3.19676 3.78721 29 A = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 28 1.09190 1.97995 1.13885 1.57911 30 a = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 29 3.91215 2.48332 3.73922 0.13609 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 30 3.19777 4.11921 0.07709 4.06994 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 31 0.27892 3.38625 1.80581 3.09616 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 32 3.48918 3.31552 4.02988 0.08841 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 33 3.48918 3.31552 4.02988 0.08841 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 34 3.48918 3.31552 4.02988 0.08841 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 35 3.78163 0.08611 4.30303 3.07483 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 36 3.34011 4.41752 0.06847 3.98045 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 37 0.12681 3.60207 2.84022 3.39857 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 38 3.90342 0.07236 4.41763 3.28160 40 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 39 3.38648 1.89120 3.18139 0.25650 41 U = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 40 4.21436 0.09386 3.98177 2.87969 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 41 0.15499 3.88909 2.33025 3.65572 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 42 1.75388 1.27771 1.81016 0.95556 44 u = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 43 4.06124 3.31986 3.72929 0.08055 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 44 0.30405 2.47511 2.65461 2.22842 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 45 1.28091 2.48408 0.65902 2.10822 47 G + - , 1.38629 1.38629 1.38629 1.38629 1.38473 4.38046 0.30505 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 47 1.80313 1.30590 1.07724 1.49721 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 48 1.80083 1.30660 1.07810 1.49675 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 49 1.79983 1.30691 1.07847 1.49654 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 50 1.79945 1.30703 1.07862 1.49647 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 51 1.79937 1.30705 1.07864 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 52 1.79944 1.30703 1.07862 1.49647 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 53 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 54 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 55 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 57 1.73068 1.22003 1.16195 1.53834 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 58 1.73057 1.22007 1.16199 1.53830 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 59 1.73054 1.22009 1.16200 1.53829 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 60 1.73065 1.22004 1.16196 1.53833 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 61 1.73102 1.21988 1.16183 1.53844 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 62 1.73185 1.21952 1.16152 1.53868 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.07055 2.68647 64 0.08450 3.87261 3.35567 3.67548 66 A + - , 1.38629 1.38629 1.38629 1.38629 0.02607 4.35322 4.35322 1.46634 0.26236 0.49198 0.94524 65 2.08919 1.37821 2.78621 0.57531 67 U + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 66 3.24866 1.41458 3.03829 0.40014 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 67 0.85016 2.20596 1.09563 2.05431 69 a = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 68 3.02156 1.65662 2.48241 0.39016 70 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 69 1.90216 2.53231 0.36113 2.59847 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.15819 4.38046 2.01147 1.46634 0.26236 1.09861 0.40547 70 0.97472 2.48790 0.80874 2.36234 72 g = - < 1.38629 1.38629 1.38629 1.38629 0.19471 4.25118 1.81600 1.46634 0.26236 0.94893 0.48964 71 1.47916 1.68922 2.37197 0.70479 73 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03191 4.15391 4.15391 1.46634 0.26236 0.35301 1.21258 72 1.52204 1.86806 2.30234 0.64001 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05710 4.33292 3.16137 1.46634 0.26236 0.35401 1.21023 73 1.36889 1.14342 2.36756 1.09909 75 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03169 4.35219 4.00022 1.46634 0.26236 0.48229 0.96069 74 0.77060 1.98043 2.14724 1.26426 76 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06152 3.42275 3.61019 0.97028 0.47638 0.87822 0.53704 75 0.54365 1.91771 2.42183 1.69459 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06329 4.36597 3.02359 1.46634 0.26236 1.42286 0.27579 76 0.92776 1.66593 1.87868 1.33653 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29525 3.50913 1.48840 0.72702 0.66039 1.94263 0.15470 77 1.59032 0.98638 2.35077 1.11499 82 c + - _ 1.38629 1.38629 1.38629 1.38629 0.20600 4.09042 1.77530 1.46634 0.26236 0.13416 2.07503 78 2.58844 0.86730 2.30172 0.90463 83 c = - > 1.38629 1.38629 1.38629 1.38629 0.02905 4.24631 4.24631 1.46634 0.26236 0.16667 1.87393 79 2.85118 0.41812 2.54721 1.58163 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 80 0.43948 2.60605 1.51645 2.77559 85 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 81 2.25750 1.26339 2.11439 0.70931 86 u = - > 1.38629 1.38629 1.38629 1.38629 0.05331 3.23406 4.38046 0.54702 0.86434 1.09861 0.40547 82 0.46057 3.19434 1.27992 2.99525 88 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 83 0.54631 2.26167 1.55040 2.25781 89 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 84 1.49440 1.74744 1.35584 1.06808 90 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 85 2.32062 1.91254 2.26465 0.43045 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 86 0.13854 3.74195 2.57905 3.51265 92 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 87 2.76343 0.59188 2.46386 1.20887 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 88 3.77557 0.17027 3.52880 2.26049 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 89 0.84838 2.05836 1.40595 1.61396 95 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 90 0.53541 2.27759 2.35481 1.52728 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01276 4.36787 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TPCsignal0000644000543100007160000000064411021467303016433 0ustar pchanlowelab0.0124 0.8100 0.0083 0.1694 0.1618 0.3320 0.4772 0.0290 0.0992 0.4008 0.2934 0.2066 0.1818 0.1818 0.5083 0.1281 0.1612 0.0289 0.7768 0.0331 0.0000 0.0000 1.0000 0.0000 0.0581 0.0000 0.0000 0.9419 0.0000 0.0000 0.0000 1.0000 0.0000 1.0000 0.0000 0.0000 0.1818 0.0000 0.8182 0.0000 0.9876 0.0000 0.0083 0.0041 0.4959 0.0620 0.1694 0.2727 0.0620 0.1859 0.0083 0.7438 0.0000 1.0000 0.0000 0.0000 0.0289 0.7686 0.0330 0.1694 tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Val.cm0000644000543100007160000017237212573631650021135 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Val-2nd-align STATES 289 NODES 76 CLEN 90 W 108 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:14:01 2015 COM [1] cmbuild --hand --enone Val-final-vert.cm ../Val-2nd-align.sto COM [2] cmcalibrate --seed 208 Val-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 2820005377 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4953 0.71857 ECMLC 0.67600 -7.01674 2.21552 1600000 616024 0.001948 ECMGC 0.29122 -43.33514 -27.38477 1600000 41630 0.009608 ECMLI 0.69151 -6.23492 2.68088 1600000 571147 0.002101 ECMGI 0.30269 -38.91957 -23.70749 1600000 39975 0.010006 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 108 151 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 18 39 109 152 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 41 109 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 117 - A - + MR 3 2 3 5 5 25 47 108 151 -15.061 -0.000 -14.876 -15.088 -15.980 1.954 -4.287 -10.310 -3.748 D 4 2 3 5 5 15 35 106 149 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 39 108 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 116 C G = = MP 6 5 3 10 6 25 47 107 150 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.045 -13.326 -5.779 -3.392 -3.769 -12.508 3.905 -11.629 -12.467 -9.534 -4.184 -11.729 -0.461 -12.880 -5.304 -5.264 ML 7 5 3 10 6 17 37 105 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 37 105 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 33 101 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 38 106 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 106 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 115 A U = = MP 12 11 6 16 6 25 45 105 148 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -6.484 -12.232 3.919 -14.372 -15.527 -3.016 -5.564 -11.792 -1.049 -12.462 -2.581 -9.755 -13.537 -11.661 -3.874 ML 13 11 6 16 6 17 37 103 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 37 103 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 14 33 99 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 38 104 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 38 104 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 114 A U = = MP 18 17 6 22 6 24 43 103 146 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.651 -2.332 -10.534 3.187 -11.781 -11.330 -6.875 -3.409 -10.798 2.550 -11.139 -2.067 -1.304 -3.976 -8.871 -5.388 ML 19 17 6 22 6 16 37 101 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 36 101 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 33 97 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 38 102 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 38 102 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 113 g c = = MP 24 23 6 28 6 22 41 101 144 -15.995 -6.493 -0.016 -14.710 -14.990 -15.385 -1.754 0.994 -2.125 2.662 -4.094 -4.848 -2.715 -10.472 -10.220 2.693 -10.466 -1.704 -4.787 -4.410 -4.945 -5.806 ML 25 23 6 28 6 16 36 99 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 36 99 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 32 95 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 100 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 19 40 100 143 -5.548 -0.048 -9.060 -7.227 -8.333 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 111 a u = = MP 30 29 6 34 6 20 39 99 142 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.340 -1.358 -9.782 2.903 -5.302 -6.658 -2.209 -5.589 -10.220 2.844 -10.466 -1.524 -2.758 -5.194 -7.986 -4.294 ML 31 29 6 34 6 16 35 97 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 35 97 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 32 94 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 98 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 98 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 110 u a = = MP 36 35 6 40 6 18 37 97 140 -6.603 -6.359 -0.033 -14.710 -14.990 -15.385 -3.164 -6.463 -10.257 0.231 -0.172 -11.101 2.327 -9.794 -3.700 -3.181 -10.636 -5.917 2.950 -3.621 -0.437 -4.543 ML 37 35 6 40 6 15 35 95 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 34 95 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 32 92 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 17 36 96 139 -6.273 -6.535 -0.046 -8.191 -8.967 -8.627 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 36 96 139 -5.669 -0.045 -9.180 -7.347 -8.453 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 108 G C = = MP 42 41 6 46 4 16 35 95 138 -15.218 -4.559 -0.065 -9.088 -5.459 -6.172 -11.492 2.319 -12.868 -12.123 -7.972 -11.907 -11.340 3.416 -11.744 -3.149 -2.890 -4.635 -9.971 -10.318 ML 43 41 6 46 4 15 34 94 137 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 33 93 136 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 31 92 135 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 34 95 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 34 94 137 -6.310 -0.021 -9.010 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 14 33 93 136 -16.125 -0.000 -14.779 -5.946 -5.484 -6.345 1.982 D 49 47 6 50 3 12 31 91 134 -8.682 -4.195 -0.085 IL 50 50 3 50 3 14 33 93 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 13 32 92 135 -16.780 -0.000 1.850 -6.054 -1.397 -10.625 D 52 50 3 53 2 12 31 91 134 -8.805 -0.003 IL 53 53 3 53 2 13 32 92 135 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 31 91 134 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 52 75 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 52 75 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 34 57 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 11 31 G C = = MP 58 57 1 62 6 2 3 34 57 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.963 -3.928 -16.470 -2.156 -15.576 -2.701 -9.854 -15.844 -11.922 3.925 -12.110 -1.441 -10.223 -12.174 -12.312 -15.666 ML 59 57 1 62 6 1 1 32 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 32 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 29 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 33 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 33 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 C G = = MP 64 63 6 68 6 2 3 32 55 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -3.069 -12.364 -9.565 -10.714 -12.508 3.917 -3.971 -12.468 -9.537 -12.588 -11.733 -0.971 -12.881 -2.323 -11.270 ML 65 63 6 68 6 1 1 30 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 30 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 31 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 31 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 29 U A = = MP 70 69 6 74 6 2 3 30 53 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.328 -12.364 -2.683 -3.142 -12.508 -2.378 -11.630 -2.446 -9.536 -12.588 -11.731 3.938 -12.881 -5.177 -11.270 ML 71 69 6 74 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 28 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 29 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 29 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 28 U A = = MP 76 75 6 80 4 2 3 28 51 -15.218 -15.425 -0.000 -13.839 2.258 -1.705 -3.039 -0.493 -2.729 -5.551 -3.620 -11.628 0.474 -9.514 -12.585 -11.687 3.030 -12.877 -4.613 -2.171 ML 77 75 6 80 4 1 1 28 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 27 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 26 49 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 29 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 28 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 26 49 -16.127 -0.000 -14.781 1.800 -3.922 -6.185 -1.190 D 83 81 6 84 3 0 0 24 47 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 25 48 -16.127 -0.309 -2.376 1.569 -3.077 -0.382 -2.754 D 86 84 3 87 3 0 0 23 46 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - + - ML 88 87 3 90 3 1 1 24 47 -15.818 -1.061 -0.942 1.095 -0.146 -3.431 -0.206 D 89 87 3 90 3 0 0 22 45 -15.173 -10.686 -0.001 IL 90 90 3 90 3 1 1 26 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 23 47 -3.021 -0.395 -3.106 -1.812 0.629 -8.075 1.114 D 92 90 3 93 3 0 0 22 45 -16.841 -0.399 -2.048 IL 93 93 3 93 3 1 1 24 47 -1.442 -1.070 -2.685 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - A - + - ML 94 93 3 96 3 1 1 22 45 -15.796 -0.020 -6.184 1.717 -1.172 -2.799 -2.993 D 95 93 3 96 3 0 0 21 44 -15.261 -0.571 -1.613 IL 96 96 3 96 3 1 1 23 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - g - + - ML 97 96 3 99 3 1 1 21 44 -16.010 -0.807 -1.223 -0.435 0.085 0.557 -0.458 D 98 96 3 99 3 0 0 19 42 -13.868 -6.208 -0.020 IL 99 99 3 99 3 1 1 23 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - u - + - ML 100 99 3 102 3 1 1 20 44 -2.656 -0.249 -13.860 0.340 -0.002 -8.437 0.793 D 101 99 3 102 3 0 0 18 42 -3.785 -0.110 -10.855 IL 102 102 3 102 3 1 1 22 45 -1.147 -0.868 -11.316 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.850 -2.635 -9.541 -2.106 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - A - + - ML 109 108 2 111 5 1 1 26 45 -6.479 -0.016 -14.876 -15.088 -15.980 1.874 -3.644 -2.082 -5.703 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -5.554 -0.048 -7.233 -9.065 -8.339 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 50 U A = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.192 -10.038 -5.174 -2.170 1.157 -5.938 1.068 -2.255 -3.587 -2.962 -10.700 -7.607 3.428 -6.461 -3.455 -8.910 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 49 C G = = MP 118 117 6 122 6 2 2 23 42 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.043 -13.322 -12.362 -3.366 -6.897 -12.507 3.429 -5.365 -12.465 -9.527 -4.247 -11.721 2.319 -12.878 -4.307 -11.266 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 48 U A = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.533 -13.328 -12.364 -9.564 -1.486 -12.508 2.086 -11.630 -12.467 -9.536 -12.587 -11.731 3.477 -4.209 -4.430 -3.847 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 47 c g = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.129 -2.905 -10.028 2.562 -9.766 -10.725 2.660 -10.100 -10.189 1.474 -10.570 -3.606 -0.550 -6.553 -5.751 -3.929 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 46 G C = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -9.977 -0.266 -9.796 0.396 -3.381 1.383 -3.839 0.927 -10.232 3.119 -10.479 -2.452 -6.260 -4.612 -8.002 -2.021 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -12.339 1.711 -13.091 -0.461 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -12.071 -1.539 -13.042 1.870 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -5.518 -5.848 -10.354 1.986 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 -12.733 2.000 -13.620 -11.110 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.939 -11.038 -2.901 -4.942 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -1.967 1.894 -10.593 -5.249 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 57 100 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 3 59 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 2 57 100 -16.127 -0.003 -9.016 1.862 -2.616 -3.656 -3.041 D 167 165 2 168 3 0 1 56 99 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 58 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - G - + - ML 169 168 3 171 2 1 1 56 99 -16.780 -0.000 -1.361 -2.893 1.771 -4.013 D 170 168 3 171 2 0 0 55 98 -8.827 -0.003 IL 171 171 3 171 2 1 1 57 100 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 55 98 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 44 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 53 70 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 69 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 68 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 67 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 66 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 65 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 11 30 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 64 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 29 -15.431 -15.112 -4.555 -0.063 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - A - + - ML 216 215 6 218 3 1 1 13 32 -11.624 -0.002 -10.278 1.993 -7.755 -7.041 -7.184 D 217 215 6 218 3 0 0 7 26 -17.481 -12.994 -0.000 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.624 -0.002 -10.278 -7.620 -6.861 -8.610 1.994 D 220 218 3 221 3 0 0 6 25 -17.481 -12.994 -0.000 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.624 -4.727 -0.056 -7.620 -6.861 -8.610 1.994 D 223 221 3 224 3 0 0 5 24 -17.481 -12.994 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 51 94 -16.127 -0.021 -6.148 IL 230 230 2 230 3 1 1 52 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - A - + - ML 231 230 2 233 3 1 2 51 94 -6.945 -0.012 -14.761 1.762 -9.292 -4.310 -0.848 D 232 230 2 233 3 0 0 50 94 -0.038 -6.945 -5.824 IL 233 233 3 233 3 1 1 51 94 -5.412 -0.040 -8.112 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - U - + - ML 234 233 3 236 5 1 2 50 93 -15.061 -0.018 -14.876 -6.324 -15.980 -3.887 0.644 -5.977 1.235 D 235 233 3 236 5 0 0 48 91 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 50 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 74 106 A U = = MP 237 236 3 241 6 2 2 49 92 -15.977 -6.455 -0.017 -14.692 -14.972 -15.367 -5.210 -4.068 -9.698 3.014 -5.249 -5.454 -1.346 -2.286 -10.108 1.709 -10.378 -1.408 0.970 0.623 -5.304 -6.200 ML 238 236 3 241 6 1 1 46 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 48 91 -11.154 -9.883 -5.792 -9.861 -0.036 -8.075 -5.290 1.967 -5.784 -4.390 D 240 236 3 241 6 0 0 44 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 48 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 48 91 -5.566 -0.048 -9.078 -7.245 -8.351 0.000 0.000 0.000 0.000 [ MATP 64 ] 75 104 U A = = MP 243 242 6 247 6 2 2 46 90 -15.977 -15.916 -0.011 -7.300 -9.350 -15.367 -13.021 -3.909 -12.342 -9.531 -1.072 -2.931 2.388 -1.830 -12.445 -9.500 -12.566 -11.693 3.169 -4.229 -0.400 -11.246 ML 244 242 6 247 6 1 1 44 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 47 90 -11.154 -9.883 -5.792 -9.861 -0.036 -8.075 1.976 -5.833 -5.247 -5.482 D 246 242 6 247 6 0 0 42 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 46 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 46 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 76 103 C G = = MP 249 248 6 253 6 2 2 44 88 -6.577 -3.884 -0.181 -14.681 -5.060 -6.675 -13.000 -13.272 -3.536 0.050 -0.757 -12.474 3.566 -11.593 -12.427 -9.465 -12.550 -11.654 1.132 -12.839 -2.016 -11.227 ML 250 248 6 253 6 1 1 39 83 -9.684 -10.030 -2.335 -0.335 -9.880 -7.409 -4.250 1.931 -4.896 -3.322 MR 251 248 6 253 6 1 1 46 89 -11.308 -10.037 -5.946 -10.016 -0.032 -8.229 -3.612 -4.713 1.823 -1.545 D 252 248 6 253 6 0 0 40 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 39 82 -6.269 -6.532 -4.450 -0.111 -8.963 -8.624 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 46 89 -2.488 -2.171 -11.776 -0.739 -11.049 0.000 0.000 0.000 0.000 [ MATP 66 ] 78 100 c g = = MP 255 254 6 259 6 2 2 42 85 -15.815 -15.754 -0.332 -8.932 -4.643 -2.611 -3.638 -3.172 -7.437 2.021 -2.650 -3.991 2.902 -4.340 -4.467 -2.140 -8.070 -3.833 1.632 -4.277 -1.216 -3.852 ML 256 254 6 259 6 1 1 35 78 -10.905 -11.251 -5.965 -0.029 -11.101 -8.630 1.981 -6.203 -5.596 -5.811 MR 257 254 6 259 6 1 1 45 88 -13.980 -12.709 -8.617 -12.687 -0.167 -3.235 1.401 -5.823 -0.510 -0.647 D 258 254 6 259 6 0 0 37 80 -13.383 -12.082 -7.879 -8.561 -8.578 -0.014 IL 259 259 5 259 6 1 1 41 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 42 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 79 99 G C = = MP 261 260 6 265 4 2 2 39 82 -14.702 -5.037 -0.124 -4.266 -1.305 -0.494 -9.275 1.446 -0.439 -5.104 -0.662 -9.962 -9.712 3.300 -9.959 -5.735 -0.208 -9.130 -5.578 -8.240 ML 262 260 6 265 4 1 1 34 77 -8.157 -8.339 -0.665 -1.462 -1.968 1.821 -3.124 -3.386 MR 263 260 6 265 4 1 1 45 88 -12.353 -1.035 -3.366 -1.270 -0.682 1.474 -1.319 -2.341 D 264 260 6 265 4 0 0 37 80 -12.835 -5.222 -1.913 -0.499 IL 265 265 5 265 4 1 1 44 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 45 88 -0.616 -2.017 -3.316 0.000 0.000 0.000 0.000 [ MATL 68 ] 80 - U - + - ML 267 266 6 269 3 1 1 28 55 -4.084 -0.095 -7.680 -1.248 -0.639 -5.359 1.542 D 268 266 6 269 3 0 0 26 54 -15.444 -0.623 -1.513 IL 269 269 3 269 3 1 1 28 56 -2.276 -0.336 -9.417 0.000 0.000 0.000 0.000 [ MATL 69 ] 83 - g - + - ML 270 269 3 272 3 1 1 27 54 -15.999 -0.023 -5.956 -0.659 -1.921 0.929 0.261 D 271 269 3 272 3 0 0 26 53 -13.998 -0.200 -2.948 IL 272 272 3 272 3 1 1 28 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 84 - C - + - ML 273 272 3 275 3 1 1 26 53 -16.090 -0.001 -10.113 -0.418 1.557 -5.280 -1.818 D 274 272 3 275 3 0 0 24 52 -12.275 -0.774 -1.268 IL 275 275 3 275 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 85 - A - + - ML 276 275 3 278 3 1 1 25 52 -5.571 -0.117 -4.132 1.543 -1.036 -2.945 -1.093 D 277 275 3 278 3 0 0 23 50 -11.131 -1.128 -0.884 IL 278 278 3 278 3 1 1 25 52 -5.332 -0.042 -8.032 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 24 51 -16.034 -0.131 -3.531 1.749 -1.715 -5.236 -1.696 D 280 278 3 281 3 0 0 19 46 -13.554 -4.097 -0.087 IL 281 281 3 281 3 1 1 25 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - A - + - ML 282 281 3 284 3 1 1 23 50 -3.472 -0.238 -4.014 1.235 -0.146 -1.372 -1.487 D 283 281 3 284 3 0 0 10 38 -14.713 -5.664 -0.029 IL 284 284 3 284 3 1 1 26 53 -0.966 -1.148 -4.760 0.000 0.000 0.000 0.000 [ MATL 74 ] 93 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.267 0.366 -6.017 1.189 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Val-2nd-align LENG 90 MAXL 162 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:14:01 2015 COM [1] cmbuild --hand --enone Val-final-vert.cm ../Val-2nd-align.sto NSEQ 1085 EFFN 13.720608 CKSUM 2820005377 STATS LOCAL MSV -8.7718 0.71857 STATS LOCAL VITERBI -9.5549 0.71857 STATS LOCAL FORWARD -3.8327 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16072 1.41219 1.59385 1.42717 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 0.00000 * 1 4.13288 0.10186 4.07985 2.75049 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 2 0.05100 4.89167 3.35521 4.91895 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 3 0.88156 2.94750 0.77769 2.60468 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 4 0.93376 2.70841 0.76326 2.60179 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 5 1.00339 2.83340 0.67563 2.72239 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 6 2.01272 1.11045 2.20961 0.85045 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02188 4.18216 5.05553 0.69441 0.69189 1.09861 0.40547 7 1.31207 3.11290 0.46483 2.84689 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01437 5.05553 4.84116 1.46634 0.26236 1.09861 0.40547 8 3.56520 3.43440 4.03703 0.08141 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.01285 5.05401 5.05401 1.46634 0.26236 1.17529 0.36922 9 0.14538 4.02219 2.30067 4.06271 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.01285 5.05401 5.05401 1.46634 0.26236 0.96092 0.48214 10 3.39613 4.22078 0.05892 4.70785 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 11 4.08118 0.10477 4.21416 2.69126 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 12 5.37950 4.31974 5.32681 0.02304 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 13 1.24996 1.91585 1.78747 0.91908 14 u = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 14 0.19843 3.16155 3.56612 2.21317 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 15 0.37136 2.86752 1.72109 2.59702 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.19680 5.05553 1.75868 1.46634 0.26236 1.09861 0.40547 16 0.78049 1.53829 2.50529 1.40479 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.59651 4.87414 0.81729 1.46634 0.26236 3.36824 0.03506 17 1.92823 1.12284 2.72650 0.76832 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.21588 2.31532 2.34932 0.48128 0.96232 0.29624 1.36104 18 0.28405 2.18290 2.79976 2.60732 21 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03959 4.87379 3.46818 1.46634 0.26236 0.39185 1.12642 19 1.47656 1.44552 1.18147 1.47347 22 g + - _ 1.38629 1.38629 1.38629 1.38629 0.45694 4.98624 1.02178 1.46634 0.26236 1.19730 0.35955 20 1.21865 1.42998 2.52281 0.95497 23 u + - _ 1.38629 1.38629 1.38629 1.38629 0.18207 1.85641 4.58263 0.59941 0.79659 0.03273 3.43587 21 0.16298 2.88529 3.75814 2.64187 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 22 0.64673 2.12517 1.71425 1.73312 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 23 0.02485 5.84393 4.17336 5.07602 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 24 2.98089 4.05230 0.09023 4.00903 30 G = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 25 4.78451 0.07545 4.59269 2.91528 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 26 0.14379 3.32510 2.66494 3.56272 32 A + - , 1.38629 1.38629 1.38629 1.38629 0.02264 4.13461 5.05553 0.66636 0.72067 1.09861 0.40547 27 2.30216 1.24255 2.23232 0.68512 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 28 3.44147 0.49280 3.27436 1.14185 35 C = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 29 2.88294 1.17635 2.68872 0.56623 36 U = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 30 1.24441 1.10063 1.44763 1.93724 37 c = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 31 1.75670 1.53666 0.63837 2.47535 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 32 3.86122 0.23703 4.52497 1.71949 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 33 3.84059 2.40783 4.35179 0.13282 40 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 34 3.75332 3.67038 4.44376 0.06258 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 35 0.01646 5.44492 5.03782 5.20015 42 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 36 5.06572 0.02282 5.40680 4.44229 43 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 37 0.07496 4.32452 3.22271 3.95623 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 38 2.88762 0.10003 4.61678 3.52025 45 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 39 2.79503 0.49391 2.54979 1.38409 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 40 2.14762 1.51842 1.03741 1.17181 47 g = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 41 0.58975 2.83290 1.14773 2.66883 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 42 1.20294 3.52000 0.46317 3.19888 49 G = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 43 0.59921 2.41655 1.42609 2.10965 50 A = - > 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 44 0.16161 2.86733 3.24523 2.92956 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.01449 5.05553 4.82740 1.46634 0.26236 1.09861 0.40547 45 2.12366 3.00505 0.24443 3.04241 52 G + - , 1.38629 1.38629 1.38629 1.38629 2.05817 5.05390 0.14395 1.46634 0.26236 1.18058 0.36687 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 47 1.80282 1.30599 1.07736 1.49715 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 48 1.80035 1.30675 1.07828 1.49665 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 49 1.79922 1.30709 1.07870 1.49642 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 50 1.79875 1.30724 1.07888 1.49633 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 51 1.79861 1.30728 1.07893 1.49630 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 52 1.79863 1.30728 1.07892 1.49630 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.02034 0.05001 53 0.51824 2.20137 2.02175 1.82412 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07487 3.32240 3.32240 1.46634 0.26236 4.88402 0.00760 54 1.68216 1.83661 2.13059 0.62380 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07487 3.32240 3.32240 1.46634 0.26236 4.88402 0.00760 55 1.68216 1.83661 2.13059 0.62380 62 U + - _ 1.38629 1.38629 1.38629 1.38629 0.32667 3.32240 1.41630 1.46634 0.26236 4.88402 0.00760 56 1.13112 1.65303 1.51838 1.32128 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 57 1.72992 1.22035 1.16223 1.53811 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 58 1.72986 1.22037 1.16225 1.53810 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 59 1.72990 1.22036 1.16223 1.53811 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 60 1.73010 1.22027 1.16216 1.53817 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 61 1.73059 1.22006 1.16198 1.53831 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 62 1.73159 1.21963 1.16162 1.53861 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.92644 0.00728 63 1.73350 1.21882 1.16092 1.53917 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01461 4.23330 64 0.21654 3.48517 3.30698 2.06021 71 A + - , 1.38629 1.38629 1.38629 1.38629 0.01982 4.32337 5.05553 0.78426 0.60965 1.09861 0.40547 65 2.85600 1.01803 3.60229 0.59071 73 U + - , 1.38629 1.38629 1.38629 1.38629 0.02376 5.05553 4.06830 1.46634 0.26236 1.09861 0.40547 66 1.03379 2.06111 1.27264 1.43995 74 a = - < 1.38629 1.38629 1.38629 1.38629 0.01297 5.04474 5.04474 1.46634 0.26236 1.54411 0.24017 67 2.44411 1.06850 2.32491 0.75103 75 u = - < 1.38629 1.38629 1.38629 1.38629 0.01428 5.04474 4.86136 1.46634 0.26236 1.54411 0.24017 68 2.33393 0.47807 2.68883 1.53645 76 C = - < 1.38629 1.38629 1.38629 1.38629 0.10426 4.17160 2.48193 0.69532 0.69098 1.58618 0.22904 69 1.44764 1.02153 2.02514 1.29882 78 c = - < 1.38629 1.38629 1.38629 1.38629 0.20411 4.96318 1.72801 1.46634 0.26236 2.82379 0.06122 70 1.48996 2.10010 0.63887 2.08519 79 G = - < 1.38629 1.38629 1.38629 1.38629 0.08541 4.77607 2.61141 1.46634 0.26236 0.97694 0.47235 71 2.05117 1.79969 3.14493 0.41099 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07111 2.87041 4.42605 0.42444 1.06171 0.47409 0.97405 72 1.57893 2.23035 0.92314 1.24119 83 g + - _ 1.38629 1.38629 1.38629 1.38629 0.02781 4.97940 3.88511 1.46634 0.26236 0.27282 1.43226 73 1.72975 0.41800 3.48237 2.01308 84 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01387 5.03330 4.92528 1.46634 0.26236 0.75514 0.63477 74 0.42271 2.03389 2.71945 1.91057 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08334 3.70879 2.89214 0.46183 0.99461 0.97555 0.47318 75 0.24703 2.43107 3.35528 2.34296 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09131 5.00024 2.51912 1.46634 0.26236 2.04489 0.13857 76 0.67629 1.57650 2.09151 1.82448 88 A + - _ 1.38629 1.38629 1.38629 1.38629 0.14705 2.55850 2.82468 0.81892 0.58144 2.36055 0.09912 77 1.97572 1.19549 3.09006 0.66693 93 U + - _ 1.38629 1.38629 1.38629 1.38629 0.22078 2.42035 2.21443 1.10025 0.40465 0.59601 0.80075 78 1.98024 0.66921 2.11681 1.47214 99 C = - > 1.38629 1.38629 1.38629 1.38629 0.01516 4.88961 4.88961 1.46634 0.26236 0.22265 1.61142 79 1.42508 2.15065 0.94291 1.37196 100 g = - > 1.38629 1.38629 1.38629 1.38629 0.07550 2.72985 4.89399 0.34447 1.23305 0.54845 0.86238 80 1.58732 2.86596 0.46052 2.22891 103 G = - > 1.38629 1.38629 1.38629 1.38629 0.01290 5.05013 5.05013 1.46634 0.26236 0.73397 0.65392 81 0.84034 2.40130 1.00827 2.18050 104 a = - > 1.38629 1.38629 1.38629 1.38629 0.02273 4.12866 5.05553 0.66293 0.72431 1.09861 0.40547 82 1.79656 1.22183 1.92686 0.93182 106 u = - > 1.38629 1.38629 1.38629 1.38629 0.05050 3.14943 5.05553 0.27468 1.42633 1.09861 0.40547 83 3.09529 0.51025 2.91963 1.20252 108 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02356 4.07995 5.05553 0.63542 0.75441 1.09861 0.40547 84 0.90768 2.37225 1.04218 1.89323 110 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 85 2.92882 0.72457 2.69265 0.93063 111 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02260 4.13715 5.05553 0.66784 0.71911 1.09861 0.40547 86 2.70690 0.69663 2.46531 1.04978 113 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 87 2.86041 0.83564 2.81868 0.79968 114 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 88 5.41687 3.71697 4.86072 0.03718 115 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 89 2.88844 4.37094 0.09160 3.95161 116 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01283 5.05553 5.05553 1.46634 0.26236 1.09861 0.40547 90 0.07096 3.73089 4.16717 3.53918 117 A + - : 1.38629 1.38629 1.38629 1.38629 0.00644 5.04914 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Val.cm0000644000543100007160000017236212573631164021420 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Val STATES 289 NODES 76 CLEN 90 W 108 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:43 2015 COM [1] cmbuild --hand --enone Val_model.cm aligntRNAdb-Val.sto COM [2] cmcalibrate --seed 208 Val_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 323905291 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4331 0.71867 ECMLC 0.68910 -6.75153 2.25343 1600000 594451 0.002019 ECMGC 0.32826 -44.03408 -29.18161 1600000 52411 0.007632 ECMLI 0.67102 -6.59826 2.58316 1600000 568658 0.002110 ECMGI 0.34978 -38.28803 -24.52365 1600000 49315 0.008111 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 108 151 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 35 109 152 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 37 110 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 113 - A - + MR 3 2 3 5 5 20 44 108 151 -13.126 -0.001 -12.941 -13.153 -14.045 1.999 -10.184 -9.419 -9.524 D 4 2 3 5 5 12 32 107 149 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 35 108 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 112 C G = = MP 6 5 3 10 6 21 43 107 150 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 7 5 3 10 6 13 33 105 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 33 105 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 30 102 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 35 106 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 14 35 106 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 111 A U = = MP 12 11 6 16 6 21 41 105 148 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -4.043 -10.294 3.953 -12.431 -13.588 -7.890 -3.414 -9.854 -1.615 -10.524 -6.045 -7.816 -11.599 -9.721 -8.892 ML 13 11 6 16 6 13 33 103 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 33 103 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 29 100 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 34 104 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 35 104 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 110 A U = = MP 18 17 6 22 6 20 39 103 146 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.098 -2.216 -10.293 3.657 -12.429 -13.581 -7.887 -1.995 -9.854 -0.912 -10.523 -1.651 0.724 -1.283 -9.718 -8.892 ML 19 17 6 22 6 13 33 101 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 33 101 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 29 98 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 34 102 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 34 102 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 109 A U = = MP 24 23 6 28 6 19 37 101 144 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.953 -3.631 -1.505 3.342 -12.012 -3.387 -7.346 -10.225 -9.761 2.388 -10.383 -3.675 -7.379 -11.029 -9.236 -8.747 ML 25 23 6 28 6 13 32 99 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 32 99 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 29 96 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 34 101 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 34 100 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 108 G C = = MP 30 29 6 34 6 17 36 99 142 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.218 -5.028 -10.448 2.895 -12.512 -12.269 -7.875 -10.489 -9.867 3.061 -10.478 -2.569 -7.846 -11.349 -9.764 -9.052 ML 31 29 6 34 6 12 32 97 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 31 97 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 29 94 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 33 99 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 33 98 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 107 U A = = MP 36 35 6 40 6 15 34 97 140 -14.078 -6.193 -0.020 -12.794 -13.073 -13.468 -0.402 -3.747 -9.278 -5.108 0.098 -9.893 1.052 -8.723 -2.183 -3.226 -9.607 -6.888 3.459 -4.329 -0.724 -7.939 ML 37 35 6 40 6 12 31 96 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 30 95 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 28 93 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 32 97 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 32 96 139 -4.233 -0.124 -7.744 -5.911 -7.017 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 105 G C = = MP 42 41 6 46 4 13 32 95 138 -13.280 -5.149 -0.042 -11.901 -10.793 -8.692 -11.262 2.127 -12.935 -10.643 -7.910 -11.262 -9.930 3.523 -10.343 -3.048 -8.045 -10.753 -10.026 -9.887 ML 43 41 6 46 4 11 30 94 137 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 29 94 136 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 28 92 135 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 31 95 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 31 94 137 -3.997 -0.108 -6.697 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 29 93 136 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 9 28 92 134 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 30 94 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 10 28 92 135 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 9 27 91 134 -8.445 -0.004 IL 53 53 3 53 2 10 29 93 135 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 27 91 134 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 57 89 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 57 89 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 39 70 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 31 G C = = MP 58 57 1 62 6 2 3 39 70 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.975 -8.637 -14.144 -6.098 -13.625 -9.811 -7.938 -13.665 -10.003 3.952 -10.200 -1.007 -8.297 -10.274 -10.381 -13.159 ML 59 57 1 62 6 1 1 38 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 38 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 35 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 39 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 39 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 30 C G = = MP 64 63 6 68 6 2 3 37 68 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 65 63 6 68 6 1 1 36 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 36 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 33 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 37 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 37 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 29 U A = = MP 70 69 6 74 6 2 3 35 66 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 71 69 6 74 6 1 1 34 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 34 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 32 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 35 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 35 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 28 U A = = MP 76 75 6 80 4 2 3 33 64 -13.280 -13.487 -0.001 -11.901 -11.104 -11.363 -10.426 -7.602 -0.932 -10.576 -4.494 -9.694 -10.527 -7.581 -10.650 -9.729 3.945 -10.945 -6.485 -9.330 ML 77 75 6 80 4 1 1 33 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 32 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 31 62 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 34 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 33 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 31 62 -14.190 -0.000 -12.844 1.988 -10.069 -5.048 -9.471 D 83 81 6 84 3 0 0 30 61 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 30 61 -14.190 -0.571 -1.613 1.932 -4.233 -5.336 -3.237 D 86 84 3 87 3 0 0 29 60 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - a - + - ML 88 87 3 90 3 1 1 30 61 -13.620 -1.947 -0.433 0.887 0.334 -6.567 -0.186 D 89 87 3 90 3 0 0 28 59 -14.001 -9.514 -0.002 IL 90 90 3 90 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 30 61 -2.292 -1.861 -0.942 -1.490 0.009 -4.958 1.382 D 92 90 3 93 3 0 0 28 59 -15.334 -0.441 -1.926 IL 93 93 3 93 3 1 1 32 63 -1.029 -0.984 -7.885 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 28 59 -13.660 -0.000 -12.314 1.275 -0.864 -0.619 -1.398 D 95 93 3 96 3 0 0 27 58 -13.914 -0.509 -1.750 IL 96 96 3 96 3 1 1 29 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - c - + - ML 97 96 3 99 3 1 1 27 58 -14.053 -1.660 -0.549 0.286 0.798 -7.163 0.049 D 98 96 3 99 3 0 0 23 54 -12.172 -7.685 -0.007 IL 99 99 3 99 3 1 1 30 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 28 59 -1.465 -0.650 -11.047 -6.805 0.798 -7.815 1.168 D 101 99 3 102 3 0 0 22 53 -5.444 -0.036 -9.514 IL 102 102 3 102 3 1 1 29 60 -0.857 -1.162 -9.732 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - A - + - ML 109 108 2 111 5 1 1 27 46 -6.204 -0.020 -12.941 -13.153 -14.045 1.791 -4.967 -1.061 -5.117 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -4.203 -0.126 -5.882 -7.714 -6.988 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 50 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -4.401 -11.390 -1.719 -7.626 1.002 -10.571 1.261 -9.692 -10.530 -7.597 -10.650 -9.792 3.485 -10.943 -4.702 -9.331 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 49 C G = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.819 -9.692 -10.530 -7.599 -3.057 -9.795 0.750 -10.943 -3.865 -9.332 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 48 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -0.808 -11.390 -10.426 -7.626 -0.233 -10.571 0.743 -9.692 -10.530 -7.597 -10.650 -9.793 3.665 -2.749 -4.265 -9.332 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 47 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.275 -0.833 -10.497 2.557 -12.140 -10.826 -7.258 -10.666 -9.786 3.174 -10.249 -1.301 -7.397 -3.256 -9.271 -9.194 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 46 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.044 -4.477 -14.535 -0.279 -13.658 -1.747 -7.938 -13.917 -10.006 3.889 -10.195 -6.574 -8.307 -10.259 -10.395 -13.722 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.047 1.307 -11.211 0.608 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.544 0.189 -10.451 1.515 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -9.998 -5.080 -10.940 1.989 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.941 -9.679 -2.665 -9.272 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -9.350 1.988 -9.760 -5.068 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 57 100 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 4 59 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 4 57 100 -14.190 -0.000 -12.844 1.908 -9.439 -2.035 -9.147 D 167 165 2 168 3 0 2 56 99 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 58 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - G - + - ML 169 168 3 171 2 1 3 56 99 -14.843 -0.000 -2.816 -10.465 1.947 -9.458 D 170 168 3 171 2 0 2 55 98 -8.445 -0.004 IL 171 171 3 171 2 1 3 57 100 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 55 98 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 43 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 53 71 g c = = MP 174 173 1 178 6 2 2 29 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 70 g c = = MP 180 179 6 184 6 2 2 27 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 26 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 69 g c = = MP 186 185 6 190 6 2 2 25 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 68 g c = = MP 192 191 6 196 6 2 2 23 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 67 g c = = MP 198 197 6 202 6 2 2 21 38 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 20 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 20 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 21 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 21 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 66 g c = = MP 204 203 6 208 6 2 2 19 36 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 18 35 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 18 35 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 19 36 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 19 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 65 g c = = MP 210 209 6 214 4 2 2 17 34 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 17 34 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 17 33 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -13.489 -4.998 -3.494 -0.185 IL 214 214 5 214 4 1 1 18 35 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 15 33 -4.119 -0.099 -6.819 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.196 -0.002 -9.851 1.991 -7.312 -6.626 -6.785 D 217 215 6 218 3 0 0 9 27 -15.418 -10.931 -0.001 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - U - + - ML 219 218 3 221 3 1 1 12 31 -11.196 -0.002 -9.851 -4.823 -0.957 -5.566 1.778 D 220 218 3 221 3 0 0 8 26 -15.418 -10.931 -0.001 IL 221 221 3 221 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.196 -1.422 -0.675 -4.840 -0.531 -5.600 1.702 D 223 221 3 224 3 0 0 7 25 -15.418 -10.931 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - C - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.152 1.353 -3.458 -2.031 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 47 90 -14.190 -0.080 -4.217 IL 230 230 2 230 3 1 3 49 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 72 - A - + - ML 231 230 2 233 3 1 3 47 90 -4.489 -0.066 -12.765 1.948 -9.509 -9.205 -2.852 D 232 230 2 233 3 0 1 46 89 -11.427 -0.026 -5.819 IL 233 233 3 233 3 1 2 48 91 -1.683 -0.549 -7.670 0.000 0.000 0.000 0.000 [ MATL 62 ] 75 - U - + - ML 234 233 3 236 5 1 3 46 89 -13.126 -0.053 -12.941 -4.808 -14.045 -3.622 -0.296 -7.736 1.632 D 235 233 3 236 5 0 0 45 88 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 47 89 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 76 103 u a = = MP 237 236 3 241 6 2 4 45 88 -14.026 -5.543 -0.032 -12.742 -13.022 -13.417 -0.986 -3.762 -7.131 0.508 -0.478 -4.646 -0.196 -1.418 -7.123 -2.568 -7.673 -3.015 2.600 2.456 -3.074 -6.124 ML 238 236 3 241 6 1 1 43 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 46 89 -10.761 -9.490 -5.399 -9.468 -0.047 -7.682 -4.876 1.955 -5.420 -3.961 D 240 236 3 241 6 0 0 41 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 45 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 44 87 -4.687 -0.089 -8.198 -6.366 -7.472 0.000 0.000 0.000 0.000 [ MATP 64 ] 77 101 U A = = MP 243 242 6 247 6 2 4 43 86 -14.026 -13.966 -0.010 -12.742 -7.183 -13.417 -8.288 -8.005 -8.295 0.112 -3.248 -1.299 1.692 -4.747 -8.159 -1.208 -8.674 -2.561 3.244 -4.781 0.005 -6.890 ML 244 242 6 247 6 1 1 41 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 45 88 -10.761 -9.490 -5.399 -9.468 -0.047 -7.682 1.966 -5.319 -4.756 -5.013 D 246 242 6 247 6 0 0 39 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 43 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 43 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 78 100 C G = = MP 249 248 6 253 6 2 2 41 84 -5.480 -4.244 -0.308 -12.732 -4.276 -3.941 -11.043 -11.321 -10.362 -0.280 -8.714 -10.508 3.784 -2.049 -10.465 -7.526 -10.586 -9.717 -1.657 -10.878 -0.269 -9.267 ML 250 248 6 253 6 1 1 39 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 44 87 -10.991 -9.720 -5.629 -9.698 -0.040 -7.912 -2.955 -3.969 1.732 -1.045 D 252 248 6 253 6 0 0 37 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 39 82 -5.504 -5.767 -0.080 -7.422 -8.198 -7.859 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 43 86 -5.791 -1.339 -9.303 -0.780 -8.576 0.000 0.000 0.000 0.000 [ MATP 66 ] 80 98 A U = = MP 255 254 6 259 6 2 2 38 81 -13.782 -13.721 -0.934 -6.017 -4.199 -1.298 -2.645 -0.392 -9.990 3.779 -12.113 -13.270 -1.251 -10.032 -4.133 -1.582 -10.221 -1.694 -2.184 -11.292 -9.405 -8.589 ML 256 254 6 259 6 1 1 37 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 43 86 -12.498 -11.227 -7.136 -11.205 -0.493 -1.829 0.532 -3.141 0.402 0.163 D 258 254 6 259 6 0 0 29 72 -14.139 -12.838 -8.635 -9.317 -9.334 -0.008 IL 259 259 5 259 6 1 1 37 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 38 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 81 97 c a = = MP 261 260 6 265 4 2 2 29 71 -12.012 -12.219 -0.477 -1.832 -2.974 0.583 -4.529 1.136 2.072 -0.825 0.744 -4.864 -4.596 1.307 -0.985 -1.955 1.027 -4.668 -2.142 -3.783 ML 262 260 6 265 4 1 1 37 80 -6.040 -6.222 -0.329 -2.511 0.311 -1.016 -0.112 0.422 MR 263 260 6 265 4 1 1 43 86 -10.620 -1.935 -7.516 -0.449 -2.079 1.626 -0.702 -3.982 D 264 260 6 265 4 0 0 27 69 -12.308 -11.989 -1.030 -0.972 IL 265 265 5 265 4 1 1 44 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 45 88 -0.618 -1.532 -8.434 0.000 0.000 0.000 0.000 [ MATL 68 ] 82 - a - + - ML 267 266 6 269 3 1 1 26 52 -3.623 -0.137 -6.754 0.735 -0.673 -2.676 0.634 D 268 266 6 269 3 0 0 25 51 -14.429 -0.440 -1.927 IL 269 269 3 269 3 1 1 26 52 -2.128 -0.384 -7.608 0.000 0.000 0.000 0.000 [ MATL 69 ] 85 - U - + - ML 270 269 3 272 3 1 1 25 51 -14.006 -0.021 -6.149 0.123 -1.331 -2.366 1.214 D 271 269 3 272 3 0 0 24 50 -12.569 -0.012 -6.960 IL 272 272 3 272 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 86 - C - + - ML 273 272 3 275 3 1 1 24 50 -14.172 -0.010 -7.230 -0.721 1.467 -4.026 -0.818 D 274 272 3 275 3 0 0 22 48 -9.420 -4.933 -0.050 IL 275 275 3 275 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 87 - A - + - ML 276 275 3 278 3 1 1 23 49 -5.463 -0.239 -2.946 1.219 -0.505 -1.187 -0.921 D 277 275 3 278 3 0 0 22 48 -9.976 -0.073 -4.368 IL 278 278 3 278 3 1 1 23 49 -3.722 -0.132 -6.422 0.000 0.000 0.000 0.000 [ MATL 72 ] 89 - A - + - ML 279 278 3 281 3 1 1 22 48 -13.994 -0.321 -2.325 1.380 -0.569 -2.864 -0.771 D 280 278 3 281 3 0 0 19 45 -12.650 -2.911 -0.206 IL 281 281 3 281 3 1 1 24 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 90 - a - + - ML 282 281 3 284 3 1 1 21 47 -3.905 -0.585 -1.907 0.741 0.391 -2.416 -0.269 D 283 281 3 284 3 0 0 11 37 -13.803 -9.316 -0.002 IL 284 284 3 284 3 1 1 24 50 -1.022 -0.988 -8.278 0.000 0.000 0.000 0.000 [ MATL 74 ] 93 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.312 -0.158 -3.565 0.831 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Val LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:43 2015 COM [1] cmbuild --hand --enone Val_model.cm aligntRNAdb-Val.sto NSEQ 282 EFFN 5.503510 CKSUM 323905291 STATS LOCAL MSV -8.6463 0.71867 STATS LOCAL VITERBI -9.8624 0.71867 STATS LOCAL FORWARD -3.7953 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.18837 1.43197 1.55360 1.40667 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 0.00000 * 1 4.35211 0.07565 4.25207 3.08466 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 2 0.08071 4.31847 3.00193 4.23200 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 3 0.93220 1.87636 1.42558 1.54741 3 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 4 1.02990 2.41326 0.79632 2.27840 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 5 1.06917 3.07115 0.58830 2.89920 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 6 1.79091 1.39932 1.79254 0.86776 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 7 1.50793 3.23846 0.36615 3.07886 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 8 3.64366 3.44999 4.18699 0.07590 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 9 0.05052 4.30691 3.94721 4.10537 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 10 3.16477 4.16438 0.07769 4.07549 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 11 4.37288 0.07497 4.26444 3.08880 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 12 4.37569 3.06913 4.26565 0.07589 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 13 4.36119 2.85816 4.24233 0.08830 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 14 0.06485 4.12136 3.60604 3.94212 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 15 0.14758 3.18593 3.17394 2.91818 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.30736 4.40073 1.37695 1.46634 0.26236 1.09861 0.40547 16 0.99225 1.37390 2.25799 1.30350 16 a + - _ 1.38629 1.38629 1.38629 1.38629 0.72242 4.12619 0.69659 1.46634 0.26236 3.11657 0.04532 17 1.49754 1.49089 2.06128 0.85836 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.35465 2.32556 1.60518 0.92104 0.50767 0.33630 1.25319 18 0.78171 1.82488 1.73706 1.58423 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14461 4.14461 1.46634 0.26236 0.42697 1.05695 19 1.25038 1.09110 2.43873 1.23620 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.69859 4.33162 0.71423 1.46634 0.26236 2.13331 0.12607 20 1.79610 1.19422 2.32052 0.83727 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.23184 1.70476 3.68455 0.96090 0.48215 0.04579 3.10645 21 0.05052 4.30691 3.94721 4.10537 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 22 0.09123 4.39384 2.84195 4.10257 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 23 0.08748 4.45040 2.89501 4.08689 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 24 3.35640 4.39762 0.06531 4.13175 30 G = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 25 4.16874 0.11266 3.98408 2.62470 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 26 0.26972 3.05474 2.04197 2.82183 32 A + - , 1.38629 1.38629 1.38629 1.38629 0.03505 3.80894 4.40073 0.88428 0.53275 1.09861 0.40547 27 2.18608 1.20897 2.11103 0.75923 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 28 3.23612 0.32129 2.92422 1.70506 35 C = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 29 1.99974 1.39765 1.97220 0.73752 36 u = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 30 1.28814 2.64351 0.56581 2.46270 37 G = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 31 2.49184 3.32313 0.16350 3.44077 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 32 2.57914 0.64386 3.21367 1.02530 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 33 2.63640 1.38245 3.19420 0.45190 40 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 34 3.44884 3.17280 3.97863 0.09693 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 35 0.05052 4.30691 3.94721 4.10537 42 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 36 4.06809 0.06171 4.55882 3.43391 43 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 37 0.11661 3.71382 2.87691 3.52766 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 38 3.95798 0.07261 4.45490 3.23619 45 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 39 3.65838 0.17662 3.38597 2.28005 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 40 2.75484 0.62417 2.45146 1.15674 47 C = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 41 0.77353 2.11895 1.31205 1.90251 48 a = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 42 1.88339 3.18096 0.27932 2.99415 49 G = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 43 0.73921 2.28533 1.22484 2.06385 50 a = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 44 0.14771 3.57370 2.58955 3.37526 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 45 2.92916 4.22997 0.09402 3.82874 52 G + - , 1.38629 1.38629 1.38629 1.38629 1.40500 4.40073 0.29792 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 47 1.80307 1.30591 1.07726 1.49720 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 48 1.80075 1.30662 1.07813 1.49673 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 49 1.79972 1.30694 1.07851 1.49652 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 50 1.79933 1.30706 1.07866 1.49644 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 51 1.79924 1.30709 1.07869 1.49643 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 52 1.79931 1.30707 1.07867 1.49644 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.04011 0.13928 53 0.48372 2.25492 2.07211 1.87921 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07114 3.37167 3.37167 1.46634 0.26236 4.01427 0.01822 54 1.62784 1.62203 2.10583 0.72483 61 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07114 3.37167 3.37167 1.46634 0.26236 4.01427 0.01822 55 1.61087 1.56144 2.09212 0.76137 62 u + - _ 1.38629 1.38629 1.38629 1.38629 0.26151 3.37167 1.63076 1.46634 0.26236 4.01427 0.01822 56 1.17220 1.36308 1.78936 1.31909 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11097 3.19560 2.74737 1.46634 0.26236 4.09577 0.01678 57 1.73055 1.22008 1.16200 1.53830 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.17644 3.17217 2.12164 1.46634 0.26236 4.10514 0.01663 58 1.73045 1.22012 1.16203 1.53827 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 59 1.73043 1.22013 1.16204 1.53826 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 60 1.73056 1.22008 1.16200 1.53830 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 61 1.73095 1.21991 1.16185 1.53842 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 62 1.73181 1.21954 1.16154 1.53867 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 63 1.73350 1.21882 1.16092 1.53917 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08708 2.48410 64 0.11531 3.55516 3.44370 3.02847 72 A + - , 1.38629 1.38629 1.38629 1.38629 0.05947 3.10186 4.36051 0.69167 0.69463 0.38844 1.13356 65 2.41981 1.65524 3.05604 0.39610 75 U + - , 1.38629 1.38629 1.38629 1.38629 0.05208 4.40073 3.25766 1.46634 0.26236 1.09861 0.40547 66 1.60177 1.53043 1.72456 0.90692 76 u = - < 1.38629 1.38629 1.38629 1.38629 0.02552 4.37417 4.37417 1.46634 0.26236 1.63635 0.21653 67 1.88925 1.29726 1.83056 0.87897 77 u = - < 1.38629 1.38629 1.38629 1.38629 0.03068 4.37417 4.03894 1.46634 0.26236 1.63635 0.21653 68 2.39456 0.45781 2.49320 1.64260 78 C = - < 1.38629 1.38629 1.38629 1.38629 0.16619 3.53276 2.08836 0.71697 0.66988 1.71103 0.19928 69 0.58459 2.25765 1.51283 2.13891 80 A = - < 1.38629 1.38629 1.38629 1.38629 0.43845 4.25122 1.07671 1.46634 0.26236 2.66158 0.07240 70 1.48352 1.34259 1.46338 1.27103 81 u = - < 1.38629 1.38629 1.38629 1.38629 0.21385 3.85600 1.76390 1.46634 0.26236 0.84528 0.56113 71 1.07628 1.66674 2.05937 1.07078 82 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09548 2.69648 3.74581 0.60250 0.79284 0.36102 1.19390 72 1.30654 1.85389 2.16167 0.78201 85 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03749 4.30831 3.75754 1.46634 0.26236 0.21835 1.62883 73 1.70035 0.64327 2.67955 1.49961 86 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02998 4.39168 4.06526 1.46634 0.26236 1.31764 0.31166 74 0.78133 1.71657 1.92036 1.53264 87 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14639 3.54121 2.23304 0.71124 0.67538 0.66431 0.72284 75 0.68676 1.74306 2.22997 1.54046 89 A + - _ 1.38629 1.38629 1.38629 1.38629 0.18408 4.30261 1.86695 1.46634 0.26236 1.67069 0.20840 76 1.04778 1.35663 2.09050 1.31627 90 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29101 2.81583 1.64695 0.87746 0.53758 2.99793 0.05118 77 1.23840 1.52135 2.13722 0.98416 93 u + - _ 1.38629 1.38629 1.38629 1.38629 0.47452 2.82812 1.14352 1.19160 0.36202 0.53436 0.88200 78 1.34859 1.51878 1.29896 1.39191 97 g = - > 1.38629 1.38629 1.38629 1.38629 0.03733 3.99967 3.99967 1.46634 0.26236 0.21555 1.64041 79 2.23723 1.62966 2.04253 0.56643 98 U = - > 1.38629 1.38629 1.38629 1.38629 0.06766 2.94587 4.35294 0.43366 1.04450 0.34809 1.22429 80 2.00732 2.65300 0.38949 2.13867 100 G = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 81 1.02971 1.95477 1.14290 1.70156 101 a = - > 1.38629 1.38629 1.38629 1.38629 0.04081 3.58552 4.40073 0.73019 0.65743 1.09861 0.40547 82 1.22990 1.45179 1.41450 1.46759 103 a = - > 1.38629 1.38629 1.38629 1.38629 0.04621 3.41456 4.40073 0.62959 0.76103 1.09861 0.40547 83 3.31190 0.41464 3.04896 1.36428 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03535 3.79600 4.40073 0.87458 0.53963 1.09861 0.40547 84 0.92119 1.96809 1.26911 1.70842 107 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 85 3.14323 0.65995 2.87672 0.95800 108 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 86 2.53453 0.87881 2.17705 0.93637 109 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 87 1.77418 1.53193 1.70732 0.83723 110 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 88 4.46361 3.29495 4.27490 0.06454 111 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 89 3.38014 4.43988 0.06313 4.17715 112 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 90 0.05052 4.30691 3.94721 4.10537 113 A + - : 1.38629 1.38629 1.38629 1.38629 0.01250 4.38838 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch-SeC.cm0000644000543100007160000017240012714277014020041 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME arch-SeC-050516 STATES 286 NODES 71 CLEN 89 W 104 ALPH RNA RF yes CONS yes MAP yes DATE Thu May 5 11:04:41 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-SeC-050516.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-SeC.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13 EFFN 13.000000 CKSUM 842893808 NULL 0.000 0.000 0.000 0.000 EFP7GF -6.9737 0.71887 ECMLC 0.57760 -8.28035 2.96458 1600000 794281 0.001511 ECMGC 0.31808 -46.10437 -30.03685 1600000 66317 0.006032 ECMLI 0.54908 -8.38145 3.39493 1600000 771585 0.001555 ECMGI 0.32927 -40.14350 -25.03104 1600000 57961 0.006901 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 104 123 -8.823 -10.069 -0.020 -6.522 IL 1 1 2 1 4 12 44 106 125 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 46 106 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 92 - G - + MR 3 2 3 5 5 16 50 104 123 -8.920 -0.011 -8.736 -8.948 -9.839 -4.645 -6.240 1.972 -5.380 D 4 2 3 5 5 8 39 103 122 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 12 44 105 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 91 G C = = MP 6 5 3 10 6 16 50 103 122 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 7 5 3 10 6 10 41 102 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 10 41 102 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 6 37 99 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 11 43 103 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 11 43 103 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 90 G C = = MP 12 11 6 16 6 16 49 101 120 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 13 11 6 16 6 10 41 100 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 10 41 100 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 6 36 97 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 11 43 101 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 11 43 101 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 89 C G = = MP 18 17 6 22 6 16 48 99 118 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 19 17 6 22 6 9 40 98 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 9 40 98 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 6 36 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 10 42 99 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 11 42 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 88 G C = = MP 24 23 6 28 6 15 46 97 116 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -4.571 0.545 -4.420 1.433 -5.422 -5.037 1.049 -5.045 -4.785 3.022 -5.065 -0.890 -0.850 -4.303 -2.580 -3.376 ML 25 23 6 28 6 9 40 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 9 40 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 6 35 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 10 41 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 10 42 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 87 C G = = MP 30 29 6 34 6 14 44 95 114 -10.245 -4.164 -0.092 -8.961 -9.240 -9.635 -6.075 -6.029 -5.718 -2.052 0.118 -6.109 3.484 -5.105 -5.725 1.221 -6.008 -3.893 -0.647 -6.092 -1.918 -4.505 ML 31 29 6 34 6 9 39 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 9 39 93 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 5 35 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 10 41 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 11 42 94 113 -3.190 -0.268 -6.702 -4.869 -5.975 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 85 g u = = MP 36 35 6 40 6 14 43 93 112 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -3.413 -1.255 -5.060 0.684 -5.534 -3.282 1.201 -4.030 -3.027 1.532 -0.139 2.728 -1.193 -3.865 -2.498 -2.920 ML 37 35 6 40 6 9 39 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 8 38 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 5 35 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 10 40 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 10 40 92 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 84 G C = = MP 42 41 6 46 6 12 41 91 110 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.551 -4.574 -6.605 -1.430 -6.532 -5.918 0.965 -6.728 -5.856 3.708 -6.096 -2.347 -2.470 -5.915 -3.942 -5.510 ML 43 41 6 46 6 8 38 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 8 37 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 5 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 9 39 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 9 39 90 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 83 G C = = MP 48 47 6 52 6 10 39 89 108 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 49 47 6 52 6 8 37 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 7 36 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 5 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 8 38 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 8 38 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 82 G C = = MP 54 53 6 58 4 8 37 87 106 -8.999 -9.206 -0.013 -7.620 -6.551 -4.574 -6.605 -1.430 -6.532 -5.918 0.965 -6.728 -5.856 3.708 -6.096 -2.347 -2.470 -5.915 -3.942 -5.510 ML 55 53 6 58 4 7 36 88 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 6 35 88 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 5 34 87 106 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 7 36 90 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 7 36 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - + - ML 60 59 6 62 3 6 35 85 104 -9.935 -0.005 -8.589 -3.354 -0.768 -4.114 1.704 D 61 59 6 62 3 4 33 84 103 -6.174 -1.687 -0.566 IL 62 62 3 62 3 6 35 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - A - + - ML 63 62 3 65 2 5 34 84 103 -10.528 -0.001 1.117 -4.096 0.766 -3.781 D 64 62 3 65 2 4 33 83 102 -8.445 -0.004 IL 65 65 3 65 2 5 34 85 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 66 65 3 67 185 4 33 83 102 [ BEGL 14 ] - - - - - - S 67 66 1 68 1 0 5 50 69 0.000 [ BIF 15 ] - - - - - - B 68 67 1 69 125 0 5 50 69 [ BEGL 16 ] - - - - - - S 69 68 1 70 4 0 0 30 49 -0.017 -8.205 -7.613 -8.253 [ MATP 17 ] 12 29 C G = = MP 70 69 1 74 6 2 2 30 49 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 71 69 1 74 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 1 74 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 1 74 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 28 C G = = MP 76 75 6 80 6 2 2 28 47 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.504 -6.604 -5.978 -2.694 -4.417 -6.231 3.049 -5.292 -6.033 -2.581 -6.229 -4.657 2.792 -6.428 -2.086 -4.820 ML 77 75 6 80 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 79 75 6 80 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 80 80 5 80 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 81 81 6 81 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 27 G C = = MP 82 81 6 86 6 2 2 26 45 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.602 -4.604 -6.693 -1.464 -6.672 -5.996 -2.030 -6.790 -5.875 3.718 -6.132 -2.358 -2.612 -6.013 0.775 -5.575 ML 83 81 6 86 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 84 81 6 86 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 85 81 6 86 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 86 86 5 86 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 87 87 6 87 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 26 G C = = MP 88 87 6 92 6 2 2 24 43 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -4.612 -3.265 -4.455 1.401 -5.528 -5.074 -0.635 -5.094 -4.824 3.137 -5.100 0.319 1.025 -4.337 -2.644 -3.406 ML 89 87 6 92 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 90 87 6 92 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 91 87 6 92 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 92 92 5 92 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 93 93 6 93 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 25 G C = = MP 94 93 6 98 6 2 2 22 41 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -4.864 -3.471 -4.730 1.385 -5.764 -5.289 -0.878 -5.324 -4.994 3.311 -5.282 -1.095 0.931 -4.603 -2.894 -3.664 ML 95 93 6 98 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 96 93 6 98 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 97 93 6 98 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 98 98 5 98 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 99 99 6 99 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 24 C G = = MP 100 99 6 104 6 2 2 20 39 -10.245 -10.184 -0.163 -8.961 -9.240 -3.303 -5.396 -5.191 -5.248 -1.109 -3.991 -5.868 3.237 -4.721 -5.177 1.245 -5.587 -2.870 1.550 -5.514 -1.543 -3.931 ML 101 99 6 104 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 102 99 6 104 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 103 99 6 104 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 104 104 5 104 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 105 105 6 105 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 23 U A = = MP 106 105 6 110 4 2 2 18 37 -8.783 -8.990 -0.015 -7.404 -6.393 -6.533 -5.825 -2.670 -4.242 -6.047 1.898 -5.127 -5.894 -2.583 -6.068 -4.662 3.514 -6.297 -1.923 -4.688 ML 107 105 6 110 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 108 105 6 110 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 109 105 6 110 4 0 0 17 36 -6.733 -6.415 -0.280 -2.685 IL 110 110 5 110 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 111 111 6 111 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 112 111 6 114 3 1 1 15 33 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 113 111 6 114 3 0 0 16 34 -6.174 -1.687 -0.566 IL 114 114 3 114 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - G - + - ML 115 114 3 117 3 1 1 13 32 -9.935 -0.005 -8.589 -4.645 -6.240 1.972 -5.380 D 116 114 3 117 3 0 0 15 33 -6.174 -1.687 -0.566 IL 117 117 3 117 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - G - + - ML 118 117 3 120 3 1 1 12 30 -9.935 -0.005 -8.589 -4.645 -6.240 1.972 -5.380 D 119 117 3 120 3 0 0 13 32 -6.174 -1.687 -0.566 IL 120 120 3 120 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - U - + - ML 121 120 3 123 2 1 1 1 1 * 0.000 -4.823 -4.398 -5.641 1.962 D 122 120 3 123 2 0 0 0 0 * 0.000 IL 123 123 3 123 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 124 123 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 125 68 1 126 5 0 0 31 50 -8.920 -0.011 -8.736 -8.948 -9.839 IL 126 126 2 126 5 1 1 33 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 48 G C = = MP 127 126 2 131 6 2 2 31 50 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 128 126 2 131 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 2 131 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 2 131 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 47 G U = = MP 133 132 6 137 6 2 2 29 48 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.138 -5.052 -6.064 -1.407 -5.587 -7.242 1.398 -5.737 -5.796 -1.699 -6.252 3.604 -2.104 -6.968 -3.239 -4.769 ML 134 132 6 137 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 46 C G = = MP 139 138 6 143 6 2 2 27 46 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 140 138 6 143 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 141 138 6 143 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 45 G C = = MP 145 144 6 149 6 2 2 25 44 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 146 144 6 149 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 148 144 6 149 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 149 149 5 149 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 150 150 6 150 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 44 G C = = MP 151 150 6 155 6 2 2 23 42 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 152 150 6 155 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 153 150 6 155 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 154 150 6 155 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 155 155 5 155 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 156 156 6 156 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 35 43 A U = = MP 157 156 6 161 4 2 2 21 40 -8.999 -9.206 -0.013 -7.620 -7.270 -6.001 -5.907 3.958 -8.780 -9.944 -4.482 -5.783 -7.038 -2.652 -7.658 -3.203 -4.726 -8.621 -6.340 -5.293 ML 158 156 6 161 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 159 156 6 161 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 160 156 6 161 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 161 161 5 161 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 162 162 6 162 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - + - ML 163 162 6 165 3 1 1 19 37 -9.935 -0.005 -8.589 -5.233 1.965 -5.733 -4.331 D 164 162 6 165 3 0 0 19 37 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - + - ML 166 165 3 168 3 1 1 17 36 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 167 165 3 168 3 0 0 18 36 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - + - ML 169 168 3 171 3 1 1 16 35 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 170 168 3 171 3 0 0 17 35 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - C - + - ML 172 171 3 174 3 1 1 15 33 -9.935 -0.005 -8.589 -5.233 1.965 -5.733 -4.331 D 173 171 3 174 3 0 0 16 34 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 175 174 3 177 3 1 1 13 32 -9.935 -0.005 -8.589 1.975 -5.761 -5.179 -5.418 D 176 174 3 177 3 0 0 15 33 -6.174 -1.687 -0.566 IL 177 177 3 177 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - + - ML 178 177 3 180 3 1 1 12 30 -9.935 -0.005 -8.589 -4.645 -6.240 1.972 -5.380 D 179 177 3 180 3 0 0 13 32 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - + - ML 181 180 3 183 2 1 1 1 1 * 0.000 1.975 -5.761 -5.179 -5.418 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 44 ] - - - - - - S 185 66 1 186 2 0 3 45 63 -10.528 -0.001 IL 186 186 2 186 2 1 4 47 66 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 45 ] - - - - - - B 187 186 2 188 238 0 3 45 63 [ BEGL 46 ] - - - - - - S 188 187 1 189 4 0 0 28 46 -0.017 -8.205 -7.613 -8.253 [ MATP 47 ] 49 66 G C = = MP 189 188 1 193 6 2 2 28 46 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.423 0.823 -8.202 -1.893 -8.981 -6.068 -3.678 -8.318 -6.062 3.761 -6.312 -2.532 -3.979 -6.369 -5.933 -7.020 ML 190 188 1 193 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 1 193 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 1 193 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 50 65 A U = = MP 195 194 6 199 6 2 2 26 44 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.208 -5.275 -6.042 3.615 -5.304 -7.032 1.441 -5.657 -5.854 -1.801 -6.279 -2.690 -1.847 -6.860 -2.967 -4.785 ML 196 194 6 199 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 64 G C = = MP 201 200 6 205 6 2 2 24 42 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -6.843 -4.587 -7.249 -1.521 -8.444 -6.191 -3.337 -7.462 -5.920 3.656 -6.234 1.436 -3.582 -6.297 -5.479 -6.026 ML 202 200 6 205 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 63 u a = = MP 207 206 6 211 6 2 2 22 40 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -5.198 -4.820 -5.079 -0.866 -4.024 -5.725 1.694 -4.690 -5.055 2.338 -5.466 -2.511 2.653 -5.286 -1.572 -3.811 ML 208 206 6 211 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 6 211 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 62 u a = = MP 213 212 6 217 6 2 2 20 38 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -5.198 -4.820 -5.079 -0.866 -4.024 -5.725 1.694 -4.690 -5.055 2.338 -5.466 -2.511 2.653 -5.286 -1.572 -3.811 ML 214 212 6 217 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 6 1 1 19 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 216 212 6 217 6 0 0 17 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 217 217 5 217 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 218 218 6 218 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 61 C G = = MP 219 218 6 223 4 2 2 18 36 -1.288 -9.206 -0.777 -7.620 -8.501 -8.698 -7.280 -4.981 -5.604 -7.170 3.970 -7.170 -7.984 -4.961 -7.211 -6.997 -2.988 -8.396 -3.969 -6.787 ML 220 218 6 223 4 1 1 16 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 221 218 6 223 4 1 1 17 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 222 218 6 223 4 0 0 16 34 -4.568 -4.250 -2.265 -0.520 IL 223 223 5 223 4 1 1 17 35 -4.755 -1.116 -1.007 -7.923 0.000 0.000 0.000 0.000 IR 224 224 6 224 3 1 1 16 35 -2.933 -0.236 -5.633 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - G - + - ML 225 224 6 227 3 1 1 15 33 -9.935 -0.005 -8.589 -1.776 -4.850 1.857 -4.286 D 226 224 6 227 3 0 0 16 34 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - a - + - ML 228 227 3 230 3 1 1 13 32 -9.935 -0.005 -8.589 0.960 -1.985 -1.274 0.473 D 229 227 3 230 3 0 0 15 33 -6.174 -1.687 -0.566 IL 230 230 3 230 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - g - + - ML 231 230 3 233 3 1 1 12 30 -9.935 -0.005 -8.589 -0.389 -1.090 0.480 0.456 D 232 230 3 233 3 0 0 13 32 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - u - + - ML 234 233 3 236 2 1 1 1 1 * 0.000 -0.155 -1.897 0.333 0.654 D 235 233 3 236 2 0 0 0 0 * 0.000 IL 236 236 3 236 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 237 236 3 -1 0 0 0 0 0 [ BEGR 58 ] - - - - - - S 238 187 1 239 5 0 0 27 46 -8.920 -0.011 -8.736 -8.948 -9.839 IL 239 239 2 239 5 1 1 29 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 67 81 G C = = MP 240 239 2 244 6 2 2 27 46 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 241 239 2 244 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 242 239 2 244 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 243 239 2 244 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 244 244 5 244 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 245 245 6 245 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 68 80 G C = = MP 246 245 6 250 6 2 2 25 44 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 247 245 6 250 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 248 245 6 250 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 249 245 6 250 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 250 250 5 250 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 251 251 6 251 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 69 79 G C = = MP 252 251 6 256 6 2 2 23 42 -10.245 -10.184 -0.010 -8.961 -9.240 -9.635 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 253 251 6 256 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 254 251 6 256 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 255 251 6 256 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 256 256 5 256 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 257 257 6 257 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 70 78 G C = = MP 258 257 6 262 4 2 2 21 40 -8.999 -9.206 -0.013 -7.620 -7.897 -4.798 -9.309 -2.164 -9.373 -6.031 -3.934 -9.123 -6.152 3.944 -6.368 -2.688 -4.300 -6.450 -6.288 -8.169 ML 259 257 6 262 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 260 257 6 262 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 261 257 6 262 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 262 262 5 262 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 263 263 6 263 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 71 - U - + - ML 264 263 6 266 3 1 1 19 37 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 265 263 6 266 3 0 0 19 37 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 72 - U - + - ML 267 266 3 269 3 1 1 17 36 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 268 266 3 269 3 0 0 18 36 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 73 - C - + - ML 270 269 3 272 3 1 1 16 35 -9.935 -0.005 -8.589 -5.233 1.965 -5.733 -4.331 D 271 269 3 272 3 0 0 17 35 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 74 - G - + - ML 273 272 3 275 3 1 1 15 33 -9.935 -0.005 -8.589 -0.806 -4.237 1.723 -3.755 D 274 272 3 275 3 0 0 16 34 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 75 - A - + - ML 276 275 3 278 3 1 1 13 32 -9.935 -0.005 -8.589 1.975 -5.761 -5.179 -5.418 D 277 275 3 278 3 0 0 15 33 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 279 278 3 281 3 1 1 12 30 -9.935 -0.005 -8.589 -4.823 -4.398 -5.641 1.962 D 280 278 3 281 3 0 0 13 32 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - U - + - ML 282 281 3 284 2 1 1 1 1 * 0.000 -4.823 -4.398 -5.641 1.962 D 283 281 3 284 2 0 0 0 0 * 0.000 IL 284 284 3 284 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 285 284 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-SeC-050516 LENG 89 MAXL 182 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Thu May 5 11:04:41 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-SeC-050516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-SeC-050516.sto NSEQ 13 EFFN 1.964600 CKSUM 842893808 STATS LOCAL MSV -9.1557 0.71887 STATS LOCAL VITERBI -10.0884 0.71887 STATS LOCAL FORWARD -3.2829 0.71887 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.81743 1.25154 1.10290 1.51601 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 0.00000 * 1 2.45548 3.03333 0.20476 2.97240 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 2 2.45996 3.03816 0.20358 2.97925 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 3 3.00119 0.29258 2.75371 1.96438 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 4 1.51120 1.82200 0.76907 1.86943 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 5 2.16789 0.75522 1.68736 1.46678 5 c = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 6 1.66934 1.63552 0.85444 1.65414 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 7 2.06777 1.90715 0.49616 2.15277 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 8 2.46198 3.04034 0.20305 2.98234 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 9 2.06776 1.90714 0.49616 2.15276 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 10 2.02371 1.70716 2.53676 0.49868 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 11 0.83834 2.35499 1.10742 1.95003 11 a + - , 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 12 3.01637 0.29054 2.76042 1.96686 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 13 2.44840 0.84927 2.17899 0.98702 13 c = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 14 1.95779 1.99290 0.59502 1.76621 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 15 1.65567 2.02237 0.68900 1.74516 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 16 1.68421 2.05461 0.65511 1.79048 16 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 17 2.17694 0.87709 1.60178 1.31274 17 c = - < 1.38629 1.38629 1.38629 1.38629 0.13472 3.86177 2.25368 1.46634 0.26236 1.09861 0.40547 18 2.38029 1.15991 2.09166 0.75400 18 u = - < 1.38629 1.38629 1.38629 1.38629 0.04701 3.77405 3.77405 1.46634 0.26236 0.33686 1.25180 19 2.43331 2.42777 2.94272 0.25968 19 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 20 2.50173 3.35060 0.18710 2.92565 20 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 21 2.50173 3.35060 0.18710 2.92565 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 22 2.43331 2.42777 2.94272 0.25968 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13472 3.86177 2.25368 1.46634 0.26236 1.09861 0.40547 23 0.86778 2.25443 1.02686 2.14515 23 a = - > 1.38629 1.38629 1.38629 1.38629 0.04701 3.77405 3.77405 1.46634 0.26236 0.33686 1.25180 24 1.51287 1.72992 0.77847 1.94270 24 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 25 1.98344 0.73978 1.87627 1.46089 25 c = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 26 1.93826 0.81202 1.84159 1.37231 26 c = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 27 2.21378 0.66615 1.64127 1.69664 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 28 1.12821 2.34134 0.75438 2.20828 28 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 29 2.23498 2.91563 0.25469 2.75392 29 G = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 30 2.46965 3.04862 0.20104 2.99412 30 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 31 1.91499 1.66293 0.64364 1.98270 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 32 3.01168 0.29116 2.75835 1.96610 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 33 2.46619 3.04488 0.20194 2.98880 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 34 2.46535 3.04397 0.20216 2.98751 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 35 0.42918 2.54873 1.67236 2.48927 35 A = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 36 2.61581 0.25445 3.18754 2.20479 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 37 2.43331 2.42777 2.94272 0.25968 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 38 2.43331 2.42777 2.94272 0.25968 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 39 2.61581 0.25445 3.18754 2.20479 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 40 0.19080 3.04889 2.79188 2.73355 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 41 2.50173 3.35060 0.18710 2.92565 41 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 42 0.19080 3.04889 2.79188 2.73355 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 43 2.71940 1.94485 2.36272 0.36110 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 44 3.20114 0.23769 2.87616 2.16728 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 45 3.20408 0.23737 2.87739 2.16785 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 46 2.24388 2.92684 0.25154 2.76804 46 G = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 47 2.22297 1.62832 1.53222 0.73523 47 u = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 48 3.21979 0.23567 2.88390 2.17084 48 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 49 1.85381 2.67968 0.36112 2.55262 49 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 50 0.90208 1.55009 1.51906 1.81322 50 a = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 51 2.08686 2.71833 0.30743 2.59554 51 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 52 2.00581 1.37293 1.20409 1.16437 52 u = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 53 2.00545 1.37299 1.20416 1.16441 53 u = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 54 3.00474 0.29210 2.75528 1.96497 54 C = - < 1.38629 1.38629 1.38629 1.38629 0.33946 1.32120 3.86177 0.15081 1.96620 1.09861 0.40547 55 1.92105 2.92518 0.33005 2.51325 56 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 56 0.94091 1.96390 1.89833 1.14068 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 57 1.39514 1.82119 1.31974 1.12960 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 58 1.33489 1.95894 1.37881 1.06733 59 u + - _ 1.38629 1.38629 1.38629 1.38629 0.17954 1.94271 3.86177 0.27139 1.43681 1.09861 0.40547 59 2.23982 2.92173 0.25297 2.76160 61 G = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 60 1.32248 1.31069 1.22584 1.76971 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 61 1.32247 1.31071 1.22586 1.76967 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 62 2.81880 0.44629 2.53301 1.51001 64 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 63 2.05311 1.70510 1.41257 0.80656 65 u = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 64 2.76708 0.36686 2.48800 1.82528 66 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 65 2.46965 3.04862 0.20104 2.99412 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 66 2.46835 3.04721 0.20138 2.99212 68 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 67 2.46719 3.04596 0.20168 2.99033 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 68 2.46619 3.04488 0.20194 2.98880 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 69 2.43331 2.42777 2.94272 0.25968 71 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 70 2.43331 2.42777 2.94272 0.25968 72 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 71 2.61581 0.25445 3.18754 2.20479 73 C + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 72 1.59611 2.69755 0.46458 2.28724 74 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 73 0.19080 3.04889 2.79188 2.73355 75 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 74 2.43331 2.42777 2.94272 0.25968 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 75 2.43331 2.42777 2.94272 0.25968 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 76 3.20408 0.23737 2.87739 2.16785 78 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 77 3.20789 0.23696 2.87898 2.16858 79 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 78 3.21292 0.23641 2.88106 2.16954 80 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 79 3.21979 0.23567 2.88390 2.17084 81 C = - > 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 80 2.39593 0.55606 1.77165 1.79942 82 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 81 3.18926 0.23900 2.87120 2.16499 83 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 82 2.39535 0.55621 1.77159 1.79928 84 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 83 1.87910 1.26204 1.41810 1.13313 85 u = - ) 1.38629 1.38629 1.38629 1.38629 0.09226 2.70158 3.86177 0.54041 0.87350 1.09861 0.40547 84 1.61132 1.81966 0.70170 1.94804 87 g = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 85 2.10870 0.81163 1.66177 1.40785 88 c = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 86 2.24098 2.92319 0.25256 2.76343 89 G = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 87 3.20030 0.23778 2.87581 2.16712 90 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 88 3.20327 0.23746 2.87706 2.16769 91 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04297 3.86177 3.86177 1.46634 0.26236 1.09861 0.40547 89 2.50173 3.35060 0.18710 2.92565 92 G + - : 1.38629 1.38629 1.38629 1.38629 0.02172 3.84051 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal.i1f0000644000543100007160000055617213054731276020765 0ustar pchanlowelabZc; j7?ZAla$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               nj7?j7?\j7? >w5>kz>q>Zd_j7?ZArg$@                                                                                                                                                                                                                                                                                                                                     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~5q>6S><>>X Zo A$7?ZThr$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           P7?7?v^7?א Va<>o>e>(z>\ Zb8?ZTrp$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          P8?K 8?Z8?< KxS7N>)e>j>hJ|>`U ZaG 8?ZTyr$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   8?8?c8? Tǔ>fL>p}>u >dZl7?ZVal$@                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ?W 7?d7?2r7?$>t>X>-z>tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-His.cm0000644000543100007160000017236012573631164021417 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-His STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:53:37 2015 COM [1] cmbuild --hand --enone His_model.cm aligntRNAdb-His.sto COM [2] cmcalibrate --seed 208 His_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 758269300 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.3237 0.71870 ECMLC 0.55494 -8.85494 2.04328 1600000 507832 0.002363 ECMGC 0.26951 -42.46794 -24.85056 1600000 46147 0.008668 ECMLI 0.58105 -7.87479 2.44022 1600000 480998 0.002495 ECMGI 0.28117 -38.07984 -21.32147 1600000 44505 0.008988 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 118 -13.075 -14.320 -0.031 -5.552 IL 1 1 2 1 4 20 40 100 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 42 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - C - + MR 3 2 3 5 5 25 48 99 118 -13.096 -0.001 -12.911 -13.123 -14.015 -4.458 1.927 -8.535 -2.753 D 4 2 3 5 5 17 37 95 114 -8.312 -3.667 -5.938 -0.189 -5.363 IR 5 5 3 5 5 20 40 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 G C = = MP 6 5 3 10 6 26 47 98 117 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -11.983 -8.606 -14.312 -6.083 -13.608 -9.769 -7.906 -13.764 -2.555 3.981 -10.168 -6.539 -8.272 -10.236 -10.357 -13.407 ML 7 5 3 10 6 18 39 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 37 94 113 -10.054 -8.783 -4.691 -8.761 -0.077 -6.974 -3.379 -3.085 -4.165 1.899 D 9 5 3 10 6 15 35 93 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 40 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 40 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 U A = = MP 12 11 6 16 6 25 45 96 115 -14.048 -4.790 -0.054 -12.764 -13.044 -13.439 -11.079 -11.361 -10.396 -7.598 -2.616 -10.541 0.292 -9.662 -10.500 -7.569 -10.620 -9.765 3.862 -10.913 -4.211 -9.302 ML 13 11 6 16 6 18 38 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 36 92 111 -10.054 -8.783 -4.691 -8.761 -3.895 -0.170 1.933 -4.339 -3.814 -4.053 D 15 11 6 16 6 15 35 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 40 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 22 43 94 114 -5.335 -0.056 -8.846 -7.013 -8.119 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 A U = = MP 18 17 6 22 6 23 44 93 113 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -2.319 -1.318 -10.264 3.811 -12.405 -13.560 -7.863 -2.475 -9.824 -0.519 -10.494 -1.621 -7.787 -11.569 -9.693 -2.795 ML 19 17 6 22 6 17 37 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 37 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 35 89 108 -12.611 -11.309 -7.106 -7.788 -7.805 -0.024 IL 22 22 5 22 6 19 39 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 39 93 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 A U = = MP 24 23 6 28 6 22 42 91 111 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -0.294 -2.407 -3.468 3.511 -12.165 -12.860 -7.549 -10.243 -9.774 1.272 -10.418 -0.143 -2.524 -11.245 -9.415 -8.780 ML 25 23 6 28 6 16 36 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 36 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 35 88 107 -12.611 -11.309 -7.106 -7.788 -0.121 -3.881 IL 28 28 5 28 6 16 37 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 37 91 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 A U = = MP 30 29 6 34 6 20 40 89 109 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -8.628 -1.925 -8.502 3.541 -3.418 -9.267 -4.821 -9.088 -0.786 1.432 -9.117 -2.551 -1.675 -2.783 -6.819 -4.710 ML 31 29 6 34 6 15 35 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 37 88 107 -10.054 -8.783 -0.121 -8.761 -3.895 -6.974 -3.379 -3.085 -4.165 1.899 D 33 29 6 34 6 12 32 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 U A = = MP 36 35 6 40 6 18 38 87 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.779 -10.571 0.468 -9.692 -10.530 -7.600 -10.650 -9.796 3.822 -10.943 -2.578 -9.332 ML 37 35 6 40 6 15 35 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 36 87 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 A U = = MP 42 41 6 46 4 16 36 85 105 -13.280 -13.487 -0.001 -11.901 -10.099 -3.101 -10.294 3.881 -12.434 -13.589 -7.892 -10.336 -9.854 -0.846 -10.524 -2.407 -2.158 -2.534 -9.722 -8.892 ML 43 41 6 46 4 14 34 86 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 86 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 32 85 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 35 88 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 14 34 83 102 -14.190 -0.000 -12.844 -4.858 -4.907 -8.039 1.974 D 49 47 6 50 3 12 32 82 102 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 34 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 13 33 82 101 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 12 32 81 101 -8.445 -0.004 IL 53 53 3 53 2 13 33 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 32 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 27 G C = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.565 -8.651 -12.738 -0.646 -13.414 -9.985 -7.931 -12.587 -9.984 3.832 -10.236 0.142 -8.228 -10.384 -10.281 -11.462 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 U A = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -4.292 -10.571 -0.697 -9.692 -10.530 -7.600 -10.650 -9.796 3.876 -10.943 -0.651 -9.332 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 2 17 36 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -2.084 -1.944 -10.530 -7.599 -10.650 -9.794 3.904 -10.943 -0.950 -9.332 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 33 -14.190 -0.000 -12.844 1.987 -9.997 -9.373 -4.890 D 83 81 6 84 3 0 0 17 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.190 -0.524 -1.716 1.776 -1.929 -2.406 -3.006 D 86 84 3 87 3 0 0 16 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 13 31 -13.667 -1.370 -0.706 -0.019 0.922 -4.472 0.103 D 89 87 3 90 3 0 0 11 30 -13.899 -9.412 -0.002 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - c - + - ML 91 90 3 93 3 1 1 12 30 -3.695 -5.401 -0.153 0.258 0.703 -5.047 0.197 D 92 90 3 93 3 0 0 11 30 -15.159 -1.106 -0.901 IL 93 93 3 93 3 1 1 13 31 -3.645 -0.140 -6.346 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 12 30 -12.744 -0.001 -11.398 1.706 -6.450 -0.727 -3.047 D 95 93 3 96 3 0 0 10 28 -14.953 -1.165 -0.852 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - + - ML 97 96 3 99 3 1 1 10 29 -13.568 -4.517 -0.065 1.585 -0.559 -2.536 -2.744 D 98 96 3 99 3 0 0 9 27 -14.102 -9.615 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 6 14 -9.061 -0.010 -7.715 -1.834 0.552 -2.699 1.070 D 101 99 3 102 3 0 0 6 14 -5.630 -0.035 -7.979 IL 102 102 3 102 3 1 1 8 15 -3.583 -0.146 -6.283 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.180 -9.415 -9.520 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -4.924 -0.049 -12.941 -13.153 -14.045 1.844 -2.573 -2.705 -3.482 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -5.222 -0.061 -6.901 -8.733 -8.006 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.986 -11.201 -10.357 -7.373 -0.615 -3.150 1.262 -3.641 -1.553 -7.306 -10.589 -9.456 3.589 -2.774 -2.944 -3.549 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.389 -10.426 -7.624 -2.597 -10.570 0.711 -2.446 -10.529 -7.595 -10.649 -9.790 3.717 -10.942 -0.355 -3.969 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -0.791 -2.178 -10.294 3.921 -12.425 -13.584 -7.885 -10.336 -9.854 -5.421 -10.524 -6.046 -7.814 -11.599 -9.716 -8.892 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.057 -2.820 -14.618 -6.130 -13.665 -0.821 -7.939 -13.967 -10.007 3.906 -10.194 -1.872 -8.309 -10.256 -10.399 -13.850 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.193 -1.478 -10.072 3.720 -9.277 -11.064 -1.476 -4.108 -9.886 -0.906 -10.336 -6.785 0.327 -10.744 -2.514 -3.952 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -4.781 -0.404 -7.808 1.680 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.310 -3.020 -10.146 1.954 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.718 -8.378 -4.992 1.987 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.917 -9.502 -2.189 -9.180 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.749 -2.129 -1.480 -4.303 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - u - + - ML 166 165 2 168 3 1 6 50 69 -14.190 -0.000 -12.844 0.428 0.290 -7.213 0.511 D 167 165 2 168 3 0 5 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 7 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - + - ML 169 168 3 171 2 1 5 49 68 -14.843 -0.000 1.613 -1.517 -1.070 -3.127 D 170 168 3 171 2 0 4 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 6 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 29 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 5 29 47 -4.390 -0.071 -12.844 1.865 -7.579 -3.645 -1.876 D 232 230 2 233 3 0 0 28 46 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 29 47 -4.656 -0.068 -7.356 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 5 28 46 -13.126 -0.001 -12.941 -13.153 -14.045 -2.349 0.064 -7.652 1.461 D 235 233 3 236 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 29 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 93 A U = = MP 237 236 3 241 6 2 5 27 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.180 -2.130 -10.294 3.849 -12.435 -13.590 -7.893 -10.336 -9.854 -0.267 -10.524 -1.742 -7.818 -11.599 -9.724 -8.892 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 28 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 92 G C = = MP 243 242 6 247 6 2 5 25 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.875 -8.611 -13.668 1.735 -13.438 -3.735 -7.821 -13.462 -9.985 3.607 -10.179 -3.006 -8.176 -1.878 -10.227 -12.697 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 91 A U = = MP 249 248 6 253 6 2 4 23 41 -5.580 -14.017 -0.031 -12.794 -13.073 -13.468 -10.099 -0.188 -10.294 3.498 -12.435 -13.576 -7.892 -10.337 -9.854 1.874 -10.523 -2.766 -7.817 -11.597 -9.723 -8.893 ML 250 248 6 253 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -5.470 -5.733 -3.651 -0.199 -8.164 -7.825 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 90 A U = = MP 255 254 6 259 6 2 2 21 39 -14.047 -13.987 -0.101 -5.628 -13.043 -4.414 -10.067 -0.362 -10.262 3.654 -12.402 -13.550 -7.859 -10.305 -9.823 1.230 -10.492 -2.580 -7.784 -3.290 -9.690 -8.861 ML 256 254 6 259 6 1 1 23 41 -9.527 -9.873 -4.587 -0.077 -9.723 -7.252 1.935 -4.383 -3.856 -4.098 MR 257 254 6 259 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 89 G C = = MP 261 260 6 265 4 2 2 19 36 -13.147 -13.354 -0.034 -5.438 -2.895 0.830 -4.017 -0.973 -1.845 -3.614 -3.950 -4.071 -8.192 3.610 -8.438 -2.530 -1.333 -7.607 -2.112 -6.719 ML 262 260 6 265 4 1 1 22 40 -1.591 -7.704 -0.618 -6.434 0.610 0.807 -2.563 -0.848 MR 263 260 6 265 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 18 36 -9.138 -8.819 -0.049 -5.090 IL 265 265 5 265 4 1 1 22 40 -4.303 -4.986 -0.133 -7.471 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - c - + - ML 267 266 6 269 3 1 1 17 34 -3.978 -0.095 -12.814 0.232 0.803 -3.277 -0.032 D 268 266 6 269 3 0 0 15 33 -10.116 -0.066 -4.507 IL 269 269 3 269 3 1 1 17 34 -2.283 -0.339 -7.987 0.000 0.000 0.000 0.000 [ MATL 69 ] 80 - U - + - ML 270 269 3 272 3 1 1 15 32 -14.190 -0.000 -12.844 -2.384 -0.691 -2.167 1.569 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 81 - C - + - ML 273 272 3 275 3 1 1 14 31 -14.190 -0.000 -12.844 -0.580 1.061 -2.820 0.141 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 82 - A - + - ML 276 275 3 278 3 1 1 13 29 -5.871 -0.025 -12.844 1.774 -2.791 -2.225 -2.179 D 277 275 3 278 3 0 0 14 32 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 13 30 -3.427 -0.164 -6.128 0.000 0.000 0.000 0.000 [ MATL 72 ] 84 - A - + - ML 279 278 3 281 3 1 1 12 28 -14.190 -0.005 -8.164 1.500 -1.078 -2.791 -0.854 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 85 - A - + - ML 282 281 3 284 3 1 1 10 21 -3.819 -0.301 -3.089 1.468 -0.607 -2.414 -1.358 D 283 281 3 284 3 0 0 8 19 -7.905 -3.418 -0.148 IL 284 284 3 284 3 1 1 11 22 -2.463 -0.295 -8.119 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.046 1.049 -3.888 -0.267 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-His LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:53:37 2015 COM [1] cmbuild --hand --enone His_model.cm aligntRNAdb-His.sto NSEQ 282 EFFN 5.383026 CKSUM 758269300 STATS LOCAL MSV -9.1386 0.71870 STATS LOCAL VITERBI -9.7211 0.71870 STATS LOCAL FORWARD -3.3914 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.10098 1.67536 1.65477 1.24106 1.38629 1.38629 1.38629 1.38629 0.04025 4.41852 3.59713 1.46634 0.26236 0.00000 * 1 3.07726 3.96197 0.08973 3.87710 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 2 3.37240 1.65925 3.18490 0.30921 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 3 0.21269 3.15741 2.31292 2.99406 3 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 4 0.88544 2.24645 1.04666 2.03573 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 5 1.00795 1.97668 1.12646 1.75836 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 0.63108 0.75932 6 3.24904 1.57435 3.05339 0.34694 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 7 0.19265 3.46885 2.28279 3.16819 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 8 3.03771 2.95498 3.64038 0.13498 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 9 0.05201 4.27855 3.92033 4.07570 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 10 2.50446 3.65878 0.14734 3.52282 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 11 4.34826 3.03366 4.22910 0.07865 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 12 3.54532 1.95985 3.35965 0.22877 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 13 3.81637 2.47189 3.64092 0.14233 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 14 0.06713 4.03772 3.77155 3.71822 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 15 0.33356 2.35268 2.43493 2.29347 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.28659 4.41852 1.43915 1.46634 0.26236 1.09861 0.40547 16 1.35291 1.07468 2.30735 1.20204 16 c + - _ 1.38629 1.38629 1.38629 1.38629 0.57635 4.16353 0.86156 1.46634 0.26236 3.07618 0.04723 17 1.24145 1.32125 2.04758 1.15459 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.64531 2.81966 0.87737 0.72631 0.66105 0.78378 0.61005 18 0.52567 2.35048 1.78069 1.93104 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04639 3.78695 3.78695 1.46634 0.26236 0.82487 0.57677 19 0.56859 1.81811 2.18276 1.84127 20 A + - _ 1.38629 1.38629 1.38629 1.38629 1.05740 4.11847 0.45197 1.46634 0.26236 2.40863 0.09424 20 1.30943 1.45758 1.76569 1.12037 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08496 3.20090 3.20090 1.46634 0.26236 0.03609 3.33985 21 0.05220 4.27483 3.91681 4.07180 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02445 4.41638 4.41638 1.46634 0.26236 0.99307 0.46273 22 0.17311 3.80164 2.27184 3.39636 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 23 0.28648 3.51313 1.70221 3.29643 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 24 0.09118 4.40295 2.85788 4.04474 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 25 3.69834 0.21287 3.46537 1.99724 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 26 0.26402 2.59848 2.56896 2.51283 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.04966 3.31344 4.41852 0.56731 0.83713 1.09861 0.40547 27 1.93409 1.36963 1.81915 0.82308 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 28 2.62952 1.43819 2.41450 0.50897 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 29 0.07875 4.30388 3.09315 4.08296 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 30 2.79168 3.20816 0.14076 3.52157 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 31 0.83755 1.92710 1.42989 1.70197 34 a = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 32 2.55813 1.71989 3.13746 0.35657 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 33 3.16825 2.72710 3.68693 0.14218 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 34 3.68965 4.67345 0.05051 4.20413 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 35 3.04981 2.97079 3.42574 0.14059 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 36 3.68965 4.67345 0.05051 4.20413 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 37 0.14122 3.58668 2.65561 3.38855 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 38 0.34486 2.42823 2.16928 2.41653 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 39 1.92352 1.52953 1.73896 0.77313 42 u = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 40 3.73347 0.14961 3.46837 2.47837 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 41 3.82096 3.32353 4.12000 0.07707 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 42 0.60588 2.59019 1.26714 2.32517 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 43 0.90285 1.99393 1.26086 1.74286 46 a = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 44 1.18329 1.32788 2.39684 1.08564 47 u + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 45 0.47354 2.15361 1.97894 2.09615 48 A + - , 1.38629 1.38629 1.38629 1.38629 1.42279 4.41852 0.29182 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 47 1.80308 1.30591 1.07726 1.49720 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 48 1.80077 1.30662 1.07812 1.49673 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 49 1.79974 1.30693 1.07851 1.49653 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 50 1.79935 1.30705 1.07865 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 51 1.79927 1.30708 1.07868 1.49643 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 52 1.79933 1.30706 1.07866 1.49644 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 53 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 54 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 55 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 57 1.73057 1.22007 1.16199 1.53831 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 58 1.73047 1.22011 1.16203 1.53828 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 59 1.73045 1.22012 1.16203 1.53827 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 60 1.73057 1.22007 1.16199 1.53831 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 61 1.73096 1.21991 1.16185 1.53842 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 62 1.73182 1.21954 1.16154 1.53867 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03176 3.46532 64 0.21723 3.04514 2.82303 2.42773 67 A + - , 1.38629 1.38629 1.38629 1.38629 0.06119 3.05124 4.41852 0.44944 1.01607 1.09861 0.40547 65 2.11700 1.43885 2.85187 0.53671 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 66 0.22508 3.54806 1.98591 3.33782 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 67 1.63059 2.70621 0.42118 2.51177 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 68 0.62131 3.02271 1.03521 2.83126 72 A = - < 1.38629 1.38629 1.38629 1.38629 0.04064 3.58367 4.41852 0.71792 0.66897 1.09861 0.40547 69 0.69236 2.61512 1.08697 2.41677 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.06047 4.41852 3.06566 1.46634 0.26236 1.09861 0.40547 70 1.62013 2.19452 0.58334 2.01977 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.05342 3.74506 3.56188 0.84989 0.55767 0.41674 1.07644 71 1.26064 1.09836 2.30617 1.26066 77 c + - _ 1.38629 1.38629 1.38629 1.38629 0.07377 2.83231 4.40305 0.50716 0.92181 0.63105 0.75936 72 2.03235 1.76995 2.40693 0.49669 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 73 1.55302 0.93026 2.35911 1.20585 81 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 74 0.34060 2.49411 2.38290 2.17325 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03739 3.70289 4.41852 0.79546 0.60034 1.09861 0.40547 75 0.58555 1.92678 2.29481 1.62556 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02694 4.41852 4.23152 1.46634 0.26236 1.09861 0.40547 76 0.60285 1.79282 2.24062 1.71554 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.17821 2.74262 2.31430 0.45988 0.99793 1.16491 0.37390 77 1.34486 0.97072 2.38002 1.31652 88 c + - _ 1.38629 1.38629 1.38629 1.38629 0.10307 4.32529 2.46852 1.46634 0.26236 0.21389 1.64731 78 2.22532 0.58819 2.04351 1.57473 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02612 4.35118 4.35118 1.46634 0.26236 0.49964 0.93331 79 2.68979 1.13785 2.41733 0.64925 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.02479 4.40267 4.40267 1.46634 0.26236 0.62480 0.76651 80 3.06772 1.06614 2.82114 0.59856 91 U = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 81 2.84895 0.46856 2.54018 1.43825 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 82 3.36520 2.19556 3.34237 0.19992 93 U = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 83 3.43303 2.43516 3.28096 0.17134 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 84 0.37977 3.21327 1.48530 3.00939 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 85 1.91819 1.25316 1.78924 0.91520 96 u = - ) 1.38629 1.38629 1.38629 1.38629 0.04025 4.41852 3.59713 1.46634 0.26236 1.09861 0.40547 86 2.11040 1.20171 2.03125 0.80529 97 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 87 3.19191 2.45350 3.00649 0.19425 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.05292 3.23639 4.40305 0.53733 0.87781 0.63108 0.75932 88 0.33910 3.34649 1.56586 3.13564 100 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 89 3.80866 0.11423 3.81697 2.75234 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04025 4.41852 3.59713 1.46634 0.26236 1.09861 0.40547 90 3.17568 0.15350 3.85989 2.53243 102 C + - : 1.38629 1.38629 1.38629 1.38629 0.01247 4.39073 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch-ns.cm0000644000543100007160000017055212710016425020006 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME arch-042516 STATES 283 NODES 95 CLEN 93 W 646 ALPH RNA RF yes CONS yes MAP yes DATE Tue Apr 26 00:12:41 2016 COM [1] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch-ns.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6998 EFFN 6998.000000 CKSUM 685422216 NULL 0.000 0.000 0.000 0.000 EFP7GF -18.5264 0.71073 ECMLC 0.61067 -11.45660 -0.44409 1600000 999586 0.001200 ECMGC 0.27679 -24.05225 -9.03530 1600000 25542 0.015660 ECMLI 0.56182 -11.78460 -0.02144 1600000 889940 0.001348 ECMGI 0.28529 -20.01914 -5.70298 1600000 23758 0.016836 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 646 1334 -17.905 -18.112 -0.000 -16.526 IL 1 1 2 1 4 21 48 649 1337 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 47 649 1336 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - = - ML 3 2 3 5 3 23 48 648 1335 -16.095 -0.003 -8.964 -1.007 -2.626 1.731 -5.558 D 4 2 3 5 3 17 42 644 1332 -11.551 -1.585 -0.585 IL 5 5 3 5 3 23 49 651 1338 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - = - ML 6 5 3 8 3 23 47 647 1334 -16.092 -0.007 -7.666 -5.625 0.819 1.072 -3.141 D 7 5 3 8 3 17 41 643 1330 -17.118 -7.152 -0.010 IL 8 8 3 8 3 23 48 650 1338 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - = - ML 9 8 3 11 3 22 46 646 1333 -7.437 -0.012 -8.539 -2.688 0.925 0.817 -2.435 D 10 8 3 11 3 17 41 643 1330 -18.888 -4.447 -0.068 IL 11 11 3 11 3 23 46 646 1333 -10.967 -0.001 -18.611 0.000 0.000 0.000 0.000 [ MATL 4 ] 5 - g - = - ML 12 11 3 14 3 22 45 645 1332 -6.849 -0.013 -16.082 -1.922 0.796 0.861 -2.440 D 13 11 3 14 3 17 41 643 1330 -19.310 -2.154 -0.367 IL 14 14 3 14 3 22 45 645 1332 -11.553 -0.000 -19.197 0.000 0.000 0.000 0.000 [ MATL 5 ] 7 - C - = - ML 15 14 3 17 3 21 44 644 1331 -16.085 -0.000 -16.085 -1.725 1.092 0.400 -2.015 D 16 14 3 17 3 16 41 642 1330 -18.945 -0.041 -5.172 IL 17 17 3 17 3 19 44 647 1334 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 8 - G - = - ML 18 17 3 20 3 20 43 643 1330 -16.095 -0.000 -16.095 -2.718 0.624 1.053 -2.112 D 19 17 3 20 3 13 35 637 1325 -13.873 -3.907 -0.100 IL 20 20 3 20 3 19 43 646 1333 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 9 - G - = - ML 21 20 3 23 3 19 42 642 1329 -16.095 -0.004 -8.553 -1.480 -5.611 1.800 -2.851 D 22 20 3 23 3 13 35 637 1325 -13.873 -1.906 -0.448 IL 23 23 3 23 3 18 43 645 1332 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 10 - U - + - ML 24 23 3 26 3 18 41 641 1328 -16.091 -0.004 -8.439 -7.640 -4.146 -4.524 1.962 D 25 23 3 26 3 13 35 636 1323 -17.591 -7.625 -0.007 IL 26 26 3 26 3 18 42 644 1332 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - A - + - ML 27 26 3 29 3 18 40 640 1327 -6.499 -0.020 -8.498 1.233 -2.685 0.406 -2.560 D 28 26 3 29 3 13 35 636 1323 -18.601 -2.320 -0.323 IL 29 29 3 29 3 18 40 640 1327 -1.937 -0.437 -19.988 0.000 0.000 0.000 0.000 [ MATL 10 ] 14 - G - = - ML 30 29 3 32 3 17 39 639 1326 -7.816 -0.020 -6.696 -3.557 -2.597 1.895 -5.010 D 31 29 3 32 3 13 34 635 1322 -18.962 -3.849 -0.104 IL 32 32 3 32 3 18 39 639 1326 -10.587 -0.001 -18.231 0.000 0.000 0.000 0.000 [ MATL 11 ] 16 - C - = - ML 33 32 3 35 3 17 38 638 1325 -16.071 -0.012 -6.861 -4.233 1.125 -0.657 0.179 D 34 32 3 35 3 13 34 635 1322 -20.128 -2.163 -0.364 IL 35 35 3 35 3 18 40 641 1329 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 17 - u - = - ML 36 35 3 38 3 17 37 637 1324 -16.064 -0.000 -12.112 -1.919 0.572 -0.422 0.587 D 37 35 3 38 3 13 34 634 1322 -20.499 -1.366 -0.708 IL 38 38 3 38 3 17 39 640 1328 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 18 - u - = - ML 39 38 3 41 3 16 36 636 1323 -8.013 -0.023 -6.365 -2.263 0.416 -0.906 0.944 D 40 38 3 41 3 12 33 633 1320 -19.816 -2.075 -0.391 IL 41 41 3 41 3 16 36 636 1323 -10.381 -0.001 -18.024 0.000 0.000 0.000 0.000 [ MATL 14 ] 20 - A - + - ML 42 41 3 44 3 15 35 635 1322 -6.750 -0.013 -16.063 1.987 -5.598 -6.169 -14.955 D 43 41 3 44 3 12 33 632 1320 -20.556 -1.703 -0.530 IL 44 44 3 44 3 15 35 635 1322 -11.633 -0.000 -19.277 0.000 0.000 0.000 0.000 [ MATL 15 ] 22 - G - + - ML 45 44 3 47 3 14 34 634 1321 -16.073 -0.000 -16.073 -3.322 -7.875 1.946 -4.561 D 46 44 3 47 3 12 32 632 1319 -20.028 -1.373 -0.704 IL 47 47 3 47 3 15 36 637 1325 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 23 - C - + - ML 48 47 3 50 3 13 33 633 1320 -16.082 -0.453 -1.892 -2.699 1.636 -3.948 -0.570 D 49 47 3 50 3 12 32 631 1319 -19.327 -0.905 -1.101 IL 50 50 3 50 3 15 36 637 1324 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 24 - C - + - ML 51 50 3 53 3 13 33 632 1320 -0.173 -3.159 -9.631 -2.365 1.669 -4.790 -0.760 D 52 50 3 53 3 12 31 630 1318 -24.179 -0.000 -13.213 IL 53 53 3 53 3 13 32 631 1319 -6.854 -0.013 -25.444 0.000 0.000 0.000 0.000 [ MATL 18 ] 27 - G - + - ML 54 53 3 56 3 12 31 630 1318 -7.627 -0.008 -12.583 -7.560 -7.497 1.996 -10.563 D 55 53 3 56 3 8 27 624 1312 -16.018 -6.052 -0.022 IL 56 56 3 56 3 12 31 630 1318 -10.785 -0.001 -18.429 0.000 0.000 0.000 0.000 [ MATL 19 ] 29 - G - + - ML 57 56 3 59 3 11 30 629 1317 -16.094 -0.002 -9.226 -6.725 -15.186 1.986 -5.166 D 58 56 3 59 3 8 27 624 1312 -16.228 -2.752 -0.232 IL 59 59 3 59 3 11 32 633 1320 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 30 - U - + - ML 60 59 3 62 3 10 29 628 1316 -0.790 -1.245 -16.091 -0.011 -0.924 -3.349 1.253 D 61 59 3 62 3 8 26 623 1311 -17.475 -7.509 -0.008 IL 62 62 3 62 3 10 30 629 1317 -0.347 -2.227 -27.494 0.000 0.000 0.000 0.000 [ MATL 21 ] 63 - A - + - ML 63 62 3 65 3 8 27 624 1312 -4.820 -0.085 -5.517 1.885 -5.509 -2.273 -3.681 D 64 62 3 65 3 8 26 623 1311 -17.475 -0.016 -6.509 IL 65 65 3 65 3 10 28 625 1312 -2.959 -0.199 -21.435 0.000 0.000 0.000 0.000 [ MATL 22 ] 66 - G - = - ML 66 65 3 68 3 9 27 623 1311 -16.063 -0.001 -10.863 -0.070 -3.039 1.062 -0.254 D 67 65 3 68 3 4 22 621 1308 -20.542 -1.152 -0.863 IL 68 68 3 68 3 9 28 627 1314 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 67 - g - = - ML 69 68 3 71 3 8 26 622 1310 -16.077 -0.001 -10.308 0.574 -0.215 0.599 -2.893 D 70 68 3 71 3 3 21 619 1307 -19.741 -4.576 -0.062 IL 71 71 3 71 3 8 27 626 1313 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 68 - G - = - ML 72 71 3 74 3 7 25 621 1309 -16.077 -0.000 -13.475 0.101 -0.590 1.154 -4.735 D 73 71 3 74 3 3 21 619 1307 -19.770 -0.696 -1.386 IL 74 74 3 74 3 7 26 625 1312 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 69 - C - = - ML 75 74 3 77 3 6 24 620 1308 -4.241 -0.078 -16.088 -4.539 1.407 -2.600 0.190 D 76 74 3 77 3 3 20 618 1305 -18.410 -0.058 -4.655 IL 77 77 3 77 3 8 27 638 1326 -0.094 -3.994 -25.806 0.000 0.000 0.000 0.000 [ MATL 26 ] 88 - G - + - ML 78 77 3 80 3 5 22 618 1305 -16.095 -0.009 -7.308 -1.353 -2.498 1.724 -2.972 D 79 77 3 80 3 1 16 611 1298 -13.856 -3.890 -0.101 IL 80 80 3 80 3 5 23 621 1309 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 89 - C - = - ML 81 80 3 83 3 5 22 617 1304 -16.086 -0.005 -8.052 -1.964 1.330 -0.301 -1.259 D 82 80 3 83 3 1 16 610 1298 -18.798 -8.832 -0.003 IL 83 83 3 83 3 5 23 620 1308 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 90 - c - = - ML 84 83 3 86 3 5 22 616 1304 -16.080 -0.010 -7.125 -1.765 0.873 0.258 -0.560 D 85 83 3 86 3 1 16 610 1298 -19.451 -2.938 -0.202 IL 86 86 3 86 3 5 23 619 1307 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 91 - G - = - ML 87 86 3 89 3 5 22 615 1303 -7.129 -0.015 -8.234 -1.940 0.045 1.308 -2.109 D 88 86 3 89 3 1 16 610 1297 -20.094 -4.718 -0.056 IL 89 89 3 89 3 6 22 615 1303 -11.262 -0.001 -18.906 0.000 0.000 0.000 0.000 [ MATL 30 ] 93 - G - = - ML 90 89 3 92 3 5 21 614 1302 -16.068 -0.003 -8.897 -7.025 -1.090 1.814 -7.510 D 91 89 3 92 3 1 16 610 1297 -20.317 -10.351 -0.001 IL 92 92 3 92 3 5 22 618 1305 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 94 - c - = - ML 93 92 3 95 3 5 21 613 1301 -16.065 -0.005 -8.111 -0.451 0.730 0.606 -3.495 D 94 92 3 95 3 1 16 610 1297 -20.467 -2.030 -0.405 IL 95 95 3 95 3 5 21 617 1304 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 95 - C - + - ML 96 95 3 98 3 5 20 612 1300 -16.067 -0.005 -8.302 -6.763 1.783 -5.491 -0.921 D 97 95 3 98 3 0 15 609 1296 -20.356 -2.744 -0.233 IL 98 98 3 98 3 5 21 616 1303 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 96 - U - + - ML 99 98 3 101 3 6 19 611 1299 -16.067 -0.000 -16.067 -5.996 -5.011 -7.962 1.982 D 100 98 3 101 3 0 15 608 1296 -20.374 -2.535 -0.273 IL 101 101 3 101 3 5 20 615 1302 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 97 - c - * - ML 102 101 3 104 3 5 18 610 1298 -16.072 -0.001 -10.859 -0.639 0.571 -0.023 -0.170 D 103 101 3 104 3 0 15 608 1295 -20.103 -2.107 -0.381 IL 104 104 3 104 3 4 19 614 1301 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 98 - a - * - ML 105 104 3 107 3 4 17 609 1297 -8.130 -0.005 -16.076 0.358 0.008 -0.276 -0.172 D 106 104 3 107 3 0 15 607 1295 -19.782 -1.315 -0.742 IL 107 107 3 107 3 4 17 610 1298 -1.000 -1.000 -18.907 0.000 0.000 0.000 0.000 [ MATL 36 ] 101 - u - * - ML 108 107 3 110 3 3 16 608 1296 -16.084 -0.000 -16.084 -0.072 -0.317 -0.182 0.448 D 109 107 3 110 3 0 14 607 1294 -19.043 -0.005 -8.077 IL 110 110 3 110 3 1 15 611 1298 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 102 - A - + - ML 111 110 3 113 3 2 15 607 1295 -1.840 -0.472 -16.095 1.001 -7.088 0.985 -6.364 D 112 110 3 113 3 0 8 384 1042 -11.551 -1.585 -0.585 IL 113 113 3 113 3 3 18 654 1341 -0.039 -5.241 -29.462 0.000 0.000 0.000 0.000 [ MATL 38 ] 179 - A - + - ML 114 113 3 116 3 1 13 372 795 -16.095 -0.016 -6.477 1.609 -0.899 -1.766 -3.072 D 115 113 3 116 3 0 8 369 792 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 14 375 799 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 180 - g - = - ML 117 116 3 119 3 3 14 371 794 -16.079 -0.000 -16.079 -3.480 0.602 0.723 -0.430 D 118 116 3 119 3 0 8 367 791 -19.587 -5.010 -0.045 IL 119 119 3 119 3 1 14 374 798 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 181 - C - = - ML 120 119 3 122 3 2 13 370 793 -6.807 -0.013 -16.079 -13.487 1.791 -1.084 -3.910 D 121 119 3 122 3 0 8 367 790 -19.544 -3.712 -0.115 IL 122 122 3 122 3 2 13 370 793 -11.592 -0.000 -19.236 0.000 0.000 0.000 0.000 [ MATL 41 ] 183 - C - = - ML 123 122 3 125 3 1 12 369 792 -16.081 -0.001 -10.131 -2.185 1.310 0.058 -1.949 D 124 122 3 125 3 0 8 367 790 -19.431 -2.805 -0.223 IL 125 125 3 125 3 1 13 373 796 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 184 - g - = - ML 126 125 3 128 3 2 11 368 791 -16.081 -0.000 -12.432 -0.634 0.194 0.885 -1.455 D 127 125 3 128 3 0 8 367 790 -19.348 -9.383 -0.002 IL 128 128 3 128 3 1 12 372 795 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 185 - G - = - ML 129 128 3 131 3 2 10 367 790 -16.081 -0.000 -16.081 -1.485 -1.382 1.364 -0.547 D 130 128 3 131 3 0 8 367 790 -19.373 -2.476 -0.286 IL 131 131 3 131 3 1 11 371 794 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 186 - A - + - ML 132 131 3 134 3 1 9 366 789 -5.361 -0.228 -3.033 1.172 -1.909 -2.094 0.317 D 133 131 3 134 3 0 8 367 790 -19.090 -2.497 -0.281 IL 134 134 3 134 3 2 10 375 798 -0.170 -3.170 -23.858 0.000 0.000 0.000 0.000 [ MATL 45 ] 196 - G - + - ML 135 134 3 137 3 1 9 364 787 -15.898 -3.028 -0.189 -2.109 -1.645 1.651 -1.695 D 136 134 3 137 3 0 8 368 791 -23.092 -0.419 -1.989 IL 137 137 3 137 3 1 12 374 797 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 197 - G - = - ML 138 137 3 140 3 1 10 369 793 -13.791 -0.003 -9.080 -0.924 -0.405 1.326 -2.252 D 139 137 3 140 3 0 8 362 785 -25.735 -4.892 -0.049 IL 140 140 3 140 3 1 11 373 796 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 198 - g - = - ML 141 140 3 143 3 1 9 368 792 -13.968 -0.084 -4.147 -0.393 0.243 0.841 -1.925 D 142 140 3 143 3 0 8 362 785 -25.686 -15.720 -0.000 IL 143 143 3 143 3 1 10 372 795 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 199 - C - = - ML 144 143 3 146 3 1 9 368 791 -13.884 -0.663 -1.441 -2.480 1.219 -0.877 -0.077 D 145 143 3 146 3 0 8 362 785 -25.710 -7.349 -0.009 IL 146 146 3 146 3 1 11 373 797 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 200 - C - = - ML 147 146 3 149 3 1 10 369 792 -13.272 -0.037 -5.291 -3.356 1.458 -0.627 -0.977 D 148 146 3 149 3 0 8 362 785 -25.841 -5.965 -0.023 IL 149 149 3 149 3 1 10 373 796 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 201 - C - = - ML 150 149 3 152 3 1 9 368 791 -13.372 -0.769 -1.276 -3.332 1.577 -4.092 -0.219 D 151 149 3 152 3 0 8 362 785 -25.824 -9.089 -0.003 IL 152 152 3 152 3 1 11 375 798 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 202 - g - = - ML 153 152 3 155 3 1 10 370 794 -12.628 -0.025 -5.869 -3.364 0.879 0.954 -2.970 D 154 152 3 155 3 0 8 362 785 -25.924 -9.048 -0.003 IL 155 155 3 155 3 1 10 374 797 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 203 - c - = - ML 156 155 3 158 3 1 9 369 793 -2.082 -0.606 -3.224 0.029 0.636 0.414 -3.435 D 157 155 3 158 3 0 8 362 785 -25.924 -2.665 -0.248 IL 158 158 3 158 3 4 13 376 799 -0.193 -3.000 -23.514 0.000 0.000 0.000 0.000 [ MATL 53 ] 212 - G - + - ML 159 158 3 161 3 1 11 366 790 -13.939 -0.000 -13.939 -2.658 -3.502 1.361 0.244 D 160 158 3 161 3 0 8 361 784 -25.695 -9.500 -0.002 IL 161 161 3 161 3 1 11 370 793 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 213 - u - + - ML 162 161 3 164 3 1 10 365 789 -13.945 -0.000 -13.945 -0.396 0.385 -2.411 0.804 D 163 161 3 164 3 0 8 361 784 -25.693 -8.658 -0.004 IL 164 164 3 164 3 1 10 369 792 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 214 - A - + - ML 165 164 3 167 3 1 9 364 788 -13.958 -0.292 -2.447 1.057 -0.183 -2.195 -0.286 D 166 164 3 167 3 0 8 361 784 -25.689 -7.132 -0.010 IL 167 167 3 167 3 1 10 368 792 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 215 - A - + - ML 168 167 3 170 3 1 9 364 787 -4.644 -1.194 -0.936 1.095 -1.859 0.406 -1.924 D 169 167 3 170 3 0 8 361 784 -25.755 -4.569 -0.062 IL 170 170 3 170 3 2 10 367 790 -1.328 -0.733 -19.759 0.000 0.000 0.000 0.000 [ MATL 57 ] 219 - u - = - ML 171 170 3 173 3 1 9 365 788 -13.098 -0.480 -1.822 -1.060 -0.993 0.377 0.782 D 172 170 3 173 3 0 8 360 784 -25.868 -8.816 -0.003 IL 173 173 3 173 3 1 11 370 793 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 220 - g - = - ML 174 173 3 176 3 1 9 365 788 -12.649 -0.048 -4.933 -2.915 -0.608 0.914 0.408 D 175 173 3 176 3 0 8 360 784 -25.922 -3.850 -0.104 IL 176 176 3 176 3 1 11 369 792 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 221 - G - = - ML 177 176 3 179 3 1 9 364 788 -13.375 -0.030 -5.615 -0.204 -3.809 1.567 -3.350 D 178 176 3 179 3 0 8 360 783 -25.824 -8.892 -0.003 IL 179 179 3 179 3 1 11 368 791 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 222 - G - = - ML 180 179 3 182 3 1 9 363 787 -13.362 -0.024 -5.912 0.032 -1.174 1.288 -3.441 D 181 179 3 182 3 0 8 360 783 -25.826 -3.352 -0.149 IL 182 182 3 182 3 1 11 367 790 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 223 - G - = - ML 183 182 3 185 3 1 9 362 786 -13.982 -0.000 -13.982 -0.131 -1.253 1.258 -1.863 D 184 182 3 185 3 0 8 360 783 -25.682 -7.917 -0.006 IL 185 185 3 185 3 1 10 366 789 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 224 - c - = - ML 186 185 3 188 3 1 8 361 785 -14.001 -0.161 -3.248 -1.530 0.381 0.201 0.265 D 187 185 3 188 3 0 8 360 783 -25.676 -10.153 -0.001 IL 188 188 3 188 3 1 9 365 788 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 225 - c - = - ML 189 188 3 191 3 1 7 360 784 -13.846 -0.122 -3.631 -2.199 0.971 0.295 -0.749 D 190 188 3 191 3 0 8 360 783 -25.720 -0.008 -7.493 IL 191 191 3 191 3 1 9 364 788 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 226 - g - + - ML 192 191 3 194 3 1 9 360 783 -0.394 -2.075 -9.002 0.545 -3.474 0.867 -0.672 D 193 191 3 194 3 0 3 355 779 -20.512 -8.808 -0.003 IL 194 194 3 194 3 2 9 359 782 -3.598 -0.124 -25.760 0.000 0.000 0.000 0.000 [ MATL 65 ] 230 - C - + - ML 195 194 3 197 3 1 7 358 781 -16.061 -0.025 -5.846 -2.127 1.843 -5.622 -2.624 D 196 194 3 197 3 0 3 355 779 -20.632 -0.880 -1.131 IL 197 197 3 197 3 1 9 362 785 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 231 - c - = - ML 198 197 3 200 3 1 9 357 780 -16.055 -0.001 -11.547 -2.841 0.958 0.490 -0.962 D 199 197 3 200 3 0 3 353 776 -20.881 -2.033 -0.404 IL 200 200 3 200 3 1 9 361 784 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 233 - c - = - ML 201 200 3 203 3 1 8 356 779 -16.064 -0.021 -6.132 -1.358 0.952 -0.108 -0.419 D 202 200 3 203 3 0 3 352 775 -20.499 -2.455 -0.290 IL 203 203 3 203 3 1 9 360 783 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 234 - G - = - ML 204 203 3 206 3 1 10 355 778 -7.625 -0.007 -16.049 -2.679 -1.288 1.653 -1.784 D 205 203 3 206 3 0 2 351 774 -21.062 -0.927 -1.077 IL 206 206 3 206 3 1 10 355 778 -10.744 -0.001 -18.387 0.000 0.000 0.000 0.000 [ MATL 69 ] 236 - G - = - ML 207 206 3 209 3 1 9 354 777 -7.877 -0.006 -16.074 -2.397 -3.146 1.866 -4.282 D 208 206 3 209 3 0 2 347 771 -19.986 -8.333 -0.004 IL 209 209 3 209 3 1 10 354 777 -10.515 -0.001 -18.159 0.000 0.000 0.000 0.000 [ MATL 70 ] 238 - G - = - ML 210 209 3 212 3 1 9 353 776 -4.560 -0.063 -16.074 -5.271 -10.302 1.988 -7.449 D 211 209 3 212 3 0 2 347 771 -19.983 -3.494 -0.134 IL 212 212 3 212 3 1 10 356 779 -0.418 -1.992 -23.471 0.000 0.000 0.000 0.000 [ MATL 71 ] 245 - U - + - ML 213 212 3 215 3 1 9 352 775 -16.076 -0.000 -14.389 -6.194 -7.555 -10.576 1.993 D 214 212 3 215 3 0 2 347 770 -19.850 -7.424 -0.008 IL 215 215 3 215 3 1 7 355 779 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 246 - U - + - ML 216 215 3 218 3 1 8 351 774 -16.076 -0.000 -16.076 -11.914 -5.401 -12.021 1.991 D 217 215 3 218 3 0 2 347 770 -19.847 -9.881 -0.002 IL 218 218 3 218 3 1 7 354 778 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 247 - C - + - ML 219 218 3 221 3 1 7 350 773 -4.246 -0.078 -16.076 -7.112 1.993 -10.287 -6.627 D 220 218 3 221 3 0 2 347 770 -19.847 -0.042 -5.138 IL 221 221 3 221 3 1 8 366 789 -0.117 -3.687 -25.482 0.000 0.000 0.000 0.000 [ MATL 74 ] 264 - A - + - ML 222 221 3 224 3 1 6 347 771 -3.481 -0.135 -16.095 1.405 -10.336 0.433 -10.328 D 223 221 3 224 3 0 0 237 611 -14.762 -4.796 -0.053 IL 224 224 3 224 3 1 7 401 825 -0.063 -4.555 -27.134 0.000 0.000 0.000 0.000 [ MATL 75 ] 297 - A - + - ML 225 224 3 227 3 1 5 295 661 -4.478 -0.066 -16.095 1.969 -7.896 -3.783 -7.113 D 226 224 3 227 3 0 0 214 574 -14.762 -4.796 -0.053 IL 227 227 3 227 3 1 6 346 714 -0.074 -4.322 -25.904 0.000 0.000 0.000 0.000 [ MATL 76 ] 318 - A - + - ML 228 227 3 230 3 1 4 278 638 -3.949 -0.097 -16.095 1.836 -4.676 -2.436 -2.276 D 229 227 3 230 3 0 0 131 490 -14.762 -0.934 -1.069 IL 230 230 3 230 3 1 5 331 690 -0.074 -4.324 -26.435 0.000 0.000 0.000 0.000 [ MATL 77 ] 343 - U - + - ML 231 230 3 233 3 1 3 48 114 -16.095 -0.019 -6.256 -6.400 -3.120 -3.535 1.921 D 232 230 3 233 3 0 0 44 111 -13.798 -3.832 -0.105 IL 233 233 3 233 3 1 3 76 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 344 - C - = - ML 234 233 3 236 3 1 4 47 112 -8.091 -0.008 -8.971 -7.533 1.983 -13.125 -4.580 D 235 233 3 236 3 0 0 41 107 -19.826 -7.626 -0.007 IL 236 236 3 236 3 1 5 47 112 -10.303 -0.001 -17.947 0.000 0.000 0.000 0.000 [ MATL 79 ] 346 - C - = - ML 237 236 3 239 3 1 4 46 111 -16.073 -0.000 -13.855 -4.483 1.848 -3.025 -2.112 D 238 236 3 239 3 0 0 41 107 -20.019 -10.053 -0.001 IL 239 239 3 239 3 1 3 74 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 80 ] 347 - C - = - ML 240 239 3 242 3 1 3 45 110 -16.073 -0.008 -7.425 -1.958 1.675 -1.037 -4.013 D 241 239 3 242 3 0 0 41 107 -20.024 -10.058 -0.001 IL 242 242 3 242 3 1 3 73 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 81 ] 348 - G - = - ML 243 242 3 245 3 1 2 44 109 -6.296 -0.034 -6.593 -0.364 -0.441 1.136 -1.793 D 244 242 3 245 3 0 0 41 107 -20.483 -8.240 -0.005 IL 245 245 3 245 3 1 2 52 112 -0.585 -1.585 -21.318 0.000 0.000 0.000 0.000 [ MATL 82 ] 352 - G - = - ML 246 245 3 248 3 1 1 42 108 -6.550 -0.018 -9.455 -1.508 0.288 1.080 -1.672 D 247 245 3 248 3 0 0 41 107 -21.050 -0.001 -10.084 IL 248 248 3 248 3 1 3 43 109 -1.000 -1.000 -20.463 0.000 0.000 0.000 0.000 [ MATL 83 ] 356 - C - = - ML 249 248 3 251 3 1 2 41 107 -16.093 -0.000 -16.093 -2.523 1.769 -6.099 -1.313 D 250 248 3 251 3 0 0 33 102 -16.590 -6.625 -0.015 IL 251 251 3 251 3 1 1 70 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 84 ] 357 - C - = - ML 252 251 3 254 3 1 1 40 105 -6.257 -0.019 -12.570 -2.552 1.028 0.721 -2.808 D 253 251 3 254 3 0 0 32 101 -16.590 -6.625 -0.015 IL 254 254 3 254 3 1 2 48 109 -0.585 -1.585 -21.385 0.000 0.000 0.000 0.000 [ MATL 85 ] 361 - G - = - ML 255 254 3 257 3 1 1 35 104 -7.740 -0.009 -9.354 -2.538 0.376 1.145 -1.651 D 256 254 3 257 3 0 0 32 101 -16.736 -6.770 -0.013 IL 257 257 3 257 3 1 2 35 104 -10.671 -0.001 -18.315 0.000 0.000 0.000 0.000 [ MATL 86 ] 363 - c - = - ML 258 257 3 260 3 1 1 34 103 -16.091 -0.000 -16.091 -2.768 0.840 0.827 -1.792 D 259 257 3 260 3 0 0 32 101 -17.714 -0.984 -1.016 IL 260 260 3 260 3 1 1 67 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 87 ] 364 - g - = - ML 261 260 3 263 3 1 1 32 101 -16.093 -0.000 -16.093 -2.585 0.565 0.926 -1.139 D 262 260 3 263 3 0 0 31 101 -16.711 -0.124 -3.601 IL 263 263 3 263 3 1 1 66 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 88 ] 365 - C - = - ML 264 263 3 266 3 1 1 31 100 -16.095 -0.000 -16.095 -4.612 1.065 0.880 -5.244 D 265 263 3 266 3 0 0 33 103 -13.265 -0.328 -2.299 IL 266 266 3 266 3 1 1 65 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 89 ] 366 - C - = - ML 267 266 3 269 3 1 1 29 98 -16.095 -0.000 -14.758 -5.282 1.732 -2.641 -1.023 D 268 266 3 269 3 0 0 35 105 -11.551 -1.585 -0.585 IL 269 269 3 269 3 1 1 64 133 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 90 ] 367 - A - + - ML 270 269 3 272 3 1 1 27 96 -16.095 -1.070 -0.933 1.249 -2.630 0.061 -1.256 D 271 269 3 272 3 0 0 33 102 -12.145 -2.179 -0.360 IL 272 272 3 272 3 1 1 64 133 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 91 ] 368 - C - * - ML 273 272 3 275 3 1 1 28 97 -15.025 -0.000 -15.025 -12.423 1.888 -12.805 -1.742 D 274 272 3 275 3 0 0 2 69 -25.128 -15.162 -0.000 IL 275 275 3 275 3 1 1 63 132 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 92 ] 369 - C - * - ML 276 275 3 278 3 1 1 24 93 -15.025 -0.000 -15.025 -13.074 2.000 -13.131 -13.479 D 277 275 3 278 3 0 0 1 66 -25.128 -15.162 -0.000 IL 278 278 3 278 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 93 ] 370 - A - * - ML 279 278 3 281 2 1 1 1 1 * 0.000 1.994 -14.741 -5.920 -14.334 D 280 278 3 281 2 0 0 0 0 * 0.000 IL 281 281 3 281 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 94 ] - - - - - - E 282 281 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-042516 LENG 93 MAXL 646 ALPH RNA RF yes MM no CONS yes CS yes MAP no DATE Tue Apr 26 00:12:41 2016 COM [1] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto COM [2] cmbuild -F --enone --noss --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-ns-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto NSEQ 6998 EFFN 6998.000000 STATS LOCAL MSV -8.3518 0.71073 STATS LOCAL VITERBI -9.2557 0.71073 STATS LOCAL FORWARD -3.5152 0.71073 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65890 1.19275 1.12059 1.71380 1.38629 1.38629 1.38629 1.38629 0.00001 12.41082 11.42565 0.39730 1.11515 0.00000 * 1 2.08413 3.20662 0.18659 5.23912 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00202 11.15628 6.21320 1.46634 0.26236 1.09861 0.40547 2 5.28491 0.81836 0.64352 3.56339 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00495 11.15429 5.31376 1.46634 0.26236 4.95724 0.00706 3 3.24927 0.74516 0.82028 3.07410 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00849 5.15520 5.91853 0.00050 7.60175 3.08277 0.04692 4 2.71822 0.83474 0.78974 3.07785 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00873 4.74703 11.14699 0.00033 8.00817 1.49286 0.25454 5 2.58201 0.62972 1.10936 2.78274 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.14908 11.14908 1.46634 0.26236 0.02813 3.58493 6 3.26998 0.95376 0.65611 2.85012 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.15611 11.15611 1.46634 0.26236 2.70826 0.06898 7 2.41248 5.27540 0.13853 3.36231 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00268 11.15611 5.92815 1.46634 0.26236 1.32138 0.31029 8 6.68193 4.25975 4.52216 0.02660 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00290 11.15350 5.84914 1.46634 0.26236 5.28529 0.00508 9 0.53178 3.24731 1.10510 3.16095 - A + - : 1.38629 1.38629 1.38629 1.38629 0.01392 4.50504 5.89012 0.30272 1.34248 1.60777 0.22356 10 3.85173 3.18671 0.07291 4.85862 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01418 5.41750 4.64119 0.00065 7.33854 2.66784 0.07193 11 4.32031 0.60654 1.84184 1.26251 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00866 11.13982 4.75557 1.46634 0.26236 1.49947 0.25264 12 2.71642 0.98949 1.67883 0.97942 - u = - : 1.38629 1.38629 1.38629 1.38629 0.00024 11.13492 8.39554 1.46634 0.26236 0.94697 0.49089 13 2.95481 1.09813 2.01451 0.73182 - u = - : 1.38629 1.38629 1.38629 1.38629 0.01614 5.55446 4.41156 0.00075 7.19525 1.43819 0.27097 14 0.00868 5.26679 5.66264 11.75250 - A + - : 1.38629 1.38629 1.38629 1.38629 0.00935 4.67864 11.13405 0.00031 8.06368 1.18019 0.36704 15 3.68890 6.84508 0.03734 4.54772 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.14093 11.14093 1.46634 0.26236 0.95162 0.48795 16 3.25693 0.25239 4.12284 1.78167 - C + - : 1.38629 1.38629 1.38629 1.38629 0.31392 11.14688 1.31152 1.46634 0.26236 0.62755 0.76335 17 3.02538 0.22969 4.70616 1.91297 - C + - : 1.38629 1.38629 1.38629 1.38629 2.18937 0.12019 6.67535 0.00868 4.75104 0.00011 9.15848 18 6.62621 6.58287 0.00288 8.70819 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00523 5.28689 8.72194 0.00057 7.47582 4.19513 0.01518 19 6.04782 11.91257 0.00938 4.96689 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00169 11.15522 6.39515 1.46634 0.26236 1.90726 0.16074 20 1.39404 2.02674 3.70795 0.51812 - U + - : 1.38629 1.38629 1.38629 1.38629 0.86331 0.54779 11.15372 1.54354 0.24032 5.20465 0.00551 21 0.07980 5.20480 2.96200 3.93761 - A + - : 1.38629 1.38629 1.38629 1.38629 0.05894 3.34123 3.82385 0.13761 2.05132 0.01104 4.51150 22 1.43494 3.49310 0.65048 1.56222 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00055 11.13426 7.52977 1.46634 0.26236 0.79827 0.59803 23 0.98843 1.53507 0.97091 3.39143 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00080 11.14372 7.14526 1.46634 0.26236 3.17150 0.04285 24 1.31607 1.79514 0.58641 4.66808 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00010 11.14346 9.34009 1.46634 0.26236 0.48228 0.96070 25 4.53281 0.41111 3.18881 1.25487 - C = - : 1.38629 1.38629 1.38629 1.38629 0.05434 2.93975 11.15133 2.76845 0.06482 0.04051 3.22640 26 2.32418 3.11764 0.19114 3.44653 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00635 11.15611 5.06521 1.46634 0.26236 2.69636 0.06983 27 2.74747 0.46452 1.59462 2.25871 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00379 11.14979 5.58152 1.46634 0.26236 6.12171 0.00220 28 2.60944 0.78119 1.20725 1.77464 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00721 11.14603 4.93858 1.46634 0.26236 2.03647 0.13982 29 2.73077 1.35518 0.47967 2.84833 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01052 4.94172 5.70730 0.00041 7.80641 3.27044 0.03873 30 6.25581 2.14164 0.12869 6.59174 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00211 11.13749 6.16686 1.46634 0.26236 7.17459 0.00077 31 1.69920 0.88042 0.96658 3.80855 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00364 11.13540 5.62200 1.46634 0.26236 1.40725 0.28079 32 6.07395 0.15075 5.19206 2.02436 - C + - : 1.38629 1.38629 1.38629 1.38629 0.00319 11.13696 5.75458 1.46634 0.26236 1.90172 0.16171 33 5.54234 4.85932 6.90489 0.01276 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.13671 11.13671 1.46634 0.26236 1.75746 0.18933 34 1.82955 0.99080 1.40256 1.50387 - c * - : 1.38629 1.38629 1.38629 1.38629 0.00055 11.14011 7.52692 1.46634 0.26236 1.46034 0.26417 35 1.13838 1.38104 1.57745 1.50578 - a * - : 1.38629 1.38629 1.38629 1.38629 0.00359 5.63536 11.14336 0.69343 0.69286 0.91150 0.51403 36 1.43623 1.60624 1.51234 1.07546 - u * - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.14857 11.14857 1.46634 0.26236 0.00371 5.59883 37 0.69268 6.29967 0.70341 5.79760 - A + - : 1.38629 1.38629 1.38629 1.38629 0.32749 1.27563 11.15628 3.63290 0.02680 1.09861 0.40547 38 0.27096 2.00922 2.61017 3.51536 - A + - : 1.38629 1.38629 1.38629 1.38629 0.01130 11.15628 4.48978 1.46634 0.26236 1.09861 0.40547 39 3.79839 0.96889 0.88534 1.68463 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.14501 11.14501 1.46634 0.26236 3.47241 0.03153 40 10.73472 0.14453 2.13777 4.09660 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00898 4.71853 11.14534 0.00032 8.03505 2.57292 0.07938 41 2.90056 0.47804 1.34611 2.73706 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00091 11.14617 7.02214 1.46634 0.26236 1.94396 0.15448 42 1.82569 1.25206 0.77258 2.39515 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00020 11.14674 8.61731 1.46634 0.26236 6.50354 0.00150 43 2.41559 2.34408 0.44064 1.76537 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.14657 11.14657 1.46634 0.26236 1.71597 0.19819 44 0.57386 2.70974 2.83751 1.16627 - A + - : 1.38629 1.38629 1.38629 1.38629 0.15837 3.71584 2.10265 2.19721 0.11779 1.73082 0.19497 45 2.84826 2.52670 0.24217 2.56126 - G + - : 1.38629 1.38629 1.38629 1.38629 2.09914 11.01968 0.13077 1.46634 0.26236 0.29035 1.37832 46 2.02695 1.66690 0.46687 2.94748 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00192 9.55909 6.29375 1.46634 0.26236 3.39092 0.03426 47 1.65848 1.21779 0.80325 2.72089 - g = - : 1.38629 1.38629 1.38629 1.38629 0.05819 9.68203 2.87417 1.46634 0.26236 10.89633 0.00002 48 3.10553 0.54104 1.99428 1.43993 - C = - : 1.38629 1.38629 1.38629 1.38629 0.45927 9.62398 0.99916 1.46634 0.26236 5.09369 0.00615 49 3.71251 0.37594 1.82079 2.06323 - C = - : 1.38629 1.38629 1.38629 1.38629 0.02597 9.19945 3.66756 1.46634 0.26236 4.13484 0.01613 50 3.69557 0.29344 4.22274 1.53799 - C = - : 1.38629 1.38629 1.38629 1.38629 0.53291 9.26872 0.88429 1.46634 0.26236 6.30030 0.00184 51 3.71814 0.77730 0.72534 3.44470 - g = - : 1.38629 1.38629 1.38629 1.38629 0.01742 8.75335 4.06811 1.46634 0.26236 6.27155 0.00189 52 1.36611 0.94522 1.09905 3.76698 - c = - : 1.38629 1.38629 1.38629 1.38629 0.42032 1.44345 2.23445 2.07942 0.13353 1.84730 0.17158 53 3.22857 3.81351 0.44286 1.21700 - G + - : 1.38629 1.38629 1.38629 1.38629 0.00013 9.66152 9.66152 1.46634 0.26236 6.58491 0.00138 54 1.66101 1.11921 3.05778 0.82891 - u + - : 1.38629 1.38629 1.38629 1.38629 0.00013 9.66622 9.66622 1.46634 0.26236 6.00114 0.00248 55 0.65343 1.51338 2.90794 1.58479 - A + - : 1.38629 1.38629 1.38629 1.38629 0.20273 9.67464 1.69586 1.46634 0.26236 4.94327 0.00716 56 0.62726 2.67472 1.10521 2.71992 - A + - : 1.38629 1.38629 1.38629 1.38629 0.82729 3.21896 0.64862 0.50792 0.92066 3.16733 0.04303 57 2.12107 2.07483 1.12470 0.84451 - u = - : 1.38629 1.38629 1.38629 1.38629 0.33269 9.07893 1.26270 1.46634 0.26236 6.11091 0.00222 58 3.40668 1.80782 0.75277 1.10329 - g = - : 1.38629 1.38629 1.38629 1.38629 0.03345 8.76778 3.41926 1.46634 0.26236 2.66896 0.07184 59 1.52795 4.02665 0.30019 3.70858 - G = - : 1.38629 1.38629 1.38629 1.38629 0.02072 9.27062 3.89179 1.46634 0.26236 6.16381 0.00211 60 1.36429 2.20024 0.49323 3.77175 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01684 9.26194 4.09782 1.46634 0.26236 2.32357 0.10306 61 1.47680 2.25482 0.51415 2.67752 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00012 9.69145 9.69145 1.46634 0.26236 5.48730 0.00415 62 2.44670 1.12218 1.24690 1.20245 - c = - : 1.38629 1.38629 1.38629 1.38629 0.11125 9.70506 2.25164 1.46634 0.26236 7.03777 0.00088 63 2.91084 0.71316 1.18195 1.90516 - c = - : 1.38629 1.38629 1.38629 1.38629 0.08422 9.59708 2.51695 1.46634 0.26236 0.00557 5.19348 64 1.00870 3.79402 0.78557 1.85188 - g + - : 1.38629 1.38629 1.38629 1.38629 1.43855 0.27341 6.23987 0.08617 2.49426 6.10507 0.00223 65 2.86051 0.10854 5.28330 3.20533 - C + - : 1.38629 1.38629 1.38629 1.38629 0.01756 11.13283 4.05190 1.46634 0.26236 0.60985 0.78402 66 3.35544 0.72207 1.04681 2.05335 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00035 11.12835 8.00409 1.46634 0.26236 1.40934 0.28012 67 2.32734 0.72662 1.46123 1.67690 - c = - : 1.38629 1.38629 1.38629 1.38629 0.01438 11.13492 4.25014 1.46634 0.26236 1.70171 0.20135 68 3.24306 2.27902 0.24083 2.62285 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00509 5.28495 11.12455 0.00058 7.44688 0.64228 0.74674 69 3.04796 3.56721 0.09270 4.35463 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00428 5.45974 11.14138 0.00068 7.28854 5.77625 0.00311 70 5.03971 8.52690 0.00814 6.54979 - G = - : 1.38629 1.38629 1.38629 1.38629 0.04333 3.16080 11.14141 1.38052 0.28961 2.42195 0.09294 71 5.67970 6.62333 8.71682 0.00492 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00006 11.14272 9.97351 1.46634 0.26236 5.14598 0.00584 72 9.64441 5.13006 9.71844 0.00606 - U + - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.14276 11.14276 1.46634 0.26236 6.84903 0.00106 73 6.31618 0.00455 8.51670 5.97969 - C + - : 1.38629 1.38629 1.38629 1.38629 0.05415 2.94329 11.14276 2.55557 0.08083 0.02881 3.56143 74 0.41239 8.55066 1.08606 8.54477 - A + - : 1.38629 1.38629 1.38629 1.38629 0.09383 2.41295 11.15592 3.15761 0.04346 3.32426 0.03666 75 0.02124 6.85957 4.00826 6.31637 - A + - : 1.38629 1.38629 1.38629 1.38629 0.04592 3.10398 11.15592 2.99572 0.05129 3.32426 0.03666 76 0.11381 4.62754 3.07486 2.96421 - A + - : 1.38629 1.38629 1.38629 1.38629 0.06696 2.73711 11.15592 2.99686 0.05123 0.64768 0.74078 77 5.82225 3.54873 3.83666 0.05476 - U + - : 1.38629 1.38629 1.38629 1.38629 0.01319 11.15612 4.33615 1.46634 0.26236 2.65627 0.07280 78 6.60747 0.01190 10.48397 4.56069 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00568 5.60791 6.21793 0.00079 7.14156 5.28602 0.00507 79 4.49390 0.10505 3.48272 2.85049 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00008 11.14103 9.60328 1.46634 0.26236 6.96809 0.00094 80 2.74381 0.22524 2.10480 4.16808 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00585 11.14098 5.14682 1.46634 0.26236 6.97152 0.00094 81 1.63863 1.69219 0.59871 2.62944 - G = - : 1.38629 1.38629 1.38629 1.38629 0.02335 4.36426 4.56981 1.09864 0.40545 5.71176 0.00331 82 2.43146 1.18682 0.63781 2.54525 - G = - : 1.38629 1.38629 1.38629 1.38629 0.01217 4.54042 6.55348 0.69324 0.69305 0.00092 6.98986 83 3.13507 0.15988 5.61365 2.29655 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.15491 11.15491 1.46634 0.26236 4.59182 0.01019 84 3.15517 0.67393 0.88681 3.33258 - C = - : 1.38629 1.38629 1.38629 1.38629 0.01333 4.33711 8.71281 1.09864 0.40545 4.59182 0.01019 85 3.14518 1.12550 0.59268 2.53064 - G = - : 1.38629 1.38629 1.38629 1.38629 0.00622 5.36511 6.48379 0.00061 7.39682 4.69291 0.00920 86 3.30507 0.80404 0.81282 2.62857 - c = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.15324 11.15324 1.46634 0.26236 0.68228 0.70413 87 3.17780 0.99478 0.74443 2.17585 - g = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.15479 11.15479 1.46634 0.26236 0.08600 2.49611 88 4.58329 0.64819 0.77612 5.02109 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00003 11.15618 11.15618 1.46634 0.26236 0.22714 1.59362 89 5.04743 0.18578 3.21684 2.09530 - C = - : 1.38629 1.38629 1.38629 1.38629 0.00005 11.15628 10.22924 1.46634 0.26236 1.09861 0.40547 90 0.52059 3.20958 1.34404 2.25699 - A + - : 1.38629 1.38629 1.38629 1.38629 0.74193 11.15626 0.64666 1.46634 0.26236 1.51006 0.24961 91 9.99718 0.07777 10.26174 2.59376 - C * - : 1.38629 1.38629 1.38629 1.38629 0.00006 10.41439 10.41439 1.46634 0.26236 10.50969 0.00003 92 10.44849 0.00008 10.48828 10.72903 - C * - : 1.38629 1.38629 1.38629 1.38629 0.00006 10.41439 10.41439 1.46634 0.26236 10.50969 0.00003 93 0.00416 11.60426 5.48951 11.32163 - A * - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-His.cm0000644000543100007160000017242412573631650021134 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME His-2nd-align STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone His-final-vert.cm ../His-2nd-align.sto COM [2] cmcalibrate --seed 208 His-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 1206518900 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.4742 0.71865 ECMLC 0.60779 -7.62876 2.25245 1600000 486895 0.002465 ECMGC 0.26792 -43.30944 -25.89869 1600000 42454 0.009422 ECMLI 0.61834 -6.93864 2.65596 1600000 452635 0.002651 ECMGI 0.28219 -39.47172 -23.01720 1600000 41556 0.009626 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 124 -15.012 -16.257 -0.024 -5.940 IL 1 1 2 1 4 21 43 100 125 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 22 44 100 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 106 - C - + MR 3 2 3 5 5 28 48 99 124 -15.037 -0.000 -14.853 -15.065 -15.956 -3.362 1.911 -5.118 -3.158 D 4 2 3 5 5 19 39 94 119 -9.757 -5.112 -7.384 -0.066 -6.809 IR 5 5 3 5 5 21 43 99 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 105 G C = = MP 6 5 3 10 6 28 47 98 123 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -13.769 -10.533 -15.598 -1.827 -15.471 -11.740 -9.830 -15.248 -4.542 3.968 -12.101 -5.294 -10.175 -12.190 -12.252 -14.482 ML 7 5 3 10 6 20 41 96 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 39 92 117 -11.509 -10.238 -6.146 -10.216 -0.028 -8.429 -0.757 -3.358 -4.132 1.702 D 9 5 3 10 6 17 37 93 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 21 42 97 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 42 97 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 104 U A = = MP 12 11 6 16 6 26 45 96 121 -15.971 -5.863 -0.025 -14.687 -14.967 -15.362 -13.023 -13.305 -12.341 -9.542 -3.980 -12.485 1.129 -11.606 -12.444 -9.514 -12.564 -11.710 3.759 -3.147 -3.358 -11.246 ML 13 11 6 16 6 19 40 94 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 18 38 91 116 -11.509 -10.238 -6.146 -10.216 -5.350 -0.060 1.982 -6.277 -5.665 -5.876 D 15 11 6 16 6 17 37 91 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 20 42 95 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 23 44 95 120 -6.099 -0.033 -9.610 -7.778 -8.884 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 a u = = MP 18 17 6 22 6 24 43 94 119 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -1.563 2.239 -2.900 2.859 -4.682 -9.032 -1.216 -3.612 -6.108 0.374 -8.852 -1.653 0.329 -8.318 -4.653 -3.878 ML 19 17 6 22 6 18 38 92 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 18 38 92 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 17 37 89 114 -14.101 -12.800 -8.597 -9.279 -9.296 -0.009 IL 22 22 5 22 6 20 40 93 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 41 93 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 a u = = MP 24 23 6 28 6 22 41 92 117 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -0.015 -0.238 -3.910 2.860 -2.698 -4.075 -1.665 -6.155 -9.669 2.116 -10.024 -0.877 0.361 -6.148 -4.747 -3.738 ML 25 23 6 28 6 17 37 90 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 17 37 90 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 17 37 89 114 -14.101 -12.800 -8.597 -9.279 -0.042 -5.372 IL 28 28 5 28 6 17 38 91 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 38 91 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 A U = = MP 30 29 6 34 6 20 39 90 115 -15.971 -15.911 -0.000 -14.687 -14.967 -15.362 -9.940 -0.821 -9.759 3.262 -5.412 -10.354 -3.171 -4.097 -1.774 2.111 -4.471 -0.822 -1.676 -4.036 -7.963 -4.567 ML 31 29 6 34 6 16 36 88 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 19 38 89 114 -11.509 -10.238 -0.043 -10.216 -5.350 -8.429 -5.426 -4.947 -6.267 1.975 D 33 29 6 34 6 13 32 86 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 89 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 89 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 U A = = MP 36 35 6 40 6 18 37 88 113 -15.995 -15.934 -0.001 -14.710 -11.434 -15.385 -10.295 -5.952 -5.984 -1.330 -2.155 -11.139 1.638 -5.199 -10.153 -2.264 -10.667 -7.564 3.483 -2.321 -1.375 -2.176 ML 37 35 6 40 6 16 35 87 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 35 86 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 32 85 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 87 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 36 87 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 98 A U = = MP 42 41 6 46 4 16 35 86 111 -15.217 -15.424 -0.000 -13.838 -11.860 -2.861 -11.991 3.762 -13.873 -14.261 -3.128 -12.135 -11.681 0.688 -12.296 -2.079 -1.972 -4.166 -11.092 -5.926 ML 43 41 6 46 4 15 34 86 111 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 33 85 110 -5.414 -4.443 -0.878 -1.371 -0.211 -0.511 -0.833 0.905 D 45 41 6 46 4 13 32 84 109 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 35 87 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 34 86 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 14 33 84 109 -16.127 -0.000 -14.781 -5.690 -5.377 -10.281 1.984 D 49 47 6 50 3 13 32 82 107 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 33 85 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 13 32 83 108 -16.782 -0.000 1.986 -12.001 -4.709 -11.379 D 52 50 3 53 2 12 31 82 107 -8.445 -0.004 IL 53 53 3 53 2 14 32 83 109 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 31 82 107 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 41 59 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 41 59 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 22 41 -0.000 -14.122 -13.529 -14.170 [ MATP 15 ] 10 27 G C = = MP 58 57 1 62 6 2 3 22 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.922 -4.542 -13.516 0.639 -14.996 -12.323 -9.842 -13.493 -2.891 3.585 -12.232 1.179 -10.026 -12.549 -12.028 -12.155 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 U A = = MP 64 63 6 68 6 2 3 20 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.045 -13.319 -12.364 -2.907 -10.716 -12.510 -3.400 -11.630 -12.467 -9.530 -12.588 -11.710 3.967 -12.881 -2.924 -11.269 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A = = MP 70 69 6 74 6 2 3 18 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -6.278 -12.508 -1.712 -11.630 -12.468 -9.537 -12.588 -11.733 3.860 -2.888 0.038 -11.270 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 2 16 35 -15.218 -15.425 -0.002 -9.542 -5.609 -13.317 -4.310 -3.085 -10.716 -12.510 -3.321 -3.468 -12.466 -9.529 -12.587 -11.706 3.945 -12.881 -2.245 -11.269 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 14 32 -16.125 -0.000 -14.779 1.857 -2.844 -5.397 -2.221 D 83 81 6 84 3 0 0 16 34 -8.303 -3.816 -0.111 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 12 31 -16.125 -0.352 -2.209 1.849 -3.630 -2.497 -2.836 D 86 84 3 87 3 0 0 15 33 -8.303 -3.816 -0.111 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 11 30 -15.774 -1.237 -0.797 0.368 0.804 -9.014 -0.056 D 89 87 3 90 3 0 0 10 29 -15.346 -10.859 -0.001 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - + - ML 91 90 3 93 3 1 1 10 29 -4.622 -7.640 -0.067 -10.631 1.020 -11.825 0.979 D 92 90 3 93 3 0 0 10 28 -16.964 -1.545 -0.606 IL 93 93 3 93 3 1 1 12 30 -4.759 -0.063 -7.459 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 11 29 -14.093 -0.000 -12.747 1.435 -8.987 0.370 -8.903 D 95 93 3 96 3 0 0 9 27 -17.143 -0.567 -1.622 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - + - ML 97 96 3 99 3 1 1 9 27 -15.721 -3.031 -0.188 1.329 -0.502 -2.023 -0.899 D 98 96 3 99 3 0 0 8 26 -15.522 -11.035 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - C - + - ML 100 99 3 102 3 1 1 7 13 -2.938 -0.202 -11.345 -7.349 1.477 -8.391 0.271 D 101 99 3 102 3 0 0 3 9 -17.407 -0.001 -10.018 IL 102 102 3 102 3 1 1 7 12 -4.614 -0.070 -7.314 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.900 -1.903 -11.412 -10.997 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 26 45 -5.664 -0.029 -14.876 -15.088 -15.980 1.677 -2.499 -0.917 -3.369 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 44 -6.298 -0.029 -7.977 -9.809 -9.082 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 47 U A = = MP 112 111 3 116 6 2 2 25 43 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -5.069 -10.665 -5.095 -3.990 -1.060 -4.868 1.893 -4.416 -2.030 -6.288 -11.187 -8.273 3.455 -3.676 -1.954 -4.754 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 46 U A = = MP 118 117 6 122 6 2 2 23 41 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.047 -13.329 -12.364 -9.565 -3.578 -12.508 0.909 -4.470 -12.468 -9.537 -12.588 -11.733 3.759 -12.881 -1.328 -4.317 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 45 A U = = MP 124 123 6 128 6 2 2 21 39 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -1.879 -3.844 -12.232 3.887 -3.166 -15.528 -9.831 -12.275 -11.792 -0.502 -12.462 -4.675 -9.756 -13.537 -11.662 -10.830 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 44 G C = = MP 130 129 6 134 6 2 2 19 37 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.380 -2.614 -14.405 -0.458 -15.259 -1.669 -9.834 -14.299 -11.896 3.869 -12.162 -3.345 -10.114 -12.329 -12.156 -3.618 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 43 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -3.267 0.073 -2.403 3.532 -10.094 -4.800 -2.658 -3.421 -9.719 0.163 -10.070 -0.651 -0.698 -2.222 -2.722 -4.044 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 14 32 -16.127 -0.000 -14.781 -3.769 0.155 -9.731 1.492 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -5.695 -2.960 -9.916 1.945 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -12.067 -11.343 -5.350 1.991 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - * - ML 154 153 3 156 3 1 1 8 27 -16.127 -0.000 -14.781 -10.652 -12.409 2.000 -11.399 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.398 -0.017 -14.781 1.747 -11.075 -0.637 -10.974 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 7 12 -4.592 -0.071 -7.292 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - u - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.423 -0.622 -2.451 0.869 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 50 75 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 5 52 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 5 50 75 -16.127 -0.000 -14.781 1.496 -0.611 -4.713 -1.039 D 167 165 2 168 3 0 3 48 74 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 4 49 74 -16.782 -0.000 1.499 -2.733 -0.076 -3.735 D 170 168 3 171 2 0 3 48 73 -8.445 -0.004 IL 171 171 3 171 2 1 4 50 75 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 48 73 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 37 63 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 39 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - A - + - ML 231 230 2 233 3 1 3 37 63 -5.000 -0.046 -14.781 1.904 -5.420 -4.662 -2.363 D 232 230 2 233 3 0 0 35 61 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 37 63 -5.887 -0.028 -8.587 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - U - + - ML 234 233 3 236 5 1 3 36 62 -15.061 -0.000 -14.876 -15.088 -15.980 -2.890 0.315 -5.987 1.382 D 235 233 3 236 5 0 0 34 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 36 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 97 A U = = MP 237 236 3 241 6 2 3 35 61 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -4.242 -2.865 -12.232 3.740 -14.373 -15.526 -9.830 -3.235 -11.792 0.373 -12.462 -0.093 -3.257 -13.537 -11.661 -10.830 ML 238 236 3 241 6 1 1 33 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 34 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 96 G C = = MP 243 242 6 247 6 2 3 33 59 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.273 -2.211 -14.736 1.463 -15.035 -4.251 -9.553 -14.809 -11.863 3.652 -12.069 -2.285 -9.887 -3.388 -11.889 -13.683 ML 244 242 6 247 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 33 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 29 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 32 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 95 A U = = MP 249 248 6 253 6 2 2 31 57 -6.034 -15.934 -0.057 -14.710 -14.990 -5.432 -3.665 -0.167 -12.225 3.019 -14.356 -15.468 -9.808 -12.271 -11.789 2.655 -12.457 -1.266 -9.738 -13.513 -11.642 -2.260 ML 250 248 6 253 6 1 1 29 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 28 54 -6.806 -7.069 -4.987 -0.076 -9.500 -9.160 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 94 A U = = MP 255 254 6 259 6 2 2 29 55 -15.938 -15.877 -0.135 -4.205 -5.389 -6.474 -4.206 -0.508 -10.085 3.143 -11.252 -4.781 -3.326 -10.732 -10.441 2.613 -10.720 -3.681 -6.583 -4.117 -8.330 -9.029 ML 256 254 6 259 6 1 1 27 52 -10.894 -11.240 -5.954 -0.029 -11.090 -8.619 1.981 -6.189 -5.583 -5.799 MR 257 254 6 259 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 23 49 -14.615 -13.313 -9.110 -9.793 -9.810 -0.006 IL 259 259 5 259 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 29 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 93 G C = = MP 261 260 6 265 4 2 2 24 46 -15.025 -15.232 -0.002 -9.708 -2.755 -0.524 -11.805 -2.017 -3.505 -12.032 -8.268 -12.144 -11.338 3.866 -11.733 -4.061 -3.443 -11.663 -3.526 -10.601 ML 262 260 6 265 4 1 1 26 51 -1.001 -10.262 -1.008 -8.991 1.215 0.521 -5.496 -2.170 MR 263 260 6 265 4 1 1 32 58 -10.023 -0.037 -6.919 -5.980 -6.148 1.982 -6.600 -5.251 D 264 260 6 265 4 0 0 21 47 -10.581 -10.262 -4.004 -0.095 IL 265 265 5 265 4 1 1 26 51 -1.581 -8.507 -0.594 -10.992 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 31 57 -1.012 -0.993 -9.126 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 1 22 44 -5.170 -0.041 -14.733 -0.419 -0.143 -4.770 1.208 D 268 266 6 269 3 0 0 16 37 -12.642 -0.869 -1.144 IL 269 269 3 269 3 1 1 25 47 -1.240 -0.799 -9.146 0.000 0.000 0.000 0.000 [ MATL 69 ] 82 - U - + - ML 270 269 3 272 3 1 1 16 31 -16.105 -0.002 -9.796 -4.235 -1.340 -2.670 1.763 D 271 269 3 272 3 0 0 15 33 -11.510 -0.935 -1.069 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 83 - A - + - ML 273 272 3 275 3 1 1 15 30 -16.115 -0.000 -14.769 1.266 -0.007 -3.380 -0.988 D 274 272 3 275 3 0 0 14 32 -10.660 -0.045 -5.052 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 84 - A - + - ML 276 275 3 278 3 1 1 14 29 -5.686 -0.062 -5.486 1.835 -3.180 -2.169 -3.314 D 277 275 3 278 3 0 0 12 29 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 14 29 -5.241 -0.045 -7.941 0.000 0.000 0.000 0.000 [ MATL 72 ] 86 - A - + - ML 279 278 3 281 3 1 1 13 28 -16.095 -0.004 -8.412 1.711 -1.712 -4.201 -1.450 D 280 278 3 281 3 0 0 10 29 -12.082 -7.595 -0.008 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 87 - A - + - ML 282 281 3 284 3 1 1 12 26 -4.799 -0.129 -4.328 1.108 0.231 -1.659 -1.496 D 283 281 3 284 3 0 0 7 21 -12.252 -1.715 -0.525 IL 284 284 3 284 3 1 1 14 28 -1.911 -0.449 -9.168 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.389 1.118 -3.498 0.443 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME His-2nd-align LENG 90 MAXL 166 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:53 2015 COM [1] cmbuild --hand --enone His-final-vert.cm ../His-2nd-align.sto NSEQ 1085 EFFN 8.927708 CKSUM 1206518900 STATS LOCAL MSV -8.8955 0.71865 STATS LOCAL VITERBI -9.4647 0.71865 STATS LOCAL FORWARD -3.5600 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.12385 1.65320 1.63430 1.24323 1.38629 1.38629 1.38629 1.38629 0.03136 4.71648 3.81986 1.46634 0.26236 0.00000 * 1 3.24438 4.56350 0.06256 4.48920 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 2 3.44151 1.55165 3.22523 0.33360 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 3 0.88692 1.82382 1.55351 1.53635 3 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 4 1.06736 1.88056 1.21402 1.57708 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 5 0.95703 2.36128 0.90812 2.13381 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 0.59658 0.80005 6 2.22570 1.32347 2.11479 0.68292 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01833 4.71648 4.68704 1.46634 0.26236 1.09861 0.40547 7 0.48323 2.93727 1.34149 2.67735 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01806 4.71621 4.71621 1.46634 0.26236 1.07908 0.41538 8 3.50671 3.35994 4.12731 0.08432 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 9 0.04173 4.62193 3.93285 4.47004 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 10 1.95785 3.20023 0.26080 3.04394 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 11 4.60744 3.35811 4.83828 0.05414 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 12 4.24978 2.77769 4.08356 0.09794 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 13 5.20426 4.44507 5.32251 0.02236 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01910 4.71648 4.60807 1.46634 0.26236 1.09861 0.40547 14 0.19391 2.81307 3.25246 2.55663 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01807 4.71545 4.71545 1.46634 0.26236 1.13607 0.38725 15 0.20423 2.97271 2.71413 2.69868 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.21303 4.71545 1.69874 1.46634 0.26236 1.13607 0.38725 16 1.21861 1.03476 2.60526 1.29039 16 c + - _ 1.38629 1.38629 1.38629 1.38629 0.61798 4.52434 0.79823 1.46634 0.26236 3.11523 0.04538 17 2.08332 0.96631 2.64769 0.85759 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.95007 3.15207 0.56120 0.74383 0.64491 1.07196 0.41906 18 0.65387 2.41488 1.35218 2.02558 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04674 3.77959 3.77959 1.46634 0.26236 0.41427 1.08123 19 0.68588 1.72789 2.16508 1.58985 20 A + - _ 1.38629 1.38629 1.38629 1.38629 1.15883 4.49647 0.39305 1.46634 0.26236 3.22181 0.04070 20 1.63537 1.00570 2.14771 1.13141 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.10785 2.67256 3.40628 0.78321 0.61053 0.02459 3.71750 21 0.12663 2.77751 3.64556 3.48531 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71598 4.71598 1.46634 0.26236 1.06273 0.42390 22 0.02735 5.47397 4.17429 4.90683 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 23 0.14510 4.01759 2.31736 3.98810 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 24 0.06581 4.96700 3.12453 4.36055 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 25 3.17721 0.40644 3.00136 1.41649 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 26 0.33778 2.60365 2.00766 2.54664 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.03432 3.69712 4.71648 0.61160 0.78194 1.09861 0.40547 27 2.17701 1.26897 2.03312 0.74534 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 28 3.45826 1.60765 3.23406 0.31641 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 29 0.03989 4.82297 3.79347 4.76261 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 30 1.98723 2.74512 0.31213 2.70604 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 31 0.85312 1.90952 1.48874 1.60889 34 a = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 32 2.68581 1.39074 3.41363 0.43075 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 33 3.32242 2.85715 3.90664 0.12059 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 34 4.23582 5.28474 0.02864 4.74423 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 35 3.49740 3.37962 3.80573 0.09056 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 36 4.23582 5.28474 0.02864 4.74423 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 37 0.23478 3.79812 1.83167 3.62318 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02780 3.99146 4.71648 0.78908 0.60562 1.09861 0.40547 38 1.15292 1.70519 2.23668 0.92700 42 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 39 1.84789 1.53926 1.68221 0.81661 43 u = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 40 3.01231 0.34082 2.70116 1.75731 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 41 4.72376 3.99205 4.77359 0.03645 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 42 0.36933 3.40511 1.46426 3.11569 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 43 0.80470 2.22954 1.17712 1.98752 47 a = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 44 0.49464 1.82137 2.74815 1.80571 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 45 0.45726 2.63933 1.53645 2.52035 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.72075 4.71648 0.20811 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 47 1.80291 1.30596 1.07732 1.49716 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 48 1.80050 1.30670 1.07822 1.49668 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 49 1.79941 1.30704 1.07863 1.49646 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 50 1.79897 1.30717 1.07879 1.49637 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 51 1.79885 1.30721 1.07884 1.49635 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 52 1.79889 1.30720 1.07883 1.49635 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 57 1.73016 1.22025 1.16214 1.53818 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 58 1.73009 1.22028 1.16217 1.53816 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 59 1.73010 1.22027 1.16216 1.53817 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 60 1.73027 1.22020 1.16210 1.53822 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 61 1.73072 1.22001 1.16193 1.53835 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 62 1.73167 1.21960 1.16159 1.53863 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.53016 0.01084 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02179 3.83702 64 0.13921 3.38796 3.33000 2.80701 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.04398 3.37910 4.71648 0.46164 0.99493 1.09861 0.40547 65 2.43670 1.27168 3.19534 0.52554 70 U + - , 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 66 0.36627 3.29974 1.48721 3.12832 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 67 1.59877 2.80468 0.40661 2.63911 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 68 0.95924 2.85442 0.72281 2.60585 73 g = - < 1.38629 1.38629 1.38629 1.38629 0.05018 3.85009 3.58778 0.69862 0.68771 1.09861 0.40547 69 0.97614 2.68955 0.73774 2.56220 75 g = - < 1.38629 1.38629 1.38629 1.38629 0.04710 4.69759 3.29977 1.46634 0.26236 1.62760 0.21865 70 1.82756 2.63086 0.38222 2.46711 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.04963 3.26458 4.58514 0.67538 0.71123 0.91630 0.51082 71 1.56274 1.49139 2.66053 0.70225 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04142 3.46153 4.68954 0.81353 0.58571 0.81825 0.58197 72 2.79819 2.19805 2.92387 0.25575 82 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01917 4.70445 4.61239 1.46634 0.26236 0.93270 0.50003 73 0.67434 1.51236 2.49481 1.67342 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01817 4.70996 4.70996 1.46634 0.26236 0.76937 0.62233 74 0.21498 2.88334 2.59302 2.76934 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05281 3.70642 3.61661 0.61659 0.77605 1.09861 0.40547 75 0.32354 2.32107 2.89805 2.09458 86 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02076 4.69839 4.47125 1.46634 0.26236 1.61019 0.22296 76 0.78262 1.40728 2.12335 1.72398 87 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09084 3.27357 3.01657 0.60589 0.78876 1.13642 0.38708 77 1.91681 0.78420 2.74113 1.10279 90 c + - _ 1.38629 1.38629 1.38629 1.38629 0.12159 3.53993 2.45953 0.92591 0.50447 0.42730 1.05632 78 2.69599 0.38970 2.51363 1.74705 93 C = - > 1.38629 1.38629 1.38629 1.38629 0.01968 4.63104 4.63104 1.46634 0.26236 0.59798 0.79833 79 2.82506 0.76706 2.51541 0.92763 94 c = - > 1.38629 1.38629 1.38629 1.38629 0.01864 4.68494 4.68494 1.46634 0.26236 0.36979 1.17402 80 2.91608 0.76080 2.65999 0.89499 95 c = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 81 2.89779 0.45054 2.63590 1.44427 96 C = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 82 3.27585 1.78253 3.22128 0.28223 97 U = - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 83 2.91922 1.45981 2.75701 0.43038 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 84 0.79056 2.22750 1.19592 1.99373 99 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 85 2.29919 1.00724 2.17802 0.86472 100 u = - ) 1.38629 1.38629 1.38629 1.38629 0.03136 4.71648 3.81986 1.46634 0.26236 1.09861 0.40547 86 1.64376 1.27587 1.69908 1.06505 101 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01829 4.70341 4.70341 1.46634 0.26236 1.49320 0.25445 87 1.69163 1.27255 1.62274 1.08380 102 u = - ) 1.38629 1.38629 1.38629 1.38629 0.03249 3.77648 4.70341 0.66290 0.72434 0.59658 0.80005 88 0.37296 3.25191 1.46123 3.20264 104 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01806 4.71648 4.71648 1.46634 0.26236 1.09861 0.40547 89 4.42832 0.07872 4.42438 2.96062 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03136 4.71648 3.81986 1.46634 0.26236 1.09861 0.40547 90 3.22918 0.12814 3.92075 2.79928 106 C + - : 1.38629 1.38629 1.38629 1.38629 0.00919 4.69430 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal0000644000543100007160000516324413054731246020303 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Ala STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:49:00 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Ala.sto COM [2] cmcalibrate --seed 208 Ala_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1278061781 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.6253 0.71868 ECMLC 0.73888 -5.94874 2.46417 1600000 600929 0.001997 ECMGC 0.32870 -50.69147 -35.84231 1600000 52700 0.007590 ECMLI 0.77609 -5.30966 2.65396 1600000 579859 0.002069 ECMGI 0.36506 -45.21656 -32.03312 1600000 49229 0.008125 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 118 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 18 39 100 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 40 100 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 24 48 99 118 -13.126 -0.001 -12.941 -13.153 -14.045 1.892 -9.349 -1.816 -9.099 D 4 2 3 5 5 15 36 97 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 39 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 G U = = MP 6 5 3 10 6 25 48 98 117 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 2.892 -12.435 -13.590 -7.893 -10.336 -9.854 -0.894 -10.524 3.004 -7.817 -11.599 -9.723 -8.892 ML 7 5 3 10 6 17 37 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 37 96 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 34 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 38 97 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 39 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 A U = = MP 12 11 6 16 6 24 46 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.891 -12.435 -13.590 -7.893 -10.336 -9.854 -1.419 -10.524 -0.382 -7.817 -11.599 -9.723 -8.892 ML 13 11 6 16 6 17 37 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 37 94 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 34 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 38 95 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 38 95 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 G C = = MP 18 17 6 22 6 23 44 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.645 -8.648 -12.948 -0.891 -13.457 -9.946 -7.933 -12.762 -9.988 3.868 -10.228 -0.236 -8.243 -10.360 -10.303 -11.697 ML 19 17 6 22 6 16 37 92 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 37 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 38 93 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 38 93 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 G C = = MP 24 23 6 28 6 22 43 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.164 -8.668 -11.884 0.930 -13.172 -10.244 -7.917 -11.838 -9.959 3.694 -10.282 0.187 -8.138 -10.537 -10.155 -10.540 ML 25 23 6 28 6 16 37 90 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 36 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 91 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 38 91 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 A U = = MP 30 29 6 34 6 20 41 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.104 -12.435 -13.590 -7.893 -10.336 -9.854 0.420 -10.524 2.480 -7.818 -11.599 -9.723 -1.083 ML 31 29 6 34 6 16 36 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 36 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 33 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 37 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 37 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 90 C G = = MP 36 35 6 40 6 18 39 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 3.043 -9.692 -10.530 -7.599 -10.650 -9.795 2.081 -10.943 1.810 -9.332 ML 37 35 6 40 6 15 36 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 35 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 33 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 36 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 89 U A = = MP 42 41 6 46 4 16 37 86 105 -13.280 -13.487 -0.001 -11.901 -11.107 -11.380 -10.426 -7.618 -8.779 -10.573 -1.535 -9.693 -10.529 -7.592 -10.650 -9.770 3.966 -10.944 -6.482 -9.331 ML 43 41 6 46 4 14 35 86 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 34 86 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 33 85 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 36 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 15 35 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 14 35 84 103 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 12 33 82 102 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 35 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 13 34 83 102 -14.843 -0.000 1.977 -9.979 -4.053 -9.424 D 52 50 3 53 2 12 33 82 101 -8.445 -0.004 IL 53 53 3 53 2 13 34 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 33 82 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 13 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 13 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G U = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 -1.851 -12.435 -13.583 -7.893 -10.337 -3.116 1.658 -10.524 3.636 -7.818 -11.598 -9.723 -8.893 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.926 -9.692 -10.530 -7.600 -10.650 -9.795 -1.696 -10.943 -1.077 -9.332 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U A = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 15 34 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 33 -14.190 -0.266 -2.573 1.971 -9.926 -3.691 -9.398 D 86 84 3 87 3 0 0 16 34 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 13 32 -13.925 -0.044 -5.070 -4.294 -3.851 -7.590 1.954 D 89 87 3 90 3 0 0 13 32 -13.047 -8.560 -0.004 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 12 31 -13.882 -6.985 -0.012 -1.222 -7.591 -8.588 1.833 D 92 90 3 93 3 0 0 13 32 -13.243 -0.086 -4.106 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 13 32 -11.785 -0.001 -10.439 0.690 -4.149 0.630 -0.353 D 95 93 3 96 3 0 0 9 28 -15.310 -6.241 -0.019 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - g - + - ML 97 96 3 99 3 1 1 12 30 -11.862 -1.128 -0.884 -0.252 -3.849 0.712 0.539 D 98 96 3 99 3 0 0 8 27 -15.291 -10.804 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 8 15 -2.063 -0.397 -9.391 -1.049 -3.818 -4.664 1.768 D 101 99 3 102 3 0 0 4 11 -15.473 -0.002 -9.865 IL 102 102 3 102 3 1 1 8 15 -3.701 -0.134 -6.401 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.523 -8.383 1.337 -4.882 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 g u = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.607 -5.607 -5.601 1.528 -5.580 -6.451 -0.492 -4.221 -0.984 0.305 -6.239 2.022 0.790 -2.413 -0.370 1.884 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 u a = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.965 -11.168 -10.345 -2.803 -8.727 -10.530 1.733 -9.628 -10.429 -7.259 -10.579 -9.401 2.986 -3.435 1.979 -0.837 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 0.729 -9.692 -10.530 -7.599 -10.650 -9.795 3.797 -10.943 -1.253 -9.332 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.531 -8.714 -10.875 -2.398 -12.755 -11.120 -7.906 -10.895 -9.905 3.951 -10.399 -2.645 -7.969 -10.978 -9.923 -2.594 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 -8.760 -10.293 3.723 -12.400 -13.560 -7.862 -10.334 -9.855 -0.124 -10.523 -0.442 -1.779 -11.594 -2.901 -0.506 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -7.096 -4.512 -3.524 1.949 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.351 -9.094 0.532 -9.009 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -3.769 -3.187 -2.210 1.848 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 6 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - U - + - ML 166 165 2 168 3 1 6 50 69 -14.190 -0.000 -12.844 -0.167 -4.577 -3.360 1.570 D 167 165 2 168 3 0 4 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 5 49 68 -14.843 -0.000 -8.730 -10.482 1.984 -4.560 D 170 168 3 171 2 0 4 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 5 50 70 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 33 51 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 4 33 51 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 232 230 2 233 3 0 0 32 51 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 66 - U - + - ML 234 233 3 236 5 1 4 32 50 -13.126 -0.001 -12.941 -13.153 -14.045 -11.317 -10.026 -12.774 1.999 D 235 233 3 236 5 0 0 31 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 32 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 67 88 G C = = MP 237 236 3 241 6 2 4 31 49 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.462 -8.655 -12.491 -0.619 -13.355 -10.042 -7.929 -12.375 -9.978 3.781 -10.247 0.667 -8.208 -10.419 -10.252 -11.190 ML 238 236 3 241 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 68 87 U G = = MP 243 242 6 247 6 2 4 29 47 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.102 -11.379 -10.423 -7.612 -8.775 -10.569 1.770 -9.689 -10.526 -0.944 -10.647 -9.773 0.268 -4.216 3.432 -9.327 ML 244 242 6 247 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 69 86 A U = = MP 249 248 6 253 6 2 4 27 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -4.665 -10.294 3.662 -12.435 -13.590 -7.893 -10.336 -9.854 -0.337 -10.524 1.321 -7.818 -11.599 -9.724 -8.892 ML 250 248 6 253 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 70 85 A U = = MP 255 254 6 259 6 2 3 25 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.402 -12.435 -13.590 -7.893 -10.336 -9.854 0.788 -10.524 1.882 -7.818 -11.599 -9.723 -8.892 ML 256 254 6 259 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 71 84 G C = = MP 261 260 6 265 4 2 2 23 41 -13.280 -13.487 -0.083 -4.161 -3.739 -8.672 -11.036 0.922 -12.749 -10.760 -7.792 -11.075 -3.809 3.757 -10.340 -1.241 -7.913 -10.762 -9.865 -9.673 ML 262 260 6 265 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 72 - A - + - ML 267 266 6 269 3 1 1 21 39 -4.498 -0.066 -12.762 1.361 -8.400 0.375 -2.927 D 268 266 6 269 3 0 0 19 37 -11.477 -0.025 -5.869 IL 269 269 3 269 3 1 1 22 41 -1.545 -0.616 -7.726 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 19 37 -14.190 -0.007 -7.789 -2.876 -4.525 -2.093 1.842 D 271 269 3 272 3 0 0 18 37 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - A - + - ML 273 272 3 275 3 1 1 18 36 -14.184 -0.000 -12.838 1.427 -3.124 -0.188 -1.648 D 274 272 3 275 3 0 0 17 35 -8.187 -0.270 -2.579 IL 275 275 3 275 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - g - + - ML 276 275 3 278 3 1 1 17 35 -5.863 -0.025 -12.844 0.005 -3.014 0.564 0.480 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 17 35 -3.434 -0.163 -6.134 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 16 34 -14.190 -0.059 -4.647 1.507 -8.194 -0.116 -2.114 D 280 278 3 281 3 0 0 15 34 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - G - + - ML 282 281 3 284 3 1 1 15 33 -4.719 -0.122 -4.531 -0.616 -2.628 1.232 -0.256 D 283 281 3 284 3 0 0 10 28 -11.009 -6.522 -0.016 IL 284 284 3 284 3 1 1 17 35 -1.476 -0.655 -7.584 0.000 0.000 0.000 0.000 [ MATL 74 ] 83 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -3.422 -1.814 -1.993 1.753 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ala LENG 90 MAXL 175 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:49:00 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Ala.sto NSEQ 282 EFFN 3.980255 CKSUM 1278061781 STATS LOCAL MSV -9.1520 0.71868 STATS LOCAL VITERBI -9.6730 0.71868 STATS LOCAL FORWARD -3.4379 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31820 1.73290 1.40977 1.16663 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 0.00000 * 1 0.88588 3.33406 0.68032 3.08898 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 2 0.25961 3.55897 1.80833 3.31725 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 3 2.45123 3.46780 0.16600 3.33584 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 4 1.92135 3.07572 0.28248 2.92763 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 5 0.91774 2.72493 0.81605 2.37673 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 6 2.71488 0.80932 2.49204 0.90169 6 c = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 7 3.52533 2.12255 3.34326 0.20394 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 8 3.23589 3.09854 3.77175 0.11368 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 9 0.10924 3.63168 3.12381 3.41048 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 10 2.06901 3.20204 0.24350 3.01335 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 11 3.47831 0.22147 3.28921 2.03623 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 12 3.79661 2.55394 3.62709 0.13561 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 13 3.79205 2.55344 3.62461 0.13585 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 14 0.07765 3.89019 3.55679 3.65983 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 15 0.11737 3.57878 3.03765 3.35561 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.15497 4.21187 2.04997 1.46634 0.26236 1.09861 0.40547 16 2.51757 2.47641 3.08910 0.23603 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05373 4.09092 3.33575 1.46634 0.26236 2.36909 0.09824 17 1.92273 2.34736 2.74711 0.36520 17 U + - _ 1.38629 1.38629 1.38629 1.38629 1.07614 4.07188 0.44309 1.46634 0.26236 0.23464 1.56472 18 1.09067 1.88475 1.37882 1.34605 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06818 3.41261 3.41261 1.46634 0.26236 3.30624 0.03734 19 1.26655 1.83854 1.37875 1.18008 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.25496 3.42802 1.64715 1.46634 0.26236 3.68052 0.02553 20 1.33096 1.70757 1.84693 0.92445 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12312 2.56135 3.25349 0.81163 0.58723 0.04588 3.10463 21 0.07765 3.89019 3.55679 3.65983 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 22 0.15478 3.81514 2.38701 3.52493 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 23 0.15486 3.81416 2.38683 3.52390 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 24 2.41121 3.43556 0.17638 3.22425 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 25 3.10161 1.29853 2.98567 0.45952 26 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 26 1.09993 2.79821 0.66654 2.37836 27 G + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 27 1.53893 1.61466 1.28550 1.17145 28 u = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 28 2.10528 1.26573 1.93810 0.79368 29 u = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 29 3.04503 1.47103 2.82730 0.41016 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 30 2.02576 2.80807 0.30939 2.60517 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 31 0.65987 2.33990 1.36799 2.02400 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 32 2.59340 2.54164 2.92518 0.23213 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 33 3.23589 3.09854 3.77175 0.11368 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 34 3.23589 3.09854 3.77175 0.11368 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 35 3.33724 4.28755 0.07324 3.84666 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 36 3.61847 0.09511 4.16464 3.02882 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 37 0.59666 2.81026 1.19597 2.44471 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 38 2.28136 2.31868 2.54958 0.32665 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 39 2.38221 1.57943 2.12881 0.54028 40 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 40 2.91351 0.37014 2.61716 1.70338 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 41 0.48583 2.99083 1.29461 2.80404 42 A = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 42 1.13037 2.09863 0.92916 1.83523 43 g = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 43 1.53906 1.65761 1.38146 1.06824 44 u = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 44 1.49601 2.19651 2.37616 0.55883 45 U + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 45 3.18776 4.07722 0.09181 3.52314 46 G + - , 1.38629 1.38629 1.38629 1.38629 1.21614 4.21187 0.37279 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 47 1.80322 1.30587 1.07721 1.49723 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 48 1.80099 1.30655 1.07804 1.49678 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 49 1.80001 1.30685 1.07840 1.49658 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 50 1.79966 1.30696 1.07854 1.49651 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 51 1.79960 1.30698 1.07856 1.49650 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 52 1.79968 1.30695 1.07853 1.49652 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 57 1.73091 1.21993 1.16187 1.53840 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 58 1.73078 1.21998 1.16191 1.53837 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 59 1.73073 1.22000 1.16193 1.53835 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 60 1.73082 1.21997 1.16190 1.53838 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 61 1.73115 1.21982 1.16178 1.53848 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 62 1.73193 1.21949 1.16149 1.53871 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.88120 0.02084 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04213 3.18806 64 0.07765 3.89019 3.55679 3.65983 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 65 3.23588 3.09854 3.77175 0.11368 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 66 2.30061 3.30227 0.19760 3.16278 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 67 2.63639 1.23031 2.24493 0.63442 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 68 0.49140 3.20300 1.21503 2.97814 69 A = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 69 0.68748 3.05971 0.93485 2.85400 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 70 1.75129 2.69521 0.38440 2.55019 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.06973 4.21187 2.94626 1.46634 0.26236 1.09861 0.40547 71 0.65099 2.53466 1.31068 2.04374 72 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06211 3.10508 4.17342 0.78352 0.61027 0.44733 1.01980 72 2.19994 2.38351 2.50391 0.33519 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03316 4.21187 4.02887 1.46634 0.26236 1.09861 0.40547 73 0.66706 2.23197 1.58935 1.74064 76 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03018 4.20889 4.20889 1.46634 0.26236 0.98041 0.47026 74 1.27321 2.05067 1.28369 1.15707 77 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04214 3.63282 4.21187 0.89393 0.52601 1.09861 0.40547 75 0.57143 2.49981 1.55752 1.94824 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05829 4.21187 3.17467 1.46634 0.26236 1.09861 0.40547 76 1.45751 2.13808 0.88249 1.44582 80 g + - _ 1.38629 1.38629 1.38629 1.38629 0.08850 3.20369 3.12154 0.83013 0.57269 1.57304 0.23245 77 2.09034 2.04522 2.38352 0.42346 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03187 4.15522 4.15522 1.46634 0.26236 0.35352 1.21138 78 2.75551 0.45904 2.50583 1.50092 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 79 3.07265 1.52740 2.85433 0.38712 85 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 80 3.18848 1.82350 2.99305 0.29146 86 U = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 81 1.78450 2.36912 0.43304 2.40769 87 G = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 82 3.38811 0.28120 3.12003 1.78858 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 83 0.23169 3.51943 1.97089 3.27381 89 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 84 1.34539 2.66296 0.53393 2.48263 90 G = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 85 2.77617 1.48837 2.52630 0.45882 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 86 3.16548 0.36343 2.89125 1.57496 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 87 3.55060 0.21968 3.29777 2.02836 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 88 3.52645 2.28264 3.35395 0.18197 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 89 3.30837 1.95400 3.12983 0.25104 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03009 4.21187 4.21187 1.46634 0.26236 1.09861 0.40547 90 0.20167 3.22076 2.39450 2.96640 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01516 4.19694 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Arg STATES 289 NODES 76 CLEN 90 W 100 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:50:43 2015 COM [1] cmbuild --hand --enone Arg_model.cm aligntRNAdb-Arg.sto COM [2] cmcalibrate --seed 208 Arg_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1565971551 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.8982 0.71868 ECMLC 0.61910 -6.82902 2.97115 1600000 517803 0.002317 ECMGC 0.28179 -45.40831 -28.11760 1600000 52249 0.007656 ECMLI 0.60366 -6.56171 3.42015 1600000 496707 0.002416 ECMGI 0.30075 -40.08550 -24.07613 1600000 49331 0.008108 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 100 125 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 16 38 101 127 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 39 102 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 22 46 100 126 -13.126 -0.001 -12.941 -13.153 -14.045 1.575 -3.133 -3.350 -0.307 D 4 2 3 5 5 13 34 99 124 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 16 37 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 U A = = MP 6 5 3 10 6 22 46 99 125 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.838 -10.358 -10.399 1.397 -3.264 -10.851 -4.779 -9.801 -10.366 -6.825 -10.624 -7.985 3.692 -3.312 -6.766 -4.733 ML 7 5 3 10 6 14 36 97 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 36 97 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 32 95 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 37 99 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 G C = = MP 12 11 6 16 6 22 44 97 123 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.751 -3.392 -13.263 -0.486 -13.513 -9.897 -7.934 -13.018 -9.993 3.909 -10.218 -2.710 -8.261 -10.329 -10.329 -12.059 ML 13 11 6 16 6 14 36 95 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 35 95 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 32 93 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 37 97 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 37 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 G C = = MP 18 17 6 22 6 21 42 95 121 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.051 -1.623 -10.226 2.254 -12.245 -12.745 -7.625 -10.310 -9.815 3.408 -10.453 -2.740 -7.613 -11.284 -9.495 -3.061 ML 19 17 6 22 6 14 35 93 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 35 93 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 32 91 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 36 95 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 37 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 U A = = MP 24 23 6 28 6 19 40 93 119 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.368 -10.571 -1.896 -9.692 -2.291 -7.600 -10.650 -9.795 3.906 -10.943 -2.964 -9.332 ML 25 23 6 28 6 14 35 92 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 35 91 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 31 89 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 14 36 93 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 36 92 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 A U = = MP 30 29 6 34 6 17 38 91 117 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -0.277 -2.542 -10.294 3.709 -12.435 -13.590 -7.893 -10.336 -9.854 -0.647 -10.524 -3.419 -7.818 -11.599 -9.724 0.235 ML 31 29 6 34 6 13 34 90 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 34 89 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 31 87 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 35 91 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 35 90 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 90 A U = = MP 36 35 6 40 6 15 36 89 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -4.014 -5.794 -5.790 3.095 -0.600 -6.642 0.447 -0.671 -5.849 -0.332 -6.420 -2.141 0.821 -0.272 -1.607 -0.466 ML 37 35 6 40 6 13 34 88 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 33 88 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 31 86 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 34 89 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 34 88 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 89 U A = = MP 42 41 6 46 4 13 34 87 113 -13.280 -13.487 -0.001 -11.901 -11.056 -11.181 -10.415 -1.033 -8.808 -10.601 -1.691 -9.700 -10.497 -0.204 -10.639 -9.345 3.828 -10.946 -2.994 -9.307 ML 43 41 6 46 4 12 33 87 112 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 32 87 112 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 31 85 111 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 33 88 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 33 88 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 32 85 111 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 10 30 84 109 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 32 87 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 10 31 84 110 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 9 30 83 109 -8.445 -0.004 IL 53 53 3 53 2 11 31 85 110 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 30 83 109 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 27 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.311 -8.732 -10.571 1.153 -12.589 -11.805 -7.890 -10.606 -9.880 3.206 -10.454 2.180 -7.888 -11.226 -9.817 -9.176 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 U A = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.416 -9.692 -10.530 -7.599 -10.650 -9.795 3.728 -10.943 -4.086 -9.332 ML 71 69 6 74 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 77 75 6 80 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.190 -0.014 -6.670 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.176 -1.137 -0.875 1.941 -8.647 -3.145 -4.505 D 86 84 3 87 3 0 0 15 34 -9.120 -4.633 -0.062 IL 87 87 3 87 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 13 32 -13.040 -1.047 -0.955 0.324 0.508 -5.863 0.389 D 89 87 3 90 3 0 0 12 30 -14.749 -10.262 -0.001 IL 90 90 3 90 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 12 30 -3.792 -3.765 -0.227 -1.304 0.593 -5.155 1.042 D 92 90 3 93 3 0 0 12 30 -15.256 -0.234 -2.738 IL 93 93 3 93 3 1 1 13 31 -3.341 -0.174 -6.041 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 12 30 -13.670 -0.033 -5.460 1.458 -1.135 -0.860 -2.024 D 95 93 3 96 3 0 0 10 29 -13.892 -1.380 -0.700 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - c - + - ML 97 96 3 99 3 1 1 10 29 -13.865 -1.016 -0.985 0.478 0.568 -1.971 -0.202 D 98 96 3 99 3 0 0 9 28 -13.312 -8.825 -0.003 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 7 12 -3.687 -0.117 -11.504 -3.364 0.889 -6.235 1.027 D 101 99 3 102 3 0 0 5 11 -5.270 -0.040 -9.279 IL 102 102 3 102 3 1 1 7 12 -4.620 -0.069 -7.320 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.724 -3.599 -1.798 -1.617 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 A U = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.117 -8.789 -10.297 3.916 -12.068 -2.294 -2.376 -10.316 -9.868 -2.074 -10.527 -3.411 -7.682 -2.649 -9.447 -8.902 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.917 -1.869 -10.046 3.299 -11.925 -12.292 -7.243 -2.706 -9.740 1.166 -10.354 -0.502 1.445 -10.932 -9.141 -4.583 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.384 -10.427 -7.621 -8.778 -10.572 -1.663 -9.693 -10.530 -7.595 -10.650 -9.778 3.966 -5.581 -6.481 -9.332 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 -0.853 -10.294 3.844 -12.434 -13.589 -7.892 -10.336 -9.854 -0.061 -10.524 -6.045 -7.817 -11.599 -9.723 -3.284 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -9.326 1.986 -9.732 -4.820 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -4.785 -10.507 1.986 -9.484 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.943 -9.694 -2.710 -9.279 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -10.276 1.999 -10.915 -8.979 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 51 76 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 53 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 4 51 76 -14.190 -0.000 -12.844 1.824 -2.483 -3.868 -2.233 D 167 165 2 168 3 0 2 50 75 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - + - ML 169 168 3 171 2 1 3 50 75 -14.843 -0.000 0.194 -3.084 1.376 -2.815 D 170 168 3 171 2 0 2 49 74 -8.445 -0.004 IL 171 171 3 171 2 1 3 51 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 49 74 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 36 62 -14.190 -0.054 -4.757 IL 230 230 2 230 3 1 3 39 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - + - ML 231 230 2 233 3 1 4 36 62 -14.136 -0.000 -12.790 1.983 -9.972 -4.504 -9.395 D 232 230 2 233 3 0 1 35 61 -10.902 -0.038 -5.294 IL 233 233 3 233 3 1 2 38 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - U - + - ML 234 233 3 236 5 1 4 35 61 -13.126 -0.001 -12.941 -13.153 -14.045 -2.539 0.191 -7.645 1.423 D 235 233 3 236 5 0 0 34 59 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 2 36 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 88 U A = = MP 237 236 3 241 6 2 4 34 60 -14.078 -4.787 -0.054 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.213 -9.692 -10.530 -7.599 -10.650 -9.795 3.747 -10.943 -2.087 -9.332 ML 238 236 3 241 6 1 1 33 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 2 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 33 59 -5.363 -0.055 -8.874 -7.042 -8.148 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 86 A U = = MP 243 242 6 247 6 2 4 32 58 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.092 -8.752 -10.284 3.551 -12.407 -13.510 -7.858 -1.253 -9.850 1.384 -10.517 -0.635 -0.750 -11.568 -9.693 -8.885 ML 244 242 6 247 6 1 1 31 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 32 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 85 U A = = MP 249 248 6 253 6 2 4 30 56 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.385 -10.426 -7.621 -8.778 -10.572 -0.007 -9.693 -10.529 -0.749 -10.650 -9.780 3.841 -10.943 -4.049 -9.331 ML 250 248 6 253 6 1 1 29 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 29 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 26 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 30 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 30 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 84 G C = = MP 255 254 6 259 6 2 2 28 54 -14.078 -14.017 -0.308 -5.114 -5.435 -2.834 -10.585 -8.709 -10.951 -0.108 -12.790 -10.999 -7.905 -0.771 -9.910 3.850 -10.386 -4.235 -7.984 -10.924 -9.943 -9.566 ML 256 254 6 259 6 1 1 27 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 27 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 25 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 28 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 83 A U = = MP 261 260 6 265 4 2 2 26 52 -12.965 -13.172 -0.364 -2.166 -9.742 -0.454 -9.920 3.260 -11.971 -12.692 -2.736 -9.993 -9.510 2.444 -10.159 -3.698 -7.346 -11.058 -9.232 -8.538 ML 262 260 6 265 4 1 1 26 51 -7.069 -7.251 -0.044 -5.981 1.397 -2.190 -2.336 -0.074 MR 263 260 6 265 4 1 1 25 51 -8.215 -7.244 -0.967 -1.063 0.733 -0.448 -0.464 -0.184 D 264 260 6 265 4 0 0 24 50 -10.709 -10.390 -1.395 -0.693 IL 265 265 5 265 4 1 1 28 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - U - + - ML 267 266 6 269 3 1 2 25 50 -13.720 -0.000 -12.374 -0.301 -0.740 -7.048 1.369 D 268 266 6 269 3 0 0 23 49 -13.769 -0.380 -2.112 IL 269 269 3 269 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 74 - U - + - ML 270 269 3 272 3 1 1 24 49 -14.095 -0.060 -4.609 -0.406 -1.307 -2.846 1.434 D 271 269 3 272 3 0 0 23 48 -11.668 -0.022 -6.059 IL 272 272 3 272 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 75 - c - + - ML 273 272 3 275 3 1 1 23 48 -14.134 -0.011 -7.026 -0.048 0.700 -4.663 0.453 D 274 272 3 275 3 0 0 22 47 -10.953 -0.037 -5.345 IL 275 275 3 275 3 1 1 24 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 76 - A - + - ML 276 275 3 278 3 1 1 22 47 -5.180 -0.070 -5.644 1.263 -1.782 -2.533 0.184 D 277 275 3 278 3 0 0 17 43 -8.762 -0.176 -3.154 IL 278 278 3 278 3 1 1 26 51 -1.037 -0.979 -7.534 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.161 -0.074 -4.332 1.567 -0.989 -4.251 -1.056 D 280 278 3 281 3 0 0 11 30 -10.047 -5.560 -0.032 IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - a - + - ML 282 281 3 284 3 1 1 7 14 -5.413 -0.558 -1.750 0.991 -0.453 -1.181 -0.250 D 283 281 3 284 3 0 0 5 12 -11.767 -7.280 -0.010 IL 284 284 3 284 3 1 1 8 15 -3.702 -0.134 -6.403 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.929 1.098 -4.536 0.368 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Arg LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:50:43 2015 COM [1] cmbuild --hand --enone Arg_model.cm aligntRNAdb-Arg.sto NSEQ 282 EFFN 4.866669 CKSUM 1565971551 STATS LOCAL MSV -8.7521 0.71868 STATS LOCAL VITERBI -9.8288 0.71868 STATS LOCAL FORWARD -3.8353 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.12527 1.65775 1.69732 1.19834 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 0.00000 * 1 1.75016 1.56873 1.90196 0.75786 1 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 2 2.50362 3.68854 0.14522 3.56247 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 3 1.36332 2.65585 0.52904 2.46773 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 4 3.73836 2.69403 3.49062 0.12998 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 5 0.48223 2.46697 1.75948 2.07449 5 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 6 1.22488 1.48457 1.64517 1.24957 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 7 2.46113 1.72013 2.12357 0.48448 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 8 3.48918 3.31552 4.02988 0.08841 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 9 0.05939 4.14899 3.79812 3.93881 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 10 1.73411 3.00033 0.33568 2.83321 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 11 4.16596 2.86777 4.02844 0.09447 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 12 3.26664 1.36035 3.06265 0.41774 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 13 4.14950 2.86579 4.01901 0.09506 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 14 0.05939 4.14899 3.79812 3.93881 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03263 4.38046 3.93305 1.46634 0.26236 1.09861 0.40547 15 0.13825 3.45187 2.90408 3.15518 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.54778 4.37337 0.89366 1.46634 0.26236 1.27096 0.32929 16 1.23008 1.33797 2.13229 1.11844 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.39224 3.86828 1.19217 1.46634 0.26236 3.55577 0.02898 17 1.48287 1.35642 2.06836 0.94407 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.51253 2.88637 1.06350 0.84164 0.56388 0.19953 1.70990 18 0.68052 1.91640 1.81215 1.69712 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04797 4.13102 3.48132 1.46634 0.26236 0.97527 0.47336 19 1.15166 1.28202 2.03599 1.28786 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.46872 4.22108 1.02301 1.46634 0.26236 2.04275 0.13888 20 1.76723 1.14471 2.32933 0.88306 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08674 2.79490 3.81852 0.60932 0.78464 0.05505 2.92687 21 0.05939 4.14899 3.79812 3.93881 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 22 0.10878 4.21025 2.69595 3.87522 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 23 0.46698 3.22163 1.25758 3.01840 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 24 0.10905 4.20526 2.69500 3.87025 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 25 3.06361 0.59877 2.79741 1.07053 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 26 0.40415 2.48401 2.20350 1.97594 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 27 0.08829 3.86534 3.19676 3.78721 29 A = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 28 1.09190 1.97995 1.13885 1.57911 30 a = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 29 3.91215 2.48332 3.73922 0.13609 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 30 3.19777 4.11921 0.07709 4.06994 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 31 0.27892 3.38625 1.80581 3.09616 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 32 3.48918 3.31552 4.02988 0.08841 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 33 3.48918 3.31552 4.02988 0.08841 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 34 3.48918 3.31552 4.02988 0.08841 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 35 3.78163 0.08611 4.30303 3.07483 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 36 3.34011 4.41752 0.06847 3.98045 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 37 0.12681 3.60207 2.84022 3.39857 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 38 3.90342 0.07236 4.41763 3.28160 40 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 39 3.38648 1.89120 3.18139 0.25650 41 U = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 40 4.21436 0.09386 3.98177 2.87969 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 41 0.15499 3.88909 2.33025 3.65572 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 42 1.75388 1.27771 1.81016 0.95556 44 u = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 43 4.06124 3.31986 3.72929 0.08055 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 44 0.30405 2.47511 2.65461 2.22842 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 45 1.28091 2.48408 0.65902 2.10822 47 G + - , 1.38629 1.38629 1.38629 1.38629 1.38473 4.38046 0.30505 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 47 1.80313 1.30590 1.07724 1.49721 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 48 1.80083 1.30660 1.07810 1.49675 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 49 1.79983 1.30691 1.07847 1.49654 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 50 1.79945 1.30703 1.07862 1.49647 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 51 1.79937 1.30705 1.07864 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 52 1.79944 1.30703 1.07862 1.49647 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 53 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 54 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 55 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 57 1.73068 1.22003 1.16195 1.53834 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 58 1.73057 1.22007 1.16199 1.53830 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 59 1.73054 1.22009 1.16200 1.53829 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 60 1.73065 1.22004 1.16196 1.53833 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 61 1.73102 1.21988 1.16183 1.53844 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 62 1.73185 1.21952 1.16152 1.53868 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.10882 0.01656 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.07055 2.68647 64 0.08450 3.87261 3.35567 3.67548 66 A + - , 1.38629 1.38629 1.38629 1.38629 0.02607 4.35322 4.35322 1.46634 0.26236 0.49198 0.94524 65 2.08919 1.37821 2.78621 0.57531 67 U + - , 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 66 3.24866 1.41458 3.03829 0.40014 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 67 0.85016 2.20596 1.09563 2.05431 69 a = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 68 3.02156 1.65662 2.48241 0.39016 70 U = - < 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 69 1.90216 2.53231 0.36113 2.59847 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.15819 4.38046 2.01147 1.46634 0.26236 1.09861 0.40547 70 0.97472 2.48790 0.80874 2.36234 72 g = - < 1.38629 1.38629 1.38629 1.38629 0.19471 4.25118 1.81600 1.46634 0.26236 0.94893 0.48964 71 1.47916 1.68922 2.37197 0.70479 73 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03191 4.15391 4.15391 1.46634 0.26236 0.35301 1.21258 72 1.52204 1.86806 2.30234 0.64001 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05710 4.33292 3.16137 1.46634 0.26236 0.35401 1.21023 73 1.36889 1.14342 2.36756 1.09909 75 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03169 4.35219 4.00022 1.46634 0.26236 0.48229 0.96069 74 0.77060 1.98043 2.14724 1.26426 76 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06152 3.42275 3.61019 0.97028 0.47638 0.87822 0.53704 75 0.54365 1.91771 2.42183 1.69459 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06329 4.36597 3.02359 1.46634 0.26236 1.42286 0.27579 76 0.92776 1.66593 1.87868 1.33653 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29525 3.50913 1.48840 0.72702 0.66039 1.94263 0.15470 77 1.59032 0.98638 2.35077 1.11499 82 c + - _ 1.38629 1.38629 1.38629 1.38629 0.20600 4.09042 1.77530 1.46634 0.26236 0.13416 2.07503 78 2.58844 0.86730 2.30172 0.90463 83 c = - > 1.38629 1.38629 1.38629 1.38629 0.02905 4.24631 4.24631 1.46634 0.26236 0.16667 1.87393 79 2.85118 0.41812 2.54721 1.58163 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 80 0.43948 2.60605 1.51645 2.77559 85 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 81 2.25750 1.26339 2.11439 0.70931 86 u = - > 1.38629 1.38629 1.38629 1.38629 0.05331 3.23406 4.38046 0.54702 0.86434 1.09861 0.40547 82 0.46057 3.19434 1.27992 2.99525 88 A = - > 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 83 0.54631 2.26167 1.55040 2.25781 89 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 84 1.49440 1.74744 1.35584 1.06808 90 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 85 2.32062 1.91254 2.26465 0.43045 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 86 0.13854 3.74195 2.57905 3.51265 92 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 87 2.76343 0.59188 2.46386 1.20887 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 88 3.77557 0.17027 3.52880 2.26049 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 89 0.84838 2.05836 1.40595 1.61396 95 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02536 4.38046 4.38046 1.46634 0.26236 1.09861 0.40547 90 0.53541 2.27759 2.35481 1.52728 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01276 4.36787 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Asn STATES 289 NODES 76 CLEN 90 W 109 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:51:00 2015 COM [1] cmbuild --hand --enone Asn_model.cm aligntRNAdb-Asn.sto COM [2] cmcalibrate --seed 208 Asn_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3323941287 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.5804 0.71876 ECMLC 0.52385 -10.40344 1.66499 1600000 668081 0.001796 ECMGC 0.33810 -46.16329 -32.03251 1600000 47527 0.008416 ECMLI 0.52378 -10.15101 1.85893 1600000 647345 0.001854 ECMGI 0.35813 -41.50546 -28.29282 1600000 45399 0.008811 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 109 147 -13.075 -14.320 -0.023 -5.989 IL 1 1 2 1 4 20 44 110 148 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 46 110 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - G - + MR 3 2 3 5 5 25 50 109 147 -13.104 -0.001 -12.919 -13.131 -14.023 -8.705 -10.476 1.998 -9.463 D 4 2 3 5 5 17 41 108 146 -7.927 -0.097 -5.554 -6.985 -4.979 IR 5 5 3 5 5 18 42 109 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 U A = = MP 6 5 3 10 6 25 50 108 146 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 7 5 3 10 6 17 41 106 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 40 106 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 14 37 103 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 18 42 107 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 42 107 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 A U = = MP 12 11 6 16 6 24 48 106 144 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.908 -12.430 -13.587 -7.889 -10.336 -9.854 -5.420 -10.524 -0.080 -7.816 -11.599 -9.720 -8.892 ML 13 11 6 16 6 17 40 104 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 17 40 104 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 37 101 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 41 105 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 18 41 105 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 G C = = MP 18 17 6 22 6 23 46 104 142 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.603 -8.650 -12.835 1.063 -13.432 -9.966 -7.931 -12.668 -9.986 3.795 -10.232 -6.496 -8.235 -10.373 -10.290 -11.570 ML 19 17 6 22 6 16 40 102 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 40 102 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 36 99 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 41 103 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 41 103 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 A U = = MP 24 23 6 28 6 21 44 102 140 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.897 -12.435 -13.590 -7.893 -10.336 -9.854 -1.730 -10.524 -0.352 -7.817 -11.599 -9.723 -8.892 ML 25 23 6 28 6 16 40 100 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 39 100 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 13 36 97 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 41 101 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 41 101 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 U A = = MP 30 29 6 34 6 19 42 100 138 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 0.038 -9.692 -10.530 -7.599 -10.650 -9.795 3.630 -10.943 1.361 -9.332 ML 31 29 6 34 6 16 39 98 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 16 39 98 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 13 36 95 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 17 40 99 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 17 40 99 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 U A = = MP 36 35 6 40 6 17 40 98 136 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.486 -9.692 -10.530 -7.599 -10.650 -9.794 3.760 -10.943 0.425 -1.397 ML 37 35 6 40 6 15 38 97 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 15 38 96 134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 13 36 94 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 39 97 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 39 97 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 G C = = MP 42 41 6 46 4 15 38 96 134 -13.280 -13.487 -0.033 -5.472 -11.529 -8.653 -12.648 0.568 -13.393 -10.004 -7.930 -12.511 -9.982 3.834 -10.239 -2.034 -8.221 -10.396 -10.271 -11.362 ML 43 41 6 46 4 14 37 95 133 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 14 37 95 133 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 35 94 131 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 38 96 134 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 37 96 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - + - ML 48 47 6 50 3 13 36 94 132 -14.158 -0.010 -7.184 1.984 -9.930 -9.333 -4.589 D 49 47 6 50 3 12 35 93 131 -10.210 -0.062 -4.601 IL 50 50 3 50 3 13 36 95 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 35 93 131 -14.834 -0.000 1.890 -9.323 -1.778 -9.080 D 52 50 3 53 2 11 34 92 130 -8.796 -0.003 IL 53 53 3 53 2 12 36 94 131 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 34 92 130 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 44 63 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 44 63 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 2 26 44 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 28 G U = = MP 58 57 1 62 6 2 4 26 44 -14.078 -14.017 -0.005 -12.794 -8.337 -13.468 -10.099 -8.759 -10.294 0.384 -12.435 -13.588 -7.893 -10.337 -9.854 1.415 -10.524 3.586 -7.817 -11.599 -9.723 -8.892 ML 59 57 1 62 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 27 C G = = MP 64 63 6 68 6 2 4 24 42 -14.074 -14.013 -0.021 -12.789 -6.126 -13.464 -11.097 -11.347 -10.422 -7.586 -8.780 -10.573 3.953 -9.691 -10.521 -7.568 -3.233 -2.054 -5.511 -10.942 -2.957 -9.325 ML 65 63 6 68 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -8.043 -6.772 -0.567 -6.750 -1.884 -4.964 -0.594 -1.626 1.333 -1.016 D 67 63 6 68 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 26 C G = = MP 70 69 6 74 6 2 4 22 40 -14.057 -13.997 -0.001 -12.773 -13.053 -13.448 -11.088 -11.368 -10.406 -7.605 -8.756 -10.550 3.951 -9.672 -10.509 -7.577 -10.629 -9.770 -1.008 -10.922 -6.459 -9.311 ML 71 69 6 74 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -9.603 -8.332 -0.169 -8.310 -3.444 -6.524 -2.864 -4.240 1.898 -3.601 D 73 69 6 74 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 A G = = MP 76 75 6 80 4 2 2 20 38 -13.280 -13.487 -0.013 -6.782 1.000 -11.309 3.495 -0.760 -8.792 -10.585 -0.349 -9.698 -0.847 -7.543 -10.649 -9.606 -0.839 -10.949 -2.183 -9.326 ML 77 75 6 80 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - G - + - ML 82 81 6 84 3 1 2 17 35 -14.177 -0.000 -12.831 -0.320 -8.026 1.651 -4.211 D 83 81 6 84 3 0 0 18 36 -9.002 -4.515 -0.067 IL 84 84 3 84 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - U - + - ML 85 84 3 87 3 1 1 16 34 -14.177 -0.055 -4.731 -0.704 -2.724 -1.374 1.510 D 86 84 3 87 3 0 0 17 35 -9.002 -4.515 -0.067 IL 87 87 3 87 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 15 33 -14.122 -3.007 -0.192 -2.009 -4.646 -4.936 1.879 D 89 87 3 90 3 0 0 15 33 -11.212 -6.725 -0.014 IL 90 90 3 90 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 14 32 -2.124 -0.520 -3.768 -1.168 -3.575 -1.005 1.572 D 92 90 3 93 3 0 0 12 31 -15.429 -0.002 -9.820 IL 93 93 3 93 3 1 1 14 32 -3.960 -0.111 -6.660 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - + - ML 94 93 3 96 3 1 1 12 31 -14.178 -0.000 -12.832 -0.579 -5.252 1.708 -4.726 D 95 93 3 96 3 0 0 14 33 -8.970 -4.483 -0.069 IL 96 96 3 96 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - a - + - ML 97 96 3 99 3 1 1 11 29 -14.178 -0.076 -4.278 0.981 -1.784 -0.729 0.180 D 98 96 3 99 3 0 0 13 32 -8.970 -4.483 -0.069 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 8 13 -0.397 -2.055 -12.756 -1.952 -0.542 -7.595 1.609 D 101 99 3 102 3 0 0 4 10 -11.574 -0.024 -5.966 IL 102 102 3 102 3 1 1 7 12 -4.546 -0.064 -11.167 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.659 -2.513 -2.244 -1.136 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.027 -8.173 0.729 -1.729 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.974 -11.183 -10.350 -1.279 -4.714 -10.533 1.443 -9.632 -10.436 -7.280 -10.583 -9.426 3.542 -10.841 -0.158 -1.888 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.361 -12.055 -12.202 -11.198 -10.406 -12.081 -9.322 -11.849 -10.389 -11.190 -12.400 -11.868 3.995 -10.491 -5.271 -5.537 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.901 -8.639 -13.807 -1.399 -13.588 -9.838 -7.936 -13.429 -10.000 3.963 -10.206 -6.551 -8.286 -10.291 -10.364 -12.718 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.249 1.948 -9.650 -2.851 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 58 96 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 3 60 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 2 58 96 -14.190 -0.040 -5.195 1.176 -7.555 -0.403 -0.030 D 167 165 2 168 3 0 0 57 94 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 59 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - + - ML 169 168 3 171 2 1 1 57 95 -14.803 -0.000 -1.598 -2.662 0.067 1.301 D 170 168 3 171 2 0 0 56 94 -9.539 -0.002 IL 171 171 3 171 2 1 1 58 95 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 56 94 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -13.489 -13.170 -3.654 -0.120 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - U - + - ML 216 215 6 218 3 1 1 14 32 -10.638 -0.003 -9.292 -5.946 -5.413 -6.813 1.982 D 217 215 6 218 3 0 0 9 27 -15.483 -10.996 -0.001 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - U - + - ML 219 218 3 221 3 1 1 13 31 -10.638 -0.003 -9.292 -5.946 -5.413 -6.813 1.982 D 220 218 3 221 3 0 0 8 26 -15.483 -10.996 -0.001 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - U - + - ML 222 221 3 224 3 1 1 11 30 -10.638 -3.741 -0.113 -4.159 -0.449 -4.930 1.668 D 223 221 3 224 3 0 0 7 25 -15.483 -10.996 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 47 85 -14.190 -0.053 -4.783 IL 230 230 2 230 3 1 1 49 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - U - + - ML 231 230 2 233 3 1 2 47 85 -0.075 -4.302 -12.791 -2.056 -2.559 -2.821 1.786 D 232 230 2 233 3 0 0 45 83 -10.878 -0.039 -5.269 IL 233 233 3 233 3 1 2 46 84 -8.764 -0.004 -11.464 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - C - + - ML 234 233 3 236 5 1 2 45 83 -13.126 -0.001 -12.941 -13.153 -14.045 -0.860 1.258 -7.399 0.072 D 235 233 3 236 5 0 0 44 81 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 46 83 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 92 G C = = MP 237 236 3 241 6 2 2 44 82 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.932 -8.682 -11.483 0.574 -13.025 -10.466 -7.912 -11.469 -9.941 3.584 -10.318 1.323 -8.081 -10.660 -10.076 -10.118 ML 238 236 3 241 6 1 1 43 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 42 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 39 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 44 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 44 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 91 U A = = MP 243 242 6 247 6 2 2 42 80 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.984 -11.117 -10.368 -1.551 -8.767 -10.566 -0.185 -9.657 -10.445 -7.281 -10.598 -2.020 3.314 -10.877 0.101 1.808 ML 244 242 6 247 6 1 1 41 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 40 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 37 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 42 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 90 G C = = MP 249 248 6 253 6 2 2 40 78 -3.884 -14.017 -0.102 -12.794 -13.073 -13.468 -11.374 -8.659 -12.298 1.326 -13.305 -10.095 -7.928 -12.207 -9.973 3.747 -10.257 -4.279 -8.190 -10.451 -10.227 -10.980 ML 250 248 6 253 6 1 1 39 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 38 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 36 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 39 77 -7.028 -7.290 -0.027 -8.946 -9.722 -9.382 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 39 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 89 G C = = MP 255 254 6 259 6 2 2 38 76 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.843 -2.042 -13.578 -1.361 -13.561 -9.860 -7.936 -13.261 -9.998 3.936 -10.210 -4.199 -8.277 -10.305 -10.352 -12.434 ML 256 254 6 259 6 1 1 37 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 37 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 35 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 38 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 37 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 88 G C = = MP 261 260 6 265 4 2 2 36 74 -13.280 -13.487 -0.055 -4.742 -11.955 -8.638 -14.050 -2.253 -13.615 -9.818 -7.937 -13.601 -10.003 3.967 -2.921 -6.560 -8.294 -10.279 -10.376 -13.033 ML 262 260 6 265 4 1 1 36 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 35 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 34 72 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 37 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 36 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - A - + - ML 267 266 6 269 3 1 1 34 72 -2.991 -0.194 -12.790 1.044 -7.195 -0.637 0.366 D 268 266 6 269 3 0 0 33 71 -10.911 -0.038 -5.302 IL 269 269 3 269 3 1 1 34 72 -5.904 -0.028 -8.604 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 33 71 -14.190 -0.000 -12.844 -0.925 -4.728 -4.069 1.755 D 271 269 3 272 3 0 0 31 69 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 34 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - a - + - ML 273 272 3 275 3 1 1 32 70 -14.190 -0.000 -12.844 0.740 -1.416 -0.657 0.401 D 274 272 3 275 3 0 0 30 68 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 33 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - G - + - ML 276 275 3 278 3 1 1 31 69 -5.326 -0.037 -12.844 0.559 -4.391 1.238 -3.049 D 277 275 3 278 3 0 0 29 67 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 31 69 -3.855 -0.120 -6.555 0.000 0.000 0.000 0.000 [ MATL 72 ] 82 - A - + - ML 279 278 3 281 3 1 1 30 68 -14.190 -0.000 -12.844 1.722 -7.440 -1.989 -1.173 D 280 278 3 281 3 0 0 28 65 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 31 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 83 - a - + - ML 282 281 3 284 3 1 1 29 67 -4.493 -0.305 -2.776 0.768 -4.406 0.562 -0.371 D 283 281 3 284 3 0 0 26 63 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 35 72 -0.704 -1.383 -8.574 0.000 0.000 0.000 0.000 [ MATL 74 ] 87 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.618 -2.505 0.550 0.772 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Asn LENG 90 MAXL 177 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:51:00 2015 COM [1] cmbuild --hand --enone Asn_model.cm aligntRNAdb-Asn.sto NSEQ 282 EFFN 3.567169 CKSUM 3323941287 STATS LOCAL MSV -9.5299 0.71876 STATS LOCAL VITERBI -9.7987 0.71876 STATS LOCAL FORWARD -3.5132 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35485 1.59254 1.35389 1.27164 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 0.00000 * 1 3.57956 2.39361 3.40426 0.16537 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 2 0.26017 3.46549 1.84057 3.24168 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 3 2.00800 3.22058 0.24777 3.09507 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 4 0.28265 3.40227 1.76405 3.18037 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 5 2.78852 1.50565 2.57299 0.44581 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 6 2.61923 1.61180 2.39338 0.45210 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 7 2.13859 3.27322 0.22183 3.14093 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.04653 4.17947 3.50121 1.46634 0.26236 1.09861 0.40547 8 0.11532 3.51520 3.26907 3.19085 8 A + - , 1.38629 1.38629 1.38629 1.38629 0.03619 4.16450 3.91193 1.46634 0.26236 0.70062 0.68573 9 0.22222 3.10942 2.34286 2.83736 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03123 4.17506 4.17506 1.46634 0.26236 0.93750 0.49693 10 1.76742 3.20442 0.30302 2.99452 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03318 4.17947 4.05517 1.46634 0.26236 1.09861 0.40547 11 3.43432 0.16686 3.09622 2.57417 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.04117 4.17744 3.68921 1.46634 0.26236 1.01748 0.44864 12 3.46542 0.20687 3.27585 2.13853 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.03140 4.16979 4.16979 1.46634 0.26236 0.80084 0.59593 13 1.08239 1.56756 1.61290 1.37298 13 a = - < 1.38629 1.38629 1.38629 1.38629 0.03718 4.17947 3.85413 1.46634 0.26236 1.09861 0.40547 14 1.53603 2.88351 0.44254 2.44846 14 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17356 4.17356 1.46634 0.26236 1.21921 0.35022 15 1.55531 2.02131 2.03480 0.64305 15 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05739 4.17356 3.20956 1.46634 0.26236 1.21921 0.35022 16 2.10637 2.34005 2.76169 0.33015 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.93350 4.14827 0.52588 1.46634 0.26236 1.61077 0.22281 17 1.32407 1.71217 1.68460 0.99979 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.14202 2.50973 2.97383 0.75118 0.63830 0.04947 3.03094 18 1.64100 2.89418 0.40070 2.51305 19 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03127 4.17372 4.17372 1.46634 0.26236 1.21629 0.35144 19 0.95368 1.90183 1.74553 1.23502 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06723 4.17372 3.00320 1.46634 0.26236 1.21629 0.35144 20 1.90734 1.68522 2.58518 0.52638 21 U + - _ 1.38629 1.38629 1.38629 1.38629 0.75132 0.66881 4.13888 0.09911 2.36063 0.44200 1.02932 21 0.52951 2.17655 2.15145 1.70728 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 22 1.46087 1.80774 0.95335 1.52100 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 23 2.37121 3.41545 0.18269 3.20047 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 24 2.81506 3.35517 0.14886 3.13487 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 25 3.17922 1.38099 2.98323 0.42095 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 26 0.87877 2.36089 1.13834 1.77183 29 a + - , 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 27 2.21914 1.27173 2.06427 0.72559 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 28 3.64669 2.35564 3.45224 0.16556 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 29 3.61052 2.39677 3.42052 0.16340 32 U = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 30 0.18350 3.42967 2.30789 3.33030 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 31 2.67836 3.64058 0.13187 3.55325 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 32 3.13052 0.17274 3.70897 2.40298 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 33 3.09926 2.98291 3.63205 0.13032 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 34 3.20561 4.14300 0.08438 3.70877 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 35 3.09926 2.98291 3.63205 0.13032 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 36 3.09926 2.98291 3.63205 0.13032 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 37 0.08989 3.75016 3.42770 3.50667 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 38 0.08989 3.75016 3.42770 3.50667 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 39 3.73938 0.15660 3.48050 2.40362 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 40 3.54993 2.66112 3.23616 0.14840 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 41 0.18556 3.61456 2.23226 3.34833 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 42 0.19212 3.62680 2.16691 3.39150 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 43 0.87736 2.23813 1.08530 1.96851 46 a = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 44 0.84663 2.15561 1.64845 1.33575 47 a + - , 1.38629 1.38629 1.38629 1.38629 0.04998 4.17947 3.39791 1.46634 0.26236 1.09861 0.40547 45 1.60500 1.99563 1.58262 0.78144 48 u + - , 1.38629 1.38629 1.38629 1.38629 1.16543 4.16116 0.39657 1.46634 0.26236 1.43147 0.27306 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 47 1.80328 1.30585 1.07719 1.49724 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 48 1.80108 1.30652 1.07801 1.49680 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 49 1.80013 1.30681 1.07836 1.49660 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 50 1.79979 1.30692 1.07849 1.49654 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 51 1.79974 1.30693 1.07851 1.49653 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 52 1.79983 1.30691 1.07847 1.49655 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.34710 0.10053 53 1.47179 1.70722 1.89678 0.82310 56 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08191 3.23598 3.23598 1.46634 0.26236 3.75886 0.02359 54 1.47179 1.70722 1.89678 0.82310 57 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08191 3.23598 3.23598 1.46634 0.26236 3.75886 0.02359 55 1.43957 1.52750 1.90102 0.92514 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.24025 3.23598 1.74727 1.46634 0.26236 3.75886 0.02359 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 57 1.73105 1.21987 1.16182 1.53845 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 58 1.73091 1.21993 1.16186 1.53841 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 59 1.73085 1.21995 1.16189 1.53839 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 60 1.73092 1.21992 1.16186 1.53841 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 61 1.73123 1.21979 1.16175 1.53850 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 62 1.73198 1.21947 1.16147 1.53872 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.83581 0.02182 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08039 2.56076 64 1.98527 2.13085 2.48972 0.41402 67 U + - , 1.38629 1.38629 1.38629 1.38629 1.07069 0.44388 4.15500 0.04820 3.05635 0.57410 0.82830 65 1.62799 0.85971 2.49133 1.21204 69 c + - , 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 66 1.92111 2.94076 0.30190 2.79161 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 67 1.97826 1.44790 1.80792 0.77082 71 u = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 68 1.89586 3.14460 0.27767 3.01232 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.07977 2.79091 4.17947 0.44094 1.03124 1.09861 0.40547 69 2.45435 3.43964 0.16754 3.31688 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 70 2.62720 3.43627 0.15072 3.33960 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.05696 4.17947 3.21744 1.46634 0.26236 1.09861 0.40547 71 0.92134 2.10315 1.71456 1.20430 76 a + - _ 1.38629 1.38629 1.38629 1.38629 0.12134 2.31696 4.15440 0.29275 1.37124 0.56772 0.83660 72 1.79763 2.25727 2.56345 0.42674 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 73 1.05213 1.83471 1.72908 1.15933 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 74 1.08713 2.46172 0.81099 2.01659 80 g + - _ 1.38629 1.38629 1.38629 1.38629 0.04838 3.44451 4.17947 0.78238 0.61123 1.09861 0.40547 75 0.44397 2.46615 2.16316 1.84110 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 76 1.02224 2.14875 1.26591 1.42047 83 a + - _ 1.38629 1.38629 1.38629 1.38629 0.17149 3.10308 2.18320 1.12019 0.39485 1.09861 0.40547 77 1.39667 1.95087 1.33937 1.05435 87 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07702 4.07702 1.46634 0.26236 0.24034 1.54346 78 3.53797 0.18102 3.19912 2.34640 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 79 3.51553 0.19183 3.26835 2.23721 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 80 3.23162 0.32065 2.96051 1.69807 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 81 1.06703 2.00094 1.22405 1.48401 91 a = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 82 3.01470 0.43577 2.74531 1.42734 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 83 3.35652 0.26427 3.09568 1.88299 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 84 0.58150 2.56324 1.33299 2.30064 94 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 85 0.64889 2.73943 1.09280 2.55758 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 86 3.38336 2.22180 3.19575 0.20246 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 87 3.32091 0.28457 3.04551 1.80809 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 88 3.45373 2.38178 3.26493 0.17699 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03109 4.17947 4.17947 1.46634 0.26236 1.09861 0.40547 89 0.18531 3.61702 2.23268 3.35097 99 A = - ) 1.38629 1.38629 1.38629 1.38629 0.04160 4.17947 3.67136 1.46634 0.26236 1.09861 0.40547 90 3.18701 4.12252 0.08610 3.68907 100 G + - : 1.38629 1.38629 1.38629 1.38629 0.01583 4.15370 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Asp STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Mon Apr 13 15:00:58 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Asp.sto COM [2] cmcalibrate --seed 208 Asp_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3961600854 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.4483 0.71867 ECMLC 0.55478 -8.01433 2.77720 1600000 477832 0.002511 ECMGC 0.29095 -44.65255 -27.98012 1600000 51143 0.007821 ECMLI 0.53310 -8.13976 3.01995 1600000 460136 0.002608 ECMGI 0.29905 -40.41672 -24.41095 1600000 47955 0.008341 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 38 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 40 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 95 - u - + MR 3 2 3 5 5 23 47 98 117 -13.126 -0.001 -12.941 -13.153 -14.045 0.532 -0.413 -7.185 0.845 D 4 2 3 5 5 14 35 96 116 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 38 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 94 G C = = MP 6 5 3 10 6 24 47 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.074 -8.727 -10.259 2.207 -12.346 -13.207 -7.769 -10.320 -9.836 3.187 -10.493 1.093 -7.723 -11.459 -9.617 -3.014 ML 7 5 3 10 6 16 36 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 36 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 33 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 37 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 38 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 93 A U = = MP 12 11 6 16 6 24 45 95 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.114 -8.784 -9.791 3.975 -12.400 -13.489 -7.913 -9.761 -9.874 -5.445 -10.538 -2.108 -7.842 -11.598 -9.734 -8.699 ML 13 11 6 16 6 15 36 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 36 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 33 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 37 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 37 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 92 G C = = MP 18 17 6 22 6 23 43 93 112 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.460 -3.577 -12.486 1.053 -13.348 -10.039 -7.923 -12.375 -9.978 3.778 -10.245 -3.178 -8.202 -10.415 -10.245 -11.188 ML 19 17 6 22 6 15 36 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 36 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 33 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 37 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 37 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 91 A U = = MP 24 23 6 28 6 21 41 91 110 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.106 -10.294 3.343 -12.430 -13.521 -7.883 -10.338 -9.853 2.217 -10.521 -0.072 -7.811 -11.584 -9.716 -8.893 ML 25 23 6 28 6 15 36 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 35 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 32 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 36 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 37 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 90 U A = = MP 30 29 6 34 6 19 39 89 108 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.875 -11.087 -10.312 -0.879 -2.649 -3.289 -0.428 -9.602 -10.389 -7.140 -10.550 -9.269 3.756 -10.792 -0.462 -2.894 ML 31 29 6 34 6 15 35 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 35 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 89 A U = = MP 36 35 6 40 6 17 37 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.997 -8.655 -10.154 3.561 -12.131 -12.744 -7.500 -10.257 -9.791 1.224 -10.429 -1.506 0.183 -3.292 -9.374 -1.962 ML 37 35 6 40 6 14 35 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 35 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 35 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 88 U A = = MP 42 41 6 46 4 15 35 85 104 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.412 -9.692 -10.530 -7.599 -10.650 -9.794 3.860 -3.329 -1.273 -2.336 ML 43 41 6 46 4 13 34 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 32 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 34 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 83 102 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 32 82 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 34 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 82 101 -5.879 -0.025 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 11 31 81 100 -8.445 -0.004 IL 53 53 3 53 2 12 32 82 101 -4.439 -0.068 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 27 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.025 -12.794 -5.902 -13.468 -11.624 -8.649 -12.892 -1.553 -13.446 -9.956 -7.933 -12.716 -9.987 3.834 -10.230 0.466 -8.240 -10.366 -10.297 -11.633 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 U A = = MP 64 63 6 68 6 2 3 22 40 -14.054 -13.993 -0.001 -12.769 -13.049 -13.444 -10.410 -9.346 -10.323 0.608 -9.877 -11.592 -5.561 -10.011 -10.071 -5.954 -10.550 -6.713 3.849 -11.268 -7.532 -9.033 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 21 40 -9.798 -8.527 -0.146 -8.505 -3.639 -6.719 1.913 -3.962 -3.457 -3.657 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 A U = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.164 -8.870 -10.305 3.932 -11.418 -12.888 -7.010 -10.267 -9.902 -5.523 -10.535 -6.168 -0.563 -11.528 -8.919 -8.926 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 A U = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -4.365 -4.484 -10.306 3.868 -11.367 -12.850 -6.964 -10.262 -9.906 -5.530 -10.535 -6.177 -0.723 -1.822 -2.810 -2.123 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.190 -0.003 -8.852 1.860 -3.843 -7.601 -1.761 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 14 33 -14.187 -0.575 -1.605 1.831 -3.545 -2.534 -2.447 D 86 84 3 87 3 0 0 15 34 -7.440 -2.953 -0.209 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - u - + - ML 88 87 3 90 3 1 1 13 32 -13.613 -1.371 -0.705 -0.882 0.684 -6.798 0.881 D 89 87 3 90 3 0 0 12 30 -14.015 -9.528 -0.002 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 13 31 -12.242 -5.346 -0.036 0.032 0.393 -4.882 0.705 D 92 90 3 93 3 0 0 12 30 -15.179 -1.738 -0.514 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 13 31 -12.061 -0.001 -10.715 1.310 -0.953 -1.885 -0.446 D 95 93 3 96 3 0 0 10 28 -15.237 -2.914 -0.205 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - + - ML 97 96 3 99 3 1 1 11 30 -12.594 -1.878 -0.458 1.290 -0.446 -1.871 -0.867 D 98 96 3 99 3 0 0 9 27 -15.033 -10.546 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - c - + - ML 100 99 3 102 3 1 1 8 16 -2.142 -0.374 -9.373 -4.034 0.973 -5.070 0.961 D 101 99 3 102 3 0 0 4 11 -15.475 -0.002 -9.867 IL 102 102 3 102 3 1 1 8 15 -3.625 -0.142 -6.325 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.800 -1.719 -5.261 -2.413 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.910 -4.534 -2.353 -8.139 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -0.847 -9.692 -10.530 -7.599 -10.650 -9.794 3.912 -10.943 -2.412 -2.440 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.096 -8.756 -2.130 3.699 -12.424 -13.559 -7.879 -10.334 -9.852 0.418 -10.521 -0.542 -0.598 -11.587 -9.711 -3.463 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.172 -10.294 3.722 -12.434 -13.588 -7.892 -10.337 -9.854 1.351 -10.524 -6.045 -7.817 -11.599 -9.723 -8.892 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 C G = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.109 -10.571 3.863 -9.692 -10.530 -7.600 -10.650 -9.796 -0.772 -10.943 -1.389 -9.332 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 0.251 -10.571 0.823 -9.692 -10.530 -7.599 -10.650 -9.795 3.534 -10.943 0.528 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.454 -3.502 -10.308 1.967 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.188 -2.543 -10.011 1.936 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -9.045 -1.636 -9.855 1.878 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.852 -9.184 -1.372 -9.012 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.718 -7.368 -2.254 -1.016 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 7 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 7 49 68 -14.190 -0.065 -4.500 1.978 -9.903 -9.353 -4.115 D 167 165 2 168 3 0 5 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 7 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - + - ML 169 168 3 171 2 1 6 48 67 -14.778 -0.000 1.514 -3.979 -0.099 -2.759 D 170 168 3 171 2 0 5 47 66 -9.951 -0.001 IL 171 171 3 171 2 1 6 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 5 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 5 28 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - + - ML 231 230 2 233 3 1 6 28 47 -4.170 -0.083 -12.844 -2.425 -6.829 -2.564 1.862 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 28 47 -4.854 -0.059 -7.554 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - U - + - ML 234 233 3 236 5 1 5 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -4.004 -0.955 -7.751 1.773 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 87 A U = = MP 237 236 3 241 6 2 6 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.451 -9.387 -7.033 3.987 -11.929 -12.307 -8.538 -6.866 -10.339 -6.028 -10.834 -3.394 -8.494 -11.574 -10.080 -6.907 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 86 u a = = MP 243 242 6 247 6 2 6 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.945 -11.137 -10.333 -0.499 -8.721 -10.525 2.474 -9.619 -10.415 -7.215 -10.569 -9.350 2.611 -10.820 -0.511 1.540 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 85 A U = = MP 249 248 6 253 6 2 4 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 0.685 -10.294 3.771 -12.435 -13.590 -7.893 -10.336 -9.854 -0.831 -10.524 -4.155 -7.818 -11.599 -9.724 -3.260 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 84 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.004 -12.794 -13.073 -8.581 -11.428 0.522 -12.414 0.908 -13.335 -10.062 -7.928 -12.309 -9.976 3.663 -10.251 -6.459 -8.201 -10.431 -10.242 -11.106 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 83 G C = = MP 261 260 6 265 4 2 2 18 37 -13.276 -13.483 -0.184 -3.062 -11.520 -1.617 -12.632 0.810 -13.383 -10.001 -7.923 -12.499 -9.978 3.791 -10.235 -3.827 -8.213 -10.392 -10.262 -11.347 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 21 40 -5.740 -5.421 -0.625 -1.691 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - U - + - ML 267 266 6 269 3 1 1 15 34 -14.007 -0.000 -12.661 -2.761 -0.886 -4.885 1.713 D 268 266 6 269 3 0 0 15 33 -12.556 -0.012 -6.948 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 32 -14.190 -0.005 -8.205 -3.641 -1.967 0.467 1.190 D 271 269 3 272 3 0 0 17 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - A - + - ML 273 272 3 275 3 1 1 13 31 -14.185 -0.000 -12.840 1.294 -1.039 -1.997 -0.302 D 274 272 3 275 3 0 0 15 34 -7.875 -0.344 -2.267 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - A - + - ML 276 275 3 278 3 1 1 11 29 -5.939 -0.024 -12.844 1.649 -2.226 -1.903 -1.383 D 277 275 3 278 3 0 0 14 32 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 12 30 -3.377 -0.170 -6.077 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.190 -0.000 -12.844 1.897 -3.287 -4.549 -2.946 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - A - + - ML 282 281 3 284 3 1 1 6 12 -4.134 -0.226 -3.510 1.211 -0.056 -1.607 -1.341 D 283 281 3 284 3 0 0 5 10 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 6 12 -4.887 -0.057 -7.587 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.278 0.994 -3.731 0.788 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Asp LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Mon Apr 13 15:00:58 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Asp.sto NSEQ 282 EFFN 5.271149 CKSUM 3961600854 STATS LOCAL MSV -9.0164 0.71867 STATS LOCAL VITERBI -9.6432 0.71867 STATS LOCAL FORWARD -3.1886 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.13826 1.69258 1.67185 1.17870 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 0.00000 * 1 1.38087 2.74828 0.50044 2.54677 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 2 0.11086 4.27534 2.61890 4.00944 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 3 1.99198 3.39929 0.23373 3.25445 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 4 0.80129 2.92529 0.83605 2.74603 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 5 2.15186 1.56128 2.07846 0.60012 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 6 0.94390 2.21131 1.06146 1.86186 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 7 3.11739 2.05967 2.89457 0.25759 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 8 3.58959 3.40272 4.13201 0.08006 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 9 0.05346 4.25161 3.89484 4.04742 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03712 3.70898 4.42781 0.79328 0.60214 1.09861 0.40547 10 2.65400 3.71629 0.13062 3.58443 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03712 4.42781 3.70898 1.46634 0.26236 1.09861 0.40547 11 2.18624 2.07845 2.66191 0.36713 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02448 4.41517 4.41517 1.46634 0.26236 0.68039 0.70607 12 0.19487 3.30340 2.52646 2.80749 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 13 0.20168 3.09691 2.55175 2.82158 14 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 14 0.23108 2.82861 3.00556 2.32565 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02571 4.42781 4.30906 1.46634 0.26236 1.09861 0.40547 15 0.28175 2.69154 2.50368 2.34360 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.31146 4.42630 1.36388 1.46634 0.26236 1.13978 0.38550 16 1.59762 1.16818 2.40471 0.92533 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.57176 4.14697 0.86832 1.46634 0.26236 3.15723 0.04347 17 1.30014 1.41180 2.04548 1.03709 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.63399 3.62972 0.81417 1.46634 0.26236 1.19787 0.35930 18 0.89987 1.74107 1.85448 1.34128 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05748 3.57805 3.57805 1.46634 0.26236 1.93668 0.15570 19 0.86846 1.67861 1.89717 1.41150 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.51449 3.74121 0.97161 1.46634 0.26236 3.79771 0.02268 20 1.49719 1.28265 1.98393 1.01773 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12797 2.48469 3.30310 0.72818 0.65930 0.03416 3.39369 21 0.30611 2.32198 2.78712 2.26322 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 22 3.08911 2.66442 2.89084 0.18719 24 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 23 2.92458 2.86094 3.10490 0.16928 25 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 24 0.40607 2.88032 1.91426 2.03894 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 25 3.75097 0.20332 3.52400 2.03249 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 26 0.16883 3.23384 2.62301 3.13838 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 27 3.66440 2.22758 3.45670 0.18025 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 28 0.66647 2.45972 1.26122 2.13948 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 29 0.42493 3.35312 1.31789 3.13475 31 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 30 3.52271 0.20989 3.32975 2.08746 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 31 2.77019 1.31801 2.57587 0.52156 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 32 3.21391 2.83657 3.73462 0.13092 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 33 3.08139 2.58232 3.59921 0.16115 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 34 3.66573 4.64719 0.05179 4.18029 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 35 2.94782 2.27906 3.46734 0.20584 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 36 4.01127 0.06520 4.51046 3.38079 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 37 0.20091 3.38593 2.24710 3.15914 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 38 0.37831 2.66824 2.34323 1.89985 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 39 0.59425 2.74742 1.18545 2.54691 41 A = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 40 2.25742 3.49162 0.18923 3.28780 42 G = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 41 3.35343 1.42566 3.14555 0.38325 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 42 2.35789 1.46141 2.21254 0.57261 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 43 0.21527 3.62277 2.04723 3.27356 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 44 0.07949 3.88110 3.66412 3.50119 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.05826 4.42781 3.10890 1.46634 0.26236 1.09861 0.40547 45 0.53186 2.54086 1.54784 2.11208 47 A + - , 1.38629 1.38629 1.38629 1.38629 1.39882 4.39455 0.30007 1.46634 0.26236 1.74735 0.19145 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 47 1.80309 1.30591 1.07726 1.49720 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 48 1.80078 1.30662 1.07812 1.49674 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 49 1.79976 1.30693 1.07850 1.49653 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 50 1.79937 1.30705 1.07864 1.49645 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 51 1.79929 1.30707 1.07868 1.49644 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 52 1.79935 1.30705 1.07865 1.49645 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 53 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 54 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 55 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 57 1.73059 1.22006 1.16198 1.53831 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 58 1.73049 1.22011 1.16202 1.53828 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 59 1.73047 1.22012 1.16203 1.53827 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 60 1.73059 1.22007 1.16198 1.53831 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 61 1.73097 1.21990 1.16184 1.53842 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 62 1.73182 1.21954 1.16153 1.53867 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03138 3.47735 64 2.35246 2.64744 2.74986 0.26124 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.06728 2.93517 4.42781 0.40144 1.10672 1.09861 0.40547 65 2.55290 1.97274 3.15925 0.30028 68 U + - , 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 66 0.10451 4.29220 2.68727 4.04612 69 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 67 2.10694 1.11513 2.05650 0.86129 70 u = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 68 0.27991 3.38075 1.81472 3.05244 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 69 1.71145 3.14063 0.32040 2.99007 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.02613 4.42781 4.27951 1.46634 0.26236 1.09861 0.40547 70 1.98842 3.30900 0.24296 3.16451 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.11929 4.42590 2.29769 1.46634 0.26236 1.00223 0.45738 71 2.22056 1.87984 2.82824 0.38607 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02655 4.33530 4.33530 1.46634 0.26236 0.21358 1.64864 72 1.86305 2.03797 1.36596 0.77789 75 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02665 4.42781 4.24362 1.46634 0.26236 1.09861 0.40547 73 0.74349 1.85500 2.09198 1.40791 76 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02423 4.42539 4.42539 1.46634 0.26236 0.97966 0.47071 74 0.46829 2.25231 2.20669 1.84070 77 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03660 3.72971 4.42781 0.80750 0.59054 1.09861 0.40547 75 0.20398 2.83991 2.92823 2.62287 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 76 0.77589 1.56751 2.02974 1.61058 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14058 2.91561 2.56423 0.39439 1.12114 1.09861 0.40547 77 1.93385 0.94181 2.55961 0.94636 82 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02797 4.36056 4.21226 1.46634 0.26236 0.27020 1.44064 78 3.39784 0.26761 3.12731 1.84824 83 C = - > 1.38629 1.38629 1.38629 1.38629 0.02422 4.42590 4.42590 1.46634 0.26236 1.00223 0.45738 79 3.23408 0.30912 2.95432 1.74640 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 80 3.35306 1.65322 3.16825 0.31264 85 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 81 1.20530 2.23155 0.96594 1.54924 86 g = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 82 4.23461 3.14276 4.07351 0.07760 87 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 83 0.30710 3.02245 1.85818 2.81698 88 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 84 2.10922 1.18486 2.02341 0.81945 89 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 85 0.69868 2.23419 1.36938 1.95604 90 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 86 2.99101 0.98508 2.72790 0.67139 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 87 3.48661 0.26626 3.22161 1.81240 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 88 4.21908 3.10918 4.07746 0.07937 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 89 2.85655 0.66699 2.55812 1.04461 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 90 1.14196 1.60049 2.36585 0.95415 95 u + - : 1.38629 1.38629 1.38629 1.38629 0.01216 4.41580 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Cys STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:06 2015 COM [1] cmbuild --hand --enone Cys_model.cm aligntRNAdb-Cys.sto COM [2] cmcalibrate --seed 208 Cys_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 480526937 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.4383 0.71871 ECMLC 0.66636 -7.37752 1.72648 1600000 517441 0.002319 ECMGC 0.31742 -46.33656 -30.46284 1600000 61702 0.006483 ECMLI 0.65657 -7.19207 1.97530 1600000 493391 0.002432 ECMGI 0.33276 -42.03670 -27.14132 1600000 56840 0.007037 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 12 35 99 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 37 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - U - + MR 3 2 3 5 5 19 41 98 117 -13.126 -0.001 -12.941 -13.153 -14.045 -9.618 -4.004 -10.495 1.977 D 4 2 3 5 5 10 31 96 116 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 12 35 98 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 A U = = MP 6 5 3 10 6 19 41 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.360 -12.435 -13.590 -7.893 -10.336 -9.854 -0.046 -10.524 2.247 -7.818 -11.599 -9.723 -8.892 ML 7 5 3 10 6 11 33 95 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 11 33 95 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 9 28 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 12 34 96 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 12 35 96 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 G C = = MP 12 11 6 16 6 19 39 95 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.860 -8.641 -13.642 -1.684 -13.569 -9.853 -7.936 -13.309 -9.999 3.939 -2.741 -2.416 -8.280 -10.301 -10.355 -12.512 ML 13 11 6 16 6 11 32 93 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 11 32 93 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 28 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 12 34 94 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 12 34 94 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 C G = = MP 18 17 6 22 6 18 38 93 112 -14.078 -14.017 -0.005 -12.794 -8.228 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.333 -9.692 -10.530 -7.599 -10.650 -9.795 1.227 -10.943 1.831 -9.332 ML 19 17 6 22 6 11 32 91 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 11 32 91 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 28 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 12 33 92 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 12 34 92 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 C G = = MP 24 23 6 28 6 17 36 91 110 -14.073 -14.012 -0.001 -12.789 -13.069 -13.464 -11.105 -11.386 -10.422 -7.623 -8.772 -10.566 3.579 -9.688 -10.526 -7.595 -10.646 -9.791 -0.125 -10.939 1.637 -9.327 ML 25 23 6 28 6 11 31 89 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 11 32 90 109 -8.103 -6.832 -0.540 -6.810 -1.944 -5.024 -0.664 -1.712 1.377 -1.100 D 27 23 6 28 6 9 27 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 11 33 90 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 12 33 90 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 C G = = MP 30 29 6 34 6 16 34 89 108 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.390 -10.426 -7.626 -8.777 -10.571 3.413 -9.692 -10.530 -7.597 -10.650 -9.792 1.462 -2.466 1.258 -9.331 ML 31 29 6 34 6 11 31 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 30 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 27 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 11 32 88 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 11 32 88 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 U G = = MP 36 35 6 40 6 14 32 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.389 -10.426 -7.626 -8.777 -10.571 1.729 -9.692 -10.530 -7.597 -10.650 -9.792 1.665 -2.466 3.192 -2.495 ML 37 35 6 40 6 11 30 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 29 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 27 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 11 30 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 11 30 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 G C = = MP 42 41 6 46 4 12 30 85 104 -13.280 -13.487 -0.001 -11.901 -11.734 -8.645 -13.207 0.492 -13.503 -9.905 -7.934 -12.972 -9.993 3.865 -10.220 -6.521 -8.259 -10.334 -10.324 -11.994 ML 43 41 6 46 4 10 28 85 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 27 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 26 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 29 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 29 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - + - ML 48 47 6 50 3 10 28 83 102 -14.190 -0.000 -12.844 1.007 -2.963 -4.438 0.860 D 49 47 6 50 3 8 26 81 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 28 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - + - ML 51 50 3 53 2 9 27 82 101 -4.850 -0.051 0.533 -9.172 1.350 -8.975 D 52 50 3 53 2 8 26 81 100 -8.445 -0.004 IL 53 53 3 53 2 9 27 82 101 -5.344 -0.036 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 26 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 6 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 6 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 24 42 -0.020 -6.264 -11.604 -12.244 [ MATP 15 ] 11 27 G U = = MP 58 57 1 62 6 2 2 24 42 -14.059 -13.999 -0.001 -12.775 -13.055 -13.450 -10.130 -8.735 -10.339 -5.087 -12.446 -12.899 -7.869 -10.379 -9.842 2.484 -10.488 3.373 -7.815 -11.483 -9.723 -8.938 ML 59 57 1 62 6 1 1 21 40 -8.904 -9.250 -3.964 -3.659 -9.100 -0.232 -2.524 -2.348 -3.294 1.819 MR 60 57 1 62 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 U A = = MP 64 63 6 68 6 2 2 22 40 -14.059 -13.999 -0.001 -12.775 -13.055 -13.450 -12.405 -12.070 -12.281 -11.574 -10.476 -12.142 -10.710 -11.964 -10.385 -11.578 -12.478 -11.956 3.996 -10.482 -5.721 -5.507 ML 65 63 6 68 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 18 37 -12.002 -10.700 -6.497 -7.179 -7.196 -0.037 IL 68 68 5 68 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 G C = = MP 70 69 6 74 6 2 2 20 38 -14.059 -13.999 -0.001 -12.775 -13.055 -13.450 -11.592 -8.631 -12.836 1.035 -13.418 -9.944 -7.913 -12.666 -9.968 3.800 -10.213 -6.479 -8.218 -10.352 -10.274 -11.573 ML 71 69 6 74 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 18 37 -12.002 -10.700 -6.497 -7.179 -7.196 -0.037 IL 74 74 5 74 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 A U = = MP 76 75 6 80 4 2 2 18 36 -13.261 -13.468 -0.086 -4.120 -0.443 -2.544 -4.143 3.227 -9.561 -10.543 -1.957 -9.284 -2.055 -1.570 -9.556 -1.465 1.012 -9.619 -7.517 1.291 ML 77 75 6 80 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 18 36 -7.437 -7.118 -5.134 -0.061 IL 80 80 5 80 4 1 1 23 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.086 -0.134 -3.501 1.367 -7.041 -2.904 0.355 D 83 81 6 84 3 0 0 13 32 -11.790 -7.303 -0.010 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - U - + - ML 85 84 3 87 3 1 1 15 33 -13.953 -1.226 -0.805 -0.085 -2.731 -3.199 1.484 D 86 84 3 87 3 0 0 12 31 -12.900 -8.413 -0.004 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 14 33 -12.728 -3.701 -0.116 -0.031 -1.929 -0.898 1.152 D 89 87 3 90 3 0 0 12 30 -14.962 -10.475 -0.001 IL 90 90 3 90 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - c - + - ML 91 90 3 93 3 1 1 15 34 -9.037 -2.140 -0.375 0.061 0.442 -1.669 0.361 D 92 90 3 93 3 0 0 12 30 -15.570 -2.627 -0.255 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 14 32 -11.579 -0.002 -10.233 1.048 -6.253 0.930 -6.095 D 95 93 3 96 3 0 0 9 28 -15.354 -10.867 -0.001 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - u - + - ML 97 96 3 99 3 1 1 12 31 -11.579 -1.525 -0.616 0.259 -0.654 -0.917 0.712 D 98 96 3 99 3 0 0 9 27 -15.354 -10.867 -0.001 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 8 14 -1.293 -0.762 -8.713 -5.015 -4.573 -5.839 1.967 D 101 99 3 102 3 0 0 5 12 -7.222 -0.018 -7.501 IL 102 102 3 102 3 1 1 7 14 -4.058 -0.104 -6.758 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.102 -2.606 -1.268 0.349 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.392 -7.461 1.233 -1.590 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.717 -11.390 -2.952 -7.627 -8.777 -10.571 -0.340 -9.692 -10.530 -7.599 -10.650 -9.793 3.742 -10.943 0.610 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -8.777 -10.571 1.608 -9.692 -10.530 -7.598 -10.650 -9.793 3.497 -10.943 0.551 -2.514 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.844 -8.641 -13.582 -1.456 -13.561 -9.860 -7.936 -13.263 -9.998 3.960 -10.210 -4.065 -8.277 -10.305 -10.352 -12.438 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.293 3.963 -12.434 -13.589 -7.892 -10.336 -9.854 -1.916 -10.524 -3.092 -7.817 -11.599 -9.723 -8.892 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.198 -2.587 -10.023 1.938 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.745 -3.999 1.976 -9.468 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.400 1.974 -3.966 -7.911 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.988 -5.069 -9.321 -9.353 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.843 -9.160 -1.291 -9.000 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 6 50 69 -14.190 -0.000 -12.844 1.869 -4.186 -1.798 -8.035 D 167 165 2 168 3 0 4 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - + - ML 169 168 3 171 2 1 5 49 68 -14.843 -0.000 -1.873 -10.390 1.897 -9.417 D 170 168 3 171 2 0 4 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 5 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 32 51 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - + - ML 231 230 2 233 3 1 5 32 51 -5.644 -0.029 -12.844 1.533 -8.618 0.073 -4.292 D 232 230 2 233 3 0 0 31 49 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 33 51 -3.601 -0.144 -6.301 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - A - + - ML 234 233 3 236 5 1 5 31 50 -13.126 -0.001 -12.941 -13.153 -14.045 1.821 -4.505 -5.063 -1.344 D 235 233 3 236 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 32 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 92 G C = = MP 237 236 3 241 6 2 5 30 49 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 238 236 3 241 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 91 C G = = MP 243 242 6 247 6 2 5 28 47 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -8.777 -10.571 3.598 -9.692 -10.530 -7.598 -10.650 -9.793 1.006 -10.943 0.797 -2.939 ML 244 242 6 247 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 90 A U = = MP 249 248 6 253 6 2 4 26 45 -14.078 -14.017 -0.017 -6.458 -13.073 -13.468 -10.099 -0.817 -10.294 3.905 -12.435 -13.590 -7.893 -10.336 -9.854 -1.866 -10.524 -2.646 -7.818 -11.599 -9.724 -8.892 ML 250 248 6 253 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 89 G C = = MP 255 254 6 259 6 2 2 24 43 -14.062 -14.001 -0.652 -1.873 -5.316 -3.933 -11.733 -8.628 -13.239 -3.202 -13.492 -9.882 -7.916 -12.995 -9.977 3.930 -10.202 -1.240 -8.244 -10.313 -2.274 -12.034 ML 256 254 6 259 6 1 1 24 43 -8.756 -9.102 -3.817 -0.133 -8.952 -6.482 1.853 -3.240 -2.790 -2.872 MR 257 254 6 259 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 88 c c = = MP 261 260 6 265 4 2 2 19 37 -12.595 -12.802 -0.140 -3.442 -5.693 -3.443 -1.601 1.572 -1.585 2.247 1.497 1.015 -5.897 -1.144 -6.459 -4.255 -1.432 -6.010 -0.485 0.039 ML 262 260 6 265 4 1 1 23 42 -3.174 -10.404 -0.173 -9.133 -7.203 1.829 -7.762 -1.201 MR 263 260 6 265 4 1 1 24 43 -8.309 -0.258 -3.199 -4.266 -2.571 -3.627 1.789 -1.766 D 264 260 6 265 4 0 0 18 37 -9.616 -9.297 -1.083 -0.929 IL 265 265 5 265 4 1 1 25 43 -5.298 -0.098 -4.730 -8.467 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.443 -1.394 -1.991 0.000 0.000 0.000 0.000 [ MATL 68 ] 75 - U - + - ML 267 266 6 269 3 1 1 17 34 -4.057 -0.090 -12.669 -2.567 -2.832 -2.114 1.791 D 268 266 6 269 3 0 0 16 33 -12.496 -0.012 -6.887 IL 269 269 3 269 3 1 1 17 34 -4.798 -0.061 -7.498 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - U - + - ML 270 269 3 272 3 1 1 16 33 -14.190 -0.010 -7.221 -1.490 -3.192 -1.804 1.700 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - C - + - ML 273 272 3 275 3 1 1 14 31 -14.181 -0.008 -7.562 -0.127 1.373 -3.655 -1.269 D 274 272 3 275 3 0 0 15 33 -8.645 -0.192 -3.037 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - A - + - ML 276 275 3 278 3 1 1 13 30 -5.440 -0.037 -8.724 1.533 -3.704 -0.537 -1.560 D 277 275 3 278 3 0 0 13 30 -8.358 -0.237 -2.750 IL 278 278 3 278 3 1 1 14 30 -3.756 -0.129 -6.456 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 12 28 -14.187 -0.058 -4.670 1.788 -2.342 -2.121 -3.074 D 280 278 3 281 3 0 0 14 32 -7.515 -3.028 -0.198 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - u - + - ML 282 281 3 284 3 1 1 11 23 -3.160 -0.754 -1.760 -0.043 -0.339 -0.798 0.735 D 283 281 3 284 3 0 0 7 19 -11.060 -6.573 -0.016 IL 284 284 3 284 3 1 1 12 23 -2.279 -0.337 -8.742 0.000 0.000 0.000 0.000 [ MATL 74 ] 85 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.240 -0.141 -2.076 1.403 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Cys LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:06 2015 COM [1] cmbuild --hand --enone Cys_model.cm aligntRNAdb-Cys.sto NSEQ 282 EFFN 4.952728 CKSUM 480526937 STATS LOCAL MSV -8.7914 0.71871 STATS LOCAL VITERBI -9.8035 0.71871 STATS LOCAL FORWARD -3.5459 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33535 1.55487 1.35045 1.32202 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 0.00000 * 1 0.61137 3.52700 0.94203 3.26590 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 2 2.70614 3.67100 0.12873 3.55644 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 3 3.02196 0.62436 2.80397 1.03529 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02822 4.36417 4.19282 1.46634 0.26236 1.09861 0.40547 4 3.22510 0.46523 3.02204 1.26036 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02584 4.36179 4.36179 1.46634 0.26236 0.98770 0.46590 5 2.54249 0.70485 2.31385 1.11393 5 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 6 2.41585 1.27558 2.22299 0.64788 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 7 2.31147 3.68767 0.16537 3.56578 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 8 0.91447 2.10834 2.30819 0.97183 8 a + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 9 1.07988 3.06873 0.60345 2.70360 9 G + - , 1.38629 1.38629 1.38629 1.38629 0.05182 3.27602 4.36417 0.57581 0.82610 1.09861 0.40547 10 2.33792 3.50739 0.18018 3.26041 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03545 4.36417 3.81184 1.46634 0.26236 1.09861 0.40547 11 4.12104 2.86843 4.00664 0.09564 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 12 2.07094 3.51676 0.21034 3.38355 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 13 1.15560 1.66775 1.58284 1.23420 14 a = - < 1.38629 1.38629 1.38629 1.38629 0.06935 4.35474 2.91583 1.46634 0.26236 1.31836 0.31139 14 0.69029 2.28711 2.21415 1.24562 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09369 4.31255 2.57652 1.46634 0.26236 1.93923 0.15527 15 1.43969 2.07783 2.32580 0.61602 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.55157 4.24787 0.89243 1.46634 0.26236 2.45343 0.08992 16 1.31148 1.80052 1.80832 0.91270 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.68947 3.74474 0.74545 1.46634 0.26236 3.67087 0.02578 17 1.16784 1.52617 1.69935 1.24204 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14957 3.14531 2.34474 1.46634 0.26236 1.76902 0.18693 18 0.96533 2.06985 1.19623 1.65754 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06680 3.43237 3.43237 1.46634 0.26236 3.92463 0.01995 19 1.22743 1.62927 1.75862 1.08293 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.30229 3.43237 1.47591 1.46634 0.26236 3.61771 0.02721 20 1.44625 1.69469 1.86856 0.85204 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.14118 2.38551 3.22823 0.71306 0.67363 0.04059 3.22450 21 0.86129 2.06867 1.90811 1.19511 23 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03556 4.36109 3.80877 1.46634 0.26236 0.95980 0.48284 22 1.48915 1.76401 1.45840 0.99298 24 u = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 23 3.59635 0.23974 3.34343 1.89427 25 C = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 24 0.10823 4.21335 2.70193 3.87734 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 25 3.50022 0.92943 3.31912 0.61832 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 0.76603 0.62521 26 1.18605 2.58863 0.75136 1.91239 28 g + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 27 2.39412 1.62415 2.26042 0.49863 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 28 2.70242 1.28599 2.47035 0.55857 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 29 2.88356 4.02612 0.09797 3.93497 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 30 0.13850 4.07497 2.40269 3.82270 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 31 0.11209 3.97144 2.72385 3.83661 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 32 3.02798 2.56632 3.54621 0.16731 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 33 3.51125 3.33463 4.05234 0.08650 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 34 3.18939 3.73284 0.09551 3.65094 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 35 3.43460 0.11687 3.64653 2.95694 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 36 0.05803 4.17155 3.81933 3.96280 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 37 0.07783 3.77264 3.61390 3.69118 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 38 0.21593 3.30933 2.19628 3.06937 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 39 4.04615 3.11566 3.77569 0.08857 41 U = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 40 4.01576 2.78360 3.86312 0.10630 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 41 4.10042 0.11844 3.87739 2.59793 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 42 0.72401 2.64423 1.03857 2.40602 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 43 0.61834 2.43443 1.31609 2.25060 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 44 0.21758 3.04030 2.36438 2.92425 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 45 2.47072 3.84689 0.14728 3.47132 47 G + - , 1.38629 1.38629 1.38629 1.38629 1.36844 4.36417 0.31092 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 47 1.80312 1.30590 1.07725 1.49721 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 48 1.80082 1.30660 1.07810 1.49674 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 49 1.79981 1.30691 1.07848 1.49654 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 50 1.79943 1.30703 1.07862 1.49646 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 51 1.79935 1.30705 1.07865 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 52 1.79942 1.30703 1.07863 1.49646 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 53 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 54 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 55 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 57 1.73066 1.22003 1.16196 1.53833 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 58 1.73055 1.22008 1.16200 1.53830 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 59 1.73052 1.22009 1.16201 1.53829 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 60 1.73063 1.22004 1.16197 1.53832 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 61 1.73101 1.21989 1.16183 1.53843 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 62 1.73185 1.21953 1.16152 1.53868 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03414 3.39424 64 0.46670 2.90305 1.44623 2.49352 66 A + - , 1.38629 1.38629 1.38629 1.38629 0.04072 3.60521 4.36417 0.76642 0.62488 1.09861 0.40547 65 0.28122 2.74287 2.78734 2.12720 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 66 3.22541 4.15860 0.07436 4.11695 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 67 2.85420 0.53286 2.61565 1.26458 70 C = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 68 0.16650 3.90252 2.23680 3.63497 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 69 2.47095 3.25966 0.18824 3.02248 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.09590 4.36417 2.54188 1.46634 0.26236 1.09861 0.40547 70 1.55299 1.09755 1.69414 1.30586 73 c = - < 1.38629 1.38629 1.38629 1.38629 0.10109 3.26145 2.85048 0.60358 0.79154 1.02720 0.44318 71 2.15691 2.27767 2.48987 0.35828 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07230 2.88462 4.27785 0.43909 1.03458 0.23642 1.55804 72 1.92225 2.28764 2.33861 0.42197 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03068 4.36417 4.04639 1.46634 0.26236 1.09861 0.40547 73 1.44555 0.75531 2.50025 1.54904 78 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02974 4.35940 4.10339 1.46634 0.26236 0.89834 0.52297 74 0.55658 2.38644 1.74361 1.83264 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04478 3.52656 4.24157 0.71851 0.66841 0.93542 0.49828 75 0.33549 2.43471 2.34437 2.28791 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05535 4.36256 3.19169 1.46634 0.26236 1.13983 0.38548 76 1.29991 1.59858 1.80164 1.02101 82 u + - _ 1.38629 1.38629 1.38629 1.38629 0.38230 2.37311 1.49379 0.42175 1.06682 1.67729 0.20688 77 1.78216 1.53161 2.20604 0.68240 85 U + - _ 1.38629 1.38629 1.38629 1.38629 0.47063 2.68077 1.18130 0.43037 1.05059 0.13975 2.03695 78 1.53893 1.54240 1.23176 1.27388 88 g = - > 1.38629 1.38629 1.38629 1.38629 0.03371 4.09992 4.09992 1.46634 0.26236 0.13331 2.08098 79 3.38229 0.22853 2.98610 2.12159 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02600 4.35584 4.35584 1.46634 0.26236 0.79329 0.60213 80 3.83236 2.37757 3.68849 0.15018 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 81 1.68777 2.78765 0.39183 2.55509 91 G = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 82 4.25669 0.09133 4.01507 2.89907 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 83 3.75822 0.19076 3.51795 2.11457 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 84 1.47112 2.34360 0.58136 2.16097 94 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 85 1.52474 2.42860 0.51868 2.31406 95 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 86 2.03806 3.18388 0.25141 2.98394 96 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 87 1.65315 2.97385 0.36273 2.78595 97 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 88 3.77103 0.16051 3.39330 2.38964 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 89 3.48660 1.91419 3.32063 0.24105 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 90 3.21720 2.90574 3.74069 0.12614 100 U + - : 1.38629 1.38629 1.38629 1.38629 0.01297 4.35136 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Gln STATES 289 NODES 76 CLEN 90 W 106 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:26 2015 COM [1] cmbuild --hand --enone Gln_model.cm aligntRNAdb-Gln.sto COM [2] cmcalibrate --seed 208 Gln_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 477239941 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.0631 0.71872 ECMLC 0.60245 -8.47402 1.85575 1600000 605160 0.001983 ECMGC 0.32498 -50.92250 -35.58657 1600000 58412 0.006848 ECMLI 0.54956 -9.22579 2.05459 1600000 590818 0.002031 ECMGI 0.34442 -45.98687 -31.72910 1600000 54295 0.007367 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 106 132 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 40 107 133 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 41 108 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - G - + MR 3 2 3 5 5 22 49 106 132 -13.126 -0.001 -12.941 -13.153 -14.045 -8.727 -10.497 1.998 -9.485 D 4 2 3 5 5 12 36 105 131 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 39 106 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 U A = = MP 6 5 3 10 6 22 48 105 131 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 7 5 3 10 6 14 38 103 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 38 103 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 35 101 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 39 105 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 39 104 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 A U = = MP 12 11 6 16 6 22 47 103 129 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.071 -10.294 3.933 -12.435 -13.590 -7.893 -10.336 -9.854 -3.005 -10.524 -1.540 -7.818 -11.599 -9.724 -8.892 ML 13 11 6 16 6 13 38 101 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 38 101 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 35 99 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 39 103 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 39 102 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 99 G C = = MP 18 17 6 22 6 20 45 101 127 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.984 -8.637 -14.191 -6.102 -13.630 -9.808 -7.938 -13.697 -10.004 3.968 -10.199 -1.661 -8.299 -10.272 -10.383 -13.224 ML 19 17 6 22 6 13 37 99 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 37 99 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 35 97 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 38 101 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 39 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 98 A U = = MP 24 23 6 28 6 18 43 99 125 -5.611 -14.017 -0.030 -12.794 -13.073 -13.468 -10.098 -4.218 -10.293 3.387 -12.433 -13.577 -7.890 -10.336 -9.854 1.765 -10.523 1.048 -7.816 -11.596 -9.721 -8.892 ML 25 23 6 28 6 13 37 97 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 37 97 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 35 95 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 40 98 124 -5.443 -5.706 -0.084 -7.361 -8.137 -7.797 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 38 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 97 A U = = MP 30 29 6 34 6 16 41 97 123 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -4.445 -10.294 3.605 -12.435 -13.589 -7.893 -1.583 -9.854 0.245 -10.524 -0.145 -7.817 -11.599 -9.723 0.437 ML 31 29 6 34 6 12 37 96 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 37 95 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 34 93 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 38 97 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 38 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 96 u a = = MP 36 35 6 40 6 14 39 95 121 -5.055 -14.017 -0.045 -12.794 -13.073 -13.468 -11.094 -11.366 -10.418 -7.594 -4.524 -10.567 -0.180 -9.686 -10.519 -7.560 -10.643 -3.079 2.848 -3.469 2.840 -1.040 ML 37 35 6 40 6 12 36 94 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 36 94 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 34 92 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 37 94 120 -5.935 -6.198 -0.579 -7.853 -1.770 -8.290 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 37 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 95 a u = = MP 42 41 6 46 4 12 37 93 119 -13.265 -13.472 -0.001 -11.886 1.079 -7.707 -0.687 1.980 -8.407 -9.283 -5.107 -8.455 1.379 -1.112 -0.383 1.440 1.182 -8.485 -1.482 -3.213 ML 43 41 6 46 4 11 36 93 119 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 36 92 118 -7.141 -6.170 -0.214 -3.098 1.821 -2.974 -2.547 -2.578 D 45 41 6 46 4 9 34 91 117 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 36 94 120 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 36 93 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 10 35 91 117 -14.190 -0.000 -12.844 -1.742 -6.822 -1.004 1.675 D 49 47 6 50 3 8 34 90 116 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 36 92 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - G - + - ML 51 50 3 53 2 9 34 90 116 -5.586 -0.030 -0.048 -7.920 1.570 -4.060 D 52 50 3 53 2 8 33 89 115 -8.445 -0.004 IL 53 53 3 53 2 9 35 90 116 -4.689 -0.057 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 33 89 115 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 15 56 82 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 15 56 82 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 37 64 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 13 35 G C = = MP 58 57 1 62 6 2 5 37 64 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 59 57 1 62 6 1 2 36 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 2 36 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 37 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 37 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 34 U A = = MP 64 63 6 68 6 2 5 35 62 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.105 -11.364 -10.427 -7.604 -8.783 -10.576 -4.496 -9.696 -10.527 -7.582 -10.651 -9.732 3.957 -10.945 -1.301 -9.311 ML 65 63 6 68 6 1 2 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 2 34 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 35 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 33 G C = = MP 70 69 6 74 6 2 5 33 60 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.800 -8.643 -13.425 -1.157 -13.539 -9.877 -7.936 -13.144 -9.996 3.945 -10.214 -2.924 -8.270 -10.316 -10.342 -12.250 ML 71 69 6 74 6 1 2 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 2 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 32 U G = = MP 76 75 6 80 4 2 4 31 58 -13.280 -13.487 -0.001 -11.901 -11.109 -11.390 -2.262 -7.627 -8.777 -10.571 -1.297 -9.693 -10.530 -7.599 -10.650 -9.793 0.701 -10.943 3.760 -2.377 ML 77 75 6 80 4 1 1 31 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 31 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 29 56 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 2 32 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 2 32 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - + - ML 82 81 6 84 3 1 3 29 56 -14.190 -0.000 -12.844 1.802 -8.094 -1.231 -3.591 D 83 81 6 84 3 0 0 28 54 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 2 31 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - + - ML 85 84 3 87 3 1 2 28 55 -14.190 -0.031 -5.582 1.157 -3.790 -0.478 -0.029 D 86 84 3 87 3 0 0 26 53 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 2 30 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - U - + - ML 88 87 3 90 3 1 1 28 54 -14.160 -0.449 -1.904 -1.026 -1.814 -1.736 1.548 D 89 87 3 90 3 0 0 25 51 -10.115 -5.628 -0.031 IL 90 90 3 90 3 1 2 29 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - + - ML 91 90 3 93 3 1 1 27 53 -0.726 -1.601 -3.927 0.219 -4.035 -1.669 1.299 D 92 90 3 93 3 0 0 25 51 -13.791 -0.005 -8.183 IL 93 93 3 93 3 1 1 26 52 -2.054 -0.399 -10.788 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - + - ML 94 93 3 96 3 1 1 25 51 -14.121 -0.000 -12.775 -3.813 -9.559 1.923 -2.881 D 95 93 3 96 3 0 0 24 50 -11.243 -0.030 -5.634 IL 96 96 3 96 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - + - ML 97 96 3 99 3 1 1 24 50 -14.190 -0.036 -5.333 -2.598 -3.507 1.905 -8.457 D 98 96 3 99 3 0 0 21 48 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - + - ML 100 99 3 102 3 1 1 23 49 -2.640 -0.253 -12.808 -1.091 -6.769 -1.054 1.604 D 101 99 3 102 3 0 0 14 40 -10.350 -0.056 -4.742 IL 102 102 3 102 3 1 1 24 50 -1.017 -0.986 -9.923 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.857 -7.790 -2.230 -2.656 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -0.837 -7.846 1.730 -3.089 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 37 54 A U = = MP 112 111 3 116 6 2 2 26 45 -5.364 -14.017 -0.036 -12.794 -13.073 -13.468 -8.578 -7.219 -8.443 3.000 -9.655 -9.179 -4.741 -9.046 -8.754 2.064 -1.664 1.454 -1.272 -8.401 -2.573 -3.059 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 25 44 -5.659 -5.921 -0.072 -7.577 -8.353 -8.013 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 53 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.918 -12.434 -13.590 -7.892 -10.336 -9.854 -2.617 -10.524 -0.511 -7.817 -11.599 -9.723 -8.892 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 40 52 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.910 -8.639 -13.845 -1.605 -13.592 -9.834 -7.936 -13.456 -10.001 3.968 -10.205 -6.552 -8.287 -10.289 -10.366 -12.766 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 41 51 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.713 -12.435 -13.590 -7.893 -10.336 -9.854 0.519 -10.524 0.521 -7.817 -11.599 -9.723 -8.892 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 50 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.132 -8.815 -10.300 3.072 -11.823 -3.514 -7.371 -4.176 -9.879 -2.486 -10.529 0.568 -3.289 -11.561 0.217 2.172 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -2.681 -1.100 -1.726 1.621 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.599 -9.066 -0.047 -8.982 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.445 -5.176 0.073 -2.332 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - A - + - ML 166 165 2 168 3 1 2 49 68 -14.190 -0.000 -12.844 1.780 -4.893 -2.038 -1.787 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - G - + - ML 169 168 3 171 2 1 1 48 67 -14.843 -0.000 0.615 -8.259 1.269 -4.175 D 170 168 3 171 2 0 0 47 66 -8.445 -0.004 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 57 74 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 58 73 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 59 72 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 60 71 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 61 70 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 62 69 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 63 68 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 64 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 65 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 66 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 67 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 29 47 -14.190 -0.022 -6.035 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 75 - G - + - ML 231 230 2 233 3 1 1 28 47 -14.168 -0.000 -12.822 -0.865 -8.741 1.774 -5.104 D 232 230 2 233 3 0 0 28 47 -9.693 -0.090 -4.084 IL 233 233 3 233 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 76 - a - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.576 -2.899 0.377 0.106 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 77 94 g u = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.126 -5.613 -1.726 1.281 -5.655 -6.488 -0.516 -3.349 -2.854 0.698 -3.140 2.642 -1.133 -3.351 -1.759 1.739 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 78 93 U A = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.101 -11.376 -10.423 -3.111 -8.775 -10.569 0.066 -9.689 -10.525 -7.579 -3.469 -9.766 3.690 -10.938 0.817 -3.835 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 79 92 A U = = MP 249 248 6 253 6 2 2 22 41 -6.070 -14.017 -0.022 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.760 -12.435 -13.590 -7.893 -10.336 -9.854 0.062 -10.524 0.470 -7.817 -11.599 -9.723 -8.892 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 22 40 -5.055 -5.318 -0.110 -6.973 -7.750 -7.410 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 81 91 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.849 -8.641 -13.599 -2.577 -13.564 -9.858 -7.936 -13.276 -9.998 3.952 -10.210 -1.566 -8.278 -10.304 -10.353 -12.460 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 82 90 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 83 - U - + - ML 267 266 6 269 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 84 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 85 - C - + - ML 273 272 3 275 3 1 1 13 32 -14.190 -0.000 -12.844 -9.274 1.929 -9.685 -2.400 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 86 - g - + - ML 276 275 3 278 3 1 1 12 30 -14.190 -0.000 -12.844 0.965 -4.040 0.989 -8.519 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 87 - A - + - ML 279 278 3 281 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 15 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 88 - U - + - ML 282 281 3 284 3 1 1 9 27 -14.190 -0.000 -12.844 -1.001 -1.224 -0.518 1.247 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 89 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.872 -3.078 -1.474 1.700 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Gln LENG 90 MAXL 176 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:26 2015 COM [1] cmbuild --hand --enone Gln_model.cm aligntRNAdb-Gln.sto NSEQ 282 EFFN 3.954437 CKSUM 477239941 STATS LOCAL MSV -9.0284 0.71872 STATS LOCAL VITERBI -9.7419 0.71872 STATS LOCAL FORWARD -3.5792 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41803 1.68682 1.27275 1.22880 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 0.00000 * 1 3.76955 2.54259 3.60604 0.13798 1 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 2 0.18975 3.69124 2.15213 3.45282 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 3 2.90849 3.82212 0.10602 3.72336 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 4 0.79279 2.82156 0.87521 2.64323 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.04402 3.55130 4.24202 0.81262 0.58644 1.09861 0.40547 5 0.73624 2.15749 1.37943 1.87240 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 6 2.09190 1.44438 1.90083 0.71088 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.04399 3.55242 4.24202 0.81340 0.58581 1.09861 0.40547 7 1.34821 1.61290 1.34519 1.27120 9 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 8 1.84780 2.27712 2.06024 0.49035 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 9 1.41174 2.87379 0.49119 2.43155 11 G + - , 1.38629 1.38629 1.38629 1.38629 0.04399 3.55242 4.24202 0.81340 0.58581 1.09861 0.40547 10 3.02067 3.88208 0.09553 3.82902 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 11 3.75848 2.42832 3.57580 0.15024 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 12 2.66200 3.71462 0.12930 3.60747 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 13 2.64217 1.65551 2.53868 0.41729 16 U = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 14 0.31148 2.85347 2.08011 2.46417 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 15 0.84828 2.12179 1.67700 1.32766 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04399 4.24202 3.55242 1.46634 0.26236 1.09861 0.40547 16 1.66174 1.95584 2.15532 0.59261 19 U + - _ 1.38629 1.38629 1.38629 1.38629 0.23792 4.22764 1.62382 1.46634 0.26236 1.38452 0.28827 17 1.27304 1.99428 1.97685 0.80877 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.59137 0.94570 2.84692 0.33638 1.25299 0.12914 2.11070 18 2.60809 3.48994 0.17505 2.87519 24 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20911 4.20911 1.46634 0.26236 0.47939 0.96538 19 2.31811 3.11719 0.21769 2.93965 25 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04682 4.24202 3.46215 1.46634 0.26236 1.09861 0.40547 20 1.67849 2.21450 2.01226 0.56133 26 U + - _ 1.38629 1.38629 1.38629 1.38629 0.14941 2.08619 4.22489 0.77011 0.62169 0.65073 0.73745 21 0.27138 2.85882 2.40108 2.41111 31 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 22 1.75416 2.70137 0.39577 2.44561 32 G = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 23 3.77907 0.15772 3.54613 2.36196 33 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 24 0.18231 3.72828 2.18782 3.49135 34 A = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 25 3.94080 0.11853 3.70356 2.69253 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 26 1.76417 2.96638 0.36824 2.46242 36 G + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 27 1.24578 2.16081 0.79290 1.93432 37 g = - < 1.38629 1.38629 1.38629 1.38629 0.04682 3.46215 4.24202 0.75276 0.63689 1.09861 0.40547 28 0.22453 3.65294 1.95044 3.41181 39 A = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 29 2.77869 3.77895 0.11630 3.69574 40 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 30 0.47379 3.16701 1.26192 2.95421 41 A = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 31 1.27638 1.70076 1.39273 1.23784 42 u = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 32 1.94908 1.85950 2.25160 0.51648 43 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 33 3.22772 3.09160 3.76341 0.11460 44 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 34 3.22772 3.09160 3.76341 0.11460 45 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 35 3.22772 3.09160 3.76341 0.11460 46 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 36 3.32946 4.27903 0.07385 3.83859 47 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 37 0.43700 2.86876 1.52396 2.53309 48 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 38 0.61678 2.44984 1.46630 1.94328 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 39 1.75326 1.61417 1.44517 0.93642 50 u = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 40 3.16667 1.67186 2.96024 0.33107 51 U = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 41 3.87602 0.13856 3.62393 2.50129 52 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 42 3.61358 2.45287 3.44191 0.15666 53 U = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 43 2.19899 1.01121 1.91376 0.97344 54 u = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 44 0.37385 2.56475 2.24246 2.04960 55 A + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 45 1.05150 2.73016 0.72607 2.28696 56 g + - , 1.38629 1.38629 1.38629 1.38629 1.24628 4.24202 0.35946 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 47 1.80322 1.30587 1.07721 1.49723 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 48 1.80099 1.30655 1.07804 1.49678 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 49 1.80002 1.30685 1.07840 1.49658 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 50 1.79967 1.30696 1.07853 1.49651 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 51 1.79961 1.30698 1.07856 1.49650 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 52 1.79969 1.30695 1.07852 1.49652 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 53 1.13112 1.65303 1.51838 1.32128 64 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 54 1.13112 1.65303 1.51838 1.32128 65 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 55 1.13112 1.65303 1.51838 1.32128 66 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 56 1.13112 1.65303 1.51838 1.32128 67 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 57 1.73092 1.21992 1.16186 1.53841 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 58 1.73079 1.21998 1.16191 1.53837 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 59 1.73074 1.22000 1.16193 1.53835 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 60 1.73082 1.21996 1.16190 1.53838 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 61 1.73116 1.21982 1.16178 1.53848 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 62 1.73194 1.21949 1.16149 1.53871 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.92292 0.01998 63 1.73350 1.21882 1.16092 1.53917 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.05538 2.92103 64 1.84264 3.18112 0.30460 2.77031 75 G + - , 1.38629 1.38629 1.38629 1.38629 0.02949 4.23156 4.23156 1.46634 0.26236 0.77033 0.62150 65 1.09741 2.04934 1.35979 1.27036 76 a + - , 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 66 1.54307 1.65224 1.14146 1.28988 77 g = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 67 2.42760 1.49087 2.21349 0.54947 78 U = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 68 0.41774 3.25607 1.36732 3.03373 79 A = - < 1.38629 1.38629 1.38629 1.38629 0.03995 3.69770 4.24202 0.92077 0.50785 1.09861 0.40547 69 2.78585 3.75175 0.11800 3.64391 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 70 3.00956 3.86572 0.09704 3.80684 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 71 3.22772 3.09160 3.76341 0.11460 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 72 3.22772 3.09160 3.76341 0.11460 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 73 3.16811 0.17561 3.75031 2.34901 85 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 74 0.84724 2.58598 0.93443 2.27042 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 75 0.07833 3.88184 3.54907 3.65073 87 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 76 1.53506 1.81403 1.77249 0.79484 88 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 77 1.89850 2.17791 2.20978 0.46648 89 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 78 3.96711 0.11723 3.71678 2.69743 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 79 3.82171 0.15039 3.59167 2.40587 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 80 3.24014 1.82215 3.04585 0.28554 92 U = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 81 0.70891 2.40582 1.18358 2.19422 93 a = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 82 1.66907 1.57037 1.42435 1.01350 94 u = - > 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 83 1.28233 1.79581 1.32801 1.23233 95 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 84 1.17593 2.07477 0.90617 1.82132 96 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 85 2.27506 1.59088 2.01563 0.57941 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 86 2.87688 1.16234 2.62369 0.58268 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 87 3.90275 0.13569 3.67227 2.50987 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 88 3.66694 2.47049 3.49279 0.15142 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 89 0.15508 3.82028 2.38062 3.53237 101 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02918 4.24202 4.24202 1.46634 0.26236 1.09861 0.40547 90 3.32946 4.27903 0.07385 3.83859 102 G + - : 1.38629 1.38629 1.38629 1.38629 0.01470 4.22753 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Glu STATES 289 NODES 76 CLEN 90 W 130 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:33 2015 COM [1] cmbuild --hand --enone Glu_model.cm aligntRNAdb-Glu.sto COM [2] cmcalibrate --seed 208 Glu_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 4119089519 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.7804 0.71870 ECMLC 0.63123 -6.84597 2.81938 1600000 535617 0.002240 ECMGC 0.31835 -49.49375 -34.17484 1600000 52482 0.007622 ECMLI 0.64172 -6.37805 3.09215 1600000 522970 0.002295 ECMGI 0.33498 -44.84892 -30.48497 1600000 49170 0.008135 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 130 209 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 38 131 210 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 39 131 210 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 101 - A - + MR 3 2 3 5 5 23 46 130 209 -13.126 -0.001 -12.941 -13.153 -14.045 1.393 -4.608 -1.473 -0.041 D 4 2 3 5 5 14 35 128 207 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 38 130 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 100 G U = = MP 6 5 3 10 6 24 46 129 208 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 0.528 -12.435 -13.590 -7.893 -10.336 -9.854 1.042 -10.524 3.642 -7.817 -11.599 -9.723 -8.892 ML 7 5 3 10 6 16 37 127 206 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 37 126 206 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 34 122 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 37 128 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 38 128 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 99 U A = = MP 12 11 6 16 6 23 45 127 206 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.671 -9.692 -10.530 -7.599 -10.650 -9.794 3.911 -10.943 -1.686 -9.332 ML 13 11 6 16 6 16 37 125 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 36 124 204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 33 120 199 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 37 126 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 37 126 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 U A = = MP 18 17 6 22 6 22 43 125 204 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.042 -11.904 -11.685 -9.624 -9.952 -11.673 -6.768 -11.158 -10.413 -9.607 -11.894 -11.182 3.991 -10.562 -4.017 -5.798 ML 19 17 6 22 6 15 36 123 202 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 36 123 202 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 33 119 198 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 37 124 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 37 124 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 C G = = MP 24 23 6 28 6 20 41 123 202 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 3.469 -9.692 -10.530 -7.599 -10.650 -9.795 1.907 -10.943 0.206 -9.332 ML 25 23 6 28 6 15 36 121 200 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 36 121 200 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 33 117 196 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 37 122 201 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 37 122 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 U A = = MP 30 29 6 34 6 19 39 121 200 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.303 -9.692 -10.530 -7.599 -10.650 -9.795 3.137 -10.943 2.237 -9.332 ML 31 29 6 34 6 15 36 119 198 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 35 119 198 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 33 116 195 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 120 199 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 120 199 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 u a = = MP 36 35 6 40 6 17 37 119 198 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.067 -9.692 -10.530 -7.599 -10.650 -9.795 2.955 -10.943 2.635 0.079 ML 37 35 6 40 6 14 35 117 197 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 35 117 196 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 32 115 194 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 36 118 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 36 118 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 a u = = MP 42 41 6 46 4 15 35 117 196 -13.280 -13.487 -0.001 -11.901 -10.099 -8.758 -10.295 2.834 -12.435 -13.564 -7.891 -10.338 -9.854 2.090 -10.523 2.200 -7.817 -11.595 -9.723 -8.893 ML 43 41 6 46 4 13 34 116 195 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 33 115 194 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 32 114 193 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 35 117 196 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 35 117 196 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 115 194 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 32 113 192 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 34 116 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 114 193 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 11 31 113 192 -8.445 -0.004 IL 53 53 3 53 2 12 33 114 194 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 113 192 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 89 168 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 89 168 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 25 G C = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.992 -8.636 -14.236 -6.105 -13.634 -9.805 -7.938 -13.726 -10.004 3.982 -10.199 -2.576 -8.300 -10.270 -10.385 -13.286 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 24 U A = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.979 -11.872 -11.590 -9.422 -9.866 -11.595 -6.520 -11.039 -10.418 -9.404 -11.800 -11.064 3.990 -10.579 -3.822 -5.863 ML 65 63 6 68 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 23 U A = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 22 G C = = MP 76 75 6 80 4 2 3 17 36 -13.280 -13.487 -0.001 -11.901 -12.035 -8.635 -14.479 -6.121 -13.654 -9.791 -7.938 -13.882 -10.006 3.973 -10.195 -2.918 -8.306 -2.912 -10.394 -13.636 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 33 -14.190 -0.033 -5.461 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.157 -0.863 -1.152 1.968 -9.865 -3.540 -9.351 D 86 84 3 87 3 0 0 13 32 -10.229 -5.742 -0.028 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 13 32 -13.295 -0.261 -2.597 -0.884 -2.925 -6.831 1.730 D 89 87 3 90 3 0 0 12 31 -14.501 -10.014 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 12 31 -13.034 -6.138 -0.021 0.171 -2.320 -6.400 1.412 D 92 90 3 93 3 0 0 12 31 -14.753 -0.232 -2.750 IL 93 93 3 93 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 12 31 -13.121 -0.001 -11.775 0.851 -3.877 0.572 -0.642 D 95 93 3 96 3 0 0 10 28 -14.679 -2.914 -0.205 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 97 96 3 99 3 1 1 11 30 -13.316 -3.677 -0.118 -2.452 -3.369 -0.451 1.580 D 98 96 3 99 3 0 0 9 27 -14.475 -9.988 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 12 30 -9.646 -0.006 -8.300 -4.385 -3.995 -5.190 1.949 D 101 99 3 102 3 0 0 7 25 -15.548 -0.001 -9.940 IL 102 102 3 102 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 1 76 155 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 77 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - G - + - ML 109 108 2 111 5 1 1 76 155 -13.126 -0.001 -12.941 -13.153 -14.045 -0.910 -10.150 1.793 -9.302 D 110 108 2 111 5 0 0 74 153 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 76 155 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 48 A U = = MP 112 111 3 116 6 2 2 75 154 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.563 -12.435 -13.590 -7.893 -10.336 -9.854 0.970 -10.524 1.140 -7.817 -11.599 -9.723 -8.892 ML 113 111 3 116 6 1 1 72 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 72 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 68 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 74 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 74 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 47 U A = = MP 118 117 6 122 6 2 2 73 152 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.958 -11.261 -3.769 -7.505 -8.801 -10.594 -4.513 -9.702 -3.332 -7.510 -10.648 -9.501 3.908 -10.953 -1.370 -1.748 ML 119 117 6 122 6 1 1 71 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 70 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 66 145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 72 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 72 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 29 46 G C = = MP 124 123 6 128 6 2 2 71 150 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.929 -8.638 -13.927 -2.112 -13.602 -9.828 -7.936 -13.515 -10.002 3.977 -10.203 -6.555 -8.290 -10.285 -10.370 -12.872 ML 125 123 6 128 6 1 1 69 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 68 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 65 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 70 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 70 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 30 45 A U = = MP 130 129 6 134 6 2 2 69 148 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.093 -2.603 -10.286 3.096 -12.416 -13.526 -7.868 -10.332 -9.850 1.000 -10.518 2.312 -7.798 -2.683 -9.702 -2.779 ML 131 129 6 134 6 1 1 67 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 66 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 63 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 68 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 68 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 44 U G = = MP 136 135 6 140 4 2 2 67 146 -13.280 -13.487 -0.095 -3.975 -11.109 -11.390 -10.426 -7.626 -3.173 -10.571 -0.879 -9.692 -10.530 -7.598 -10.650 -2.614 2.375 -10.943 3.307 -3.582 ML 137 135 6 140 4 1 1 66 145 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 64 143 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 62 142 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 67 146 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 66 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - U - + - ML 142 141 6 144 3 1 1 65 144 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 143 141 6 144 3 0 0 60 139 -11.660 -7.173 -0.010 IL 144 144 3 144 3 1 1 65 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - U - + - ML 145 144 3 147 3 1 1 64 143 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 146 144 3 147 3 0 0 60 139 -11.660 -7.173 -0.010 IL 147 147 3 147 3 1 1 64 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - U - * - ML 148 147 3 150 3 1 1 63 142 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 149 147 3 150 3 0 0 60 139 -11.660 -7.173 -0.010 IL 150 150 3 150 3 1 1 63 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - U - * - ML 151 150 3 153 3 1 1 62 141 -14.096 -0.000 -12.750 -11.205 -9.924 -12.650 1.999 D 152 150 3 153 3 0 0 60 139 -11.660 -7.173 -0.010 IL 153 153 3 153 3 1 1 62 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - C - * - ML 154 153 3 156 3 1 1 61 140 -14.096 -0.000 -12.750 -10.154 1.999 -10.784 -8.873 D 155 153 3 156 3 0 0 60 139 -11.660 -0.022 -6.051 IL 156 156 3 156 3 1 1 61 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - A - + - ML 157 156 3 159 3 1 1 60 139 -3.981 -0.095 -12.844 1.814 -9.104 -1.062 -8.974 D 158 156 3 159 3 0 0 52 131 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 71 150 -0.336 -2.274 -9.949 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -8.332 -8.055 -2.655 1.939 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - U - + - ML 166 165 2 168 3 1 4 50 69 -14.190 -0.000 -12.844 -0.399 -4.146 -4.089 1.645 D 167 165 2 168 3 0 2 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - G - + - ML 169 168 3 171 2 1 3 49 68 -14.843 -0.000 0.529 -3.793 1.295 -4.986 D 170 168 3 171 2 0 2 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 3 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 32 50 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - G - + - ML 231 230 2 233 3 1 2 32 50 -5.907 -0.024 -12.844 -4.428 -10.504 1.982 -9.482 D 232 230 2 233 3 0 0 30 48 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 32 50 -3.401 -0.167 -6.101 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - U - + - ML 234 233 3 236 5 1 2 31 49 -13.126 -0.001 -12.941 -13.153 -14.045 -9.459 -3.519 -10.314 1.967 D 235 233 3 236 5 0 0 30 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 93 C G = = MP 237 236 3 241 6 2 2 30 48 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.812 -9.692 -10.530 -7.600 -10.650 -9.795 0.320 -10.943 -0.548 -9.332 ML 238 236 3 241 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 92 A U = = MP 243 242 6 247 6 2 2 28 46 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.115 -8.796 -10.282 3.519 -11.852 -13.136 -3.471 -3.708 -9.868 -0.925 -10.517 1.483 -1.539 -11.517 -3.139 -0.775 ML 244 242 6 247 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 91 U A = = MP 249 248 6 253 6 2 2 26 44 -5.395 -14.017 -0.035 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.778 -10.571 0.442 -9.692 -10.530 -7.600 -10.650 -9.795 3.769 -10.943 -0.235 -9.332 ML 250 248 6 253 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 25 43 -5.632 -5.895 -1.349 -7.550 -0.833 -7.987 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 76 90 G C = = MP 255 254 6 259 6 2 2 24 42 -14.056 -13.995 -0.001 -12.772 -13.052 -13.447 -11.587 -8.628 -12.830 0.465 -13.416 -9.941 -7.910 -12.660 -9.965 3.859 -10.209 -3.394 -8.215 -10.349 -10.271 -11.567 ML 256 254 6 259 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -9.677 -8.406 -0.160 -8.384 -3.518 -6.598 -3.407 1.879 -4.176 -2.533 D 258 254 6 259 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 77 89 G C = = MP 261 260 6 265 4 2 2 22 40 -13.280 -13.487 -0.057 -4.699 -11.885 -8.640 -13.741 -1.076 -13.580 -9.844 -7.936 -13.381 -10.000 3.954 -10.207 -6.548 -8.283 -10.295 -10.360 -12.635 ML 262 260 6 265 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 78 - U - + - ML 267 266 6 269 3 1 1 20 38 -5.265 -0.038 -12.788 -3.088 -4.759 -2.937 1.893 D 268 266 6 269 3 0 0 19 37 -10.953 -0.119 -3.668 IL 269 269 3 269 3 1 1 20 38 -3.858 -0.120 -6.558 0.000 0.000 0.000 0.000 [ MATL 69 ] 80 - U - + - ML 270 269 3 272 3 1 1 19 37 -14.187 -0.000 -12.841 -2.430 -3.530 -3.144 1.854 D 271 269 3 272 3 0 0 18 36 -7.487 -0.469 -1.878 IL 272 272 3 272 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 81 - A - + - ML 273 272 3 275 3 1 1 18 36 -14.190 -0.000 -12.844 1.391 -3.182 -0.469 -0.878 D 274 272 3 275 3 0 0 17 36 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 82 - g - + - ML 276 275 3 278 3 1 1 17 35 -6.159 -0.021 -12.844 0.755 -3.575 0.903 -1.476 D 277 275 3 278 3 0 0 15 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 17 35 -3.217 -0.191 -5.917 0.000 0.000 0.000 0.000 [ MATL 72 ] 84 - A - + - ML 279 278 3 281 3 1 1 16 34 -14.190 -0.000 -12.844 1.795 -5.076 -3.633 -1.249 D 280 278 3 281 3 0 0 15 34 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 85 - g - + - ML 282 281 3 284 3 1 1 15 33 -4.877 -0.105 -4.779 -1.368 -2.561 0.877 0.684 D 283 281 3 284 3 0 0 13 31 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 17 35 -1.485 -0.650 -7.489 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.812 -3.518 -2.437 1.885 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Glu LENG 90 MAXL 177 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:34 2015 COM [1] cmbuild --hand --enone Glu_model.cm aligntRNAdb-Glu.sto NSEQ 282 EFFN 3.549957 CKSUM 4119089519 STATS LOCAL MSV -9.2308 0.71870 STATS LOCAL VITERBI -9.7026 0.71870 STATS LOCAL FORWARD -3.3724 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37161 1.66146 1.42918 1.14906 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 0.00000 * 1 1.72994 3.24383 0.30777 3.02405 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 2 3.16918 1.76512 2.95854 0.30802 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 3 3.60843 2.33160 3.42085 0.17069 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 4 2.73849 0.62651 2.50685 1.14145 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 5 2.66745 1.30561 2.45420 0.55577 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 6 2.28357 1.45726 2.09805 0.61155 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 7 1.09562 2.72852 0.64832 2.55839 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 8 3.09328 2.97787 3.62592 0.13111 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 9 0.09048 3.74401 3.42206 3.49992 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 10 2.87051 3.75122 0.11178 3.66509 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 11 3.62126 2.33132 3.42676 0.17009 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 12 3.59823 2.38965 3.40938 0.16499 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 13 2.66362 3.39240 0.15442 3.22482 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 14 0.09048 3.74401 3.42206 3.49992 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04711 4.16487 3.49062 1.46634 0.26236 1.09861 0.40547 15 0.13935 3.41197 2.90092 3.16707 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.39665 4.14981 1.16584 1.46634 0.26236 1.37689 0.29084 16 1.62013 1.93700 2.32249 0.57989 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.13876 3.79898 2.23331 1.46634 0.26236 3.12362 0.04499 17 1.30718 1.80961 2.11583 0.80931 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.71466 3.71039 0.72119 1.46634 0.26236 0.23075 1.57959 18 1.01968 1.99723 1.33261 1.42798 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04873 3.73888 3.73888 1.46634 0.26236 1.85806 0.16957 19 1.63681 1.92299 1.79807 0.70601 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.73640 3.80671 0.69526 1.46634 0.26236 3.10826 0.04571 20 1.32818 1.65104 1.73861 1.00124 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08876 3.15907 3.15907 1.46634 0.26236 0.04670 3.08730 21 0.09048 3.74401 3.42206 3.49992 21 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 22 3.49753 0.18144 3.22344 2.34507 22 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 23 0.18803 3.59589 2.22395 3.32990 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 24 0.20026 3.58520 2.12987 3.35523 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 25 3.79396 0.14195 3.56806 2.50569 25 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 26 1.86961 3.21876 0.29118 2.83996 26 G + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 27 0.64274 2.90892 1.03892 2.72143 27 A = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 28 3.46351 2.88837 3.26922 0.13356 28 U = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 29 2.76873 3.68414 0.12217 3.60675 29 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 30 1.17125 2.23476 0.79203 2.03960 30 g = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 31 2.39079 1.48679 2.14524 0.57039 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.07581 4.16487 2.85646 1.46634 0.26236 1.09861 0.40547 32 3.01244 2.90984 3.54305 0.14223 32 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 33 3.01244 2.90984 3.54305 0.14223 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 34 3.01244 2.90984 3.54305 0.14223 34 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 35 3.01244 2.90984 3.54305 0.14223 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 1.74051 0.19289 36 3.35291 0.12271 3.91822 2.80310 36 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12203 4.12203 1.46634 0.26236 0.43211 1.04737 37 0.29005 2.96385 2.03482 2.66718 37 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07581 2.85646 4.16487 1.58490 0.22937 1.09861 0.40547 38 2.45473 2.49396 2.70004 0.26876 43 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 39 1.26152 2.35028 0.68988 2.12192 44 G = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 40 2.32298 1.10764 2.04065 0.81704 45 u = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 41 3.79227 0.14579 3.52716 2.48014 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 42 0.15068 3.45298 2.67880 3.22947 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 43 2.94685 1.44441 2.70696 0.43871 48 U = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 44 1.59318 2.16950 2.44424 0.51803 49 U + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 45 1.08902 2.51338 0.75922 2.16781 50 g + - , 1.38629 1.38629 1.38629 1.38629 1.16914 4.16487 0.39477 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 47 1.80328 1.30585 1.07718 1.49724 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 48 1.80108 1.30652 1.07800 1.49680 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 49 1.80013 1.30681 1.07836 1.49661 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 50 1.79979 1.30692 1.07849 1.49654 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 51 1.79975 1.30693 1.07850 1.49653 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 52 1.79984 1.30690 1.07847 1.49655 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 57 1.73105 1.21987 1.16181 1.53845 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 58 1.73092 1.21992 1.16186 1.53841 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 59 1.73086 1.21995 1.16189 1.53839 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 60 1.73093 1.21992 1.16186 1.53841 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 61 1.73124 1.21979 1.16175 1.53850 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 62 1.73199 1.21947 1.16147 1.53872 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.81517 0.02228 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04507 3.12202 64 2.97969 3.99866 0.10205 3.58025 69 G + - , 1.38629 1.38629 1.38629 1.38629 0.04298 3.62908 4.16487 0.92747 0.50344 1.09861 0.40547 65 2.82431 2.59061 3.34470 0.18584 71 U + - , 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 66 3.04232 0.38318 2.81871 1.55636 72 C = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 67 0.99388 2.00169 1.11939 1.78214 73 a = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 68 2.76420 1.44833 2.54542 0.47229 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.03761 3.84512 4.16487 1.11433 0.39770 1.09861 0.40547 69 2.20003 3.32829 0.20732 3.20425 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 70 2.62028 3.60416 0.13907 3.51180 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.05803 4.16487 3.19784 1.46634 0.26236 1.09861 0.40547 71 2.20985 2.34856 2.63328 0.32444 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05007 3.41417 4.13923 0.78905 0.60564 0.60094 0.79472 72 2.12408 2.27819 2.62344 0.34894 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03160 4.16345 4.16345 1.46634 0.26236 1.04113 0.43549 73 0.72093 2.14261 1.68416 1.55707 81 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 74 1.02117 2.22265 1.06545 1.67701 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04114 3.69801 4.16487 0.98345 0.46843 1.09861 0.40547 75 0.36929 2.52999 2.44554 1.94884 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 76 1.53240 2.01789 1.15400 1.09161 85 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08080 3.26885 3.22965 0.86161 0.54902 1.09861 0.40547 77 2.27673 2.29721 2.56856 0.32823 88 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03235 4.14054 4.14054 1.46634 0.26236 0.57942 0.82149 78 3.69935 0.16466 3.44205 2.35304 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 79 3.42058 0.24320 3.15840 1.96114 90 C = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 80 0.57093 2.71248 1.24109 2.53125 91 A = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 81 2.07814 1.41830 1.81161 0.75647 92 u = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 82 1.87791 2.97954 0.30774 2.79417 93 G = - > 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 83 2.79300 1.04369 2.53177 0.67906 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 84 1.09118 2.26851 0.88802 1.90219 95 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 85 0.92889 2.62285 0.80916 2.43975 96 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 86 1.40383 2.67654 0.50467 2.50296 97 G = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 87 0.19889 3.59570 2.13363 3.36637 98 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 88 0.36225 3.12588 1.57582 2.93458 99 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 89 3.24349 1.51793 3.04435 0.36502 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03156 4.16487 4.16487 1.46634 0.26236 1.09861 0.40547 90 0.72439 2.15961 1.93305 1.36530 101 a + - : 1.38629 1.38629 1.38629 1.38629 0.01590 4.14922 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Gly STATES 289 NODES 76 CLEN 90 W 104 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:47 2015 COM [1] cmbuild --hand --enone Gly_model.cm aligntRNAdb-Gly.sto COM [2] cmcalibrate --seed 208 Gly_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1209562705 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.5222 0.71867 ECMLC 0.57077 -7.86349 2.59640 1600000 469890 0.002554 ECMGC 0.27945 -46.04138 -29.01193 1600000 46643 0.008576 ECMLI 0.56203 -7.60541 2.92677 1600000 446622 0.002687 ECMGI 0.29361 -40.91744 -24.88889 1600000 44247 0.009040 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 104 133 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 18 39 106 134 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 40 106 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - A - + MR 3 2 3 5 5 24 47 104 133 -13.126 -0.001 -12.941 -13.153 -14.045 1.999 -10.184 -9.419 -9.524 D 4 2 3 5 5 15 35 103 132 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 38 105 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 A U = = MP 6 5 3 10 6 24 47 103 132 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.517 -12.435 -13.579 -7.892 -10.337 -9.854 1.896 -10.523 -0.297 -7.817 -11.597 -9.723 -8.893 ML 7 5 3 10 6 16 37 102 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 37 102 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 13 33 99 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 38 103 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 38 103 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 U A = = MP 12 11 6 16 6 24 45 101 130 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -1.392 -10.571 2.774 -9.692 -10.530 -7.598 -10.650 -9.793 3.064 -10.943 -1.333 -9.332 ML 13 11 6 16 6 16 36 100 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 36 100 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 13 33 97 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 37 101 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 38 101 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 U A = = MP 18 17 6 22 6 23 43 99 128 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 0.468 -10.571 0.893 -9.692 -10.530 -7.600 -10.650 -9.795 3.670 -10.943 -6.480 -9.332 ML 19 17 6 22 6 16 36 98 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 36 98 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 13 33 95 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 37 99 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 37 99 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 C G = = MP 24 23 6 28 6 21 41 97 126 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -1.381 -10.571 3.283 -9.692 -10.530 -7.598 -10.650 -9.793 2.472 -10.943 -1.679 -9.332 ML 25 23 6 28 6 16 36 96 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 36 96 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 33 93 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 37 97 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 37 97 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 U A = = MP 30 29 6 34 6 19 39 95 124 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.627 -0.570 -10.571 2.082 -9.692 -10.530 -7.598 -10.650 -9.794 3.373 -10.943 -0.483 -9.332 ML 31 29 6 34 6 15 35 94 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 35 94 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 91 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 95 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 95 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 U A = = MP 36 35 6 40 6 17 37 93 122 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.031 -11.270 -10.383 -2.928 -0.166 -10.549 1.490 -2.232 -10.476 -7.410 -10.612 -9.575 3.550 -10.885 -2.469 -4.207 ML 37 35 6 40 6 15 35 92 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 92 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 90 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 36 93 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 36 93 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 U A = = MP 42 41 6 46 4 15 35 91 120 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 1.266 -9.692 -10.530 -7.599 -10.650 -9.795 3.757 -10.943 -4.124 -9.332 ML 43 41 6 46 4 14 34 91 120 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 90 119 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 32 89 118 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 35 92 121 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 91 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 89 118 -14.190 -0.000 -12.844 -7.178 -4.891 -4.730 1.971 D 49 47 6 50 3 12 32 88 117 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 34 90 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 88 117 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 11 31 87 116 -8.445 -0.004 IL 53 53 3 53 2 13 33 89 118 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 87 116 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 55 84 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 55 84 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 37 66 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 29 G C = = MP 58 57 1 62 6 2 3 37 66 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.707 -8.646 -13.127 -2.248 -13.491 -9.917 -7.934 -12.908 -9.991 3.860 -10.222 0.323 -8.255 -10.342 -10.319 -11.901 ML 59 57 1 62 6 1 1 35 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 35 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 32 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 36 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 36 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 28 U A = = MP 64 63 6 68 6 2 3 35 64 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.107 -11.378 -10.426 -7.616 -8.779 -10.573 -1.813 -9.693 -10.529 -7.591 -10.650 -9.765 3.971 -10.944 -6.482 -9.331 ML 65 63 6 68 6 1 1 33 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 33 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 31 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 34 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 34 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 27 A U = = MP 70 69 6 74 6 2 3 33 62 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 71 69 6 74 6 1 1 32 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 31 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 29 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 33 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 32 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 26 U G = = MP 76 75 6 80 4 2 2 31 60 -13.280 -13.487 -0.009 -7.371 -11.109 -11.391 -3.118 -7.627 -8.777 -10.571 -0.848 -9.692 -10.530 -7.599 -10.650 -9.794 0.269 -10.943 3.818 -9.332 ML 77 75 6 80 4 1 1 31 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 30 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 29 58 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 32 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 31 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - a - + - ML 82 81 6 84 3 1 1 29 58 -14.182 -0.057 -4.695 0.867 -0.969 -3.321 0.646 D 83 81 6 84 3 0 0 27 56 -8.495 -4.008 -0.097 IL 84 84 3 84 3 1 1 30 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 28 57 -14.125 -0.600 -1.556 1.825 -3.236 -2.210 -2.898 D 86 84 3 87 3 0 0 27 56 -11.150 -6.663 -0.015 IL 87 87 3 87 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - u - + - ML 88 87 3 90 3 1 1 27 56 -13.526 -0.879 -1.133 0.528 -0.114 -6.276 0.696 D 89 87 3 90 3 0 0 27 56 -14.176 -9.689 -0.002 IL 90 90 3 90 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 26 55 -12.648 -3.059 -0.185 -0.709 -0.163 -5.810 1.309 D 92 90 3 93 3 0 0 27 56 -15.005 -0.238 -2.718 IL 93 93 3 93 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - A - + - ML 94 93 3 96 3 1 1 27 56 -13.451 -0.000 -12.105 1.086 -0.455 -0.845 -0.758 D 95 93 3 96 3 0 0 24 53 -14.296 -1.858 -0.466 IL 96 96 3 96 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - c - + - ML 97 96 3 99 3 1 1 26 55 -13.695 -0.739 -1.319 0.445 0.593 -2.739 -0.028 D 98 96 3 99 3 0 0 20 49 -13.833 -9.346 -0.002 IL 99 99 3 99 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 26 54 -1.928 -0.441 -11.610 -1.246 0.169 -6.249 1.288 D 101 99 3 102 3 0 0 20 49 -6.209 -0.022 -9.205 IL 102 102 3 102 3 1 1 27 56 -0.921 -1.087 -9.645 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.915 -9.301 -9.231 -2.145 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.665 -1.910 -2.522 -1.361 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 A U = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.067 -2.585 -7.885 3.177 -9.016 -8.481 -1.983 -3.812 -8.323 2.418 -8.569 -0.853 -1.810 -4.213 -6.090 -2.355 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 u a = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.400 -8.102 -8.399 -2.581 -2.863 -4.128 2.587 0.091 -8.257 -2.252 -8.770 -3.698 2.935 -8.582 -1.036 -2.990 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.104 -11.363 -10.426 -7.602 -0.802 -10.576 -4.494 -9.694 -10.527 -7.581 -10.650 -9.730 3.940 -10.945 -6.485 -9.330 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.475 -8.655 -12.521 -0.275 -13.362 -10.034 -7.929 -12.402 -9.979 3.798 -10.245 0.317 -8.210 -10.414 -10.255 -11.223 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.421 -9.329 -7.134 3.986 -11.961 -12.372 -8.478 -6.968 -10.296 -5.972 -10.809 -3.299 -8.430 -11.576 -10.050 -6.991 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.355 1.889 -9.796 -1.769 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.752 -4.391 -10.649 1.982 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 1 6 50 70 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - + - ML 166 165 2 168 3 1 6 50 70 -14.190 -0.000 -12.844 -0.056 -0.135 -4.826 1.065 D 167 165 2 168 3 0 5 48 69 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 5 49 69 -14.843 -0.000 1.882 -9.296 -1.685 -9.071 D 170 168 3 171 2 0 4 48 68 -8.445 -0.004 IL 171 171 3 171 2 1 6 50 70 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 68 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 33 53 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 3 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - G - + - ML 231 230 2 233 3 1 5 33 53 -5.376 -0.035 -12.844 -1.378 -10.303 1.853 -9.373 D 232 230 2 233 3 0 1 31 52 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 3 33 53 -3.813 -0.124 -6.513 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - U - + - ML 234 233 3 236 5 1 5 32 52 -13.126 -0.001 -12.941 -13.153 -14.045 -1.136 0.325 -2.348 1.068 D 235 233 3 236 5 0 0 31 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 2 32 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 92 U A = = MP 237 236 3 241 6 2 6 31 51 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.085 -10.571 1.185 -9.692 -10.530 -7.599 -10.650 -9.795 3.735 -10.943 -2.665 -9.332 ML 238 236 3 241 6 1 2 29 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 2 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 2 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 91 U A = = MP 243 242 6 247 6 2 6 29 49 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.426 -7.627 -4.109 -10.571 2.946 -9.692 -10.530 -7.599 -10.650 -9.794 3.019 -10.943 -3.143 -9.332 ML 244 242 6 247 6 1 2 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 2 27 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 2 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 2 28 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 90 u a = = MP 249 248 6 253 6 2 5 27 47 -14.078 -6.098 -0.022 -12.794 -13.073 -13.468 -9.928 -9.802 -9.657 -2.415 -3.442 -10.141 2.913 -9.056 -9.621 -1.980 -9.960 -7.541 2.924 -9.982 -1.608 -8.374 ML 250 248 6 253 6 1 2 26 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 2 25 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 2 27 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 3 26 46 -4.301 -0.118 -7.813 -5.980 -7.086 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 88 G C = = MP 255 254 6 259 6 2 3 25 45 -14.078 -14.017 -0.054 -12.794 -7.395 -5.032 -11.284 -3.462 -12.113 1.375 -13.237 -10.147 -7.911 -12.049 -9.966 3.714 -10.264 -2.485 -8.158 -10.477 -10.185 -10.787 ML 256 254 6 259 6 1 2 25 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 2 24 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 2 25 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 2 24 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 87 G C = = MP 261 260 6 265 4 2 2 23 43 -13.225 -13.432 -0.902 -1.106 -11.238 -0.771 -12.062 1.350 -13.066 -10.020 -2.240 -12.047 -9.899 3.659 -10.182 -6.363 -8.008 -10.344 -10.011 -10.778 ML 262 260 6 265 4 1 1 24 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 43 -6.588 -5.617 -3.484 -0.185 -1.510 1.556 -2.325 -0.972 D 264 260 6 265 4 0 0 21 41 -8.579 -8.260 -0.970 -1.048 IL 265 265 5 265 4 1 1 26 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - U - + - ML 267 266 6 269 3 1 2 21 42 -4.701 -0.057 -11.936 -0.193 -0.689 -1.347 1.079 D 268 266 6 269 3 0 0 20 41 -14.515 -0.123 -3.618 IL 269 269 3 269 3 1 1 21 42 -3.628 -0.141 -6.328 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 20 41 -14.136 -0.000 -12.790 -0.069 -0.948 -1.267 1.079 D 271 269 3 272 3 0 0 19 40 -10.915 -0.038 -5.307 IL 272 272 3 272 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - A - + - ML 273 272 3 275 3 1 1 19 40 -14.190 -0.017 -6.411 1.101 0.365 -3.164 -1.135 D 274 272 3 275 3 0 0 18 38 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 18 39 -5.009 -0.046 -12.827 1.223 -1.341 -1.410 -0.160 D 277 275 3 278 3 0 0 14 34 -9.350 -0.114 -3.742 IL 278 278 3 278 3 1 1 21 41 -1.309 -0.759 -7.462 0.000 0.000 0.000 0.000 [ MATL 72 ] 83 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.190 -0.031 -5.559 1.623 -1.500 -2.803 -1.244 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 84 - a - + - ML 282 281 3 284 3 1 1 6 12 -5.150 -0.553 -1.786 0.868 0.041 -1.594 -0.294 D 283 281 3 284 3 0 0 6 12 -0.094 -5.649 -4.528 IL 284 284 3 284 3 1 1 6 12 -4.681 -0.066 -7.381 0.000 0.000 0.000 0.000 [ MATL 74 ] 86 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.197 0.992 -6.971 0.836 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Gly LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:47 2015 COM [1] cmbuild --hand --enone Gly_model.cm aligntRNAdb-Gly.sto NSEQ 282 EFFN 5.658417 CKSUM 1209562705 STATS LOCAL MSV -8.7206 0.71867 STATS LOCAL VITERBI -9.6060 0.71867 STATS LOCAL FORWARD -3.7946 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17432 1.53733 1.63632 1.26825 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 0.00000 * 1 0.57393 3.35968 1.02501 3.14293 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 2 2.83444 0.87637 2.60548 0.79609 2 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 3 3.17663 1.29795 2.98555 0.45465 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 4 2.88120 0.64960 2.65014 1.04686 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 5 2.79268 1.09655 2.57670 0.63734 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 6 2.39080 1.22293 2.23239 0.67963 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 7 3.46466 1.44667 3.27862 0.36286 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 8 3.00591 2.87152 3.37568 0.15117 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 9 0.04873 4.34243 3.98092 4.14237 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 10 2.83203 3.88773 0.10821 3.76471 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 11 4.10994 2.54398 3.97269 0.12080 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 12 0.09230 4.18384 2.89591 4.03510 12 A = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 13 3.50850 1.91880 3.55537 0.22978 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02813 4.44715 4.13346 1.46634 0.26236 1.09861 0.40547 14 0.97496 1.78565 2.23923 1.05394 14 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05364 4.44282 3.20727 1.46634 0.26236 1.21446 0.35222 15 0.28232 2.67335 2.43299 2.41715 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.32203 4.41370 1.33479 1.46634 0.26236 1.75936 0.18893 16 1.15634 1.50782 2.23670 1.02957 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.39907 4.12454 1.16192 1.46634 0.26236 3.27878 0.03840 17 1.49755 1.52501 2.19951 0.80331 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.67148 3.77255 0.76345 1.46634 0.26236 0.20497 1.68561 18 0.89797 1.68456 1.78292 1.43158 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03402 4.09090 4.09090 1.46634 0.26236 1.26685 0.33089 19 1.17108 1.25029 2.14847 1.24867 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.35850 4.20242 1.25066 1.46634 0.26236 2.66704 0.07199 20 1.62262 1.42104 2.30417 0.77367 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.20519 1.80069 3.89598 0.86657 0.54541 0.05240 2.97499 21 0.14182 3.40814 3.36728 2.73900 25 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 22 2.08616 3.70046 0.19903 3.45466 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 23 4.22469 3.29544 3.97860 0.07299 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 24 0.13871 4.12990 2.39017 3.82507 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 25 3.91180 0.17364 3.69811 2.16605 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 26 0.43970 2.22175 2.37073 1.87119 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 27 1.09552 2.36639 0.77785 2.18548 31 g = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 28 2.12024 1.03707 1.95069 0.95886 32 u = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 29 4.38574 2.83256 4.26004 0.08931 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 30 2.39447 3.59165 0.16321 3.44794 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 31 0.09606 4.38371 2.76589 4.12320 35 A = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 32 3.41710 0.16367 4.00359 2.30342 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 33 3.39919 3.07399 3.92460 0.10468 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 34 3.67839 3.48046 4.22228 0.07335 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 35 4.10410 0.05959 4.58928 3.46788 39 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 36 4.10410 0.05959 4.58928 3.46788 40 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 37 0.04873 4.34243 3.98092 4.14237 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 38 0.04873 4.34243 3.98092 4.14237 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 39 4.31234 3.23372 4.17585 0.07061 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 40 3.66603 0.23447 3.41522 1.89335 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 41 0.09067 4.42034 2.83787 4.12900 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 42 1.10442 2.12146 0.97723 1.75801 46 g = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 43 2.47607 0.87830 2.19693 0.94342 47 c = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 44 1.38346 1.49406 2.42096 0.83013 48 u + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 45 0.16781 3.52256 2.42196 3.31841 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.45141 4.44715 0.28230 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 47 1.80306 1.30592 1.07727 1.49719 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 48 1.80073 1.30663 1.07814 1.49673 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 49 1.79970 1.30695 1.07852 1.49652 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 50 1.79931 1.30707 1.07867 1.49644 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 51 1.79922 1.30710 1.07870 1.49642 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 52 1.79928 1.30708 1.07868 1.49643 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 53 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 54 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 55 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 57 1.73052 1.22009 1.16201 1.53829 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 58 1.73043 1.22013 1.16204 1.53826 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 59 1.73041 1.22014 1.16205 1.53826 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 60 1.73054 1.22009 1.16200 1.53829 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 61 1.73093 1.21992 1.16186 1.53841 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 62 1.73180 1.21955 1.16154 1.53867 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.19544 0.01518 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03059 3.50229 64 2.26363 3.79971 0.17254 3.43812 68 G + - , 1.38629 1.38629 1.38629 1.38629 0.04225 3.51797 4.44715 0.66160 0.72572 1.09861 0.40547 65 1.67873 1.29967 2.28081 0.82425 70 u + - , 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 66 3.22843 1.41014 3.01466 0.40465 71 U = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 67 3.10978 0.79288 2.88024 0.80580 72 c = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 68 2.56141 0.88034 2.30335 0.89590 73 c = - < 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 69 1.83635 3.30918 0.27237 3.15857 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.05241 4.44715 3.23527 1.46634 0.26236 1.09861 0.40547 70 1.67166 2.82573 0.37116 2.76679 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.45780 4.41912 1.03484 1.46634 0.26236 0.96060 0.48234 71 1.36183 1.66552 1.93093 0.89232 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06128 3.18333 4.01778 0.71817 0.66874 0.14308 2.01505 72 1.33262 1.77358 1.94578 0.85893 78 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02439 4.41895 4.41895 1.46634 0.26236 0.46554 0.98831 73 0.82360 1.36064 2.30355 1.58596 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03263 4.44715 3.89276 1.46634 0.26236 1.09861 0.40547 74 0.78364 1.92090 1.96820 1.35838 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04785 3.35496 4.43843 0.83682 0.56754 0.76493 0.62617 75 0.47455 2.10198 2.38954 1.80818 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 76 0.96871 1.48954 1.99710 1.35007 84 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29575 3.43362 1.49721 0.61473 0.77824 1.09861 0.40547 77 1.90830 0.96081 2.62356 0.92498 86 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06100 4.20884 3.11656 1.46634 0.26236 0.09956 2.35635 78 3.01095 0.39967 2.64963 1.56287 87 C = - > 1.38629 1.38629 1.38629 1.38629 0.02427 4.42367 4.42367 1.46634 0.26236 0.51337 0.91249 79 3.39228 0.31125 3.12372 1.66155 88 C = - > 1.38629 1.38629 1.38629 1.38629 0.03510 3.78186 4.44715 0.83050 0.57240 1.09861 0.40547 80 1.00599 2.46747 0.79190 2.33784 90 g = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 81 0.87847 3.04903 0.73351 2.86541 91 g = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 82 0.44264 3.17834 1.32685 2.98198 92 A = - > 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 83 0.40365 3.43811 1.34655 3.22230 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 84 0.71899 2.40857 1.19468 2.12015 94 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 85 0.70336 2.75057 1.01016 2.56357 95 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 86 1.13319 2.82434 0.60205 2.64565 96 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 87 0.41167 3.15260 1.41809 2.94615 97 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 88 0.87105 2.78175 0.80863 2.60246 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 89 3.38134 1.23342 3.16128 0.45834 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02370 4.44715 4.44715 1.46634 0.26236 1.09861 0.40547 90 0.04873 4.34243 3.98092 4.14237 100 A + - : 1.38629 1.38629 1.38629 1.38629 0.01192 4.43536 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME His STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:53:37 2015 COM [1] cmbuild --hand --enone His_model.cm aligntRNAdb-His.sto COM [2] cmcalibrate --seed 208 His_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 758269300 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.3237 0.71870 ECMLC 0.55494 -8.85494 2.04328 1600000 507832 0.002363 ECMGC 0.26951 -42.46794 -24.85056 1600000 46147 0.008668 ECMLI 0.58105 -7.87479 2.44022 1600000 480998 0.002495 ECMGI 0.28117 -38.07984 -21.32147 1600000 44505 0.008988 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 118 -13.075 -14.320 -0.031 -5.552 IL 1 1 2 1 4 20 40 100 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 21 42 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - C - + MR 3 2 3 5 5 25 48 99 118 -13.096 -0.001 -12.911 -13.123 -14.015 -4.458 1.927 -8.535 -2.753 D 4 2 3 5 5 17 37 95 114 -8.312 -3.667 -5.938 -0.189 -5.363 IR 5 5 3 5 5 20 40 99 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 G C = = MP 6 5 3 10 6 26 47 98 117 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -11.983 -8.606 -14.312 -6.083 -13.608 -9.769 -7.906 -13.764 -2.555 3.981 -10.168 -6.539 -8.272 -10.236 -10.357 -13.407 ML 7 5 3 10 6 18 39 96 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 17 37 94 113 -10.054 -8.783 -4.691 -8.761 -0.077 -6.974 -3.379 -3.085 -4.165 1.899 D 9 5 3 10 6 15 35 93 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 40 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 40 97 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 U A = = MP 12 11 6 16 6 25 45 96 115 -14.048 -4.790 -0.054 -12.764 -13.044 -13.439 -11.079 -11.361 -10.396 -7.598 -2.616 -10.541 0.292 -9.662 -10.500 -7.569 -10.620 -9.765 3.862 -10.913 -4.211 -9.302 ML 13 11 6 16 6 18 38 94 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 36 92 111 -10.054 -8.783 -4.691 -8.761 -3.895 -0.170 1.933 -4.339 -3.814 -4.053 D 15 11 6 16 6 15 35 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 40 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 22 43 94 114 -5.335 -0.056 -8.846 -7.013 -8.119 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 98 A U = = MP 18 17 6 22 6 23 44 93 113 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -2.319 -1.318 -10.264 3.811 -12.405 -13.560 -7.863 -2.475 -9.824 -0.519 -10.494 -1.621 -7.787 -11.569 -9.693 -2.795 ML 19 17 6 22 6 17 37 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 17 37 92 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 15 35 89 108 -12.611 -11.309 -7.106 -7.788 -7.805 -0.024 IL 22 22 5 22 6 19 39 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 19 39 93 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 97 A U = = MP 24 23 6 28 6 22 42 91 111 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -0.294 -2.407 -3.468 3.511 -12.165 -12.860 -7.549 -10.243 -9.774 1.272 -10.418 -0.143 -2.524 -11.245 -9.415 -8.780 ML 25 23 6 28 6 16 36 90 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 16 36 90 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 35 88 107 -12.611 -11.309 -7.106 -7.788 -0.121 -3.881 IL 28 28 5 28 6 16 37 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 37 91 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 96 A U = = MP 30 29 6 34 6 20 40 89 109 -14.048 -13.987 -0.001 -12.764 -13.044 -13.439 -8.628 -1.925 -8.502 3.541 -3.418 -9.267 -4.821 -9.088 -0.786 1.432 -9.117 -2.551 -1.675 -2.783 -6.819 -4.710 ML 31 29 6 34 6 15 35 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 17 37 88 107 -10.054 -8.783 -0.121 -8.761 -3.895 -6.974 -3.379 -3.085 -4.165 1.899 D 33 29 6 34 6 12 32 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 89 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 95 U A = = MP 36 35 6 40 6 18 38 87 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.779 -10.571 0.468 -9.692 -10.530 -7.600 -10.650 -9.796 3.822 -10.943 -2.578 -9.332 ML 37 35 6 40 6 15 35 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 36 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 36 87 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 94 A U = = MP 42 41 6 46 4 16 36 85 105 -13.280 -13.487 -0.001 -11.901 -10.099 -3.101 -10.294 3.881 -12.434 -13.589 -7.892 -10.336 -9.854 -0.846 -10.524 -2.407 -2.158 -2.534 -9.722 -8.892 ML 43 41 6 46 4 14 34 86 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 86 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 12 32 85 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 15 35 88 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 14 34 83 102 -14.190 -0.000 -12.844 -4.858 -4.907 -8.039 1.974 D 49 47 6 50 3 12 32 82 102 -6.174 -1.687 -0.566 IL 50 50 3 50 3 14 34 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 13 33 82 101 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 12 32 81 101 -8.445 -0.004 IL 53 53 3 53 2 13 33 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 12 32 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 27 G C = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.565 -8.651 -12.738 -0.646 -13.414 -9.985 -7.931 -12.587 -9.984 3.832 -10.236 0.142 -8.228 -10.384 -10.281 -11.462 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 26 U A = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 25 U A = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -4.292 -10.571 -0.697 -9.692 -10.530 -7.600 -10.650 -9.796 3.876 -10.943 -0.651 -9.332 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 U A = = MP 76 75 6 80 4 2 2 17 36 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -2.084 -1.944 -10.530 -7.599 -10.650 -9.794 3.904 -10.943 -0.950 -9.332 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 33 -14.190 -0.000 -12.844 1.987 -9.997 -9.373 -4.890 D 83 81 6 84 3 0 0 17 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.190 -0.524 -1.716 1.776 -1.929 -2.406 -3.006 D 86 84 3 87 3 0 0 16 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - c - + - ML 88 87 3 90 3 1 1 13 31 -13.667 -1.370 -0.706 -0.019 0.922 -4.472 0.103 D 89 87 3 90 3 0 0 11 30 -13.899 -9.412 -0.002 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - c - + - ML 91 90 3 93 3 1 1 12 30 -3.695 -5.401 -0.153 0.258 0.703 -5.047 0.197 D 92 90 3 93 3 0 0 11 30 -15.159 -1.106 -0.901 IL 93 93 3 93 3 1 1 13 31 -3.645 -0.140 -6.346 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 12 30 -12.744 -0.001 -11.398 1.706 -6.450 -0.727 -3.047 D 95 93 3 96 3 0 0 10 28 -14.953 -1.165 -0.852 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - + - ML 97 96 3 99 3 1 1 10 29 -13.568 -4.517 -0.065 1.585 -0.559 -2.536 -2.744 D 98 96 3 99 3 0 0 9 27 -14.102 -9.615 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 6 14 -9.061 -0.010 -7.715 -1.834 0.552 -2.699 1.070 D 101 99 3 102 3 0 0 6 14 -5.630 -0.035 -7.979 IL 102 102 3 102 3 1 1 8 15 -3.583 -0.146 -6.283 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.180 -9.415 -9.520 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -4.924 -0.049 -12.941 -13.153 -14.045 1.844 -2.573 -2.705 -3.482 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -5.222 -0.061 -6.901 -8.733 -8.006 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.986 -11.201 -10.357 -7.373 -0.615 -3.150 1.262 -3.641 -1.553 -7.306 -10.589 -9.456 3.589 -2.774 -2.944 -3.549 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.389 -10.426 -7.624 -2.597 -10.570 0.711 -2.446 -10.529 -7.595 -10.649 -9.790 3.717 -10.942 -0.355 -3.969 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -0.791 -2.178 -10.294 3.921 -12.425 -13.584 -7.885 -10.336 -9.854 -5.421 -10.524 -6.046 -7.814 -11.599 -9.716 -8.892 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.057 -2.820 -14.618 -6.130 -13.665 -0.821 -7.939 -13.967 -10.007 3.906 -10.194 -1.872 -8.309 -10.256 -10.399 -13.850 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.193 -1.478 -10.072 3.720 -9.277 -11.064 -1.476 -4.108 -9.886 -0.906 -10.336 -6.785 0.327 -10.744 -2.514 -3.952 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -4.781 -0.404 -7.808 1.680 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.310 -3.020 -10.146 1.954 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.718 -8.378 -4.992 1.987 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.917 -9.502 -2.189 -9.180 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.749 -2.129 -1.480 -4.303 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - u - + - ML 166 165 2 168 3 1 6 50 69 -14.190 -0.000 -12.844 0.428 0.290 -7.213 0.511 D 167 165 2 168 3 0 5 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 7 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - + - ML 169 168 3 171 2 1 5 49 68 -14.843 -0.000 1.613 -1.517 -1.070 -3.127 D 170 168 3 171 2 0 4 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 6 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 29 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 5 29 47 -4.390 -0.071 -12.844 1.865 -7.579 -3.645 -1.876 D 232 230 2 233 3 0 0 28 46 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 29 47 -4.656 -0.068 -7.356 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 5 28 46 -13.126 -0.001 -12.941 -13.153 -14.045 -2.349 0.064 -7.652 1.461 D 235 233 3 236 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 29 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 93 A U = = MP 237 236 3 241 6 2 5 27 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.180 -2.130 -10.294 3.849 -12.435 -13.590 -7.893 -10.336 -9.854 -0.267 -10.524 -1.742 -7.818 -11.599 -9.724 -8.892 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 28 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 92 G C = = MP 243 242 6 247 6 2 5 25 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.875 -8.611 -13.668 1.735 -13.438 -3.735 -7.821 -13.462 -9.985 3.607 -10.179 -3.006 -8.176 -1.878 -10.227 -12.697 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 91 A U = = MP 249 248 6 253 6 2 4 23 41 -5.580 -14.017 -0.031 -12.794 -13.073 -13.468 -10.099 -0.188 -10.294 3.498 -12.435 -13.576 -7.892 -10.337 -9.854 1.874 -10.523 -2.766 -7.817 -11.597 -9.723 -8.893 ML 250 248 6 253 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -5.470 -5.733 -3.651 -0.199 -8.164 -7.825 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 90 A U = = MP 255 254 6 259 6 2 2 21 39 -14.047 -13.987 -0.101 -5.628 -13.043 -4.414 -10.067 -0.362 -10.262 3.654 -12.402 -13.550 -7.859 -10.305 -9.823 1.230 -10.492 -2.580 -7.784 -3.290 -9.690 -8.861 ML 256 254 6 259 6 1 1 23 41 -9.527 -9.873 -4.587 -0.077 -9.723 -7.252 1.935 -4.383 -3.856 -4.098 MR 257 254 6 259 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 89 G C = = MP 261 260 6 265 4 2 2 19 36 -13.147 -13.354 -0.034 -5.438 -2.895 0.830 -4.017 -0.973 -1.845 -3.614 -3.950 -4.071 -8.192 3.610 -8.438 -2.530 -1.333 -7.607 -2.112 -6.719 ML 262 260 6 265 4 1 1 22 40 -1.591 -7.704 -0.618 -6.434 0.610 0.807 -2.563 -0.848 MR 263 260 6 265 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 18 36 -9.138 -8.819 -0.049 -5.090 IL 265 265 5 265 4 1 1 22 40 -4.303 -4.986 -0.133 -7.471 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - c - + - ML 267 266 6 269 3 1 1 17 34 -3.978 -0.095 -12.814 0.232 0.803 -3.277 -0.032 D 268 266 6 269 3 0 0 15 33 -10.116 -0.066 -4.507 IL 269 269 3 269 3 1 1 17 34 -2.283 -0.339 -7.987 0.000 0.000 0.000 0.000 [ MATL 69 ] 80 - U - + - ML 270 269 3 272 3 1 1 15 32 -14.190 -0.000 -12.844 -2.384 -0.691 -2.167 1.569 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 81 - C - + - ML 273 272 3 275 3 1 1 14 31 -14.190 -0.000 -12.844 -0.580 1.061 -2.820 0.141 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 82 - A - + - ML 276 275 3 278 3 1 1 13 29 -5.871 -0.025 -12.844 1.774 -2.791 -2.225 -2.179 D 277 275 3 278 3 0 0 14 32 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 13 30 -3.427 -0.164 -6.128 0.000 0.000 0.000 0.000 [ MATL 72 ] 84 - A - + - ML 279 278 3 281 3 1 1 12 28 -14.190 -0.005 -8.164 1.500 -1.078 -2.791 -0.854 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 85 - A - + - ML 282 281 3 284 3 1 1 10 21 -3.819 -0.301 -3.089 1.468 -0.607 -2.414 -1.358 D 283 281 3 284 3 0 0 8 19 -7.905 -3.418 -0.148 IL 284 284 3 284 3 1 1 11 22 -2.463 -0.295 -8.119 0.000 0.000 0.000 0.000 [ MATL 74 ] 88 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.046 1.049 -3.888 -0.267 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME His LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:53:37 2015 COM [1] cmbuild --hand --enone His_model.cm aligntRNAdb-His.sto NSEQ 282 EFFN 5.383026 CKSUM 758269300 STATS LOCAL MSV -9.1386 0.71870 STATS LOCAL VITERBI -9.7211 0.71870 STATS LOCAL FORWARD -3.3914 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.10098 1.67536 1.65477 1.24106 1.38629 1.38629 1.38629 1.38629 0.04025 4.41852 3.59713 1.46634 0.26236 0.00000 * 1 3.07726 3.96197 0.08973 3.87710 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 2 3.37240 1.65925 3.18490 0.30921 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 3 0.21269 3.15741 2.31292 2.99406 3 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 4 0.88544 2.24645 1.04666 2.03573 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 5 1.00795 1.97668 1.12646 1.75836 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 0.63108 0.75932 6 3.24904 1.57435 3.05339 0.34694 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 7 0.19265 3.46885 2.28279 3.16819 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 8 3.03771 2.95498 3.64038 0.13498 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 9 0.05201 4.27855 3.92033 4.07570 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 10 2.50446 3.65878 0.14734 3.52282 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 11 4.34826 3.03366 4.22910 0.07865 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 12 3.54532 1.95985 3.35965 0.22877 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 13 3.81637 2.47189 3.64092 0.14233 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 14 0.06713 4.03772 3.77155 3.71822 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 15 0.33356 2.35268 2.43493 2.29347 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.28659 4.41852 1.43915 1.46634 0.26236 1.09861 0.40547 16 1.35291 1.07468 2.30735 1.20204 16 c + - _ 1.38629 1.38629 1.38629 1.38629 0.57635 4.16353 0.86156 1.46634 0.26236 3.07618 0.04723 17 1.24145 1.32125 2.04758 1.15459 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.64531 2.81966 0.87737 0.72631 0.66105 0.78378 0.61005 18 0.52567 2.35048 1.78069 1.93104 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04639 3.78695 3.78695 1.46634 0.26236 0.82487 0.57677 19 0.56859 1.81811 2.18276 1.84127 20 A + - _ 1.38629 1.38629 1.38629 1.38629 1.05740 4.11847 0.45197 1.46634 0.26236 2.40863 0.09424 20 1.30943 1.45758 1.76569 1.12037 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08496 3.20090 3.20090 1.46634 0.26236 0.03609 3.33985 21 0.05220 4.27483 3.91681 4.07180 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02445 4.41638 4.41638 1.46634 0.26236 0.99307 0.46273 22 0.17311 3.80164 2.27184 3.39636 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 23 0.28648 3.51313 1.70221 3.29643 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 24 0.09118 4.40295 2.85788 4.04474 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 25 3.69834 0.21287 3.46537 1.99724 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 26 0.26402 2.59848 2.56896 2.51283 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.04966 3.31344 4.41852 0.56731 0.83713 1.09861 0.40547 27 1.93409 1.36963 1.81915 0.82308 30 u = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 28 2.62952 1.43819 2.41450 0.50897 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 29 0.07875 4.30388 3.09315 4.08296 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 30 2.79168 3.20816 0.14076 3.52157 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 31 0.83755 1.92710 1.42989 1.70197 34 a = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 32 2.55813 1.71989 3.13746 0.35657 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 33 3.16825 2.72710 3.68693 0.14218 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 34 3.68965 4.67345 0.05051 4.20413 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 35 3.04981 2.97079 3.42574 0.14059 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 36 3.68965 4.67345 0.05051 4.20413 39 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 37 0.14122 3.58668 2.65561 3.38855 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 38 0.34486 2.42823 2.16928 2.41653 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 39 1.92352 1.52953 1.73896 0.77313 42 u = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 40 3.73347 0.14961 3.46837 2.47837 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 41 3.82096 3.32353 4.12000 0.07707 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 42 0.60588 2.59019 1.26714 2.32517 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 43 0.90285 1.99393 1.26086 1.74286 46 a = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 44 1.18329 1.32788 2.39684 1.08564 47 u + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 45 0.47354 2.15361 1.97894 2.09615 48 A + - , 1.38629 1.38629 1.38629 1.38629 1.42279 4.41852 0.29182 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 47 1.80308 1.30591 1.07726 1.49720 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 48 1.80077 1.30662 1.07812 1.49673 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 49 1.79974 1.30693 1.07851 1.49653 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 50 1.79935 1.30705 1.07865 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 51 1.79927 1.30708 1.07868 1.49643 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 52 1.79933 1.30706 1.07866 1.49644 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 53 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 54 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 55 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 57 1.73057 1.22007 1.16199 1.53831 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 58 1.73047 1.22011 1.16203 1.53828 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 59 1.73045 1.22012 1.16203 1.53827 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 60 1.73057 1.22007 1.16199 1.53831 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 61 1.73096 1.21991 1.16185 1.53842 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 62 1.73182 1.21954 1.16154 1.53867 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.15846 0.01576 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03176 3.46532 64 0.21723 3.04514 2.82303 2.42773 67 A + - , 1.38629 1.38629 1.38629 1.38629 0.06119 3.05124 4.41852 0.44944 1.01607 1.09861 0.40547 65 2.11700 1.43885 2.85187 0.53671 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 66 0.22508 3.54806 1.98591 3.33782 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 67 1.63059 2.70621 0.42118 2.51177 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 68 0.62131 3.02271 1.03521 2.83126 72 A = - < 1.38629 1.38629 1.38629 1.38629 0.04064 3.58367 4.41852 0.71792 0.66897 1.09861 0.40547 69 0.69236 2.61512 1.08697 2.41677 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.06047 4.41852 3.06566 1.46634 0.26236 1.09861 0.40547 70 1.62013 2.19452 0.58334 2.01977 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.05342 3.74506 3.56188 0.84989 0.55767 0.41674 1.07644 71 1.26064 1.09836 2.30617 1.26066 77 c + - _ 1.38629 1.38629 1.38629 1.38629 0.07377 2.83231 4.40305 0.50716 0.92181 0.63105 0.75936 72 2.03235 1.76995 2.40693 0.49669 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 73 1.55302 0.93026 2.35911 1.20585 81 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 74 0.34060 2.49411 2.38290 2.17325 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03739 3.70289 4.41852 0.79546 0.60034 1.09861 0.40547 75 0.58555 1.92678 2.29481 1.62556 84 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02694 4.41852 4.23152 1.46634 0.26236 1.09861 0.40547 76 0.60285 1.79282 2.24062 1.71554 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.17821 2.74262 2.31430 0.45988 0.99793 1.16491 0.37390 77 1.34486 0.97072 2.38002 1.31652 88 c + - _ 1.38629 1.38629 1.38629 1.38629 0.10307 4.32529 2.46852 1.46634 0.26236 0.21389 1.64731 78 2.22532 0.58819 2.04351 1.57473 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02612 4.35118 4.35118 1.46634 0.26236 0.49964 0.93331 79 2.68979 1.13785 2.41733 0.64925 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.02479 4.40267 4.40267 1.46634 0.26236 0.62480 0.76651 80 3.06772 1.06614 2.82114 0.59856 91 U = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 81 2.84895 0.46856 2.54018 1.43825 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 82 3.36520 2.19556 3.34237 0.19992 93 U = - > 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 83 3.43303 2.43516 3.28096 0.17134 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 84 0.37977 3.21327 1.48530 3.00939 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 85 1.91819 1.25316 1.78924 0.91520 96 u = - ) 1.38629 1.38629 1.38629 1.38629 0.04025 4.41852 3.59713 1.46634 0.26236 1.09861 0.40547 86 2.11040 1.20171 2.03125 0.80529 97 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02478 4.40305 4.40305 1.46634 0.26236 1.45247 0.26656 87 3.19191 2.45350 3.00649 0.19425 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.05292 3.23639 4.40305 0.53733 0.87781 0.63108 0.75932 88 0.33910 3.34649 1.56586 3.13564 100 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02440 4.41852 4.41852 1.46634 0.26236 1.09861 0.40547 89 3.80866 0.11423 3.81697 2.75234 101 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04025 4.41852 3.59713 1.46634 0.26236 1.09861 0.40547 90 3.17568 0.15350 3.85989 2.53243 102 C + - : 1.38629 1.38629 1.38629 1.38629 0.01247 4.39073 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Ile STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:53:50 2015 COM [1] cmbuild --hand --enone Ile_model.cm aligntRNAdb-Ile.sto COM [2] cmcalibrate --seed 208 Ile_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3863379960 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.2093 0.71877 ECMLC 0.48493 -11.25528 2.11163 1600000 783916 0.001531 ECMGC 0.31402 -51.01420 -34.87057 1600000 63635 0.006286 ECMLI 0.49664 -10.67094 2.31789 1600000 759867 0.001579 ECMGI 0.33525 -46.08676 -31.20653 1600000 58691 0.006815 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 38 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 39 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 21 47 97 116 -13.126 -0.001 -12.941 -13.153 -14.045 1.810 -9.099 -1.032 -8.971 D 4 2 3 5 5 12 34 96 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 38 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 A U = = MP 6 5 3 10 6 22 46 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.961 -12.429 -13.586 -7.888 -10.336 -9.854 -5.420 -10.524 -1.376 -7.816 -11.599 -9.719 -8.892 ML 7 5 3 10 6 14 36 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 36 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 32 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 37 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 37 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 G C = = MP 12 11 6 16 6 21 44 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 13 11 6 16 6 14 36 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 36 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 32 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 37 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 37 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 A U = = MP 18 17 6 22 6 20 43 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.290 3.973 -12.417 -13.578 -7.878 -10.331 -9.855 -1.949 -10.524 -6.046 -7.812 -11.598 -9.710 -8.891 ML 19 17 6 22 6 13 35 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 35 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 32 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 36 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 37 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 A U = = MP 24 23 6 28 6 18 41 90 109 -3.139 -14.017 -0.174 -12.794 -13.073 -13.468 -2.077 -8.759 -10.294 3.958 -12.432 -13.588 -7.890 -10.336 -9.854 -5.420 -10.524 -2.451 -7.816 -11.599 -9.721 -8.892 ML 25 23 6 28 6 13 35 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 35 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 32 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 39 89 108 -7.745 -8.008 -0.017 -9.663 -10.440 -10.100 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 36 90 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 91 A U = = MP 30 29 6 34 6 16 39 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 31 29 6 34 6 13 35 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 34 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 32 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 36 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 36 88 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 90 U A = = MP 36 35 6 40 6 14 37 86 105 -3.139 -14.017 -0.174 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 0.890 -10.571 -0.319 -9.692 -10.530 -7.600 -10.650 -9.796 3.707 -10.943 -1.891 -9.332 ML 37 35 6 40 6 12 34 86 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 33 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 31 84 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 36 85 104 -7.745 -8.008 -0.017 -9.663 -10.440 -10.100 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 35 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 89 A U = = MP 42 41 6 46 4 12 35 84 103 -13.280 -13.487 -0.001 -11.901 -10.100 -8.760 -10.290 3.974 -12.417 -13.578 -7.878 -10.331 -9.855 -1.966 -10.524 -6.046 -7.812 -11.598 -9.710 -8.891 ML 43 41 6 46 4 11 33 85 104 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 32 85 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 31 83 103 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 34 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 34 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 10 33 82 101 -14.190 -0.000 -12.844 -9.745 -4.371 -10.641 1.982 D 49 47 6 50 3 9 31 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 33 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - G - + - ML 51 50 3 53 2 9 32 81 100 -14.843 -0.000 -8.771 -10.361 1.824 -1.135 D 52 50 3 53 2 8 31 80 99 -8.445 -0.004 IL 53 53 3 53 2 10 32 82 101 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 31 80 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 12 28 U A = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 59 57 1 62 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 C G = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 3.817 -9.693 -10.530 -7.599 -10.650 -9.793 -5.510 -10.943 0.897 -9.332 ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -2.165 -10.571 -2.085 -9.693 -10.530 -7.599 -10.650 -9.793 3.955 -10.943 -6.480 -9.332 ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 G A = = MP 76 75 6 80 4 2 2 18 36 -13.280 -13.487 -0.001 -11.901 -10.125 -8.802 -10.298 -5.114 -11.938 -13.266 -7.472 -10.308 3.762 -2.038 -10.528 -1.776 0.893 -11.570 -9.345 -8.906 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.190 -0.178 -3.111 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 16 34 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - C - + - ML 85 84 3 87 3 1 1 15 33 -14.013 -0.031 -5.562 -3.155 1.367 -4.650 0.343 D 86 84 3 87 3 0 0 13 31 -12.514 -8.027 -0.006 IL 87 87 3 87 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - A - + - ML 88 87 3 90 3 1 1 14 32 -13.982 -7.086 -0.011 1.872 -2.900 -4.062 -2.774 D 89 87 3 90 3 0 0 13 31 -12.727 -8.240 -0.005 IL 90 90 3 90 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - a - + - ML 91 90 3 93 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 92 90 3 93 3 0 0 10 29 -15.602 -11.115 -0.001 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - a - + - ML 94 93 3 96 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 95 93 3 96 3 0 0 10 28 -15.602 -5.156 -0.041 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - A - + - ML 97 96 3 99 3 1 1 13 32 -9.313 -2.416 -0.302 1.953 -4.850 -4.304 -4.566 D 98 96 3 99 3 0 0 8 26 -15.561 -11.074 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - a - + - ML 100 99 3 102 3 1 1 7 15 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 101 99 3 102 3 0 0 6 14 -5.781 -0.028 -9.993 IL 102 102 3 102 3 1 1 8 16 -3.492 -0.156 -6.192 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.235 -9.325 1.495 -8.999 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.063 -11.168 -10.422 -7.418 -8.821 -10.612 -4.532 -9.709 -10.503 -7.445 -10.646 -9.310 3.967 -1.816 -6.522 -9.314 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.156 -11.397 -10.491 -7.685 -8.844 -10.635 -4.583 -9.765 -10.518 -7.664 -10.714 -9.798 3.967 -10.913 -1.750 -8.487 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 C G = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.863 -9.692 -10.530 -7.600 -10.650 -9.795 0.360 -10.943 -2.799 -9.332 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.105 -2.101 -10.426 -7.605 -8.781 -10.575 0.524 -9.694 -10.528 -7.583 -10.650 -9.738 3.838 -10.945 -6.484 -9.331 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.982 -10.014 -4.370 -9.442 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -8.727 -10.497 1.998 -9.485 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 50 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 4 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 3 50 68 -14.190 -0.000 -12.844 1.983 -10.029 -4.522 -9.450 D 167 165 2 168 3 0 1 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - + - ML 169 168 3 171 2 1 2 49 67 -14.843 -0.000 -1.361 -2.036 -4.551 1.733 D 170 168 3 171 2 0 1 48 66 -8.445 -0.004 IL 171 171 3 171 2 1 2 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 48 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -3.101 -0.179 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.157 -0.002 -9.811 1.991 -7.269 -6.587 -6.748 D 217 215 6 218 3 0 0 9 28 -15.423 -10.936 -0.001 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - A - + - ML 219 218 3 221 3 1 1 13 31 -11.157 -0.002 -9.811 1.991 -7.269 -6.587 -6.748 D 220 218 3 221 3 0 0 8 27 -15.423 -10.936 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.157 -0.002 -9.811 -6.823 -6.181 -7.746 1.990 D 223 221 3 224 3 0 0 7 25 -15.423 -10.936 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.991 -7.269 -6.587 -6.748 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 29 48 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 1 29 48 -0.188 -3.035 -12.844 1.303 -1.077 -0.881 -0.953 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 28 47 -8.705 -0.004 -11.405 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -4.325 -8.536 -9.711 1.980 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 88 A U = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.294 3.796 -12.421 -13.581 -7.881 -10.336 -9.854 -2.147 -10.524 -6.046 -7.813 -11.599 -9.713 0.891 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 87 G C = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.892 -8.640 -13.771 -6.066 -13.585 -9.841 -7.937 -13.404 -10.000 3.822 -10.206 0.868 -8.285 -10.293 -10.363 -12.673 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 86 A U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.100 -0.117 -10.295 3.429 -12.435 -13.558 -7.891 -10.338 -9.854 2.064 -10.523 -3.198 -7.817 -11.594 -9.723 -8.894 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 73 85 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.917 -2.324 -13.877 -1.685 -13.598 -9.832 -7.937 -13.480 -10.001 3.951 -10.204 -6.553 -8.289 -10.287 -10.369 -12.807 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 74 84 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.025 -5.859 -11.913 0.928 -13.858 -6.074 -13.596 -9.833 -7.937 -13.466 -10.001 3.789 -10.205 -2.047 -8.288 -10.288 -10.368 -12.783 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 75 - U - + - ML 267 266 6 269 3 1 1 15 34 -4.996 -0.046 -12.820 -0.960 -1.573 -5.252 1.643 D 268 266 6 269 3 0 0 15 33 -9.844 -0.080 -4.236 IL 269 269 3 269 3 1 1 15 34 -4.107 -0.100 -6.807 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -3.667 -1.409 -1.580 1.683 D 271 269 3 272 3 0 0 17 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - u - + - ML 273 272 3 275 3 1 1 13 31 -14.190 -0.000 -12.844 -0.800 -0.057 -0.908 0.950 D 274 272 3 275 3 0 0 16 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - A - + - ML 276 275 3 278 3 1 1 12 30 -4.681 -0.243 -3.111 1.457 -1.974 -0.450 -1.904 D 277 275 3 278 3 0 0 10 29 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 12 30 -4.399 -0.081 -7.099 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 11 29 -14.013 -0.000 -12.667 1.980 -9.816 -4.243 -9.258 D 280 278 3 281 3 0 0 10 29 -12.514 -8.027 -0.006 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - A - + - ML 282 281 3 284 3 1 1 9 27 -14.013 -0.036 -5.354 1.355 -3.469 0.402 -5.007 D 283 281 3 284 3 0 0 9 27 -12.514 -8.027 -0.006 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 83 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -6.535 1.367 -4.897 0.461 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Ile LENG 90 MAXL 178 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:53:50 2015 COM [1] cmbuild --hand --enone Ile_model.cm aligntRNAdb-Ile.sto NSEQ 282 EFFN 2.904510 CKSUM 3863379960 STATS LOCAL MSV -9.0096 0.71877 STATS LOCAL VITERBI -9.7568 0.71877 STATS LOCAL FORWARD -2.9611 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17294 1.74811 1.51257 1.21706 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 0.00000 * 1 0.27598 3.20433 1.88175 3.03105 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 2 2.74703 3.49014 0.13596 3.42629 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 3 0.28004 3.07220 1.92255 2.96244 3 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 4 0.24928 3.12412 2.07487 2.97415 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.11247 2.42444 4.02600 0.36361 1.18797 1.09861 0.40547 5 0.25197 3.08641 2.06060 3.00199 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 6 2.48502 1.29315 2.29828 0.61278 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.11247 2.42444 4.02600 0.36361 1.18797 1.09861 0.40547 7 0.28071 3.06693 1.92322 2.95552 9 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 8 2.70590 2.57303 3.22600 0.20191 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 9 2.25977 2.90704 0.32428 2.13755 11 G + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 10 3.28403 2.13251 3.05841 0.22687 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 11 2.95085 0.40603 2.73055 1.53139 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 12 3.14622 1.92344 2.93225 0.27759 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 13 2.15571 2.00139 0.57714 1.67382 15 G = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 14 0.11791 3.49355 3.19341 3.22393 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11247 4.02600 2.42444 1.46634 0.26236 1.09861 0.40547 15 1.84684 0.83979 2.42914 1.13211 17 c + - _ 1.38629 1.38629 1.38629 1.38629 0.05196 3.95270 3.46005 1.46634 0.26236 1.94030 0.15509 16 0.36036 2.41071 2.38829 2.11168 18 A + - _ 1.38629 1.38629 1.38629 1.38629 0.94467 3.94040 0.52467 1.46634 0.26236 2.02781 0.14113 17 1.13112 1.65303 1.51838 1.32128 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 18 1.13112 1.65303 1.51838 1.32128 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.94883 0.05382 19 0.92059 1.79726 1.59266 1.45851 21 a + - _ 1.38629 1.38629 1.38629 1.38629 0.13718 3.13292 2.46984 1.46634 0.26236 3.10411 0.04590 20 1.13112 1.65303 1.51838 1.32128 22 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09258 3.11881 3.11881 1.46634 0.26236 0.05648 2.90189 21 0.11791 3.49355 3.19341 3.22393 24 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 22 0.59116 2.07711 1.82334 1.83548 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 23 0.30964 3.09254 1.79472 2.90539 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 24 2.10864 2.88646 0.28013 2.70103 27 G = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 25 0.26006 3.23138 1.96657 3.00468 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 26 1.25339 2.71738 0.59740 2.32097 29 G + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 27 3.32186 2.48462 3.07052 0.18133 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 28 3.26740 2.05898 3.04250 0.24004 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 29 0.25048 3.09459 2.06244 3.01320 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 30 2.99161 0.36715 2.76499 1.63933 33 C = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 31 2.31716 1.45310 2.09021 0.60891 34 U = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 32 2.85113 2.77471 3.37714 0.16758 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 33 2.85113 2.77471 3.37714 0.16758 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 34 2.95695 3.86740 0.11086 3.44060 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 35 0.11791 3.49355 3.19341 3.22393 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 36 2.85113 2.77471 3.37714 0.16758 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 37 0.14699 3.32615 2.92091 3.06009 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 38 2.95695 3.86740 0.11086 3.44060 41 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 39 0.68768 2.21989 1.30764 2.13557 42 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 40 1.87575 2.92647 0.31584 2.74894 43 G = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 41 3.23887 2.38671 2.90369 0.20575 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 42 0.28143 3.21196 1.85622 3.02084 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 43 0.20622 3.17276 2.31428 3.08739 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 44 0.14434 3.33999 2.94220 3.07440 47 A + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 45 1.80595 1.98284 2.47580 0.48791 48 U + - , 1.38629 1.38629 1.38629 1.38629 1.03027 4.02600 0.46961 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 47 1.80341 1.30581 1.07714 1.49726 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 48 1.80128 1.30646 1.07793 1.49684 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 49 1.80037 1.30674 1.07827 1.49665 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 50 1.80006 1.30684 1.07839 1.49659 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 51 1.80003 1.30685 1.07840 1.49658 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 52 1.80014 1.30681 1.07836 1.49661 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.01034 0.14381 53 0.65986 2.02172 1.84534 1.64674 56 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08017 3.25659 3.25659 1.46634 0.26236 3.49880 0.03070 54 0.65986 2.02172 1.84534 1.64674 57 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08017 3.25659 3.25659 1.46634 0.26236 3.49880 0.03070 55 1.51519 1.73047 1.94484 0.77648 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08017 3.25659 3.25659 1.46634 0.26236 3.49880 0.03070 56 0.65986 2.02172 1.84534 1.64674 59 A + - _ 1.38629 1.38629 1.38629 1.38629 0.26086 3.25659 1.65502 1.46634 0.26236 3.49880 0.03070 57 1.73133 1.21975 1.16171 1.53853 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 58 1.73118 1.21981 1.16177 1.53849 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 59 1.73110 1.21985 1.16180 1.53846 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 60 1.73114 1.21983 1.16178 1.53847 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 61 1.73141 1.21971 1.16168 1.53855 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 62 1.73209 1.21942 1.16144 1.53875 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.61191 0.02737 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.05551 2.91876 64 0.80843 1.83352 1.78541 1.48340 67 a + - , 1.38629 1.38629 1.38629 1.38629 0.84958 0.58958 4.02600 0.06316 2.79349 1.09861 0.40547 65 2.50299 2.56035 3.08370 0.22930 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 66 0.43216 2.65644 1.81844 2.13353 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 67 2.41833 3.20131 0.19353 3.07532 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 68 0.91359 2.42272 0.90019 2.26582 72 g = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 69 2.42983 3.31209 0.18068 3.19892 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 70 2.00805 3.01482 0.27382 2.87842 74 G = - < 1.38629 1.38629 1.38629 1.38629 0.04715 4.02600 3.56814 1.46634 0.26236 1.09861 0.40547 71 1.68622 1.88055 2.41484 0.55705 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05663 3.29607 4.01559 0.79281 0.60252 0.81769 0.58241 72 1.91572 1.88182 2.18877 0.53035 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 73 1.45645 1.50659 1.85024 0.94656 78 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 74 0.70216 2.03633 1.67791 1.67549 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.13947 3.17845 2.42444 0.71009 0.67649 1.09861 0.40547 75 0.17089 3.18497 2.80060 2.90162 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03916 3.95270 3.95270 1.46634 0.26236 1.94030 0.15509 76 0.70971 2.28943 1.33468 1.94038 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05398 3.95270 3.40095 1.46634 0.26236 1.94030 0.15509 77 1.94831 0.82124 2.48583 1.09559 83 c + - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93846 3.93846 1.46634 0.26236 0.30089 1.34770 78 3.10534 0.27560 2.83312 1.98599 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 79 3.40361 0.20835 3.14004 2.19333 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 80 2.50099 0.97248 2.22772 0.83915 86 u = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 81 3.28437 0.27649 3.02062 1.86225 87 C = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 82 2.75228 2.05398 2.46274 0.32463 88 U = - > 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 83 3.17010 2.22168 2.87457 0.23176 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 84 0.62045 2.46645 1.29448 2.26939 90 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 85 3.22306 2.38433 2.89711 0.20723 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 86 3.09250 2.37042 2.93376 0.21323 92 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 87 3.18535 2.22163 2.88095 0.23052 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 88 3.63059 0.16086 3.33877 2.44635 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 89 3.25840 2.26915 3.01557 0.21179 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03634 4.02600 4.02600 1.46634 0.26236 1.09861 0.40547 90 0.32997 2.80093 1.99037 2.48104 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01834 4.00800 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME LeuTAA STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:07 2015 COM [1] cmbuild --hand --enone Leu-TAA_model.cm aligntRNAdb-Leu-TAA.sto COM [2] cmcalibrate --seed 208 Leu-TAA_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 858466697 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.6547 0.71870 ECMLC 0.58317 -8.02654 2.41365 1600000 528841 0.002269 ECMGC 0.33602 -54.53102 -39.68853 1600000 58619 0.006824 ECMLI 0.56834 -7.99938 2.65996 1600000 513102 0.002339 ECMGI 0.36272 -49.31211 -35.77814 1600000 54207 0.007379 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 121 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 43 104 122 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 44 104 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 98 - A - + MR 3 2 3 5 5 24 51 102 121 -13.126 -0.001 -12.941 -13.153 -14.045 1.969 -4.192 -8.517 -5.125 D 4 2 3 5 5 14 39 101 120 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 42 102 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 97 G C = = MP 6 5 3 10 6 24 51 101 120 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.213 -8.663 -11.975 1.526 -13.191 -10.197 -7.906 -11.926 -9.961 3.661 -2.217 -2.055 -8.139 -10.505 -10.159 -10.640 ML 7 5 3 10 6 15 41 100 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 41 99 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 38 97 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 42 101 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 42 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 96 U A = = MP 12 11 6 16 6 23 49 99 118 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.748 -10.571 -1.934 -9.692 -10.530 -7.600 -10.650 -9.796 3.934 -3.278 -2.418 -9.332 ML 13 11 6 16 6 15 41 98 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 40 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 38 95 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 42 99 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 42 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 95 U A = = MP 18 17 6 22 6 21 48 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.375 -12.061 -12.226 -11.310 -10.427 -12.099 -9.614 -11.882 -10.388 -11.302 -12.423 -11.901 3.995 -10.488 -5.341 -5.528 ML 19 17 6 22 6 15 40 96 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 40 96 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 37 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 41 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 41 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 94 A U = = MP 24 23 6 28 6 19 46 95 114 -6.148 -14.017 -0.024 -12.794 -8.778 -13.468 -10.099 -8.759 -10.294 3.800 -12.426 -13.584 -7.885 -10.336 -9.854 1.027 -10.524 -6.046 -7.814 -11.599 -9.717 -8.892 ML 25 23 6 28 6 14 40 94 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 40 94 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 37 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 43 94 113 -4.991 -5.254 -0.116 -6.909 -7.686 -7.346 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 41 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 93 a u = = MP 30 29 6 34 6 17 44 93 112 -14.075 -14.014 -0.001 -12.791 -13.070 -13.465 -9.856 0.065 -9.966 2.961 -2.708 -12.018 -7.071 -10.145 -9.699 2.730 -10.296 -1.951 -7.145 -10.754 -8.982 -3.330 ML 31 29 6 34 6 14 40 92 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 40 92 111 -7.822 -6.551 -0.687 -6.529 -1.663 -4.743 -0.452 0.949 -1.191 -0.150 D 33 29 6 34 6 10 37 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 40 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 40 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 92 G C = = MP 36 35 6 40 6 15 42 91 110 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.426 -8.724 -10.727 -0.029 -12.669 -11.399 -7.895 -10.753 -9.894 3.885 -10.425 -6.172 -7.931 -11.090 -9.869 -2.247 ML 37 35 6 40 6 13 39 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 39 90 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 37 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 40 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 40 91 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 91 G C = = MP 42 41 6 46 4 13 40 89 108 -13.280 -13.487 -0.001 -11.901 -10.588 -4.616 -10.952 2.058 -12.742 -10.913 -7.834 -10.985 -9.902 3.437 -10.365 -0.081 -7.930 -10.852 -9.881 -9.579 ML 43 41 6 46 4 12 38 90 109 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 38 90 109 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 37 89 108 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 39 91 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 39 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 11 38 87 106 -14.190 -0.015 -6.643 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 9 36 86 105 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 38 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 10 37 86 105 -14.829 -0.000 -2.339 -10.421 1.926 -9.428 D 52 50 3 53 2 9 36 85 104 -8.943 -0.003 IL 53 53 3 53 2 10 37 87 106 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 36 85 104 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 17 46 65 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 17 46 65 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 27 46 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 29 G C = = MP 58 57 1 62 6 2 2 27 46 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.776 -8.643 -13.343 -1.619 -13.527 -9.887 -7.935 -13.080 -9.995 3.927 -10.216 -1.140 -8.266 -10.323 -10.336 -12.152 ML 59 57 1 62 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 C G = = MP 64 63 6 68 6 2 2 25 44 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 65 63 6 68 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 A U = = MP 70 69 6 74 6 2 2 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.100 -1.058 -10.294 3.951 -12.415 -13.578 -7.876 -10.335 -9.855 -5.421 -10.524 -6.047 -7.811 -11.598 -9.709 -8.893 ML 71 69 6 74 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 G U = = MP 76 75 6 80 4 2 2 21 40 -13.280 -13.487 -0.001 -11.901 -2.760 -0.631 -10.294 -3.363 -12.435 -13.590 -7.893 -10.336 -2.488 -0.181 -2.744 3.796 -7.818 -11.599 -9.724 -8.892 ML 77 75 6 80 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 18 37 -14.190 -0.000 -12.844 1.984 -10.035 -4.588 -9.453 D 83 81 6 84 3 0 0 22 40 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - + - ML 85 84 3 87 3 1 1 17 36 -14.190 -0.000 -12.844 -2.646 -10.456 1.940 -9.453 D 86 84 3 87 3 0 0 20 39 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - C - + - ML 88 87 3 90 3 1 1 16 34 -14.190 -0.008 -7.538 -0.934 1.513 -7.501 -0.695 D 89 87 3 90 3 0 0 19 38 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - C - + - ML 91 90 3 93 3 1 1 14 33 -0.166 -3.204 -12.837 -1.702 1.667 -7.693 -0.966 D 92 90 3 93 3 0 0 15 33 -8.385 -0.233 -2.777 IL 93 93 3 93 3 1 1 13 32 -5.576 -0.031 -11.446 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - G - + - ML 94 93 3 96 3 1 1 12 31 -14.190 -0.000 -12.844 -3.368 -10.485 1.964 -9.470 D 95 93 3 96 3 0 0 16 35 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - G - + - ML 97 96 3 99 3 1 1 11 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 98 96 3 99 3 0 0 15 34 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - + - ML 100 99 3 102 3 1 1 5 8 -0.009 -7.294 -12.844 -2.307 -0.116 -4.082 1.494 D 101 99 3 102 3 0 0 3 6 -6.174 -1.687 -0.566 IL 102 102 3 102 3 1 1 4 7 -8.882 -0.004 -11.582 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.536 -4.391 0.069 -8.559 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 -1.394 -9.692 -10.530 -7.599 -10.650 -9.795 3.868 -3.166 -0.180 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -3.022 -10.294 3.840 -12.435 -13.590 -7.893 -10.336 -9.854 0.416 -10.524 -2.305 -7.818 -11.599 -9.724 -8.892 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 3.272 -10.294 2.520 -12.430 -13.587 -7.889 -10.336 -9.854 -1.082 -10.524 -6.045 -7.816 -3.296 -9.720 -8.892 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.394 1.872 -9.852 -1.572 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.377 -9.092 0.484 -9.008 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 0.235 1.407 -4.708 -2.908 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - + - ML 166 165 2 168 3 1 2 49 68 -14.190 -0.033 -5.474 -2.110 0.112 -3.808 1.388 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 1 48 67 -14.810 -0.000 1.328 -1.321 -3.468 -0.003 D 170 168 3 171 2 0 0 47 66 -9.397 -0.002 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -13.489 -13.170 -4.364 -0.072 IL 214 214 5 214 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - C - + - ML 216 215 6 218 3 1 1 14 33 -9.992 -0.005 -8.646 -0.486 1.020 -2.877 0.167 D 217 215 6 218 3 0 0 9 28 -15.530 -6.578 -0.015 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - C - + - ML 219 218 3 221 3 1 1 13 31 -10.223 -0.203 -2.936 -3.321 1.034 -4.347 0.851 D 220 218 3 221 3 0 0 8 26 -15.516 -11.029 -0.001 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - u - + - ML 222 221 3 224 3 1 1 12 30 -10.025 -3.128 -0.177 0.033 0.252 -2.334 0.667 D 223 221 3 224 3 0 0 7 25 -15.528 -11.041 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 29 48 -14.190 -0.071 -4.379 IL 230 230 2 230 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - a - + - ML 231 230 2 233 3 1 1 29 48 -0.024 -5.910 -12.773 0.643 0.631 -1.793 -0.734 D 232 230 2 233 3 0 0 28 46 -1.228 -0.854 -5.661 IL 233 233 3 233 3 1 1 28 47 -5.916 -0.025 -11.550 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - C - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -10.276 1.999 -10.915 -8.979 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 90 A U = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.937 -12.434 -13.590 -7.892 -10.336 -9.854 -1.550 -10.524 -1.653 -7.817 -11.599 -9.723 -8.892 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 89 G C = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.022 -2.596 -14.400 -6.116 -13.647 -9.795 -7.938 -13.832 -10.005 3.982 -10.196 -6.570 -8.304 -10.264 -10.391 -13.519 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 88 A U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -5.317 -0.037 -12.794 -13.073 -13.468 -10.099 -0.521 -10.294 3.898 -12.434 -13.590 -7.892 -10.336 -9.854 -5.420 -10.524 -1.507 -7.817 -11.599 -9.723 -8.892 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 22 40 -4.913 -0.076 -8.424 -6.592 -7.697 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 86 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.019 -1.653 -14.385 -6.115 -13.646 -9.796 -7.938 -13.823 -10.005 3.968 -10.197 -6.570 -8.304 -10.264 -10.390 -13.497 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 85 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.004 -8.502 -11.878 -0.162 -13.713 -1.804 -13.578 -9.846 -7.937 -13.361 -9.999 3.887 -10.207 -6.547 -8.283 -10.297 -10.360 -12.600 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 267 266 6 269 3 1 1 15 34 -14.187 -0.000 -12.841 -11.312 -10.022 -12.769 1.999 D 268 266 6 269 3 0 0 18 36 -7.621 -0.421 -2.013 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - C - + - ML 273 272 3 275 3 1 1 13 31 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 11 30 -14.190 -0.000 -12.844 1.987 -10.063 -4.946 -9.467 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - a - + - ML 282 281 3 284 3 1 1 7 14 -5.290 -0.038 -12.844 0.910 0.433 -4.078 -0.490 D 283 281 3 284 3 0 0 6 13 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 7 14 -3.884 -0.117 -6.584 0.000 0.000 0.000 0.000 [ MATL 74 ] 84 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -9.055 -1.756 -9.866 1.888 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME LeuTAA LENG 90 MAXL 181 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:07 2015 COM [1] cmbuild --hand --enone Leu-TAA_model.cm aligntRNAdb-Leu-TAA.sto NSEQ 282 EFFN 2.784027 CKSUM 858466697 STATS LOCAL MSV -9.3773 0.71870 STATS LOCAL VITERBI -9.8342 0.71870 STATS LOCAL FORWARD -3.2691 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30183 1.48807 1.45493 1.31400 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 0.00000 * 1 1.71931 2.59311 0.41421 2.46320 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 2 2.93568 1.99421 2.70596 0.29574 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 3 3.21971 2.04629 2.99736 0.24731 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 4 0.54301 2.71875 1.28180 2.58350 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.04754 3.61692 3.93395 1.05216 0.42953 1.09861 0.40547 5 1.27889 2.05845 0.80340 1.92279 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.03721 4.00294 4.00294 1.46634 0.26236 1.05229 0.42946 6 1.77377 2.48910 0.43162 2.32411 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 7 1.53570 2.63345 0.46173 2.49287 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 8 2.80193 2.73364 3.32637 0.17626 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.04335 4.00427 3.72194 1.46634 0.26236 1.09861 0.40547 9 2.31536 3.38569 0.20230 2.98445 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.03738 3.99830 3.99830 1.46634 0.26236 0.91950 0.50869 10 2.44866 3.30237 0.17953 3.19091 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 11 3.41494 0.19384 3.20963 2.27339 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 12 0.29294 3.05592 1.88905 2.88893 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 13 1.68226 2.09695 0.57259 2.06238 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 14 0.15026 3.29995 2.91422 3.02864 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 15 2.40863 3.45965 0.18446 3.05620 16 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 16 1.64754 0.74698 2.47288 1.38893 17 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04044 4.00427 3.84441 1.46634 0.26236 1.09861 0.40547 17 1.86288 0.60251 2.62110 1.49335 18 C + - _ 1.38629 1.38629 1.38629 1.38629 0.85023 0.58989 4.00110 0.08214 2.54010 0.99493 0.46164 18 2.57358 3.58066 0.15791 3.17118 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 19 2.90590 3.81029 0.11737 3.38431 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 20 1.81081 1.52889 2.37839 0.64055 23 U + - _ 1.38629 1.38629 1.38629 1.38629 1.00854 0.48287 4.00427 0.05810 2.87446 1.09861 0.40547 21 0.12456 3.44214 3.14676 3.16714 25 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 22 2.22022 1.33431 1.90214 0.73642 26 u = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 23 3.09796 2.07407 2.85522 0.25923 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 24 2.54726 3.36660 0.16866 3.16067 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 25 3.36652 0.22645 3.11357 2.08998 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 26 0.56561 2.45994 1.48154 2.12647 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 27 2.71011 1.76201 2.45760 0.39137 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 28 0.26647 3.02958 2.01484 2.95178 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 29 0.26674 3.02821 2.01454 2.94987 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 30 0.49300 2.77555 1.37311 2.60943 34 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 31 0.70246 2.25114 1.29159 2.08330 35 a = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 32 2.58649 0.31605 3.17723 1.87083 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 33 2.80193 2.73364 3.32637 0.17626 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 34 2.80193 2.73364 3.32637 0.17626 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 35 0.12456 3.44214 3.14676 3.16714 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 36 0.12456 3.44214 3.14676 3.16714 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 37 0.64365 2.54747 1.26803 2.16311 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 38 1.28348 0.86156 2.32403 1.59677 42 c + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 39 2.32738 0.81491 2.05609 1.10317 43 c = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 40 2.82878 1.58304 2.57862 0.41599 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 41 3.17631 2.33276 2.83786 0.21980 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 42 3.17955 2.33322 2.83918 0.21948 46 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 43 0.46923 2.59776 1.53044 2.48128 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 44 1.76177 1.44409 2.33325 0.70255 48 u + - , 1.38629 1.38629 1.38629 1.38629 0.05125 4.00427 3.45080 1.46634 0.26236 1.09861 0.40547 45 0.81110 1.82937 2.09238 1.30297 49 a + - , 1.38629 1.38629 1.38629 1.38629 0.99496 3.99069 0.49139 1.46634 0.26236 1.31889 0.31120 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 47 1.80343 1.30580 1.07713 1.49727 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 48 1.80132 1.30645 1.07792 1.49684 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 49 1.80042 1.30672 1.07825 1.49666 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 50 1.80012 1.30682 1.07837 1.49660 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 51 1.80009 1.30683 1.07837 1.49660 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 52 1.80021 1.30679 1.07833 1.49662 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.62948 0.07485 53 1.22096 1.44207 1.74366 1.22508 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.08862 3.16057 3.16057 1.46634 0.26236 3.26155 0.03908 54 1.34683 1.38142 1.81494 1.12126 58 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09989 3.17374 2.93334 1.46634 0.26236 3.52445 0.02991 55 1.18118 1.54266 1.72440 1.20068 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.16657 3.16230 2.19724 1.46634 0.26236 3.53242 0.02967 56 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 57 1.73140 1.21972 1.16169 1.53855 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 58 1.73124 1.21978 1.16174 1.53850 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 59 1.73116 1.21982 1.16178 1.53848 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 60 1.73119 1.21981 1.16176 1.53849 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 61 1.73145 1.21970 1.16167 1.53856 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 62 1.73211 1.21941 1.16143 1.53876 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.57883 0.02831 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08404 2.51819 64 1.09879 1.32034 1.95061 1.35676 68 a + - , 1.38629 1.38629 1.38629 1.38629 0.94301 0.52423 3.98794 0.07526 2.62424 0.72232 0.66480 65 3.09193 0.15801 3.66661 2.58781 71 C + - , 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 66 0.33107 3.06006 1.71765 2.89187 72 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 67 2.57305 3.38660 0.15966 3.28503 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 68 0.35757 2.92232 1.70285 2.73870 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 69 2.48067 3.31051 0.17545 3.20055 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 70 2.16018 3.06897 0.24149 2.94175 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.03872 4.00427 3.92506 1.46634 0.26236 1.09861 0.40547 71 2.79904 2.73122 3.32338 0.17678 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03721 4.00276 4.00276 1.46634 0.26236 1.04651 0.43257 72 2.80193 2.73364 3.32637 0.17626 78 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 73 3.09193 0.15801 3.66661 2.58781 79 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 74 0.14504 3.32691 2.95558 3.05630 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 75 0.12456 3.44214 3.14676 3.16714 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 76 1.00210 1.37649 2.12831 1.34174 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05324 3.39284 4.00427 0.86959 0.54321 1.09861 0.40547 77 2.39009 2.08632 2.90594 0.31534 84 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 78 3.16083 0.26042 2.88926 2.03055 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 79 3.39685 0.20066 3.13703 2.25459 86 C = - > 1.38629 1.38629 1.38629 1.38629 0.05324 3.39284 4.00427 0.86959 0.54321 1.09861 0.40547 80 2.94874 1.89063 2.72024 0.31367 88 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 81 3.46537 0.18727 3.21115 2.31053 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 82 3.08085 2.04552 2.85053 0.26533 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 83 2.73264 0.55895 2.44505 1.28584 91 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 84 2.61366 0.50430 2.30091 1.50221 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 85 2.15656 0.87903 1.88215 1.14939 93 c = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 86 2.80594 1.46911 2.52545 0.46299 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 87 0.28417 3.17416 1.86660 2.97814 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 88 0.33385 2.85127 1.83233 2.71773 96 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 89 2.71544 0.48371 2.37373 1.49522 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03716 4.00427 4.00427 1.46634 0.26236 1.09861 0.40547 90 0.18395 3.00157 2.88868 2.76992 98 A + - : 1.38629 1.38629 1.38629 1.38629 0.01875 3.98586 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME LeuTAG STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:19 2015 COM [1] cmbuild --hand --enone Leu-TAG_model.cm aligntRNAdb-Leu-TAG.sto COM [2] cmcalibrate --seed 208 Leu-TAG_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3220087553 NULL 0.000 0.000 0.000 0.000 EFP7GF -6.8650 0.71874 ECMLC 0.54132 -9.57742 1.84487 1600000 581403 0.002064 ECMGC 0.31421 -55.09887 -38.66306 1600000 69971 0.005717 ECMLI 0.52098 -9.87138 1.94097 1600000 564724 0.002125 ECMGI 0.30712 -51.22417 -34.67859 1600000 64401 0.006211 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 118 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 38 101 120 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 40 101 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 21 47 99 118 -13.126 -0.001 -12.941 -13.153 -14.045 1.937 -8.690 -2.913 -4.788 D 4 2 3 5 5 12 35 98 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 38 100 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 A U = = MP 6 5 3 10 6 21 47 98 117 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.924 -12.434 -13.590 -7.893 -10.336 -9.854 -1.261 -10.524 -1.378 -7.817 -11.599 -9.723 -8.892 ML 7 5 3 10 6 13 37 97 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 37 97 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 34 94 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 38 98 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 38 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 C G = = MP 12 11 6 16 6 21 45 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 13 11 6 16 6 13 37 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 37 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 34 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 37 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 38 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 U A = = MP 18 17 6 22 6 19 44 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.349 -12.049 -12.181 -11.103 -10.388 -12.065 -9.099 -11.819 -10.390 -11.094 -12.380 -11.838 3.995 -10.493 -5.211 -5.545 ML 19 17 6 22 6 13 36 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 36 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 34 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 37 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 37 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 U A = = MP 24 23 6 28 6 17 42 92 111 -5.855 -14.017 -0.026 -12.794 -13.073 -13.468 -11.108 -11.366 -10.431 -7.608 -8.787 -10.580 -4.501 -9.700 -10.527 -7.587 -10.655 -9.735 3.960 -10.943 -1.426 -9.247 ML 25 23 6 28 6 12 36 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 36 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 34 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 39 91 110 -5.235 -5.497 -0.097 -7.153 -7.929 -7.589 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 37 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 91 U A = = MP 30 29 6 34 6 15 40 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 31 29 6 34 6 12 36 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 36 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 34 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 36 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 37 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 90 U A = = MP 36 35 6 40 6 13 38 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.962 -11.389 -10.427 -7.626 -8.778 -10.571 -1.481 -9.693 -1.831 -7.598 -10.650 -9.790 3.879 -10.943 -1.005 -9.332 ML 37 35 6 40 6 11 36 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 35 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 33 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 36 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 36 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 89 A U = = MP 42 41 6 46 4 11 36 86 105 -13.280 -13.487 -0.015 -6.635 -11.035 -10.928 -5.977 3.992 -11.491 -11.533 -10.188 -5.799 -11.285 -7.467 -11.327 -6.291 -10.337 -11.545 -10.678 -5.147 ML 43 41 6 46 4 10 35 87 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 34 87 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 33 85 105 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 35 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 35 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 9 34 84 103 -14.176 -0.000 -12.830 1.430 -3.065 -2.109 -0.069 D 49 47 6 50 3 8 33 83 102 -9.133 -0.134 -3.525 IL 50 50 3 50 3 10 34 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 8 33 83 102 -14.843 -0.000 1.987 -10.056 -4.849 -9.464 D 52 50 3 53 2 7 32 82 101 -8.445 -0.004 IL 53 53 3 53 2 9 33 84 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 7 32 82 101 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 15 44 62 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 15 44 62 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 3 26 43 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 29 G C = = MP 58 57 1 62 6 2 5 26 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.944 -3.322 -13.996 -2.322 -13.611 -9.822 -7.937 -13.563 -10.002 3.971 -10.202 -6.558 -8.293 -10.281 -10.374 -12.961 ML 59 57 1 62 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 2 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 2 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 G C = = MP 64 63 6 68 6 2 5 24 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.013 -8.636 -14.346 -6.113 -13.638 -9.798 -7.936 -13.797 -2.648 3.982 -10.197 -6.569 -8.302 -10.266 -10.386 -13.442 ML 65 63 6 68 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 2 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 2 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 A U = = MP 70 69 6 74 6 2 5 22 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.606 -10.294 3.944 -12.433 -13.589 -7.891 -10.336 -9.854 -1.275 -10.524 -6.045 -7.817 -11.599 -9.722 -8.892 ML 71 69 6 74 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 2 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 2 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 U A = = MP 76 75 6 80 4 2 4 20 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -0.750 -9.693 -10.530 -7.599 -10.650 -9.793 3.904 -10.943 -3.794 -1.543 ML 77 75 6 80 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 3 17 35 -14.190 -0.000 -12.844 1.794 -8.245 -1.079 -4.150 D 83 81 6 84 3 0 0 19 38 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - + - ML 85 84 3 87 3 1 2 16 34 -14.190 -0.000 -12.844 0.204 -5.100 1.493 -8.013 D 86 84 3 87 3 0 0 18 37 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - a - + - ML 88 87 3 90 3 1 1 15 32 -14.190 -3.818 -0.106 0.727 -0.373 -1.707 0.340 D 89 87 3 90 3 0 0 18 36 -6.174 -1.687 -0.566 IL 90 90 3 90 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 15 32 -1.626 -0.569 -9.030 0.013 -2.158 -0.006 0.824 D 92 90 3 93 3 0 0 14 30 -15.505 -0.002 -9.897 IL 93 93 3 93 3 1 1 15 32 -3.762 -0.128 -6.462 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 14 30 -14.190 -0.000 -12.844 1.978 -9.983 -4.090 -9.427 D 95 93 3 96 3 0 0 16 34 -6.174 -1.687 -0.566 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - G - + - ML 97 96 3 99 3 1 1 13 28 -14.190 -0.048 -4.934 -8.727 -10.497 1.998 -9.485 D 98 96 3 99 3 0 0 15 33 -6.174 -1.687 -0.566 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 12 25 -4.701 -0.057 -12.796 -2.011 -0.241 -7.619 1.536 D 101 99 3 102 3 0 0 12 26 -0.956 -1.133 -5.124 IL 102 102 3 102 3 1 1 13 26 -2.035 -0.412 -7.887 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - a - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.890 -0.982 -4.484 0.675 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.382 -4.075 0.414 -8.616 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = MP 112 111 3 116 6 2 2 26 45 -5.923 -14.017 -0.025 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -2.200 -10.571 -2.834 -9.692 -10.530 -7.600 -10.650 -9.795 3.942 -10.943 -1.965 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -5.177 -5.440 -0.101 -7.095 -7.872 -7.532 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 47 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.888 -10.571 -2.110 -9.692 -10.530 -7.600 -10.650 -9.795 3.940 -10.943 -2.919 -9.332 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 46 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.925 -8.639 -13.912 -2.012 -13.600 -9.829 -7.936 -13.504 -10.001 3.975 -10.204 -6.555 -8.290 -10.285 -10.369 -12.852 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 45 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.689 -8.647 -13.074 -1.429 -13.481 -9.925 -7.934 -12.865 -9.991 3.877 -10.224 -0.123 -8.251 -10.347 -10.314 -11.840 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 44 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.390 -10.426 -7.626 -2.710 -10.571 0.882 -9.692 -10.530 -7.598 -10.650 -9.794 3.624 -1.047 0.229 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.251 1.947 -9.652 -2.809 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.899 -2.674 -4.482 -3.847 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 1 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - ML 166 165 2 168 3 1 1 49 68 -14.190 -1.791 -0.492 1.999 -10.184 -9.419 -9.524 D 167 165 2 168 3 0 0 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - + - ML 169 168 3 171 2 1 1 48 67 -13.046 -0.000 1.996 -8.503 -7.756 -7.881 D 170 168 3 171 2 0 0 47 66 -13.384 -0.000 IL 171 171 3 171 2 1 1 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 28 47 -14.190 -0.040 -5.203 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - A - + - ML 231 230 2 233 3 1 1 28 47 -5.271 -0.038 -12.805 1.927 -9.530 -2.373 -9.175 D 232 230 2 233 3 0 0 27 46 -10.474 -0.051 -4.866 IL 233 233 3 233 3 1 1 28 47 -3.866 -0.119 -6.567 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - A - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.551 -0.947 -3.826 -1.057 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 88 A A = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 3.423 -11.229 -1.185 -7.475 1.069 -10.600 -4.520 -9.704 -3.512 -7.488 -10.647 -9.434 1.364 -10.955 -6.510 -9.320 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 87 U A = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 0.096 -9.692 -10.530 -7.599 -10.650 -9.795 3.880 -10.943 -2.417 -9.332 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 86 U A = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -2.087 -9.693 -10.530 -7.599 -10.650 -9.793 3.950 -10.943 -1.778 -9.332 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 75 85 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 76 84 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 267 266 6 269 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - G - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - C - + - ML 273 272 3 275 3 1 1 13 32 -14.190 -0.000 -12.844 -4.809 1.985 -8.998 -8.103 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 12 30 -14.190 -0.000 -12.844 1.966 -5.247 -3.969 -8.630 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 15 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - C - + - ML 282 281 3 284 3 1 1 9 27 -14.190 -0.000 -12.844 -2.862 1.870 -5.325 -2.448 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 83 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -11.317 -10.026 -12.774 1.999 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME LeuTAG LENG 90 MAXL 181 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:19 2015 COM [1] cmbuild --hand --enone Leu-TAG_model.cm aligntRNAdb-Leu-TAG.sto NSEQ 282 EFFN 2.508636 CKSUM 3220087553 STATS LOCAL MSV -9.2290 0.71874 STATS LOCAL VITERBI -9.8631 0.71874 STATS LOCAL FORWARD -3.6211 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19247 1.58997 1.43197 1.37137 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 0.00000 * 1 0.39521 2.87517 1.58974 2.71690 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 2 3.26928 0.22222 3.05780 2.16946 2 C = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 3 3.06817 1.93378 2.83164 0.28771 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 4 3.03428 1.89569 2.79690 0.30019 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.04978 3.52720 3.95439 1.01715 0.44883 1.09861 0.40547 5 3.05578 1.97013 2.81799 0.28270 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 6 2.47740 1.82976 2.23116 0.43358 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 7 0.31209 2.84914 1.93723 2.71672 8 A = - ( 1.38629 1.38629 1.38629 1.38629 0.04504 3.95439 3.69410 1.46634 0.26236 1.09861 0.40547 8 0.75790 2.00911 1.97490 1.35299 9 a + - , 1.38629 1.38629 1.38629 1.38629 0.03932 3.94867 3.94867 1.46634 0.26236 0.93282 0.49996 9 0.16465 3.20831 2.85341 2.92359 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 10 2.46793 3.26265 0.18067 3.16436 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 11 2.47447 3.10632 0.19558 3.02271 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 12 0.37398 2.86442 1.66767 2.71342 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 13 2.66943 1.67964 2.40844 0.42417 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 14 0.39327 2.59466 1.95317 2.21953 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 15 1.24590 2.54096 0.65740 2.15995 16 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 16 1.08424 1.60571 1.90962 1.16168 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.86522 3.95439 0.58005 1.46634 0.26236 1.09861 0.40547 17 1.16596 1.71781 1.49975 1.25270 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11945 2.64717 3.17634 0.93272 0.50002 0.06624 2.74743 18 0.17828 3.14839 2.76170 2.86149 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 19 2.78154 3.67031 0.13509 3.24553 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.04826 3.95439 3.57772 1.46634 0.26236 1.09861 0.40547 20 1.77577 1.56486 2.40165 0.63307 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.06240 3.19042 3.94558 0.89648 0.52425 0.86385 0.54738 21 1.03925 1.71456 2.09954 1.06792 25 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 22 0.49224 2.57678 1.51924 2.36609 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 23 2.92489 1.89492 2.66649 0.31951 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 24 3.15780 0.23497 2.92815 2.17694 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 25 3.33874 0.21486 3.07625 2.19168 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 26 0.68057 2.35954 1.32676 2.01084 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 27 2.96043 1.82833 2.73095 0.32523 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.04928 3.54342 3.95439 1.03126 0.44092 1.09861 0.40547 28 2.91503 1.77426 2.68874 0.34500 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 29 2.52355 3.27551 0.17283 3.20040 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 30 2.29697 3.09398 0.21934 2.97460 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 31 2.07601 1.33481 1.87341 0.78140 36 u = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 32 2.69628 0.25545 3.27716 2.11824 37 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 33 2.68463 2.63595 3.20496 0.19901 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 34 2.68463 2.63595 3.20496 0.19901 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 35 0.14220 3.31867 3.03502 3.03075 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 36 2.78154 3.67031 0.13509 3.24553 41 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 37 2.78154 3.67031 0.13509 3.24553 42 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 38 0.31977 2.47879 2.46338 2.25674 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 39 0.94790 1.98947 1.13440 1.87038 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 40 3.19280 0.27961 2.91770 1.90509 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 41 3.40665 0.20422 3.10919 2.23559 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 42 0.38778 2.85311 1.63267 2.68282 47 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 43 0.37033 2.89487 1.66759 2.72595 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 44 0.14220 3.31867 3.03502 3.03075 49 A + - , 1.38629 1.38629 1.38629 1.38629 0.60157 3.95439 0.83730 1.46634 0.26236 1.09861 0.40547 45 0.46116 2.29257 2.10715 1.91831 50 A + - , 1.38629 1.38629 1.38629 1.38629 0.42472 3.42045 1.16044 1.46634 0.26236 3.20196 0.04153 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 47 1.80351 1.30578 1.07710 1.49728 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 48 1.80143 1.30641 1.07787 1.49687 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 49 1.80056 1.30668 1.07820 1.49669 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 50 1.80027 1.30677 1.07831 1.49663 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 51 1.80026 1.30678 1.07831 1.49663 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 52 1.80038 1.30674 1.07827 1.49665 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 57 1.73156 1.21965 1.16163 1.53860 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 58 1.73140 1.21972 1.16169 1.53855 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 59 1.73130 1.21976 1.16172 1.53852 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 60 1.73131 1.21975 1.16172 1.53852 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 61 1.73155 1.21966 1.16163 1.53859 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 62 1.73217 1.21939 1.16141 1.53878 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.50146 0.03062 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08888 2.46462 64 0.24902 2.90521 2.39275 2.59937 69 A + - , 1.38629 1.38629 1.38629 1.38629 0.05532 3.37137 3.93854 0.90303 0.51977 0.74133 0.64718 65 0.67639 1.83029 2.13657 1.54588 71 A + - , 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 66 1.25789 1.44475 1.62921 1.25928 72 a = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 67 2.74265 1.46472 2.49280 0.47517 73 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 68 2.95704 1.77709 2.71386 0.33881 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 69 2.63674 3.32093 0.15796 3.25971 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 70 2.63603 3.32005 0.15811 3.25849 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 71 2.68463 2.63595 3.20496 0.19901 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 72 2.78154 3.67031 0.13509 3.24553 78 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 73 2.70594 0.22203 3.32979 2.33822 79 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 74 0.20338 2.99403 2.67390 2.73388 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 75 0.14220 3.31867 3.03502 3.03075 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 76 2.15355 0.41606 2.79572 1.81266 82 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 77 2.68463 2.63595 3.20496 0.19901 83 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 78 3.45584 0.18771 3.15567 2.33335 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 79 3.45681 0.18762 3.15610 2.33354 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 80 0.39541 2.87894 1.58878 2.71472 86 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 81 0.55102 2.65525 1.30417 2.50150 87 A = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 82 1.06098 1.79782 1.30930 1.52228 88 a = - > 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 83 2.98832 2.22689 2.66134 0.25889 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 84 0.48632 2.42690 1.63685 2.28069 90 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 85 0.32043 3.00414 1.80708 2.80596 91 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 86 0.35153 2.96573 1.69381 2.79605 92 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 87 0.33068 3.00685 1.75458 2.82791 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 88 2.45103 3.23177 0.19059 3.04001 94 G = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 89 2.94430 1.90403 2.68647 0.31434 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03910 3.95439 3.95439 1.46634 0.26236 1.09861 0.40547 90 0.23968 2.90636 2.49483 2.57784 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01974 3.93503 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Lys STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:37 2015 COM [1] cmbuild --hand --enone Lys_model.cm aligntRNAdb-Lys.sto COM [2] cmcalibrate --seed 208 Lys_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 259 EFFN 259.000000 CKSUM 36936522 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.5152 0.71872 ECMLC 0.59312 -8.17549 2.33797 1600000 612828 0.001958 ECMGC 0.33505 -43.64491 -28.96153 1600000 54779 0.007302 ECMLI 0.59885 -7.66196 2.61383 1600000 564515 0.002126 ECMGI 0.35433 -38.85465 -25.17350 1600000 50976 0.007847 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 127 -12.953 -14.199 -0.001 -10.652 IL 1 1 2 1 4 14 36 103 129 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 37 103 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - A - + MR 3 2 3 5 5 19 44 102 127 -13.004 -0.001 -12.820 -13.032 -13.923 1.760 -5.138 -0.970 -3.769 D 4 2 3 5 5 11 33 100 126 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 14 36 102 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 C G = = MP 6 5 3 10 6 20 44 101 126 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.987 -11.268 -10.305 -7.505 -8.655 -10.449 3.963 -9.571 -10.408 -7.477 -10.528 -9.670 -5.388 -10.821 -1.499 -9.210 ML 7 5 3 10 6 13 34 99 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 12 34 99 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 31 96 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 13 35 100 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 13 36 100 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 A U = = MP 12 11 6 16 6 20 42 99 124 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.977 -2.217 -10.172 3.872 -12.313 -13.468 -7.771 -1.849 -9.732 -1.278 -10.402 -1.192 -7.696 -11.477 -9.601 -8.770 ML 13 11 6 16 6 12 34 97 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 12 34 97 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 30 94 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 13 35 98 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 13 35 98 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 U A = = MP 18 17 6 22 6 19 41 97 122 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.986 -11.268 -10.304 -7.504 -2.621 -10.449 2.662 -9.570 -10.408 -7.475 -10.528 -9.670 3.154 -10.821 -0.779 -9.209 ML 19 17 6 22 6 12 34 95 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 34 95 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 30 92 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 13 35 96 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 13 35 96 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 U A = = MP 24 23 6 28 6 18 39 95 120 -5.708 -13.898 -0.029 -12.674 -12.954 -13.349 -10.986 -11.267 -10.304 -1.768 -2.164 -10.449 -0.337 -9.570 -10.408 -7.475 -10.528 -9.669 3.838 -10.821 -1.407 -9.209 ML 25 23 6 28 6 12 33 93 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 33 93 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 30 90 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 36 94 119 -5.258 -5.521 -0.095 -7.176 -7.952 -7.612 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 35 94 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 100 A U = = MP 30 29 6 34 6 16 37 93 118 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.978 -3.688 -10.173 3.418 -12.310 -13.394 -7.763 -10.217 -9.731 2.257 -10.399 -1.211 -7.691 -11.463 -9.596 -8.772 ML 31 29 6 34 6 12 33 91 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 33 91 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 30 89 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 34 92 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 34 92 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 99 A U = = MP 36 35 6 40 6 14 35 91 116 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -8.756 -3.041 -3.046 3.288 -1.763 -9.449 0.191 -8.200 -8.584 -4.134 -9.056 -2.413 1.891 -8.918 -0.777 -7.319 ML 37 35 6 40 6 11 32 90 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 32 89 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 29 87 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 33 90 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 33 90 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = MP 42 41 6 46 4 12 33 89 114 -13.158 -13.365 -0.001 -11.779 -11.278 -8.538 -12.228 1.114 -13.197 -9.960 -7.807 -12.132 -9.855 3.775 -10.134 -2.929 -8.074 -10.322 -10.113 -10.915 ML 43 41 6 46 4 10 31 88 114 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 30 88 113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 29 87 112 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 32 90 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 32 89 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - + - ML 48 47 6 50 3 10 31 87 112 -14.068 -0.000 -12.722 1.882 -2.957 -4.406 -2.854 D 49 47 6 50 3 8 29 85 111 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 31 88 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 9 30 86 111 -14.721 -0.000 1.975 -9.733 -9.219 -3.915 D 52 50 3 53 2 8 29 85 110 -8.445 -0.004 IL 53 53 3 53 2 9 30 86 112 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 29 85 110 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 8 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 8 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 24 42 -0.001 -12.077 -11.484 -12.124 [ MATP 15 ] 11 27 G C = = MP 58 57 1 62 6 2 2 24 42 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -11.899 -8.517 -14.255 -5.996 -13.518 -9.677 -7.816 -13.695 -9.886 3.996 -10.077 -6.451 -8.183 -10.145 -10.267 -13.365 ML 59 57 1 62 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 C G = = MP 64 63 6 68 6 2 2 22 40 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.988 -11.268 -10.303 -7.505 -8.653 -10.446 3.979 -9.571 -10.409 -7.477 -10.525 -9.670 -5.389 -10.822 -2.410 -9.211 ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 U A = = MP 70 69 6 74 6 2 2 20 38 -13.958 -13.898 -0.071 -12.674 -5.605 -5.188 -12.407 -12.070 -12.287 -11.616 -10.480 -12.145 -10.946 -11.973 -10.382 -11.621 -12.483 -11.964 3.995 -10.478 -5.717 -5.249 ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 19 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 A U = = MP 76 75 6 80 4 2 2 18 36 -13.085 -13.292 -0.192 -3.009 1.318 1.676 -1.412 3.029 -10.805 -11.605 -3.404 -3.869 -9.373 -1.011 -9.989 -3.275 -2.110 -10.427 -0.646 -2.857 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 18 37 -7.954 -6.983 -4.851 -0.069 -3.847 1.910 -4.558 -2.933 D 79 75 6 80 4 0 0 17 35 -8.321 -8.003 -6.018 -0.033 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 16 34 -13.806 -0.628 -1.502 1.146 -1.578 -3.431 0.443 D 83 81 6 84 3 0 0 13 31 -12.914 -8.427 -0.004 IL 84 84 3 84 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - a - + - ML 85 84 3 87 3 1 1 15 34 -13.178 -2.616 -0.257 0.808 -0.369 -2.021 0.297 D 86 84 3 87 3 0 0 12 31 -14.374 -9.887 -0.002 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 16 34 -10.566 -1.659 -0.551 -0.279 -1.432 -3.409 1.439 D 89 87 3 90 3 0 0 12 30 -15.356 -10.869 -0.001 IL 90 90 3 90 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 16 34 -8.917 -2.021 -0.412 0.516 -1.438 -1.681 0.917 D 92 90 3 93 3 0 0 12 30 -15.448 -3.642 -0.121 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 14 33 -10.506 -0.103 -3.871 1.390 -2.949 -0.918 -0.473 D 95 93 3 96 3 0 0 10 28 -15.362 -5.760 -0.027 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - + - ML 97 96 3 99 3 1 1 12 31 -10.679 -0.404 -2.037 -1.120 -1.836 1.401 -0.691 D 98 96 3 99 3 0 0 8 27 -15.345 -10.858 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 7 14 -0.854 -1.980 -2.371 -3.711 -0.346 -4.496 1.629 D 101 99 3 102 3 0 0 3 9 -15.381 -0.029 -5.656 IL 102 102 3 102 3 1 1 7 13 -4.326 -1.318 -0.865 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.001 -0.116 -1.568 -0.437 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 28 46 -14.068 -0.000 -12.722 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.004 -0.001 -12.820 -13.032 -13.923 1.218 -8.975 0.739 -8.886 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 U A = = MP 112 111 3 116 6 2 2 26 45 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.987 -11.269 -10.305 -7.505 -8.655 -10.449 1.247 -9.570 -1.792 -7.477 -10.528 -9.672 3.717 -10.821 -2.599 -9.210 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 U A = = MP 118 117 6 122 6 2 2 24 43 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -10.987 -11.269 -10.305 -7.505 -8.655 -10.449 -0.566 -9.571 -10.408 -7.477 -10.528 -9.672 3.931 -10.821 -4.232 -9.210 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 A U = = MP 124 123 6 128 6 2 2 22 41 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.994 -2.927 -9.714 3.983 -12.268 -13.370 -7.778 -9.688 -9.753 -5.324 -10.417 -5.932 -7.714 -11.477 -9.602 -8.597 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 A U = = MP 130 129 6 134 6 2 2 20 39 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.977 -8.637 -10.172 3.865 -12.313 -13.468 -7.771 -10.214 -9.732 0.182 -10.402 -1.869 -7.695 -11.477 -9.601 -8.770 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 C G = = MP 136 135 6 140 4 2 2 18 37 -13.158 -13.365 -0.001 -11.779 -10.987 -11.267 -10.305 -7.504 -8.656 -10.449 3.969 -9.571 -10.408 -7.476 -10.528 -9.668 -1.699 -10.822 -6.358 -9.210 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.068 -0.000 -12.722 -10.118 1.999 -10.745 -8.842 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - U - * - ML 154 153 3 156 3 1 1 11 29 -14.068 -0.000 -12.722 -11.172 -9.894 -12.614 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.068 -0.000 -12.722 1.999 -10.068 -9.303 -9.409 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.068 -9.303 -9.409 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 55 81 -14.068 -0.000 -12.722 IL 165 165 2 165 3 1 5 57 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 4 55 81 -14.068 -0.000 -12.722 1.987 -9.869 -9.250 -4.902 D 167 165 2 168 3 0 2 54 79 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 56 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - + - ML 169 168 3 171 2 1 3 54 80 -14.721 -0.000 -1.272 -10.137 1.841 -9.227 D 170 168 3 171 2 0 2 53 79 -8.445 -0.004 IL 171 171 3 171 2 1 3 55 80 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 53 79 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.773 -12.077 -11.484 -0.027 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 34 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -17.944 -16.643 -12.440 -13.122 -13.139 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.367 -13.048 -4.076 -0.089 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - A - + - ML 216 215 6 218 3 1 1 15 33 -10.140 -0.005 -8.794 1.979 -6.040 -5.443 -5.667 D 217 215 6 218 3 0 0 9 28 -15.392 -10.905 -0.001 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - + - ML 219 218 3 221 3 1 1 13 32 -10.140 -0.258 -2.617 -5.141 -4.689 -5.971 1.970 D 220 218 3 221 3 0 0 8 27 -15.392 -10.905 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - + - ML 222 221 3 224 3 1 1 12 30 -9.887 -0.005 -8.541 -4.750 -4.331 -5.566 1.961 D 223 221 3 224 3 0 0 7 25 -15.408 -10.921 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -4.592 -6.179 1.971 -5.327 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 41 66 -14.068 -0.016 -6.545 IL 230 230 2 230 3 1 2 43 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - + - ML 231 230 2 233 3 1 4 41 66 -0.052 -4.835 -12.707 1.889 -8.899 -9.004 -1.779 D 232 230 2 233 3 0 0 40 65 -0.197 -4.635 -3.514 IL 233 233 3 233 3 1 4 40 65 -5.469 -0.033 -11.449 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - + - ML 234 233 3 236 5 1 4 39 64 -13.004 -0.001 -12.820 -13.032 -13.923 -0.346 -1.100 -7.501 1.455 D 235 233 3 236 5 0 0 37 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 39 64 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 70 97 G C = = MP 237 236 3 241 6 2 4 38 63 -13.958 -5.203 -0.040 -12.674 -12.954 -13.349 -11.604 -8.526 -13.056 0.525 -13.377 -9.790 -7.814 -12.827 -9.873 3.861 -10.101 -6.400 -8.137 -10.218 -10.202 -11.838 ML 238 236 3 241 6 1 1 36 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 36 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 37 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 37 62 -4.908 -0.076 -8.419 -6.587 -7.692 0.000 0.000 0.000 0.000 [ MATP 64 ] 71 95 A U = = MP 243 242 6 247 6 2 4 36 61 -13.958 -13.898 -0.001 -12.674 -12.954 -13.349 -9.928 -0.134 -10.104 3.351 -12.165 -13.008 -7.575 -10.176 -9.702 1.696 -10.356 -0.549 -7.541 -1.257 -9.428 -0.925 ML 244 242 6 247 6 1 1 34 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 34 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 35 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 72 94 G C = = MP 249 248 6 253 6 2 4 34 59 -5.924 -5.920 -0.049 -12.674 -12.954 -13.349 -8.962 -1.959 -8.878 1.050 -10.050 -9.204 -5.102 -9.473 -8.930 3.684 -9.219 -2.193 -2.766 -8.652 -1.306 -7.803 ML 250 248 6 253 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 31 57 -5.077 -5.340 -3.258 -0.267 -7.771 -7.432 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 33 58 -4.345 -0.114 -7.856 -6.024 -7.130 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 92 A U = = MP 255 254 6 259 6 2 2 32 57 -13.934 -13.874 -0.172 -12.650 -5.890 -3.391 -9.952 -0.569 -10.147 3.737 -12.289 -13.443 -7.746 -10.190 -1.863 0.618 -10.377 -2.610 -7.671 -11.453 -9.577 -8.746 ML 256 254 6 259 6 1 1 30 56 -9.117 -9.463 -4.178 -0.103 -9.313 -6.843 1.901 -3.786 -3.292 -3.468 MR 257 254 6 259 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 91 G C = = MP 261 260 6 265 4 2 2 30 55 -12.958 -13.165 -0.090 -4.053 -7.755 -0.773 -7.574 0.732 -0.349 -8.169 -1.680 -8.264 -8.012 3.569 -8.258 -1.494 -1.755 -7.428 -3.347 -6.539 ML 262 260 6 265 4 1 1 29 54 -6.267 -6.449 -0.077 -5.179 -3.414 1.879 -4.183 -2.540 MR 263 260 6 265 4 1 1 29 54 -7.682 -6.710 -0.144 -3.638 -3.420 1.880 -4.188 -2.545 D 264 260 6 265 4 0 0 27 53 -10.021 -9.702 -0.413 -2.020 IL 265 265 5 265 4 1 1 31 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 30 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - u - + - ML 267 266 6 269 3 1 1 28 53 -2.984 -0.195 -12.610 -0.777 0.556 -2.927 0.860 D 268 266 6 269 3 0 0 26 52 -11.775 -0.518 -1.731 IL 269 269 3 269 3 1 1 28 54 -1.598 -0.583 -8.992 0.000 0.000 0.000 0.000 [ MATL 69 ] 79 - u - + - ML 270 269 3 272 3 1 1 26 52 -14.036 -0.010 -7.238 0.189 0.071 -1.451 0.529 D 271 269 3 272 3 0 0 25 51 -10.075 -0.253 -2.644 IL 272 272 3 272 3 1 1 28 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 80 - c - + - ML 273 272 3 275 3 1 1 25 51 -14.055 -0.004 -8.710 -0.394 0.991 -3.114 0.183 D 274 272 3 275 3 0 0 24 49 -8.927 -0.636 -1.496 IL 275 275 3 275 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 81 - A - + - ML 276 275 3 278 3 1 1 24 50 -3.707 -0.139 -6.046 1.207 -0.916 -1.327 -0.390 D 277 275 3 278 3 0 0 23 48 -8.219 -0.264 -2.610 IL 278 278 3 278 3 1 1 26 51 -1.260 -0.786 -8.599 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 23 48 -14.047 -0.044 -5.045 1.618 -1.758 -1.460 -1.882 D 280 278 3 281 3 0 0 21 46 -9.565 -0.838 -1.187 IL 281 281 3 281 3 1 1 24 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - A - + - ML 282 281 3 284 3 1 1 22 47 -3.298 -0.401 -2.828 1.330 -0.852 -2.042 -0.535 D 283 281 3 284 3 0 0 14 39 -10.748 -3.466 -0.138 IL 284 284 3 284 3 1 1 24 49 -1.040 -0.966 -9.128 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.286 0.880 -2.061 0.136 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Lys LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:37 2015 COM [1] cmbuild --hand --enone Lys_model.cm aligntRNAdb-Lys.sto NSEQ 259 EFFN 4.801712 CKSUM 36936522 STATS LOCAL MSV -8.7422 0.71872 STATS LOCAL VITERBI -9.6929 0.71872 STATS LOCAL FORWARD -3.6203 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.20816 1.54630 1.53104 1.30229 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 0.00000 * 1 3.91192 0.13466 3.76902 2.49001 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 2 0.14421 3.62088 2.52067 3.60717 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 3 2.76439 0.94056 2.53580 0.76062 3 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 4 2.78843 1.66915 2.73330 0.37823 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.04001 3.62247 4.38173 0.76622 0.62506 1.09861 0.40547 5 0.74121 2.99240 0.88411 2.80988 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 6 1.17236 1.50839 1.72695 1.23349 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 7 2.00405 3.42512 0.22924 3.28269 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 8 0.23572 2.69857 2.81283 2.49298 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 9 0.09171 3.74279 3.53729 3.35661 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 10 3.19476 4.11746 0.07720 4.07265 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 11 4.05716 0.11158 3.91716 2.68261 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 12 4.31974 3.23094 4.18044 0.07055 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.06252 4.38173 3.03450 1.46634 0.26236 1.09861 0.40547 13 1.02337 1.66933 1.58013 1.40122 14 a = - < 1.38629 1.38629 1.38629 1.38629 0.12224 4.34549 2.28180 1.46634 0.26236 1.76589 0.18758 14 0.86178 1.89365 2.17590 1.15975 15 a + - _ 1.38629 1.38629 1.38629 1.38629 0.31871 4.25212 1.35218 1.46634 0.26236 2.54331 0.08187 15 1.05048 1.60564 1.96124 1.17510 16 a + - _ 1.38629 1.38629 1.38629 1.38629 0.76363 3.97183 0.66322 1.46634 0.26236 3.39769 0.03402 16 1.27122 1.64718 1.85910 0.99126 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.23070 3.28595 1.78011 1.46634 0.26236 4.02966 0.01794 17 1.09321 1.70098 1.63631 1.24598 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14956 3.14529 2.34487 1.46634 0.26236 2.38075 0.09704 18 0.91657 1.84645 1.65187 1.38379 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09190 3.27811 2.99358 1.46634 0.26236 3.36058 0.03533 19 1.29961 1.80691 1.17681 1.36672 20 g + - _ 1.38629 1.38629 1.38629 1.38629 0.13165 3.30161 2.44727 1.46634 0.26236 4.02213 0.01808 20 1.45653 1.51410 1.92195 0.91472 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.15384 2.62370 2.65850 0.85817 0.55154 0.05417 2.94267 21 0.91869 1.56171 1.96833 1.38035 23 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04755 4.35868 3.39199 1.46634 0.26236 0.53573 0.88006 22 1.50499 1.52654 1.41417 1.14707 24 u = - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36115 4.36115 1.46634 0.26236 0.56570 0.83925 23 0.08288 4.36333 3.05126 3.93716 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 24 3.02781 4.05067 0.09211 3.80937 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 25 4.15568 0.09689 3.94249 2.85994 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 26 0.64763 2.97578 1.04215 2.61709 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 27 2.73008 1.37587 2.39479 0.52598 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 28 3.59513 1.94600 3.41300 0.22721 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 29 0.10323 4.22099 2.73712 3.98223 31 A = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 30 0.26831 3.67761 1.72970 3.42011 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 31 3.94381 0.12758 3.80121 2.55031 33 C = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 32 3.88494 0.07366 4.40157 3.26481 34 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 33 3.47224 3.30089 4.01265 0.08991 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 34 3.47224 3.30089 4.01265 0.08991 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 35 3.47224 3.30089 4.01265 0.08991 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 36 3.47224 3.30089 4.01265 0.08991 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 37 0.06046 4.13170 3.78188 3.92038 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 38 0.06046 4.13170 3.78188 3.92038 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 39 2.80334 3.95727 0.10993 3.71407 41 G = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 40 3.61661 2.02624 3.46139 0.21083 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 41 4.18364 3.04765 4.01840 0.08414 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 42 0.25953 3.57662 1.80044 3.34123 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 43 0.57946 2.67467 1.24286 2.49728 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 44 0.07630 3.91139 3.64448 3.60031 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 45 2.15413 3.61111 0.20084 3.24590 47 G + - , 1.38629 1.38629 1.38629 1.38629 1.38600 4.38173 0.30460 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 47 1.80313 1.30589 1.07724 1.49721 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 48 1.80084 1.30660 1.07809 1.49675 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 49 1.79984 1.30690 1.07847 1.49655 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 50 1.79946 1.30702 1.07861 1.49647 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 51 1.79938 1.30704 1.07864 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 52 1.79946 1.30702 1.07861 1.49647 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.62482 0.07521 53 0.70122 1.97866 1.80020 1.60695 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.08195 3.23545 3.23545 1.46634 0.26236 4.05280 0.01753 54 1.47228 1.70747 1.89731 0.82257 56 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10864 3.23545 2.75511 1.46634 0.26236 4.05280 0.01753 55 1.42921 1.68686 1.84976 0.87197 57 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08408 3.21090 3.21090 1.46634 0.26236 4.06345 0.01734 56 1.33673 1.94783 0.94898 1.57224 58 g + - _ 1.38629 1.38629 1.38629 1.38629 0.21516 3.21090 1.87556 1.46634 0.26236 4.06345 0.01734 57 1.73069 1.22002 1.16195 1.53834 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 58 1.73058 1.22007 1.16199 1.53831 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 59 1.73055 1.22008 1.16200 1.53830 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 60 1.73066 1.22003 1.16196 1.53833 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 61 1.73103 1.21988 1.16182 1.53844 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 62 1.73186 1.21952 1.16152 1.53868 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.11048 0.01654 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03335 3.41734 64 0.18969 3.13713 3.10962 2.46798 66 A + - , 1.38629 1.38629 1.38629 1.38629 1.28004 0.34324 4.38173 0.05478 2.93165 1.09861 0.40547 65 1.54778 1.83509 2.54678 0.59902 69 U + - , 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 66 2.29285 3.65866 0.16934 3.53947 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 67 1.04889 2.19259 0.94839 1.89257 71 g = - < 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 68 1.68407 2.59659 0.44079 2.33998 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.03795 3.69951 4.38173 0.81855 0.58173 1.09861 0.40547 69 0.50367 2.77216 1.35619 2.58330 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.11329 4.38173 2.35804 1.46634 0.26236 1.09861 0.40547 70 1.65830 2.08661 0.58314 2.06130 75 G = - < 1.38629 1.38629 1.38629 1.38629 0.07119 4.29606 2.89881 1.46634 0.26236 0.42603 1.05870 71 1.56463 1.21346 2.28239 0.93745 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12414 2.26801 4.32564 0.54237 0.87077 0.58959 0.80868 72 1.24172 1.45542 1.95594 1.08951 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03057 4.36560 4.05102 1.46634 0.26236 0.70139 0.68497 73 1.48170 0.99300 2.33069 1.18726 80 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02717 4.37512 4.25329 1.46634 0.26236 0.94589 0.49157 74 0.80866 1.80985 1.93057 1.40324 81 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09632 2.68320 3.75166 0.70991 0.67666 0.93768 0.49681 75 0.50919 2.13884 2.06268 1.87007 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04835 4.37078 3.36502 1.46634 0.26236 0.94128 0.49451 76 0.73311 1.80822 2.08592 1.46338 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.22417 2.44989 2.16704 0.78231 0.61129 1.47179 0.26073 77 1.40703 1.10388 2.11456 1.19448 90 c + - _ 1.38629 1.38629 1.38629 1.38629 0.10904 4.25038 2.41861 1.46634 0.26236 0.29891 1.35335 78 2.18195 0.64932 2.01178 1.46523 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02762 4.29610 4.29610 1.46634 0.26236 0.37312 1.16662 79 2.67376 1.47173 2.56753 0.47039 92 U = - > 1.38629 1.38629 1.38629 1.38629 0.03846 3.68585 4.36942 0.81761 0.58248 0.69863 0.68770 80 2.67859 0.50196 2.32087 1.47924 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 81 2.24630 1.01797 1.99096 0.92554 95 u = - > 1.38629 1.38629 1.38629 1.38629 0.04624 3.42081 4.38173 0.64359 0.74529 1.09861 0.40547 82 3.71905 0.19699 3.47586 2.09061 97 C = - > 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 83 3.49976 0.26596 3.24615 1.80542 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 84 1.41634 1.89260 1.31534 1.08371 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 85 3.04474 1.01327 2.79430 0.63827 100 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 86 0.43139 2.90335 1.51239 2.58796 101 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 87 0.87002 2.71009 0.83243 2.53154 102 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 88 3.83890 2.79479 3.61432 0.11606 103 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 89 2.91439 3.93986 0.10342 3.70633 104 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02533 4.38173 4.38173 1.46634 0.26236 1.09861 0.40547 90 0.32496 2.85658 1.97370 2.51285 105 A + - : 1.38629 1.38629 1.38629 1.38629 0.01274 4.36915 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Met STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:54:47 2015 COM [1] cmbuild --hand --enone Met_model.cm aligntRNAdb-Met.sto COM [2] cmcalibrate --seed 208 Met_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 111020317 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.3105 0.71871 ECMLC 0.54321 -9.72829 1.72420 1600000 603917 0.001987 ECMGC 0.33831 -51.02767 -36.20177 1600000 60311 0.006632 ECMLI 0.52672 -9.90198 1.84753 1600000 584664 0.002052 ECMGI 0.35761 -46.15816 -32.30504 1600000 56701 0.007055 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 16 37 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 39 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 95 - A - + MR 3 2 3 5 5 21 45 98 117 -13.126 -0.020 -6.206 -13.153 -14.045 1.950 -9.756 -2.915 -9.311 D 4 2 3 5 5 13 34 97 116 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 16 37 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 94 A U = = MP 6 5 3 10 6 22 45 97 116 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -10.080 0.418 -10.275 3.869 -12.395 -13.558 -7.857 -10.316 -9.835 -5.402 -10.504 -6.027 -7.791 -11.579 -9.689 -8.873 ML 7 5 3 10 6 16 37 94 113 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 1.882 -3.535 -3.060 -3.196 MR 8 5 3 10 6 14 35 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 32 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 36 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 93 G C = = MP 12 11 6 16 6 21 43 95 114 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -12.000 -8.617 -14.364 -6.097 -13.620 -9.777 -7.916 -13.800 -9.986 3.996 -10.177 -6.551 -8.283 -10.245 -10.367 -13.477 ML 13 11 6 16 6 16 37 92 111 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 -2.742 -4.107 1.889 -3.474 MR 14 11 6 16 6 14 35 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 31 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 36 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 36 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 92 U A = = MP 18 17 6 22 6 21 42 93 112 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -11.086 -11.352 -10.407 -7.589 -8.761 -10.555 -4.473 -9.674 -10.509 -7.566 -10.630 -9.728 3.847 0.415 -2.233 -9.311 ML 19 17 6 22 6 16 37 90 110 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 -2.593 -2.406 -3.364 1.827 MR 20 17 6 22 6 14 35 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 31 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 36 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 36 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 91 A U = = MP 24 23 6 28 6 19 40 91 110 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 -11.026 -10.898 -5.983 3.993 -11.491 -11.537 -10.140 -5.805 -11.269 -7.441 -11.319 -6.288 -10.290 -11.543 -10.663 -5.987 ML 25 23 6 28 6 15 36 89 108 -8.950 -9.297 -4.011 -0.116 -9.146 -6.676 1.882 -3.535 -3.060 -3.196 MR 26 23 6 28 6 13 34 89 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 31 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 35 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 36 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 90 A G = = MP 30 29 6 34 6 17 38 89 108 -14.059 -13.998 -0.001 -12.774 -13.054 -13.449 2.346 -2.094 3.129 0.791 -12.393 -13.557 -7.855 -10.316 -9.835 -5.402 -2.731 -6.027 -7.790 -11.579 -9.688 -8.873 ML 31 29 6 34 6 15 36 88 107 -8.950 -9.297 -0.139 -3.705 -9.146 -6.676 1.882 -3.535 -3.060 -3.196 MR 32 29 6 34 6 13 33 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 31 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 35 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 35 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 89 G C = = MP 36 35 6 40 6 15 36 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 37 35 6 40 6 12 33 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 33 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 30 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 34 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 34 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 88 G C = = MP 42 41 6 46 4 13 34 85 104 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 43 41 6 46 4 11 32 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 31 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 30 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 33 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 33 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 32 83 102 -3.286 -0.156 -12.844 -8.546 -8.236 -4.191 1.978 D 49 47 6 50 3 9 30 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 32 83 102 -5.675 -0.033 -8.375 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - + - ML 51 50 3 53 2 10 31 82 101 -14.843 -0.000 -0.941 1.797 -9.312 -8.279 D 52 50 3 53 2 9 30 81 100 -8.445 -0.004 IL 53 53 3 53 2 10 31 83 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 30 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 27 A U = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -2.224 3.816 -12.426 -13.585 -7.885 -10.336 -9.854 0.735 -10.524 -6.046 -7.814 -11.599 -9.717 -8.892 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 G C = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.915 -8.703 -13.434 -6.149 -12.323 -9.842 0.691 -12.840 -10.027 3.843 -10.220 -6.633 -7.906 -10.302 -9.586 -12.404 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 C G = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.828 -9.692 -10.530 -7.600 -10.650 -9.795 0.733 -10.943 -3.107 -9.332 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 U A = = MP 76 75 6 80 4 2 3 17 36 -13.280 -13.487 -0.001 -11.901 0.714 -10.781 -10.413 -7.048 -8.918 -10.705 -4.628 -9.746 -10.446 -7.159 -10.637 -8.618 3.836 -10.998 -6.617 -9.281 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 15 33 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.190 -1.513 -0.622 1.999 -10.184 -9.419 -9.524 D 86 84 3 87 3 0 0 16 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 14 32 -12.678 -1.105 -0.903 0.013 -1.719 -5.901 1.417 D 89 87 3 90 3 0 0 12 30 -14.989 -10.502 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - + - ML 91 90 3 93 3 1 1 13 31 -11.575 -4.678 -0.058 -1.759 -1.515 -5.139 1.734 D 92 90 3 93 3 0 0 12 30 -15.354 -0.435 -1.942 IL 93 93 3 93 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 12 30 -13.515 -0.000 -12.169 1.804 -7.386 -1.208 -3.865 D 95 93 3 96 3 0 0 10 29 -14.195 -1.849 -0.469 IL 96 96 3 96 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - U - + - ML 97 96 3 99 3 1 1 10 29 -13.736 -2.935 -0.202 -3.599 -0.604 -7.283 1.702 D 98 96 3 99 3 0 0 9 28 -13.728 -9.241 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 8 15 -2.659 -0.251 -9.458 -4.360 -0.632 -5.117 1.713 D 101 99 3 102 3 0 0 6 13 -6.363 -0.019 -9.858 IL 102 102 3 102 3 1 1 7 14 -3.910 -0.115 -6.610 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 28 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 28 46 -3.288 -0.156 -12.941 -13.153 -14.045 1.846 -8.808 -9.124 -1.316 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -6.714 -0.021 -8.393 -10.225 -9.498 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -0.827 -9.693 -10.530 -7.599 -10.650 -9.794 3.941 -10.943 -4.109 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 C G = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.946 -9.692 -10.530 -7.600 -10.650 -9.795 -2.429 -10.943 -1.407 -9.332 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.022 -2.842 -14.402 -6.117 -13.648 -9.795 -7.938 -13.834 -10.005 3.984 -10.196 -6.570 -8.304 -10.264 -10.391 -13.523 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -10.276 1.999 -10.915 -8.979 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 4 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - + - ML 166 165 2 168 3 1 3 49 68 -14.190 -0.000 -12.844 1.986 -10.052 -4.805 -9.462 D 167 165 2 168 3 0 1 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - + - ML 169 168 3 171 2 1 2 48 67 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 170 168 3 171 2 0 1 47 66 -8.445 -0.004 IL 171 171 3 171 2 1 2 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 49 66 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 65 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 64 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 63 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 53 62 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 54 61 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 55 60 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 28 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - A - + - ML 231 230 2 233 3 1 2 28 47 -14.190 -0.000 -12.844 1.987 -10.057 -4.868 -9.464 D 232 230 2 233 3 0 0 30 49 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - U - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -4.920 -3.449 -7.881 1.953 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 87 G C = = MP 237 236 3 241 6 2 2 26 45 -14.078 -6.073 -0.022 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 238 236 3 241 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 25 44 -4.320 -0.116 -7.831 -5.999 -7.105 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 85 U U = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.297 -9.106 -10.327 -5.415 -10.447 -12.097 -6.108 -10.143 -9.999 -5.740 -10.555 -2.731 0.406 -11.401 -8.062 3.854 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 84 U U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.099 -11.341 -10.426 -2.183 -8.786 -2.550 -4.498 -0.770 -10.525 -7.566 -10.649 -9.679 0.127 -0.962 -1.635 3.705 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 83 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.982 -8.637 -14.177 -6.101 -13.619 -9.809 -7.934 -13.685 0.367 3.875 -10.199 -6.564 -8.296 -10.273 -10.378 -13.205 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 82 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.065 -4.503 -11.948 -8.638 -14.016 -6.088 -13.613 -9.821 -7.937 -13.578 -10.002 3.905 -10.202 -0.008 -8.293 -10.280 -10.375 -12.988 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - U - + - ML 267 266 6 269 3 1 1 15 34 -14.126 -0.000 -12.780 -2.266 -3.574 -5.137 1.880 D 268 266 6 269 3 0 0 15 34 -11.142 -0.032 -5.534 IL 269 269 3 269 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.033 -5.487 -4.554 -3.125 -7.827 1.941 D 271 269 3 272 3 0 0 17 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - U - + - ML 273 272 3 275 3 1 1 13 31 -14.158 -0.096 -3.959 -0.388 -0.018 -7.411 1.165 D 274 272 3 275 3 0 0 13 32 -10.204 -2.887 -0.211 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - A - + - ML 276 275 3 278 3 1 1 12 30 -5.911 -0.024 -12.721 1.814 -4.208 -3.734 -1.496 D 277 275 3 278 3 0 0 10 29 -12.029 -7.542 -0.008 IL 278 278 3 278 3 1 1 12 30 -3.306 -0.179 -6.006 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - U - + - ML 279 278 3 281 3 1 1 10 29 -14.067 -0.000 -12.721 -0.447 -0.105 -7.343 1.220 D 280 278 3 281 3 0 0 10 29 -12.029 -7.542 -0.008 IL 281 281 3 281 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - A - + - ML 282 281 3 284 3 1 1 9 27 -14.067 -0.150 -3.345 1.656 -0.729 -7.296 -2.066 D 283 281 3 284 3 0 0 9 28 -12.029 -7.542 -0.008 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 81 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -9.574 1.208 -10.737 0.756 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Met LENG 90 MAXL 180 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:54:47 2015 COM [1] cmbuild --hand --enone Met_model.cm aligntRNAdb-Met.sto NSEQ 282 EFFN 2.654938 CKSUM 111020317 STATS LOCAL MSV -9.5813 0.71871 STATS LOCAL VITERBI -9.8633 0.71871 STATS LOCAL FORWARD -3.5462 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32657 1.31565 1.46726 1.44495 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 0.00000 * 1 0.42557 2.69682 1.61387 2.52492 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 2 2.65155 3.35684 0.15387 3.29058 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 3 2.59059 1.98116 2.36899 0.36595 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 4 0.29251 2.93155 1.94645 2.85571 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 5 1.07073 1.62332 1.53836 1.40540 5 a = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 6 2.67651 3.38344 0.14953 3.32008 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 7 2.67671 3.38369 0.14949 3.32042 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 8 2.35256 2.38322 2.77034 0.28771 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.10317 2.53779 3.96424 0.42616 1.05846 1.09861 0.40547 9 1.82513 0.47127 2.75073 1.89240 10 C + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 10 0.58827 2.44990 1.34299 2.32944 11 A = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 11 2.23984 2.22932 0.35097 2.50206 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 12 2.86456 0.42439 2.62751 1.52987 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 13 2.07287 1.73318 2.08358 0.55692 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 14 0.13237 3.38532 3.09529 3.10437 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 15 0.13237 3.38532 3.09529 3.10437 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.54244 3.96424 0.91706 1.46634 0.26236 1.09861 0.40547 16 1.30831 1.70534 1.99975 0.88517 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.27270 3.48506 1.57009 1.46634 0.26236 3.13792 0.04434 17 1.41325 1.63383 1.92021 0.87974 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.29407 3.28981 1.52547 1.46634 0.26236 0.35926 1.19798 18 0.46812 2.39115 1.91497 2.00284 19 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04984 3.71693 3.71693 1.46634 0.26236 1.24161 0.34097 19 1.87653 1.66829 2.42007 0.56318 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.66731 3.79187 0.76710 1.46634 0.26236 2.13625 0.12567 20 1.41319 1.54577 1.86808 0.94400 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10346 2.83994 3.22244 1.05649 0.42721 0.06761 2.72756 21 0.13237 3.38532 3.09529 3.10437 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 22 0.57949 2.25872 1.55870 2.08006 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 23 1.75028 2.78719 0.36847 2.61879 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 24 2.73880 0.39821 2.09668 1.95921 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 25 2.54720 1.51973 2.21288 0.52165 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 26 0.34095 2.58460 2.54926 1.99995 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.10317 2.53779 3.96424 0.42616 1.05846 1.09861 0.40547 27 2.91643 1.66897 2.68037 0.37267 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 28 3.14761 0.27763 2.93165 1.92305 31 C = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 29 2.55864 3.34871 0.16409 3.24948 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 30 2.67926 3.38690 0.14897 3.32484 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 31 2.67898 3.38655 0.14903 3.32435 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 32 3.02333 0.16900 3.59906 2.53200 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 33 3.02333 0.16900 3.59906 2.53200 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 34 3.02333 0.16900 3.59906 2.53200 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 35 0.13237 3.38532 3.09529 3.10437 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 36 2.74779 2.68851 3.27039 0.18638 39 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 37 0.13237 3.38532 3.09529 3.10437 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 38 3.02333 0.16900 3.59906 2.53200 41 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 39 3.52069 0.17708 3.22481 2.37576 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 40 3.52306 0.17689 3.22589 2.37621 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 41 3.45467 0.19112 3.18437 2.29299 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 42 2.25717 3.09475 0.22836 2.91456 45 G = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 43 0.42507 2.85463 1.51265 2.68277 46 A = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 44 0.15509 3.26562 2.89832 2.98831 47 A + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 45 0.13237 3.38532 3.09529 3.10437 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.96851 3.96424 0.50855 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 47 1.80347 1.30579 1.07712 1.49728 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 48 1.80137 1.30643 1.07790 1.49685 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 49 1.80048 1.30671 1.07823 1.49668 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 50 1.80018 1.30680 1.07834 1.49662 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 51 1.80017 1.30680 1.07835 1.49661 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 52 1.80028 1.30677 1.07830 1.49664 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 53 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 54 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 55 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 56 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 57 1.73147 1.21969 1.16166 1.53857 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 58 1.73131 1.21975 1.16172 1.53852 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 59 1.73122 1.21979 1.16175 1.53850 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 60 1.73124 1.21978 1.16174 1.53850 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 61 1.73149 1.21968 1.16165 1.53858 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 62 1.73214 1.21940 1.16142 1.53877 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.51691 0.03014 63 1.73350 1.21882 1.16092 1.53917 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.06122 2.82376 64 0.15420 3.26999 2.90502 2.99280 67 A + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 65 2.38841 2.32612 2.92883 0.27827 68 U + - , 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 66 2.68526 3.39447 0.14777 3.33526 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 67 2.28836 1.89783 1.98859 0.49137 70 U = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 68 1.69883 1.52559 1.57930 0.93270 71 u = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 69 2.31317 2.85199 0.24945 2.74743 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 70 2.46970 3.23713 0.18388 3.12180 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.06575 3.96424 3.10885 1.46634 0.26236 1.09861 0.40547 71 1.98574 2.14097 2.57950 0.40142 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93824 3.93824 1.46634 0.26236 0.61531 0.77755 72 2.33074 2.26896 2.87661 0.29702 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05230 3.96424 3.44277 1.46634 0.26236 1.09861 0.40547 73 1.45222 1.47495 2.24915 0.84009 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07875 3.95116 2.87360 1.46634 0.26236 1.22285 0.34869 74 0.42701 2.36066 2.29172 1.88327 77 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05050 3.53003 3.91488 1.05439 0.42833 1.71151 0.19917 75 1.46462 1.50322 2.24016 0.82103 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.04070 3.91488 3.91488 1.46634 0.26236 1.71151 0.19917 76 0.57931 1.84820 2.25756 1.72828 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.10031 3.91488 2.58365 1.46634 0.26236 1.71151 0.19917 77 1.94508 0.92049 2.49869 0.97682 81 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04315 3.85772 3.85772 1.46634 0.26236 0.27483 1.42588 78 3.33033 0.24124 3.06393 2.02601 82 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 79 2.61264 0.31945 2.67340 2.03183 83 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 80 1.55834 1.70315 1.34725 1.05713 84 u = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 81 1.92833 2.26494 1.72572 0.55734 85 U = - > 1.38629 1.38629 1.38629 1.38629 0.04794 3.58189 3.96424 1.05663 0.42714 1.09861 0.40547 82 3.53062 0.17631 3.22932 2.37763 87 C = - > 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 83 3.51395 0.17761 3.22174 2.37449 88 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03870 3.96424 3.96424 1.46634 0.26236 1.09861 0.40547 84 3.51522 0.17751 3.22232 2.37473 89 C = - ) 1.38629 1.38629 1.38629 1.38629 0.04693 3.96424 3.61689 1.46634 0.26236 1.09861 0.40547 85 1.40380 1.69948 1.11383 1.41361 90 g = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 86 3.08202 2.25630 2.74305 0.24204 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 87 0.43363 2.36360 1.79459 2.39066 92 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 88 3.51244 0.17900 3.21145 2.36685 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 1.22827 0.34644 89 2.76601 1.67439 2.51291 0.40252 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03902 3.95633 3.95633 1.46634 0.26236 0.88092 0.53512 90 0.20524 3.05991 2.57595 2.77139 95 A + - : 1.38629 1.38629 1.38629 1.38629 0.01954 3.94508 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Phe STATES 289 NODES 76 CLEN 90 W 104 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:55:02 2015 COM [1] cmbuild --hand --enone Phe_model.cm aligntRNAdb-Phe.sto COM [2] cmcalibrate --seed 208 Phe_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1384 EFFN 1384.000000 CKSUM 788920421 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7273 0.71867 ECMLC 0.65995 -6.40172 2.69942 1600000 487174 0.002463 ECMGC 0.28836 -33.71144 -17.73136 1600000 40116 0.009971 ECMLI 0.62665 -5.89712 3.47035 1600000 425164 0.002822 ECMGI 0.30550 -29.53656 -14.56125 1600000 38811 0.010306 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 104 136 -15.362 -16.608 -0.005 -8.327 IL 1 1 2 1 4 16 34 105 137 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 35 106 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 128 - A - + MR 3 2 3 5 5 23 42 104 136 -15.407 -0.140 -15.222 -3.438 -16.326 1.877 -3.196 -2.339 -5.685 D 4 2 3 5 5 13 32 101 133 -7.884 -2.024 -5.510 -6.941 -0.474 IR 5 5 3 5 5 17 36 104 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 127 G C = = MP 6 5 3 10 6 24 43 103 136 -16.201 -16.140 -0.000 -14.917 -15.197 -15.592 -10.169 -5.140 -9.987 1.157 -11.118 -10.583 -1.370 -10.678 -6.713 3.611 -10.672 -2.278 -0.250 -7.340 -4.224 -5.682 ML 7 5 3 10 6 16 35 101 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 39 101 133 -14.316 -13.045 -2.753 -13.023 -0.233 -11.236 -8.820 1.997 -9.357 -7.705 D 9 5 3 10 6 13 31 97 130 -11.923 -10.622 -6.419 -7.101 -7.118 -0.040 IL 10 10 5 10 6 17 35 103 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 36 102 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 126 U A = = MP 12 11 6 16 6 22 41 101 134 -16.222 -16.162 -0.001 -14.938 -15.218 -11.356 -10.552 -10.254 -10.549 -1.226 -2.436 -11.387 2.213 -10.065 -4.528 -1.526 -10.919 -4.937 3.267 -10.733 -0.520 -9.127 ML 13 11 6 16 6 16 34 99 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 38 99 132 -14.087 -12.816 -8.725 -12.795 -0.005 -11.008 1.997 -8.905 -8.148 -8.267 D 15 11 6 16 6 13 31 97 129 -11.923 -10.622 -6.419 -7.101 -7.118 -0.040 IL 16 16 5 16 6 17 35 101 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 36 100 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 125 U A = = MP 18 17 6 22 6 21 39 99 132 -16.222 -6.621 -0.015 -14.938 -15.217 -15.612 -2.257 -5.397 -2.444 -1.455 -2.584 -4.228 1.444 -6.271 -3.996 -1.640 -5.582 -4.622 3.241 -3.156 0.884 -1.303 ML 19 17 6 22 6 15 33 97 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 37 98 131 -14.087 -12.816 -0.007 -12.795 -7.928 -11.008 -7.407 -9.180 1.996 -8.168 D 21 17 6 22 6 13 31 97 129 -12.081 -10.780 -0.350 -7.259 -7.276 -2.310 IL 22 22 5 22 6 15 34 99 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 36 98 131 -5.637 -0.045 -9.149 -7.316 -8.422 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 123 a a = = MP 24 23 6 28 6 19 37 97 130 -5.837 -6.567 -0.047 -8.171 -10.466 -15.734 2.017 -1.222 -1.298 0.981 -1.187 -4.517 1.453 -4.280 -1.725 -1.285 -3.487 -4.261 1.701 -3.586 0.738 -6.203 ML 25 23 6 28 6 14 33 95 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 32 95 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 29 92 124 -9.935 -8.633 -4.430 -5.113 -5.130 -0.164 IL 28 28 5 28 6 18 36 96 128 -7.327 -7.590 -0.022 -9.245 -10.021 -9.681 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 35 96 128 -5.795 -0.041 -9.306 -7.474 -8.580 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 121 a u = = MP 30 29 6 34 6 18 35 95 127 -16.337 -16.276 -0.000 -15.053 -15.333 -15.728 -0.973 -1.821 -3.817 2.479 -2.340 -3.834 1.336 -3.417 -3.862 0.805 -2.991 -1.458 1.959 -2.923 -2.091 -3.127 ML 31 29 6 34 6 15 32 92 125 -9.231 -9.577 -4.292 -0.095 -9.427 -6.957 1.912 -3.955 -3.450 -3.649 MR 32 29 6 34 6 13 30 92 125 -8.118 -6.847 -2.756 -6.825 -1.959 -0.802 -0.778 1.211 -1.546 -0.396 D 33 29 6 34 6 11 29 90 123 -9.935 -8.633 -4.430 -5.113 -5.130 -0.164 IL 34 34 5 34 6 15 33 95 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 33 94 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 120 u a = = MP 36 35 6 40 6 16 33 93 125 -6.328 -16.276 -0.018 -15.053 -15.333 -15.728 -4.504 -6.497 -4.573 1.100 -2.248 -8.788 1.945 -8.258 -6.834 -0.509 -7.314 -1.116 2.868 -4.254 0.161 -4.518 ML 37 35 6 40 6 14 31 91 124 -9.231 -9.577 -4.292 -0.095 -9.427 -6.957 -3.598 1.893 -4.344 -2.704 MR 38 35 6 40 6 13 31 91 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 29 90 122 -10.893 -9.591 -1.943 -6.071 -6.088 -0.497 IL 40 40 5 40 6 15 32 92 124 -6.852 -7.115 -0.031 -8.770 -9.546 -9.206 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 32 92 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 119 G C = = MP 42 41 6 46 4 14 31 91 123 -15.562 -6.773 -0.013 -14.183 -10.306 -6.268 -10.124 1.567 -11.255 -10.719 -2.208 -10.814 -2.230 3.534 -5.429 -1.312 -1.125 -9.978 -5.363 -3.386 ML 43 41 6 46 4 13 30 90 122 -6.376 -6.558 -0.071 -5.288 -3.003 -2.757 -3.783 1.870 MR 44 41 6 46 4 11 29 90 122 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 29 89 121 -5.963 -5.644 -0.517 -1.914 IL 46 46 5 46 4 13 31 91 124 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 30 90 123 -4.565 -0.072 -7.265 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 12 29 89 121 -16.478 -0.000 -15.132 -3.177 -5.994 -10.367 1.953 D 49 47 6 50 3 10 28 88 120 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 30 90 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 11 28 88 120 -6.769 -0.013 1.938 -5.677 -3.082 -5.043 D 52 50 3 53 2 10 27 87 119 -8.445 -0.004 IL 53 53 3 53 2 11 28 88 120 -5.687 -0.028 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 27 87 119 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 17 51 77 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 17 51 77 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 32 52 -0.000 -14.472 -13.879 -14.519 [ MATP 15 ] 13 35 G C = = MP 58 57 1 62 6 2 3 32 52 -16.344 -16.283 -0.000 -15.059 -15.339 -15.734 -3.627 -2.761 -10.130 -1.100 -11.260 -6.042 -1.737 -10.820 -10.568 3.755 -10.814 0.251 -2.107 -9.984 -5.122 -4.801 ML 59 57 1 62 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 34 C G = = MP 64 63 6 68 6 2 3 30 50 -16.344 -16.283 -0.000 -15.059 -15.339 -15.734 -13.357 -13.613 -12.692 -2.983 -11.052 -12.848 3.863 -3.627 -12.790 -2.415 -12.919 -11.961 -0.380 -1.978 -5.249 -11.590 ML 65 63 6 68 6 1 1 29 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 26 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 33 U A = = MP 70 69 6 74 6 2 3 28 48 -16.344 -16.283 -0.000 -15.059 -15.339 -15.734 -13.397 -13.679 -12.715 -2.156 -5.080 -12.859 -2.362 -11.980 -12.818 -9.887 -12.938 -12.083 3.936 -13.231 -2.049 -11.620 ML 71 69 6 74 6 1 1 27 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 28 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 27 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 32 U A = = MP 76 75 6 80 4 2 3 26 46 -15.568 -15.775 -0.001 -10.254 -3.741 -13.678 -12.714 -2.438 -5.742 -12.859 -0.570 -11.980 -12.818 -9.885 -12.938 -12.080 3.706 -13.231 0.983 -5.645 ML 77 75 6 80 4 1 1 27 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - + - ML 82 81 6 84 3 1 2 24 44 -16.477 -0.002 -9.255 1.953 -12.174 -2.961 -11.657 D 83 81 6 84 3 0 0 22 41 -8.017 -3.530 -0.137 IL 84 84 3 84 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - + - ML 85 84 3 87 3 1 1 23 43 -16.474 -0.499 -1.775 1.229 -0.222 -3.799 -0.459 D 86 84 3 87 3 0 0 21 41 -9.347 -4.860 -0.053 IL 87 87 3 87 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - u - + - ML 88 87 3 90 3 1 1 22 42 -15.976 -1.111 -0.897 0.125 0.011 -4.375 0.890 D 89 87 3 90 3 0 0 21 40 -16.131 -11.645 -0.000 IL 90 90 3 90 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - + - ML 91 90 3 93 3 1 1 22 41 -2.128 -1.732 -1.088 -1.163 0.084 -4.999 1.300 D 92 90 3 93 3 0 0 21 40 -17.326 -0.063 -4.548 IL 93 93 3 93 3 1 1 22 42 -2.999 -0.224 -5.757 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - + - ML 94 93 3 96 3 1 1 21 40 -16.185 -0.004 -8.448 1.163 -1.023 -0.340 -1.062 D 95 93 3 96 3 0 0 18 38 -15.455 -2.332 -0.319 IL 96 96 3 96 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - u - + - ML 97 96 3 99 3 1 1 20 39 -16.244 -0.474 -1.836 0.043 -0.124 -0.048 0.117 D 98 96 3 99 3 0 0 16 36 -15.159 -7.049 -0.011 IL 99 99 3 99 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - + - ML 100 99 3 102 3 1 1 19 39 -1.219 -0.810 -14.426 -1.990 -0.374 -3.005 1.512 D 101 99 3 102 3 0 0 16 36 -3.614 -0.124 -10.919 IL 102 102 3 102 3 1 1 19 39 -1.341 -0.724 -12.838 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.966 -5.543 -5.667 -4.297 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 3 35 61 -16.478 -0.000 -15.132 IL 108 108 2 108 3 1 1 37 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - A - + - ML 109 108 2 111 5 1 3 35 61 -6.920 -0.012 -15.226 -15.439 -16.330 1.603 -5.742 -0.345 -2.675 D 110 108 2 111 5 0 0 35 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 35 61 -5.473 -0.051 -7.152 -8.985 -8.258 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 56 U A = = MP 112 111 3 116 6 2 4 33 60 -16.344 -16.283 -0.047 -15.059 -4.956 -15.734 -3.164 -8.511 -6.201 1.534 -0.662 -9.386 -0.153 -5.450 -2.294 -1.703 -9.142 -4.262 3.322 -3.076 -0.653 -3.323 ML 113 111 3 116 6 1 1 32 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 37 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 55 a u = = MP 118 117 6 122 6 2 4 24 50 -16.296 -16.236 -0.000 -15.012 -15.292 -15.687 -10.264 -2.514 -10.083 2.672 -11.210 -10.679 0.004 -10.772 -10.521 2.543 -10.767 0.253 0.280 -5.699 -3.307 -3.513 ML 119 117 6 122 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 36 63 -12.822 -11.551 -7.460 -11.529 -0.011 -9.743 -7.029 1.990 -7.489 -6.087 D 121 117 6 122 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 40 54 a u = = MP 124 123 6 128 6 2 3 22 47 -16.296 -16.236 -0.018 -15.012 -6.355 -15.687 -10.292 -0.631 -10.112 2.932 -11.246 -10.714 -3.082 -10.799 -10.545 2.798 -10.794 -2.362 -1.325 -9.971 -5.241 -5.581 ML 125 123 6 128 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 35 62 -12.822 -0.025 -7.460 -11.529 -6.663 -9.743 -7.029 1.990 -7.489 -6.087 D 127 123 6 128 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 34 61 -1.015 -0.990 -11.798 -9.965 -11.071 0.000 0.000 0.000 0.000 [ MATP 33 ] 41 51 C G = = MP 130 129 6 134 6 2 3 19 37 -16.327 -16.266 -0.000 -15.042 -15.322 -15.717 -12.878 -12.931 -12.396 -1.486 -4.072 -12.685 3.733 -11.721 -12.435 0.268 -12.655 -10.905 -0.216 -12.823 -2.201 -11.213 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 21 39 -11.418 -10.147 -6.055 -10.125 -0.030 -8.338 1.981 -6.165 -5.560 -5.777 D 133 129 6 134 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 50 A U = = MP 136 135 6 140 4 2 2 17 35 -15.551 -15.758 -0.000 -14.172 -6.730 -3.234 -7.234 3.692 -11.100 -11.226 -1.476 -2.450 -10.799 -0.107 -11.129 -1.467 -1.310 -10.474 -1.124 -1.991 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 20 38 -9.435 -8.464 -6.331 -0.024 1.981 -6.165 -5.560 -5.777 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - C - + - ML 142 141 6 144 3 1 2 14 32 -16.461 -0.000 -15.115 -6.064 1.586 -3.658 -0.145 D 143 141 6 144 3 0 0 15 33 -11.533 -7.046 -0.011 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.461 -0.000 -15.115 -4.139 -11.679 -13.374 1.979 D 146 144 3 147 3 0 0 14 32 -11.533 -0.024 -5.924 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.478 -0.000 -15.132 -5.211 -2.956 1.943 -11.669 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.478 -0.000 -15.132 1.935 -2.962 -4.387 -10.652 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - A - * - ML 154 153 3 156 3 1 1 9 27 -16.478 -0.000 -15.132 1.935 -12.060 -2.510 -11.611 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.478 -0.000 -15.132 0.705 -11.492 1.244 -11.356 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.776 -1.253 -4.662 -3.098 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 1 53 85 -16.478 -0.000 -15.132 IL 165 165 2 165 3 1 1 55 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 57 - A - + - ML 166 165 2 168 3 1 1 53 85 -16.478 -0.163 -3.226 1.690 -2.116 -1.274 -2.942 D 167 165 2 168 3 0 0 52 84 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 54 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - G - + - ML 169 168 3 171 2 1 1 52 85 -16.970 -0.000 -0.518 -3.813 1.642 -3.185 D 170 168 3 171 2 0 0 51 84 -12.954 -0.000 IL 171 171 3 171 2 1 1 53 85 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 51 84 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 45 -3.612 -14.472 -13.879 -0.123 [ MATP 48 ] 59 77 G C = = MP 174 173 1 178 6 2 2 29 48 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -10.680 -7.322 -12.929 -4.792 -12.299 -8.489 -6.615 -12.412 -8.689 3.991 -8.883 -5.252 -6.981 -8.954 -9.060 -11.985 ML 175 173 1 178 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 18 36 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 178 178 5 178 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 60 76 A C = = MP 180 179 6 184 6 2 2 27 46 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -8.804 3.980 -8.944 -3.822 -10.035 -11.511 -5.629 -8.903 -8.542 -4.164 -9.173 -4.810 -6.014 -10.164 -7.540 -7.565 ML 181 179 6 184 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 16 35 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 184 184 5 184 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 61 75 U A = = MP 186 185 6 190 6 2 2 25 44 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -12.282 -11.970 -12.115 -10.862 -10.333 -12.010 -8.997 -11.754 -10.335 -10.888 -12.314 -11.633 3.996 -10.442 -5.687 -5.496 ML 187 185 6 190 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 14 33 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 190 190 5 190 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 62 74 G C = = MP 192 191 6 196 6 2 2 23 42 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -10.680 -7.322 -12.929 -4.792 -12.299 -8.489 -6.615 -12.412 -8.689 3.991 -8.883 -5.252 -6.981 -8.954 -9.060 -11.985 ML 193 191 6 196 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 196 196 5 196 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 63 73 G C = = MP 198 197 6 202 6 2 2 21 40 -12.760 -12.699 -4.018 -11.476 -11.756 -0.093 -10.680 -7.322 -12.929 -4.792 -12.299 -8.489 -6.615 -12.412 -8.689 3.991 -8.883 -5.252 -6.981 -8.954 -9.060 -11.985 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 64 72 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -20.360 -19.058 -14.855 -15.537 -15.555 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 65 71 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.782 -15.463 -4.019 -0.092 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - A - + - ML 216 215 6 218 3 1 1 13 31 -12.486 -0.001 -11.141 1.646 -7.203 -0.223 -7.117 D 217 215 6 218 3 0 0 8 26 -17.803 -7.847 -0.006 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - a - + - ML 219 218 3 221 3 1 1 11 29 -12.575 -0.001 -11.229 0.686 -0.086 -4.946 0.502 D 220 218 3 221 3 0 0 6 25 -17.797 -13.310 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - A - + - ML 222 221 3 224 3 1 1 7 12 -2.212 -0.986 -1.840 1.275 -5.542 -0.193 -0.548 D 223 221 3 224 3 0 0 3 8 -17.797 -13.310 -0.000 IL 224 224 3 224 3 1 1 6 11 -5.168 -0.047 -7.868 0.000 0.000 0.000 0.000 [ MATL 58 ] 70 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.151 -4.926 0.166 -0.680 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 42 74 -16.478 -0.129 -3.551 IL 230 230 2 230 3 1 1 44 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 78 - A - + - ML 231 230 2 233 3 1 1 42 75 -3.215 -0.178 -6.853 1.608 -10.806 -0.241 -3.258 D 232 230 2 233 3 0 0 41 73 -14.350 -0.072 -4.354 IL 233 233 3 233 3 1 1 42 75 -3.188 -0.169 -10.706 0.000 0.000 0.000 0.000 [ MATL 62 ] 81 - U - + - ML 234 233 3 236 5 1 1 41 73 -15.394 -0.002 -9.515 -15.421 -16.313 -0.956 0.028 -2.814 1.216 D 235 233 3 236 5 0 0 34 67 -9.519 -5.362 -8.780 -2.536 -0.323 IL 236 236 3 236 5 1 1 41 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 82 117 G C = = MP 237 236 3 241 6 2 2 40 72 -16.325 -4.669 -0.191 -3.622 -8.228 -11.195 -13.801 -6.401 -14.954 1.533 -15.651 -12.239 -10.176 -14.810 -12.232 3.640 -12.485 -0.795 -10.471 -4.323 -12.522 -13.676 ML 238 236 3 241 6 1 1 39 72 -8.116 -8.462 -3.177 -0.214 -8.312 -5.842 1.703 -2.300 -1.939 -1.835 MR 239 236 3 241 6 1 1 35 68 -9.176 -7.905 -3.814 -7.883 -1.948 -0.600 -0.973 0.430 -1.772 0.888 D 240 236 3 241 6 0 0 32 65 -13.748 -12.446 -8.243 -8.925 -8.943 -0.011 IL 241 241 5 241 6 1 1 39 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 38 71 -2.440 -1.204 -11.369 -2.251 -2.545 0.000 0.000 0.000 0.000 [ MATP 64 ] 83 114 G C = = MP 243 242 6 247 6 2 2 38 70 -16.167 -16.106 -0.047 -5.133 -9.270 -8.819 -10.135 -0.899 -9.953 2.350 -11.084 -1.349 -2.219 -10.643 -10.392 3.026 -10.638 -0.315 -0.694 -5.311 -4.548 -3.083 ML 244 242 6 247 6 1 1 38 72 -13.610 -13.956 -8.670 -0.050 -13.806 -4.987 -2.837 1.936 -5.515 -6.497 MR 245 242 6 247 6 1 1 35 68 -11.631 -10.360 -4.730 -10.339 -0.183 -3.653 1.570 -1.193 -3.404 -1.005 D 246 242 6 247 6 0 0 31 65 -14.763 -13.462 -9.259 -5.175 -9.958 -0.045 IL 247 247 5 247 6 1 1 37 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 37 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 84 113 g c = = MP 249 248 6 253 6 2 2 35 68 -4.683 -3.292 -0.483 -8.146 -7.727 -2.888 -9.773 -2.146 -9.677 1.951 -6.890 -6.150 0.363 -6.293 -10.022 2.757 -7.664 -1.449 1.614 -3.301 -2.006 -4.639 ML 250 248 6 253 6 1 1 37 71 -13.969 -14.315 -7.132 -0.052 -14.165 -5.163 1.672 -1.001 -6.454 -1.723 MR 251 248 6 253 6 1 1 34 67 -11.626 -10.355 -6.264 -10.334 -0.352 -2.309 0.803 -2.132 0.944 -3.281 D 252 248 6 253 6 0 0 30 63 -15.080 -13.778 -9.575 -5.919 -10.275 -0.027 IL 253 253 5 253 6 1 1 36 70 -8.233 -8.496 -1.963 -0.912 -2.446 -5.484 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 35 67 -1.768 -1.369 -12.731 -1.649 -12.004 0.000 0.000 0.000 0.000 [ MATP 66 ] 86 110 c g = = MP 255 254 6 259 6 2 2 33 65 -15.765 -15.704 -0.708 -4.972 -5.409 -1.589 -7.715 -2.831 -7.893 1.556 -1.243 -3.203 2.428 -3.231 -4.440 1.221 -8.504 -4.811 2.032 -4.147 -1.688 -5.907 ML 256 254 6 259 6 1 1 36 70 -14.197 -14.543 -6.942 -0.201 -14.393 -3.040 -0.719 1.637 -2.727 -2.938 MR 257 254 6 259 6 1 1 33 66 -13.731 -2.749 -5.602 -3.302 -0.477 -6.542 1.272 -2.785 -0.902 -0.143 D 258 254 6 259 6 0 0 28 59 -17.604 -16.303 -12.100 -12.782 -12.799 -0.001 IL 259 259 5 259 6 1 1 33 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 32 63 -5.611 -0.046 -9.122 -7.290 -8.396 0.000 0.000 0.000 0.000 [ MATP 67 ] 87 108 c a = = MP 261 260 6 265 4 2 2 31 61 -14.312 -14.519 -0.293 -2.443 -4.039 -1.367 -6.486 1.082 2.324 -1.479 1.435 -3.518 -5.642 1.816 -5.735 -1.703 0.049 -2.828 -2.484 -4.525 ML 262 260 6 265 4 1 1 35 69 -2.279 -11.597 -0.431 -4.273 -0.802 1.665 -3.729 -2.468 MR 263 260 6 265 4 1 1 31 62 -11.723 -1.889 -1.514 -1.398 1.339 0.315 -2.523 -4.241 D 264 260 6 265 4 0 0 28 59 -14.414 -14.095 -1.371 -0.705 IL 265 265 5 265 4 1 1 37 71 -0.795 -9.215 -1.246 -11.701 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 31 62 -1.246 -1.218 -2.750 0.000 0.000 0.000 0.000 [ MATL 68 ] 91 - u - + - ML 267 266 6 269 3 1 1 29 60 -5.372 -0.035 -14.515 0.086 -0.080 -3.181 0.912 D 268 266 6 269 3 0 0 28 58 -7.155 -0.469 -1.885 IL 269 269 3 269 3 1 1 30 60 -1.573 -0.596 -8.737 0.000 0.000 0.000 0.000 [ MATL 69 ] 94 - U - + - ML 270 269 3 272 3 1 1 28 59 -16.335 -0.027 -5.760 -1.574 -2.214 -0.875 1.538 D 271 269 3 272 3 0 0 27 57 -14.491 -0.435 -1.941 IL 272 272 3 272 3 1 1 29 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 95 - c - + - ML 273 272 3 275 3 1 1 27 58 -16.417 -0.012 -6.870 0.474 0.708 -1.065 -1.001 D 274 272 3 275 3 0 0 25 56 -13.301 -0.853 -1.165 IL 275 275 3 275 3 1 1 28 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 96 - a - + - ML 276 275 3 278 3 1 1 26 57 -5.038 -0.268 -2.848 0.892 -1.772 0.342 -0.777 D 277 275 3 278 3 0 0 23 54 -12.670 -1.844 -0.471 IL 278 278 3 278 3 1 1 27 57 -2.024 -0.529 -4.031 0.000 0.000 0.000 0.000 [ MATL 72 ] 99 - A - + - ML 279 278 3 281 3 1 1 25 56 -16.232 -0.239 -2.713 1.443 -1.434 -2.392 -0.472 D 280 278 3 281 3 0 0 18 49 -15.225 -5.622 -0.030 IL 281 281 3 281 3 1 1 26 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 100 - A - + - ML 282 281 3 284 3 1 1 25 55 -3.943 -0.618 -1.820 1.178 -1.420 -1.381 -0.030 D 283 281 3 284 3 0 0 10 40 -16.073 -7.535 -0.008 IL 284 284 3 284 3 1 1 28 59 -0.873 -1.323 -4.205 0.000 0.000 0.000 0.000 [ MATL 74 ] 105 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.285 0.377 -3.841 0.856 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Phe LENG 90 MAXL 150 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:55:03 2015 COM [1] cmbuild --hand --enone Phe_model.cm aligntRNAdb-Phe.sto NSEQ 1384 EFFN 24.404678 CKSUM 788920421 STATS LOCAL MSV -8.8111 0.71867 STATS LOCAL VITERBI -9.7029 0.71867 STATS LOCAL FORWARD -3.5395 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.11344 1.60002 1.48753 1.41161 1.38629 1.38629 1.38629 1.38629 0.09112 5.49410 2.48920 1.46634 0.26236 0.00000 * 1 1.79880 2.95745 0.35256 2.52992 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00897 5.41195 5.41195 1.46634 0.26236 2.12685 0.12694 2 2.78351 1.15986 2.57852 0.60009 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.00918 5.42537 5.35346 1.46634 0.26236 3.02235 0.04991 3 2.05816 1.55496 2.15111 0.60741 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.00885 5.42505 5.42505 1.46634 0.26236 0.10607 2.29623 4 1.07502 1.51283 2.05130 1.17165 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02509 3.90820 5.35925 0.36629 1.18190 1.12316 0.39341 5 1.11821 1.57762 1.71488 1.24937 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.00820 5.50111 5.50111 1.46634 0.26236 1.17177 0.37080 6 1.83006 1.33374 2.08316 0.79503 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01970 4.17175 5.50111 0.46496 0.98929 1.09986 0.40484 7 1.63648 3.13696 0.36086 2.73579 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00820 5.50142 5.50142 1.46634 0.26236 1.00591 0.45525 8 3.26881 3.87241 4.62545 0.07113 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 9 0.07006 4.22714 3.33376 4.05093 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.01664 4.38775 5.50204 0.56273 0.84316 1.09861 0.40547 10 2.32700 3.05878 0.21842 2.96277 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 11 3.84357 0.16179 3.54929 2.31047 14 C = - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 12 4.23570 3.33581 5.33999 0.05641 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 13 3.65690 2.49456 4.26982 0.13048 16 U = - < 1.38629 1.38629 1.38629 1.38629 0.00889 5.50204 5.34413 1.46634 0.26236 1.09861 0.40547 14 0.04230 5.33782 3.47199 5.19334 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00968 5.50135 5.19442 1.46634 0.26236 1.15407 0.37885 15 0.61124 1.57280 3.00169 1.60865 18 A + - _ 1.38629 1.38629 1.38629 1.38629 0.32090 5.49988 1.30779 1.46634 0.26236 1.26139 0.33304 16 1.30929 1.39653 2.86409 0.85449 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.66028 5.19018 0.73873 1.46634 0.26236 4.22962 0.01466 17 1.85854 1.38702 2.79794 0.62859 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.81275 1.69682 0.98591 0.22662 1.59565 0.05622 2.90641 18 0.69336 1.97309 1.64698 1.78111 23 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01238 5.32034 4.90429 1.46634 0.26236 1.60237 0.22492 19 1.30368 1.51837 1.48802 1.26026 24 u + - _ 1.38629 1.38629 1.38629 1.38629 0.26437 5.35539 1.48023 1.46634 0.26236 2.78606 0.06365 20 2.35603 1.66850 2.95864 0.40829 25 U + - _ 1.38629 1.38629 1.38629 1.38629 0.50748 0.93661 5.11080 0.48105 0.96269 0.02457 3.71830 21 0.04513 4.35510 4.36265 3.98765 31 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 22 0.27085 4.43237 1.61179 3.65526 32 A = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 23 0.07251 5.45997 3.00094 4.13804 33 A = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 24 2.59758 3.22449 0.15581 3.50501 34 G = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 25 3.14220 0.30026 2.90313 1.82429 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 26 0.30122 3.91666 1.66472 2.97715 36 A + - , 1.38629 1.38629 1.38629 1.38629 0.01579 4.45784 5.50204 0.59845 0.79776 1.09861 0.40547 27 1.60387 1.82780 2.18335 0.64350 38 U = - < 1.38629 1.38629 1.38629 1.38629 0.03834 5.50204 3.39515 1.46634 0.26236 1.09861 0.40547 28 1.06614 2.55113 0.74156 2.28964 39 g = - < 1.38629 1.38629 1.38629 1.38629 0.00844 5.47214 5.47214 1.46634 0.26236 2.32461 0.10294 29 0.86600 3.25834 0.72784 2.84787 40 g = - < 1.38629 1.38629 1.38629 1.38629 0.01972 5.47214 4.17802 1.46634 0.26236 0.21771 1.63146 30 3.11531 0.29918 2.35070 2.12942 41 C = - < 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 1.73127 0.19487 31 0.49213 2.44040 1.70423 2.12325 42 A = - < 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 1.73127 0.19487 32 3.52346 0.33669 3.56705 1.47782 43 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 1.73127 0.19487 33 3.71074 4.24684 4.88683 0.04742 44 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 0.43714 1.03812 34 4.07487 3.52346 0.05572 4.86604 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 35 0.07090 3.36743 3.86088 4.34916 46 A * - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 36 0.05557 5.21693 3.15868 5.09140 47 A * - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 37 0.87848 4.88740 0.56595 4.68553 48 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 38 0.18923 2.26858 3.74692 3.09318 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 39 2.52625 1.86277 2.18396 0.42740 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 40 2.26775 2.40767 0.28396 2.92560 51 G = - > 1.38629 1.38629 1.38629 1.38629 0.03834 3.39515 5.50204 0.77885 0.61421 1.09861 0.40547 41 3.02678 0.72335 3.05152 0.86960 54 c = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 42 2.47356 0.86982 2.41109 0.89901 55 c = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 43 0.68557 2.36991 1.69159 1.52104 56 A = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 44 0.25213 2.69443 2.27046 2.95631 57 A + - , 1.38629 1.38629 1.38629 1.38629 0.11153 5.50204 2.28816 1.46634 0.26236 1.09861 0.40547 45 1.74464 3.37113 0.29852 3.01545 58 G + - , 1.38629 1.38629 1.38629 1.38629 2.40386 5.39960 0.09969 1.46634 0.26236 0.37131 1.17063 46 2.45379 3.02211 0.20588 2.96809 59 G = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 47 0.52746 2.42017 1.47619 2.38072 60 A = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 48 2.72245 1.73612 2.45629 0.39700 61 U = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 49 2.43308 3.00008 0.21145 2.93675 62 G = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 50 2.43184 2.99875 0.21179 2.93487 63 G = - < 1.38629 1.38629 1.38629 1.38629 0.68157 3.67730 0.75740 1.46634 0.26236 5.34067 0.00480 51 1.79926 1.30708 1.07869 1.49643 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.42139 0.00443 52 1.79931 1.30707 1.07867 1.49644 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.72995 0.06745 53 0.58506 2.31131 1.61705 1.92889 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05757 3.57663 3.57663 1.46634 0.26236 4.72234 0.00893 54 1.13006 1.53305 2.03938 1.10564 67 u + - _ 1.38629 1.38629 1.38629 1.38629 0.05613 3.60121 3.60121 1.46634 0.26236 5.35446 0.00474 55 0.87052 2.01212 1.57570 1.42421 68 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29601 2.16093 1.95898 0.42088 1.06848 5.35446 0.00474 56 0.94179 1.96199 1.48112 1.41837 70 a + - _ 1.38629 1.38629 1.38629 1.38629 0.48476 3.48049 1.04026 1.46634 0.26236 5.37397 0.00465 57 1.73058 1.22007 1.16199 1.53831 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.42139 0.00443 58 1.73051 1.22010 1.16201 1.53829 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.50148 0.08552 59 3.12612 0.24896 2.82846 2.14220 73 C = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 60 3.12807 0.24873 2.82929 2.14259 74 C = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 61 0.45115 2.63314 1.57299 2.47896 75 A = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 62 2.60004 0.48917 2.22953 1.58466 76 C = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 63 3.15347 0.24576 2.84002 2.14762 77 C = - > 1.38629 1.38629 1.38629 1.38629 0.68157 3.67730 0.75740 1.46634 0.26236 0.01702 4.08188 64 0.29576 4.32219 1.57777 3.31520 78 A + - , 1.38629 1.38629 1.38629 1.38629 0.12105 2.28477 4.40500 0.18651 1.77107 0.14045 2.03228 65 1.87798 1.38595 2.81988 0.62101 81 U + - , 1.38629 1.38629 1.38629 1.38629 0.00828 5.49116 5.49116 1.46634 0.26236 1.73222 0.19467 66 1.75253 4.04638 0.24000 3.79183 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02914 5.49116 3.70525 1.46634 0.26236 1.73222 0.19467 67 1.23453 2.28238 0.64056 2.52582 83 G = - < 1.38629 1.38629 1.38629 1.38629 0.01409 5.47048 4.62721 1.46634 0.26236 2.17804 0.12021 68 1.32598 2.22111 0.84519 1.62714 84 g = - < 1.38629 1.38629 1.38629 1.38629 0.20776 3.53159 1.84299 0.26761 1.44906 2.37651 0.09747 69 1.58598 1.10097 1.72046 1.25977 86 c = - < 1.38629 1.38629 1.38629 1.38629 0.34920 5.29883 1.23874 1.46634 0.26236 2.68128 0.07093 70 1.61627 1.00014 1.53769 1.52024 87 c = - < 1.38629 1.38629 1.38629 1.38629 0.20508 3.00103 1.99742 0.93468 0.49875 0.88736 0.53059 71 1.31362 1.46152 2.60787 0.85431 91 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03339 3.61621 5.12398 0.68411 0.70227 0.33836 1.24806 72 2.19340 2.56012 2.03292 0.38535 94 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02589 5.41242 3.85875 1.46634 0.26236 0.37115 1.17099 73 1.09427 1.02662 2.01443 1.75098 95 c + - _ 1.38629 1.38629 1.38629 1.38629 0.01635 5.46390 4.42484 1.46634 0.26236 0.69157 0.69473 74 0.85053 2.29731 1.24092 1.69737 96 a + - _ 1.38629 1.38629 1.38629 1.38629 0.17438 3.51940 2.03709 0.47973 0.96483 1.21465 0.35213 75 0.48128 2.19897 2.59323 1.62805 99 A + - _ 1.38629 1.38629 1.38629 1.38629 0.15774 5.35056 1.95771 1.46634 0.26236 3.47838 0.03134 76 0.70203 2.10112 2.10285 1.34709 100 a + - _ 1.38629 1.38629 1.38629 1.38629 0.38238 2.76870 1.36642 0.79530 0.60047 3.91308 0.02018 77 1.50426 1.20084 2.71312 0.89027 105 u + - _ 1.38629 1.38629 1.38629 1.38629 0.83841 3.38693 0.62775 0.74367 0.64506 0.54059 0.87324 78 1.19695 1.49196 1.39197 1.49447 108 a = - > 1.38629 1.38629 1.38629 1.38629 0.03344 3.74159 4.69185 0.56221 0.84385 0.73646 0.65163 79 1.30312 1.73859 1.12270 1.48215 110 g = - > 1.38629 1.38629 1.38629 1.38629 0.12522 2.19267 5.10269 0.40825 1.09306 0.67020 0.71664 80 1.76624 0.83575 2.06446 1.31457 113 c = - > 1.38629 1.38629 1.38629 1.38629 0.00930 5.37555 5.37555 1.46634 0.26236 1.25102 0.33717 81 2.78824 0.61391 2.88015 1.07554 114 C = - > 1.38629 1.38629 1.38629 1.38629 0.04021 3.35380 5.41279 0.42718 1.05654 0.20779 1.67332 82 4.11696 0.28724 3.85136 1.55058 117 C = - > 1.38629 1.38629 1.38629 1.38629 0.02063 4.38280 4.83692 0.56534 0.83971 0.45292 1.00997 83 2.82697 0.42819 2.94384 1.44198 119 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00853 5.49826 5.42635 1.46634 0.26236 1.36736 0.29407 84 0.93805 2.34037 1.13484 1.65630 120 a = - ) 1.38629 1.38629 1.38629 1.38629 0.00822 5.49796 5.49796 1.46634 0.26236 1.24368 0.34013 85 1.30379 1.81598 1.45287 1.10285 121 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01802 4.28556 5.49859 0.51572 0.90899 0.77512 0.61738 86 0.94093 2.13625 1.19699 1.66317 123 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01688 4.37038 5.49947 0.55545 0.85288 1.12316 0.39341 87 0.84502 2.31515 1.10347 1.96624 125 a = - ) 1.38629 1.38629 1.38629 1.38629 0.00821 5.49947 5.49947 1.46634 0.26236 1.05125 0.43002 88 0.63388 2.78678 1.09730 2.60258 126 A = - ) 1.38629 1.38629 1.38629 1.38629 0.00821 5.49977 5.49977 1.46634 0.26236 1.09861 0.40547 89 2.72323 0.37428 2.82904 1.67406 127 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00868 5.49977 5.39236 1.46634 0.26236 1.09861 0.40547 90 0.12105 3.30035 2.87223 3.88408 128 A + - : 1.38629 1.38629 1.38629 1.38629 0.00411 5.49521 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Pro STATES 289 NODES 76 CLEN 90 W 99 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:55:14 2015 COM [1] cmbuild --hand --enone Pro_model.cm aligntRNAdb-Pro.sto COM [2] cmcalibrate --seed 208 Pro_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 2580016069 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.6791 0.71874 ECMLC 0.56470 -9.36018 1.50720 1600000 555074 0.002162 ECMGC 0.30665 -49.17221 -33.25022 1600000 52782 0.007578 ECMLI 0.57672 -8.78445 1.81486 1600000 541939 0.002214 ECMGI 0.31996 -44.49556 -29.38803 1600000 50276 0.007956 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 99 125 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 36 101 126 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 38 101 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 99 - A - + MR 3 2 3 5 5 22 45 99 125 -13.126 -0.001 -12.941 -13.153 -14.045 1.977 -5.293 -4.850 -8.801 D 4 2 3 5 5 14 33 98 123 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 36 100 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 98 C G = = MP 6 5 3 10 6 22 44 98 124 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 7 5 3 10 6 15 34 97 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 34 97 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 31 94 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 35 98 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 36 98 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 97 A U = = MP 12 11 6 16 6 22 43 96 122 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 13 11 6 16 6 15 34 95 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 34 95 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 30 92 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 35 96 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 35 96 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 96 g u = = MP 18 17 6 22 6 22 41 94 120 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.100 -8.758 -10.295 2.199 -12.435 -13.561 -7.892 -10.338 -9.854 2.112 -10.523 2.821 -7.817 -11.595 -9.723 -8.894 ML 19 17 6 22 6 15 34 93 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 34 93 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 30 90 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 35 94 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 35 94 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 95 G C = = MP 24 23 6 28 6 20 39 92 118 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.407 -8.658 -12.370 1.188 -13.324 -10.074 -7.928 -12.270 -9.975 3.769 -10.253 -3.715 -8.197 -10.439 -10.237 -11.058 ML 25 23 6 28 6 15 33 91 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 33 91 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 30 88 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 15 34 92 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 35 92 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 94 G C = = MP 30 29 6 34 6 18 37 90 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.591 -8.706 -10.960 2.295 -12.792 -10.978 -7.899 -10.978 -9.910 3.434 -10.383 -1.901 -7.981 -10.911 -9.940 -9.576 ML 31 29 6 34 6 14 33 89 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 33 89 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 30 86 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 34 90 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 34 90 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 93 A U = = MP 36 35 6 40 6 16 35 88 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.863 -12.435 -13.590 -7.893 -10.336 -9.854 -1.520 -10.524 0.113 -7.817 -11.599 -9.723 -8.892 ML 37 35 6 40 6 14 32 87 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 32 87 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 30 85 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 33 88 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 33 88 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 92 A U = = MP 42 41 6 46 4 14 33 86 112 -13.280 -13.487 -0.001 -11.901 -10.103 -8.757 -10.300 3.156 -12.436 -13.478 -7.888 -10.343 -9.854 2.436 -10.521 0.726 -7.816 -11.582 -9.722 -8.899 ML 43 41 6 46 4 13 31 86 112 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 30 86 111 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 29 85 110 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 32 87 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 32 87 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 12 31 84 110 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 29 83 108 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 31 86 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 11 30 83 109 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 10 29 82 108 -8.445 -0.004 IL 53 53 3 53 2 12 30 84 110 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 29 82 108 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 23 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G U = = MP 58 57 1 62 6 2 3 23 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 -2.529 -12.434 -13.588 -7.892 -10.337 -9.854 1.245 -10.524 3.748 -7.817 -11.599 -9.723 -8.892 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 U A = = MP 64 63 6 68 6 2 3 21 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.101 -11.347 -10.426 -7.586 -8.785 -10.578 -4.497 -9.696 -2.258 -7.570 -10.650 -9.692 3.938 -10.946 -1.315 -9.329 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 3 19 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.039 -10.975 -10.448 -7.253 -8.899 -10.687 -4.623 -9.762 -10.470 -7.328 -10.672 -8.945 3.958 -10.963 -6.538 -1.388 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U G = = MP 76 75 6 80 4 2 3 17 36 -13.280 -13.487 -0.001 -11.901 -11.109 -11.388 -3.341 -7.625 -8.778 -10.571 -2.718 -9.693 -10.530 -7.598 -2.259 -9.788 -1.276 -10.944 3.917 -9.332 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 15 33 -14.190 -0.109 -3.780 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 32 -14.081 -1.235 -0.798 1.766 -7.338 -2.146 -1.444 D 86 84 3 87 3 0 0 13 31 -11.854 -7.367 -0.009 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 14 32 -12.847 -0.279 -2.507 -1.306 -0.988 -3.511 1.587 D 89 87 3 90 3 0 0 12 30 -14.889 -10.402 -0.001 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 13 31 -12.568 -5.189 -0.040 -0.538 -1.656 -5.978 1.574 D 92 90 3 93 3 0 0 12 30 -15.045 -0.044 -5.070 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - g - + - ML 94 93 3 96 3 1 1 12 30 -13.602 -0.000 -12.256 0.604 -6.757 0.833 -0.537 D 95 93 3 96 3 0 0 10 28 -14.037 -9.550 -0.002 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - + - ML 97 96 3 99 3 1 1 10 29 -13.602 -1.711 -0.526 -0.035 -2.792 -0.582 1.145 D 98 96 3 99 3 0 0 9 27 -14.037 -9.550 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 14 -3.282 -0.158 -10.546 -1.587 -2.635 -5.481 1.801 D 101 99 3 102 3 0 0 6 12 -6.016 -0.024 -9.675 IL 102 102 3 102 3 1 1 7 13 -4.199 -0.094 -6.899 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.957 -9.696 -9.312 -3.130 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - u - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.267 -2.764 -0.023 0.736 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -2.847 -10.571 1.453 -9.692 -10.530 -7.599 -10.650 -9.795 3.582 -10.943 0.179 -9.332 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 C G = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -1.924 3.841 -9.692 -10.530 -7.600 -10.650 -9.796 -0.806 -10.943 -0.288 -9.332 ML 119 117 6 122 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.011 -7.077 -13.073 -13.468 -10.099 -8.759 -10.294 3.921 -12.434 -13.590 -7.893 -10.336 -9.854 -0.858 -10.524 -1.829 -7.817 -11.599 -9.723 -8.892 ML 125 123 6 128 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 g u = = MP 130 129 6 134 6 2 2 20 39 -14.067 -14.007 -0.001 -12.783 -13.063 -13.458 -10.180 -8.737 -10.402 -0.857 -12.494 -12.520 -7.885 -10.441 -9.855 2.921 -10.482 2.974 -7.841 -11.414 -9.758 -9.003 ML 131 129 6 134 6 1 1 22 41 -8.260 -8.607 -0.231 -3.015 -8.456 -5.986 -1.718 -2.959 1.753 -2.346 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 C G = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.856 -9.692 -10.530 -7.600 -10.650 -9.795 0.056 -10.943 -1.127 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - G - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - G - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -2.292 -3.754 -2.379 1.819 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 51 77 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 53 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - U - + - ML 166 165 2 168 3 1 4 51 77 -14.190 -0.000 -12.844 -2.288 -1.876 -3.488 1.780 D 167 165 2 168 3 0 3 49 75 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 3 50 76 -14.843 -0.000 -1.164 -10.245 1.828 -9.345 D 170 168 3 171 2 0 2 49 75 -8.445 -0.004 IL 171 171 3 171 2 1 3 51 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 49 75 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 36 62 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 39 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - G - + - ML 231 230 2 233 3 1 3 36 62 -5.024 -0.045 -12.844 -5.205 -10.299 1.966 -3.926 D 232 230 2 233 3 0 0 34 60 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 36 62 -4.105 -0.100 -6.805 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - U - + - ML 234 233 3 236 5 1 3 35 61 -13.126 -0.001 -12.941 -13.153 -14.045 -4.431 -1.254 -4.036 1.796 D 235 233 3 236 5 0 0 34 59 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 35 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 91 G C = = MP 237 236 3 241 6 2 4 34 60 -14.078 -5.778 -0.027 -12.794 -13.073 -13.468 -10.515 -8.711 -10.851 1.294 -12.734 -11.141 -7.892 -10.875 -9.902 3.388 -10.399 1.616 -7.953 -10.980 -9.904 -9.465 ML 238 236 3 241 6 1 1 33 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 33 59 -4.543 -0.099 -8.054 -6.222 -7.328 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 89 G U = = MP 243 242 6 247 6 2 3 32 58 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 1.868 -12.435 -13.589 -7.893 -10.337 -9.854 1.178 -10.524 3.332 -7.817 -11.599 -9.723 -8.892 ML 244 242 6 247 6 1 1 31 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 32 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 88 g c = = MP 249 248 6 253 6 2 2 30 56 -14.078 -5.469 -0.044 -12.794 -13.073 -7.087 -10.133 -8.751 -10.337 2.304 -12.454 -13.039 -7.882 -10.380 -9.857 2.831 -10.509 1.974 -7.822 -11.514 -9.731 -8.938 ML 250 248 6 253 6 1 1 29 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 28 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 26 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 29 54 -4.788 -0.812 -8.299 -1.375 -7.573 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 86 G C = = MP 255 254 6 259 6 2 2 28 54 -14.052 -13.991 -0.870 -7.293 -3.388 -1.511 -9.081 -7.712 -9.017 1.045 -10.357 -9.950 -5.475 -9.498 -9.138 3.589 -2.323 0.339 -5.695 -9.129 -1.718 -3.684 ML 256 254 6 259 6 1 1 27 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 25 51 -9.244 -7.973 -3.882 -7.952 -0.138 -6.165 -2.333 -3.655 1.848 -3.037 D 258 254 6 259 6 0 0 25 50 -11.329 -10.027 -5.824 -6.507 -6.524 -0.060 IL 259 259 5 259 6 1 1 28 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 28 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 85 C G = = MP 261 260 6 265 4 2 2 27 53 -12.360 -12.567 -0.389 -2.085 -7.508 -7.210 -1.970 0.199 -6.375 -8.351 3.415 -7.028 -7.367 0.181 -7.880 -1.294 0.367 -7.691 0.049 -6.087 ML 262 260 6 265 4 1 1 25 51 -5.295 -5.477 -2.043 -0.495 0.876 -0.122 -1.061 -0.384 MR 263 260 6 265 4 1 1 24 49 -10.284 -9.313 -2.824 -0.224 0.363 -3.862 1.153 -1.243 D 264 260 6 265 4 0 0 25 50 -12.024 -11.705 -0.595 -1.568 IL 265 265 5 265 4 1 1 28 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 27 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - U - + - ML 267 266 6 269 3 1 1 25 51 -4.505 -0.091 -5.892 -2.398 -2.719 -1.637 1.738 D 268 266 6 269 3 0 0 16 41 -14.068 -0.251 -2.649 IL 269 269 3 269 3 1 1 29 54 -1.035 -0.980 -7.608 0.000 0.000 0.000 0.000 [ MATL 69 ] 76 - U - + - ML 270 269 3 272 3 1 1 16 32 -14.094 -0.065 -4.500 -0.811 -3.958 0.070 1.212 D 271 269 3 272 3 0 0 15 32 -11.692 -0.173 -3.150 IL 272 272 3 272 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 77 - u - + - ML 273 272 3 275 3 1 1 15 31 -14.120 -0.000 -12.774 0.397 -0.898 -1.179 0.769 D 274 272 3 275 3 0 0 14 31 -11.261 -0.149 -3.356 IL 275 275 3 275 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 78 - G - + - ML 276 275 3 278 3 1 1 14 30 -5.835 -0.350 -2.335 -0.007 -4.383 1.151 -0.442 D 277 275 3 278 3 0 0 13 29 -8.040 -0.303 -2.431 IL 278 278 3 278 3 1 1 14 30 -3.450 -0.161 -6.150 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - A - + - ML 279 278 3 281 3 1 1 13 29 -13.873 -0.351 -2.213 1.132 -3.632 -0.467 0.007 D 280 278 3 281 3 0 0 10 28 -13.278 -8.791 -0.003 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 81 - U - + - ML 282 281 3 284 3 1 1 12 24 -3.460 -0.484 -2.364 -1.042 -3.577 0.500 1.012 D 283 281 3 284 3 0 0 6 18 -14.181 -4.692 -0.057 IL 284 284 3 284 3 1 1 12 25 -2.123 -0.493 -4.064 0.000 0.000 0.000 0.000 [ MATL 74 ] 84 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.025 -3.248 -0.107 0.962 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Pro LENG 90 MAXL 172 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:55:14 2015 COM [1] cmbuild --hand --enone Pro_model.cm aligntRNAdb-Pro.sto NSEQ 282 EFFN 3.937225 CKSUM 2580016069 STATS LOCAL MSV -8.8411 0.71874 STATS LOCAL VITERBI -9.8066 0.71874 STATS LOCAL FORWARD -3.6258 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44932 1.72203 1.26211 1.19234 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 0.00000 * 1 3.86355 0.12277 3.71816 2.65549 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 2 0.15828 3.59070 2.43029 3.48015 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 3 1.30817 2.89723 0.49693 2.71634 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 4 1.95893 3.25702 0.25310 3.12129 4 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 5 1.44493 2.91684 0.43510 2.76567 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 6 0.29163 3.49023 1.69465 3.24932 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 7 0.96107 2.77906 0.72985 2.61130 7 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 8 3.22225 3.08696 3.75783 0.11523 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 9 0.07878 3.87624 3.54389 3.64463 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 10 2.13824 3.49132 0.20706 3.25166 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 11 3.79704 2.81437 3.52670 0.11854 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 12 3.88487 2.91492 3.69883 0.10482 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 13 2.92584 1.77359 2.68279 0.34491 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 14 0.07878 3.87624 3.54389 3.64463 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08188 4.26525 2.73995 1.46634 0.26236 1.09861 0.40547 15 0.39334 2.55096 2.23815 1.96229 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.54499 4.21341 0.90299 1.46634 0.26236 1.88654 0.16440 16 1.57168 1.68635 2.14055 0.71433 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.14130 3.71820 2.23036 1.46634 0.26236 3.49630 0.03078 17 1.44717 1.73739 2.11490 0.75899 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.62934 3.63132 0.81968 1.46634 0.26236 0.08442 2.51387 18 1.09232 2.13186 1.16056 1.45828 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03732 3.99999 3.99999 1.46634 0.26236 2.97479 0.05241 19 1.30776 1.91708 1.74333 0.89747 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.60758 3.99999 0.82778 1.46634 0.26236 2.49876 0.08576 20 1.51810 1.75749 2.06525 0.73063 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09841 2.76767 3.47652 0.80009 0.59654 0.04899 3.04061 21 0.13649 3.37120 3.21726 2.93423 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 22 2.13525 2.96481 0.26511 2.76318 23 G = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 23 0.12355 3.88021 2.74023 3.47317 24 A = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 24 0.13668 3.76072 2.58377 3.54057 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 25 3.41663 1.51254 3.25691 0.34486 26 U = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 26 1.20168 1.99941 1.53960 1.05146 27 u + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 27 2.70353 1.27388 2.47956 0.56298 28 U = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 28 3.05561 0.31077 2.83907 1.82300 29 C = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 29 0.23881 3.56800 1.90522 3.34008 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 30 2.03058 3.06750 0.26573 2.89039 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 31 3.20793 0.31701 3.00576 1.70520 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 32 3.22225 3.08696 3.75783 0.11523 33 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 33 3.22225 3.08696 3.75783 0.11523 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 34 3.22225 3.08696 3.75783 0.11523 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 35 3.32424 4.27331 0.07427 3.83317 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 36 3.32424 4.27331 0.07427 3.83317 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 37 3.32424 4.27331 0.07427 3.83317 38 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 38 2.10526 2.31625 2.52039 0.35794 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 39 2.00852 3.16938 0.25799 2.97246 40 G = - > 1.38629 1.38629 1.38629 1.38629 0.03381 4.26525 3.95287 1.46634 0.26236 1.09861 0.40547 40 3.12631 0.69872 2.87593 0.90997 41 c = - > 1.38629 1.38629 1.38629 1.38629 0.02865 4.26009 4.26009 1.46634 0.26236 0.90154 0.52078 41 3.54249 2.25626 3.35834 0.18449 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 42 2.19651 2.87292 0.25743 2.82615 43 G = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 43 0.69062 2.65028 1.06871 2.46918 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 44 2.09369 2.09468 2.64368 0.38191 45 U + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 45 2.03169 3.39512 0.24002 3.02125 46 G + - , 1.38629 1.38629 1.38629 1.38629 1.26952 4.26525 0.34958 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 47 1.80323 1.30586 1.07721 1.49723 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 48 1.80100 1.30655 1.07804 1.49678 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 49 1.80003 1.30685 1.07840 1.49658 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 50 1.79967 1.30696 1.07853 1.49651 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 51 1.79961 1.30697 1.07855 1.49650 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 52 1.79970 1.30695 1.07852 1.49652 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 57 1.73092 1.21992 1.16186 1.53841 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 58 1.73080 1.21998 1.16191 1.53837 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 59 1.73074 1.22000 1.16193 1.53836 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 60 1.73083 1.21996 1.16190 1.53838 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 61 1.73116 1.21982 1.16177 1.53848 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 62 1.73194 1.21949 1.16149 1.53871 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95476 0.01935 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03908 3.26161 64 2.97038 3.87904 0.11492 3.30751 65 G + - , 1.38629 1.38629 1.38629 1.38629 0.05070 3.34141 4.26525 0.66467 0.72245 1.09861 0.40547 65 2.31019 1.99446 2.77277 0.35356 67 U + - , 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 66 1.71336 2.86667 0.36184 2.71114 68 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 67 1.36570 3.18814 0.42683 2.97641 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 68 1.34936 2.75949 0.50633 2.59604 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.04149 4.26525 3.62699 1.46634 0.26236 1.09861 0.40547 69 1.66067 2.40803 0.49374 2.21040 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.42016 4.25263 1.11221 1.46634 0.26236 1.35923 0.29687 70 1.84932 1.02007 1.56114 1.30126 72 c = - < 1.38629 1.38629 1.38629 1.38629 0.19310 3.87487 1.86533 1.46634 0.26236 0.65405 0.73384 71 1.83035 2.01054 2.17195 0.52464 73 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07607 3.10481 3.56066 0.98920 0.46501 0.26647 1.45278 72 1.47993 2.06850 1.54801 0.83632 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06126 4.21916 3.10751 1.46634 0.26236 0.46828 0.98371 73 1.17701 1.72847 1.86656 1.02279 77 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02949 4.23153 4.23153 1.46634 0.26236 0.52493 0.89550 74 1.30561 2.25608 0.91115 1.50431 78 g + - _ 1.38629 1.38629 1.38629 1.38629 0.19586 3.64128 1.88615 0.86229 0.54852 0.98652 0.46661 75 0.88323 2.05633 1.66578 1.31085 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.18873 4.11768 1.85978 1.46634 0.26236 2.54682 0.08157 76 1.45475 1.96999 1.39353 0.97052 81 u + - _ 1.38629 1.38629 1.38629 1.38629 0.22531 2.68306 2.01454 0.62542 0.76579 2.53545 0.08254 77 1.27081 1.90147 1.59842 1.00013 84 u + - _ 1.38629 1.38629 1.38629 1.38629 0.42308 3.86060 1.12726 1.46634 0.26236 0.23919 1.54770 78 1.53444 1.74220 0.87905 1.63933 85 g = - > 1.38629 1.38629 1.38629 1.38629 0.03838 3.97257 3.97257 1.46634 0.26236 0.11920 2.18598 79 2.52609 0.60990 2.14018 1.35096 86 C = - > 1.38629 1.38629 1.38629 1.38629 0.04530 3.50106 4.26009 0.76637 0.62492 0.90154 0.52078 80 2.84154 0.77394 2.56441 0.90756 88 c = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 81 3.18698 1.45497 2.97867 0.39388 89 U = - > 1.38629 1.38629 1.38629 1.38629 0.04183 3.61490 4.26525 0.84116 0.56424 1.09861 0.40547 82 2.95795 0.53534 2.67393 1.22546 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 83 2.84922 0.93209 2.58323 0.74897 92 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 84 3.44636 2.22410 3.27808 0.19568 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 85 3.00671 0.50308 2.72797 1.27108 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 86 3.34629 0.29223 3.07840 1.75938 95 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 87 2.95242 1.05683 2.69980 0.62921 96 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 88 3.70920 2.79885 3.40350 0.12628 97 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 89 2.94838 3.90353 0.10340 3.66367 98 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02850 4.26525 4.26525 1.46634 0.26236 1.09861 0.40547 90 0.11787 3.46606 3.14260 3.30293 99 A + - : 1.38629 1.38629 1.38629 1.38629 0.01435 4.25111 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1 | October 2013] NAME SerGCT STATES 242 NODES 62 CLEN 76 W 133 ALPH RNA RF yes CONS yes MAP yes DATE Mon Feb 23 12:27:00 2015 COM [1] cmbuild --hand --enone Ser-GCT_model.cm aligntrnadb-Ser-GCT-D_arm4.sto COM [2] cmcalibrate --seed 208 Ser-GCT_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3771917286 NULL 0.000 0.000 0.000 0.000 EFP7GF -14.6907 0.71882 ECMLC 0.65181 -5.75978 3.20688 1600000 414408 0.002896 ECMGC 0.33159 -30.51674 -15.26176 1600000 62932 0.006356 ECMLI 0.66618 -4.95607 3.70964 1600000 385767 0.003111 ECMGI 0.32977 -26.95359 -11.87263 1600000 57802 0.006920 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 133 216 -13.075 -14.320 -7.388 -0.009 IL 1 1 2 1 4 9 31 134 217 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 9 31 134 218 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 103 - a - + MR 3 2 3 5 3 8 30 133 216 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 4 2 3 5 3 7 32 130 214 -15.570 -10.748 -0.001 IR 5 5 3 5 3 8 30 133 217 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 102 - a - + MR 6 5 3 8 3 7 29 132 215 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 7 5 3 8 3 7 32 130 214 -15.570 -10.748 -0.001 IR 8 8 3 8 3 7 29 132 216 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 101 - a - + MR 9 8 3 11 3 6 28 131 214 -7.424 -0.036 -5.741 0.368 -0.385 -0.191 0.094 D 10 8 3 11 3 7 32 130 214 -15.570 -0.002 -9.800 IR 11 11 3 11 3 5 26 131 215 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 100 - A - + MR 12 11 3 14 5 9 34 130 214 -13.126 -0.001 -12.941 -13.153 -14.045 1.728 -4.960 -1.375 -1.894 D 13 11 3 14 5 3 22 128 211 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 4 24 130 213 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 99 G C = = MP 15 14 3 19 6 10 33 129 213 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.613 -8.702 -10.991 1.556 -12.801 -10.926 -7.892 -11.009 -9.911 3.456 -10.376 1.051 -7.981 -10.884 -9.942 -9.610 ML 16 14 3 19 6 4 23 126 210 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 4 23 126 210 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 2 20 122 205 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 4 24 128 212 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 4 24 128 211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 98 A U = = MP 21 20 6 25 6 9 32 127 211 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -0.708 -10.294 3.922 -12.435 -13.590 -7.893 -10.336 -9.854 -2.985 -10.524 -3.484 -7.818 -11.599 -9.723 -8.892 ML 22 20 6 25 6 4 23 124 208 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 4 23 124 208 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 2 20 119 203 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 4 24 126 210 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 4 24 126 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 97 G C = = MP 27 26 6 31 6 9 30 125 209 -14.078 -5.519 -0.032 -12.794 -13.073 -13.468 -10.024 -8.586 -10.181 2.397 -12.036 -11.827 -7.315 -3.040 -9.766 3.356 -10.346 -2.297 -7.376 -2.789 -9.237 -8.843 ML 28 26 6 31 6 4 23 122 206 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 4 23 122 206 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 2 20 117 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 4 23 124 208 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 5 26 124 207 -4.748 -0.085 -8.259 -6.427 -7.533 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 95 A U = = MP 33 32 6 37 6 9 28 123 206 -4.832 -14.017 -0.052 -12.794 -13.073 -13.468 -0.803 -0.508 -10.294 3.731 -12.435 -13.590 -7.893 -10.336 -9.854 0.467 -10.524 -4.472 -7.818 -11.599 -9.724 -8.892 ML 34 32 6 37 6 4 22 120 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 4 22 120 204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 2 20 115 199 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 5 26 122 205 -6.138 -6.401 -0.051 -8.056 -8.833 -8.493 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 4 23 122 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 94 A U = = MP 39 38 6 43 6 9 26 121 204 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -1.040 0.035 -10.275 3.661 -12.392 -13.447 -7.835 -3.620 -9.846 0.374 -10.511 -2.338 -3.322 -2.727 -9.673 -8.878 ML 40 38 6 43 6 4 22 118 202 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 4 22 118 201 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 2 19 113 197 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 4 23 120 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 4 23 120 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 93 A U = = MP 45 44 6 49 6 7 24 119 202 -5.003 -14.017 -0.046 -12.794 -13.073 -13.468 -10.098 -2.318 -10.293 3.853 -12.432 -13.584 -7.890 -3.748 -9.854 -0.748 -10.523 -2.646 -2.811 -3.321 -9.721 -1.919 ML 46 44 6 49 6 4 21 115 199 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 4 21 115 199 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 2 19 111 195 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 5 23 118 201 -5.983 -6.245 -0.057 -7.901 -8.677 -8.337 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 4 22 118 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 92 G C = = MP 51 50 6 55 3 5 22 117 200 -0.002 -22.496 -9.192 -11.629 -2.404 -12.904 0.498 -13.446 -9.952 -7.930 -12.728 -9.987 3.840 -10.229 -3.942 -8.238 -10.363 -10.296 -11.649 ML 52 50 6 55 3 3 20 111 194 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 3 3 20 111 194 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 54 50 6 55 3 2 19 110 193 -1.585 -1.585 -1.585 IL 55 55 5 55 3 3 21 115 198 -0.317 -7.131 -2.393 0.000 0.000 0.000 0.000 IR 56 56 6 56 2 3 19 68 94 -5.387 -0.035 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 57 56 6 121 58 2 18 67 93 [ BEGR 45 ] - - - - - - S 58 57 1 59 3 0 2 37 63 -14.190 -0.142 -3.419 IL 59 59 2 59 3 1 3 40 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 61 - c - + - ML 60 59 2 62 3 1 2 37 63 -14.049 -2.489 -0.283 -0.214 0.704 -1.999 0.332 D 61 59 2 62 3 0 1 36 62 -12.210 -7.723 -0.007 IL 62 62 3 62 3 1 3 40 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 62 - U - + - ML 63 62 3 65 3 1 2 37 63 -3.166 -0.172 -10.215 -5.416 0.663 -6.380 1.252 D 64 62 3 65 3 0 1 36 62 -15.357 -0.002 -9.749 IL 65 65 3 65 3 1 1 37 63 -3.485 -0.157 -6.185 0.000 0.000 0.000 0.000 [ MATL 48 ] 64 - C - + - ML 66 65 3 68 5 1 3 36 62 -13.126 -0.001 -12.941 -13.153 -14.045 -1.571 1.213 -7.415 0.421 D 67 65 3 68 5 0 0 35 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 36 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 65 90 C G = = MP 69 68 3 73 6 2 3 35 61 -14.078 -2.841 -0.217 -12.794 -13.073 -13.468 -11.109 -11.391 -1.389 -7.628 -8.777 -10.571 3.845 -9.692 -10.530 -7.599 -10.650 -9.795 0.033 -10.943 -2.278 -9.332 ML 70 68 3 73 6 1 1 33 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 34 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 34 60 -7.166 -0.016 -10.677 -8.845 -9.950 0.000 0.000 0.000 0.000 [ MATP 50 ] 66 88 C G = = MP 75 74 6 79 6 2 3 33 59 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.022 -8.710 -1.371 0.570 -7.780 -9.720 3.677 -8.452 -8.834 -0.964 -9.303 -1.536 -1.786 -9.202 -2.581 -7.572 ML 76 74 6 79 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 33 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 30 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 33 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 33 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 67 87 A U = = MP 81 80 6 85 6 2 3 31 57 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.077 -3.485 -7.902 3.281 -8.891 -8.506 -0.688 -2.089 -8.319 1.634 -8.577 -1.529 0.718 -7.766 -3.982 -2.700 ML 82 80 6 85 6 1 1 30 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 68 86 U A = = MP 87 86 6 91 6 2 2 29 55 -14.078 -14.017 -0.094 -5.054 -5.206 -7.481 -2.738 -3.853 -2.075 0.846 -1.592 -8.911 0.915 -7.738 -7.969 -0.383 -8.494 -3.751 3.346 -8.238 -1.022 -6.775 ML 88 86 6 91 6 1 1 28 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 28 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 30 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 69 85 g c = = MP 93 92 6 97 4 2 2 24 49 -5.422 -13.392 -0.035 -11.806 -1.312 -1.875 -4.340 2.429 0.515 -8.350 -0.302 -2.098 -4.690 2.777 -8.428 -3.195 -1.869 -7.610 -3.054 -6.721 ML 94 92 6 97 4 1 1 25 51 -7.123 -7.306 -0.290 -2.566 -4.643 1.948 -5.223 -3.719 MR 95 92 6 97 4 1 1 32 58 -8.425 -0.114 -5.321 -4.382 1.953 -4.851 -4.305 -4.568 D 96 92 6 97 4 0 0 25 51 -6.468 -6.150 -0.344 -2.420 IL 97 97 5 97 4 1 1 27 52 -4.801 -5.484 -0.093 -7.970 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 31 57 -1.037 -0.980 -7.542 0.000 0.000 0.000 0.000 [ MATL 54 ] 71 - u - + - ML 99 98 6 101 3 1 1 16 35 -1.327 -0.734 -12.837 -0.555 0.520 -4.584 0.882 D 100 98 6 101 3 0 0 16 35 -8.374 -0.235 -2.766 IL 101 101 3 101 3 1 1 16 34 -4.084 -0.089 -10.349 0.000 0.000 0.000 0.000 [ MATL 55 ] 74 - U - + - ML 102 101 3 104 3 1 1 15 33 -14.190 -0.000 -12.844 -1.143 -0.840 -7.671 1.577 D 103 101 3 104 3 0 0 18 37 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 75 - A - + - ML 105 104 3 107 3 1 1 13 32 -14.190 -0.000 -12.844 1.282 -1.925 -3.928 0.310 D 106 104 3 107 3 0 0 17 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 76 - A - + - ML 108 107 3 110 3 1 1 12 30 -3.471 -0.143 -7.851 1.896 -7.824 -3.747 -2.320 D 109 107 3 110 3 0 0 13 31 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 12 30 -5.500 -0.037 -8.200 0.000 0.000 0.000 0.000 [ MATL 58 ] 78 - A - + - ML 111 110 3 113 3 1 1 11 29 -14.184 -0.060 -4.627 1.560 -0.098 -7.480 -3.171 D 112 110 3 113 3 0 0 13 32 -8.139 -0.280 -2.531 IL 113 113 3 113 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 79 - A - + - ML 114 113 3 116 3 1 1 10 18 -1.725 -0.773 -3.156 1.325 -0.025 -2.712 -1.474 D 115 113 3 116 3 0 0 5 14 -11.022 -1.308 -0.748 IL 116 116 3 116 3 1 1 9 18 -3.074 -0.184 -9.999 0.000 0.000 0.000 0.000 [ MATL 60 ] 82 - A - + - ML 117 116 3 119 2 1 1 1 1 * 0.000 1.110 -0.398 -1.154 -0.658 D 118 116 3 119 2 0 0 0 0 * 0.000 IL 119 119 3 119 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 120 119 3 -1 0 0 0 0 0 [ BEGL 13 ] - - - - - - S 121 57 1 122 1 0 2 45 62 0.000 [ BIF 14 ] - - - - - - B 122 121 1 123 176 0 2 45 62 [ BEGL 15 ] - - - - - - S 123 122 1 124 4 0 0 26 44 -0.018 -6.436 -11.604 -12.244 [ MATP 16 ] 19 38 A U = = MP 124 123 1 128 6 2 2 26 44 -4.137 -14.001 -0.085 -12.777 -13.057 -13.452 0.453 -1.788 -1.661 3.637 -12.098 -13.360 -0.101 -10.300 -9.846 -1.108 -10.507 -6.054 -3.778 -11.556 -9.463 -3.407 ML 125 123 1 128 6 1 1 24 42 -8.758 -9.104 -3.818 -0.133 -8.954 -6.483 1.853 -3.243 -2.792 -2.875 MR 126 123 1 128 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 1 128 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 25 43 -6.772 -7.034 -0.033 -8.690 -9.466 -9.126 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 21 37 a a = = MP 130 129 6 134 6 2 2 24 42 -14.062 -14.001 -0.001 -12.777 -13.057 -13.452 2.943 -0.787 -3.094 2.526 -12.415 -13.564 -7.872 -1.216 -2.354 -0.501 -10.506 -4.540 -2.565 -11.579 -9.703 -1.714 ML 131 129 6 134 6 1 1 23 41 -8.758 -9.104 -0.160 -3.513 -8.954 -6.483 1.853 -3.243 -2.792 -2.875 MR 132 129 6 134 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 22 36 G C = = MP 136 135 6 140 6 2 2 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.036 -2.811 -14.486 -6.122 -13.655 -9.790 -7.939 -13.887 -10.006 3.966 -10.195 -2.604 -8.306 -4.635 -10.394 -13.647 ML 137 135 6 140 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 6 140 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 140 140 5 140 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 22 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 23 35 A U = = MP 142 141 6 146 6 2 2 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 1.100 -10.294 3.555 -12.435 -13.590 -7.893 -10.336 -9.854 0.978 -10.524 -3.109 -7.818 -11.599 -9.724 -8.892 ML 143 141 6 146 6 1 1 21 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 1 21 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 6 146 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 21 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 24 34 A U = = MP 148 147 6 152 4 2 2 18 36 -13.280 -5.950 -0.024 -11.901 -3.503 2.747 -10.294 3.095 -12.434 -13.589 -7.892 -10.336 -9.854 -0.677 -10.524 -6.045 -7.817 -11.599 -9.723 -8.892 ML 149 147 6 152 4 1 1 21 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 151 147 6 152 4 0 0 20 37 -4.568 -4.250 -2.265 -0.520 IL 152 152 5 152 4 1 1 22 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 153 153 6 153 3 1 1 17 35 -3.366 -0.171 -6.066 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - C - + - ML 154 153 6 156 3 1 1 15 34 -14.190 -0.000 -12.844 -9.246 1.952 -9.646 -2.972 D 155 153 6 156 3 0 0 19 37 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - U - + - ML 157 156 3 159 3 1 1 14 33 -14.190 -0.000 -12.844 -9.572 -3.868 -10.443 1.974 D 158 156 3 159 3 0 0 18 36 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - G - * - ML 160 159 3 162 3 1 1 13 31 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 161 159 3 162 3 0 0 17 35 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - C - * - ML 163 162 3 165 3 1 1 11 30 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 164 162 3 165 3 0 0 16 34 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - U - * - ML 166 165 3 168 3 1 1 10 28 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 167 165 3 168 3 0 0 14 33 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - A - + - ML 169 168 3 171 3 1 1 7 13 -4.726 -0.056 -12.844 1.999 -10.184 -9.419 -9.524 D 170 168 3 171 3 0 0 5 12 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 7 13 -4.359 -0.083 -7.060 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - A - + - ML 172 171 3 174 2 1 1 1 1 * 0.000 1.946 -2.793 -9.134 -8.942 D 173 171 3 174 2 0 0 0 0 * 0.000 IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 175 174 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 176 122 1 177 3 0 0 27 45 -14.190 -0.000 -12.844 IL 177 177 2 177 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 39 - G - + - ML 178 177 2 180 3 1 1 27 45 -14.190 -0.000 -12.844 -0.800 -0.761 1.172 -0.780 D 179 177 2 180 3 0 0 29 48 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 40 - C - + - ML 181 180 3 183 5 1 1 26 44 -13.126 -6.950 -12.941 -13.153 -0.012 0.332 1.116 -1.955 -1.658 D 182 180 3 183 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 183 183 3 183 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 60 g c = = MP 184 183 3 188 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 185 183 3 188 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 186 183 3 188 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 187 183 3 188 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 188 188 5 188 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 189 189 6 189 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 42 59 g c = = MP 190 189 6 194 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 191 189 6 194 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 6 194 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 6 194 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 194 194 5 194 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 43 58 g c = = MP 196 195 6 200 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 197 195 6 200 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 16 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 200 200 5 200 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 44 57 g c = = MP 202 201 6 206 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 203 201 6 206 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 15 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 206 206 5 206 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 45 56 g c = = MP 208 207 6 212 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 209 207 6 212 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 211 207 6 212 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 212 212 5 212 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 213 213 6 213 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 46 55 g c = = MP 214 213 6 218 6 2 2 20 38 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 215 213 6 218 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 216 213 6 218 6 1 1 18 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 217 213 6 218 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 218 218 5 218 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 219 219 6 219 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 47 54 g c = = MP 220 219 6 224 4 2 2 18 36 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 221 219 6 224 4 1 1 17 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 222 219 6 224 4 1 1 17 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 223 219 6 224 4 0 0 13 31 -13.489 -5.380 -4.355 -0.109 IL 224 224 5 224 4 1 1 19 36 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 225 225 6 225 3 1 1 16 35 -3.803 -0.125 -6.503 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - U - + - ML 226 225 6 228 3 1 1 15 34 -10.521 -0.003 -9.175 -3.638 -3.539 -0.891 1.720 D 227 225 6 228 3 0 0 10 28 -15.493 -11.006 -0.001 IL 228 228 3 228 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - c - + - ML 229 228 3 231 3 1 1 14 32 -10.521 -0.106 -3.839 0.278 0.419 -2.769 0.383 D 230 228 3 231 3 0 0 10 28 -15.493 -5.313 -0.037 IL 231 231 3 231 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - C - + - ML 232 231 3 234 3 1 1 13 31 -10.809 -3.913 -0.100 -4.310 1.520 -5.346 0.079 D 233 231 3 234 3 0 0 8 27 -15.466 -10.979 -0.001 IL 234 234 3 234 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 51 - a - + - ML 235 234 3 237 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 236 234 3 237 3 0 0 7 25 -15.602 -3.957 -0.096 IL 237 237 3 237 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 52 - C - + - ML 238 237 3 240 2 1 1 1 1 * 0.000 -0.070 1.239 -3.415 -0.753 D 239 237 3 240 2 0 0 0 0 * 0.000 IL 240 240 3 240 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 241 240 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME SerGCT LENG 76 MAXL 147 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Mon Feb 23 12:27:00 2015 COM [1] cmbuild --hand --enone Ser-GCT_model.cm aligntrnadb-Ser-GCT-D_arm4.sto NSEQ 282 EFFN 26.209442 CKSUM 3771917286 STATS LOCAL MSV -8.6550 0.71882 STATS LOCAL VITERBI -8.9794 0.71882 STATS LOCAL FORWARD -3.8330 0.71882 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15893 1.43855 1.67233 1.34287 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 0.00000 * 1 1.70644 4.66677 0.22603 4.47491 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 2 0.04649 5.55994 3.33029 5.15152 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 3 1.21060 3.37879 0.46546 3.21777 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 4 0.12704 5.49637 2.21586 5.09280 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.04115 3.30468 5.62539 0.18601 1.77351 1.09861 0.40547 5 0.24411 3.79176 1.84116 3.34088 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 6 0.03307 5.52542 3.98531 4.60890 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03730 3.41092 5.62539 0.20571 1.68237 1.09861 0.40547 7 2.35931 5.29954 0.11093 5.19909 9 G = - ( 1.38629 1.38629 1.38629 1.38629 2.62966 0.07873 5.62539 1.62235 0.21994 1.09861 0.40547 8 0.23119 2.54881 2.48583 3.10158 19 A = - < 1.38629 1.38629 1.38629 1.38629 0.06215 2.87088 5.62539 0.12275 2.15833 1.09861 0.40547 9 0.35994 2.48791 2.14207 2.28485 21 A = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 10 4.00434 5.51431 0.02880 5.09498 22 G = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 11 0.17259 5.46546 1.91084 5.06290 23 A = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 12 0.07493 5.50696 2.78010 5.09886 24 A = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 13 5.27812 0.04433 5.58336 3.36676 25 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 14 4.76580 3.68322 5.28451 0.03950 26 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 15 5.23891 6.42767 0.01013 5.75918 27 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 16 5.69417 0.01218 6.00671 5.07098 28 C * - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 17 5.75663 5.35810 6.37161 0.00963 29 U * - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 18 0.00819 6.18865 5.73287 5.85491 30 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04308 3.25542 5.62539 0.17750 1.81622 1.09861 0.40547 19 0.05044 3.40493 4.90557 4.75856 32 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02236 3.98971 5.62539 0.35246 1.21387 1.09861 0.40547 20 4.56350 0.79919 5.27562 0.62592 34 U = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 21 5.22904 1.34981 5.25269 0.31455 35 U = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 22 5.60460 0.03086 5.50152 3.78873 36 C = - > 1.38629 1.38629 1.38629 1.38629 0.01799 5.62539 4.25257 1.46634 0.26236 1.09861 0.40547 23 0.85829 2.11896 2.47598 0.98919 37 a = - > 1.38629 1.38629 1.38629 1.38629 0.00731 5.61472 5.61472 1.46634 0.26236 1.78280 0.18412 24 2.26600 2.44786 2.29306 0.34413 38 U = - > 1.38629 1.38629 1.38629 1.38629 0.00731 5.61472 5.61472 1.46634 0.26236 0.40998 1.08965 25 1.80121 1.91970 0.64226 1.81924 39 G + - , 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 26 1.18614 0.71146 2.53192 2.08614 40 c + - , 1.38629 1.38629 1.38629 1.38629 2.62966 5.62539 0.07873 1.46634 0.26236 1.09861 0.40547 27 1.80312 1.30590 1.07725 1.49721 41 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 28 1.79498 1.30840 1.08029 1.49557 42 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 29 1.79134 1.30953 1.08166 1.49483 43 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 30 1.78989 1.30998 1.08222 1.49454 44 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 31 1.78948 1.31011 1.08237 1.49445 45 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 32 1.78958 1.31008 1.08233 1.49447 46 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 33 1.78991 1.30998 1.08221 1.49454 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.58330 0.07853 34 1.80496 2.02260 1.91020 0.58850 48 U + - _ 1.38629 1.38629 1.38629 1.38629 0.05063 3.70165 3.70165 1.46634 0.26236 5.48009 0.00418 35 1.22745 1.35938 2.09962 1.11584 49 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08701 3.70165 2.83612 1.46634 0.26236 3.55547 0.02898 36 2.07722 0.66880 2.65045 1.23176 50 C + - _ 1.38629 1.38629 1.38629 1.38629 0.81072 3.80645 0.62880 1.46634 0.26236 5.46125 0.00426 37 1.13112 1.65303 1.51838 1.32128 51 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.39848 0.09525 38 1.32128 1.00597 2.16635 1.37467 52 c + - _ 1.38629 1.38629 1.38629 1.38629 0.79921 3.79494 0.63898 1.46634 0.26236 5.46343 0.00425 39 1.72169 1.22390 1.16525 1.53568 54 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 40 1.72149 1.22399 1.16533 1.53561 55 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 41 1.72156 1.22395 1.16530 1.53564 56 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 42 1.72216 1.22369 1.16508 1.53582 57 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 43 1.72378 1.22299 1.16448 1.53629 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 44 1.72726 1.22149 1.16320 1.53733 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 45 1.73418 1.21853 1.16067 1.53937 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.10607 2.29621 46 1.47926 0.98636 2.46746 1.15689 61 c + - , 1.38629 1.38629 1.38629 1.38629 1.44261 5.53488 0.27478 1.46634 0.26236 3.29597 0.03774 47 2.30444 1.10687 2.87265 0.66739 62 U + - , 1.38629 1.38629 1.38629 1.38629 0.11312 2.39912 4.12513 0.32445 1.28346 0.00920 4.69367 48 2.33252 0.58344 4.19654 1.10889 64 C + - , 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 49 3.58698 0.13644 5.12721 2.36521 65 C = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 50 2.09016 0.37199 2.43812 2.30615 66 C = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 51 0.70156 2.51184 1.23370 2.02605 67 a = - < 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 52 1.83290 1.69335 2.24129 0.59815 68 U = - < 1.38629 1.38629 1.38629 1.38629 0.03862 5.62539 3.37324 1.46634 0.26236 1.09861 0.40547 53 1.13625 1.74342 0.90093 2.32416 69 g = - < 1.38629 1.38629 1.38629 1.38629 0.03374 3.70955 4.74602 0.28020 1.40907 0.19090 1.74992 54 1.72178 1.04964 3.42216 0.82429 71 u + - _ 1.38629 1.38629 1.38629 1.38629 0.47228 0.98672 5.62057 0.07424 2.63730 0.61861 0.77369 55 2.17439 1.97125 4.23453 0.31122 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 56 0.55763 2.45180 3.13019 1.21205 75 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 57 0.09459 4.36566 3.63342 2.97356 76 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09939 2.44052 4.89375 0.08081 2.55584 1.09861 0.40547 58 0.31592 1.54850 4.21915 3.13251 78 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04563 5.62150 3.19452 1.46634 0.26236 0.67408 0.71258 59 0.52123 1.47307 2.84064 2.13196 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.49506 1.26159 2.23249 0.14386 2.01000 0.93988 0.49540 60 0.71176 1.66819 2.05353 1.64844 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07835 3.40803 3.16403 0.78054 0.61279 0.05594 2.91137 61 1.82217 0.92411 2.13541 1.12935 85 c = - > 1.38629 1.38629 1.38629 1.38629 0.00749 5.59131 5.59131 1.46634 0.26236 0.17755 1.81597 62 0.63755 2.35428 1.51753 1.85025 86 A = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 63 2.19073 1.33013 2.49265 0.61428 87 U = - > 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 64 2.56866 2.75722 0.31739 2.02613 88 G = - > 1.38629 1.38629 1.38629 1.38629 0.14960 1.99992 5.62539 0.05245 2.97406 1.09861 0.40547 65 2.57086 5.22091 0.09322 4.94315 90 G = - > 1.38629 1.38629 1.38629 1.38629 0.04115 3.30468 5.62539 0.18601 1.77351 1.09861 0.40547 66 5.29309 0.10958 5.17035 2.37429 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 67 5.42124 4.03281 5.68036 0.02589 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 68 3.02961 1.61939 3.79625 0.31308 94 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 69 3.23722 1.96925 5.23339 0.20355 95 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02815 3.72356 5.62539 0.27577 1.42289 1.09861 0.40547 70 3.67153 0.49593 3.36297 1.10586 97 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 71 5.33258 2.85365 5.33932 0.06963 98 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 72 4.72423 0.38595 4.49512 1.20345 99 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00724 5.62539 5.62539 1.46634 0.26236 1.09861 0.40547 73 0.21899 3.75808 2.31859 2.59119 100 A + - : 1.38629 1.38629 1.38629 1.38629 2.62966 5.62539 0.07873 1.46634 0.26236 1.09861 0.40547 74 1.13112 1.65303 1.51838 1.32128 101 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 75 1.13112 1.65303 1.51838 1.32128 102 a + - : 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.55444 0.00388 76 1.13112 1.65303 1.51838 1.32128 103 a + - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.04452 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME SerTGA STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:55:44 2015 COM [1] cmbuild --hand --enone Ser-TGA_model.cm aligntRNAdb-Ser-TGA.sto COM [2] cmcalibrate --seed 208 Ser-TGA_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 2834783034 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4244 0.71874 ECMLC 0.65647 -7.27081 2.48786 1600000 726742 0.001651 ECMGC 0.36069 -43.00042 -29.19800 1600000 58098 0.006885 ECMLI 0.66354 -6.96057 2.64600 1600000 703929 0.001705 ECMGI 0.37389 -38.78759 -25.58818 1600000 55640 0.007189 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -13.075 -14.320 -0.004 -8.542 IL 1 1 2 1 4 14 39 99 117 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 40 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 93 - G - + MR 3 2 3 5 5 19 45 97 116 -13.123 -0.023 -12.938 -5.987 -14.042 0.939 -8.507 1.011 -3.936 D 4 2 3 5 5 11 35 95 114 -6.109 -1.464 -3.735 -1.197 -3.161 IR 5 5 3 5 5 14 38 98 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 92 G U = = MP 6 5 3 10 6 21 45 96 115 -14.052 -13.992 -0.001 -12.768 -13.048 -13.443 -10.073 -8.733 -10.268 2.043 -12.409 -13.564 -7.867 -10.311 -9.828 0.857 -10.498 3.329 -7.792 -11.573 -9.698 -8.866 ML 7 5 3 10 6 12 37 95 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 38 94 113 -9.858 -8.587 -2.767 -8.565 -0.256 -6.779 -3.098 -2.839 -3.880 1.878 D 9 5 3 10 6 9 33 92 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 13 37 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 13 38 96 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 91 A U = = MP 12 11 6 16 6 20 43 94 113 -14.056 -13.995 -0.001 -12.771 -13.051 -13.446 -10.076 -8.736 -10.271 3.950 -12.407 -13.564 -7.866 -10.313 -9.831 -5.398 -10.501 -0.988 -7.793 -11.576 -9.697 -8.870 ML 13 11 6 16 6 12 36 93 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 38 93 112 -9.702 -8.431 -0.157 -8.409 -3.543 -6.623 -3.448 1.882 -4.213 -2.570 D 15 11 6 16 6 9 33 90 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 13 37 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 13 37 94 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 90 G C = = MP 18 17 6 22 6 18 41 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.615 -8.649 -12.867 1.022 -13.439 -9.960 -7.932 -12.694 -9.987 3.801 -10.231 -6.498 -8.237 -10.369 -10.294 -11.605 ML 19 17 6 22 6 12 36 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 36 91 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 32 88 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 13 37 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 13 37 92 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 89 A U = = MP 24 23 6 28 6 16 39 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.126 -8.804 -9.488 3.976 -12.377 -13.417 -7.934 -9.427 -9.891 -5.464 -10.548 -2.213 -7.863 -11.597 -9.747 -8.561 ML 25 23 6 28 6 12 35 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 35 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 32 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 12 36 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 36 90 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 88 A U = = MP 30 29 6 34 6 14 37 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.759 -12.435 -13.590 -7.893 -10.336 -9.854 -0.741 -10.524 0.882 -7.817 -11.599 -9.723 -8.892 ML 31 29 6 34 6 11 35 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 35 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 32 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 36 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 12 36 88 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 87 A U = = MP 36 35 6 40 6 12 35 86 105 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.926 -12.434 -13.590 -7.893 -10.336 -9.854 -1.102 -10.524 -1.680 -7.817 -11.599 -9.723 -8.892 ML 37 35 6 40 6 11 34 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 34 86 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 32 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 11 34 86 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 11 34 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 86 G C = = MP 42 41 6 46 4 10 33 84 103 -13.280 -13.487 -1.749 -0.510 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 43 41 6 46 4 10 33 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 33 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 31 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 34 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 34 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 10 33 83 102 -12.446 -0.228 -2.778 -1.099 -5.712 -6.626 1.809 D 49 47 6 50 3 8 31 81 100 -15.100 -2.738 -0.234 IL 50 50 3 50 3 10 33 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - c - + - ML 51 50 3 53 2 9 32 82 101 -13.364 -0.000 0.064 0.500 -1.635 0.285 D 52 50 3 53 2 8 31 81 100 -13.238 -0.000 IL 53 53 3 53 2 9 32 83 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 31 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 43 62 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 43 62 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 43 -0.046 -12.197 -5.013 -12.244 [ MATP 15 ] 10 26 a g = = MP 58 57 1 62 6 2 3 24 43 -14.033 -13.973 -0.001 -12.749 -13.029 -13.424 2.056 -3.128 2.247 -0.931 -2.216 -6.419 0.760 -3.899 -1.364 -1.361 -3.304 -3.023 0.127 -5.709 1.189 -3.738 ML 59 57 1 62 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -10.575 -9.304 -0.843 -9.282 -1.207 -7.495 0.596 -0.823 -0.285 0.141 D 61 57 1 62 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 3 22 41 -14.059 -13.999 -0.006 -12.775 -8.129 -13.450 -10.882 -11.054 -3.028 0.578 -8.686 -10.492 3.372 -9.579 -10.364 -7.103 -10.527 -9.226 1.235 -10.767 0.729 -9.156 ML 65 63 6 68 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -9.484 -8.213 -0.184 -8.192 -3.325 -6.405 0.284 -1.028 -0.094 0.438 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 A U = = MP 70 69 6 74 6 2 3 20 39 -14.073 -14.012 -0.001 -12.789 -13.069 -13.464 -10.094 -1.850 -10.289 3.765 -12.429 -13.584 -7.887 -10.331 -9.849 -1.802 -10.519 -2.108 0.564 -11.594 -9.718 -3.024 ML 71 69 6 74 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 41 -8.148 -6.877 -2.786 -6.855 -0.314 -5.069 -0.815 1.235 -1.587 -0.425 D 73 69 6 74 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 U A = = MP 76 75 6 80 4 2 2 18 37 -13.275 -13.482 -0.015 -6.587 0.180 -8.988 -9.731 0.375 -8.976 -10.836 -2.021 -9.355 1.272 -2.149 -10.024 -2.916 3.349 -10.286 -1.513 -8.373 ML 77 75 6 80 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -6.087 -5.116 -0.486 -2.044 1.468 -1.569 -1.280 -1.044 D 79 75 6 80 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 16 34 -14.176 -0.252 -2.640 1.822 -7.699 -1.899 -2.378 D 83 81 6 84 3 0 0 16 35 -9.171 -4.684 -0.060 IL 84 84 3 84 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - + - ML 85 84 3 87 3 1 1 15 34 -13.923 -0.333 -2.277 0.430 -3.367 1.293 -3.247 D 86 84 3 87 3 0 0 13 32 -13.055 -8.568 -0.004 IL 87 87 3 87 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - + - ML 88 87 3 90 3 1 1 14 33 -13.590 -6.694 -0.014 -0.716 -6.215 -2.354 1.670 D 89 87 3 90 3 0 0 13 31 -14.059 -9.572 -0.002 IL 90 90 3 90 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - a - + - ML 91 90 3 93 3 1 1 17 35 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 92 90 3 93 3 0 0 12 30 -15.602 -0.026 -5.811 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - G - + - ML 94 93 3 96 3 1 1 11 30 -14.166 -0.000 -12.820 -4.436 -10.479 1.982 -9.458 D 95 93 3 96 3 0 0 13 31 -9.829 -0.915 -1.093 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - + - ML 97 96 3 99 3 1 1 10 28 -14.179 -0.122 -3.625 -3.875 -2.881 1.924 -8.843 D 98 96 3 99 3 0 0 12 31 -8.813 -4.326 -0.077 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 14 -5.307 -0.122 -4.161 -2.694 -1.056 -3.556 1.713 D 101 99 3 102 3 0 0 4 12 -12.124 -0.016 -6.516 IL 102 102 3 102 3 1 1 8 15 -3.762 -0.128 -6.462 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 -2.431 -3.594 -4.778 1.886 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 28 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - g - + - ML 109 108 2 111 5 1 1 27 46 -3.448 -0.151 -12.941 -7.031 -14.045 -0.577 -1.833 0.814 0.368 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -6.562 -0.024 -8.241 -10.073 -9.347 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 g u = = MP 112 111 3 116 6 2 2 26 45 -14.067 -14.006 -0.001 -12.783 -13.063 -13.458 -10.087 -3.266 -10.283 2.477 -12.423 -13.566 -7.880 -10.326 -9.843 1.772 -10.512 2.786 -7.805 -11.585 -9.711 -8.881 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 43 -8.869 -7.598 -3.507 -7.576 -0.182 -5.790 -1.634 -1.605 -2.375 1.658 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 U A = = MP 118 117 6 122 6 2 2 24 43 -14.067 -14.006 -0.001 -12.783 -13.063 -13.458 -11.098 -11.380 -10.416 -7.616 -3.574 -10.560 0.266 -9.681 -10.519 -7.588 -10.639 -9.784 3.297 -10.932 2.196 -1.816 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 42 -8.869 -7.598 -0.292 -7.576 -2.710 -5.790 1.751 -2.532 -2.148 -2.091 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.103 -11.360 -10.426 -7.599 -8.783 -10.576 -4.495 -9.695 -10.527 -7.578 -10.650 -9.722 3.857 -10.946 0.313 -2.318 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.907 -8.639 -13.833 -6.072 -13.592 -9.835 -7.937 -13.448 -10.001 3.842 -10.205 0.706 -8.287 -10.290 -10.366 -12.751 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.481 -8.655 -12.536 0.914 -13.366 -10.031 -7.929 -12.414 -9.979 3.806 -10.245 -3.137 -8.212 -10.412 -10.258 -11.239 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 48 67 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 2 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - U - + - ML 166 165 2 168 3 1 2 48 67 -14.190 -0.297 -2.428 -1.708 -1.268 -2.262 1.618 D 167 165 2 168 3 0 0 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - + - ML 169 168 3 171 2 1 1 47 66 -14.546 -0.000 -0.382 -1.718 -0.709 1.212 D 170 168 3 171 2 0 0 46 65 -11.575 -0.000 IL 171 171 3 171 2 1 1 49 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 31 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 29 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 27 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 25 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 23 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 21 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 19 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -13.489 -13.170 -4.609 -0.061 IL 214 214 5 214 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - + - ML 216 215 6 218 3 1 1 14 33 -9.777 -0.006 -8.431 -4.583 -4.177 -5.394 1.956 D 217 215 6 218 3 0 0 9 27 -15.542 -11.055 -0.001 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - + - ML 219 218 3 221 3 1 1 13 32 -9.777 -0.006 -8.431 -4.583 -4.177 -5.394 1.956 D 220 218 3 221 3 0 0 8 26 -15.542 -11.055 -0.001 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - + - ML 222 221 3 224 3 1 1 12 30 -9.777 -2.881 -0.212 -4.583 -4.177 -5.394 1.956 D 223 221 3 224 3 0 0 7 25 -15.542 -11.055 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 29 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - + - ML 231 230 2 233 3 1 1 29 47 -2.595 -0.261 -12.844 -1.729 -2.882 -0.955 1.607 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 28 47 -6.337 -0.021 -9.037 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - A - + - ML 234 233 3 236 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.588 -7.340 -2.038 -0.427 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 85 G C = = MP 237 236 3 241 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 84 G U = = MP 243 242 6 247 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 2.169 -12.435 -13.590 -7.893 -10.336 -9.854 -0.063 -10.524 3.396 -7.817 -11.599 -9.723 -8.892 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 83 G U = = MP 249 248 6 253 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 1.705 -12.435 -13.590 -7.893 -10.336 -9.854 -0.476 -10.524 3.585 -7.817 -11.599 -9.723 -8.892 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 82 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.856 -8.641 -13.627 -2.106 -13.568 -9.855 -7.936 -13.297 -9.998 3.965 -10.209 -2.844 -8.279 -10.302 -10.355 -12.493 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 81 G C = = MP 261 260 6 265 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - U - + - ML 267 266 6 269 3 1 1 16 34 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 268 266 6 269 3 0 0 19 37 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - C - + - ML 273 272 3 275 3 1 1 13 32 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 274 272 3 275 3 0 0 17 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - G - + - ML 276 275 3 278 3 1 1 12 30 -14.190 -0.000 -12.844 -1.069 -10.213 1.816 -9.330 D 277 275 3 278 3 0 0 16 34 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 78 - A - + - ML 279 278 3 281 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 280 278 3 281 3 0 0 15 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 79 - U - + - ML 282 281 3 284 3 1 1 9 27 -14.190 -0.000 -12.844 -1.377 -0.839 -4.600 1.592 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 80 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -4.179 -8.495 -9.656 1.978 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME SerTGA LENG 90 MAXL 176 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:55:44 2015 COM [1] cmbuild --hand --enone Ser-TGA_model.cm aligntRNAdb-Ser-TGA.sto NSEQ 282 EFFN 3.360626 CKSUM 2834783034 STATS LOCAL MSV -9.0938 0.71874 STATS LOCAL VITERBI -9.7944 0.71874 STATS LOCAL FORWARD -3.4061 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44624 1.57860 1.32641 1.22808 1.38629 1.38629 1.38629 1.38629 0.04368 4.16887 3.60213 1.46634 0.26236 0.00000 * 1 1.30038 2.98657 0.48506 2.78954 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03181 4.15701 4.15701 1.46634 0.26236 1.23833 0.34230 2 0.24009 3.41907 1.96124 3.21839 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03176 4.15842 4.15842 1.46634 0.26236 0.78675 0.60756 3 2.01336 3.17826 0.25142 3.05538 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 4 0.21087 3.46958 2.10651 3.28805 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 5 0.45372 3.08297 1.33737 2.87565 5 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 6 0.27863 3.32327 1.81333 3.12280 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 7 2.86719 3.66587 0.11618 3.60278 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.68661 4.16887 0.73136 1.46634 0.26236 1.09861 0.40547 8 1.52464 1.85686 2.12385 0.68010 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.11863 3.54192 2.49009 1.46634 0.26236 1.79463 0.18175 9 1.26993 1.40481 1.87209 1.13965 9 u + - , 1.38629 1.38629 1.38629 1.38629 0.07138 3.61557 3.17029 1.46634 0.26236 0.09530 2.39796 10 1.25944 1.49648 1.60269 1.23472 10 u = - < 1.38629 1.38629 1.38629 1.38629 0.03210 4.14807 4.14807 1.46634 0.26236 0.89486 0.52537 11 1.96369 0.86682 1.95228 1.21259 11 c = - < 1.38629 1.38629 1.38629 1.38629 0.03411 4.16016 4.02107 1.46634 0.26236 0.82474 0.57687 12 0.72090 2.19133 1.41674 1.83625 12 a = - < 1.38629 1.38629 1.38629 1.38629 0.03150 4.16656 4.16656 1.46634 0.26236 1.14716 0.38205 13 1.60512 1.53926 1.52268 1.00384 13 u = - < 1.38629 1.38629 1.38629 1.38629 0.03846 4.16656 3.80664 1.46634 0.26236 1.00807 0.45401 14 0.34228 2.65928 2.22124 2.19485 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.14761 4.16215 2.10654 1.46634 0.26236 1.23350 0.34428 15 1.13984 2.30343 0.84048 1.90575 15 g + - _ 1.38629 1.38629 1.38629 1.38629 0.17791 4.05000 1.92715 1.46634 0.26236 2.32677 0.10271 16 1.56069 2.01662 2.14809 0.61582 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.91715 3.91288 0.54411 1.46634 0.26236 2.86789 0.05850 17 1.13112 1.65303 1.51838 1.32128 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.06142 2.82058 18 2.90838 3.91006 0.11095 3.49278 18 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03179 4.15769 4.15769 1.46634 0.26236 0.98069 0.47009 19 2.36662 2.97192 0.22823 2.82932 19 G + - _ 1.38629 1.38629 1.38629 1.38629 0.08851 4.16385 2.67142 1.46634 0.26236 1.20122 0.35786 20 1.96824 1.83613 2.48519 0.48199 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.08875 3.42242 2.95082 0.81568 0.58400 0.35003 1.21965 21 2.12894 2.26256 2.72522 0.34049 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03254 4.13451 4.13451 1.46634 0.26236 0.48752 0.95230 22 1.04363 1.82286 1.32910 1.50711 23 a = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 23 2.02404 1.58159 2.00235 0.64015 24 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 24 1.50448 2.12231 0.71008 1.79270 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 25 1.32762 1.78552 1.08736 1.46933 26 g = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 26 1.39441 1.92706 1.18983 1.19676 27 g + - , 1.38629 1.38629 1.38629 1.38629 0.10186 2.57231 3.88809 0.36528 1.18418 1.09861 0.40547 27 1.22407 2.67821 0.58724 2.50807 29 G = - < 1.38629 1.38629 1.38629 1.38629 0.03159 4.16385 4.16385 1.46634 0.26236 1.20122 0.35786 28 2.33085 1.39978 2.12680 0.62191 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.03159 4.16385 4.16385 1.46634 0.26236 0.92043 0.50807 29 3.08420 2.08092 2.86199 0.25843 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 30 2.53542 3.36569 0.16605 3.23829 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 31 2.03286 3.18230 0.24803 3.05304 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 32 3.36924 0.12080 3.93367 2.81676 34 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 33 3.02590 2.92115 3.55686 0.14031 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 34 3.02590 2.92115 3.55686 0.14031 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 35 3.13350 4.06348 0.09126 3.63205 37 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 36 0.09732 3.67467 3.35850 3.42369 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 37 0.09732 3.67467 3.35850 3.42369 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 38 0.09732 3.67467 3.35850 3.42369 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 39 3.27191 0.28990 3.00265 1.80743 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 40 3.44363 0.24148 3.19009 1.95603 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 41 0.32660 3.02910 1.77815 2.79168 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 42 0.95152 2.29855 0.95077 2.06359 44 g = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 43 2.73455 1.11462 2.47962 0.64767 45 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 44 1.79580 1.85646 2.27791 0.55290 46 U + - , 1.38629 1.38629 1.38629 1.38629 0.16756 4.16887 1.97468 1.46634 0.26236 1.09861 0.40547 45 1.39275 1.83187 1.79657 0.85419 47 u + - , 1.38629 1.38629 1.38629 1.38629 1.04151 4.03724 0.46294 1.46634 0.26236 2.39541 0.09556 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 47 1.80332 1.30584 1.07717 1.49724 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 48 1.80113 1.30651 1.07799 1.49681 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 49 1.80020 1.30679 1.07834 1.49662 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 50 1.79986 1.30690 1.07846 1.49655 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 51 1.79982 1.30691 1.07848 1.49654 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 52 1.79992 1.30688 1.07844 1.49656 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.81537 0.06175 53 1.33586 1.65304 1.74706 0.99071 55 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08803 3.16687 3.16687 1.46634 0.26236 3.78213 0.02304 54 1.33586 1.65304 1.74706 0.99071 56 u + - _ 1.38629 1.38629 1.38629 1.38629 0.08803 3.16687 3.16687 1.46634 0.26236 3.78213 0.02304 55 1.33586 1.65304 1.74706 0.99071 57 u + - _ 1.38629 1.38629 1.38629 1.38629 0.17114 3.16687 2.16141 1.46634 0.26236 3.78213 0.02304 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 57 1.73113 1.21983 1.16179 1.53847 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 58 1.73099 1.21989 1.16184 1.53843 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 59 1.73092 1.21992 1.16186 1.53841 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 60 1.73098 1.21990 1.16184 1.53843 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 61 1.73128 1.21977 1.16173 1.53851 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 62 1.73201 1.21946 1.16146 1.53873 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.82084 0.02215 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04481 3.12769 64 1.74551 2.05583 1.99193 0.57799 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.15180 2.07651 4.16887 0.23080 1.57940 1.09861 0.40547 65 0.57946 2.28417 2.07785 1.54768 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 66 2.87767 3.68043 0.11450 3.62258 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 67 1.23021 3.12568 0.49514 2.91182 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 68 1.38651 3.23003 0.41408 3.00473 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 69 2.68483 3.60592 0.13399 3.50641 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 70 2.87024 3.67010 0.11569 3.60851 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 71 3.02590 2.92115 3.55686 0.14031 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 72 3.02590 2.92115 3.55686 0.14031 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 73 3.36924 0.12080 3.93367 2.81676 76 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 74 1.92824 3.22330 0.27919 2.84079 77 G + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 75 0.09732 3.67467 3.35850 3.42369 78 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 76 1.78021 1.75528 2.46553 0.55587 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 77 2.59954 2.66013 3.20202 0.20448 80 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 78 3.78464 0.13890 3.51444 2.56129 81 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 79 3.69131 0.16326 3.44293 2.36746 82 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 80 3.20352 1.83754 3.01695 0.28605 83 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 81 3.11657 1.72298 2.91499 0.32441 84 U = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 82 3.79115 0.13852 3.51757 2.56250 85 C = - > 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 83 3.77379 0.13955 3.50920 2.55926 86 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 84 3.32216 2.15750 3.11719 0.21812 87 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 85 3.07981 1.86407 2.87523 0.29761 88 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 86 3.48096 2.49519 3.26267 0.16434 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 87 3.26186 0.29121 2.99420 1.80637 90 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 88 3.39605 2.38696 3.20812 0.18134 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03143 4.16887 4.16887 1.46634 0.26236 1.09861 0.40547 89 2.97723 1.48173 2.77360 0.41645 92 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03288 4.16887 4.08212 1.46634 0.26236 1.09861 0.40547 90 0.88715 2.55964 0.94231 2.11104 93 a + - : 1.38629 1.38629 1.38629 1.38629 0.01586 4.15186 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Thr STATES 289 NODES 76 CLEN 90 W 111 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:07 2015 COM [1] cmbuild --hand --enone Thr_model.cm aligntRNAdb-Thr.sto COM [2] cmcalibrate --seed 208 Thr_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 797174568 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.2659 0.71867 ECMLC 0.73086 -6.27139 2.36108 1600000 659481 0.001820 ECMGC 0.32052 -43.93631 -29.12490 1600000 46113 0.008674 ECMLI 0.74491 -5.52406 2.83444 1600000 607083 0.001977 ECMGI 0.33929 -38.25519 -24.39890 1600000 44037 0.009083 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 111 157 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 37 113 158 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 39 113 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 111 - U - + MR 3 2 3 5 5 22 46 112 157 -13.126 -0.001 -12.941 -13.153 -14.045 0.770 -2.450 -4.717 1.053 D 4 2 3 5 5 14 34 110 156 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 37 112 157 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 110 G C = = MP 6 5 3 10 6 23 45 111 156 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.800 -4.086 -13.423 -1.640 -13.539 -9.877 -7.935 -13.143 -9.996 3.924 -10.214 -1.217 -8.270 -10.316 -10.341 -12.248 ML 7 5 3 10 6 15 36 109 154 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 35 108 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 32 105 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 37 110 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 110 155 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 109 U A = = MP 12 11 6 16 6 22 43 109 154 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 0.288 -10.571 0.895 -9.692 -10.530 -7.599 -10.650 -9.795 3.672 -3.215 -4.297 -9.332 ML 13 11 6 16 6 15 35 107 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 35 106 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 31 103 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 36 108 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 37 108 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 108 C G = = MP 18 17 6 22 6 22 42 107 152 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -4.183 -3.366 3.941 -9.692 -10.530 -7.600 -10.650 -9.796 -1.103 -10.943 -6.480 -9.332 ML 19 17 6 22 6 15 35 105 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 35 104 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 31 101 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 36 106 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 36 106 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 107 U A = = MP 24 23 6 28 6 20 40 105 150 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -1.940 -10.571 2.572 -9.692 -10.530 -7.599 -10.650 -9.795 3.279 -10.943 -3.864 -9.332 ML 25 23 6 28 6 15 35 103 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 34 102 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 31 99 145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 36 104 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 36 104 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 106 U A = = MP 30 29 6 34 6 18 38 103 148 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 0.422 -1.999 -4.588 -1.663 0.736 -3.296 -0.557 -3.413 -9.113 -4.864 -9.531 -6.843 3.492 -9.441 -2.763 -3.917 ML 31 29 6 34 6 14 34 101 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 34 101 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 31 98 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 35 102 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 35 102 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 105 u u = = MP 36 35 6 40 6 16 36 101 146 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -6.290 -3.591 -6.456 1.292 -3.462 -2.290 -1.349 0.758 -6.503 -0.180 -7.061 -3.465 1.411 0.665 -4.280 2.530 ML 37 35 6 40 6 14 33 99 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 33 99 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 30 97 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 34 100 146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 34 100 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 104 G C = = MP 42 41 6 46 4 14 34 99 144 -13.280 -13.487 -0.001 -11.901 -11.537 -8.652 -12.667 0.458 -13.395 -9.999 -7.928 -12.528 -3.249 3.844 -10.238 -2.734 -8.221 -10.392 -10.271 -11.384 ML 43 41 6 46 4 13 32 98 144 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 31 97 143 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 30 96 142 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 33 99 145 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 33 98 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 12 32 97 142 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 30 95 141 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 32 97 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 11 31 96 141 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 10 30 95 140 -8.445 -0.004 IL 53 53 3 53 2 12 31 96 142 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 30 95 140 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.341 -8.660 -12.228 0.630 -13.282 -10.115 -7.924 -12.146 -9.971 3.761 -10.260 -0.182 -8.180 -10.462 -10.214 -10.906 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 U A = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 A U = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.182 -8.901 -10.308 3.858 -11.234 -12.746 -6.842 -10.248 -9.916 -5.551 -10.537 -6.203 0.535 -11.509 -8.762 -8.935 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 u u = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -2.249 -11.391 -10.427 -7.627 -0.285 -10.571 -1.160 -9.692 -10.530 -7.599 -10.650 -9.795 2.838 -3.688 -3.082 2.839 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 15 34 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 33 -14.190 -0.370 -2.145 1.347 -1.358 -2.059 -0.276 D 86 84 3 87 3 0 0 17 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - u - + - ML 88 87 3 90 3 1 1 13 32 -13.821 -1.546 -0.605 -1.346 0.715 -7.061 0.969 D 89 87 3 90 3 0 0 12 30 -13.472 -8.985 -0.003 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - c - + - ML 91 90 3 93 3 1 1 13 31 -12.276 -4.124 -0.086 -0.562 0.819 -5.286 0.616 D 92 90 3 93 3 0 0 12 30 -15.167 -0.494 -1.785 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 12 30 -13.294 -0.001 -11.948 0.929 -1.048 -0.902 0.107 D 95 93 3 96 3 0 0 10 28 -14.501 -1.792 -0.492 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - A - + - ML 97 96 3 99 3 1 1 10 29 -13.614 -1.998 -0.416 1.089 -0.060 -2.183 -0.530 D 98 96 3 99 3 0 0 9 27 -14.012 -9.525 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - u - + - ML 100 99 3 102 3 1 1 6 11 -3.041 -0.188 -10.273 -1.045 0.671 -4.663 0.914 D 101 99 3 102 3 0 0 5 10 -3.427 -0.143 -9.737 IL 102 102 3 102 3 1 1 6 10 -5.612 -0.034 -8.312 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.989 -10.073 -5.104 -9.473 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - c - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.701 0.727 -2.590 -0.855 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 C G = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.579 -8.292 -8.557 -0.341 0.747 -9.365 3.066 -2.132 -8.424 -1.090 -8.922 -5.869 2.047 -8.752 -1.804 -7.146 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.098 -11.373 -10.421 -2.621 -4.758 -10.568 2.139 -9.688 -10.523 -7.572 -10.645 -9.760 3.474 -10.936 -6.476 -1.939 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.767 -0.745 -13.313 -0.002 -13.522 -9.891 -7.935 -13.056 -9.994 3.846 -10.217 -6.527 -8.264 -10.325 -10.333 -12.117 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.847 -8.641 -13.594 -1.661 -13.563 -9.858 -7.936 -13.272 -9.998 3.962 -10.210 -3.618 -8.278 -10.304 -10.353 -12.453 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 1.002 -2.359 -0.024 -9.692 -10.530 -7.599 -10.650 -9.795 3.439 -10.943 0.969 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.389 1.874 -9.845 -1.594 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 63 109 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 65 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - + - ML 166 165 2 168 3 1 4 63 109 -14.190 -0.085 -4.137 1.783 -1.255 -4.081 -3.640 D 167 165 2 168 3 0 3 61 107 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 64 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - + - ML 169 168 3 171 2 1 4 62 108 -14.759 -0.000 1.747 -4.215 -0.949 -3.816 D 170 168 3 171 2 0 3 61 107 -10.197 -0.001 IL 171 171 3 171 2 1 4 62 108 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 61 107 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -4.280 -0.077 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - A - + - ML 216 215 6 218 3 1 1 15 33 -10.067 -0.005 -8.721 1.978 -5.942 -5.350 -5.580 D 217 215 6 218 3 0 0 9 28 -15.526 -11.039 -0.001 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - A - + - ML 219 218 3 221 3 1 1 13 32 -10.067 -0.005 -8.721 1.978 -5.942 -5.350 -5.580 D 220 218 3 221 3 0 0 8 27 -15.526 -11.039 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - A - + - ML 222 221 3 224 3 1 1 12 30 -10.067 -0.005 -8.721 1.978 -5.942 -5.350 -5.580 D 223 221 3 224 3 0 0 7 25 -15.526 -11.039 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -4.785 -6.403 1.975 -5.522 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 53 99 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 55 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 3 53 99 -3.650 -0.120 -12.844 1.903 -8.517 -2.150 -4.959 D 232 230 2 233 3 0 0 51 97 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 53 99 -5.332 -0.042 -8.033 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - u - + - ML 234 233 3 236 5 1 3 52 98 -13.126 -0.001 -12.941 -13.153 -14.045 0.497 -0.751 -1.786 0.769 D 235 233 3 236 5 0 0 50 96 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 52 98 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 103 G C = = MP 237 236 3 241 6 2 4 51 97 -14.078 -5.178 -0.041 -12.794 -13.073 -13.468 -12.010 -0.323 -14.330 -6.112 -13.641 -9.799 -7.938 -13.787 -10.005 3.923 -10.197 -6.568 -8.302 -10.266 -10.388 -13.418 ML 238 236 3 241 6 1 1 48 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 49 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 45 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 50 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 48 94 -5.028 -1.911 -1.184 -1.950 -7.813 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 101 G C = = MP 243 242 6 247 6 2 4 49 95 -14.045 -13.984 -0.006 -12.761 -8.094 -13.435 -11.774 -1.233 -13.408 2.226 -13.475 -2.969 -7.873 -13.151 -9.960 3.426 -10.173 -6.498 -8.212 -10.264 -10.277 -12.265 ML 244 242 6 247 6 1 1 45 91 -9.058 -9.404 -4.118 -0.107 -9.254 -6.783 1.895 -3.697 -3.210 -3.372 MR 245 242 6 247 6 1 1 47 93 -8.977 -7.706 -3.615 -7.684 -0.168 -5.898 -2.134 1.715 -2.965 -1.469 D 246 242 6 247 6 0 0 44 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 48 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 48 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 100 A U = = MP 249 248 6 253 6 2 2 47 93 -4.158 -13.979 -0.138 -8.026 -7.122 -5.361 -2.879 -2.900 -10.255 3.739 -12.396 -13.550 -7.854 -10.298 -9.815 1.081 -10.485 -2.037 -7.778 -11.560 -9.684 -8.853 ML 250 248 6 253 6 1 1 43 89 -9.058 -9.404 -4.118 -0.107 -9.254 -6.783 -2.893 -4.271 1.900 -3.630 MR 251 248 6 253 6 1 1 46 91 -9.373 -8.102 -1.728 -8.080 -0.564 -6.294 0.103 0.979 -1.711 -0.623 D 252 248 6 253 6 0 0 43 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 46 92 -1.461 -2.025 -1.545 -4.437 -10.063 -9.723 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 44 90 -4.742 -2.830 -0.313 -6.421 -7.527 0.000 0.000 0.000 0.000 [ MATP 66 ] 73 98 G C = = MP 255 254 6 259 6 2 2 45 91 -13.954 -13.893 -0.562 -5.391 -2.716 -2.773 -11.183 -1.281 -12.006 0.968 -12.872 -9.849 -2.141 -12.068 -3.840 3.735 -10.070 -6.280 -7.818 -10.165 -9.803 -10.785 ML 256 254 6 259 6 1 1 42 88 -10.512 -10.858 -5.573 -0.038 -10.708 -8.238 0.880 -2.435 -2.652 0.860 MR 257 254 6 259 6 1 1 44 90 -9.679 -8.408 -0.971 -1.886 -2.286 -6.600 0.168 1.029 -1.932 -0.802 D 258 254 6 259 6 0 0 42 88 -12.807 -11.506 -7.303 -7.985 -2.618 -0.275 IL 259 259 5 259 6 1 1 43 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 43 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 74 97 a c = = MP 261 260 6 265 4 2 2 40 86 -5.196 -5.658 -0.446 -2.192 -2.021 2.539 -3.778 2.336 -8.555 -4.225 -2.617 -8.068 -3.625 2.029 -8.070 -1.611 -3.887 -7.284 -5.632 -6.355 ML 262 260 6 265 4 1 1 41 87 -3.066 -4.784 -0.565 -2.572 0.134 0.553 0.259 -2.064 MR 263 260 6 265 4 1 1 47 93 -10.760 -1.218 -4.544 -0.925 -3.059 1.717 -1.659 -1.857 D 264 260 6 265 4 0 0 30 76 -10.840 -10.522 -1.299 -0.755 IL 265 265 5 265 4 1 1 40 86 -1.350 -6.366 -0.753 -8.852 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 48 94 -0.580 -2.421 -2.794 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - A - + - ML 267 266 6 269 3 1 1 29 55 -2.673 -0.246 -12.213 1.165 -1.420 -1.883 0.153 D 268 266 6 269 3 0 0 27 54 -14.119 -0.354 -2.201 IL 269 269 3 269 3 1 1 29 56 -1.444 -0.665 -8.990 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - u - + - ML 270 269 3 272 3 1 1 27 54 -14.075 -0.005 -8.211 0.587 -1.020 -1.390 0.699 D 271 269 3 272 3 0 0 26 53 -11.927 -0.068 -4.448 IL 272 272 3 272 3 1 1 28 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - C - + - ML 273 272 3 275 3 1 1 26 53 -14.182 -0.040 -5.190 0.191 1.110 -5.234 -0.572 D 274 272 3 275 3 0 0 25 52 -8.455 -0.221 -2.846 IL 275 275 3 275 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - ML 276 275 3 278 3 1 1 25 52 -3.548 -0.206 -4.396 1.122 -0.209 -1.608 -0.668 D 277 275 3 278 3 0 0 24 50 -10.479 -0.344 -2.242 IL 278 278 3 278 3 1 1 25 52 -2.821 -0.265 -5.245 0.000 0.000 0.000 0.000 [ MATL 72 ] 86 - A - + - ML 279 278 3 281 3 1 1 24 51 -14.111 -0.078 -4.258 1.361 -0.016 -4.994 -1.284 D 280 278 3 281 3 0 0 19 45 -11.422 -4.300 -0.076 IL 281 281 3 281 3 1 1 25 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 87 - a - + - ML 282 281 3 284 3 1 1 23 50 -2.905 -0.534 -2.509 0.731 0.233 -1.301 -0.398 D 283 281 3 284 3 0 0 13 39 -12.314 -7.827 -0.007 IL 284 284 3 284 3 1 1 25 52 -0.993 -1.011 -9.575 0.000 0.000 0.000 0.000 [ MATL 74 ] 92 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.402 0.920 -4.411 0.384 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Thr LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:08 2015 COM [1] cmbuild --hand --enone Thr_model.cm aligntRNAdb-Thr.sto NSEQ 282 EFFN 6.295258 CKSUM 797174568 STATS LOCAL MSV -8.5616 0.71867 STATS LOCAL VITERBI -9.7963 0.71867 STATS LOCAL FORWARD -3.4760 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23952 1.45499 1.49528 1.37482 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 0.00000 * 1 2.87022 4.04774 0.09840 3.93399 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 2 2.79451 1.32872 2.59436 0.51192 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 3 4.48611 0.06948 4.36350 3.14374 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 4 3.10733 0.94345 2.88360 0.67322 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 5 1.63977 1.49092 1.80036 0.87810 5 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 6 1.56404 1.52880 1.68782 0.94420 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 7 2.23417 3.56250 0.18401 3.42275 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 8 3.81125 3.59794 4.35732 0.06434 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 9 0.04245 4.47836 4.11050 4.28225 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 10 2.14256 3.54353 0.19820 3.39524 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 11 4.62615 3.29944 4.53579 0.05913 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 12 0.27485 3.06540 2.48856 2.20141 12 A = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 13 1.96198 1.56573 1.92564 0.68379 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 14 0.04245 4.47836 4.11050 4.28225 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 15 0.68426 1.96580 2.15426 1.42919 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.21577 4.50014 1.69840 1.46634 0.26236 1.09861 0.40547 16 1.78630 1.09156 2.61950 0.85829 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.68132 4.31156 0.73264 1.46634 0.26236 2.91633 0.05565 17 1.42908 1.23965 2.13478 1.04210 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.65633 3.68191 0.78510 1.46634 0.26236 0.37197 1.16916 18 0.97607 1.78338 1.78934 1.24455 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03487 4.06655 4.06655 1.46634 0.26236 1.22929 0.34602 19 0.87524 1.54499 2.07363 1.40979 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.77586 4.21209 0.64459 1.46634 0.26236 1.39895 0.28350 20 1.45392 1.33842 2.05442 0.97838 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09267 2.77350 3.64734 0.69413 0.69217 0.03728 3.30794 21 0.05541 4.28272 3.73930 4.11467 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 22 1.09650 2.08166 1.45534 1.17792 23 a = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 23 2.29072 2.82182 2.88327 0.24417 24 U = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 24 0.06912 4.70332 3.11762 4.30808 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 25 3.59421 0.26319 3.34661 1.77950 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 26 1.03526 1.14932 2.25754 1.49876 27 a + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 27 2.11798 0.81522 2.00336 1.19633 28 c = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 28 2.71882 1.15075 2.55814 0.61581 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 29 2.22374 3.64963 0.17902 3.51629 30 G = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 30 3.06676 4.30503 0.07768 4.22222 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 31 2.52966 1.33624 2.39385 0.56880 32 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 32 3.47855 0.16496 4.06903 2.26218 33 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 33 3.81125 3.59794 4.35732 0.06434 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 34 3.81125 3.59794 4.35732 0.06434 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 35 3.86480 4.86680 0.04209 4.37767 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 36 3.81125 3.59794 4.35732 0.06434 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 37 0.04245 4.47836 4.11050 4.28225 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 38 0.04245 4.47836 4.11050 4.28225 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 39 0.62685 2.48737 1.25406 2.33043 40 A = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 40 4.36047 0.09541 4.16785 2.76874 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 41 3.73725 0.18240 3.47693 2.18917 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 42 0.69222 2.73442 1.06890 2.39452 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 43 1.21717 2.16760 0.82306 1.89447 44 g = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 44 0.28500 2.22802 2.82448 2.51444 45 A + - , 1.38629 1.38629 1.38629 1.38629 0.06758 4.50014 2.91430 1.46634 0.26236 1.09861 0.40547 45 0.31335 2.87504 1.98023 2.59626 46 A + - , 1.38629 1.38629 1.38629 1.38629 1.46032 4.45605 0.27941 1.46634 0.26236 1.92911 0.15698 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 47 1.80302 1.30593 1.07728 1.49719 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 48 1.80067 1.30665 1.07816 1.49671 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 49 1.79962 1.30697 1.07855 1.49650 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 50 1.79922 1.30710 1.07870 1.49642 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 51 1.79912 1.30713 1.07874 1.49640 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 52 1.79917 1.30711 1.07872 1.49641 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.76369 0.06513 53 0.67147 2.00927 1.83245 1.63509 54 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08175 3.23786 3.23786 1.46634 0.26236 4.21288 0.01491 54 0.67147 2.00927 1.83245 1.63509 55 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08175 3.23786 3.23786 1.46634 0.26236 4.21288 0.01491 55 0.67147 2.00927 1.83245 1.63509 56 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08175 3.23786 3.23786 1.46634 0.26236 4.21288 0.01491 56 1.40872 2.03186 0.84203 1.64187 57 g + - _ 1.38629 1.38629 1.38629 1.38629 0.24212 3.23786 1.73845 1.46634 0.26236 4.21288 0.01491 57 1.73043 1.22013 1.16204 1.53826 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 58 1.73034 1.22017 1.16208 1.53824 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 59 1.73033 1.22018 1.16208 1.53823 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 60 1.73046 1.22012 1.16203 1.53827 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 61 1.73087 1.21994 1.16188 1.53839 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 62 1.73177 1.21956 1.16155 1.53866 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02856 3.56996 64 0.14828 3.54888 2.64058 3.27716 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.08637 2.63610 4.50014 0.28562 1.39250 1.09861 0.40547 65 1.12766 1.73051 2.04551 0.99506 67 u + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 66 2.73869 4.15115 0.10271 4.06217 68 G = - < 1.38629 1.38629 1.38629 1.38629 0.02899 4.50014 4.04746 1.46634 0.26236 1.09861 0.40547 67 1.42810 2.74423 0.47040 2.64248 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02538 4.49376 4.27739 1.46634 0.26236 1.27327 0.32838 68 0.41688 3.27151 1.36130 3.06558 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.09311 2.92146 3.35084 0.67431 0.71234 1.12233 0.39381 69 1.76660 2.79340 0.35347 2.72375 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.27669 4.46970 1.46854 1.46634 0.26236 1.09570 0.40692 70 1.11064 2.00028 0.97877 1.83521 74 g = - < 1.38629 1.38629 1.38629 1.38629 0.23950 3.22435 1.75331 0.85132 0.55661 1.02298 0.44554 71 0.84708 1.88075 2.01052 1.25548 77 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14593 2.11553 4.18583 0.58789 0.81080 0.30814 1.32731 72 1.09136 1.80106 1.94588 1.03211 81 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.44024 4.25446 1.46634 0.26236 0.30711 1.33018 73 1.30736 0.87518 2.59967 1.43388 82 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04397 4.49589 3.44635 1.46634 0.26236 0.89505 0.52524 74 0.82394 1.59925 2.03110 1.47814 83 a + - _ 1.38629 1.38629 1.38629 1.38629 0.12918 2.60271 3.05515 0.37996 1.15166 0.66003 0.72740 75 0.64292 1.54822 2.50984 1.71292 86 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06417 4.46048 2.98377 1.46634 0.26236 1.87192 0.16703 76 1.02712 1.41268 1.93740 1.36887 87 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29166 2.19911 1.95140 0.77929 0.61384 2.29044 0.10672 77 1.49448 1.02027 2.42259 1.11948 92 c + - _ 1.38629 1.38629 1.38629 1.38629 0.29261 2.41831 1.80416 1.15784 0.37712 0.38040 1.15072 78 2.00542 0.86404 1.83059 1.26011 97 c = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.31181 4.06277 1.46634 0.26236 0.30861 1.32601 79 2.94316 0.38744 2.62231 1.63028 98 C = - > 1.38629 1.38629 1.38629 1.38629 0.02330 4.46415 4.46415 1.46634 0.26236 0.66551 0.72157 80 3.13759 1.51792 3.06117 0.37018 100 U = - > 1.38629 1.38629 1.38629 1.38629 0.02272 4.48892 4.48892 1.46634 0.26236 0.69190 0.69439 81 2.90406 0.50420 2.60031 1.32065 101 C = - > 1.38629 1.38629 1.38629 1.38629 0.03295 3.84871 4.50014 0.84039 0.56483 1.09861 0.40547 82 4.21997 0.09379 3.99493 2.87490 103 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 83 3.52976 0.21948 3.38574 2.01069 104 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 84 1.48810 1.67134 1.47956 1.02592 105 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 85 0.87261 1.92674 1.42998 1.62351 106 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 86 0.71328 3.05496 0.90106 2.86997 107 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 87 3.32850 4.38593 0.06367 4.31343 108 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 88 0.50020 2.71031 1.38296 2.57389 109 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 89 4.14258 0.12754 3.90972 2.47916 110 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 90 1.02443 2.11797 2.41877 0.84005 111 u + - : 1.38629 1.38629 1.38629 1.38629 0.01130 4.48897 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Trp STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:17 2015 COM [1] cmbuild --hand --enone Trp_model.cm aligntRNAdb-Trp.sto COM [2] cmcalibrate --seed 208 Trp_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 1110105779 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.4924 0.71875 ECMLC 0.65785 -7.17161 2.21932 1600000 578345 0.002075 ECMGC 0.30322 -47.18415 -30.80049 1600000 57484 0.006958 ECMLI 0.69063 -6.23215 2.63597 1600000 548371 0.002188 ECMGI 0.33614 -40.93101 -26.33929 1600000 53981 0.007410 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 36 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 38 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 102 - G - + MR 3 2 3 5 5 21 43 98 117 -13.126 -0.001 -12.941 -13.153 -14.045 -3.585 -10.490 1.969 -9.473 D 4 2 3 5 5 12 32 97 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 36 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 101 A U = = MP 6 5 3 10 6 21 43 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 7 5 3 10 6 14 34 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 34 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 30 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 35 97 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 35 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 100 G C = = MP 12 11 6 16 6 21 41 95 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.598 -8.650 -12.821 1.080 -13.429 -9.969 -7.931 -12.656 -9.986 3.793 -10.233 -6.495 -8.234 -10.374 -10.289 -11.554 ML 13 11 6 16 6 14 34 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 33 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 29 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 35 95 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 35 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 99 A U = = MP 18 17 6 22 6 20 39 93 112 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.108 -1.514 -10.306 3.312 -12.440 -13.400 -7.888 -10.349 -9.855 2.492 -10.519 -3.690 -7.818 -11.572 -9.725 -8.905 ML 19 17 6 22 6 14 33 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 33 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 29 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 34 93 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 35 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 98 A U = = MP 24 23 6 28 6 20 37 91 110 -4.663 -14.017 -0.059 -12.794 -13.073 -13.468 -10.115 -1.451 -10.315 3.232 -12.443 -13.283 -7.885 -10.358 -9.855 2.614 -10.516 -3.320 -7.818 -11.553 -9.725 -8.914 ML 25 23 6 28 6 14 33 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 32 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 29 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 36 90 109 -6.294 -6.557 -0.046 -8.212 -8.988 -8.649 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 34 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 97 G C = = MP 30 29 6 34 6 18 35 89 108 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.075 -0.521 -10.259 2.665 -12.331 -13.058 -7.743 -2.445 -9.833 3.100 -10.485 -2.417 -7.704 -11.418 -9.597 -8.872 ML 31 29 6 34 6 13 32 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 32 88 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 28 86 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 33 89 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 33 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 96 U A = = MP 36 35 6 40 6 16 33 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.065 -11.310 -10.404 -2.048 -8.767 -10.563 0.975 -9.676 -10.500 -2.921 -10.630 -9.638 3.755 -10.914 -2.753 -9.301 ML 37 35 6 40 6 13 31 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 30 86 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 28 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 14 32 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 32 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 95 U A = = MP 42 41 6 46 4 14 31 85 104 -13.280 -13.487 -0.001 -11.901 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 43 41 6 46 4 12 30 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 29 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 28 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 13 31 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 30 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 12 29 83 102 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 10 28 82 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 30 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - + - ML 51 50 3 53 2 11 28 82 101 -4.305 -0.075 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 10 27 81 99 -8.445 -0.004 IL 53 53 3 53 2 11 28 82 100 -5.849 -0.025 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 27 81 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 43 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 43 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 43 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 12 29 G C = = MP 58 57 1 62 6 2 3 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.027 -8.636 -14.427 -6.118 -13.644 -9.794 -7.936 -13.848 -10.006 3.980 -2.475 -6.571 -8.304 -10.263 -10.389 -13.560 ML 59 57 1 62 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 28 G C = = MP 64 63 6 68 6 2 3 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.043 -1.475 -14.526 -6.124 -13.658 -9.788 -7.938 -13.911 -10.006 3.923 -10.195 -6.574 -8.307 -1.202 -10.395 -13.707 ML 65 63 6 68 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 27 U A = = MP 70 69 6 74 6 2 3 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -1.327 -10.411 -10.401 0.823 1.343 -10.829 -4.757 -9.793 -10.377 -6.868 -10.626 -8.060 3.489 -11.045 -6.744 -9.239 ML 71 69 6 74 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 26 U G = = MP 76 75 6 80 4 2 3 18 37 -13.280 -13.487 -0.001 -11.901 -11.108 -11.383 -10.427 -7.620 -8.779 -10.572 -0.766 -9.693 -10.529 -7.594 -2.754 -9.775 -5.511 -10.944 3.928 -9.332 ML 77 75 6 80 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 16 34 -14.190 -0.004 -8.461 1.891 -2.161 -7.702 -4.014 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 15 33 -14.186 -0.959 -1.042 1.627 -2.023 -1.954 -1.299 D 86 84 3 87 3 0 0 16 35 -7.695 -3.208 -0.173 IL 87 87 3 87 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - A - + - ML 88 87 3 90 3 1 1 14 33 -13.227 -2.566 -0.267 1.083 -0.254 -5.976 0.038 D 89 87 3 90 3 0 0 12 31 -14.575 -10.088 -0.001 IL 90 90 3 90 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 14 33 -10.665 -2.199 -0.355 -0.337 0.602 -3.243 0.665 D 92 90 3 93 3 0 0 12 30 -15.480 -0.156 -3.286 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 12 30 -13.938 -0.000 -12.592 1.452 -0.838 -2.173 -1.049 D 95 93 3 96 3 0 0 11 30 -12.983 -0.933 -1.070 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - c - + - ML 97 96 3 99 3 1 1 11 29 -14.076 -1.033 -0.968 0.351 0.829 -3.284 -0.242 D 98 96 3 99 3 0 0 11 29 -11.921 -7.434 -0.009 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 10 20 -2.114 -0.379 -11.698 -2.394 0.725 -6.366 1.101 D 101 99 3 102 3 0 0 9 18 -3.393 -0.147 -9.137 IL 102 102 3 102 3 1 1 10 19 -2.787 -0.229 -9.167 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.795 -8.197 -1.112 -3.956 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 47 A U = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -0.403 -10.294 3.841 -12.432 -13.588 -7.890 -1.403 -9.854 -0.983 -10.524 -6.045 -7.816 -11.599 -9.721 -8.892 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 46 G C = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.968 -1.319 -10.092 1.224 -11.701 -10.910 -6.860 -10.334 -9.675 3.702 -10.161 -4.098 -7.007 -3.475 -8.841 -3.746 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 a c = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.004 -12.794 -8.734 -13.468 -10.113 2.595 -10.313 2.182 -12.445 -13.352 -7.892 -10.355 -9.856 2.430 -10.519 -6.051 -7.822 -11.569 -9.730 -8.911 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 G C = = MP 130 129 6 134 6 2 2 20 39 -14.075 -14.014 -0.001 -12.790 -13.070 -13.465 -11.943 -1.996 -14.002 -2.624 -13.609 -9.818 -7.934 -13.567 -9.999 3.960 -10.199 -6.555 -8.290 -10.277 -10.372 -12.971 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 41 -7.842 -6.571 -0.675 -6.549 -1.683 -4.763 -0.472 0.968 -1.213 -0.165 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 C G = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 48 67 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - + - ML 166 165 2 168 3 1 4 48 67 -14.190 -0.000 -12.844 1.740 -1.966 -7.424 -1.327 D 167 165 2 168 3 0 3 47 66 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - + - ML 169 168 3 171 2 1 3 47 66 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 170 168 3 171 2 0 2 46 65 -8.445 -0.004 IL 171 171 3 171 2 1 4 48 67 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 46 65 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 50 67 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 66 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 65 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 64 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 54 63 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 55 62 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 56 61 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -3.318 -0.153 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - G - + - ML 216 215 6 218 3 1 1 14 33 -10.952 -0.003 -9.606 -5.651 -7.374 1.986 -6.403 D 217 215 6 218 3 0 0 9 28 -15.450 -10.963 -0.001 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - A - + - ML 219 218 3 221 3 1 1 13 31 -10.952 -0.003 -9.606 1.239 -4.080 -4.385 0.616 D 220 218 3 221 3 0 0 8 27 -15.450 -10.963 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - A - + - ML 222 221 3 224 3 1 1 11 29 -10.952 -0.003 -9.606 1.989 -7.042 -6.376 -6.547 D 223 221 3 224 3 0 0 7 25 -15.450 -10.963 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.989 -7.042 -6.376 -6.547 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 28 45 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - G - + - ML 231 230 2 233 3 1 3 28 45 -4.636 -0.059 -12.844 -2.321 -10.435 1.925 -9.441 D 232 230 2 233 3 0 0 26 43 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 28 45 -4.439 -0.079 -7.139 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - C - + - ML 234 233 3 236 5 1 3 26 44 -13.126 -0.060 -12.941 -4.636 -14.045 -1.462 1.148 -7.409 0.501 D 235 233 3 236 5 0 0 26 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 71 94 A U = = MP 237 236 3 241 6 2 4 25 43 -14.020 -5.200 -0.040 -12.736 -13.015 -13.410 -11.020 -10.887 -5.982 3.993 -11.489 -11.535 -10.126 -5.803 -11.262 -7.430 -11.314 -6.284 -10.275 -11.539 -10.657 -5.985 ML 238 236 3 241 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 23 39 -10.921 -9.650 -5.559 -0.096 -4.762 -7.842 -4.573 -4.169 -5.384 1.955 D 240 236 3 241 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 24 42 -4.961 -0.073 -8.473 -6.640 -7.746 0.000 0.000 0.000 0.000 [ MATP 64 ] 72 92 A U = = MP 243 242 6 247 6 2 3 23 41 -14.020 -13.959 -0.031 -12.736 -5.594 -13.410 -10.040 -8.700 -10.235 3.675 -12.375 -13.527 -7.833 -10.277 -9.795 1.625 -10.465 -2.977 -7.758 -11.539 -9.664 -8.833 ML 244 242 6 247 6 1 1 21 37 -10.374 -10.720 -5.434 -0.042 -10.570 -8.099 -5.049 1.961 -5.569 -4.140 MR 245 242 6 247 6 1 1 23 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 21 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 73 91 G C = = MP 249 248 6 253 6 2 2 21 39 -13.990 -4.911 -0.117 -12.706 -6.321 -4.979 -10.824 -2.188 -11.346 1.677 -12.708 -10.204 -7.571 -11.415 -9.819 3.598 -10.163 -6.216 -1.150 -10.382 -9.738 -10.039 ML 250 248 6 253 6 1 1 19 36 -10.374 -10.720 -5.434 -5.129 -10.570 -0.080 -4.573 -4.169 -5.384 1.955 MR 251 248 6 253 6 1 1 19 35 -10.017 -8.746 -4.655 -8.724 -3.858 -0.175 -3.327 -3.039 -4.112 1.896 D 252 248 6 253 6 0 0 19 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 22 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 20 38 -5.180 -0.768 -8.691 -1.401 -7.965 0.000 0.000 0.000 0.000 [ MATP 66 ] 74 89 U A = = MP 255 254 6 259 6 2 2 19 37 -13.903 -13.842 -0.639 -12.619 -4.798 -1.637 -10.792 -10.998 -10.169 -7.163 -2.559 -10.353 0.865 -9.451 -10.254 -1.034 -10.403 -9.237 3.668 -10.660 -0.720 -2.391 ML 256 254 6 259 6 1 1 21 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 19 35 -10.327 -9.056 -4.965 -9.034 -0.239 -3.109 -0.219 -1.585 0.660 0.295 D 258 254 6 259 6 0 0 16 33 -14.640 -13.338 -9.135 -9.817 -9.835 -0.006 IL 259 259 5 259 6 1 1 21 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 20 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 75 88 g c = = MP 261 260 6 265 4 2 2 18 35 -12.445 -6.081 -1.150 -0.904 -2.144 -0.369 -7.087 2.679 -0.673 -2.959 -0.785 -7.777 -7.525 2.782 -7.771 -3.546 -2.147 -6.942 -5.290 -6.053 ML 262 260 6 265 4 1 1 21 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 18 34 -9.363 -2.811 -3.090 -0.437 0.269 -0.352 -2.308 0.856 D 264 260 6 265 4 0 0 16 33 -12.122 -11.803 -1.419 -0.677 IL 265 265 5 265 4 1 1 22 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 17 34 -3.373 -0.932 -1.398 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - a - + - ML 267 266 6 269 3 1 1 16 34 -4.270 -0.085 -7.470 0.711 -0.789 -2.257 0.655 D 268 266 6 269 3 0 0 14 32 -14.847 -0.824 -1.201 IL 269 269 3 269 3 1 1 16 34 -3.675 -0.137 -6.375 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - U - + - ML 270 269 3 272 3 1 1 15 33 -13.760 -0.148 -3.357 -0.020 -2.517 -1.633 1.332 D 271 269 3 272 3 0 0 14 32 -13.661 -0.079 -4.236 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - c - + - ML 273 272 3 275 3 1 1 13 31 -14.062 -0.000 -12.716 0.828 0.926 -3.708 -2.012 D 274 272 3 275 3 0 0 13 31 -12.079 -0.123 -3.616 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - A - + - ML 276 275 3 278 3 1 1 12 29 -4.889 -0.097 -5.006 1.471 -1.905 -1.050 -1.067 D 277 275 3 278 3 0 0 11 29 -8.555 -0.205 -2.947 IL 278 278 3 278 3 1 1 12 29 -4.212 -0.093 -6.912 0.000 0.000 0.000 0.000 [ MATL 72 ] 82 - A - + - ML 279 278 3 281 3 1 1 11 28 -14.145 -0.153 -3.309 1.665 -1.040 -4.588 -1.728 D 280 278 3 281 3 0 0 11 30 -10.654 -6.167 -0.021 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 83 - u - + - ML 282 281 3 284 3 1 1 10 20 -3.418 -0.543 -2.184 0.376 -0.469 -1.215 0.631 D 283 281 3 284 3 0 0 6 16 -12.664 -4.324 -0.074 IL 284 284 3 284 3 1 1 10 21 -2.603 -0.265 -8.288 0.000 0.000 0.000 0.000 [ MATL 74 ] 86 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.302 -0.049 -3.908 1.357 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Trp LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:17 2015 COM [1] cmbuild --hand --enone Trp_model.cm aligntRNAdb-Trp.sto NSEQ 282 EFFN 4.083527 CKSUM 1110105779 STATS LOCAL MSV -9.0616 0.71875 STATS LOCAL VITERBI -10.0572 0.71875 STATS LOCAL FORWARD -3.4159 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19939 1.49773 1.47575 1.40089 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 0.00000 * 1 0.14997 3.64944 2.47588 3.53444 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 2 2.02318 3.33874 0.23332 3.20938 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 3 0.89663 2.72859 0.79900 2.56438 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 4 0.95263 2.71182 0.75561 2.54930 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.05763 3.17037 4.26767 0.57120 0.83205 1.09861 0.40547 5 1.25620 2.40279 0.64756 2.28789 6 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 6 2.66887 1.40307 2.49323 0.50719 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 7 3.82521 2.59034 3.66770 0.13050 8 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 8 3.26806 3.12589 3.80459 0.11009 9 U + - , 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 9 0.07503 3.92310 3.58727 3.69563 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.06524 3.01305 4.26767 0.49702 0.93737 1.09861 0.40547 10 2.86129 3.65083 0.11801 3.57025 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 11 2.31643 3.08940 0.22897 2.80518 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 12 1.74664 1.36914 1.84622 0.88314 14 u = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 13 3.39941 1.74221 3.09207 0.29294 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 14 0.23427 2.57407 2.87810 2.57197 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03037 4.26767 4.14169 1.46634 0.26236 1.09861 0.40547 15 0.53356 2.13296 2.13002 1.73632 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.45550 4.26579 1.04462 1.46634 0.26236 1.14239 0.38427 16 0.96476 1.58671 2.08544 1.23761 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.67602 3.85362 0.75469 1.46634 0.26236 3.30291 0.03747 17 1.27729 1.44237 1.84908 1.11639 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.23127 3.25768 1.78380 1.46634 0.26236 0.14692 1.99043 18 0.69170 1.81605 2.06845 1.55957 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03206 4.14916 4.14916 1.46634 0.26236 0.74859 0.64062 19 1.21369 1.14580 2.20488 1.29219 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.41989 4.21319 1.11449 1.46634 0.26236 1.64254 0.21504 20 1.68527 1.23571 2.27108 0.86566 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.16690 2.02258 3.84407 0.44540 1.02323 0.07511 2.62612 21 0.07503 3.92310 3.58727 3.69563 25 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 22 2.43866 3.39381 0.17886 3.14848 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 23 0.87940 2.01678 1.36511 1.62693 27 a = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 24 3.18815 0.24516 2.90407 2.10890 28 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 25 3.72343 0.14811 3.34510 2.54775 29 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 26 0.30744 2.89882 2.04214 2.52784 30 A + - , 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 27 0.25841 2.95135 2.10928 2.91642 31 A = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 28 1.61016 2.51822 0.47265 2.34137 32 G = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 29 0.85458 2.76796 0.82781 2.59368 33 g = - < 1.38629 1.38629 1.38629 1.38629 0.03006 4.26767 4.16061 1.46634 0.26236 1.09861 0.40547 30 2.67775 3.69361 0.12937 3.58452 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02847 4.26608 4.26608 1.46634 0.26236 1.02852 0.44244 31 3.92804 0.11596 3.78245 2.70241 35 C = - < 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 32 3.65565 0.09179 4.19832 3.06111 36 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 33 3.26806 3.12589 3.80459 0.11009 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 34 3.26806 3.12589 3.80459 0.11009 38 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 35 3.65565 0.09179 4.19832 3.06111 39 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 36 0.07503 3.92310 3.58727 3.69563 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 37 0.07503 3.92310 3.58727 3.69563 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 38 0.07503 3.92310 3.58727 3.69563 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 39 2.98211 3.94257 0.09967 3.69765 43 G = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 40 3.76780 0.14690 3.52977 2.47446 44 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 41 2.83272 0.56968 2.57055 1.20748 45 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 42 2.63781 0.52931 2.32716 1.41923 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 43 3.14469 2.19088 2.89019 0.23631 47 U = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 44 0.41212 2.22238 2.57473 1.87581 48 A + - , 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 45 0.07503 3.92310 3.58727 3.69563 49 A + - , 1.38629 1.38629 1.38629 1.38629 1.27194 4.26767 0.34857 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 47 1.80321 1.30587 1.07721 1.49722 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 48 1.80097 1.30656 1.07805 1.49677 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 49 1.79999 1.30686 1.07841 1.49658 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 50 1.79963 1.30697 1.07855 1.49650 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 51 1.79957 1.30699 1.07857 1.49649 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 52 1.79965 1.30696 1.07854 1.49651 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.17665 0.12038 53 1.47418 2.11162 0.75624 1.71168 57 g + - _ 1.38629 1.38629 1.38629 1.38629 0.07714 3.29354 3.29354 1.46634 0.26236 3.85898 0.02132 54 0.98671 1.79229 1.82090 1.20818 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.07714 3.29354 3.29354 1.46634 0.26236 3.85898 0.02132 55 0.61284 2.07528 1.89961 1.69803 59 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07714 3.29354 3.29354 1.46634 0.26236 3.85898 0.02132 56 0.61284 2.07528 1.89961 1.69803 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.29781 3.29354 1.51214 1.46634 0.26236 3.85898 0.02132 57 1.73088 1.21994 1.16188 1.53839 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 58 1.73076 1.21999 1.16192 1.53836 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 59 1.73071 1.22001 1.16194 1.53834 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 60 1.73080 1.21998 1.16191 1.53837 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 61 1.73113 1.21983 1.16178 1.53847 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 62 1.73192 1.21949 1.16150 1.53870 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.95805 0.01929 63 1.73350 1.21882 1.16092 1.53917 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03895 3.26490 64 2.56451 3.78939 0.14261 3.40104 68 G + - , 1.38629 1.38629 1.38629 1.38629 0.05763 3.17037 4.26767 0.57120 0.83205 1.09861 0.40547 65 1.78495 0.87944 2.59010 1.07246 70 c + - , 1.38629 1.38629 1.38629 1.38629 0.05763 4.26767 3.17037 1.46634 0.26236 1.09861 0.40547 66 0.15806 3.59590 2.42753 3.48973 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02926 4.23930 4.23930 1.46634 0.26236 0.51135 0.91550 67 0.54927 2.99351 1.15854 2.83746 72 A = - < 1.38629 1.38629 1.38629 1.38629 0.04297 4.26767 3.57383 1.46634 0.26236 1.09861 0.40547 68 1.61012 2.63671 0.45273 2.37893 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.10129 4.25354 2.49966 1.46634 0.26236 1.38664 0.28757 69 2.30704 1.34068 1.99716 0.68705 74 U = - < 1.38629 1.38629 1.38629 1.38629 0.32133 4.18322 1.34874 1.46634 0.26236 2.17229 0.12094 70 1.38988 1.69491 1.01391 1.58727 75 g = - < 1.38629 1.38629 1.38629 1.38629 0.41587 3.90309 1.13927 1.46634 0.26236 1.07718 0.41636 71 1.11795 1.66460 1.93742 1.07966 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07812 3.01932 3.63787 0.79133 0.60375 0.60902 0.78501 72 1.34915 1.93621 1.99896 0.77476 78 u + - _ 1.38629 1.38629 1.38629 1.38629 0.10040 4.06993 2.54539 1.46634 0.26236 0.18239 1.79140 73 0.99553 1.13031 2.25900 1.59413 79 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03025 4.20659 4.20659 1.46634 0.26236 0.38349 1.14407 74 0.65604 2.05134 1.88111 1.60887 80 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07590 3.28357 3.33540 0.63306 0.75708 0.93055 0.50143 75 0.48858 1.96913 2.42546 1.84208 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.10326 4.24600 2.47946 1.46634 0.26236 1.51061 0.24945 76 1.18340 1.62763 1.87064 1.06902 83 u + - _ 1.38629 1.38629 1.38629 1.38629 0.27403 2.55494 1.82020 0.46173 0.99478 1.97628 0.14918 77 1.65244 1.49291 2.29468 0.72793 86 u + - _ 1.38629 1.38629 1.38629 1.38629 0.40052 3.43068 1.21179 0.88549 0.53190 0.34874 1.22273 78 1.75154 1.10707 1.54789 1.26135 88 c = - > 1.38629 1.38629 1.38629 1.38629 0.03900 3.95666 3.95666 1.46634 0.26236 0.34901 1.22208 79 0.81035 2.15198 1.17312 2.04298 89 a = - > 1.38629 1.38629 1.38629 1.38629 0.05505 3.25439 4.20248 0.65082 0.73735 0.76056 0.62999 80 2.59589 0.51346 2.44258 1.42686 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.02926 4.23930 4.23930 1.46634 0.26236 1.60865 0.22334 81 3.01189 1.31762 2.80969 0.47352 92 U = - > 1.38629 1.38629 1.38629 1.38629 0.04905 3.39771 4.23930 0.71375 0.67296 0.51135 0.91550 82 3.50681 2.74091 3.30883 0.14048 94 U = - > 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 83 0.14828 3.86227 2.42442 3.56639 95 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 84 0.57646 2.65423 1.26574 2.45648 96 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 85 2.54174 0.71027 2.24919 1.12616 97 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 86 2.79443 0.82999 2.51794 0.86235 98 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 87 2.80901 0.87588 2.53479 0.81202 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 88 3.43905 0.26664 3.16671 1.83377 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 89 3.77725 2.85173 3.46974 0.11851 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02843 4.26767 4.26767 1.46634 0.26236 1.09861 0.40547 90 2.95368 4.06099 0.10023 3.65010 102 G + - : 1.38629 1.38629 1.38629 1.38629 0.01432 4.25356 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Tyr STATES 289 NODES 76 CLEN 90 W 97 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:29 2015 COM [1] cmbuild --hand --enone Tyr_model.cm aligntRNAdb-Tyr.sto COM [2] cmcalibrate --seed 208 Tyr_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3141745492 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.8300 0.71876 ECMLC 0.70535 -6.90224 1.66420 1600000 505032 0.002376 ECMGC 0.35170 -47.23962 -33.34253 1600000 53053 0.007540 ECMLI 0.63232 -7.82202 1.66579 1600000 483781 0.002480 ECMGI 0.36618 -43.31075 -30.12237 1600000 50053 0.007992 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 97 116 -13.075 -14.320 -0.152 -3.323 IL 1 1 2 1 4 19 42 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 44 99 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 96 - A - + MR 3 2 3 5 5 21 45 97 116 -12.975 -0.001 -12.791 -13.003 -13.894 1.999 -10.040 -9.275 -9.381 D 4 2 3 5 5 17 38 96 115 -10.416 -0.017 -8.043 -9.474 -7.468 IR 5 5 3 5 5 16 36 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 95 G C = = MP 6 5 3 10 6 22 45 96 115 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.835 -8.641 -13.551 -1.554 -13.557 -9.863 -7.936 -13.240 -9.998 3.958 -10.211 -3.335 -8.276 -10.307 -10.350 -12.400 ML 7 5 3 10 6 14 35 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 14 35 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 11 31 92 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 15 36 96 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 15 36 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 G C = = MP 12 11 6 16 6 22 43 94 113 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.580 -8.651 -12.777 -0.751 -13.422 -9.977 -7.932 -12.620 -9.985 3.837 -10.234 0.140 -8.231 -10.379 -10.285 -11.505 ML 13 11 6 16 6 14 34 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 14 34 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 11 31 90 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 15 35 94 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 15 36 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 U A = = MP 18 17 6 22 6 21 41 92 111 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -1.923 -9.692 -10.530 -7.599 -10.650 -9.794 3.694 -10.943 1.470 -9.332 ML 19 17 6 22 6 14 34 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 14 34 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 31 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 15 35 92 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 15 35 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 A U = = MP 24 23 6 28 6 19 39 90 109 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.294 3.967 -12.418 -13.580 -7.879 -10.336 -9.855 -1.613 -10.524 -6.046 -7.812 -11.598 -9.711 -8.893 ML 25 23 6 28 6 14 34 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 34 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 30 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 14 35 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 15 35 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 A U = = MP 30 29 6 34 6 17 37 88 107 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.864 -12.435 -13.590 -7.893 -10.336 -9.854 -0.508 -10.524 -0.483 -7.817 -11.599 -9.723 -8.892 ML 31 29 6 34 6 13 33 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 13 33 87 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 30 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 14 34 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 14 34 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 90 A U = = MP 36 35 6 40 6 15 35 86 105 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.760 -10.294 3.781 -12.411 -13.572 -7.872 -10.335 -9.855 -0.226 -10.524 0.027 -3.188 -11.597 -2.480 -3.674 ML 37 35 6 40 6 13 33 85 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 12 32 85 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 30 83 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 33 86 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 33 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 89 A U = = MP 42 41 6 46 4 13 33 84 103 -13.280 -5.448 -0.034 -11.901 -10.099 -8.759 -10.294 3.879 -12.435 -13.590 -7.893 -10.336 -9.854 -0.868 -10.524 -0.479 -7.817 -11.599 -9.723 -8.892 ML 43 41 6 46 4 12 32 84 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 11 31 84 103 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 10 30 83 102 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 32 85 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 32 83 103 -3.753 -0.129 -6.453 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 31 82 101 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 10 29 81 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 31 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - + - ML 51 50 3 53 2 10 30 81 100 -14.843 -0.000 -8.727 -10.497 1.998 -9.485 D 52 50 3 53 2 9 29 80 99 -8.445 -0.004 IL 53 53 3 53 2 11 30 82 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 29 80 99 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.678 -8.647 -13.042 -2.012 -13.475 -9.930 -7.934 -12.839 -9.990 3.850 -10.225 0.396 -8.249 -10.350 -10.311 -11.803 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 C G = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.947 -9.692 -10.530 -7.600 -10.650 -9.795 -2.005 -10.943 -1.678 -9.332 ML 65 63 6 68 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 U A = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.426 -7.627 -2.289 -10.571 1.568 -9.692 -10.530 -7.599 -10.650 -9.795 3.401 -10.943 1.169 -9.332 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 G A = = MP 76 75 6 80 4 2 2 18 36 -13.280 -13.487 -0.001 -11.901 -10.107 -8.773 -10.296 -5.086 -12.245 -13.471 -7.735 -10.327 3.836 -5.434 -0.124 -0.442 -7.750 -11.589 -9.583 -8.897 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 1 16 34 -14.190 -0.175 -3.127 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - + - ML 85 84 3 87 3 1 1 15 33 -14.015 -0.955 -1.047 -3.513 -3.857 1.596 -0.286 D 86 84 3 87 3 0 0 13 31 -12.498 -8.011 -0.006 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - u - + - ML 88 87 3 90 3 1 1 14 33 -13.061 -3.646 -0.120 0.676 -1.842 -2.937 0.995 D 89 87 3 90 3 0 0 12 31 -14.731 -10.244 -0.001 IL 90 90 3 90 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 15 34 -9.422 -2.526 -0.278 -4.047 -3.686 -4.845 1.936 D 92 90 3 93 3 0 0 12 30 -15.557 -2.442 -0.293 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - G - + - ML 94 93 3 96 3 1 1 14 32 -11.745 -0.001 -10.400 0.192 -6.207 1.499 -5.837 D 95 93 3 96 3 0 0 10 28 -15.319 -6.121 -0.021 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - A - + - ML 97 96 3 99 3 1 1 12 31 -11.832 -1.501 -0.629 1.020 -6.541 0.963 -6.389 D 98 96 3 99 3 0 0 9 27 -15.299 -10.812 -0.001 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - + - ML 100 99 3 102 3 1 1 7 12 -0.611 -1.542 -8.988 -5.450 -4.969 -6.292 1.975 D 101 99 3 102 3 0 0 5 10 -5.921 -0.026 -9.900 IL 102 102 3 102 3 1 1 6 12 -4.968 -0.054 -7.668 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 0.485 -3.586 -1.830 1.161 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.920 -9.521 -2.237 -9.190 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -1.437 -11.383 -10.427 -7.620 -1.162 -10.572 -4.491 -9.693 -3.445 -7.594 -10.650 -9.776 3.896 -10.944 -2.796 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.104 -11.364 -10.427 -7.603 -8.782 -10.576 -4.495 -9.695 -10.527 -7.582 -10.650 -9.732 3.955 -10.945 -1.218 -9.324 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.751 -12.435 -13.590 -7.893 -10.336 -9.854 0.888 -10.524 -0.590 -7.817 -11.599 -9.723 -8.892 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.601 -4.407 -12.831 0.588 -13.431 -9.965 -7.929 -12.667 -9.986 3.841 -10.231 -3.180 -8.233 -10.371 -10.288 -11.567 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -10.099 -8.759 -10.294 3.859 -12.435 -13.590 -7.893 -10.336 -9.854 -0.457 -10.524 -0.435 -7.817 -11.599 -9.723 -8.892 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.301 1.983 -9.703 -4.529 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - + - ML 166 165 2 168 3 1 5 49 68 -14.190 -0.005 -8.098 1.344 -2.167 0.065 -2.368 D 167 165 2 168 3 0 3 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - + - ML 169 168 3 171 2 1 4 48 67 -14.838 -0.000 -0.647 -0.994 1.229 -0.956 D 170 168 3 171 2 0 3 47 66 -8.643 -0.004 IL 171 171 3 171 2 1 4 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 29 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 4 29 47 -4.238 -0.079 -12.844 1.999 -10.184 -9.419 -9.524 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 29 47 -4.793 -0.061 -7.493 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - C - + - ML 234 233 3 236 5 1 4 28 46 -13.126 -0.001 -12.941 -13.153 -14.045 -2.802 1.520 -3.836 -0.122 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 87 A U = = MP 237 236 3 241 6 2 4 27 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.589 -12.435 -13.583 -7.892 -10.337 -9.854 1.794 -10.524 -1.054 -7.817 -11.598 -9.723 -8.893 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 86 G C = = MP 243 242 6 247 6 2 4 25 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.408 -4.695 -12.369 0.505 -13.311 -10.067 -7.915 -12.276 -9.974 3.771 -10.250 -0.185 -8.186 -10.430 -10.223 -11.063 ML 244 242 6 247 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 85 A U = = MP 249 248 6 253 6 2 4 23 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.098 -1.871 -10.293 3.380 -12.432 -13.564 -7.888 -10.336 -9.853 1.943 -10.522 0.541 -7.814 -11.592 -9.719 -8.892 ML 250 248 6 253 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 71 84 G C = = MP 255 254 6 259 6 2 2 21 39 -14.078 -14.017 -0.083 -8.480 -7.562 -4.384 -11.607 -8.649 -12.845 -0.068 -13.436 -9.964 -7.932 -12.677 -9.986 3.866 -10.232 -1.148 -8.236 -10.371 -10.292 -11.581 ML 256 254 6 259 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 72 83 G C = = MP 261 260 6 265 4 2 2 18 37 -13.195 -13.402 -0.485 -1.809 -10.664 -1.216 -11.053 0.653 -12.159 -9.877 -2.135 -11.344 -9.720 3.722 -10.005 -0.835 -7.278 -9.981 -9.168 -9.880 ML 262 260 6 265 4 1 1 23 41 -4.627 -4.809 -1.375 -0.893 -0.501 -1.511 1.268 -0.905 MR 263 260 6 265 4 1 1 22 40 -6.469 -5.498 -0.358 -2.426 -1.327 1.490 -2.133 -0.826 D 264 260 6 265 4 0 0 19 37 -9.196 -8.878 -3.614 -0.129 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - U - + - ML 267 266 6 269 3 1 1 15 33 -4.287 -0.076 -12.296 -1.200 -1.782 -1.287 1.518 D 268 266 6 269 3 0 0 14 32 -13.955 -0.031 -5.562 IL 269 269 3 269 3 1 1 15 33 -4.265 -0.089 -6.965 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 32 -14.182 -0.000 -12.836 -1.416 -2.380 -1.057 1.562 D 271 269 3 272 3 0 0 16 34 -8.490 -0.215 -2.882 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - u - + - ML 273 272 3 275 3 1 1 13 31 -14.190 -0.015 -6.583 0.490 -1.519 -1.612 0.941 D 274 272 3 275 3 0 0 16 35 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - a - + - ML 276 275 3 278 3 1 1 11 29 -3.919 -0.161 -4.663 0.935 -2.917 0.726 -1.734 D 277 275 3 278 3 0 0 10 28 -9.197 -0.128 -3.588 IL 278 278 3 278 3 1 1 11 29 -5.070 -0.050 -7.770 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.133 -0.172 -3.153 1.691 -2.147 -1.478 -2.417 D 280 278 3 281 3 0 0 11 29 -10.978 -6.491 -0.017 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - G - + - ML 282 281 3 284 3 1 1 7 14 -4.812 -0.209 -3.329 -0.152 -1.256 1.013 -0.592 D 283 281 3 284 3 0 0 4 11 -12.855 -3.982 -0.095 IL 284 284 3 284 3 1 1 7 14 -4.090 -0.101 -6.790 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.677 0.068 -2.282 1.283 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Tyr LENG 90 MAXL 174 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:30 2015 COM [1] cmbuild --hand --enone Tyr_model.cm aligntRNAdb-Tyr.sto NSEQ 282 EFFN 3.610199 CKSUM 3141745492 STATS LOCAL MSV -9.1222 0.71876 STATS LOCAL VITERBI -9.7200 0.71876 STATS LOCAL FORWARD -3.5589 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23585 1.61140 1.39430 1.34018 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 0.00000 * 1 2.65713 3.62056 0.13566 3.50856 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 2 2.33312 3.29722 0.19413 3.15899 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 3 2.89609 1.68628 2.69001 0.36864 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 4 0.21557 3.40917 2.09842 3.26485 4 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 5 0.33135 3.29335 1.61548 3.07640 5 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 6 0.55020 2.57283 1.38075 2.34910 6 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 7 0.30848 3.34466 1.68085 3.12465 7 A = - ( 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 8 3.11410 2.99544 3.64725 0.12840 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 9 3.22007 4.15892 0.08307 3.72406 9 G + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 10 2.49197 3.40220 0.16712 3.27391 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 11 3.48058 0.20825 3.28973 2.12074 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 12 2.52438 1.23415 2.31095 0.63556 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 13 2.11048 2.59554 0.32983 2.46309 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 14 0.08847 3.76540 3.44171 3.52340 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11326 4.19774 2.38541 1.46634 0.26236 1.09861 0.40547 15 1.85552 2.38335 0.59803 1.60201 15 G + - _ 1.38629 1.38629 1.38629 1.38629 0.42371 4.11759 1.11138 1.46634 0.26236 2.09491 0.13134 16 1.14265 1.77841 1.99052 0.97951 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.68132 3.74243 0.75427 1.46634 0.26236 3.30818 0.03727 17 1.30465 1.64576 1.71271 1.03425 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.15492 3.15065 2.29569 1.46634 0.26236 1.64209 0.21514 18 1.19149 2.08203 0.96134 1.66507 18 g + - _ 1.38629 1.38629 1.38629 1.38629 0.06914 3.39920 3.39920 1.46634 0.26236 3.26895 0.03879 19 0.98352 2.04238 1.20229 1.63076 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.28914 3.41598 1.52212 1.46634 0.26236 3.14180 0.04417 20 1.42488 1.68494 1.84499 0.87712 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.17182 2.13168 3.23831 0.56654 0.83814 0.04647 3.09207 21 1.17272 2.03351 2.00898 0.85455 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 22 0.54962 2.19283 2.08959 1.67401 23 A = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 23 0.83461 2.48161 0.96297 2.29668 24 a = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 24 2.45482 3.43616 0.17163 3.22785 25 G = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 25 3.45446 0.23769 3.21011 1.96899 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 26 0.18848 3.21886 2.52556 2.96104 27 A + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 27 3.10884 2.54275 2.99015 0.19066 28 U = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 28 3.59302 2.29742 3.39450 0.17625 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 29 0.48538 3.03853 1.27829 2.84526 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 30 2.13051 3.27275 0.22304 3.14111 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 31 0.33691 3.28714 1.59791 3.07152 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 32 3.35376 0.12855 3.91663 2.72156 33 C + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 33 3.11410 2.99544 3.64725 0.12840 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 34 3.22007 4.15892 0.08307 3.72406 35 G * - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 35 3.11410 2.99544 3.64725 0.12840 36 U * - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 36 0.08847 3.76540 3.44171 3.52340 37 A * - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 37 0.08847 3.76540 3.44171 3.52340 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 38 0.08847 3.76540 3.44171 3.52340 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 39 3.27683 1.98755 3.07978 0.24942 40 U = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 40 3.36246 0.25997 3.09556 1.90362 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 41 3.06212 1.55201 2.83564 0.38169 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 42 0.21158 3.56207 2.06367 3.34306 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 43 0.20529 3.17361 2.39060 2.95339 44 A = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 44 0.72715 2.11824 1.48508 1.77202 45 a + - , 1.38629 1.38629 1.38629 1.38629 0.03296 4.19774 4.05144 1.46634 0.26236 1.09861 0.40547 45 1.45084 1.89685 0.90433 1.55698 46 g + - , 1.38629 1.38629 1.38629 1.38629 1.19964 4.19537 0.38034 1.46634 0.26236 1.14979 0.38082 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 47 1.80327 1.30585 1.07719 1.49724 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 48 1.80107 1.30653 1.07801 1.49679 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 49 1.80012 1.30682 1.07837 1.49660 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 50 1.79977 1.30692 1.07849 1.49653 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 51 1.79972 1.30694 1.07851 1.49652 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 52 1.79982 1.30691 1.07848 1.49654 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 53 1.13112 1.65303 1.51838 1.32128 54 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 54 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 55 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 56 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 57 1.73103 1.21988 1.16182 1.53844 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 58 1.73090 1.21993 1.16187 1.53840 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 59 1.73084 1.21996 1.16189 1.53838 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 60 1.73091 1.21993 1.16187 1.53841 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 61 1.73123 1.21979 1.16175 1.53850 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 62 1.73198 1.21947 1.16148 1.53872 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 3.86148 0.02126 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.04298 3.16834 64 0.08847 3.76540 3.44171 3.52340 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.06800 2.98166 4.19774 0.51433 0.91106 1.09861 0.40547 65 1.99374 0.65713 2.59640 1.30587 67 C + - , 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 66 0.65927 2.87255 1.02444 2.69977 68 A = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 67 2.04026 3.09929 0.25745 2.95845 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 68 0.88059 2.61509 0.85352 2.44891 70 g = - < 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 69 2.29314 3.35595 0.19303 3.22602 71 G = - < 1.38629 1.38629 1.38629 1.38629 0.06876 4.19774 2.96771 1.46634 0.26236 1.09861 0.40547 70 1.80736 2.65711 0.37156 2.57566 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.24960 4.16067 1.58335 1.46634 0.26236 1.35156 0.29953 71 1.58877 1.85044 1.99115 0.68892 73 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07058 3.01503 3.95806 0.65368 0.73423 0.14090 2.02935 72 1.69819 2.01405 2.00199 0.60062 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03064 4.19386 4.19386 1.46634 0.26236 0.95168 0.48791 73 1.15827 1.83497 1.95068 0.95666 76 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03770 4.19774 3.81825 1.46634 0.26236 1.09861 0.40547 74 0.94030 2.17416 1.16475 1.69400 77 a + - _ 1.38629 1.38629 1.38629 1.38629 0.10652 2.82170 3.18112 0.44871 1.01735 0.86222 0.54857 75 0.49716 2.19225 2.02390 1.91094 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.11153 4.17117 2.40679 1.46634 0.26236 1.55702 0.23669 76 1.31309 1.88722 1.07353 1.43666 80 g + - _ 1.38629 1.38629 1.38629 1.38629 0.12714 3.23540 2.52512 0.70360 0.68280 1.92311 0.15800 77 1.66092 1.45867 2.16023 0.77178 82 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07706 4.03521 2.87378 1.46634 0.26236 0.17756 1.81589 78 2.81929 0.43114 2.47899 1.57621 83 C = - > 1.38629 1.38629 1.38629 1.38629 0.03163 4.16246 4.16246 1.46634 0.26236 0.47305 0.97577 79 3.43924 0.23843 3.18027 1.97708 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 80 2.68802 1.04298 2.41871 0.71224 85 u = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 81 3.19075 0.32408 2.91513 1.70666 86 C = - > 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 82 2.92402 1.20540 2.67219 0.54886 87 U = - > 1.38629 1.38629 1.38629 1.38629 0.04649 3.49347 4.19774 0.80324 0.59398 1.09861 0.40547 83 3.32373 2.09158 3.13662 0.22682 89 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 84 2.63644 1.66276 2.33813 0.44276 90 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 85 3.27870 2.00454 3.08697 0.24595 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 86 3.47577 2.41150 3.21328 0.17536 92 U = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 87 0.56165 2.85812 1.19369 2.66997 93 A = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 88 3.38905 0.25704 3.13192 1.90186 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03052 4.19774 4.19774 1.46634 0.26236 1.09861 0.40547 89 3.73907 0.15863 3.49583 2.37963 95 C = - ) 1.38629 1.38629 1.38629 1.38629 0.10203 4.19774 2.50138 1.46634 0.26236 1.09861 0.40547 90 0.10177 3.63229 3.31976 3.37702 96 A + - : 1.38629 1.38629 1.38629 1.38629 0.01651 4.11221 * 1.46634 0.26236 0.00000 * // INFERNAL1/a [1.1.1 | July 2014] NAME Val STATES 289 NODES 76 CLEN 90 W 108 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:43 2015 COM [1] cmbuild --hand --enone Val_model.cm aligntRNAdb-Val.sto COM [2] cmcalibrate --seed 208 Val_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 323905291 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.4331 0.71867 ECMLC 0.68910 -6.75153 2.25343 1600000 594451 0.002019 ECMGC 0.32826 -44.03408 -29.18161 1600000 52411 0.007632 ECMLI 0.67102 -6.59826 2.58316 1600000 568658 0.002110 ECMGI 0.34978 -38.28803 -24.52365 1600000 49315 0.008111 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 108 151 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 15 35 109 152 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 16 37 110 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 113 - A - + MR 3 2 3 5 5 20 44 108 151 -13.126 -0.001 -12.941 -13.153 -14.045 1.999 -10.184 -9.419 -9.524 D 4 2 3 5 5 12 32 107 149 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 15 35 108 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 112 C G = = MP 6 5 3 10 6 21 43 107 150 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 7 5 3 10 6 13 33 105 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 33 105 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 30 102 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 14 35 106 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 14 35 106 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 111 A U = = MP 12 11 6 16 6 21 41 105 148 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -4.043 -10.294 3.953 -12.431 -13.588 -7.890 -3.414 -9.854 -1.615 -10.524 -6.045 -7.816 -11.599 -9.721 -8.892 ML 13 11 6 16 6 13 33 103 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 13 33 103 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 10 29 100 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 14 34 104 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 14 35 104 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 110 A U = = MP 18 17 6 22 6 20 39 103 146 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.098 -2.216 -10.293 3.657 -12.429 -13.581 -7.887 -1.995 -9.854 -0.912 -10.523 -1.651 0.724 -1.283 -9.718 -8.892 ML 19 17 6 22 6 13 33 101 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 13 33 101 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 10 29 98 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 14 34 102 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 14 34 102 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 109 A U = = MP 24 23 6 28 6 19 37 101 144 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.953 -3.631 -1.505 3.342 -12.012 -3.387 -7.346 -10.225 -9.761 2.388 -10.383 -3.675 -7.379 -11.029 -9.236 -8.747 ML 25 23 6 28 6 13 32 99 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 13 32 99 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 10 29 96 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 34 101 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 14 34 100 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 108 G C = = MP 30 29 6 34 6 17 36 99 142 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.218 -5.028 -10.448 2.895 -12.512 -12.269 -7.875 -10.489 -9.867 3.061 -10.478 -2.569 -7.846 -11.349 -9.764 -9.052 ML 31 29 6 34 6 12 32 97 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 31 97 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 10 29 94 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 13 33 99 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 33 98 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 107 U A = = MP 36 35 6 40 6 15 34 97 140 -14.078 -6.193 -0.020 -12.794 -13.073 -13.468 -0.402 -3.747 -9.278 -5.108 0.098 -9.893 1.052 -8.723 -2.183 -3.226 -9.607 -6.888 3.459 -4.329 -0.724 -7.939 ML 37 35 6 40 6 12 31 96 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 30 95 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 28 93 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 13 32 97 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 13 32 96 139 -4.233 -0.124 -7.744 -5.911 -7.017 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 105 G C = = MP 42 41 6 46 4 13 32 95 138 -13.280 -5.149 -0.042 -11.901 -10.793 -8.692 -11.262 2.127 -12.935 -10.643 -7.910 -11.262 -9.930 3.523 -10.343 -3.048 -8.045 -10.753 -10.026 -9.887 ML 43 41 6 46 4 11 30 94 137 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 29 94 136 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 28 92 135 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 12 31 95 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 12 31 94 137 -3.997 -0.108 -6.697 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 11 29 93 136 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 9 28 92 134 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 30 94 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 10 28 92 135 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 9 27 91 134 -8.445 -0.004 IL 53 53 3 53 2 10 29 93 135 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 9 27 91 134 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 57 89 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 57 89 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 39 70 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 31 G C = = MP 58 57 1 62 6 2 3 39 70 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.975 -8.637 -14.144 -6.098 -13.625 -9.811 -7.938 -13.665 -10.003 3.952 -10.200 -1.007 -8.297 -10.274 -10.381 -13.159 ML 59 57 1 62 6 1 1 38 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 38 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 35 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 39 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 39 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 30 C G = = MP 64 63 6 68 6 2 3 37 68 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.632 -12.874 -8.352 -11.826 -6.587 -7.838 3.998 -13.432 -14.145 -10.852 -7.863 -12.710 -9.245 -13.427 -10.365 -12.748 ML 65 63 6 68 6 1 1 36 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 36 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 33 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 37 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 37 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 29 U A = = MP 70 69 6 74 6 2 3 35 66 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 71 69 6 74 6 1 1 34 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 34 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 32 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 35 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 35 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 28 U A = = MP 76 75 6 80 4 2 3 33 64 -13.280 -13.487 -0.001 -11.901 -11.104 -11.363 -10.426 -7.602 -0.932 -10.576 -4.494 -9.694 -10.527 -7.581 -10.650 -9.729 3.945 -10.945 -6.485 -9.330 ML 77 75 6 80 4 1 1 33 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 32 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 31 62 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 34 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 33 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 31 62 -14.190 -0.000 -12.844 1.988 -10.069 -5.048 -9.471 D 83 81 6 84 3 0 0 30 61 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 30 61 -14.190 -0.571 -1.613 1.932 -4.233 -5.336 -3.237 D 86 84 3 87 3 0 0 29 60 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - a - + - ML 88 87 3 90 3 1 1 30 61 -13.620 -1.947 -0.433 0.887 0.334 -6.567 -0.186 D 89 87 3 90 3 0 0 28 59 -14.001 -9.514 -0.002 IL 90 90 3 90 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - + - ML 91 90 3 93 3 1 1 30 61 -2.292 -1.861 -0.942 -1.490 0.009 -4.958 1.382 D 92 90 3 93 3 0 0 28 59 -15.334 -0.441 -1.926 IL 93 93 3 93 3 1 1 32 63 -1.029 -0.984 -7.885 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 28 59 -13.660 -0.000 -12.314 1.275 -0.864 -0.619 -1.398 D 95 93 3 96 3 0 0 27 58 -13.914 -0.509 -1.750 IL 96 96 3 96 3 1 1 29 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - c - + - ML 97 96 3 99 3 1 1 27 58 -14.053 -1.660 -0.549 0.286 0.798 -7.163 0.049 D 98 96 3 99 3 0 0 23 54 -12.172 -7.685 -0.007 IL 99 99 3 99 3 1 1 30 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 28 59 -1.465 -0.650 -11.047 -6.805 0.798 -7.815 1.168 D 101 99 3 102 3 0 0 22 53 -5.444 -0.036 -9.514 IL 102 102 3 102 3 1 1 29 60 -0.857 -1.162 -9.732 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - A - + - ML 109 108 2 111 5 1 1 27 46 -6.204 -0.020 -12.941 -13.153 -14.045 1.791 -4.967 -1.061 -5.117 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 46 -4.203 -0.126 -5.882 -7.714 -6.988 0.000 0.000 0.000 0.000 [ MATP 30 ] 34 50 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -4.401 -11.390 -1.719 -7.626 1.002 -10.571 1.261 -9.692 -10.530 -7.597 -10.650 -9.792 3.485 -10.943 -4.702 -9.331 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 35 49 C G = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.819 -9.692 -10.530 -7.599 -3.057 -9.795 0.750 -10.943 -3.865 -9.332 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 48 U A = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -0.808 -11.390 -10.426 -7.626 -0.233 -10.571 0.743 -9.692 -10.530 -7.597 -10.650 -9.793 3.665 -2.749 -4.265 -9.332 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 47 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.275 -0.833 -10.497 2.557 -12.140 -10.826 -7.258 -10.666 -9.786 3.174 -10.249 -1.301 -7.397 -3.256 -9.271 -9.194 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 46 G C = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -12.044 -4.477 -14.535 -0.279 -13.658 -1.747 -7.938 -13.917 -10.006 3.889 -10.195 -6.574 -8.307 -10.259 -10.395 -13.722 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -10.047 1.307 -11.211 0.608 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.544 0.189 -10.451 1.515 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -9.998 -5.080 -10.940 1.989 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - A - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.941 -9.679 -2.665 -9.272 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - C - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 -9.350 1.988 -9.760 -5.068 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 57 100 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 4 59 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 4 57 100 -14.190 -0.000 -12.844 1.908 -9.439 -2.035 -9.147 D 167 165 2 168 3 0 2 56 99 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 58 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - G - + - ML 169 168 3 171 2 1 3 56 99 -14.843 -0.000 -2.816 -10.465 1.947 -9.458 D 170 168 3 171 2 0 2 55 98 -8.445 -0.004 IL 171 171 3 171 2 1 3 57 100 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 55 98 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 43 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 53 71 g c = = MP 174 173 1 178 6 2 2 29 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 70 g c = = MP 180 179 6 184 6 2 2 27 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 26 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 69 g c = = MP 186 185 6 190 6 2 2 25 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 68 g c = = MP 192 191 6 196 6 2 2 23 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 67 g c = = MP 198 197 6 202 6 2 2 21 38 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 20 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 20 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 21 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 21 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 66 g c = = MP 204 203 6 208 6 2 2 19 36 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 18 35 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 18 35 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 19 36 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 19 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 65 g c = = MP 210 209 6 214 4 2 2 17 34 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 17 34 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 17 33 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -13.489 -4.998 -3.494 -0.185 IL 214 214 5 214 4 1 1 18 35 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 15 33 -4.119 -0.099 -6.819 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.196 -0.002 -9.851 1.991 -7.312 -6.626 -6.785 D 217 215 6 218 3 0 0 9 27 -15.418 -10.931 -0.001 IL 218 218 3 218 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - U - + - ML 219 218 3 221 3 1 1 12 31 -11.196 -0.002 -9.851 -4.823 -0.957 -5.566 1.778 D 220 218 3 221 3 0 0 8 26 -15.418 -10.931 -0.001 IL 221 221 3 221 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - U - + - ML 222 221 3 224 3 1 1 11 29 -11.196 -1.422 -0.675 -4.840 -0.531 -5.600 1.702 D 223 221 3 224 3 0 0 7 25 -15.418 -10.931 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - C - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.152 1.353 -3.458 -2.031 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 47 90 -14.190 -0.080 -4.217 IL 230 230 2 230 3 1 3 49 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 72 - A - + - ML 231 230 2 233 3 1 3 47 90 -4.489 -0.066 -12.765 1.948 -9.509 -9.205 -2.852 D 232 230 2 233 3 0 1 46 89 -11.427 -0.026 -5.819 IL 233 233 3 233 3 1 2 48 91 -1.683 -0.549 -7.670 0.000 0.000 0.000 0.000 [ MATL 62 ] 75 - U - + - ML 234 233 3 236 5 1 3 46 89 -13.126 -0.053 -12.941 -4.808 -14.045 -3.622 -0.296 -7.736 1.632 D 235 233 3 236 5 0 0 45 88 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 47 89 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 76 103 u a = = MP 237 236 3 241 6 2 4 45 88 -14.026 -5.543 -0.032 -12.742 -13.022 -13.417 -0.986 -3.762 -7.131 0.508 -0.478 -4.646 -0.196 -1.418 -7.123 -2.568 -7.673 -3.015 2.600 2.456 -3.074 -6.124 ML 238 236 3 241 6 1 1 43 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 46 89 -10.761 -9.490 -5.399 -9.468 -0.047 -7.682 -4.876 1.955 -5.420 -3.961 D 240 236 3 241 6 0 0 41 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 45 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 44 87 -4.687 -0.089 -8.198 -6.366 -7.472 0.000 0.000 0.000 0.000 [ MATP 64 ] 77 101 U A = = MP 243 242 6 247 6 2 4 43 86 -14.026 -13.966 -0.010 -12.742 -7.183 -13.417 -8.288 -8.005 -8.295 0.112 -3.248 -1.299 1.692 -4.747 -8.159 -1.208 -8.674 -2.561 3.244 -4.781 0.005 -6.890 ML 244 242 6 247 6 1 1 41 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 45 88 -10.761 -9.490 -5.399 -9.468 -0.047 -7.682 1.966 -5.319 -4.756 -5.013 D 246 242 6 247 6 0 0 39 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 43 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 43 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 78 100 C G = = MP 249 248 6 253 6 2 2 41 84 -5.480 -4.244 -0.308 -12.732 -4.276 -3.941 -11.043 -11.321 -10.362 -0.280 -8.714 -10.508 3.784 -2.049 -10.465 -7.526 -10.586 -9.717 -1.657 -10.878 -0.269 -9.267 ML 250 248 6 253 6 1 1 39 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 44 87 -10.991 -9.720 -5.629 -9.698 -0.040 -7.912 -2.955 -3.969 1.732 -1.045 D 252 248 6 253 6 0 0 37 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 39 82 -5.504 -5.767 -0.080 -7.422 -8.198 -7.859 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 43 86 -5.791 -1.339 -9.303 -0.780 -8.576 0.000 0.000 0.000 0.000 [ MATP 66 ] 80 98 A U = = MP 255 254 6 259 6 2 2 38 81 -13.782 -13.721 -0.934 -6.017 -4.199 -1.298 -2.645 -0.392 -9.990 3.779 -12.113 -13.270 -1.251 -10.032 -4.133 -1.582 -10.221 -1.694 -2.184 -11.292 -9.405 -8.589 ML 256 254 6 259 6 1 1 37 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 43 86 -12.498 -11.227 -7.136 -11.205 -0.493 -1.829 0.532 -3.141 0.402 0.163 D 258 254 6 259 6 0 0 29 72 -14.139 -12.838 -8.635 -9.317 -9.334 -0.008 IL 259 259 5 259 6 1 1 37 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 38 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 81 97 c a = = MP 261 260 6 265 4 2 2 29 71 -12.012 -12.219 -0.477 -1.832 -2.974 0.583 -4.529 1.136 2.072 -0.825 0.744 -4.864 -4.596 1.307 -0.985 -1.955 1.027 -4.668 -2.142 -3.783 ML 262 260 6 265 4 1 1 37 80 -6.040 -6.222 -0.329 -2.511 0.311 -1.016 -0.112 0.422 MR 263 260 6 265 4 1 1 43 86 -10.620 -1.935 -7.516 -0.449 -2.079 1.626 -0.702 -3.982 D 264 260 6 265 4 0 0 27 69 -12.308 -11.989 -1.030 -0.972 IL 265 265 5 265 4 1 1 44 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 45 88 -0.618 -1.532 -8.434 0.000 0.000 0.000 0.000 [ MATL 68 ] 82 - a - + - ML 267 266 6 269 3 1 1 26 52 -3.623 -0.137 -6.754 0.735 -0.673 -2.676 0.634 D 268 266 6 269 3 0 0 25 51 -14.429 -0.440 -1.927 IL 269 269 3 269 3 1 1 26 52 -2.128 -0.384 -7.608 0.000 0.000 0.000 0.000 [ MATL 69 ] 85 - U - + - ML 270 269 3 272 3 1 1 25 51 -14.006 -0.021 -6.149 0.123 -1.331 -2.366 1.214 D 271 269 3 272 3 0 0 24 50 -12.569 -0.012 -6.960 IL 272 272 3 272 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 86 - C - + - ML 273 272 3 275 3 1 1 24 50 -14.172 -0.010 -7.230 -0.721 1.467 -4.026 -0.818 D 274 272 3 275 3 0 0 22 48 -9.420 -4.933 -0.050 IL 275 275 3 275 3 1 1 25 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 87 - A - + - ML 276 275 3 278 3 1 1 23 49 -5.463 -0.239 -2.946 1.219 -0.505 -1.187 -0.921 D 277 275 3 278 3 0 0 22 48 -9.976 -0.073 -4.368 IL 278 278 3 278 3 1 1 23 49 -3.722 -0.132 -6.422 0.000 0.000 0.000 0.000 [ MATL 72 ] 89 - A - + - ML 279 278 3 281 3 1 1 22 48 -13.994 -0.321 -2.325 1.380 -0.569 -2.864 -0.771 D 280 278 3 281 3 0 0 19 45 -12.650 -2.911 -0.206 IL 281 281 3 281 3 1 1 24 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 90 - a - + - ML 282 281 3 284 3 1 1 21 47 -3.905 -0.585 -1.907 0.741 0.391 -2.416 -0.269 D 283 281 3 284 3 0 0 11 37 -13.803 -9.316 -0.002 IL 284 284 3 284 3 1 1 24 50 -1.022 -0.988 -8.278 0.000 0.000 0.000 0.000 [ MATL 74 ] 93 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.312 -0.158 -3.565 0.831 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Val LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:43 2015 COM [1] cmbuild --hand --enone Val_model.cm aligntRNAdb-Val.sto NSEQ 282 EFFN 5.503510 CKSUM 323905291 STATS LOCAL MSV -8.6463 0.71867 STATS LOCAL VITERBI -9.8624 0.71867 STATS LOCAL FORWARD -3.7953 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.18837 1.43197 1.55360 1.40667 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 0.00000 * 1 4.35211 0.07565 4.25207 3.08466 1 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 2 0.08071 4.31847 3.00193 4.23200 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 3 0.93220 1.87636 1.42558 1.54741 3 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 4 1.02990 2.41326 0.79632 2.27840 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 5 1.06917 3.07115 0.58830 2.89920 5 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 6 1.79091 1.39932 1.79254 0.86776 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 7 1.50793 3.23846 0.36615 3.07886 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 8 3.64366 3.44999 4.18699 0.07590 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 9 0.05052 4.30691 3.94721 4.10537 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 10 3.16477 4.16438 0.07769 4.07549 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 11 4.37288 0.07497 4.26444 3.08880 11 C = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 12 4.37569 3.06913 4.26565 0.07589 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 13 4.36119 2.85816 4.24233 0.08830 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 14 0.06485 4.12136 3.60604 3.94212 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 15 0.14758 3.18593 3.17394 2.91818 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.30736 4.40073 1.37695 1.46634 0.26236 1.09861 0.40547 16 0.99225 1.37390 2.25799 1.30350 16 a + - _ 1.38629 1.38629 1.38629 1.38629 0.72242 4.12619 0.69659 1.46634 0.26236 3.11657 0.04532 17 1.49754 1.49089 2.06128 0.85836 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.35465 2.32556 1.60518 0.92104 0.50767 0.33630 1.25319 18 0.78171 1.82488 1.73706 1.58423 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14461 4.14461 1.46634 0.26236 0.42697 1.05695 19 1.25038 1.09110 2.43873 1.23620 21 c + - _ 1.38629 1.38629 1.38629 1.38629 0.69859 4.33162 0.71423 1.46634 0.26236 2.13331 0.12607 20 1.79610 1.19422 2.32052 0.83727 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.23184 1.70476 3.68455 0.96090 0.48215 0.04579 3.10645 21 0.05052 4.30691 3.94721 4.10537 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 22 0.09123 4.39384 2.84195 4.10257 28 A = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 23 0.08748 4.45040 2.89501 4.08689 29 A = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 24 3.35640 4.39762 0.06531 4.13175 30 G = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 25 4.16874 0.11266 3.98408 2.62470 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 26 0.26972 3.05474 2.04197 2.82183 32 A + - , 1.38629 1.38629 1.38629 1.38629 0.03505 3.80894 4.40073 0.88428 0.53275 1.09861 0.40547 27 2.18608 1.20897 2.11103 0.75923 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 28 3.23612 0.32129 2.92422 1.70506 35 C = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 29 1.99974 1.39765 1.97220 0.73752 36 u = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 30 1.28814 2.64351 0.56581 2.46270 37 G = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 31 2.49184 3.32313 0.16350 3.44077 38 G = - < 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 32 2.57914 0.64386 3.21367 1.02530 39 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 33 2.63640 1.38245 3.19420 0.45190 40 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 34 3.44884 3.17280 3.97863 0.09693 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 35 0.05052 4.30691 3.94721 4.10537 42 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 36 4.06809 0.06171 4.55882 3.43391 43 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 37 0.11661 3.71382 2.87691 3.52766 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 38 3.95798 0.07261 4.45490 3.23619 45 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 39 3.65838 0.17662 3.38597 2.28005 46 C = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 40 2.75484 0.62417 2.45146 1.15674 47 C = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 41 0.77353 2.11895 1.31205 1.90251 48 a = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 42 1.88339 3.18096 0.27932 2.99415 49 G = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 43 0.73921 2.28533 1.22484 2.06385 50 a = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 44 0.14771 3.57370 2.58955 3.37526 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 45 2.92916 4.22997 0.09402 3.82874 52 G + - , 1.38629 1.38629 1.38629 1.38629 1.40500 4.40073 0.29792 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 47 1.80307 1.30591 1.07726 1.49720 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 48 1.80075 1.30662 1.07813 1.49673 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 49 1.79972 1.30694 1.07851 1.49652 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 50 1.79933 1.30706 1.07866 1.49644 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 51 1.79924 1.30709 1.07869 1.49643 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 52 1.79931 1.30707 1.07867 1.49644 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.04011 0.13928 53 0.48372 2.25492 2.07211 1.87921 60 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07114 3.37167 3.37167 1.46634 0.26236 4.01427 0.01822 54 1.62784 1.62203 2.10583 0.72483 61 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07114 3.37167 3.37167 1.46634 0.26236 4.01427 0.01822 55 1.61087 1.56144 2.09212 0.76137 62 u + - _ 1.38629 1.38629 1.38629 1.38629 0.26151 3.37167 1.63076 1.46634 0.26236 4.01427 0.01822 56 1.17220 1.36308 1.78936 1.31909 63 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11097 3.19560 2.74737 1.46634 0.26236 4.09577 0.01678 57 1.73055 1.22008 1.16200 1.53830 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.17644 3.17217 2.12164 1.46634 0.26236 4.10514 0.01663 58 1.73045 1.22012 1.16203 1.53827 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 59 1.73043 1.22013 1.16204 1.53826 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 60 1.73056 1.22008 1.16200 1.53830 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 61 1.73095 1.21991 1.16185 1.53842 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 62 1.73181 1.21954 1.16154 1.53867 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.13533 0.01613 63 1.73350 1.21882 1.16092 1.53917 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.08708 2.48410 64 0.11531 3.55516 3.44370 3.02847 72 A + - , 1.38629 1.38629 1.38629 1.38629 0.05947 3.10186 4.36051 0.69167 0.69463 0.38844 1.13356 65 2.41981 1.65524 3.05604 0.39610 75 U + - , 1.38629 1.38629 1.38629 1.38629 0.05208 4.40073 3.25766 1.46634 0.26236 1.09861 0.40547 66 1.60177 1.53043 1.72456 0.90692 76 u = - < 1.38629 1.38629 1.38629 1.38629 0.02552 4.37417 4.37417 1.46634 0.26236 1.63635 0.21653 67 1.88925 1.29726 1.83056 0.87897 77 u = - < 1.38629 1.38629 1.38629 1.38629 0.03068 4.37417 4.03894 1.46634 0.26236 1.63635 0.21653 68 2.39456 0.45781 2.49320 1.64260 78 C = - < 1.38629 1.38629 1.38629 1.38629 0.16619 3.53276 2.08836 0.71697 0.66988 1.71103 0.19928 69 0.58459 2.25765 1.51283 2.13891 80 A = - < 1.38629 1.38629 1.38629 1.38629 0.43845 4.25122 1.07671 1.46634 0.26236 2.66158 0.07240 70 1.48352 1.34259 1.46338 1.27103 81 u = - < 1.38629 1.38629 1.38629 1.38629 0.21385 3.85600 1.76390 1.46634 0.26236 0.84528 0.56113 71 1.07628 1.66674 2.05937 1.07078 82 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09548 2.69648 3.74581 0.60250 0.79284 0.36102 1.19390 72 1.30654 1.85389 2.16167 0.78201 85 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03749 4.30831 3.75754 1.46634 0.26236 0.21835 1.62883 73 1.70035 0.64327 2.67955 1.49961 86 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02998 4.39168 4.06526 1.46634 0.26236 1.31764 0.31166 74 0.78133 1.71657 1.92036 1.53264 87 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14639 3.54121 2.23304 0.71124 0.67538 0.66431 0.72284 75 0.68676 1.74306 2.22997 1.54046 89 A + - _ 1.38629 1.38629 1.38629 1.38629 0.18408 4.30261 1.86695 1.46634 0.26236 1.67069 0.20840 76 1.04778 1.35663 2.09050 1.31627 90 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29101 2.81583 1.64695 0.87746 0.53758 2.99793 0.05118 77 1.23840 1.52135 2.13722 0.98416 93 u + - _ 1.38629 1.38629 1.38629 1.38629 0.47452 2.82812 1.14352 1.19160 0.36202 0.53436 0.88200 78 1.34859 1.51878 1.29896 1.39191 97 g = - > 1.38629 1.38629 1.38629 1.38629 0.03733 3.99967 3.99967 1.46634 0.26236 0.21555 1.64041 79 2.23723 1.62966 2.04253 0.56643 98 U = - > 1.38629 1.38629 1.38629 1.38629 0.06766 2.94587 4.35294 0.43366 1.04450 0.34809 1.22429 80 2.00732 2.65300 0.38949 2.13867 100 G = - > 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 81 1.02971 1.95477 1.14290 1.70156 101 a = - > 1.38629 1.38629 1.38629 1.38629 0.04081 3.58552 4.40073 0.73019 0.65743 1.09861 0.40547 82 1.22990 1.45179 1.41450 1.46759 103 a = - > 1.38629 1.38629 1.38629 1.38629 0.04621 3.41456 4.40073 0.62959 0.76103 1.09861 0.40547 83 3.31190 0.41464 3.04896 1.36428 105 C = - ) 1.38629 1.38629 1.38629 1.38629 0.03535 3.79600 4.40073 0.87458 0.53963 1.09861 0.40547 84 0.92119 1.96809 1.26911 1.70842 107 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 85 3.14323 0.65995 2.87672 0.95800 108 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 86 2.53453 0.87881 2.17705 0.93637 109 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 87 1.77418 1.53193 1.70732 0.83723 110 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 88 4.46361 3.29495 4.27490 0.06454 111 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 89 3.38014 4.43988 0.06313 4.17715 112 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02484 4.40073 4.40073 1.46634 0.26236 1.09861 0.40547 90 0.05052 4.30691 3.94721 4.10537 113 A + - : 1.38629 1.38629 1.38629 1.38629 0.01250 4.38838 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-1415.cm0000640000543100007160000017271412026236512017044 0ustar pchanlowelabINFERNAL1/a [1.1rc1 | June 2012] NAME tRNA1415G STATES 289 NODES 76 CLEN 90 W 524 ALPH RNA RF yes CONS yes MAP yes DATE Tue Sep 18 19:26:59 2012 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone TRNAinf-nc.cm ../trna1415G.sto COM [2] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmcalibrate --hfile cmcalibrate_files/TRNAinf.hfile --sfile cmcalibrate_files/TRNAinf.sfile --qqfile cmcalibrate_files/TRNAinf.qqfile --ffile cmcalibrate_files/TRNAinf.ffile --seed 208 TRNAinf.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1415 EFFN 1415.000000 CKSUM 1444642440 NULL 0.000 0.000 0.000 0.000 EFP7GF -7.1369 0.72703 ECMLC 0.78485 -5.33801 1.84918 1600000 338035 0.003550 ECMGC 0.36767 -20.36226 -9.58468 1600000 21038 0.019013 ECMLI 0.70900 -4.86437 2.85189 1600000 285193 0.004208 ECMGI 0.37171 -18.31787 -7.61545 1600000 21369 0.018719 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 524 1090 -15.394 -16.640 -0.019 -6.290 IL 1 1 2 1 4 23 48 527 1092 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 24 49 527 1092 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 173 - A - + MR 3 2 3 5 5 27 50 526 1091 -6.050 -0.023 -15.240 -10.080 -16.344 1.133 -2.012 -0.006 -0.830 D 4 2 3 5 5 21 43 524 1089 -9.788 -1.046 -7.415 -1.000 -6.840 IR 5 5 3 5 5 23 48 526 1091 -6.277 -0.029 -9.788 -7.956 -9.062 0.000 0.000 0.000 0.000 [ MATP 2 ] 3 171 G C = = MP 6 5 3 10 6 28 49 525 1090 -16.365 -16.304 -0.000 -15.080 -15.360 -15.755 -5.871 -3.943 -4.600 0.900 -4.081 -5.664 0.547 -6.378 -10.132 3.375 -8.831 -0.127 0.043 -9.685 -7.731 -2.997 ML 7 5 3 10 6 20 40 522 1087 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 22 44 524 1089 -10.826 -9.555 -0.070 -9.533 -4.667 -7.746 -2.855 -0.027 -3.677 1.487 D 9 5 3 10 6 16 36 516 1081 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 20 41 524 1089 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 42 523 1089 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 4 170 c g = = MP 12 11 6 16 6 27 47 523 1088 -16.375 -16.315 -0.000 -15.091 -15.371 -15.766 -10.493 -9.955 -10.473 1.296 -4.929 -6.888 2.425 -4.444 -7.267 2.420 -6.285 -0.643 0.990 -9.157 -3.794 -6.280 ML 13 11 6 16 6 19 40 520 1085 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 39 520 1085 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 16 36 515 1080 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 20 41 522 1087 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 41 522 1087 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 169 c g = = MP 18 17 6 22 6 25 45 521 1086 -16.375 -16.315 -0.000 -15.091 -15.371 -15.766 -5.305 -5.857 -5.666 1.932 -5.031 -7.138 2.063 -5.889 -7.855 1.876 -4.552 -0.856 1.766 -6.161 -2.618 -4.516 ML 19 17 6 22 6 19 39 518 1083 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 39 518 1083 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 16 35 513 1078 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 20 40 520 1085 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 20 41 520 1085 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 168 g c = = MP 24 23 6 28 6 23 43 519 1084 -7.046 -16.315 -0.011 -15.091 -11.680 -15.766 -3.419 -5.247 -6.311 1.806 -4.565 -4.828 1.776 -3.809 -5.603 2.103 -7.207 0.055 1.434 -7.890 -0.499 -5.595 ML 25 23 6 28 6 19 39 516 1082 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 39 516 1081 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 15 35 512 1077 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 21 42 518 1083 -6.215 -6.478 -0.048 -8.133 -8.909 -8.569 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 40 518 1083 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 8 167 g c = = MP 30 29 6 34 6 21 41 517 1082 -16.375 -16.314 -0.000 -15.091 -15.371 -15.766 -3.606 -3.918 -4.476 2.183 -4.542 -4.969 1.741 -5.332 -4.119 2.191 -6.371 -1.181 0.983 -6.817 -0.562 -3.587 ML 31 29 6 34 6 18 38 515 1080 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 18 38 515 1080 -7.573 -6.302 -0.864 -6.280 -1.414 -4.494 -0.222 0.693 -0.939 0.007 D 33 29 6 34 6 15 35 511 1076 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 19 39 516 1081 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 39 516 1081 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 9 166 g c = = MP 36 35 6 40 6 19 39 515 1080 -7.181 -16.315 -0.011 -11.215 -15.371 -15.766 -5.607 -5.664 -4.074 1.340 -4.069 -6.813 1.134 -5.447 -7.811 1.975 -8.384 -0.163 1.830 -2.985 -0.018 0.662 ML 37 35 6 40 6 17 37 513 1078 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 17 37 513 1078 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 15 35 511 1076 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 18 38 514 1079 -6.091 -6.354 -0.053 -8.009 -8.785 -8.446 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 38 514 1079 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 11 165 g c = = MP 42 41 6 46 4 17 37 513 1078 -15.600 -6.873 -0.024 -6.991 -10.344 -3.966 -10.163 2.503 -11.284 -10.759 -0.735 -10.850 -6.806 2.579 -10.846 -0.824 1.618 -10.017 -5.202 -6.134 ML 43 41 6 46 4 16 36 512 1077 -4.435 -4.617 -0.296 -3.347 -0.404 -0.634 -1.048 1.081 MR 44 41 6 46 4 16 36 511 1076 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 15 34 510 1075 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 37 512 1078 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 36 512 1077 -4.509 -0.075 -7.209 0.000 0.000 0.000 0.000 [ MATL 9 ] 12 - U - + - ML 48 47 6 50 3 15 35 511 1076 -5.631 -0.037 -7.688 -2.146 -4.841 -2.826 1.847 D 49 47 6 50 3 14 34 510 1075 -10.980 -0.036 -5.371 IL 50 50 3 50 3 15 35 511 1076 -5.640 -0.034 -8.340 0.000 0.000 0.000 0.000 [ MATL 10 ] 14 - A - + - ML 51 50 3 53 2 14 34 510 1075 -5.169 -0.041 1.154 -3.379 0.618 -2.793 D 52 50 3 53 2 13 33 509 1074 -9.443 -0.002 IL 53 53 3 53 2 14 34 510 1075 -7.244 -0.010 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 33 509 1074 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 13 483 1048 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 13 483 1048 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 29 45 -0.000 -14.504 -13.911 -14.551 [ MATP 15 ] 16 36 G C = = MP 58 57 1 62 6 2 3 29 45 -16.375 -16.315 -0.000 -15.091 -15.371 -15.766 -3.696 -6.884 -3.512 -0.072 -6.725 -5.034 0.363 -6.491 -3.665 3.467 -6.012 0.756 -0.708 -10.006 -4.760 -4.437 ML 59 57 1 62 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 29 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 29 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 17 35 C G = = MP 64 63 6 68 6 2 3 27 43 -16.375 -16.315 -0.000 -15.091 -15.371 -15.766 -10.673 -6.068 -7.442 -1.146 -6.674 -11.518 3.334 -10.192 -10.532 0.151 -6.807 -5.173 1.986 -5.136 -1.848 -5.982 ML 65 63 6 68 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 18 34 u a = = MP 70 69 6 74 6 2 3 25 41 -16.375 -16.315 -0.000 -15.091 -15.371 -15.766 -3.582 -3.978 -10.086 0.373 -3.256 -6.802 2.023 -8.637 -6.678 0.995 -10.556 -4.092 2.942 -7.403 -0.686 -8.139 ML 71 69 6 74 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 19 33 c g = = MP 76 75 6 80 4 2 2 23 39 -15.600 -15.807 -0.003 -8.794 0.555 -4.558 -2.281 -0.476 -3.717 -5.117 2.340 -5.134 1.611 -1.948 -4.320 -0.487 1.283 -4.273 0.241 -0.680 ML 77 75 6 80 4 1 1 26 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - + - ML 82 81 6 84 3 1 1 21 36 -16.506 -0.010 -7.170 1.844 -5.496 -2.981 -1.943 D 83 81 6 84 3 0 0 19 37 -9.278 -4.791 -0.055 IL 84 84 3 84 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - + - ML 85 84 3 87 3 1 1 20 35 -16.496 -0.167 -3.191 0.337 -2.481 1.217 -2.103 D 86 84 3 87 3 0 0 18 35 -11.194 -6.707 -0.014 IL 87 87 3 87 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - + - ML 88 87 3 90 3 1 1 19 34 -16.329 -1.577 -0.589 -1.339 -0.076 -3.097 1.344 D 89 87 3 90 3 0 0 17 33 -14.844 -10.357 -0.001 IL 90 90 3 90 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - U - + - ML 91 90 3 93 3 1 1 19 34 -1.783 -0.503 -8.119 -1.766 0.094 -3.307 1.344 D 92 90 3 93 3 0 0 17 32 -17.423 -0.073 -4.332 IL 93 93 3 93 3 1 1 18 34 -3.175 -0.170 -10.544 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - G - + - ML 94 93 3 96 3 1 1 17 32 -16.457 -0.000 -15.111 -1.512 -3.197 1.759 -2.687 D 95 93 3 96 3 0 0 13 31 -13.137 -8.650 -0.004 IL 96 96 3 96 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - G - + - ML 97 96 3 99 3 1 1 16 31 -16.457 -0.198 -2.963 -2.015 -3.154 1.752 -1.874 D 98 96 3 99 3 0 0 12 30 -13.137 -8.650 -0.004 IL 99 99 3 99 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - U - + - ML 100 99 3 102 3 1 1 15 30 -0.717 -1.361 -8.918 -1.874 -1.320 -2.793 1.670 D 101 99 3 102 3 0 0 11 26 -6.311 -0.030 -6.938 IL 102 102 3 102 3 1 1 15 30 -1.758 -0.518 -7.411 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.789 -3.923 -2.030 -2.102 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 467 1033 -16.510 -0.007 -7.613 IL 108 108 2 108 3 1 1 469 1034 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - g - + - ML 109 108 2 111 5 1 1 467 1033 -6.253 -0.024 -8.155 -15.463 -16.355 0.385 -2.869 0.834 -0.369 D 110 108 2 111 5 0 0 466 1031 -8.402 -0.058 -7.664 -6.038 -5.951 IL 111 111 3 111 5 1 1 467 1032 -6.100 -0.215 -3.056 -9.611 -8.884 0.000 0.000 0.000 0.000 [ MATP 30 ] 39 107 c g = = MP 112 111 3 116 6 2 2 466 1032 -7.184 -7.183 -0.020 -15.084 -15.364 -15.759 -3.226 -2.829 -5.596 0.927 -3.002 -2.719 2.397 -2.155 -4.678 -0.413 -8.373 0.462 2.371 -3.902 -0.942 -2.936 ML 113 111 3 116 6 1 1 465 1030 -9.763 -10.109 -0.077 -4.517 -9.959 -7.488 -1.852 1.280 -0.086 -1.506 MR 114 111 3 116 6 1 1 463 1028 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 457 1023 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 465 1031 -6.082 -6.345 -0.053 -8.000 -8.776 -8.436 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 465 1031 -5.271 -0.059 -8.782 -6.950 -8.056 0.000 0.000 0.000 0.000 [ MATP 31 ] 41 105 c g = = MP 118 117 6 122 6 2 2 464 1030 -16.375 -16.315 -0.000 -15.091 -15.371 -15.766 -10.673 -10.374 -10.673 1.163 -9.540 -6.036 2.735 -4.610 -10.531 -0.010 -11.045 -1.890 2.370 -10.856 -1.012 -3.156 ML 119 117 6 122 6 1 1 462 1027 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 461 1026 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 456 1021 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 463 1028 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 463 1028 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 42 104 g c = = MP 124 123 6 128 6 2 2 462 1028 -16.375 -16.315 -0.001 -15.091 -11.132 -15.766 -6.052 -3.379 -10.117 2.003 -5.706 -4.948 0.977 -10.684 -10.488 2.747 -7.834 -3.767 1.559 -7.479 -3.721 -4.645 ML 125 123 6 128 6 1 1 460 1025 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 459 1025 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 454 1020 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 461 1026 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 461 1026 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 43 103 G C = = MP 130 129 6 134 6 2 2 460 1026 -16.375 -16.314 -0.000 -15.091 -15.370 -15.765 -6.825 -3.771 -10.162 0.639 -7.672 -10.758 1.207 -7.049 -10.598 3.277 -10.846 -0.166 -1.986 -6.674 0.186 -4.278 ML 131 129 6 134 6 1 1 458 1023 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 458 1023 -7.796 -6.525 -0.703 -6.503 -1.637 -4.717 -0.443 -0.661 -1.092 1.113 D 133 129 6 134 6 0 0 453 1018 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 459 1024 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 459 1024 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 44 102 a u = = MP 136 135 6 140 4 2 2 458 1024 -15.600 -15.807 -0.000 -14.221 -4.444 -3.506 -4.885 2.617 -6.658 -8.594 1.510 -6.304 -3.744 1.885 -5.391 -2.553 1.074 -4.453 -0.846 -2.728 ML 137 135 6 140 4 1 1 457 1022 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 454 1019 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 452 1017 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 458 1023 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 457 1023 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 45 - C - + - ML 142 141 6 144 3 1 1 456 1022 -6.964 -0.012 -15.164 -3.786 1.411 -5.701 0.321 D 143 141 6 144 3 0 0 450 1015 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 456 1022 -4.431 -0.079 -7.131 0.000 0.000 0.000 0.000 [ MATL 36 ] 47 - U - + - ML 145 144 3 147 3 1 1 455 1021 -16.510 -0.000 -15.164 -13.029 -3.955 -14.166 1.976 D 146 144 3 147 3 0 0 447 1012 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 455 1020 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 48 - u - * - ML 148 147 3 150 3 1 1 454 1020 -16.510 -0.000 -15.164 -2.582 -0.245 0.280 0.828 D 149 147 3 150 3 0 0 442 1007 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 454 1019 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - a - * - ML 151 150 3 153 3 1 1 453 1019 -16.510 -0.000 -15.164 0.463 -0.300 -0.206 -0.086 D 152 150 3 153 3 0 0 435 1000 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 452 1017 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - a - * - ML 154 153 3 156 3 1 1 452 1018 -16.510 -0.000 -15.164 0.619 -0.776 -0.583 0.278 D 155 153 3 156 3 0 0 420 986 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 450 1015 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 51 - A - + - ML 157 156 3 159 3 1 1 451 1017 -2.145 -0.370 -15.164 1.585 -6.843 -0.043 -5.553 D 158 156 3 159 3 0 0 365 930 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 496 1061 -0.047 -4.963 -16.725 0.000 0.000 0.000 0.000 [ MATL 41 ] 101 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.530 -0.877 -2.877 -1.213 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 54 75 -16.510 -0.000 -15.164 IL 165 165 2 165 3 1 7 57 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 108 - a - + - ML 166 165 2 168 3 1 6 54 75 -16.510 -0.438 -1.935 0.644 -0.473 -1.336 0.401 D 167 165 2 168 3 0 4 53 74 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 56 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 109 - g - + - ML 169 168 3 171 2 1 5 53 75 -6.513 -0.016 0.161 -1.109 0.824 -0.625 D 170 168 3 171 2 0 4 52 74 -14.240 -0.000 IL 171 171 3 171 2 1 5 53 75 -5.547 -0.031 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 52 74 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 32 54 -1.780 -7.444 -13.911 -0.508 [ MATP 48 ] 111 134 g c = = MP 174 173 1 178 6 2 2 34 55 -14.602 -14.541 -0.000 -13.318 -13.597 -13.993 -8.533 -3.896 -2.866 1.680 -9.398 -8.972 1.308 -9.029 -8.786 2.813 -1.891 -0.258 0.142 -4.374 -0.299 -7.337 ML 175 173 1 178 6 1 1 30 52 -9.912 -10.259 -4.973 -1.755 -10.108 -0.580 -1.210 -1.135 0.047 1.056 MR 176 173 1 178 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 43 -19.888 -18.587 -14.384 -15.066 -15.083 -0.000 IL 178 178 5 178 6 1 1 34 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 112 133 u a = = MP 180 179 6 184 6 2 2 32 53 -14.602 -14.541 -0.053 -13.318 -13.597 -4.795 -8.514 -1.926 -8.557 0.812 -0.982 -9.392 2.058 -8.268 -8.481 2.082 -3.820 -2.595 2.154 -8.716 -3.348 -1.859 ML 181 179 6 184 6 1 1 30 51 -8.339 -8.685 -3.399 -0.181 -8.535 -6.064 -1.836 -3.094 1.776 -2.482 MR 182 179 6 184 6 1 1 30 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 42 -19.897 -18.595 -14.392 -15.074 -15.092 -0.000 IL 184 184 5 184 6 1 1 32 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 31 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 113 132 g c = = MP 186 185 6 190 6 2 2 30 52 -5.142 -5.006 -0.419 -13.265 -13.545 -2.377 -2.066 -6.164 -6.157 1.733 -2.611 -3.838 1.994 -4.471 -6.219 2.033 -4.435 -1.912 1.464 -6.298 -0.146 -4.186 ML 187 185 6 190 6 1 1 28 50 -8.339 -8.685 -3.399 -0.181 -8.535 -6.064 -1.836 -3.094 1.776 -2.482 MR 188 185 6 190 6 1 1 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 19 41 -19.918 -18.617 -14.414 -15.096 -15.113 -0.000 IL 190 190 5 190 6 1 1 29 51 -6.287 -6.549 -0.046 -8.205 -8.981 -8.641 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 29 51 -5.586 -0.047 -9.097 -7.264 -8.370 0.000 0.000 0.000 0.000 [ MATP 51 ] 115 130 c g = = MP 192 191 6 196 6 2 2 28 50 -14.241 -14.180 -0.715 -12.956 -13.236 -1.357 -2.548 -7.740 -7.931 -0.487 -3.034 -8.777 2.469 -7.735 -7.873 2.206 -8.407 -1.109 1.729 -3.121 -0.314 -3.029 ML 193 191 6 196 6 1 1 27 49 -8.339 -8.685 -3.399 -0.181 -8.535 -6.064 -1.711 -1.668 -2.455 1.677 MR 194 191 6 196 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 19 41 -20.023 -18.722 -14.519 -15.201 -15.218 -0.000 IL 196 196 5 196 6 1 1 28 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 116 129 u a = = MP 198 197 6 202 6 2 2 27 48 -13.527 -13.466 -0.499 -12.243 -12.522 -1.777 -7.144 -7.018 -7.223 1.629 -2.071 -8.065 0.584 -7.036 -7.170 0.937 -7.701 1.563 2.144 -1.321 0.506 -6.045 ML 199 197 6 202 6 1 1 26 48 -8.339 -8.685 -0.218 -3.094 -8.535 -6.064 1.767 -2.615 -2.223 -2.182 MR 200 197 6 202 6 1 1 26 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 19 41 -20.181 -18.879 -14.676 -15.358 -15.376 -0.000 IL 202 202 5 202 6 1 1 27 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 26 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 117 128 c g = = MP 204 203 6 208 6 2 2 25 47 -13.052 -12.992 -0.619 -11.768 -12.048 -1.523 -6.294 -6.281 -6.409 1.709 -5.804 -7.258 2.197 -6.340 -2.373 0.772 -0.859 -4.317 1.846 -6.568 0.584 -1.102 ML 205 203 6 208 6 1 1 24 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 24 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 19 41 -20.247 -18.946 -14.743 -15.425 -15.442 -0.000 IL 208 208 5 208 6 1 1 25 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 25 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 118 127 C G = = MP 210 209 6 214 4 2 2 24 45 -11.575 -0.423 -1.982 -10.196 -7.683 -7.469 -7.543 -3.342 -6.267 -8.181 3.092 -6.998 0.257 -3.125 -7.877 -0.575 1.895 -7.802 0.063 -0.784 ML 211 209 6 214 4 1 1 22 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 21 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 19 41 -15.724 -5.093 -2.214 -0.405 IL 214 214 5 214 4 1 1 23 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 22 43 -7.454 -0.010 -10.154 0.000 0.000 0.000 0.000 [ MATL 55 ] 119 - u - + - ML 216 215 6 218 3 1 1 21 42 -14.731 -0.010 -7.160 -0.473 -1.389 0.140 0.845 D 217 215 6 218 3 0 0 10 32 -17.432 -12.945 -0.000 IL 218 218 3 218 3 1 1 22 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 120 - u - + - ML 219 218 3 221 3 1 1 20 41 -14.721 -0.038 -5.273 -0.013 0.024 -2.221 0.830 D 220 218 3 221 3 0 0 9 30 -17.436 -12.949 -0.000 IL 221 221 3 221 3 1 1 21 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 121 - u - + - ML 222 221 3 224 3 1 1 19 40 -3.169 -0.954 -1.424 0.668 -0.645 -2.653 0.689 D 223 221 3 224 3 0 0 6 28 -17.451 -12.964 -0.000 IL 224 224 3 224 3 1 1 20 42 -1.234 -0.802 -9.739 0.000 0.000 0.000 0.000 [ MATL 58 ] 125 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.707 -0.664 0.028 -0.481 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 28 46 -16.510 -0.164 -3.221 IL 230 230 2 230 3 1 5 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 135 - G - + - ML 231 230 2 233 3 1 4 28 46 -0.978 -1.024 -10.688 0.192 -3.667 1.163 -0.891 D 232 230 2 233 3 0 3 26 45 -7.371 -0.011 -9.102 IL 233 233 3 233 3 1 5 27 46 -4.607 -0.061 -12.826 0.000 0.000 0.000 0.000 [ MATL 62 ] 139 - C - + - ML 234 233 3 236 5 1 5 26 45 -15.442 -0.000 -15.258 -15.470 -16.361 -2.132 1.249 -2.246 0.243 D 235 233 3 236 5 0 0 25 43 -5.959 -0.347 -5.220 -3.595 -3.507 IL 236 236 3 236 5 1 1 28 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 140 163 g c = = MP 237 236 3 241 6 2 6 25 44 -16.375 -6.056 -0.022 -15.091 -15.371 -15.766 -3.447 -6.252 -4.334 1.957 -5.971 -10.675 1.043 -7.028 -10.460 2.872 -7.451 0.784 -0.771 -3.915 -2.683 -5.459 ML 238 236 3 241 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 24 43 -6.294 -0.029 -9.805 -7.973 -9.079 0.000 0.000 0.000 0.000 [ MATP 64 ] 141 161 u a = = MP 243 242 6 247 6 2 4 23 41 -16.375 -16.315 -0.000 -15.091 -15.371 -15.766 -9.563 -5.602 -9.679 1.624 -5.729 -6.478 2.171 -7.515 -9.655 1.198 -10.200 -0.908 2.264 -4.167 -1.326 -1.893 ML 244 242 6 247 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 142 160 g c = = MP 249 248 6 253 6 2 2 21 39 -6.868 -7.122 -0.029 -15.091 -15.371 -7.955 -10.349 -3.725 -10.174 2.043 -11.158 -10.776 0.537 -7.316 -7.639 2.890 -6.676 -2.275 0.956 -10.037 -0.699 -2.731 ML 250 248 6 253 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 20 39 -6.380 -6.642 -0.043 -8.298 -9.074 -8.734 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 20 39 -5.331 -0.056 -8.842 -7.010 -8.116 0.000 0.000 0.000 0.000 [ MATP 66 ] 144 158 G C = = MP 255 254 6 259 6 2 2 19 37 -16.370 -16.309 -0.052 -10.648 -11.065 -4.878 -10.337 -3.388 -10.155 1.309 -5.224 -6.682 -2.089 -5.432 -3.935 3.585 -10.840 -2.569 -0.565 -6.727 -2.437 -5.428 ML 256 254 6 259 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 18 37 -12.568 -11.267 -7.064 -7.746 -7.763 -0.025 IL 259 259 5 259 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 145 157 G C = = MP 261 260 6 265 4 2 2 17 35 -15.543 -15.750 -0.042 -5.125 -10.286 -2.743 -10.104 -0.532 -2.984 -4.819 -4.093 -5.863 -10.543 3.840 -6.942 -1.595 -2.628 -5.412 -4.386 -5.043 ML 262 260 6 265 4 1 1 23 41 -4.687 -4.869 -0.244 -3.599 -0.669 1.134 -1.429 -0.313 MR 263 260 6 265 4 1 1 22 41 -5.740 -4.769 -0.653 -1.697 -0.454 0.951 -1.194 -0.152 D 264 260 6 265 4 0 0 17 36 -11.113 -10.794 -0.801 -1.234 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 146 - U - + - ML 267 266 6 269 3 1 1 14 32 -6.813 -0.013 -11.433 -1.977 -3.343 -4.309 1.847 D 268 266 6 269 3 0 0 13 31 -13.416 -0.071 -4.378 IL 269 269 3 269 3 1 1 14 32 -4.507 -0.075 -7.207 0.000 0.000 0.000 0.000 [ MATL 69 ] 148 - U - + - ML 270 269 3 272 3 1 1 13 31 -16.506 -0.001 -10.070 -2.456 -3.265 -2.622 1.828 D 271 269 3 272 3 0 0 15 34 -9.296 -0.119 -3.687 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 149 - C - + - ML 273 272 3 275 3 1 1 12 29 -16.508 -0.001 -11.379 -1.328 1.701 -3.934 -1.811 D 274 272 3 275 3 0 0 15 33 -8.214 -0.265 -2.606 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 150 - g - + - ML 276 275 3 278 3 1 1 10 28 -6.131 -0.037 -6.500 0.847 -2.918 0.887 -2.184 D 277 275 3 278 3 0 0 10 28 -7.313 -0.542 -1.705 IL 278 278 3 278 3 1 1 10 28 -5.182 -0.047 -7.882 0.000 0.000 0.000 0.000 [ MATL 72 ] 152 - A - + - ML 279 278 3 281 3 1 1 9 27 -16.494 -0.045 -5.029 1.861 -3.058 -3.267 -2.807 D 280 278 3 281 3 0 0 11 29 -11.462 -6.975 -0.012 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 153 - a - + - ML 282 281 3 284 3 1 1 8 17 -5.119 -0.130 -4.127 0.905 -1.466 -0.801 0.253 D 283 281 3 284 3 0 0 5 13 -13.340 -5.368 -0.036 IL 284 284 3 284 3 1 1 9 17 -3.169 -0.173 -8.930 0.000 0.000 0.000 0.000 [ MATL 74 ] 156 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.735 -0.503 -4.744 1.635 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1rc1 | June 2012] NAME tRNA1415G LENG 90 MAXL 528 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Tue Sep 18 19:26:59 2012 COM [1] /soe/pchan/labcore/share/bin/x86_64/infernal1.1/bin/cmbuild --hand --enone TRNAinf-nc.cm ../trna1415G.sto NSEQ 1415 EFFN 970.591309 CKSUM 1444642440 STATS LOCAL MSV -9.1407 0.72703 STATS LOCAL VITERBI -10.0956 0.72703 STATS LOCAL FORWARD -2.7751 0.72703 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42743 1.47154 1.30022 1.35467 1.38629 1.38629 1.38629 1.38629 0.12765 2.12361 8.32209 0.00406 5.50858 0.00000 * 1 2.08176 2.33263 0.34895 2.61971 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00014 9.55150 9.55150 1.46634 0.26236 1.09861 0.40547 2 1.87305 1.07625 0.97969 2.03984 4 g = - ( 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 3 1.41790 1.33051 1.32204 1.48349 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 4 1.48325 1.49856 1.09521 1.53627 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.00804 4.87287 7.94994 0.01834 4.00765 1.09861 0.40547 5 1.21933 1.53601 1.14939 1.75733 8 g = - ( 1.38629 1.38629 1.38629 1.38629 0.00014 9.55874 9.55874 1.46634 0.26236 0.33657 1.25251 6 1.80282 1.94152 1.19914 0.94103 9 u = - ( 1.38629 1.38629 1.38629 1.38629 0.00707 4.96553 9.55902 0.02011 3.91641 1.09861 0.40547 7 1.02780 3.27071 0.89200 1.63786 11 g = - ( 1.38629 1.38629 1.38629 1.38629 0.00798 9.55902 4.84407 1.46634 0.26236 1.09861 0.40547 8 2.87289 4.72048 3.34400 0.10618 12 U + - , 1.38629 1.38629 1.38629 1.38629 0.02544 3.90054 5.32053 0.00702 4.96311 0.01776 4.03957 9 0.58685 3.72356 0.95825 3.31830 14 A + - , 1.38629 1.38629 1.38629 1.38629 0.02831 3.58104 9.55423 0.00508 5.28411 0.02867 3.56618 10 2.64742 2.48124 0.22100 3.12783 16 G = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 11 3.50817 0.46205 2.62918 1.31707 17 C = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 12 2.40338 1.34121 2.04725 0.65591 18 U = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 13 1.87891 1.12648 1.36791 1.31515 19 c = - < 1.38629 1.38629 1.38629 1.38629 0.00234 9.55902 6.08819 1.46634 0.26236 1.09861 0.40547 14 0.10819 5.16475 3.44968 2.73220 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00708 9.55682 4.96389 1.46634 0.26236 3.53116 0.02971 15 1.15358 3.10310 0.54267 2.84062 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.11610 9.54988 2.21143 1.46634 0.26236 4.88240 0.00761 16 2.31265 1.43907 3.52716 0.45497 22 U + - _ 1.38629 1.38629 1.38629 1.38629 1.09301 9.43394 0.40840 1.46634 0.26236 7.42015 0.00060 17 2.60341 1.32200 3.66229 0.45617 23 U + - _ 1.38629 1.38629 1.38629 1.38629 0.34860 1.23587 5.58861 0.11531 2.21724 0.05086 3.00399 18 2.43226 3.59720 0.16753 3.24401 26 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00015 9.52255 9.52255 1.46634 0.26236 6.23565 0.00196 19 2.77869 3.56778 0.17274 2.68379 27 G + - _ 1.38629 1.38629 1.38629 1.38629 0.13611 9.52255 2.06215 1.46634 0.26236 3.55840 0.02890 20 2.68403 2.30143 3.32063 0.22883 28 U + - _ 1.38629 1.38629 1.38629 1.38629 0.92658 0.50753 6.15986 0.35413 1.20994 0.00795 4.83859 21 0.14644 4.09598 2.79259 2.84176 32 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00014 9.55620 9.55620 1.46634 0.26236 0.04772 3.06607 22 0.82466 3.69205 0.90251 2.03147 33 a = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 23 0.70971 2.04367 1.22658 2.46081 34 a = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 24 1.39292 2.62513 0.43433 3.45704 35 G = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 25 3.02046 0.36678 2.41608 1.77791 36 C = - > 1.38629 1.38629 1.38629 1.38629 0.00523 9.55902 5.26901 1.46634 0.26236 1.09861 0.40547 26 1.11983 3.36496 0.80886 1.64127 37 g + - , 1.38629 1.38629 1.38629 1.38629 0.01332 4.33024 9.55393 0.01074 4.53913 0.02704 3.62391 27 1.99508 1.01959 1.99017 1.00354 39 u = - < 1.38629 1.38629 1.38629 1.38629 0.00702 4.97266 9.55902 0.02026 3.90939 1.09861 0.40547 28 1.96487 0.86910 2.53289 1.01868 41 c = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 29 1.35703 2.06921 0.85644 1.65224 42 g = - < 1.38629 1.38629 1.38629 1.38629 0.00056 9.55902 7.61258 1.46634 0.26236 1.09861 0.40547 30 2.27340 1.93149 0.41360 2.39863 43 G = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55860 9.55860 1.46634 0.26236 0.25120 1.50449 31 0.93401 1.71479 1.39607 1.71782 44 a = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 32 3.99645 0.40890 5.31161 1.16377 45 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00817 4.81996 9.55902 0.01740 4.05982 1.09861 0.40547 33 9.88912 4.12581 10.62656 0.01636 47 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 34 3.16278 1.55624 1.19333 0.81293 48 u * - _ 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 35 1.06552 1.59431 1.52930 1.44513 49 a * - _ 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 36 0.95796 1.92355 1.78991 1.19316 50 a * - _ 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 37 0.28810 6.09446 1.41613 5.22055 51 A + - _ 1.38629 1.38629 1.38629 1.38629 0.25649 1.48650 9.55902 3.44276 0.03250 1.09861 0.40547 38 0.32618 1.99408 3.37563 2.22572 101 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 39 1.96292 1.43084 1.52816 0.90756 102 u = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 40 4.07046 0.49350 1.53690 1.84900 103 C = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 41 1.68140 0.84880 2.05427 1.35568 104 c = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 42 1.12964 2.75744 0.80536 1.79294 105 g = - > 1.38629 1.38629 1.38629 1.38629 0.01217 4.97188 5.26485 0.02024 3.91016 1.09861 0.40547 43 1.07982 2.65666 1.01387 1.48127 107 g = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55391 9.55391 1.46634 0.26236 0.02693 3.62796 44 0.94037 1.71382 2.30954 1.10856 108 a + - , 1.38629 1.38629 1.38629 1.38629 0.30333 9.55902 1.34103 1.46634 0.26236 1.09861 0.40547 45 1.27453 2.15281 0.81707 1.81674 109 g + - , 1.38629 1.38629 1.38629 1.38629 3.24055 4.50753 0.05147 0.01724 4.06898 0.01196 4.43210 46 1.55255 1.87097 0.68519 2.03772 111 G = - < 1.38629 1.38629 1.38629 1.38629 0.01451 8.34046 4.25690 1.46634 0.26236 9.20884 0.00010 47 2.06495 1.23474 1.26617 1.20279 112 u = - < 1.38629 1.38629 1.38629 1.38629 0.03739 8.32644 3.31173 1.46634 0.26236 9.21466 0.00010 48 1.49721 1.32909 1.28059 1.45391 113 g = - < 1.38629 1.38629 1.38629 1.38629 0.25207 3.54992 1.63948 0.01739 4.06037 9.22945 0.00010 49 2.84512 1.04523 1.15740 1.28749 115 c = - < 1.38629 1.38629 1.38629 1.38629 0.50147 8.07409 0.93128 1.46634 0.26236 9.30244 0.00009 50 1.60936 2.17192 1.20277 0.95278 116 u = - < 1.38629 1.38629 1.38629 1.38629 0.35235 7.57365 1.21586 1.46634 0.26236 9.41155 0.00008 51 1.57606 1.24565 1.83735 1.06068 117 u = - < 1.38629 1.38629 1.38629 1.38629 0.44959 7.22275 1.01783 1.46634 0.26236 9.45757 0.00008 52 4.19386 0.64714 2.05650 1.09821 118 C = - < 1.38629 1.38629 1.38629 1.38629 0.00229 6.77545 6.77545 1.46634 0.26236 1.40700 0.28087 53 1.70755 2.33937 1.29262 0.80351 119 u + - _ 1.38629 1.38629 1.38629 1.38629 0.00741 8.32644 4.94242 1.46634 0.26236 9.21466 0.00010 54 1.39383 1.37114 2.90411 0.81359 120 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02658 8.31952 3.65033 1.46634 0.26236 9.21750 0.00010 55 0.92555 1.83093 3.19008 0.91067 121 u + - _ 1.38629 1.38629 1.38629 1.38629 0.66131 2.19531 0.98752 0.55792 0.84956 9.22793 0.00010 56 0.89974 1.84368 1.37115 1.70772 125 a + - _ 1.38629 1.38629 1.38629 1.38629 1.73786 1.35154 0.57047 0.00308 5.78560 4.20290 0.01507 57 1.18540 4.11626 0.53167 2.40299 127 G = - > 1.38629 1.38629 1.38629 1.38629 0.19682 7.14313 1.72672 1.46634 0.26236 3.66681 0.02589 58 1.43041 2.18881 0.88877 1.43725 128 g = - > 1.38629 1.38629 1.38629 1.38629 0.01811 7.22275 4.06202 1.46634 0.26236 3.09979 0.04611 59 1.23545 1.92027 1.67184 0.98129 129 u = - > 1.38629 1.38629 1.38629 1.38629 0.00104 7.56197 7.56197 1.46634 0.26236 2.27058 0.10898 60 1.48579 1.22481 0.92653 2.47765 130 g = - > 1.38629 1.38629 1.38629 1.38629 0.04054 3.23358 8.06703 0.01584 4.15296 2.65442 0.07294 61 1.61253 1.34607 1.17424 1.46403 132 g = - > 1.38629 1.38629 1.38629 1.38629 0.00051 8.28386 8.28386 1.46634 0.26236 4.21696 0.01485 62 1.17321 1.27260 1.30141 1.97778 133 a = - > 1.38629 1.38629 1.38629 1.38629 0.00049 8.32095 8.32095 1.46634 0.26236 9.21691 0.00010 63 2.66190 0.80494 1.47086 1.37302 134 c = - > 1.38629 1.38629 1.38629 1.38629 0.42991 8.32095 1.05214 1.46634 0.26236 0.00774 4.86474 64 1.25411 3.91602 0.57991 2.00394 135 G + - , 1.38629 1.38629 1.38629 1.38629 0.70926 0.67858 7.33256 0.04142 3.20472 0.00132 6.62837 65 2.85998 0.52075 2.94221 1.21771 139 C + - , 1.38629 1.38629 1.38629 1.38629 0.00014 9.55851 9.55851 1.46634 0.26236 0.21636 1.63705 66 1.37789 2.03857 0.57015 2.95200 140 G = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 67 1.63992 1.25999 1.73180 1.06311 141 u = - < 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 68 1.33848 2.39410 0.73943 1.77717 142 g = - < 1.38629 1.38629 1.38629 1.38629 0.01283 4.75027 5.49771 0.01624 4.12858 1.09861 0.40547 69 1.82527 3.97523 0.26928 2.88018 144 G = - < 1.38629 1.38629 1.38629 1.38629 0.03532 9.55499 3.36306 1.46634 0.26236 4.09518 0.01679 70 2.93015 4.16344 0.08991 4.07215 145 G = - < 1.38629 1.38629 1.38629 1.38629 0.02913 9.51982 3.55306 1.46634 0.26236 0.54262 0.87041 71 2.75614 3.69709 4.36592 0.10651 146 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00940 4.71598 7.80686 0.01640 4.11851 0.04806 3.05929 72 3.08715 3.64340 3.20317 0.11927 148 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00104 9.55679 6.93473 1.46634 0.26236 0.05956 2.85046 73 2.30648 0.20781 4.10758 2.63697 149 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00049 9.55812 7.77813 1.46634 0.26236 0.13567 2.06459 74 0.80023 3.40415 0.77146 2.89680 150 g + - _ 1.38629 1.38629 1.38629 1.38629 0.02574 4.24583 4.50188 0.00983 4.62755 0.29064 1.37748 75 0.09658 3.50191 3.64687 3.32852 152 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03123 9.54795 3.48435 1.46634 0.26236 5.06945 0.00631 76 0.76022 2.39898 1.94092 1.21047 153 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09002 3.54634 2.86017 0.11152 2.24883 3.73822 0.02408 77 3.27844 1.73572 4.66332 0.25282 156 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00966 9.45900 4.65232 1.46634 0.26236 0.38026 1.15101 78 3.98906 0.09883 4.85842 2.69080 157 C = - > 1.38629 1.38629 1.38629 1.38629 0.00015 9.51966 9.51966 1.46634 0.26236 0.11358 2.23150 79 3.03047 0.27944 3.62132 1.77932 158 C = - > 1.38629 1.38629 1.38629 1.38629 0.00739 4.92066 9.55499 0.01931 3.95660 0.03387 3.40204 80 2.10694 0.75893 2.04087 1.27186 160 c = - > 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 81 1.19928 1.90398 1.18212 1.41476 161 g = - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.19052 9.55902 0.00930 4.68279 1.09861 0.40547 82 3.13176 0.77091 1.95234 1.04462 163 c = - > 1.38629 1.38629 1.38629 1.38629 0.00908 4.75835 7.67568 0.01637 4.12060 1.09861 0.40547 83 1.64952 0.97272 3.22610 0.94137 165 u = - ) 1.38629 1.38629 1.38629 1.38629 0.00014 9.55863 9.55863 1.46634 0.26236 0.26556 1.45575 84 1.47981 1.36679 1.59275 1.15826 166 u = - ) 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 85 1.99730 1.23240 1.36660 1.14653 167 u = - ) 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 86 1.72015 1.30155 1.34817 1.24086 168 u = - ) 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 87 1.52996 1.46314 1.28997 1.28494 169 u = - ) 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 88 2.06346 1.09399 1.07615 1.62351 170 g = - ) 1.38629 1.38629 1.38629 1.38629 0.00014 9.55902 9.55902 1.46634 0.26236 1.09861 0.40547 89 2.67095 0.43011 2.36467 1.67989 171 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01533 4.19038 9.54628 0.00941 4.67028 1.09861 0.40547 90 0.60165 2.77565 1.39117 1.95901 173 A + - : 1.38629 1.38629 1.38629 1.38629 0.50235 0.92914 * 1.09875 0.40540 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-arch.cm0000644000543100007160000017734412710016425017376 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME arch-042516 STATES 298 NODES 79 CLEN 93 W 648 ALPH RNA RF yes CONS yes MAP yes DATE Tue Apr 26 00:09:25 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto COM [2] cmcalibrate --hfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch.hfile --sfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch.sfile --qqfile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch.qqfile --ffile /projects/lowelab/users/blin/tRNAscan/models/1.6/cmcalibrate_files/arch.ffile --seed 208 /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-042516.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6998 EFFN 6998.000000 CKSUM 685422216 NULL 0.000 0.000 0.000 0.000 EFP7GF -8.3636 0.71853 ECMLC 0.60219 -8.28290 2.01328 1600000 591479 0.002029 ECMGC 0.31099 -28.80936 -14.99814 1600000 29337 0.013635 ECMLI 0.57832 -8.27545 2.34868 1600000 559197 0.002146 ECMGI 0.33731 -24.07142 -11.63492 1600000 26540 0.015072 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 648 1336 -17.699 -18.944 -1.070 -0.933 IL 1 1 2 1 4 17 43 651 1339 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 43 651 1339 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 370 - A - * MR 3 2 3 5 3 19 42 650 1338 -18.037 -0.000 -16.355 1.994 -13.648 -5.926 -12.999 D 4 2 3 5 3 14 39 647 1335 -19.269 -14.446 -0.000 IR 5 5 3 5 3 18 43 650 1338 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 369 - C - * MR 6 5 3 8 3 18 41 649 1337 -18.037 -0.000 -16.355 -14.660 2.000 -15.777 -12.823 D 7 5 3 8 3 14 39 647 1335 -19.269 -14.446 -0.000 IR 8 8 3 8 3 17 42 649 1337 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 368 - C - * MR 9 8 3 11 3 17 40 648 1336 -18.037 -0.000 -16.355 -13.697 1.888 -14.293 -1.744 D 10 8 3 11 3 14 39 647 1335 -19.269 -0.000 -12.931 IR 11 11 3 11 3 12 35 648 1336 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 367 - A - + MR 12 11 3 14 5 16 39 647 1335 -17.747 -0.000 -17.563 -17.775 -18.666 1.249 -2.632 0.061 -1.257 D 13 11 3 14 5 9 29 644 1332 -5.586 -0.577 -3.212 -4.643 -2.637 IR 14 14 3 14 5 11 33 647 1335 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 366 G C = = MP 15 14 3 19 6 16 38 646 1334 -18.676 -18.615 -0.003 -14.187 -9.008 -14.189 -4.953 -6.246 -12.464 0.961 -9.290 -7.566 -0.638 -13.154 -12.900 3.728 -13.146 -5.338 -3.824 -6.030 -10.668 -11.429 ML 16 14 3 19 6 11 31 643 1331 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 11 31 642 1330 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 8 26 637 1325 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 11 32 645 1333 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 11 32 645 1333 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 365 G C = = MP 21 20 6 25 6 16 37 644 1332 -18.673 -18.612 -0.009 -9.507 -7.677 -15.057 -14.179 -13.612 -9.718 -3.634 -12.904 -9.862 2.819 -13.580 -14.005 3.067 -14.338 -5.367 -2.597 -14.142 -1.796 -9.102 ML 22 20 6 25 6 11 31 642 1330 -6.818 -7.164 -1.878 -0.596 -7.014 -4.543 -0.047 -0.949 0.805 -0.383 MR 23 20 6 25 6 12 32 640 1328 -11.157 -9.886 -5.794 -9.864 -0.035 -8.078 -4.703 -6.308 1.973 -5.439 D 24 20 6 25 6 8 26 636 1324 -9.764 -8.462 -4.259 -4.941 -4.959 -0.186 IL 25 25 5 25 6 11 31 643 1331 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 11 32 643 1331 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 364 c g = = MP 27 26 6 31 6 17 35 642 1330 -7.439 -18.603 -0.015 -9.328 -8.543 -18.054 -12.790 -7.548 -9.608 -0.698 -6.965 -13.387 2.920 -9.726 -9.693 2.547 -9.015 0.275 -0.611 -4.664 -4.414 -9.300 ML 28 26 6 31 6 12 32 640 1328 -10.182 -10.528 -5.243 -0.048 -10.378 -7.908 -4.844 1.954 -5.392 -3.927 MR 29 26 6 31 6 13 31 639 1327 -12.911 -11.640 -4.347 -11.618 -0.076 -9.832 -1.690 1.358 0.037 -3.323 D 30 26 6 31 6 8 25 635 1323 -10.028 -8.726 -4.523 -5.205 -5.223 -0.153 IL 31 31 5 31 6 13 33 641 1329 -8.024 -8.287 -0.014 -9.942 -10.718 -10.379 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 11 31 641 1329 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 363 g c = = MP 33 32 6 37 6 17 33 640 1328 -7.122 -18.597 -0.010 -17.374 -17.654 -18.049 -12.689 -8.443 -12.539 0.079 -12.967 -13.173 2.799 -12.959 -5.945 2.840 -13.167 -3.190 -0.797 -4.976 -3.584 -8.893 ML 34 32 6 37 6 12 31 639 1327 -1.034 -11.540 -5.610 -1.034 -11.390 -8.919 -2.978 -2.868 -4.401 1.883 MR 35 32 6 37 6 12 30 638 1326 -13.333 -12.062 -2.155 -12.040 -0.369 -10.254 -6.095 -0.332 1.669 -6.555 D 36 32 6 37 6 8 25 635 1323 -10.028 -8.726 -4.523 -2.364 -5.223 -0.450 IL 37 37 5 37 6 13 32 639 1327 -8.600 -0.899 -1.121 -10.518 -11.294 -10.954 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 12 32 639 1327 -6.870 -0.019 -10.381 -8.549 -9.655 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 361 C G = = MP 39 38 6 43 6 15 31 638 1326 -18.663 -6.249 -0.019 -17.379 -17.659 -18.054 -12.945 -9.432 -12.935 0.274 -8.340 -12.233 3.089 -11.662 -12.820 2.374 -5.078 -3.870 -0.530 -13.097 -1.751 -8.009 ML 40 38 6 43 6 11 29 637 1325 -10.231 -10.577 -3.483 -0.145 -10.427 -7.957 -3.182 1.883 -4.465 -2.690 MR 41 38 6 43 6 12 29 637 1325 -12.974 -11.703 -0.050 -11.681 -4.939 -9.895 -4.185 0.408 1.336 -3.420 D 42 38 6 43 6 8 25 634 1322 -9.764 -8.462 -1.175 -4.941 -4.959 -1.034 IL 43 43 5 43 6 10 29 637 1325 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 13 31 639 1327 -0.591 -1.576 -13.394 -11.561 -12.667 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 357 G C = = MP 45 44 6 49 6 13 29 636 1324 -18.673 -18.613 -0.015 -6.596 -17.669 -18.064 -12.833 -3.657 -12.750 -0.915 -9.300 -9.483 2.625 -12.708 -2.326 3.013 -12.044 -4.609 -1.051 -12.768 -1.245 -8.900 ML 46 44 6 49 6 11 28 637 1324 -10.136 -10.482 -5.196 -0.050 -10.332 -7.861 -4.249 -3.871 -5.051 1.944 MR 47 44 6 49 6 10 25 633 1321 -8.311 -7.040 -2.949 -7.018 -0.277 -5.232 -1.031 1.359 -1.819 -0.593 D 48 44 6 49 6 8 23 631 1319 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 10 27 635 1323 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 10 27 635 1323 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 356 G C = = MP 51 50 6 55 4 11 27 634 1322 -17.888 -18.095 -0.004 -8.537 -12.718 -8.025 -12.542 0.358 -13.670 -5.147 -4.156 -13.231 -11.894 3.780 -9.143 -1.522 -0.899 -12.380 -8.056 -11.508 ML 52 50 6 55 4 11 27 636 1324 -10.231 -0.194 -3.017 -9.143 1.822 -6.254 -6.586 -1.182 MR 53 50 6 55 4 9 24 632 1320 -6.259 -5.288 -1.885 -0.534 -0.041 0.375 -1.010 0.304 D 54 50 6 55 4 8 23 631 1319 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 10 26 634 1322 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 11 27 635 1323 -0.590 -1.577 -11.205 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - + - ML 57 56 6 59 3 9 25 632 1320 -18.810 -0.004 -8.443 -7.572 -4.143 -4.521 1.961 D 58 56 6 59 3 7 23 630 1318 -11.771 -7.284 -0.010 IL 59 59 3 59 3 9 25 632 1320 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - + - ML 60 59 3 62 2 8 24 631 1319 -6.501 -0.016 1.233 -2.688 0.405 -2.564 D 61 59 3 62 2 7 23 630 1318 -11.211 -0.001 IL 62 62 3 62 2 9 24 631 1319 -1.936 -0.437 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 63 62 3 64 173 7 23 630 1318 [ BEGL 15 ] - - - - - - S 64 63 1 65 1 1 8 593 1281 0.000 [ BIF 16 ] - - - - - - B 65 64 1 66 116 1 8 593 1281 [ BEGL 17 ] - - - - - - S 66 65 1 67 4 0 2 82 159 -0.011 -13.589 -8.701 -7.683 [ MATP 18 ] 14 69 G C = = MP 67 66 1 71 6 2 4 82 159 -7.821 -18.604 -0.023 -9.330 -6.942 -9.378 -4.330 -8.035 -12.486 -1.791 -13.620 -9.897 -0.597 -13.171 -12.916 3.404 -13.166 2.098 -3.014 -12.344 -10.694 -9.271 ML 68 66 1 71 6 1 1 80 157 -7.041 -7.387 -0.610 -1.796 -7.237 -4.767 -0.231 -1.175 1.028 -0.587 MR 69 66 1 71 6 1 2 78 155 -11.444 -10.173 -5.069 -2.456 -0.352 -8.365 -4.452 1.908 -3.671 -3.038 D 70 66 1 71 6 0 0 74 151 -15.036 -13.734 -9.531 -10.213 -10.231 -0.005 IL 71 71 5 71 6 1 2 77 154 -7.654 -7.917 -5.835 -0.042 -10.348 -10.009 0.000 0.000 0.000 0.000 IR 72 72 6 72 5 1 1 81 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 68 C G = = MP 73 72 6 77 6 2 4 80 157 -18.643 -18.582 -0.011 -17.358 -7.186 -10.892 -12.939 -6.876 -10.242 -2.988 -7.500 -5.516 3.126 -9.659 -12.797 1.344 -13.311 -6.096 2.115 -13.122 -2.227 -6.917 ML 74 72 6 77 6 1 1 76 153 -12.281 -12.627 -3.011 -0.546 -12.477 -2.393 1.590 -0.458 -4.790 -2.147 MR 75 72 6 77 6 1 2 77 154 -13.453 -12.182 -2.451 -12.161 -0.294 -10.374 -5.891 1.552 -0.098 -3.102 D 76 72 6 77 6 0 0 74 150 -15.416 -14.114 -9.911 -1.808 -10.611 -0.489 IL 77 77 5 77 6 1 1 79 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 78 78 6 78 5 1 1 79 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 67 c g = = MP 79 78 6 83 6 2 4 78 155 -18.636 -18.575 -0.013 -6.792 -12.576 -14.090 -7.740 -1.125 -12.933 -0.922 -5.740 -9.863 2.577 -12.451 -12.791 1.586 -13.304 -10.200 2.576 -10.872 -4.330 -9.089 ML 80 78 6 83 6 1 2 75 152 -12.245 -12.591 -7.305 -0.011 -12.440 -9.970 1.494 -4.930 -5.310 0.170 MR 81 78 6 83 6 1 1 76 153 -14.025 -12.754 -1.151 -12.732 -1.048 -3.928 -0.123 -0.811 1.151 -1.777 D 82 78 6 83 6 0 0 73 150 -15.395 -14.093 -9.890 -2.085 -3.621 -0.552 IL 83 83 5 83 6 1 1 77 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 84 84 6 84 5 1 1 77 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 66 c g = = MP 85 84 6 89 4 2 4 76 153 -7.993 -4.889 -0.055 -16.483 -1.022 -2.311 -11.311 -2.966 -2.047 -3.228 2.312 -5.793 1.009 -2.914 -7.013 -5.820 0.126 -6.491 1.765 1.667 ML 86 84 6 89 4 1 1 74 151 -10.722 -10.905 -0.720 -1.352 -1.366 0.497 -6.161 1.129 MR 87 84 6 89 4 1 1 74 151 -11.137 -1.634 -3.877 -0.715 -2.461 0.297 0.352 0.393 D 88 84 6 89 4 0 0 72 149 -10.579 -10.260 -6.365 -0.020 IL 89 89 5 89 4 1 3 75 152 -6.778 -7.461 -0.023 -9.946 0.000 0.000 0.000 0.000 IR 90 90 6 90 3 1 1 75 152 -2.945 -0.443 -2.892 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - A - + - ML 91 90 6 93 3 1 3 74 151 -6.752 -0.013 -17.436 1.987 -5.602 -6.171 -13.924 D 92 90 6 93 3 0 0 72 148 -14.730 -1.703 -0.530 IL 93 93 3 93 3 1 3 74 151 -6.760 -0.015 -9.460 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - + - ML 94 93 3 96 3 1 2 73 150 -18.792 -0.000 -17.446 -3.328 -7.916 1.946 -4.565 D 95 93 3 96 3 0 0 71 148 -14.202 -1.373 -0.704 IL 96 96 3 96 3 1 1 74 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - C - + - ML 97 96 3 99 3 1 1 72 149 -18.801 -0.453 -1.892 -2.697 1.636 -3.948 -0.570 D 98 96 3 99 3 0 0 70 147 -13.501 -9.014 -0.003 IL 99 99 3 99 3 1 1 73 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - C - + - ML 100 99 3 102 3 1 1 71 148 -0.163 -3.243 -9.634 -2.353 1.678 -6.813 -0.749 D 101 99 3 102 3 0 0 70 146 -5.788 -0.027 -12.769 IL 102 102 3 102 3 1 1 71 147 -6.845 -0.013 -11.988 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - + - ML 103 102 3 105 3 1 1 70 146 -7.631 -0.007 -17.467 -7.560 -7.507 1.996 -14.082 D 104 102 3 105 3 0 0 67 144 -10.421 -5.934 -0.025 IL 105 105 3 105 3 1 1 70 146 -5.940 -0.027 -8.640 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - G - + - ML 106 105 3 108 3 1 1 69 145 -18.813 -0.010 -7.221 -6.722 -15.104 1.986 -5.166 D 107 105 3 108 3 0 0 67 144 -10.421 -5.934 -0.025 IL 108 108 3 108 3 1 1 69 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - U - + - ML 109 108 3 111 3 1 1 68 144 -0.787 -1.251 -17.457 -0.004 -0.917 -3.344 1.248 D 110 108 3 111 3 0 0 67 144 -0.589 -8.745 -1.587 IL 111 111 3 111 3 1 1 69 146 -0.345 -2.287 -6.971 0.000 0.000 0.000 0.000 [ MATL 29 ] 63 - A - + - ML 112 111 3 114 2 1 1 1 1 * 0.000 1.883 -5.472 -2.241 -3.684 D 113 111 3 114 2 0 0 0 0 * 0.000 IL 114 114 3 114 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 115 114 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 116 65 1 117 3 0 1 574 1262 -4.249 -0.078 -12.485 IL 117 117 2 117 3 1 2 593 1281 -0.093 -4.119 -7.634 0.000 0.000 0.000 0.000 [ MATL 32 ] 88 - G - + - ML 118 117 2 120 5 1 1 572 1260 -17.741 -0.014 -6.999 -12.340 -9.047 -1.411 -2.491 1.730 -2.964 D 119 117 2 120 5 0 0 577 1265 -10.394 -6.238 -9.655 -0.028 -7.943 IL 120 120 3 120 5 1 1 573 1261 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 89 185 C G = = MP 121 120 3 125 6 2 4 571 1259 -18.655 -18.594 -0.004 -17.371 -8.555 -18.046 -10.361 -5.748 -10.548 0.018 -4.892 -13.787 3.326 -9.512 -12.802 0.607 -4.428 0.721 0.485 -10.245 -1.888 -5.939 ML 122 120 3 125 6 1 1 572 1260 -12.562 -12.908 -5.264 -0.266 -12.758 -2.819 -6.668 1.175 0.780 -6.101 MR 123 120 3 125 6 1 1 577 1265 -12.352 -11.081 -6.990 -11.059 -0.015 -9.273 -2.544 -4.317 -5.213 1.907 D 124 120 3 125 6 0 0 570 1258 -13.701 -12.400 -8.197 -8.879 -8.896 -0.011 IL 125 125 5 125 6 1 1 571 1259 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 126 126 6 126 5 1 1 571 1259 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 90 184 c g = = MP 127 126 6 131 6 2 2 569 1257 -18.651 -18.591 -0.004 -17.367 -9.604 -9.422 -12.766 -5.852 -8.443 0.219 -6.286 -4.836 2.855 -12.428 -7.238 2.173 -8.192 -1.761 1.327 -8.993 -2.341 -6.660 ML 128 126 6 131 6 1 1 571 1259 -12.307 -12.653 -2.861 -2.348 -12.503 -0.588 -6.034 1.790 -6.739 -0.951 MR 129 126 6 131 6 1 1 576 1264 -12.991 -11.720 -2.430 -11.698 -0.299 -9.912 1.256 0.427 -2.164 -4.493 D 130 126 6 131 6 0 0 570 1258 -14.349 -13.047 -8.844 -9.526 -9.544 -0.007 IL 131 131 5 131 6 1 1 570 1258 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 570 1258 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 91 183 G C = = MP 133 132 6 137 6 2 2 567 1255 -7.131 -9.090 -0.017 -17.366 -9.178 -10.224 -12.628 -3.558 -12.453 -0.058 -13.413 -5.097 2.032 -6.547 -10.958 3.290 -4.193 -4.076 -0.177 -12.317 -4.784 -7.102 ML 134 132 6 137 6 1 1 571 1259 -10.013 -10.359 -5.074 -1.281 -10.209 -0.847 -4.078 -5.587 1.958 -4.812 MR 135 132 6 137 6 1 1 577 1265 -12.978 -11.707 -3.525 -11.686 -0.134 -9.899 -5.004 1.730 -1.576 -1.662 D 136 132 6 137 6 0 0 570 1258 -15.883 -14.582 -10.379 -11.061 -11.078 -0.003 IL 137 137 5 137 6 1 1 567 1255 -8.313 -0.024 -6.494 -10.231 -11.008 -10.668 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 566 1254 -7.760 -0.010 -11.271 -9.439 -10.545 0.000 0.000 0.000 0.000 [ MATP 36 ] 93 181 G C = = MP 139 138 6 143 6 2 3 565 1253 -18.648 -18.587 -0.002 -17.364 -9.312 -18.038 -15.000 -7.602 -15.288 -5.269 -17.114 -16.031 0.910 -15.309 -14.484 3.790 -15.019 -2.109 -12.468 -15.693 -6.665 -6.450 ML 140 138 6 143 6 1 1 570 1258 -8.857 -9.203 -3.917 -3.612 -9.053 -0.241 -2.608 -3.959 1.877 -3.333 MR 141 138 6 143 6 1 1 577 1265 -13.182 -11.911 -7.820 -11.889 -0.068 -4.608 -6.222 1.861 -1.581 -5.724 D 142 138 6 143 6 0 0 570 1258 -16.117 -14.815 -10.612 -11.294 -11.312 -0.002 IL 143 143 5 143 6 1 1 566 1254 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 566 1254 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 94 180 c g = = MP 145 144 6 149 4 2 2 563 1251 -17.875 -18.082 -0.005 -8.112 -12.623 -6.381 -12.447 1.542 -13.412 -4.680 2.720 -13.081 -5.173 2.577 -6.144 -3.580 -1.587 -12.311 -5.650 -9.573 ML 146 144 6 149 4 1 1 565 1253 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 4 1 1 576 1264 -11.400 -10.429 -4.723 -0.057 -6.720 1.636 -0.205 -6.092 D 148 144 6 149 4 0 0 570 1258 -11.651 -11.332 -1.253 -0.787 IL 149 149 5 149 4 1 1 565 1252 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 150 150 6 150 3 1 1 564 1252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 95 - C - + - ML 151 150 6 153 3 1 1 561 1249 -18.786 -0.005 -8.306 -6.740 1.783 -5.487 -0.922 D 152 150 6 153 3 0 0 576 1264 -14.530 -2.743 -0.234 IL 153 153 3 153 3 1 1 564 1252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 96 - U - + - ML 154 153 3 156 3 1 2 560 1248 -18.786 -0.000 -17.440 -5.974 -5.005 -7.914 1.981 D 155 153 3 156 3 0 0 578 1266 -14.548 -2.535 -0.273 IL 156 156 3 156 3 1 1 563 1251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 97 - c - * - ML 157 156 3 159 3 1 1 559 1247 -18.791 -0.001 -10.883 -0.639 0.570 -0.024 -0.169 D 158 156 3 159 3 0 0 581 1269 -14.276 -2.107 -0.381 IL 159 159 3 159 3 1 1 563 1251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 98 - a - * - ML 160 159 3 162 3 1 2 558 1246 -8.135 -0.005 -17.450 0.358 0.007 -0.276 -0.172 D 161 159 3 162 3 0 0 585 1273 -13.956 -1.316 -0.741 IL 162 162 3 162 3 1 1 559 1247 -1.012 -0.993 -9.100 0.000 0.000 0.000 0.000 [ MATL 42 ] 101 - u - * - ML 163 162 3 165 3 1 1 557 1245 -18.803 -0.003 -8.832 -0.072 -0.318 -0.182 0.449 D 164 162 3 165 3 0 0 597 1285 -13.218 -2.185 -0.358 IL 165 165 3 165 3 1 1 565 1253 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 102 - a - + - ML 166 165 3 168 3 1 1 556 1244 -1.871 -0.461 -17.456 0.998 -7.094 0.990 -6.630 D 167 165 3 168 3 0 0 603 1291 -0.010 -8.820 -7.699 IL 168 168 3 168 3 1 1 603 1291 -0.039 -5.267 -11.125 0.000 0.000 0.000 0.000 [ MATL 44 ] 179 - A - + - ML 169 168 3 171 2 1 1 1 1 * 0.000 1.616 -0.945 -1.761 -3.070 D 170 168 3 171 2 0 0 0 0 * 0.000 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 172 171 3 -1 0 0 0 0 0 [ BEGR 46 ] - - - - - - S 173 63 1 174 3 0 1 359 782 -18.814 -0.011 -6.978 IL 174 174 2 174 3 1 2 361 784 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 186 - A - + - ML 175 174 2 177 3 1 1 359 782 -5.361 -0.228 -3.034 1.172 -1.909 -2.094 0.317 D 176 174 2 177 3 0 0 357 780 -13.265 -2.496 -0.282 IL 177 177 3 177 3 1 3 369 792 -0.171 -3.163 -14.006 0.000 0.000 0.000 0.000 [ MATL 48 ] 196 - G - + - ML 178 177 3 180 2 1 1 358 781 -19.273 -0.000 -2.109 -1.645 1.651 -1.695 D 179 177 3 180 2 0 0 357 780 -15.494 -0.000 IL 180 180 3 180 2 1 1 359 782 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 49 ] - - - - - - B 181 180 3 182 238 0 0 357 780 [ BEGL 50 ] - - - - - - S 182 181 1 183 4 0 0 109 247 -2.303 -12.406 -6.961 -0.342 [ MATP 51 ] 197 225 G C = = MP 183 182 1 187 6 2 2 120 258 -16.374 -16.314 -0.003 -15.090 -9.121 -15.765 -10.362 -9.040 -10.189 1.077 -11.089 -10.796 1.586 -10.799 -2.541 3.017 0.749 -3.375 -0.492 -10.057 -4.198 -3.760 ML 184 182 1 187 6 1 1 119 256 -7.720 -8.066 -0.350 -2.475 -7.916 -5.446 -1.060 1.373 -1.850 -0.616 MR 185 182 1 187 6 1 1 117 255 -13.142 -11.871 -1.596 -11.850 -0.769 -3.610 -2.543 -1.108 1.107 0.275 D 186 182 1 187 6 0 0 94 231 -22.357 -21.055 -5.028 -17.534 -11.494 -0.045 IL 187 187 5 187 6 1 1 119 257 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 119 257 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 198 224 g c = = MP 189 188 6 193 6 2 2 118 256 -16.552 -16.492 -0.101 -6.492 -4.206 -8.924 -10.630 -9.508 -10.499 1.604 -1.518 -6.085 2.125 -10.772 -10.758 2.410 -11.093 0.896 0.026 -10.434 -4.979 -9.350 ML 190 188 6 193 6 1 1 118 255 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 116 253 -12.565 -11.294 -7.203 -11.272 -0.055 -5.083 -0.991 -2.650 1.663 -2.544 D 192 188 6 193 6 0 0 82 219 -22.313 -21.011 -16.808 -17.490 -17.508 -0.000 IL 193 193 5 193 6 1 1 117 255 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 117 255 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 199 223 C G = = MP 195 194 6 199 6 2 2 116 254 -16.452 -16.391 -0.675 -8.679 -7.053 -1.459 -10.750 -10.451 -10.750 -0.473 -9.616 -4.491 3.224 -5.070 -10.608 0.821 -11.122 -1.198 1.589 -7.289 -0.664 -7.266 ML 196 194 6 199 6 1 1 118 255 -10.988 -11.334 -6.048 -0.027 -11.184 -8.713 -5.460 -4.978 -6.302 1.976 MR 197 194 6 199 6 1 1 115 252 -14.268 -12.997 -8.906 -6.868 -0.455 -1.946 1.524 -7.830 0.157 -7.746 D 198 194 6 199 6 0 0 82 219 -22.314 -21.012 -8.265 -8.467 -17.509 -0.009 IL 199 199 5 199 6 1 1 119 256 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 119 256 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 200 222 C G = = MP 201 200 6 205 6 2 2 118 255 -15.803 -15.743 -0.047 -7.402 -5.375 -8.782 -10.102 -9.803 -10.102 -2.055 1.321 -10.946 3.097 -4.758 -3.727 0.858 -0.764 -3.420 0.954 -6.800 -2.820 -8.680 ML 202 200 6 205 6 1 1 117 254 -12.037 -12.383 -1.082 -0.927 -12.233 -9.762 0.104 0.783 -0.394 -1.171 MR 203 200 6 205 6 1 1 116 254 -13.987 -12.716 -0.142 -12.694 -4.393 -4.447 -3.607 -1.541 1.783 -2.905 D 204 200 6 205 6 0 0 73 211 -22.453 -21.152 -10.602 -17.631 -17.648 -0.001 IL 205 205 5 205 6 1 1 117 254 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 116 254 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 201 221 C G = = MP 207 206 6 211 6 2 2 116 253 -15.924 -15.863 -0.794 -8.355 -14.919 -1.252 -10.860 -4.190 -10.778 -2.214 -5.974 -11.496 3.593 -10.257 -4.257 -3.569 -11.127 -8.216 1.787 -11.005 -5.160 -5.220 ML 208 206 6 211 6 1 1 116 254 -11.483 -11.829 -1.782 -0.586 -11.679 -4.580 0.490 0.076 0.099 -1.089 MR 209 206 6 211 6 1 1 105 242 -12.131 -10.860 -6.769 -10.838 -0.062 -4.971 -0.612 0.504 -1.225 0.585 D 210 206 6 211 6 0 0 72 209 -22.454 -21.153 -9.701 -10.612 -9.810 -0.004 IL 211 211 5 211 6 1 1 119 256 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 118 256 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 202 220 c g = = MP 213 212 6 217 6 2 2 118 255 -15.164 -15.104 -0.042 -6.312 -6.793 -7.147 -10.290 -9.797 -3.951 -2.902 -9.163 -10.962 2.890 -9.779 -10.116 1.419 -2.383 2.367 -2.268 -10.453 -2.767 -8.858 ML 214 212 6 217 6 1 1 114 251 -11.399 -11.745 -0.624 -1.684 -11.595 -4.680 0.302 0.497 -3.020 0.301 MR 215 212 6 217 6 1 1 103 241 -12.397 -11.126 -2.670 -4.500 -0.328 -9.318 0.588 -1.108 -0.482 0.397 D 216 212 6 217 6 0 0 57 194 -22.553 -21.252 -11.514 -10.915 -17.748 -0.001 IL 217 217 5 217 6 1 1 116 254 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 218 218 6 218 5 1 1 116 254 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 203 219 c g = = MP 219 218 6 223 4 2 2 116 254 -2.036 -5.530 -0.671 -3.230 -11.039 -9.815 -11.163 1.956 -11.871 -13.284 2.655 -11.122 -10.824 0.443 -11.439 2.038 -1.907 -12.081 -9.295 -3.630 ML 220 218 6 223 4 1 1 83 221 -8.230 -2.572 -0.508 -2.998 1.362 -0.203 -1.245 -2.857 MR 221 218 6 223 4 1 1 72 209 -10.373 -9.402 -2.517 -0.281 1.317 -1.062 -3.580 -0.080 D 222 218 6 223 4 0 0 32 169 -17.975 -4.740 -3.040 -0.250 IL 223 223 5 223 4 1 1 125 262 -0.193 -12.910 -2.997 -15.395 0.000 0.000 0.000 0.000 IR 224 224 6 224 3 1 1 15 30 -2.121 -0.430 -5.165 0.000 0.000 0.000 0.000 [ MATL 58 ] 212 - G - + - ML 225 224 6 227 3 1 1 10 28 -16.658 -0.000 -15.312 -2.658 -3.508 1.362 0.243 D 226 224 6 227 3 0 0 6 25 -19.867 -9.495 -0.002 IL 227 227 3 227 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 213 - u - + - ML 228 227 3 230 3 1 1 9 27 -16.664 -0.000 -15.318 -0.395 0.386 -2.417 0.804 D 229 227 3 230 3 0 0 5 23 -19.865 -8.655 -0.004 IL 230 230 3 230 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 214 - A - + - ML 231 230 3 233 3 1 1 7 25 -16.676 -0.295 -2.434 1.057 -0.184 -2.197 -0.285 D 232 230 3 233 3 0 0 4 22 -19.861 -7.455 -0.008 IL 233 233 3 233 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 215 - A - + - ML 234 233 3 236 2 1 1 1 1 * 0.000 1.108 -1.864 0.416 -2.091 D 235 233 3 236 2 0 0 0 0 * 0.000 IL 236 236 3 236 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 237 236 3 -1 0 0 0 0 0 [ BEGR 63 ] - - - - - - S 238 181 1 239 3 0 0 353 776 -18.814 -0.032 -5.509 IL 239 239 2 239 3 1 1 354 777 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 226 - g - + - ML 240 239 2 242 3 1 1 353 776 -0.342 -2.260 -9.008 0.545 -3.505 0.868 -0.672 D 241 239 2 242 3 0 0 347 770 -5.117 -8.737 -0.046 IL 242 242 3 242 3 1 1 352 775 -3.412 -0.220 -4.401 0.000 0.000 0.000 0.000 [ MATL 65 ] 230 - C - + - ML 243 242 3 245 5 1 5 351 774 -17.652 -0.000 -17.468 -14.660 -13.054 -2.930 1.904 -6.368 -3.141 D 244 242 3 245 5 0 0 347 770 -14.215 -1.235 -2.798 -3.480 -1.549 IL 245 245 3 245 5 1 1 351 774 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 231 352 c g = = MP 246 245 3 250 6 2 6 350 773 -6.275 -18.561 -0.019 -14.862 -11.714 -14.876 -12.897 -8.723 -11.889 -0.835 -6.559 -8.265 2.941 -10.357 -12.775 2.291 -3.669 -0.527 0.491 -6.664 -0.617 -7.148 ML 247 245 3 250 6 1 1 349 772 -12.793 -13.139 -0.013 -6.944 -12.989 -10.518 -6.423 1.983 -5.694 -5.923 MR 248 245 3 250 6 1 1 347 770 -12.663 -11.392 -7.301 -11.370 -0.012 -9.584 -6.094 -7.844 1.990 -6.851 D 249 245 3 250 6 0 0 340 763 -17.185 -15.883 -4.429 -1.937 -12.380 -0.531 IL 250 250 5 250 6 1 2 351 773 -9.129 -0.013 -7.309 -11.047 -11.823 -11.483 0.000 0.000 0.000 0.000 IR 251 251 6 251 5 1 2 350 772 -0.591 -7.903 -13.326 -1.592 -12.600 0.000 0.000 0.000 0.000 [ MATP 67 ] 233 348 c g = = MP 252 251 6 256 6 2 6 348 771 -18.618 -18.557 -0.002 -17.334 -9.317 -18.008 -3.096 -7.274 -1.208 -0.275 -8.679 -12.762 2.975 -5.949 -11.890 1.582 -1.353 -1.739 1.505 -9.925 -2.512 -4.859 ML 253 251 6 256 6 1 1 347 770 -12.137 -12.483 -0.028 -5.851 -12.333 -9.862 -5.858 -5.547 1.977 -5.288 MR 254 251 6 256 6 1 1 346 769 -14.333 -13.062 -3.264 -13.040 -0.160 -11.254 1.452 -7.917 0.327 -7.831 D 255 251 6 256 6 0 0 336 759 -16.659 -15.357 -11.154 -2.958 -11.854 -0.200 IL 256 256 5 256 6 1 1 347 770 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 257 257 6 257 5 1 1 347 770 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 68 ] 234 347 G C = = MP 258 257 6 262 6 2 6 346 769 -7.626 -18.566 -0.007 -17.343 -17.623 -18.018 -12.605 -1.321 -12.426 -2.134 -13.509 -7.627 0.711 -13.100 -9.512 3.648 -11.732 -5.063 0.060 -10.511 -3.043 -11.387 ML 259 257 6 262 6 1 1 344 767 -10.657 -11.004 -4.513 -0.072 -10.853 -8.383 -4.239 -4.181 1.948 -4.902 MR 260 257 6 262 6 1 1 345 768 -14.302 -13.031 -0.141 -13.009 -3.437 -11.223 -3.744 -0.249 1.619 -6.303 D 261 257 6 262 6 0 0 335 758 -16.460 -15.159 -10.956 -11.638 -11.655 -0.002 IL 262 262 5 262 6 1 1 345 768 -7.806 -8.069 -0.016 -9.724 -10.500 -10.161 0.000 0.000 0.000 0.000 IR 263 263 6 263 5 1 1 345 768 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 69 ] 236 346 G C = = MP 264 263 6 268 6 2 4 344 767 -7.879 -8.091 -0.015 -17.367 -8.846 -18.042 -12.615 -7.149 -12.433 -0.465 -9.863 -8.159 -1.155 -10.540 -11.652 3.848 -11.753 -2.298 -2.660 -8.462 -4.468 -9.193 ML 265 263 6 268 6 1 1 343 766 -10.621 -10.967 -0.042 -5.376 -10.817 -8.347 1.976 -5.849 -5.262 -5.496 MR 266 263 6 268 6 1 1 344 767 -10.908 -9.637 -4.652 -9.615 -0.117 -4.835 1.573 -1.044 -2.833 -1.325 D 267 263 6 268 6 0 0 335 758 -16.460 -15.159 -10.956 -11.638 -11.655 -0.002 IL 268 268 5 268 6 1 1 343 766 -7.584 -7.847 -0.019 -9.502 -10.278 -9.939 0.000 0.000 0.000 0.000 IR 269 269 6 269 5 1 1 343 766 -6.520 -0.024 -10.032 -8.199 -9.305 0.000 0.000 0.000 0.000 [ MATP 70 ] 238 344 G C = = MP 270 269 6 274 4 2 6 342 765 -4.633 -18.087 -0.059 -16.502 -16.549 -6.545 -18.728 -3.433 -18.199 -8.501 -12.510 -18.245 -12.161 3.983 -12.196 -4.193 -12.870 -8.508 -14.954 -5.668 ML 271 269 6 274 4 1 1 341 764 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 272 269 6 274 4 1 1 343 766 -0.815 -9.086 -1.500 -3.710 0.436 1.256 -4.307 -2.263 D 273 269 6 274 4 0 0 335 758 -11.889 -11.570 -9.586 -0.003 IL 274 274 5 274 4 1 5 344 767 -0.412 -12.885 -2.009 -15.370 0.000 0.000 0.000 0.000 IR 275 275 6 275 3 1 1 341 764 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 245 - U - + - ML 276 275 6 278 3 1 4 340 763 -18.795 -0.000 -14.694 -6.171 -7.517 -10.317 1.993 D 277 275 6 278 3 0 0 335 758 -14.024 -7.356 -0.009 IL 278 278 3 278 3 1 1 340 763 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 246 - U - + - ML 279 278 3 281 3 1 3 339 762 -18.795 -0.000 -17.449 -11.433 -5.401 -11.765 1.991 D 280 278 3 281 3 0 0 335 757 -14.021 -9.534 -0.002 IL 281 281 3 281 3 1 1 339 762 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 247 - C - + - ML 282 281 3 284 3 1 2 338 761 -4.247 -0.078 -17.449 -7.103 1.993 -10.200 -6.629 D 283 281 3 284 3 0 0 335 757 -14.021 -0.043 -5.099 IL 284 284 3 284 3 1 1 381 805 -0.114 -4.256 -5.401 0.000 0.000 0.000 0.000 [ MATL 74 ] 264 - A - + - ML 285 284 3 287 3 1 1 329 751 -3.746 -0.112 -17.444 1.393 -10.266 0.457 -10.258 D 286 284 3 287 3 0 0 385 809 -0.036 -9.836 -5.401 IL 287 287 3 287 3 1 1 386 809 -0.063 -4.553 -17.281 0.000 0.000 0.000 0.000 [ MATL 75 ] 297 - A - + - ML 288 287 3 290 3 1 1 280 645 -4.478 -0.066 -17.468 1.969 -7.896 -3.783 -7.108 D 289 287 3 290 3 0 0 222 586 -8.990 -4.503 -0.068 IL 290 290 3 290 3 1 1 331 698 -0.074 -4.318 -16.051 0.000 0.000 0.000 0.000 [ MATL 76 ] 318 - A - + - ML 291 290 3 293 3 1 1 263 622 -3.949 -0.097 -17.468 1.836 -4.676 -2.436 -2.277 D 292 290 3 293 3 0 0 194 553 -8.990 -0.964 -1.043 IL 293 293 3 293 3 1 1 315 674 -0.074 -4.321 -16.582 0.000 0.000 0.000 0.000 [ MATL 77 ] 343 - U - + - ML 294 293 3 296 2 1 1 1 1 * 0.000 -6.371 -3.119 -3.534 1.921 D 295 293 3 296 2 0 0 0 0 * 0.000 IL 296 296 3 296 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 78 ] - - - - - - E 297 296 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME arch-042516 LENG 93 MAXL 640 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Tue Apr 26 00:09:26 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/arch-042516.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/arch-042516.sto NSEQ 6998 EFFN 17.942547 CKSUM 685422216 STATS LOCAL MSV -8.8438 0.71853 STATS LOCAL VITERBI -9.9223 0.71853 STATS LOCAL FORWARD -2.7735 0.71853 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56755 1.24192 1.19747 1.60615 1.38629 1.38629 1.38629 1.38629 0.01114 5.19593 5.19593 1.46634 0.26236 0.00000 * 1 1.84379 2.72487 0.32125 2.97623 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01291 5.19593 4.92182 1.46634 0.26236 1.09861 0.40547 2 3.10132 0.92225 0.75031 2.46315 2 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01553 5.19418 4.61928 1.46634 0.26236 1.19856 0.35900 3 2.38400 0.96722 0.88747 2.15429 3 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01872 4.54466 4.83832 0.84488 0.56143 1.36212 0.29587 4 2.20543 1.04607 0.84822 2.20449 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01895 4.32864 5.18778 0.70301 0.68338 1.21225 0.35315 5 2.25612 0.79879 1.21009 1.91598 7 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01121 5.18961 5.18961 1.46634 0.26236 0.67340 0.71329 6 2.36751 1.13700 0.76369 2.12389 8 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01114 5.19578 5.19578 1.46634 0.26236 1.10764 0.40098 7 2.11084 3.29105 0.24732 2.80092 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01350 5.19578 4.84509 1.46634 0.26236 1.10086 0.40434 8 3.73808 3.33917 3.82641 0.08453 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01372 5.19349 4.81947 1.46634 0.26236 1.23560 0.34342 9 0.60031 2.75382 1.18783 2.49142 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.02351 4.18274 4.83049 0.75008 0.63928 1.19545 0.36035 10 2.36767 2.73384 0.23480 2.98370 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.02377 4.66099 4.26672 0.93321 0.49971 1.34795 0.30080 11 2.85750 0.74757 1.76431 1.21144 16 c = - < 1.38629 1.38629 1.38629 1.38629 0.01895 5.18149 4.33139 1.46634 0.26236 1.26509 0.33158 12 2.34753 1.02779 1.64881 1.03756 17 c = - < 1.38629 1.38629 1.38629 1.38629 0.01154 5.17720 5.14492 1.46634 0.26236 1.01558 0.44972 13 1.94107 1.25407 1.70109 0.94514 18 u = - < 1.38629 1.38629 1.38629 1.38629 0.02554 4.71218 4.12062 0.97905 0.47107 1.22462 0.34795 14 0.02619 4.75199 4.58724 4.95697 20 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.28490 5.17643 0.68357 0.70282 1.14172 0.38459 15 3.40036 4.89234 0.06005 4.05033 22 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01129 5.18246 5.18246 1.46634 0.26236 1.03018 0.44152 16 2.73624 0.33747 3.51395 1.65112 23 C + - _ 1.38629 1.38629 1.38629 1.38629 0.28441 5.18769 1.41900 1.46634 0.26236 0.91636 0.51078 17 2.59547 0.32114 3.77646 1.73067 24 C + - _ 1.38629 1.38629 1.38629 1.38629 1.43040 0.28439 4.78966 0.02768 3.60092 0.04444 3.13577 18 4.71807 5.64053 0.01740 5.34631 27 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01577 4.60788 5.17185 0.88770 0.53035 1.14535 0.38289 19 4.56465 5.80842 0.02378 4.59647 29 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01262 5.19500 4.96212 1.46634 0.26236 1.12953 0.39036 20 1.38091 1.89088 2.72460 0.63085 30 U + - _ 1.38629 1.38629 1.38629 1.38629 0.73158 0.66689 5.19368 1.54305 0.24045 1.22547 0.34760 21 0.12756 3.75614 2.78864 3.35587 63 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06330 3.30718 3.70011 0.37566 1.16103 0.88488 0.53233 22 1.41572 2.17043 0.90328 1.43597 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.01182 5.17662 5.09871 1.46634 0.26236 0.92649 0.50408 23 1.11095 1.61984 0.96928 2.37013 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.01195 5.18491 5.07048 1.46634 0.26236 1.52732 0.24477 24 1.32452 1.82415 0.69411 2.61457 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.01133 5.18468 5.17326 1.46634 0.26236 0.80299 0.59418 25 3.16503 0.50944 2.60872 1.26117 69 C = - > 1.38629 1.38629 1.38629 1.38629 0.05926 2.95705 5.19159 2.71838 0.06826 0.76762 0.62384 26 2.15989 2.87442 0.25943 2.86952 88 G + - , 1.38629 1.38629 1.38629 1.38629 0.01675 5.19578 4.50331 1.46634 0.26236 1.10750 0.40105 27 2.32241 0.66148 1.60730 1.68499 89 C = - < 1.38629 1.38629 1.38629 1.38629 0.01454 5.19023 4.72572 1.46634 0.26236 1.39264 0.28558 28 2.23907 0.91550 1.30184 1.50917 90 c = - < 1.38629 1.38629 1.38629 1.38629 0.01761 5.18694 4.43439 1.46634 0.26236 1.33940 0.30381 29 2.10556 1.57445 0.54800 2.37519 91 G = - < 1.38629 1.38629 1.38629 1.38629 0.02059 4.43403 4.76568 0.77380 0.61851 1.62017 0.22048 30 2.79407 2.20858 0.22954 3.37924 93 G = - < 1.38629 1.38629 1.38629 1.38629 0.01317 5.17945 4.89862 1.46634 0.26236 1.78364 0.18395 31 1.67741 1.13122 0.91221 2.42059 94 g = - < 1.38629 1.38629 1.38629 1.38629 0.01454 5.17762 4.73322 1.46634 0.26236 1.24815 0.33832 32 3.73411 0.18801 4.14209 2.02793 95 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01413 5.17898 4.77983 1.46634 0.26236 1.42463 0.27522 33 3.73411 3.53481 4.30275 0.06891 96 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01133 5.17876 5.17876 1.46634 0.26236 1.37926 0.29004 34 1.59234 1.13865 1.49337 1.37957 97 c * - _ 1.38629 1.38629 1.38629 1.38629 0.01176 5.18174 5.10316 1.46634 0.26236 1.24903 0.33797 35 1.15368 1.45897 1.61067 1.37714 98 a * - _ 1.38629 1.38629 1.38629 1.38629 0.01443 4.74214 5.18459 1.16643 0.37320 1.01846 0.44809 36 1.34667 1.61532 1.56497 1.10270 101 u * - _ 1.38629 1.38629 1.38629 1.38629 0.01122 5.18917 5.18917 1.46634 0.26236 0.64296 0.74599 37 0.69011 4.31235 0.75870 4.08606 102 A + - _ 1.38629 1.38629 1.38629 1.38629 0.29621 1.38299 5.19593 3.62100 0.02712 1.09861 0.40547 38 0.31961 2.06337 2.48540 2.76061 179 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02115 5.19593 4.17436 1.46634 0.26236 1.09861 0.40547 39 2.61463 0.96997 1.09196 1.55046 180 c = - > 1.38629 1.38629 1.38629 1.38629 0.01125 5.18604 5.18604 1.46634 0.26236 1.51217 0.24901 40 3.64678 0.26571 2.15149 2.39745 181 C = - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.31160 5.18633 0.69359 0.69271 1.43066 0.27332 41 2.54814 0.58758 1.51656 1.91980 183 C = - > 1.38629 1.38629 1.38629 1.38629 0.01202 5.18706 5.05800 1.46634 0.26236 1.32035 0.31067 42 1.65786 1.38788 0.85217 2.01470 184 g = - > 1.38629 1.38629 1.38629 1.38629 0.01138 5.18756 5.16174 1.46634 0.26236 1.50528 0.25097 43 1.89031 2.10088 0.59820 1.73260 185 G = - > 1.38629 1.38629 1.38629 1.38629 0.01124 5.18741 5.18741 1.46634 0.26236 1.26866 0.33018 44 0.69804 2.27081 2.35108 1.19091 186 a + - , 1.38629 1.38629 1.38629 1.38629 0.15043 3.61485 2.18263 2.12435 0.12728 1.24842 0.33821 45 2.34426 2.47593 0.31997 2.36633 196 G + - , 1.38629 1.38629 1.38629 1.38629 1.46850 5.07697 0.26986 1.46634 0.26236 0.36440 1.18617 46 1.65755 1.61530 0.87388 1.64386 197 g = - < 1.38629 1.38629 1.38629 1.38629 0.03880 3.99006 3.93457 1.46634 0.26236 3.20387 0.04145 47 1.65271 1.38113 1.05337 1.56823 198 g = - < 1.38629 1.38629 1.38629 1.38629 0.07201 4.06489 2.95046 1.46634 0.26236 4.83053 0.00801 48 2.00760 0.96464 1.63121 1.24176 199 c = - < 1.38629 1.38629 1.38629 1.38629 0.30104 4.02911 1.41815 1.46634 0.26236 4.28112 0.01392 49 1.78795 1.07118 1.56087 1.27246 200 c = - < 1.38629 1.38629 1.38629 1.38629 0.05968 3.79232 3.34122 1.46634 0.26236 3.77969 0.02309 50 2.17360 0.78550 1.94348 1.24780 201 c = - < 1.38629 1.38629 1.38629 1.38629 0.30009 3.82791 1.43762 1.46634 0.26236 4.70517 0.00909 51 1.77212 1.31736 1.09282 1.48316 202 g = - < 1.38629 1.38629 1.38629 1.38629 0.06380 3.59167 3.37401 1.46634 0.26236 4.75285 0.00866 52 1.59784 1.35946 1.12429 1.53256 203 g = - < 1.38629 1.38629 1.38629 1.38629 0.21161 2.11285 2.66174 2.00805 0.14416 1.82489 0.17582 53 1.76230 2.26639 0.76772 1.34478 212 g + - _ 1.38629 1.38629 1.38629 1.38629 0.03539 4.05216 4.05216 1.46634 0.26236 4.68142 0.00931 54 1.43201 1.31670 2.13796 0.98014 213 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03528 4.05507 4.05507 1.46634 0.26236 4.57123 0.01040 55 0.90930 1.58083 2.04207 1.34082 214 a + - _ 1.38629 1.38629 1.38629 1.38629 0.16070 4.06029 2.03094 1.46634 0.26236 4.20583 0.01502 56 0.87109 2.02848 1.33783 1.67368 215 a + - _ 1.38629 1.38629 1.38629 1.38629 0.45343 3.16322 1.13239 0.93504 0.49852 3.02094 0.04998 57 1.74434 1.38990 1.22206 1.26756 219 g = - > 1.38629 1.38629 1.38629 1.38629 0.20110 3.73325 1.84357 1.46634 0.26236 4.68727 0.00925 58 1.70171 1.36076 1.16979 1.38338 220 g = - > 1.38629 1.38629 1.38629 1.38629 0.07019 3.59740 3.20932 1.46634 0.26236 2.59429 0.07764 59 1.41961 2.10407 0.70255 1.95960 221 g = - > 1.38629 1.38629 1.38629 1.38629 0.05561 3.82891 3.43093 1.46634 0.26236 4.67630 0.00936 60 1.37797 1.75170 0.98155 1.61094 222 g = - > 1.38629 1.38629 1.38629 1.38629 0.05368 3.82438 3.49225 1.46634 0.26236 2.27264 0.10874 61 1.43502 1.81084 0.85208 1.76115 223 g = - > 1.38629 1.38629 1.38629 1.38629 0.03472 4.07077 4.07077 1.46634 0.26236 4.42069 0.01210 62 1.73897 1.24636 1.26666 1.36658 224 c = - > 1.38629 1.38629 1.38629 1.38629 0.10530 4.07931 2.48857 1.46634 0.26236 4.72448 0.00891 63 1.84187 1.04201 1.36417 1.45610 225 c = - > 1.38629 1.38629 1.38629 1.38629 0.08861 4.01280 2.70734 1.46634 0.26236 0.02121 3.86399 64 1.07735 2.75958 0.88398 1.69799 226 g + - , 1.38629 1.38629 1.38629 1.38629 1.13784 0.39728 4.91435 0.10109 2.34182 1.84793 0.17146 65 3.31120 0.09700 4.44840 3.11733 230 C + - , 1.38629 1.38629 1.38629 1.38629 0.02688 5.17536 3.86932 1.46634 0.26236 0.80023 0.59643 66 2.47847 0.88093 1.18718 1.62633 231 c = - < 1.38629 1.38629 1.38629 1.38629 0.01170 5.17144 5.12335 1.46634 0.26236 1.27129 0.32916 67 1.93449 0.96070 1.48414 1.40169 233 c = - < 1.38629 1.38629 1.38629 1.38629 0.02406 5.17720 4.01039 1.46634 0.26236 1.37231 0.29239 68 2.22263 2.24589 0.36948 2.35653 234 G = - < 1.38629 1.38629 1.38629 1.38629 0.01594 4.59362 5.16812 0.89741 0.52361 0.79067 0.60429 69 2.20220 2.84633 0.25372 2.89181 236 G = - < 1.38629 1.38629 1.38629 1.38629 0.01505 4.67454 5.18285 0.94941 0.48934 1.67128 0.20826 70 3.61224 4.80919 0.04622 4.60284 238 G = - < 1.38629 1.38629 1.38629 1.38629 0.04959 3.15194 5.18288 1.38794 0.28714 1.48799 0.25596 71 4.07389 4.03906 4.75018 0.04424 245 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01130 5.18404 5.17902 1.46634 0.26236 1.62586 0.21908 72 4.59272 4.04224 5.12025 0.03424 246 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01127 5.18407 5.18407 1.46634 0.26236 1.63500 0.21685 73 4.74235 0.02828 5.14739 4.31622 247 C + - _ 1.38629 1.38629 1.38629 1.38629 0.05912 2.96033 5.18407 2.50951 0.08480 0.51224 0.91417 74 0.43079 4.62588 1.11154 4.49539 264 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09401 2.47470 5.19562 3.12397 0.04498 1.11715 0.39632 75 0.03984 4.85087 3.81583 4.68708 297 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05180 3.10240 5.19562 2.93284 0.05472 1.11715 0.39632 76 0.16549 3.47204 2.86339 2.74279 318 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07037 2.77404 5.19562 2.95263 0.05361 1.08695 0.41135 77 3.65450 3.06400 3.51128 0.10807 343 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02282 5.19579 4.07320 1.46634 0.26236 1.10707 0.40126 78 4.75442 0.05809 4.65267 3.26267 344 C = - > 1.38629 1.38629 1.38629 1.38629 0.01628 4.73199 4.91446 0.99573 0.46117 1.62055 0.22039 79 3.15056 0.29336 2.68391 1.94404 346 C = - > 1.38629 1.38629 1.38629 1.38629 0.01134 5.18255 5.17431 1.46634 0.26236 1.68632 0.20481 80 2.54284 0.38544 2.11483 2.11567 347 C = - > 1.38629 1.38629 1.38629 1.38629 0.01645 5.18250 4.53731 1.46634 0.26236 1.68785 0.20447 81 1.53429 1.67740 0.81648 1.86081 348 g = - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.08769 4.21946 1.19721 0.35959 1.83412 0.17406 82 1.91015 1.33635 0.77131 2.06566 352 g = - > 1.38629 1.38629 1.38629 1.38629 0.02219 4.19860 4.97217 0.96537 0.47939 0.29140 1.37521 83 2.98143 0.28299 3.15632 1.87623 356 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01115 5.19473 5.19473 1.46634 0.26236 1.16837 0.37233 84 2.37221 0.81635 1.04447 2.18211 357 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02295 4.07361 5.17123 1.19387 0.36104 1.16837 0.37233 85 2.17357 1.26865 0.73112 2.09031 361 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01666 4.64169 4.97974 0.91406 0.51232 1.17574 0.36903 86 2.41928 0.90021 0.99558 2.00234 363 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01117 5.19327 5.19327 1.46634 0.26236 1.02884 0.44226 87 2.35270 1.05157 0.92494 1.83919 364 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01115 5.19462 5.19462 1.46634 0.26236 0.97492 0.47357 88 2.85287 0.77484 0.85974 2.84261 365 c = - ) 1.38629 1.38629 1.38629 1.38629 0.01114 5.19584 5.19584 1.46634 0.26236 1.08838 0.41062 89 3.22282 0.35196 2.60659 1.69792 366 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01114 5.19591 5.19591 1.46634 0.26236 1.09861 0.40547 90 0.62336 2.57502 1.42650 1.91353 367 A + - : 1.38629 1.38629 1.38629 1.38629 0.02073 4.57956 4.57956 1.46634 0.26236 1.09861 0.40547 91 3.86754 0.12674 4.41774 2.45265 368 C * - : 1.38629 1.38629 1.38629 1.38629 0.02073 4.57956 4.57956 1.46634 0.26236 1.09861 0.40547 92 4.58872 0.03692 4.99306 3.94784 369 C * - : 1.38629 1.38629 1.38629 1.38629 0.02073 4.57956 4.57956 1.46634 0.26236 1.09861 0.40547 93 0.03554 4.71886 4.17019 4.55284 370 A * - : 1.38629 1.38629 1.38629 1.38629 0.01042 4.56924 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNA2-euk.cm0000644000543100007160000013070311021467310016613 0ustar pchanlowelab### cove V2 72 nodes ### node 0 type 6 1 -1 0.01220 0.00000 0.00000 0.96748 0.00407 0.01626 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.00000 0.25000 0.25000 0.25000 0.08333 0.00000 0.00000 0.33333 0.00000 0.58333 0.25000 0.25000 0.25000 0.25000 # INSL 0.30769 0.53846 0.07692 0.07692 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 3 2 -1 0.14286 0.42857 0.14286 0.14286 0.00000 0.14286 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.98367 0.00408 0.00408 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.50000 0.06148 0.36066 0.07787 # MATR ### node 2 type 1 3 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.05039 # MATP 0.00388 0.00388 0.06202 0.00388 # MATP 0.00388 0.67054 0.00388 0.04651 # MATP 0.12791 0.00388 0.00388 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 3 type 1 4 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.04651 # MATP 0.01163 0.00388 0.40310 0.01163 # MATP 0.00388 0.23256 0.00388 0.08140 # MATP 0.17442 0.00388 0.00775 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 4 type 1 5 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.08915 # MATP 0.00388 0.00388 0.51938 0.00388 # MATP 0.00388 0.10465 0.00775 0.05426 # MATP 0.17054 0.00388 0.01938 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 5 type 1 6 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.16667 # MATP 0.00775 0.00388 0.27132 0.00775 # MATP 0.00388 0.15891 0.00775 0.04264 # MATP 0.19380 0.00388 0.11628 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 6 type 1 7 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00775 0.00388 0.12403 # MATP 0.00388 0.00388 0.36047 0.00388 # MATP 0.01163 0.18992 0.01163 0.07364 # MATP 0.13178 0.00388 0.05814 0.00775 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 7 type 1 8 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.01163 0.11628 # MATP 0.00388 0.00388 0.28682 0.00775 # MATP 0.00388 0.23256 0.00388 0.09302 # MATP 0.12016 0.00388 0.07752 0.02713 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 8 type 1 9 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00407 0.00000 0.98780 0.00000 0.00407 0.00407 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00775 0.00388 0.29070 # MATP 0.00388 0.00388 0.05426 0.00388 # MATP 0.00388 0.38372 0.00388 0.03101 # MATP 0.19380 0.00388 0.00388 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 9 type 2 10 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00816 0.00000 0.96735 0.00000 0.02449 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11111 0.11111 0.66667 0.11111 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.00407 0.98780 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 10 type 2 11 -1 0.66667 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.97531 0.00000 0.00000 0.00000 0.02469 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.85714 0.00000 0.00000 0.00000 0.14286 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.33333 0.11111 0.22222 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.42041 0.01224 0.55510 0.01224 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 0 12 25 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 4 13 -1 0.00407 0.98780 0.00407 0.00407 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 1 14 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.01163 # MATP 0.00388 0.00388 0.04264 0.00388 # MATP 0.00388 0.64341 0.00775 0.23256 # MATP 0.02326 0.00388 0.00388 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 14 type 1 15 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.00388 # MATP 0.00775 0.00388 0.60853 0.00388 # MATP 0.00388 0.01550 0.00388 0.00388 # MATP 0.31008 0.00388 0.01550 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 15 type 1 16 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.01550 0.00388 0.10078 # MATP 0.01163 0.00388 0.28295 0.00388 # MATP 0.00388 0.25581 0.00388 0.00388 # MATP 0.27519 0.00388 0.02326 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 16 type 1 17 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00407 0.00000 0.98780 0.00000 0.00407 0.00407 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.03488 0.00388 0.00775 0.00775 # MATP 0.03101 0.00775 0.38372 0.00775 # MATP 0.13566 0.01163 0.00388 0.02713 # MATP 0.03876 0.00388 0.13566 0.15891 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 17 type 2 18 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.97561 0.00407 0.01220 0.00813 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 18 type 2 19 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00816 0.00000 0.98776 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.14228 0.00407 0.84146 0.01220 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 19 type 2 20 -1 0.50000 0.00000 0.25000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.66803 0.00000 0.32787 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03265 0.13878 0.06939 0.75918 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 20 type 2 21 -1 0.00602 0.00000 0.98795 0.00000 0.00602 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01220 0.00000 0.96341 0.00000 0.02439 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.40000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02410 0.36145 0.04819 0.56627 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.98780 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.97967 0.01220 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01224 0.00000 0.44898 0.00000 0.53878 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01250 0.00000 0.81875 0.00000 0.16875 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02484 0.17391 0.06211 0.73913 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10569 0.05285 0.04065 0.80081 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 -1 -1 0.80000 0.00000 0.00000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99585 0.00000 0.00000 0.00000 0.00415 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.96708 0.00823 0.00412 0.02058 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 5 26 -1 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99590 0.00000 0.00000 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.18293 0.03659 0.60163 0.17886 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 0 28 41 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 4 29 -1 0.00407 0.98374 0.00813 0.00407 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 1 30 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00405 0.97976 0.00405 0.00405 0.00405 0.00405 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00389 0.00389 0.00778 0.07393 # MATP 0.00389 0.00389 0.39689 0.00389 # MATP 0.00389 0.03113 0.00389 0.10506 # MATP 0.30350 0.01167 0.03891 0.00389 # MATP 0.20000 0.40000 0.20000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 30 type 1 31 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.14729 # MATP 0.00388 0.00388 0.29845 0.00388 # MATP 0.00388 0.10465 0.00388 0.00775 # MATP 0.35659 0.00388 0.04264 0.00775 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 31 type 1 32 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00775 0.00388 0.00388 0.22481 # MATP 0.00388 0.00775 0.24031 0.00388 # MATP 0.00388 0.26744 0.00388 0.00388 # MATP 0.20930 0.00388 0.00388 0.00775 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 32 type 1 33 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.01163 0.00388 0.00775 # MATP 0.00388 0.00388 0.14341 0.00388 # MATP 0.00388 0.74419 0.00388 0.03101 # MATP 0.00775 0.00388 0.01938 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 33 type 1 34 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00407 0.00000 0.98780 0.00000 0.00407 0.00407 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00775 0.37209 # MATP 0.00388 0.00388 0.24419 0.00388 # MATP 0.00388 0.25969 0.00388 0.00775 # MATP 0.04651 0.00775 0.01550 0.01163 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.77236 0.00407 0.21951 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.04878 0.00407 0.94309 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20325 0.30894 0.24797 0.23984 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.24797 0.17073 0.23984 0.34146 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29268 0.25203 0.17886 0.27642 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.86122 0.00000 0.13469 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00167 0.00000 0.05500 0.00000 0.94333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.31947 0.18636 0.20466 0.28952 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.71545 0.00813 0.27236 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 -1 -1 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99590 0.00000 0.00000 0.00000 0.00410 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.62195 0.23171 0.00407 0.14228 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 5 42 -1 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.79592 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.55691 0.09350 0.09350 0.25610 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 44 -1 0.98000 0.00000 0.00000 0.00000 0.02000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99490 0.00000 0.00000 0.00000 0.00510 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07071 0.02020 0.87374 0.03535 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 0 45 57 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 4 46 -1 0.78455 0.20325 0.00813 0.00407 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 1 47 -1 0.97475 0.00505 0.00505 0.00505 0.00505 0.00505 0.01818 0.90909 0.01818 0.01818 0.01818 0.01818 0.14286 0.14286 0.28571 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01538 0.01538 0.01538 0.03077 # MATP 0.01538 0.01538 0.26154 0.01538 # MATP 0.01538 0.41538 0.01538 0.03077 # MATP 0.09231 0.01538 0.01538 0.01538 # MATP 0.20000 0.20000 0.40000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 47 type 1 48 -1 0.97475 0.00505 0.00505 0.00505 0.00505 0.00505 0.05455 0.87273 0.01818 0.01818 0.01818 0.01818 0.14286 0.14286 0.28571 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01538 0.01538 0.01538 0.01538 # MATP 0.06154 0.01538 0.15385 0.01538 # MATP 0.01538 0.35385 0.01538 0.01538 # MATP 0.20000 0.01538 0.04615 0.03077 # MATP 0.20000 0.20000 0.40000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 48 type 1 49 -1 0.97500 0.00500 0.00500 0.00500 0.00500 0.00500 0.16981 0.75472 0.01887 0.01887 0.01887 0.01887 0.14286 0.14286 0.28571 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01587 0.01587 0.01587 0.06349 # MATP 0.01587 0.03175 0.33333 0.01587 # MATP 0.01587 0.30159 0.01587 0.01587 # MATP 0.04762 0.01587 0.06349 0.01587 # MATP 0.20000 0.20000 0.40000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 49 type 1 50 -1 0.97596 0.00481 0.00481 0.00481 0.00481 0.00481 0.77778 0.13333 0.02222 0.02222 0.02222 0.02222 0.14286 0.14286 0.28571 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.01818 0.01818 0.01818 0.01818 # MATP 0.03636 0.01818 0.41818 0.01818 # MATP 0.01818 0.20000 0.01818 0.01818 # MATP 0.07273 0.01818 0.07273 0.01818 # MATP 0.20000 0.20000 0.20000 0.40000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 50 type 1 51 -1 0.97934 0.00413 0.00413 0.00413 0.00413 0.00413 0.45455 0.18182 0.09091 0.09091 0.09091 0.09091 0.14286 0.28571 0.14286 0.14286 0.14286 0.14286 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.04762 0.04762 0.04762 0.04762 # MATP 0.04762 0.04762 0.09524 0.04762 # MATP 0.04762 0.04762 0.04762 0.04762 # MATP 0.09524 0.04762 0.19048 0.04762 # MATP 0.40000 0.20000 0.20000 0.20000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 51 type 1 52 -1 0.97967 0.00407 0.00407 0.00407 0.00407 0.00407 0.25000 0.25000 0.12500 0.12500 0.12500 0.12500 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.05556 0.05556 0.05556 0.05556 # MATP 0.05556 0.05556 0.05556 0.05556 # MATP 0.05556 0.05556 0.11111 0.05556 # MATP 0.05556 0.05556 0.05556 0.11111 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 52 type 1 53 -1 0.78776 0.00000 0.19592 0.00000 0.00408 0.01224 0.20000 0.00000 0.20000 0.00000 0.20000 0.40000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.16667 0.00000 0.66667 0.00000 0.00000 0.16667 0.25000 0.25000 0.25000 0.25000 # INSL 0.14286 0.14286 0.57143 0.14286 # INSR 0.05882 0.05882 0.05882 0.05882 # MATP 0.05882 0.05882 0.11765 0.05882 # MATP 0.05882 0.05882 0.05882 0.05882 # MATP 0.05882 0.05882 0.05882 0.05882 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 53 type 2 54 -1 0.98974 0.00000 0.00513 0.00000 0.00513 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01887 0.00000 0.96226 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09259 0.16667 0.11111 0.62963 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 2 55 -1 0.98974 0.00000 0.00513 0.00000 0.00513 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09434 0.00000 0.88679 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07407 0.37037 0.03704 0.51852 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 55 type 2 56 -1 0.98995 0.00000 0.00503 0.00000 0.00503 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.65306 0.00000 0.32653 0.00000 0.02041 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.18000 0.12000 0.04000 0.66000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 56 type 2 -1 -1 0.99563 0.00000 0.00000 0.00000 0.00437 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.94118 0.00000 0.00000 0.00000 0.05882 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.26316 0.10526 0.47368 0.15789 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 5 58 -1 0.01224 0.00000 0.98367 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00412 0.00000 0.39918 0.00000 0.59671 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00676 0.00000 0.97973 0.00000 0.01351 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00671 0.05369 0.02013 0.91946 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20492 0.02459 0.75820 0.01230 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00405 0.98381 0.00405 0.00405 0.00405 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.20000 0.20000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02846 0.82520 0.01626 0.13008 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 1 61 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.95968 0.00403 0.00403 0.00403 0.02419 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.10000 0.60000 0.10000 0.10000 0.00000 0.10000 0.25000 0.25000 0.25000 0.25000 # INSL 0.11111 0.66667 0.11111 0.11111 # INSR 0.00388 0.00388 0.00388 0.08527 # MATP 0.00775 0.00388 0.40310 0.00388 # MATP 0.00388 0.37209 0.00388 0.05426 # MATP 0.02326 0.00388 0.01938 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 61 type 1 62 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.07364 # MATP 0.00388 0.00388 0.53488 0.00775 # MATP 0.00388 0.10465 0.00388 0.02326 # MATP 0.18992 0.00775 0.02713 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 62 type 1 63 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.18605 # MATP 0.00388 0.00388 0.10078 0.00388 # MATP 0.00388 0.49225 0.00388 0.00388 # MATP 0.09690 0.00388 0.06977 0.01550 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 63 type 1 64 -1 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.00403 0.97984 0.00403 0.00403 0.00403 0.00403 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.16667 0.20000 0.20000 0.20000 0.20000 0.00000 0.20000 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00775 0.00388 0.09302 # MATP 0.00388 0.00775 0.01163 0.00775 # MATP 0.00775 0.77907 0.00388 0.01938 # MATP 0.03488 0.00775 0.00388 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 64 type 1 65 -1 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.00407 0.00000 0.98780 0.00000 0.00407 0.00407 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.25000 0.00000 0.25000 0.00000 0.25000 0.25000 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.25000 0.25000 0.25000 0.25000 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00388 0.00388 0.00388 0.00775 # MATP 0.00388 0.00388 0.00388 0.00388 # MATP 0.00388 0.93023 0.00388 0.01163 # MATP 0.00388 0.00388 0.00388 0.00388 # MATP 0.25000 0.25000 0.25000 0.25000 # MATL 0.25000 0.25000 0.25000 0.25000 # MATR ### node 65 type 2 66 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08537 0.00407 0.00407 0.90650 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 66 type 2 67 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.00407 0.00407 0.98780 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 67 type 2 68 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00407 0.97967 0.00813 0.00813 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.22764 0.00407 0.76016 0.00813 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00408 0.00000 0.99184 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.98780 0.00407 0.00407 0.00407 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00816 0.00000 0.98776 0.00000 0.00408 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.43496 0.05691 0.13821 0.36992 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 -1 -1 0.66667 0.00000 0.00000 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99588 0.00000 0.00000 0.00000 0.00412 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10612 0.24490 0.00816 0.64082 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Asp.cm0000644000543100007160000017240412573631164021416 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Asp STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Mon Apr 13 15:00:58 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Asp.sto COM [2] cmcalibrate --seed 208 Asp_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 3961600854 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.4483 0.71867 ECMLC 0.55478 -8.01433 2.77720 1600000 477832 0.002511 ECMGC 0.29095 -44.65255 -27.98012 1600000 51143 0.007821 ECMLI 0.53310 -8.13976 3.01995 1600000 460136 0.002608 ECMGI 0.29905 -40.41672 -24.41095 1600000 47955 0.008341 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 38 99 118 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 40 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 95 - u - + MR 3 2 3 5 5 23 47 98 117 -13.126 -0.001 -12.941 -13.153 -14.045 0.532 -0.413 -7.185 0.845 D 4 2 3 5 5 14 35 96 116 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 38 98 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 94 G C = = MP 6 5 3 10 6 24 47 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.074 -8.727 -10.259 2.207 -12.346 -13.207 -7.769 -10.320 -9.836 3.187 -10.493 1.093 -7.723 -11.459 -9.617 -3.014 ML 7 5 3 10 6 16 36 95 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 36 95 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 33 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 37 97 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 38 96 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 93 A U = = MP 12 11 6 16 6 24 45 95 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.114 -8.784 -9.791 3.975 -12.400 -13.489 -7.913 -9.761 -9.874 -5.445 -10.538 -2.108 -7.842 -11.598 -9.734 -8.699 ML 13 11 6 16 6 15 36 93 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 36 93 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 33 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 37 95 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 37 94 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 92 G C = = MP 18 17 6 22 6 23 43 93 112 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.460 -3.577 -12.486 1.053 -13.348 -10.039 -7.923 -12.375 -9.978 3.778 -10.245 -3.178 -8.202 -10.415 -10.245 -11.188 ML 19 17 6 22 6 15 36 91 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 36 91 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 33 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 37 93 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 37 92 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 91 A U = = MP 24 23 6 28 6 21 41 91 110 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.106 -10.294 3.343 -12.430 -13.521 -7.883 -10.338 -9.853 2.217 -10.521 -0.072 -7.811 -11.584 -9.716 -8.893 ML 25 23 6 28 6 15 36 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 35 89 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 32 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 36 91 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 37 90 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 90 U A = = MP 30 29 6 34 6 19 39 89 108 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -3.875 -11.087 -10.312 -0.879 -2.649 -3.289 -0.428 -9.602 -10.389 -7.140 -10.550 -9.269 3.756 -10.792 -0.462 -2.894 ML 31 29 6 34 6 15 35 88 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 35 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 12 32 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 36 89 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 36 88 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 89 A U = = MP 36 35 6 40 6 17 37 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -9.997 -8.655 -10.154 3.561 -12.131 -12.744 -7.500 -10.257 -9.791 1.224 -10.429 -1.506 0.183 -3.292 -9.374 -1.962 ML 37 35 6 40 6 14 35 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 34 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 12 32 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 35 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 35 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 88 U A = = MP 42 41 6 46 4 15 35 85 104 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.627 -8.777 -10.571 -0.412 -9.692 -10.530 -7.599 -10.650 -9.794 3.860 -3.329 -1.273 -2.336 ML 43 41 6 46 4 13 34 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 13 33 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 32 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 34 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 14 34 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 13 33 83 102 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 32 82 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 34 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 12 32 82 101 -5.879 -0.025 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 11 31 81 100 -8.445 -0.004 IL 53 53 3 53 2 12 32 82 101 -4.439 -0.068 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 11 31 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 11 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 11 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 11 27 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.025 -12.794 -5.902 -13.468 -11.624 -8.649 -12.892 -1.553 -13.446 -9.956 -7.933 -12.716 -9.987 3.834 -10.230 0.466 -8.240 -10.366 -10.297 -11.633 ML 59 57 1 62 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 U A = = MP 64 63 6 68 6 2 3 22 40 -14.054 -13.993 -0.001 -12.769 -13.049 -13.444 -10.410 -9.346 -10.323 0.608 -9.877 -11.592 -5.561 -10.011 -10.071 -5.954 -10.550 -6.713 3.849 -11.268 -7.532 -9.033 ML 65 63 6 68 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 21 40 -9.798 -8.527 -0.146 -8.505 -3.639 -6.719 1.913 -3.962 -3.457 -3.657 D 67 63 6 68 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 A U = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.164 -8.870 -10.305 3.932 -11.418 -12.888 -7.010 -10.267 -9.902 -5.523 -10.535 -6.168 -0.563 -11.528 -8.919 -8.926 ML 71 69 6 74 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 A U = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -4.365 -4.484 -10.306 3.868 -11.367 -12.850 -6.964 -10.262 -9.906 -5.530 -10.535 -6.177 -0.723 -1.822 -2.810 -2.123 ML 77 75 6 80 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.190 -0.003 -8.852 1.860 -3.843 -7.601 -1.761 D 83 81 6 84 3 0 0 17 35 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 14 33 -14.187 -0.575 -1.605 1.831 -3.545 -2.534 -2.447 D 86 84 3 87 3 0 0 15 34 -7.440 -2.953 -0.209 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - u - + - ML 88 87 3 90 3 1 1 13 32 -13.613 -1.371 -0.705 -0.882 0.684 -6.798 0.881 D 89 87 3 90 3 0 0 12 30 -14.015 -9.528 -0.002 IL 90 90 3 90 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 13 31 -12.242 -5.346 -0.036 0.032 0.393 -4.882 0.705 D 92 90 3 93 3 0 0 12 30 -15.179 -1.738 -0.514 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 13 31 -12.061 -0.001 -10.715 1.310 -0.953 -1.885 -0.446 D 95 93 3 96 3 0 0 10 28 -15.237 -2.914 -0.205 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - + - ML 97 96 3 99 3 1 1 11 30 -12.594 -1.878 -0.458 1.290 -0.446 -1.871 -0.867 D 98 96 3 99 3 0 0 9 27 -15.033 -10.546 -0.001 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - c - + - ML 100 99 3 102 3 1 1 8 16 -2.142 -0.374 -9.373 -4.034 0.973 -5.070 0.961 D 101 99 3 102 3 0 0 4 11 -15.475 -0.002 -9.867 IL 102 102 3 102 3 1 1 8 15 -3.625 -0.142 -6.325 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.800 -1.719 -5.261 -2.413 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 1.910 -4.534 -2.353 -8.139 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.427 -7.627 -8.777 -10.571 -0.847 -9.692 -10.530 -7.599 -10.650 -9.794 3.912 -10.943 -2.412 -2.440 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 A U = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.096 -8.756 -2.130 3.699 -12.424 -13.559 -7.879 -10.334 -9.852 0.418 -10.521 -0.542 -0.598 -11.587 -9.711 -3.463 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 A U = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -2.172 -10.294 3.722 -12.434 -13.588 -7.892 -10.337 -9.854 1.351 -10.524 -6.045 -7.817 -11.599 -9.723 -8.892 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 C G = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -1.109 -10.571 3.863 -9.692 -10.530 -7.600 -10.650 -9.796 -0.772 -10.943 -1.389 -9.332 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 0.251 -10.571 0.823 -9.692 -10.530 -7.599 -10.650 -9.795 3.534 -10.943 0.528 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.454 -3.502 -10.308 1.967 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -9.188 -2.543 -10.011 1.936 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -9.045 -1.636 -9.855 1.878 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - C - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -10.276 1.999 -10.915 -8.979 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.852 -9.184 -1.372 -9.012 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.718 -7.368 -2.254 -1.016 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 7 49 68 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 7 49 68 -14.190 -0.065 -4.500 1.978 -9.903 -9.353 -4.115 D 167 165 2 168 3 0 5 48 67 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 7 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - + - ML 169 168 3 171 2 1 6 48 67 -14.778 -0.000 1.514 -3.979 -0.099 -2.759 D 170 168 3 171 2 0 5 47 66 -9.951 -0.001 IL 171 171 3 171 2 1 6 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 5 47 66 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 5 28 47 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - + - ML 231 230 2 233 3 1 6 28 47 -4.170 -0.083 -12.844 -2.425 -6.829 -2.564 1.862 D 232 230 2 233 3 0 0 27 45 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 28 47 -4.854 -0.059 -7.554 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - U - + - ML 234 233 3 236 5 1 5 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 -4.004 -0.955 -7.751 1.773 D 235 233 3 236 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 87 A U = = MP 237 236 3 241 6 2 6 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.451 -9.387 -7.033 3.987 -11.929 -12.307 -8.538 -6.866 -10.339 -6.028 -10.834 -3.394 -8.494 -11.574 -10.080 -6.907 ML 238 236 3 241 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 86 u a = = MP 243 242 6 247 6 2 6 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.945 -11.137 -10.333 -0.499 -8.721 -10.525 2.474 -9.619 -10.415 -7.215 -10.569 -9.350 2.611 -10.820 -0.511 1.540 ML 244 242 6 247 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 85 A U = = MP 249 248 6 253 6 2 4 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 0.685 -10.294 3.771 -12.435 -13.590 -7.893 -10.336 -9.854 -0.831 -10.524 -4.155 -7.818 -11.599 -9.724 -3.260 ML 250 248 6 253 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 84 G C = = MP 255 254 6 259 6 2 2 20 39 -14.078 -14.017 -0.004 -12.794 -13.073 -8.581 -11.428 0.522 -12.414 0.908 -13.335 -10.062 -7.928 -12.309 -9.976 3.663 -10.251 -6.459 -8.201 -10.431 -10.242 -11.106 ML 256 254 6 259 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 83 G C = = MP 261 260 6 265 4 2 2 18 37 -13.276 -13.483 -0.184 -3.062 -11.520 -1.617 -12.632 0.810 -13.383 -10.001 -7.923 -12.499 -9.978 3.791 -10.235 -3.827 -8.213 -10.392 -10.262 -11.347 ML 262 260 6 265 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 264 260 6 265 4 0 0 21 40 -5.740 -5.421 -0.625 -1.691 IL 265 265 5 265 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - U - + - ML 267 266 6 269 3 1 1 15 34 -14.007 -0.000 -12.661 -2.761 -0.886 -4.885 1.713 D 268 266 6 269 3 0 0 15 33 -12.556 -0.012 -6.948 IL 269 269 3 269 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - U - + - ML 270 269 3 272 3 1 1 14 32 -14.190 -0.005 -8.205 -3.641 -1.967 0.467 1.190 D 271 269 3 272 3 0 0 17 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - A - + - ML 273 272 3 275 3 1 1 13 31 -14.185 -0.000 -12.840 1.294 -1.039 -1.997 -0.302 D 274 272 3 275 3 0 0 15 34 -7.875 -0.344 -2.267 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - A - + - ML 276 275 3 278 3 1 1 11 29 -5.939 -0.024 -12.844 1.649 -2.226 -1.903 -1.383 D 277 275 3 278 3 0 0 14 32 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 12 30 -3.377 -0.170 -6.077 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - A - + - ML 279 278 3 281 3 1 1 10 28 -14.190 -0.000 -12.844 1.897 -3.287 -4.549 -2.946 D 280 278 3 281 3 0 0 14 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - A - + - ML 282 281 3 284 3 1 1 6 12 -4.134 -0.226 -3.510 1.211 -0.056 -1.607 -1.341 D 283 281 3 284 3 0 0 5 10 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 6 12 -4.887 -0.057 -7.587 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.278 0.994 -3.731 0.788 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Asp LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Mon Apr 13 15:00:58 2015 COM [1] cmbuild --hand --enone Ala_model.cm aligntRNAdb-Asp.sto NSEQ 282 EFFN 5.271149 CKSUM 3961600854 STATS LOCAL MSV -9.0164 0.71867 STATS LOCAL VITERBI -9.6432 0.71867 STATS LOCAL FORWARD -3.1886 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.13826 1.69258 1.67185 1.17870 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 0.00000 * 1 1.38087 2.74828 0.50044 2.54677 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 2 0.11086 4.27534 2.61890 4.00944 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 3 1.99198 3.39929 0.23373 3.25445 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 4 0.80129 2.92529 0.83605 2.74603 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 5 2.15186 1.56128 2.07846 0.60012 5 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 6 0.94390 2.21131 1.06146 1.86186 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 7 3.11739 2.05967 2.89457 0.25759 7 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 8 3.58959 3.40272 4.13201 0.08006 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 9 0.05346 4.25161 3.89484 4.04742 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.03712 3.70898 4.42781 0.79328 0.60214 1.09861 0.40547 10 2.65400 3.71629 0.13062 3.58443 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03712 4.42781 3.70898 1.46634 0.26236 1.09861 0.40547 11 2.18624 2.07845 2.66191 0.36713 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02448 4.41517 4.41517 1.46634 0.26236 0.68039 0.70607 12 0.19487 3.30340 2.52646 2.80749 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 13 0.20168 3.09691 2.55175 2.82158 14 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 14 0.23108 2.82861 3.00556 2.32565 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02571 4.42781 4.30906 1.46634 0.26236 1.09861 0.40547 15 0.28175 2.69154 2.50368 2.34360 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.31146 4.42630 1.36388 1.46634 0.26236 1.13978 0.38550 16 1.59762 1.16818 2.40471 0.92533 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.57176 4.14697 0.86832 1.46634 0.26236 3.15723 0.04347 17 1.30014 1.41180 2.04548 1.03709 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.63399 3.62972 0.81417 1.46634 0.26236 1.19787 0.35930 18 0.89987 1.74107 1.85448 1.34128 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.05748 3.57805 3.57805 1.46634 0.26236 1.93668 0.15570 19 0.86846 1.67861 1.89717 1.41150 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.51449 3.74121 0.97161 1.46634 0.26236 3.79771 0.02268 20 1.49719 1.28265 1.98393 1.01773 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.12797 2.48469 3.30310 0.72818 0.65930 0.03416 3.39369 21 0.30611 2.32198 2.78712 2.26322 23 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 22 3.08911 2.66442 2.89084 0.18719 24 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 23 2.92458 2.86094 3.10490 0.16928 25 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 24 0.40607 2.88032 1.91426 2.03894 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 25 3.75097 0.20332 3.52400 2.03249 27 C = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 26 0.16883 3.23384 2.62301 3.13838 28 A + - , 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 27 3.66440 2.22758 3.45670 0.18025 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 28 0.66647 2.45972 1.26122 2.13948 30 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 29 0.42493 3.35312 1.31789 3.13475 31 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 30 3.52271 0.20989 3.32975 2.08746 32 C = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 31 2.77019 1.31801 2.57587 0.52156 33 U = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 32 3.21391 2.83657 3.73462 0.13092 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 33 3.08139 2.58232 3.59921 0.16115 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 34 3.66573 4.64719 0.05179 4.18029 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 35 2.94782 2.27906 3.46734 0.20584 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 36 4.01127 0.06520 4.51046 3.38079 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 37 0.20091 3.38593 2.24710 3.15914 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 38 0.37831 2.66824 2.34323 1.89985 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 39 0.59425 2.74742 1.18545 2.54691 41 A = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 40 2.25742 3.49162 0.18923 3.28780 42 G = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 41 3.35343 1.42566 3.14555 0.38325 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 42 2.35789 1.46141 2.21254 0.57261 44 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 43 0.21527 3.62277 2.04723 3.27356 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 44 0.07949 3.88110 3.66412 3.50119 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.05826 4.42781 3.10890 1.46634 0.26236 1.09861 0.40547 45 0.53186 2.54086 1.54784 2.11208 47 A + - , 1.38629 1.38629 1.38629 1.38629 1.39882 4.39455 0.30007 1.46634 0.26236 1.74735 0.19145 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 47 1.80309 1.30591 1.07726 1.49720 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 48 1.80078 1.30662 1.07812 1.49674 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 49 1.79976 1.30693 1.07850 1.49653 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 50 1.79937 1.30705 1.07864 1.49645 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 51 1.79929 1.30707 1.07868 1.49644 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 52 1.79935 1.30705 1.07865 1.49645 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 53 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 54 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 55 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 57 1.73059 1.22006 1.16198 1.53831 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 58 1.73049 1.22011 1.16202 1.53828 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 59 1.73047 1.22012 1.16203 1.53827 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 60 1.73059 1.22007 1.16198 1.53831 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 61 1.73097 1.21990 1.16184 1.53842 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 62 1.73182 1.21954 1.16153 1.53867 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.17050 0.01557 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03138 3.47735 64 2.35246 2.64744 2.74986 0.26124 66 U + - , 1.38629 1.38629 1.38629 1.38629 0.06728 2.93517 4.42781 0.40144 1.10672 1.09861 0.40547 65 2.55290 1.97274 3.15925 0.30028 68 U + - , 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 66 0.10451 4.29220 2.68727 4.04612 69 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 67 2.10694 1.11513 2.05650 0.86129 70 u = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 68 0.27991 3.38075 1.81472 3.05244 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 69 1.71145 3.14063 0.32040 2.99007 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.02613 4.42781 4.27951 1.46634 0.26236 1.09861 0.40547 70 1.98842 3.30900 0.24296 3.16451 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.11929 4.42590 2.29769 1.46634 0.26236 1.00223 0.45738 71 2.22056 1.87984 2.82824 0.38607 74 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02655 4.33530 4.33530 1.46634 0.26236 0.21358 1.64864 72 1.86305 2.03797 1.36596 0.77789 75 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02665 4.42781 4.24362 1.46634 0.26236 1.09861 0.40547 73 0.74349 1.85500 2.09198 1.40791 76 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02423 4.42539 4.42539 1.46634 0.26236 0.97966 0.47071 74 0.46829 2.25231 2.20669 1.84070 77 A + - _ 1.38629 1.38629 1.38629 1.38629 0.03660 3.72971 4.42781 0.80750 0.59054 1.09861 0.40547 75 0.20398 2.83991 2.92823 2.62287 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 76 0.77589 1.56751 2.02974 1.61058 80 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14058 2.91561 2.56423 0.39439 1.12114 1.09861 0.40547 77 1.93385 0.94181 2.55961 0.94636 82 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02797 4.36056 4.21226 1.46634 0.26236 0.27020 1.44064 78 3.39784 0.26761 3.12731 1.84824 83 C = - > 1.38629 1.38629 1.38629 1.38629 0.02422 4.42590 4.42590 1.46634 0.26236 1.00223 0.45738 79 3.23408 0.30912 2.95432 1.74640 84 C = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 80 3.35306 1.65322 3.16825 0.31264 85 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 81 1.20530 2.23155 0.96594 1.54924 86 g = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 82 4.23461 3.14276 4.07351 0.07760 87 U = - > 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 83 0.30710 3.02245 1.85818 2.81698 88 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 84 2.10922 1.18486 2.02341 0.81945 89 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 85 0.69868 2.23419 1.36938 1.95604 90 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 86 2.99101 0.98508 2.72790 0.67139 91 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 87 3.48661 0.26626 3.22161 1.81240 92 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 88 4.21908 3.10918 4.07746 0.07937 93 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 89 2.85655 0.66699 2.55812 1.04461 94 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02417 4.42781 4.42781 1.46634 0.26236 1.09861 0.40547 90 1.14196 1.60049 2.36585 0.95415 95 u + - : 1.38629 1.38629 1.38629 1.38629 0.01216 4.41580 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Asp.cm0000644000543100007160000017240312573631650021131 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Asp-2nd-align STATES 289 NODES 76 CLEN 90 W 102 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Asp-final-vert.cm ../Asp-2nd-align.sto COM [2] cmcalibrate --seed 208 Asp-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1087 EFFN 1087.000000 CKSUM 2994548020 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.2968 0.71862 ECMLC 0.64583 -6.50074 3.09444 1600000 589460 0.002036 ECMGC 0.30246 -41.21396 -25.15860 1600000 51413 0.007780 ECMLI 0.64636 -5.95003 3.51525 1600000 544719 0.002203 ECMGI 0.31093 -37.94886 -22.49717 1600000 48820 0.008193 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 130 -15.014 -16.260 -0.000 -12.713 IL 1 1 2 1 4 14 36 103 132 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 37 104 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 103 - A - + MR 3 2 3 5 5 21 44 102 130 -15.063 -0.000 -14.879 -15.091 -15.982 1.216 -1.788 -0.883 -0.243 D 4 2 3 5 5 11 34 101 129 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 14 36 102 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 102 A U = = MP 6 5 3 10 6 22 43 101 129 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -4.383 -4.730 -9.888 3.079 -11.031 -4.683 -6.100 -4.449 -10.306 2.413 -10.564 0.791 -2.031 -9.757 -8.106 -4.208 ML 7 5 3 10 6 13 35 99 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 13 35 99 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 10 31 97 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 13 36 101 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 14 36 100 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 101 A U = = MP 12 11 6 16 6 21 42 99 127 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -12.039 -2.895 -12.235 3.854 -3.420 -15.529 -9.831 -12.277 -11.795 0.013 -12.465 -4.343 -2.780 -13.540 -11.662 -3.188 ML 13 11 6 16 6 12 35 97 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 12 35 97 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 31 95 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 13 36 99 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 13 36 98 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 100 G C = = MP 18 17 6 22 6 20 40 97 125 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -13.042 -1.532 -13.645 0.982 -14.295 -3.726 -9.007 -14.066 -11.745 3.709 -11.945 -1.423 -3.183 -4.786 -11.230 -12.632 ML 19 17 6 22 6 12 35 95 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 12 34 95 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 30 93 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 13 35 97 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 13 36 96 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 99 A U = = MP 24 23 6 28 6 18 38 95 123 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -1.546 0.092 -9.830 3.203 -10.966 -3.979 -1.908 -4.679 -5.750 2.141 -10.511 -1.286 -6.298 -9.691 -8.041 -2.657 ML 25 23 6 28 6 12 34 93 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 12 34 93 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 9 30 91 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 13 35 95 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 13 35 94 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 98 u a = = MP 30 29 6 34 6 16 36 93 121 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -3.114 -3.981 -9.333 -0.294 0.093 -6.317 2.602 -3.568 -5.979 -1.952 -9.850 -7.233 2.746 -5.460 -1.261 -1.558 ML 31 29 6 34 6 12 33 92 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 12 33 91 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 29 89 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 12 34 93 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 13 34 92 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 97 A U = = MP 36 35 6 40 6 14 34 91 119 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -9.180 -2.471 -3.727 3.018 -1.701 -6.209 1.118 -6.869 -9.430 1.890 -9.837 -2.835 -0.405 -3.648 -5.311 -1.219 ML 37 35 6 40 6 11 32 90 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 11 31 90 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 9 29 88 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 12 33 91 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 12 33 90 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 96 U A = = MP 42 41 6 46 4 12 32 89 117 -15.220 -15.427 -0.000 -13.841 -13.049 -13.330 -12.366 -9.566 -10.717 -5.018 2.778 -11.632 -12.470 -9.538 -3.608 -11.734 3.132 -4.885 -2.953 -3.439 ML 43 41 6 46 4 10 31 89 117 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 10 30 88 116 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 9 29 87 115 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 32 90 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 31 89 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 10 30 87 115 -16.130 -0.000 -14.784 -12.779 -5.229 -13.968 1.990 D 49 47 6 50 3 9 28 86 114 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 30 88 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 9 29 86 114 -5.971 -0.023 1.976 -11.958 -3.963 -11.363 D 52 50 3 53 2 8 28 85 113 -8.445 -0.004 IL 53 53 3 53 2 9 29 86 114 -6.110 -0.021 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 28 85 113 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 49 67 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 49 67 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 31 49 -0.000 -14.125 -13.532 -14.172 [ MATP 15 ] 11 31 G C = = MP 58 57 1 62 6 2 3 31 49 -15.997 -15.937 -0.023 -14.713 -5.977 -15.388 -13.730 -10.562 -15.381 -2.174 -15.464 -11.792 -9.855 -15.091 -11.916 3.920 -12.132 -0.652 -10.191 -12.233 -12.264 -14.213 ML 59 57 1 62 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 30 U A = = MP 64 63 6 68 6 2 3 29 47 -15.974 -15.913 -0.000 -14.690 -14.970 -15.365 -13.019 -13.273 -12.343 -1.571 -3.851 -12.494 -6.412 -11.612 -12.443 -9.492 -12.567 -11.629 3.936 -12.863 -1.857 -11.247 ML 65 63 6 68 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 28 46 -11.493 -10.222 -0.044 -10.200 -5.334 -8.414 1.982 -6.258 -5.647 -5.859 D 67 63 6 68 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 29 A U = = MP 70 69 6 74 6 2 3 27 45 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -1.706 -2.507 -4.887 3.843 -14.224 -15.436 -3.212 -12.269 -11.800 -1.538 -12.466 -7.998 -0.801 -13.532 -11.552 -3.281 ML 71 69 6 74 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 24 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 28 A U = = MP 76 75 6 80 4 2 3 25 43 -15.220 -15.427 -0.000 -13.841 -3.034 -2.683 -4.485 3.855 -13.964 -4.822 -9.484 -2.883 -3.679 -2.296 -12.466 -8.023 -2.179 -4.596 -4.530 -1.156 ML 77 75 6 80 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 2 23 41 -16.130 -0.001 -11.143 1.908 -4.254 -9.891 -2.376 D 83 81 6 84 3 0 0 21 40 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - A - + - ML 85 84 3 87 3 1 1 22 40 -16.129 -0.144 -3.398 1.642 -1.495 -2.412 -1.569 D 86 84 3 87 3 0 0 20 39 -7.230 -2.743 -0.245 IL 87 87 3 87 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - u - + - ML 88 87 3 90 3 1 1 21 39 -15.985 -0.880 -1.131 -0.282 0.576 -5.465 0.735 D 89 87 3 90 3 0 0 19 38 -14.162 -9.675 -0.002 IL 90 90 3 90 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - + - ML 91 90 3 93 3 1 1 20 38 -4.569 -2.491 -0.358 0.318 -0.114 -8.344 0.869 D 92 90 3 93 3 0 0 19 38 -16.573 -1.140 -0.873 IL 93 93 3 93 3 1 1 21 39 -5.329 -0.042 -8.029 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 1 20 38 -14.569 -0.009 -7.396 1.117 -1.251 0.283 -2.369 D 95 93 3 96 3 0 0 17 36 -16.952 -2.220 -0.349 IL 96 96 3 96 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - g - + - ML 97 96 3 99 3 1 1 19 37 -15.067 -0.463 -1.865 0.495 -1.389 0.783 -1.035 D 98 96 3 99 3 0 0 14 32 -16.610 -8.029 -0.006 IL 99 99 3 99 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - u - + - ML 100 99 3 102 3 1 1 18 37 -0.593 -1.569 -13.266 -0.387 0.661 -7.802 0.722 D 101 99 3 102 3 0 0 14 32 -5.821 -0.026 -11.321 IL 102 102 3 102 3 1 1 18 36 -1.438 -0.665 -12.152 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.925 -3.218 -5.919 -3.652 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.130 -0.000 -14.784 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - A - + - ML 109 108 2 111 5 1 1 26 45 -15.063 -0.000 -14.879 -15.091 -15.982 1.809 -2.273 -2.199 -3.826 D 110 108 2 111 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 50 U A = = MP 112 111 3 116 6 2 2 25 44 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -1.848 -5.092 -6.361 -0.600 -0.058 -11.133 2.013 -4.227 -10.148 -2.233 -10.662 -4.309 3.261 -10.471 -3.735 -4.526 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 49 a u = = MP 118 117 6 122 6 2 2 23 42 -15.997 -6.172 -0.020 -14.713 -14.993 -15.388 -6.789 -9.665 -4.030 2.774 -3.678 -4.326 0.673 -9.613 -9.818 0.575 -10.344 -1.298 2.403 -10.067 -3.184 -3.987 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 22 41 -5.839 -0.039 -9.350 -7.518 -8.624 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 47 G C = = MP 124 123 6 128 6 2 2 21 40 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -3.172 -1.214 -9.784 2.535 -10.915 -4.114 -1.945 -10.475 -10.223 3.169 -10.469 -4.655 -2.627 -4.335 -3.405 -8.750 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 46 C G = = MP 130 129 6 134 6 2 2 19 38 -15.997 -15.937 -0.000 -14.713 -14.993 -15.388 -2.081 -12.884 -4.980 -8.986 0.335 -4.307 3.680 -4.072 -5.088 -3.120 -12.438 -10.986 0.120 -12.655 -1.716 -11.044 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 45 C G = = MP 136 135 6 140 4 2 2 17 35 -15.220 -15.427 -0.000 -13.841 -12.893 -3.714 -4.326 -9.249 0.633 -4.261 3.058 -1.739 -12.360 -9.174 -12.512 -11.314 1.552 -1.375 1.113 -2.673 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.130 -0.000 -14.784 -12.181 -0.566 -13.180 1.733 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.130 -0.000 -14.784 -9.145 -3.325 -5.663 1.956 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.130 -0.000 -14.784 -5.261 -12.433 1.990 -11.406 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - U - * - ML 151 150 3 153 3 1 1 10 29 -16.130 -0.000 -14.784 -12.453 -3.754 -13.525 1.973 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - C - * - ML 154 153 3 156 3 1 1 9 28 -16.130 -0.000 -14.784 -12.736 2.000 -13.624 -11.113 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.130 -0.000 -14.784 1.856 -5.856 -1.466 -10.602 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.558 -5.254 -0.485 -1.669 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 2 51 80 -16.130 -0.000 -14.784 IL 165 165 2 165 3 1 3 54 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - + - ML 166 165 2 168 3 1 2 51 80 -16.130 -0.000 -14.784 1.944 -5.146 -5.008 -3.439 D 167 165 2 168 3 0 0 50 78 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 2 53 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - A - + - ML 169 168 3 171 2 1 1 50 79 -16.785 -0.000 1.696 -5.313 -0.576 -3.952 D 170 168 3 171 2 0 0 49 78 -8.445 -0.004 IL 171 171 3 171 2 1 1 51 79 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 49 78 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.821 -14.125 -13.532 -0.007 [ MATP 48 ] 53 70 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 69 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 68 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 56 67 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 57 66 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 58 65 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.011 -18.710 -14.507 -15.189 -15.206 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 59 64 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.433 -15.115 -4.259 -0.077 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - U - + - ML 216 215 6 218 3 1 1 13 32 -11.912 -0.001 -10.566 -8.103 -7.267 -9.144 1.996 D 217 215 6 218 3 0 0 8 26 -17.469 -12.982 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.912 -0.001 -10.566 -8.103 -7.267 -9.144 1.996 D 220 218 3 221 3 0 0 7 25 -17.469 -12.982 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - A - + - ML 222 221 3 224 3 1 1 10 29 -11.912 -0.001 -10.566 1.994 -8.039 -7.309 -7.444 D 223 221 3 224 3 0 0 5 24 -17.469 -12.982 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - C - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -7.411 1.992 -7.882 -6.439 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 40 68 -16.130 -0.044 -5.070 IL 230 230 2 230 3 1 1 42 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - U - + - ML 231 230 2 233 3 1 4 40 68 -4.179 -0.082 -14.740 -1.373 -8.739 -3.875 1.825 D 232 230 2 233 3 0 0 39 68 -0.264 -8.008 -2.615 IL 233 233 3 233 3 1 1 40 68 -7.181 -0.012 -9.881 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - U - + - ML 234 233 3 236 5 1 4 39 67 -15.057 -0.000 -14.872 -15.084 -15.976 -1.450 -0.404 -9.629 1.524 D 235 233 3 236 5 0 0 34 62 -7.952 -3.796 -7.214 -5.588 -0.158 IL 236 236 3 236 5 1 1 39 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 74 95 A U = = MP 237 236 3 241 6 2 5 38 66 -15.991 -15.930 -0.000 -14.706 -14.986 -15.381 -12.042 -5.896 -12.241 3.251 -14.376 -15.356 -9.827 -12.283 -11.789 2.517 -12.454 -0.440 -9.755 -13.512 -11.662 -10.839 ML 238 236 3 241 6 1 1 36 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 36 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 30 58 -12.415 -11.113 -6.910 -7.592 -7.609 -0.028 IL 241 241 5 241 6 1 1 37 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 37 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 75 94 c g = = MP 243 242 6 247 6 2 4 36 64 -15.991 -15.930 -0.000 -14.706 -14.986 -15.381 -13.030 -13.304 -12.353 -2.484 -4.842 -12.501 2.795 -11.620 -12.455 -9.500 -12.577 -11.690 2.059 -12.867 1.762 0.360 ML 244 242 6 247 6 1 1 34 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 34 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 28 56 -12.415 -11.113 -6.910 -7.592 -7.609 -0.028 IL 247 247 5 247 6 1 1 35 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 35 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 76 93 A U = = MP 249 248 6 253 6 2 2 34 62 -15.991 -15.930 -0.100 -14.706 -14.986 -3.901 -3.313 -1.755 -9.801 3.287 -10.934 -10.401 -2.369 -10.488 -10.235 2.239 -10.484 -3.085 -2.315 -9.658 -3.603 -0.949 ML 250 248 6 253 6 1 1 32 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 32 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 27 55 -12.415 -11.113 -6.910 -7.592 -7.609 -0.028 IL 253 253 5 253 6 1 1 33 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 33 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 77 92 G C = = MP 255 254 6 259 6 2 2 32 60 -15.891 -15.830 -0.031 -14.606 -6.763 -6.388 -2.491 -0.718 -13.310 1.194 -14.855 -12.288 -9.740 -13.294 -11.763 3.691 -12.139 -8.156 -9.909 -12.485 -11.905 -11.944 ML 256 254 6 259 6 1 1 30 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 6 259 6 1 1 30 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 27 55 -16.219 -14.918 -10.715 -11.397 -11.414 -0.002 IL 259 259 5 259 6 1 1 31 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 31 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 78 91 G C = = MP 261 260 6 265 4 2 2 30 58 -15.082 -15.289 -0.039 -5.248 -12.398 -1.889 -4.094 -0.686 -14.553 -12.687 -2.739 -12.798 -11.699 3.895 -12.159 -5.747 -9.736 -12.642 -11.690 -11.395 ML 262 260 6 265 4 1 1 29 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 4 1 1 28 56 -8.662 -7.691 -5.558 -0.042 0.604 1.009 -2.780 -1.635 D 264 260 6 265 4 0 0 27 55 -11.849 -11.530 -6.470 -0.017 IL 265 265 5 265 4 1 1 30 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 30 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 2 28 56 -4.162 -0.083 -14.609 -2.039 -1.694 -5.752 1.778 D 268 266 6 269 3 0 0 27 55 -14.424 -0.114 -3.716 IL 269 269 3 269 3 1 1 28 56 -6.528 -0.018 -9.228 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - U - + - ML 270 269 3 272 3 1 1 27 55 -16.117 -0.011 -7.007 -3.199 -1.831 -0.538 1.547 D 271 269 3 272 3 0 0 25 54 -10.728 -0.244 -2.687 IL 272 272 3 272 3 1 1 28 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - A - + - ML 273 272 3 275 3 1 1 26 54 -16.117 -0.000 -14.771 1.395 -0.575 -2.554 -0.919 D 274 272 3 275 3 0 0 25 53 -10.780 -0.041 -5.171 IL 275 275 3 275 3 1 1 27 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - ML 276 275 3 278 3 1 1 25 53 -5.519 -0.059 -5.786 1.697 -2.946 -0.960 -3.142 D 277 275 3 278 3 0 0 22 51 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 25 53 -5.399 -0.040 -8.099 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - A - + - ML 279 278 3 281 3 1 1 24 52 -16.103 -0.000 -14.757 1.887 -2.471 -5.195 -3.436 D 280 278 3 281 3 0 0 19 48 -11.789 -3.285 -0.157 IL 281 281 3 281 3 1 1 25 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - a - + - ML 282 281 3 284 3 1 1 23 51 -4.491 -0.142 -4.351 0.628 0.517 -1.389 -0.640 D 283 281 3 284 3 0 0 14 42 -11.643 -3.761 -0.111 IL 284 284 3 284 3 1 1 26 55 -0.934 -1.072 -10.108 0.000 0.000 0.000 0.000 [ MATL 74 ] 90 - C - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.225 1.466 -4.301 -0.041 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Asp-2nd-align LENG 90 MAXL 163 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Asp-final-vert.cm ../Asp-2nd-align.sto NSEQ 1087 EFFN 10.801830 CKSUM 2994548020 STATS LOCAL MSV -8.8747 0.71862 STATS LOCAL VITERBI -9.3740 0.71862 STATS LOCAL FORWARD -3.2512 0.71862 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16479 1.60570 1.62022 1.23992 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 0.00000 * 1 1.00148 2.81567 0.69844 2.58440 1 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 2 0.11533 4.06644 2.67028 3.79177 2 A = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 3 1.76488 2.96743 0.33435 2.78787 3 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 4 0.86261 2.49157 0.90734 2.39071 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 5 1.96600 1.04568 2.03920 0.97181 5 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 6 1.07446 1.63790 1.30673 1.64287 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 7 2.81420 0.92819 2.52180 0.76687 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 8 4.13295 3.69080 4.66298 0.05174 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 9 0.04343 4.69005 3.78392 4.54902 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02813 3.88282 4.94143 0.59094 0.80700 1.09861 0.40547 10 3.38773 4.76530 0.05283 4.69416 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.02813 4.94143 3.88282 1.46634 0.26236 1.09861 0.40547 11 4.38989 3.55645 4.97810 0.04901 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.01459 4.92789 4.92789 1.46634 0.26236 0.52702 0.89248 12 0.14467 3.62082 2.71341 3.17918 13 A = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 13 0.01268 5.57618 5.45885 5.39193 14 A = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 14 0.12230 3.38024 3.74999 2.85486 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.94143 4.89450 1.46634 0.26236 1.09861 0.40547 15 0.36616 2.23557 2.57410 2.09187 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09912 4.94109 2.43938 1.46634 0.26236 1.11450 0.39761 16 1.51120 1.09564 2.76758 0.96177 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.50204 4.85763 0.94949 1.46634 0.26236 2.65685 0.07275 17 1.23544 1.48685 2.39218 0.93706 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.97504 3.14372 0.54524 0.50477 0.92545 0.80246 0.59462 18 0.85851 1.93646 1.39412 1.69314 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03678 4.12473 3.91480 1.46634 0.26236 1.51897 0.24710 19 1.13025 1.96653 1.11625 1.56256 21 g + - _ 1.38629 1.38629 1.38629 1.38629 0.23474 4.36154 1.62728 1.46634 0.26236 3.79257 0.02280 20 1.47168 1.17734 2.37299 0.99652 22 u + - _ 1.38629 1.38629 1.38629 1.38629 0.62771 0.79703 4.16566 0.49015 0.94813 0.02580 3.67040 21 0.11687 3.16770 3.60847 3.19153 27 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 22 5.50600 5.64057 5.38583 0.01227 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 23 3.20365 2.82144 3.40342 0.14317 29 U = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 24 0.06489 4.92270 3.24352 4.10290 30 A = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 25 4.73849 0.09121 4.59261 2.68388 31 C = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 26 0.21629 2.67400 2.64651 2.90731 32 A + - , 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 27 2.10369 1.17577 2.14876 0.79234 33 u = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 28 1.20464 1.62100 1.68999 1.14577 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 29 1.20235 2.72340 0.58133 2.59418 35 G = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 30 2.40524 0.50201 2.26867 1.60449 36 C = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 31 2.01553 0.89905 2.00625 1.12301 37 c = - < 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 32 3.50391 1.85070 4.03563 0.22926 38 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 33 3.46133 2.98484 3.81552 0.10977 39 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 34 4.07215 5.38763 0.02989 4.84979 40 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 35 3.89868 3.27129 4.41518 0.07291 41 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 36 4.83169 0.02891 5.19951 4.19952 42 C * - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 37 0.15200 3.81818 2.33297 3.81513 43 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 38 0.40910 2.99432 1.75913 2.17606 44 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 39 1.34696 2.06962 0.79985 1.80582 45 g = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 40 1.57182 2.43064 0.50875 2.27200 46 G = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 41 2.84504 0.60955 2.54168 1.14088 47 C = - > 1.38629 1.38629 1.38629 1.38629 0.02638 3.96886 4.94143 0.63709 0.75253 1.09861 0.40547 42 1.26656 1.86518 1.47017 1.09827 49 u = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 43 0.79352 2.31857 1.16620 1.98204 50 a = - > 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 44 0.09166 3.68133 3.63067 3.32703 51 A + - , 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 45 0.27919 3.40427 1.80749 3.07238 52 A + - , 1.38629 1.38629 1.38629 1.38629 1.94570 4.94143 0.16256 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 47 1.80287 1.30597 1.07734 1.49716 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 48 1.80042 1.30672 1.07825 1.49666 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 49 1.79932 1.30707 1.07867 1.49644 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 50 1.79887 1.30720 1.07883 1.49635 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 51 1.79874 1.30724 1.07888 1.49632 58 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 52 1.79876 1.30724 1.07887 1.49633 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.82844 0.06092 53 1.66984 1.82810 2.11688 0.63375 60 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07370 3.33755 3.33755 1.46634 0.26236 4.74337 0.00875 54 1.66984 1.82810 2.11688 0.63375 61 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07370 3.33755 3.33755 1.46634 0.26236 4.74337 0.00875 55 0.52759 2.18764 2.00872 1.81011 62 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07370 3.33755 3.33755 1.46634 0.26236 4.74337 0.00875 56 1.65586 0.77263 2.16422 1.45914 63 c + - _ 1.38629 1.38629 1.38629 1.38629 0.34181 3.33755 1.37044 1.46634 0.26236 4.74337 0.00875 57 1.73004 1.22030 1.16218 1.53815 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 58 1.72998 1.22033 1.16221 1.53813 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 59 1.73000 1.22032 1.16220 1.53814 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 60 1.73019 1.22024 1.16213 1.53819 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 61 1.73066 1.22004 1.16196 1.53833 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 62 1.73163 1.21962 1.16160 1.53862 69 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.79554 0.00830 63 1.73350 1.21882 1.16092 1.53917 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02131 3.85924 64 2.30182 3.15839 3.32408 0.19672 71 U + - , 1.38629 1.38629 1.38629 1.38629 0.06159 2.94584 4.93749 0.25363 1.49600 1.26710 0.33079 65 2.15631 1.68349 3.32885 0.41145 73 U + - , 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 66 0.66608 3.81701 0.82834 3.59295 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 67 2.69414 0.92364 2.55982 0.78087 75 u = - < 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 68 0.87704 2.70031 0.86539 2.34431 76 g = - < 1.38629 1.38629 1.38629 1.38629 0.07375 4.93749 2.75013 1.46634 0.26236 1.26710 0.33079 69 1.62353 3.08847 0.35117 2.93062 77 G = - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.87907 3.67724 1.46634 0.26236 2.43905 0.09129 70 2.03672 2.95981 0.27093 2.89958 78 G = - < 1.38629 1.38629 1.38629 1.38629 0.03800 4.86122 3.52164 1.46634 0.26236 2.53051 0.08297 71 2.48808 2.34843 3.44987 0.23615 79 U + - _ 1.38629 1.38629 1.38629 1.38629 0.06403 2.91656 4.83994 0.27030 1.44032 0.20064 1.70489 72 2.39942 2.28192 1.91641 0.41550 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02114 4.93425 4.28878 1.46634 0.26236 0.76126 0.62938 73 0.57429 1.77919 2.43582 1.71151 82 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01450 4.93398 4.93398 1.46634 0.26236 0.68351 0.70288 74 0.29972 2.80269 2.04961 2.66580 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04914 3.66740 3.79816 0.48850 0.95074 1.09861 0.40547 75 0.15322 2.82706 3.42274 2.99070 85 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01462 4.92604 4.92604 1.46634 0.26236 1.44585 0.26859 76 1.04476 1.22202 2.04437 1.49553 86 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09780 3.10809 3.02651 0.85060 0.55715 1.47113 0.26093 77 2.32990 0.51071 3.19643 1.34049 90 C + - _ 1.38629 1.38629 1.38629 1.38629 0.07924 4.88645 2.67897 1.46634 0.26236 0.43270 1.04628 78 3.12552 0.30181 2.74629 1.88100 91 C = - > 1.38629 1.38629 1.38629 1.38629 0.01548 4.86902 4.86902 1.46634 0.26236 1.70841 0.19986 79 3.06160 0.36289 2.89582 1.59816 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.01533 4.87907 4.87907 1.46634 0.26236 0.25170 1.50274 80 2.74301 0.92512 2.49102 0.78458 93 u = - > 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 81 1.34685 2.73757 0.60780 2.03509 94 G = - > 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 1.26710 0.33079 82 3.80873 0.96826 3.59806 0.56088 95 U = - > 1.38629 1.38629 1.38629 1.38629 0.01445 4.93749 4.93749 1.46634 0.26236 0.82849 0.57395 83 0.84956 2.70428 0.85276 2.53529 96 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 84 1.86156 1.38411 1.52027 0.97985 97 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 85 1.03729 2.18193 1.01008 1.78037 98 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 86 2.55154 0.92918 2.34478 0.84097 99 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 87 3.06185 0.37010 2.82401 1.59372 100 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 88 4.00368 2.79508 4.00687 0.10264 101 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 89 2.82889 0.87329 2.66825 0.78972 102 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01439 4.94143 4.94143 1.46634 0.26236 1.09861 0.40547 90 0.72400 2.13177 1.87332 1.41489 103 a + - : 1.38629 1.38629 1.38629 1.38629 0.00722 4.93426 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Thr.cm0000644000543100007160000017240412573631650021144 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Thr-2nd-align STATES 289 NODES 76 CLEN 90 W 112 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:59 2015 COM [1] cmbuild --hand --enone Thr-final-vert.cm ../Thr-2nd-align.sto COM [2] cmcalibrate --seed 208 Thr-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1092 EFFN 1092.000000 CKSUM 1485268043 NULL 0.000 0.000 0.000 0.000 EFP7GF -12.6187 0.71859 ECMLC 0.69563 -6.75072 2.13718 1600000 581173 0.002065 ECMGC 0.28879 -39.59025 -23.84142 1600000 37781 0.010587 ECMLI 0.70967 -5.83890 2.68197 1600000 507432 0.002365 ECMGI 0.29633 -35.66417 -20.45817 1600000 36223 0.011043 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 112 157 -15.021 -16.266 -0.001 -10.270 IL 1 1 2 1 4 19 39 113 158 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 41 113 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 123 - u - + MR 3 2 3 5 5 28 49 112 157 -15.069 -0.000 -14.884 -15.096 -15.988 0.431 -0.750 -2.085 0.865 D 4 2 3 5 5 17 36 109 154 -6.226 -1.581 -3.853 -5.284 -0.843 IR 5 5 3 5 5 20 41 112 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 122 G C = = MP 6 5 3 10 6 28 48 111 156 -16.003 -15.942 -0.000 -14.719 -14.998 -15.393 -12.078 -6.656 -12.270 1.065 -14.161 -13.679 -9.435 -12.378 -0.369 3.633 -12.320 -0.663 -9.484 -5.035 -11.365 -4.250 ML 7 5 3 10 6 19 39 109 154 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 19 39 109 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 16 35 103 149 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 10 10 5 10 6 20 40 110 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 20 41 110 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 121 C G = = MP 12 11 6 16 6 27 46 109 154 -16.003 -15.942 -0.000 -14.719 -14.998 -15.393 -12.999 -3.209 -12.341 -9.455 -0.744 -4.218 3.051 -3.315 -12.437 -9.408 -12.568 -11.581 2.540 -5.481 -0.027 -5.081 ML 13 11 6 16 6 19 39 107 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 39 107 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 16 35 101 147 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 16 16 5 16 6 20 40 108 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 20 41 108 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 120 c g = = MP 18 17 6 22 6 26 44 107 152 -16.003 -6.746 -0.014 -14.719 -14.998 -15.393 -7.798 -3.877 -6.594 1.468 -1.169 0.238 2.612 -0.497 -8.031 -0.297 -8.599 -4.128 1.733 -3.058 -1.913 -3.108 ML 19 17 6 22 6 19 39 105 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 39 105 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 16 35 100 145 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 22 22 5 22 6 20 40 106 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 22 43 106 151 -5.333 -0.056 -8.845 -7.012 -8.118 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 118 c g = = MP 24 23 6 28 6 24 42 105 150 -6.189 -15.942 -0.030 -7.210 -14.998 -15.393 -2.665 -4.980 -8.065 -0.710 -0.568 -0.974 2.772 -2.982 -6.186 -0.839 -8.679 -6.565 2.307 -0.927 -0.502 -1.781 ML 25 23 6 28 6 19 38 103 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 19 38 103 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 16 35 99 144 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 28 28 5 28 6 22 41 104 149 -6.666 -6.929 -0.035 -8.584 -9.360 -9.021 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 40 104 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 117 U A = = MP 30 29 6 34 6 22 41 103 148 -15.993 -15.932 -0.000 -14.709 -14.989 -15.384 -1.272 -2.734 -4.509 0.034 -0.727 -4.077 0.366 -3.469 -5.353 -2.534 -8.018 -4.090 3.443 -2.500 -1.121 -0.851 ML 31 29 6 34 6 19 38 100 146 -9.790 -10.136 -4.850 -0.064 -9.986 -7.515 -4.386 1.937 -5.009 -3.458 MR 32 29 6 34 6 18 37 101 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 16 35 98 143 -10.268 -8.967 -4.764 -5.446 -5.463 -0.129 IL 34 34 5 34 6 19 39 102 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 19 39 102 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 116 A U = = MP 36 35 6 40 6 20 39 101 146 -6.122 -15.932 -0.021 -14.709 -14.989 -15.384 -2.415 -4.472 -8.506 3.206 -2.216 -3.806 -2.982 -0.952 -8.662 0.535 -9.156 -3.486 0.362 -1.046 -4.123 1.161 ML 37 35 6 40 6 18 36 99 144 -9.790 -10.136 -4.850 -0.064 -9.986 -7.515 -3.782 -3.445 -4.575 1.924 MR 38 35 6 40 6 17 36 99 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 16 34 97 143 -10.268 -8.967 -4.764 -0.753 -5.463 -1.539 IL 40 40 5 40 6 19 37 100 145 -6.721 -6.984 -0.034 -8.639 -9.415 -9.076 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 18 37 100 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 115 G C = = MP 42 41 6 46 4 18 37 99 144 -15.216 -15.423 -0.001 -10.749 -10.453 -2.073 -10.308 1.208 -11.447 -10.771 -1.388 -10.968 -4.841 3.672 -10.845 -2.473 -3.263 -10.117 -8.519 -9.262 ML 43 41 6 46 4 17 35 98 143 -7.036 -7.218 -0.045 -5.948 1.955 -4.920 -4.371 -4.634 MR 44 41 6 46 4 16 35 97 143 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 15 33 96 142 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 17 36 99 145 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 17 36 98 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 16 35 97 142 -16.136 -0.000 -14.790 -3.477 -11.114 -12.613 1.967 D 49 47 6 50 3 15 33 95 141 -7.411 -0.499 -1.803 IL 50 50 3 50 3 16 35 97 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 15 34 96 141 -16.792 -0.000 1.935 -11.709 -2.519 -11.265 D 52 50 3 53 2 14 33 95 140 -8.445 -0.004 IL 53 53 3 53 2 15 34 96 142 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 14 33 95 140 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 13 63 100 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 13 63 100 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 45 82 -0.000 -14.131 -13.539 -14.179 [ MATP 15 ] 12 36 G C = = MP 58 57 1 62 6 2 3 45 82 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -13.685 -10.570 -15.215 -1.159 -15.445 -11.821 -9.861 -14.963 -11.920 3.910 -12.144 -0.962 -10.190 -12.254 -12.258 -14.014 ML 59 57 1 62 6 1 1 43 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 43 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 40 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 44 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 44 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 35 C G = = MP 64 63 6 68 6 2 3 43 80 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -13.056 -13.338 -12.373 -9.575 -2.969 -12.517 3.177 -11.639 -12.477 -9.546 -12.597 -11.742 2.758 -12.890 -4.073 -11.279 ML 65 63 6 68 6 1 1 41 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 41 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 38 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 42 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 34 U A = = MP 70 69 6 74 6 2 3 41 78 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -13.055 -13.334 -12.373 2.113 -3.452 -12.518 -3.588 -11.639 -12.477 -9.544 -12.597 -11.734 3.493 -12.890 -2.064 -11.279 ML 71 69 6 74 6 1 1 39 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 39 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 37 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 40 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 40 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 33 U A = = MP 76 75 6 80 4 2 2 39 76 -15.227 -15.434 -0.007 -7.638 -1.811 -5.387 -12.349 -9.481 -1.482 -0.876 1.409 -11.620 -4.398 -9.438 -12.575 -11.616 3.228 -5.523 -3.636 1.384 ML 77 75 6 80 4 1 1 38 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 37 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 36 73 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 39 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 39 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 2 37 74 -16.129 -0.000 -14.783 1.991 -12.021 -11.323 -5.441 D 83 81 6 84 3 0 0 34 71 -10.003 -5.516 -0.033 IL 84 84 3 84 3 1 1 38 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 36 73 -16.129 -0.171 -3.165 1.015 -2.386 0.232 -0.706 D 86 84 3 87 3 0 0 34 71 -10.003 -5.516 -0.033 IL 87 87 3 87 3 1 1 37 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - c - + - ML 88 87 3 90 3 1 1 35 72 -15.959 -1.136 -0.876 -0.134 0.789 -5.449 0.420 D 89 87 3 90 3 0 0 34 71 -14.450 -9.963 -0.002 IL 90 90 3 90 3 1 1 35 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 33 71 -2.414 -3.833 -0.430 0.387 0.013 -7.977 0.748 D 92 90 3 93 3 0 0 34 71 -16.813 -0.191 -3.013 IL 93 93 3 93 3 1 1 35 72 -1.291 -2.603 -1.229 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - a - + - ML 94 93 3 96 3 1 1 34 72 -15.331 -0.017 -6.415 0.535 -0.523 0.289 -0.658 D 95 93 3 96 3 0 0 31 68 -16.331 -3.016 -0.190 IL 96 96 3 96 3 1 1 35 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - u - + - ML 97 96 3 99 3 1 1 33 71 -15.443 -0.603 -1.550 0.215 0.070 -2.446 0.683 D 98 96 3 99 3 0 0 30 67 -16.166 -6.359 -0.018 IL 99 99 3 99 3 1 1 35 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - c - + - ML 100 99 3 102 3 1 1 33 70 -1.619 -0.568 -13.511 -0.436 0.779 -8.056 0.624 D 101 99 3 102 3 0 0 30 67 -3.175 -0.170 -11.182 IL 102 102 3 102 3 1 1 34 71 -0.712 -1.360 -12.568 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.946 -4.603 -5.307 -3.622 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.136 -0.000 -14.790 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - a - + - ML 109 108 2 111 5 1 1 26 44 -15.070 -0.000 -14.885 -15.097 -15.989 0.936 -0.730 0.152 -1.423 D 110 108 2 111 5 0 0 26 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 27 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 56 u a = = MP 112 111 3 116 6 2 2 25 43 -6.087 -15.943 -0.022 -14.720 -14.999 -15.394 -11.970 -11.864 -11.672 -2.593 0.138 -12.128 2.617 -3.825 -11.646 -2.658 -11.968 -9.627 2.931 -12.010 -0.432 -10.402 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 24 43 -6.764 -7.026 -0.033 -8.682 -9.458 -9.118 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 40 55 u a = = MP 118 117 6 122 6 2 2 23 41 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -12.020 -11.926 -11.709 -2.958 -3.786 -12.150 2.942 -4.773 -11.688 -3.233 -12.002 -9.702 2.972 -12.054 -4.639 -3.617 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 54 G C = = MP 124 123 6 128 6 2 2 21 39 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -2.473 -3.247 -13.765 -0.531 -15.094 -12.203 -9.855 -13.721 -0.341 3.827 -12.219 -4.674 -10.069 -12.487 -12.085 -12.416 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 42 53 G C = = MP 130 129 6 134 6 2 2 19 37 -16.004 -15.943 -0.000 -14.720 -14.999 -15.394 -10.992 -2.471 -10.898 -0.002 -5.160 -4.655 -7.030 -5.538 -2.558 3.782 -11.165 -1.181 -7.300 -1.518 -9.063 -9.855 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 43 52 U A = = MP 136 135 6 140 4 2 2 17 35 -15.227 -15.434 -0.000 -13.848 -13.024 -4.789 -12.355 -5.017 -0.925 -4.636 0.453 -11.625 -12.455 -9.466 -12.581 -11.649 3.165 -3.127 1.277 1.316 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - C - + - ML 142 141 6 144 3 1 1 14 32 -16.136 -0.000 -14.790 -11.910 1.837 -12.470 -1.228 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.136 -0.000 -14.790 -6.075 -6.007 -10.554 1.989 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - U - * - ML 148 147 3 150 3 1 1 11 30 -16.136 -0.000 -14.790 -13.422 -12.041 -15.000 2.000 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - G - * - ML 151 150 3 153 3 1 1 10 29 -16.136 -0.000 -14.790 -10.661 -12.419 2.000 -11.408 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - U - * - ML 154 153 3 156 3 1 1 8 27 -16.136 -0.000 -14.790 -13.422 -12.041 -15.000 2.000 D 155 153 3 156 3 0 0 14 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - A - + - ML 157 156 3 159 3 1 1 6 12 -6.467 -0.016 -14.790 2.000 -12.074 -11.321 -11.407 D 158 156 3 159 3 0 0 5 11 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 7 12 -4.540 -0.073 -7.240 0.000 0.000 0.000 0.000 [ MATL 41 ] 51 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.974 -4.732 -4.946 -10.885 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 5 60 106 -16.136 -0.000 -14.790 IL 165 165 2 165 3 1 6 62 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 57 - A - + - ML 166 165 2 168 3 1 5 60 106 -16.136 -0.066 -4.492 1.763 -1.337 -4.544 -2.588 D 167 165 2 168 3 0 4 58 104 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 61 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - a - + - ML 169 168 3 171 2 1 4 59 105 -16.726 -0.000 0.799 -1.182 0.631 -1.884 D 170 168 3 171 2 0 3 58 104 -11.471 -0.001 IL 171 171 3 171 2 1 5 59 106 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 58 104 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 26 45 -7.827 -14.131 -13.539 -0.007 [ MATP 48 ] 59 76 g c = = MP 174 173 1 178 6 2 2 32 50 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 20 39 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 60 75 g c = = MP 180 179 6 184 6 2 2 30 48 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 18 37 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 61 74 g c = = MP 186 185 6 190 6 2 2 28 46 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 16 35 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 62 73 g c = = MP 192 191 6 196 6 2 2 26 44 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 63 72 g c = = MP 198 197 6 202 6 2 2 24 42 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 64 71 g c = = MP 204 203 6 208 6 2 2 22 40 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.018 -18.716 -14.513 -15.195 -15.213 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 65 70 g c = = MP 210 209 6 214 4 2 2 20 38 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 30 -15.440 -15.121 -4.364 -0.072 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - A - + - ML 216 215 6 218 3 1 1 13 32 -11.817 -0.001 -10.471 1.994 -7.946 -7.221 -7.359 D 217 215 6 218 3 0 0 8 26 -17.482 -12.995 -0.000 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - G - + - ML 219 218 3 221 3 1 1 12 30 -11.817 -0.001 -10.471 -6.453 -8.215 1.992 -7.213 D 220 218 3 221 3 0 0 7 25 -17.482 -12.995 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - C - + - ML 222 221 3 224 3 1 1 10 29 -11.817 -0.001 -10.471 -7.298 1.992 -7.766 -6.336 D 223 221 3 224 3 0 0 5 24 -17.482 -12.995 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 69 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.994 -7.946 -7.221 -7.359 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 53 99 -16.136 -0.000 -14.790 IL 230 230 2 230 3 1 1 55 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 77 - A - + - ML 231 230 2 233 3 1 4 53 99 -0.939 -1.064 -14.790 1.652 -6.243 -0.356 -3.984 D 232 230 2 233 3 0 0 50 97 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 3 53 99 -4.465 -0.067 -12.660 0.000 0.000 0.000 0.000 [ MATL 62 ] 80 - u - + - ML 234 233 3 236 5 1 4 51 98 -15.070 -0.000 -14.885 -15.097 -15.989 -1.039 0.417 -2.253 0.977 D 235 233 3 236 5 0 0 50 96 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 52 98 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 81 114 G C = = MP 237 236 3 241 6 2 4 50 97 -16.004 -5.180 -0.041 -14.720 -14.999 -15.394 -13.514 -10.578 -14.720 -1.337 -15.352 -11.901 -9.858 -14.561 -11.913 3.869 -12.161 -0.667 -1.489 -12.304 -12.213 -13.451 ML 238 236 3 241 6 1 1 48 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 48 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 44 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 50 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 49 95 -1.421 -1.360 -2.582 -3.855 -10.216 0.000 0.000 0.000 0.000 [ MATP 64 ] 82 111 G C = = MP 243 242 6 247 6 2 4 48 95 -15.988 -15.928 -0.001 -14.704 -10.517 -15.379 -4.081 -2.706 -9.775 2.482 -10.906 -4.676 -0.174 -10.466 -10.214 3.154 -10.460 -4.761 -2.819 -2.708 -5.825 -5.406 ML 244 242 6 247 6 1 1 41 87 -9.959 -10.306 -5.020 -0.056 -10.155 -7.685 1.957 -4.982 -4.431 -4.694 MR 245 242 6 247 6 1 1 47 93 -9.379 -8.108 -4.017 -8.086 -0.125 -6.300 -2.880 1.828 -3.693 -2.080 D 246 242 6 247 6 0 0 42 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 48 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 48 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 83 110 A U = = MP 249 248 6 253 6 2 2 46 93 -6.270 -6.313 -0.106 -7.022 -14.983 -4.725 -1.555 -0.480 -9.918 3.231 -5.712 -10.542 -0.247 -10.589 -10.329 2.119 -10.590 -1.857 -4.066 -9.794 -8.141 -8.874 ML 250 248 6 253 6 1 1 38 84 -9.959 -10.306 -5.020 -0.056 -10.155 -7.685 -4.018 -5.518 1.956 -4.752 MR 251 248 6 253 6 1 1 46 92 -9.604 -8.333 -0.168 -8.311 -3.445 -6.525 -0.592 1.405 -2.356 -1.018 D 252 248 6 253 6 0 0 40 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 38 84 -6.576 -6.838 -4.756 -0.089 -9.270 -8.930 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 42 88 -5.703 -2.089 -0.440 -7.382 -8.488 0.000 0.000 0.000 0.000 [ MATP 66 ] 85 108 G C = = MP 255 254 6 259 6 2 2 45 91 -15.891 -15.830 -0.169 -7.250 -3.581 -5.632 -4.908 -2.076 -9.679 0.796 -4.974 -10.274 -2.453 -10.369 -10.117 3.671 -10.363 -5.530 -2.625 -5.683 -0.262 -8.644 ML 256 254 6 259 6 1 1 34 80 -12.191 -12.537 -7.252 -0.027 -12.387 -6.459 1.389 -1.217 -4.134 -0.163 MR 257 254 6 259 6 1 1 44 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 30 76 -15.303 -14.002 -9.799 -10.481 -10.498 -0.004 IL 259 259 5 259 6 1 1 44 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 44 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 86 107 g c = = MP 261 260 6 265 4 2 2 42 89 -5.979 -4.071 -0.171 -4.780 -1.645 1.688 -9.526 1.970 -4.198 -1.700 -5.724 -10.215 -4.807 2.975 -10.208 -3.132 -4.033 -3.770 -7.732 -8.491 ML 262 260 6 265 4 1 1 32 78 -9.477 -9.659 -0.107 -3.861 0.105 1.298 -1.358 -3.733 MR 263 260 6 265 4 1 1 44 90 -11.758 -2.503 -0.538 -2.895 -3.625 -0.421 1.623 -3.437 D 264 260 6 265 4 0 0 29 75 -11.314 -10.995 -1.444 -0.663 IL 265 265 5 265 4 1 1 37 83 -5.908 -6.592 -0.757 -1.392 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 48 94 -0.577 -2.628 -2.577 0.000 0.000 0.000 0.000 [ MATL 68 ] 88 - U - + - ML 267 266 6 269 3 1 1 28 55 -4.292 -0.085 -7.421 -0.332 -0.215 -2.684 1.130 D 268 266 6 269 3 0 0 26 53 -4.483 -0.345 -2.573 IL 269 269 3 269 3 1 1 30 57 -1.052 -0.952 -10.194 0.000 0.000 0.000 0.000 [ MATL 69 ] 92 - U - + - ML 270 269 3 272 3 1 1 25 52 -16.101 -0.017 -6.444 -1.094 -0.970 -2.431 1.504 D 271 269 3 272 3 0 0 24 51 -12.223 -0.333 -2.279 IL 272 272 3 272 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 93 - A - + - ML 273 272 3 275 3 1 1 24 51 -16.113 -0.008 -7.458 1.434 -0.049 -4.786 -1.756 D 274 272 3 275 3 0 0 23 50 -11.626 -0.023 -6.018 IL 275 275 3 275 3 1 1 26 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 94 - A - + - ML 276 275 3 278 3 1 1 23 50 -3.591 -0.205 -4.339 1.289 -0.866 -1.249 -0.769 D 277 275 3 278 3 0 0 20 47 -10.159 -2.323 -0.323 IL 278 278 3 278 3 1 1 24 51 -2.362 -0.555 -3.004 0.000 0.000 0.000 0.000 [ MATL 72 ] 97 - A - + - ML 279 278 3 281 3 1 1 22 49 -16.037 -0.038 -5.252 1.588 -0.954 -5.049 -1.162 D 280 278 3 281 3 0 0 19 46 -13.651 -2.844 -0.217 IL 281 281 3 281 3 1 1 24 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 98 - A - + - ML 282 281 3 284 3 1 1 21 48 -4.560 -0.465 -2.102 1.104 0.188 -1.728 -1.290 D 283 281 3 284 3 0 0 11 38 -13.948 -5.658 -0.029 IL 284 284 3 284 3 1 1 25 52 -0.985 -1.064 -5.920 0.000 0.000 0.000 0.000 [ MATL 74 ] 102 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -1.968 0.553 -4.398 1.157 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Thr-2nd-align LENG 90 MAXL 160 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:14:00 2015 COM [1] cmbuild --hand --enone Thr-final-vert.cm ../Thr-2nd-align.sto NSEQ 1092 EFFN 21.898819 CKSUM 1485268043 STATS LOCAL MSV -8.8175 0.71859 STATS LOCAL VITERBI -9.5069 0.71859 STATS LOCAL FORWARD -3.6459 0.71859 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24786 1.46057 1.49768 1.35818 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 0.00000 * 1 1.84375 3.37960 0.26855 3.14133 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 2 2.90619 0.71642 2.75570 0.93329 2 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 3 1.61494 0.91610 2.02636 1.31228 3 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 4 2.04029 0.94697 2.09806 1.02332 4 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02289 4.05049 5.25604 0.51915 0.90393 1.09861 0.40547 5 1.83627 1.70870 2.18439 0.60341 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 6 0.86152 1.94554 1.85715 1.27850 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02340 4.02209 5.25604 0.50623 0.92322 1.09861 0.40547 7 1.73685 3.00249 0.31431 3.12421 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01094 5.25663 5.17360 1.46634 0.26236 1.09861 0.40547 8 3.40644 4.08303 4.70927 0.06084 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01049 5.25618 5.25618 1.46634 0.26236 1.04403 0.43392 9 0.05731 5.09744 3.15392 4.97573 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 10 3.35530 5.45359 0.04463 5.41128 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 11 4.82260 0.57462 4.67263 0.86824 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 12 1.37011 2.96235 4.51232 0.38090 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 13 2.29099 1.43391 2.34899 0.57094 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01493 5.25663 4.64551 1.46634 0.26236 1.09861 0.40547 14 0.01587 5.65993 5.36846 4.87941 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01053 5.25223 5.25223 1.46634 0.26236 1.34612 0.30144 15 0.77615 2.49590 1.31097 1.67215 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.11571 5.25223 2.26303 1.46634 0.26236 1.34612 0.30144 16 1.48467 0.90042 3.27798 1.11072 18 c + - _ 1.38629 1.38629 1.38629 1.38629 0.66880 5.14820 0.73009 1.46634 0.26236 3.12290 0.04503 17 1.19001 1.41685 2.61479 0.96727 19 u + - _ 1.38629 1.38629 1.38629 1.38629 1.28303 1.90899 0.55413 0.14343 2.01274 0.14978 1.97253 18 1.07685 1.72188 1.33002 1.53188 22 a + - _ 1.38629 1.38629 1.38629 1.38629 0.10242 4.85562 2.41282 1.46634 0.26236 1.89453 0.16298 19 1.24014 1.40107 2.37326 0.99117 23 u + - _ 1.38629 1.38629 1.38629 1.38629 0.34317 4.84369 1.26370 1.46634 0.26236 1.74980 0.19093 20 1.59134 0.97531 2.86862 1.01474 24 c + - _ 1.38629 1.38629 1.38629 1.38629 0.40634 1.12642 4.63341 0.87011 0.54284 0.02199 3.82830 21 0.07067 3.84392 4.05144 3.52587 32 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 22 0.76271 2.29865 1.45577 1.60953 33 a = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 23 0.40542 4.66416 2.69933 1.36013 34 A = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 24 0.87782 4.80700 0.56964 4.56502 35 G = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 25 5.40356 0.07748 5.29102 2.73305 36 C = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 26 0.82466 1.84419 1.36175 1.91561 37 a + - , 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 27 3.11044 0.84790 2.87071 0.75408 38 u = - < 1.38629 1.38629 1.38629 1.38629 0.02380 4.00045 5.25663 0.49633 0.93844 1.09861 0.40547 28 3.27064 0.78345 3.04808 0.78146 40 u = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 29 2.46940 4.09267 0.12879 3.93696 41 G = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 30 2.10340 3.20897 0.24791 2.86244 42 G = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 31 2.65795 1.70310 2.58386 0.39704 43 U = - < 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 32 4.74191 0.12477 5.24731 2.26996 44 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 33 4.17577 4.04875 4.89410 0.04113 45 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 34 5.47793 5.11180 6.07686 0.01258 46 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 35 5.08082 6.25343 0.01191 5.59826 47 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 36 5.47793 5.11180 6.07686 0.01258 48 U * - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 37 0.00985 5.99104 5.54969 5.68185 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02065 4.18469 5.25663 0.58407 0.81560 1.09861 0.40547 38 0.03631 4.34399 4.24117 4.79328 51 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 39 0.75525 2.64411 1.28367 1.70364 52 a = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 40 3.20428 0.27667 3.11023 1.85461 53 C = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 41 2.80173 0.18248 3.90819 2.45324 54 C = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 42 0.82215 3.21029 0.76018 2.94527 55 g = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 43 0.75681 3.02894 0.85778 2.84094 56 a = - > 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 44 0.20239 2.30799 3.64547 2.85333 57 A + - , 1.38629 1.38629 1.38629 1.38629 0.05109 5.25663 3.11018 1.46634 0.26236 1.09861 0.40547 45 0.90898 2.08796 1.04002 2.12294 58 a + - , 1.38629 1.38629 1.38629 1.38629 2.22072 5.21645 0.12099 1.46634 0.26236 2.35654 0.09954 46 1.80805 1.30439 1.07542 1.49819 59 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 47 1.80275 1.30601 1.07738 1.49713 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 48 1.80024 1.30678 1.07832 1.49663 61 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 49 1.79908 1.30714 1.07875 1.49639 62 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 50 1.79860 1.30729 1.07893 1.49630 63 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 51 1.79844 1.30733 1.07899 1.49626 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 52 1.79844 1.30733 1.07899 1.49627 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.92963 0.05490 53 0.34820 2.52203 2.31716 2.16117 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06844 3.40891 3.40891 1.46634 0.26236 5.10353 0.00609 54 1.93627 2.68221 0.38179 2.25655 67 G + - _ 1.38629 1.38629 1.38629 1.38629 0.06844 3.40891 3.40891 1.46634 0.26236 5.10353 0.00609 55 2.00370 0.49800 2.54270 1.72167 68 C + - _ 1.38629 1.38629 1.38629 1.38629 0.06844 3.40891 3.40891 1.46634 0.26236 5.10353 0.00609 56 0.34820 2.52203 2.31716 2.16117 69 A + - _ 1.38629 1.38629 1.38629 1.38629 0.41318 3.40891 1.18621 1.46634 0.26236 5.10353 0.00609 57 1.72974 1.22043 1.16229 1.53806 70 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 58 1.72970 1.22044 1.16231 1.53805 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 59 1.72976 1.22042 1.16229 1.53806 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 60 1.72998 1.22033 1.16221 1.53813 73 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 61 1.73049 1.22011 1.16202 1.53828 74 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 62 1.73154 1.21966 1.16164 1.53859 75 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.15233 0.00580 63 1.73350 1.21882 1.16092 1.53917 76 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.01164 4.45918 64 0.26852 4.11901 1.65471 3.57271 77 A + - , 1.38629 1.38629 1.38629 1.38629 0.64054 0.75976 5.25663 0.06629 2.74665 1.09861 0.40547 65 1.87420 1.15178 2.57817 0.78847 80 u + - , 1.38629 1.38629 1.38629 1.38629 0.01048 5.25663 5.25663 1.46634 0.26236 1.09861 0.40547 66 3.23959 4.87982 0.07487 3.67458 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.01326 5.25663 4.83304 1.46634 0.26236 1.09861 0.40547 67 1.16823 2.59832 0.58302 2.87398 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.01109 5.25387 5.14930 1.46634 0.26236 1.26057 0.33337 68 0.69143 2.61701 0.96925 3.06285 83 A = - < 1.38629 1.38629 1.38629 1.38629 0.05689 4.09417 3.25359 0.54092 0.87279 0.79807 0.59820 69 1.83149 3.02966 0.35087 2.43705 85 G = - < 1.38629 1.38629 1.38629 1.38629 0.10484 5.22277 2.36302 1.46634 0.26236 2.23932 0.11264 70 1.00743 2.77020 0.66835 2.81941 86 G = - < 1.38629 1.38629 1.38629 1.38629 0.07860 4.28617 2.78331 0.71247 0.67419 0.58358 0.81621 71 1.52477 1.53591 2.60214 0.70734 88 u + - _ 1.38629 1.38629 1.38629 1.38629 0.06839 2.89532 4.52633 0.73966 0.64871 0.27679 1.41969 72 1.98582 1.98633 2.73404 0.41464 92 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02100 5.23470 4.16976 1.46634 0.26236 0.50227 0.92927 73 0.42850 1.51837 3.44969 2.32598 93 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01570 5.24231 4.57662 1.46634 0.26236 0.42950 1.05221 74 0.60235 1.91254 2.09962 1.70228 94 A + - _ 1.38629 1.38629 1.38629 1.38629 0.12369 2.69796 3.01579 0.35656 1.20423 1.20545 0.35604 75 0.33280 2.04893 3.48439 2.09118 97 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04674 5.20793 3.21400 1.46634 0.26236 1.55351 0.23763 76 0.71496 1.35632 2.29767 1.87936 98 a + - _ 1.38629 1.38629 1.38629 1.38629 0.28062 3.17894 1.59428 0.81547 0.58417 1.37626 0.29105 77 2.32952 1.05400 3.28397 0.66041 102 U + - _ 1.38629 1.38629 1.38629 1.38629 0.15172 2.53940 2.78298 1.02138 0.44644 0.25804 1.48088 78 2.72685 0.51638 2.50814 1.36072 107 C = - > 1.38629 1.38629 1.38629 1.38629 0.01151 5.16312 5.16312 1.46634 0.26236 1.06281 0.42386 79 3.13926 0.35886 2.44080 1.76537 108 C = - > 1.38629 1.38629 1.38629 1.38629 0.01329 4.87089 5.19662 1.10868 0.40047 0.26545 1.45612 80 2.97501 0.97601 2.51974 0.70996 110 u = - > 1.38629 1.38629 1.38629 1.38629 0.01055 5.24981 5.24981 1.46634 0.26236 0.62487 0.76643 81 3.19686 0.59641 2.50912 1.11784 111 C = - > 1.38629 1.38629 1.38629 1.38629 0.02860 3.77303 5.25663 0.79645 0.59952 1.09861 0.40547 82 3.72727 0.11628 4.71200 2.56744 114 C = - > 1.38629 1.38629 1.38629 1.38629 0.01655 5.25604 4.49169 1.46634 0.26236 1.09861 0.40547 83 3.33056 0.33753 2.86872 1.64028 115 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01055 5.25004 5.25004 1.46634 0.26236 1.42253 0.27589 84 1.77109 1.84941 1.93578 0.63826 116 U = - ) 1.38629 1.38629 1.38629 1.38629 0.01055 5.25004 5.25004 1.46634 0.26236 1.42253 0.27589 85 0.66220 2.23717 1.61923 1.71772 117 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01055 5.25004 5.25004 1.46634 0.26236 0.65818 0.72938 86 1.17476 1.94915 0.93233 1.86382 118 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01890 4.30475 5.25604 0.64901 0.73933 1.09861 0.40547 87 1.42620 1.82695 1.03391 1.41362 120 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 88 1.03839 2.80074 0.66009 2.68233 121 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 89 2.77288 0.37421 3.18940 1.56787 122 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01049 5.25604 5.25604 1.46634 0.26236 1.09861 0.40547 90 1.11883 1.81939 2.37191 0.87249 123 u + - : 1.38629 1.38629 1.38629 1.38629 0.00526 5.25081 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNA2-bactns.cm0000644000543100007160000016402311021467310017303 0ustar pchanlowelab### cove V2 94 nodes ### node 0 type 6 1 -1 0.01186 0.00000 0.93676 0.00000 0.04743 0.00395 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06667 0.00000 0.80000 0.00000 0.06667 0.06667 0.33333 0.00000 0.33333 0.00000 0.00000 0.33333 0.13333 0.06667 0.66667 0.13333 # INSL 0.25000 0.25000 0.25000 0.25000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 1 type 2 2 -1 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00400 0.00000 0.99200 0.00000 0.00400 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03984 0.11155 0.78884 0.05976 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 2 type 2 3 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02372 0.34783 0.58498 0.04348 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 3 type 2 4 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16206 0.30435 0.43874 0.09486 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 4 type 2 5 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06719 0.29644 0.50988 0.12648 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 5 type 2 6 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21344 0.35573 0.35968 0.07115 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 6 type 2 7 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.98810 0.00000 0.00794 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.20000 0.40000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.22530 0.23320 0.24506 0.29644 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 7 type 2 8 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00794 0.00000 0.98810 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.24901 0.02767 0.46245 0.26087 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 8 type 2 9 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00797 0.00000 0.98805 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00397 0.00397 0.00794 0.98413 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 9 type 2 10 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00398 0.00000 0.99203 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.68254 0.03175 0.26587 0.01984 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 10 type 2 11 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00791 0.06324 0.91304 0.01581 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 11 type 2 12 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05929 0.73913 0.01186 0.18972 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 12 type 2 13 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.02372 0.13834 0.26087 0.57708 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 13 type 2 14 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16206 0.62846 0.13834 0.07115 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 14 type 2 15 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.97628 0.00791 0.00791 0.00791 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 15 type 2 16 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01190 0.00000 0.98413 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.20553 0.01186 0.77470 0.00791 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 16 type 2 17 -1 0.60000 0.00000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.28000 0.00000 0.71600 0.00000 0.00400 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03984 0.33068 0.03187 0.59761 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 17 type 2 18 -1 0.01351 0.00000 0.97297 0.00000 0.01351 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00552 0.00000 0.83978 0.00000 0.15470 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03226 0.00000 0.90323 0.00000 0.06452 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03125 0.25000 0.03125 0.68750 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06593 0.17582 0.00549 0.75275 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 18 type 2 19 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.98419 0.00791 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 19 type 2 20 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.98814 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 20 type 2 21 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.52381 0.00000 0.47222 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00685 0.00000 0.81507 0.00000 0.17808 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.21769 0.08844 0.12245 0.57143 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.06324 0.17787 0.09881 0.66008 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 21 type 2 22 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.87747 0.00395 0.10672 0.01186 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 22 type 2 23 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.29644 0.00395 0.66798 0.03162 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 23 type 2 24 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.58103 0.25692 0.13834 0.02372 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 24 type 2 25 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.18182 0.00791 0.75099 0.05929 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 25 type 2 26 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00794 0.00000 0.98810 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01581 0.87352 0.06324 0.04743 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 26 type 2 27 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00398 0.00000 0.99203 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.55159 0.03175 0.38095 0.03571 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 27 type 2 28 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16206 0.51779 0.11858 0.20158 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 28 type 2 29 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15810 0.52964 0.08300 0.22925 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 29 type 2 30 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16996 0.20949 0.30830 0.31225 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 30 type 2 31 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01581 0.22925 0.74704 0.00791 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 31 type 2 32 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.32806 0.38735 0.19763 0.08696 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 32 type 2 33 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01976 0.64822 0.00395 0.32806 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 33 type 2 34 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.00395 0.98814 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 34 type 2 35 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03162 0.24506 0.34387 0.37945 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 35 type 2 36 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.30830 0.19763 0.24901 0.24506 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 36 type 2 37 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21344 0.25296 0.20949 0.32411 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 37 type 2 38 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.80632 0.00395 0.18577 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 38 type 2 39 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.68775 0.20158 0.00791 0.10277 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 39 type 2 40 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08300 0.19763 0.39130 0.32806 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 40 type 2 41 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.72332 0.22925 0.04348 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 41 type 2 42 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.31621 0.30435 0.20949 0.16996 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 42 type 2 43 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.21344 0.06324 0.53755 0.18577 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 43 type 2 44 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.19368 0.07510 0.52174 0.20949 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 44 type 2 45 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.00000 0.82937 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.33992 0.19763 0.25296 0.20949 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 45 type 2 46 -1 0.02273 0.00000 0.95455 0.00000 0.02273 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.93839 0.00000 0.04739 0.00000 0.01422 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.00000 0.60000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16667 0.16667 0.50000 0.16667 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16038 0.02358 0.68396 0.13208 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 46 type 2 47 -1 0.99000 0.00000 0.00500 0.00000 0.00500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03636 0.00000 0.94545 0.00000 0.01818 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23214 0.07143 0.62500 0.07143 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 47 type 2 48 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03704 0.00000 0.94444 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.07273 0.29091 0.30909 0.32727 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 48 type 2 49 -1 0.99010 0.00000 0.00495 0.00000 0.00495 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.30189 0.00000 0.67925 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09259 0.53704 0.18519 0.18519 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 49 type 2 50 -1 0.99078 0.00000 0.00461 0.00000 0.00461 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.39474 0.00000 0.57895 0.00000 0.02632 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15385 0.43590 0.25641 0.15385 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 50 type 2 51 -1 0.99134 0.00000 0.00433 0.00000 0.00433 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.37500 0.00000 0.58333 0.00000 0.04167 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.16000 0.12000 0.60000 0.12000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 51 type 2 52 -1 0.99163 0.00000 0.00418 0.00000 0.00418 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.56250 0.00000 0.37500 0.00000 0.06250 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17647 0.11765 0.47059 0.23529 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 52 type 2 53 -1 0.80567 0.00000 0.19028 0.00000 0.00405 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11111 0.22222 0.11111 0.55556 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 53 type 2 54 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01852 0.00000 0.96296 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.07273 0.45455 0.38182 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 54 type 2 55 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01852 0.00000 0.96296 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23636 0.21818 0.03636 0.50909 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 55 type 2 56 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.18519 0.00000 0.77778 0.00000 0.03704 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40000 0.20000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.61818 0.16364 0.05455 0.16364 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 56 type 2 57 -1 0.99048 0.00000 0.00476 0.00000 0.00476 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.66667 0.00000 0.04444 0.00000 0.28889 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60000 0.00000 0.33333 0.00000 0.06667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.18750 0.06250 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.52174 0.17391 0.17391 0.13043 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 57 type 2 58 -1 0.95951 0.00000 0.03644 0.00000 0.00405 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12500 0.00000 0.75000 0.00000 0.12500 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.33333 0.11111 0.33333 0.22222 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 58 type 2 59 -1 0.95816 0.00000 0.03766 0.00000 0.00418 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.06250 0.00000 0.87500 0.00000 0.06250 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11765 0.41176 0.29412 0.17647 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 59 type 2 60 -1 0.93074 0.00000 0.06494 0.00000 0.00433 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.04167 0.00000 0.91667 0.00000 0.04167 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08000 0.52000 0.12000 0.28000 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 60 type 2 61 -1 0.92166 0.00000 0.07373 0.00000 0.00461 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02632 0.00000 0.94737 0.00000 0.02632 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.17949 0.25641 0.43590 0.12821 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 61 type 2 62 -1 0.98515 0.00000 0.00990 0.00000 0.00495 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01887 0.00000 0.96226 0.00000 0.01887 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11111 0.14815 0.61111 0.12963 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 62 type 2 63 -1 0.99005 0.00000 0.00498 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01852 0.00000 0.96296 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.32727 0.29091 0.30909 0.07273 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 63 type 2 64 -1 0.00498 0.00000 0.99005 0.00000 0.00498 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.31481 0.00000 0.66667 0.00000 0.01852 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.05455 0.43636 0.20000 0.30909 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 64 type 2 65 -1 0.05263 0.00000 0.89474 0.00000 0.05263 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00424 0.00000 0.22458 0.00000 0.77119 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00543 0.00000 0.98913 0.00000 0.00543 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02162 0.03784 0.03243 0.90811 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08861 0.02532 0.78481 0.10127 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 65 type 2 66 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00791 0.77075 0.01186 0.20949 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 66 type 2 67 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.22134 0.07905 0.67984 0.01976 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 67 type 2 68 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.15415 0.37154 0.29644 0.17787 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 68 type 2 69 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.23715 0.23715 0.40711 0.11858 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 69 type 2 70 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.12648 0.00791 0.86166 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 70 type 2 71 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00791 0.00395 0.98419 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 71 type 2 72 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00794 0.00000 0.98810 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.00395 0.00395 0.98814 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 72 type 2 73 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00398 0.00000 0.99203 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00397 0.00397 0.00397 0.98810 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 73 type 2 74 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.98814 0.00395 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 74 type 2 75 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.31225 0.00395 0.67984 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 75 type 2 76 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00794 0.00000 0.98810 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.98814 0.00395 0.00395 0.00395 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 76 type 2 77 -1 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01594 0.00000 0.98008 0.00000 0.00398 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.38095 0.03968 0.38095 0.19841 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 77 type 2 78 -1 0.16667 0.00000 0.66667 0.00000 0.16667 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00402 0.00000 0.99197 0.00000 0.00402 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00800 0.16000 0.00400 0.82800 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 78 type 2 79 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.97233 0.00791 0.01581 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 79 type 2 80 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00395 0.86561 0.00791 0.12253 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 80 type 2 81 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11067 0.36759 0.24111 0.28063 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 81 type 2 82 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.11858 0.20553 0.42292 0.25296 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 82 type 2 83 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.01186 0.39526 0.07905 0.51383 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 83 type 2 84 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.26087 0.43083 0.02767 0.28063 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 84 type 2 85 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.24901 0.24901 0.27273 0.22925 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 85 type 2 86 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.04743 0.34783 0.37549 0.22925 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 86 type 2 87 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.10672 0.49407 0.31621 0.08300 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 87 type 2 88 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.09091 0.36759 0.30830 0.23320 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 88 type 2 89 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00397 0.00000 0.99206 0.00000 0.00397 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.03557 0.55336 0.35968 0.05138 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 89 type 2 90 -1 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01190 0.00000 0.98016 0.00000 0.00794 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.00000 0.50000 0.00000 0.25000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.20000 0.40000 0.20000 0.20000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.08696 0.73123 0.07115 0.11067 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 90 type 2 91 -1 0.60000 0.00000 0.20000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.17600 0.00000 0.82000 0.00000 0.00400 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.62550 0.03586 0.22311 0.11554 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 91 type 2 92 -1 0.95833 0.00000 0.02083 0.00000 0.02083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00483 0.00000 0.99034 0.00000 0.00483 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00481 0.98558 0.00481 0.00481 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 92 type 2 93 -1 0.95833 0.00000 0.02083 0.00000 0.02083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00483 0.00000 0.99034 0.00000 0.00483 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.33333 0.00000 0.33333 0.00000 0.33333 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00481 0.98558 0.00481 0.00481 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR ### node 93 type 2 -1 -1 0.97872 0.00000 0.00000 0.00000 0.02128 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99515 0.00000 0.00000 0.00000 0.00485 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.50000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25000 0.25000 0.25000 0.25000 # INSL 0.00000 0.00000 0.00000 0.00000 # INSR 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.00000 0.00000 0.00000 0.00000 # MATP 0.98558 0.00481 0.00481 0.00481 # MATL 0.00000 0.00000 0.00000 0.00000 # MATR tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Thr.cm0000644000543100007160000017237412573631164021436 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Thr STATES 289 NODES 76 CLEN 90 W 111 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:56:07 2015 COM [1] cmbuild --hand --enone Thr_model.cm aligntRNAdb-Thr.sto COM [2] cmcalibrate --seed 208 Thr_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 797174568 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.2659 0.71867 ECMLC 0.73086 -6.27139 2.36108 1600000 659481 0.001820 ECMGC 0.32052 -43.93631 -29.12490 1600000 46113 0.008674 ECMLI 0.74491 -5.52406 2.83444 1600000 607083 0.001977 ECMGI 0.33929 -38.25519 -24.39890 1600000 44037 0.009083 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 111 157 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 17 37 113 158 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 18 39 113 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 111 - U - + MR 3 2 3 5 5 22 46 112 157 -13.126 -0.001 -12.941 -13.153 -14.045 0.770 -2.450 -4.717 1.053 D 4 2 3 5 5 14 34 110 156 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 17 37 112 157 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 110 G C = = MP 6 5 3 10 6 23 45 111 156 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.800 -4.086 -13.423 -1.640 -13.539 -9.877 -7.935 -13.143 -9.996 3.924 -10.214 -1.217 -8.270 -10.316 -10.341 -12.248 ML 7 5 3 10 6 15 36 109 154 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 15 35 108 154 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 32 105 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 16 37 110 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 16 37 110 155 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 109 U A = = MP 12 11 6 16 6 22 43 109 154 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 0.288 -10.571 0.895 -9.692 -10.530 -7.599 -10.650 -9.795 3.672 -3.215 -4.297 -9.332 ML 13 11 6 16 6 15 35 107 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 15 35 106 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 31 103 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 16 36 108 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 16 37 108 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 108 C G = = MP 18 17 6 22 6 22 42 107 152 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.628 -4.183 -3.366 3.941 -9.692 -10.530 -7.600 -10.650 -9.796 -1.103 -10.943 -6.480 -9.332 ML 19 17 6 22 6 15 35 105 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 15 35 104 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 12 31 101 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 16 36 106 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 16 36 106 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 107 U A = = MP 24 23 6 28 6 20 40 105 150 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.391 -10.427 -7.627 -1.940 -10.571 2.572 -9.692 -10.530 -7.599 -10.650 -9.795 3.279 -10.943 -3.864 -9.332 ML 25 23 6 28 6 15 35 103 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 34 102 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 12 31 99 145 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 16 36 104 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 16 36 104 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 106 U A = = MP 30 29 6 34 6 18 38 103 148 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 0.422 -1.999 -4.588 -1.663 0.736 -3.296 -0.557 -3.413 -9.113 -4.864 -9.531 -6.843 3.492 -9.441 -2.763 -3.917 ML 31 29 6 34 6 14 34 101 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 14 34 101 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 31 98 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 15 35 102 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 35 102 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 105 u u = = MP 36 35 6 40 6 16 36 101 146 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -6.290 -3.591 -6.456 1.292 -3.462 -2.290 -1.349 0.758 -6.503 -0.180 -7.061 -3.465 1.411 0.665 -4.280 2.530 ML 37 35 6 40 6 14 33 99 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 13 33 99 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 30 97 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 15 34 100 146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 15 34 100 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 104 G C = = MP 42 41 6 46 4 14 34 99 144 -13.280 -13.487 -0.001 -11.901 -11.537 -8.652 -12.667 0.458 -13.395 -9.999 -7.928 -12.528 -3.249 3.844 -10.238 -2.734 -8.221 -10.392 -10.271 -11.384 ML 43 41 6 46 4 13 32 98 144 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 12 31 97 143 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 30 96 142 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 14 33 99 145 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 33 98 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - + - ML 48 47 6 50 3 12 32 97 142 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 49 47 6 50 3 11 30 95 141 -6.174 -1.687 -0.566 IL 50 50 3 50 3 13 32 97 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - + - ML 51 50 3 53 2 11 31 96 141 -14.843 -0.000 1.999 -10.184 -9.419 -9.524 D 52 50 3 53 2 10 30 95 140 -8.445 -0.004 IL 53 53 3 53 2 12 31 96 142 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 30 95 140 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 12 42 61 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 12 42 61 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 24 42 -0.001 -12.197 -11.604 -12.244 [ MATP 15 ] 10 26 G C = = MP 58 57 1 62 6 2 3 24 42 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.341 -8.660 -12.228 0.630 -13.282 -10.115 -7.924 -12.146 -9.971 3.761 -10.260 -0.182 -8.180 -10.462 -10.214 -10.906 ML 59 57 1 62 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 25 U A = = MP 64 63 6 68 6 2 3 22 40 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.406 -12.071 -12.282 -11.578 -10.477 -12.143 -10.725 -11.966 -10.386 -11.582 -12.479 -11.958 3.996 -10.482 -5.721 -5.508 ML 65 63 6 68 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 24 A U = = MP 70 69 6 74 6 2 3 20 38 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.182 -8.901 -10.308 3.858 -11.234 -12.746 -6.842 -10.248 -9.916 -5.551 -10.537 -6.203 0.535 -11.509 -8.762 -8.935 ML 71 69 6 74 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 23 u u = = MP 76 75 6 80 4 2 3 18 36 -13.280 -13.487 -0.001 -11.901 -2.249 -11.391 -10.427 -7.627 -0.285 -10.571 -1.160 -9.692 -10.530 -7.599 -10.650 -9.795 2.838 -3.688 -3.082 2.839 ML 77 75 6 80 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - + - ML 82 81 6 84 3 1 2 15 34 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 83 81 6 84 3 0 0 18 36 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - + - ML 85 84 3 87 3 1 1 14 33 -14.190 -0.370 -2.145 1.347 -1.358 -2.059 -0.276 D 86 84 3 87 3 0 0 17 35 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - u - + - ML 88 87 3 90 3 1 1 13 32 -13.821 -1.546 -0.605 -1.346 0.715 -7.061 0.969 D 89 87 3 90 3 0 0 12 30 -13.472 -8.985 -0.003 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - c - + - ML 91 90 3 93 3 1 1 13 31 -12.276 -4.124 -0.086 -0.562 0.819 -5.286 0.616 D 92 90 3 93 3 0 0 12 30 -15.167 -0.494 -1.785 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - a - + - ML 94 93 3 96 3 1 1 12 30 -13.294 -0.001 -11.948 0.929 -1.048 -0.902 0.107 D 95 93 3 96 3 0 0 10 28 -14.501 -1.792 -0.492 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - A - + - ML 97 96 3 99 3 1 1 10 29 -13.614 -1.998 -0.416 1.089 -0.060 -2.183 -0.530 D 98 96 3 99 3 0 0 9 27 -14.012 -9.525 -0.002 IL 99 99 3 99 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - u - + - ML 100 99 3 102 3 1 1 6 11 -3.041 -0.188 -10.273 -1.045 0.671 -4.663 0.914 D 101 99 3 102 3 0 0 5 10 -3.427 -0.143 -9.737 IL 102 102 3 102 3 1 1 6 10 -5.612 -0.034 -8.312 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.989 -10.073 -5.104 -9.473 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - c - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.701 0.727 -2.590 -0.855 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 44 C G = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -8.579 -8.292 -8.557 -0.341 0.747 -9.365 3.066 -2.132 -8.424 -1.090 -8.922 -5.869 2.047 -8.752 -1.804 -7.146 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 43 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.098 -11.373 -10.421 -2.621 -4.758 -10.568 2.139 -9.688 -10.523 -7.572 -10.645 -9.760 3.474 -10.936 -6.476 -1.939 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 42 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.767 -0.745 -13.313 -0.002 -13.522 -9.891 -7.935 -13.056 -9.994 3.846 -10.217 -6.527 -8.264 -10.325 -10.333 -12.117 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 41 G C = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.847 -8.641 -13.594 -1.661 -13.563 -9.858 -7.936 -13.272 -9.998 3.962 -10.210 -3.618 -8.278 -10.304 -10.353 -12.453 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 40 U A = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.109 -11.391 -10.427 -7.628 1.002 -2.359 -0.024 -9.692 -10.530 -7.599 -10.650 -9.795 3.439 -10.943 0.969 -9.332 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - C - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.389 1.874 -9.845 -1.594 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.727 -10.497 1.998 -9.485 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - U - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.999 -10.184 -9.419 -9.524 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 63 109 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 5 65 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - + - ML 166 165 2 168 3 1 4 63 109 -14.190 -0.085 -4.137 1.783 -1.255 -4.081 -3.640 D 167 165 2 168 3 0 3 61 107 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 5 64 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - + - ML 169 168 3 171 2 1 4 62 108 -14.759 -0.000 1.747 -4.215 -0.949 -3.816 D 170 168 3 171 2 0 3 61 107 -10.197 -0.001 IL 171 171 3 171 2 1 4 62 108 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 3 61 107 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 46 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 47 64 g c = = MP 174 173 1 178 6 2 2 32 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 40 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 48 63 g c = = MP 180 179 6 184 6 2 2 30 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 38 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 49 62 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 36 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 50 61 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 51 60 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 33 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 52 59 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 53 58 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -4.280 -0.077 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - A - + - ML 216 215 6 218 3 1 1 15 33 -10.067 -0.005 -8.721 1.978 -5.942 -5.350 -5.580 D 217 215 6 218 3 0 0 9 28 -15.526 -11.039 -0.001 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - A - + - ML 219 218 3 221 3 1 1 13 32 -10.067 -0.005 -8.721 1.978 -5.942 -5.350 -5.580 D 220 218 3 221 3 0 0 8 27 -15.526 -11.039 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - A - + - ML 222 221 3 224 3 1 1 12 30 -10.067 -0.005 -8.721 1.978 -5.942 -5.350 -5.580 D 223 221 3 224 3 0 0 7 25 -15.526 -11.039 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 -4.785 -6.403 1.975 -5.522 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 3 53 99 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 55 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - + - ML 231 230 2 233 3 1 3 53 99 -3.650 -0.120 -12.844 1.903 -8.517 -2.150 -4.959 D 232 230 2 233 3 0 0 51 97 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 53 99 -5.332 -0.042 -8.033 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - u - + - ML 234 233 3 236 5 1 3 52 98 -13.126 -0.001 -12.941 -13.153 -14.045 0.497 -0.751 -1.786 0.769 D 235 233 3 236 5 0 0 50 96 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 52 98 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 68 103 G C = = MP 237 236 3 241 6 2 4 51 97 -14.078 -5.178 -0.041 -12.794 -13.073 -13.468 -12.010 -0.323 -14.330 -6.112 -13.641 -9.799 -7.938 -13.787 -10.005 3.923 -10.197 -6.568 -8.302 -10.266 -10.388 -13.418 ML 238 236 3 241 6 1 1 48 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 49 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 45 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 50 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 48 94 -5.028 -1.911 -1.184 -1.950 -7.813 0.000 0.000 0.000 0.000 [ MATP 64 ] 69 101 G C = = MP 243 242 6 247 6 2 4 49 95 -14.045 -13.984 -0.006 -12.761 -8.094 -13.435 -11.774 -1.233 -13.408 2.226 -13.475 -2.969 -7.873 -13.151 -9.960 3.426 -10.173 -6.498 -8.212 -10.264 -10.277 -12.265 ML 244 242 6 247 6 1 1 45 91 -9.058 -9.404 -4.118 -0.107 -9.254 -6.783 1.895 -3.697 -3.210 -3.372 MR 245 242 6 247 6 1 1 47 93 -8.977 -7.706 -3.615 -7.684 -0.168 -5.898 -2.134 1.715 -2.965 -1.469 D 246 242 6 247 6 0 0 44 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 48 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 48 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 70 100 A U = = MP 249 248 6 253 6 2 2 47 93 -4.158 -13.979 -0.138 -8.026 -7.122 -5.361 -2.879 -2.900 -10.255 3.739 -12.396 -13.550 -7.854 -10.298 -9.815 1.081 -10.485 -2.037 -7.778 -11.560 -9.684 -8.853 ML 250 248 6 253 6 1 1 43 89 -9.058 -9.404 -4.118 -0.107 -9.254 -6.783 -2.893 -4.271 1.900 -3.630 MR 251 248 6 253 6 1 1 46 91 -9.373 -8.102 -1.728 -8.080 -0.564 -6.294 0.103 0.979 -1.711 -0.623 D 252 248 6 253 6 0 0 43 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 46 92 -1.461 -2.025 -1.545 -4.437 -10.063 -9.723 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 44 90 -4.742 -2.830 -0.313 -6.421 -7.527 0.000 0.000 0.000 0.000 [ MATP 66 ] 73 98 G C = = MP 255 254 6 259 6 2 2 45 91 -13.954 -13.893 -0.562 -5.391 -2.716 -2.773 -11.183 -1.281 -12.006 0.968 -12.872 -9.849 -2.141 -12.068 -3.840 3.735 -10.070 -6.280 -7.818 -10.165 -9.803 -10.785 ML 256 254 6 259 6 1 1 42 88 -10.512 -10.858 -5.573 -0.038 -10.708 -8.238 0.880 -2.435 -2.652 0.860 MR 257 254 6 259 6 1 1 44 90 -9.679 -8.408 -0.971 -1.886 -2.286 -6.600 0.168 1.029 -1.932 -0.802 D 258 254 6 259 6 0 0 42 88 -12.807 -11.506 -7.303 -7.985 -2.618 -0.275 IL 259 259 5 259 6 1 1 43 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 43 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 74 97 a c = = MP 261 260 6 265 4 2 2 40 86 -5.196 -5.658 -0.446 -2.192 -2.021 2.539 -3.778 2.336 -8.555 -4.225 -2.617 -8.068 -3.625 2.029 -8.070 -1.611 -3.887 -7.284 -5.632 -6.355 ML 262 260 6 265 4 1 1 41 87 -3.066 -4.784 -0.565 -2.572 0.134 0.553 0.259 -2.064 MR 263 260 6 265 4 1 1 47 93 -10.760 -1.218 -4.544 -0.925 -3.059 1.717 -1.659 -1.857 D 264 260 6 265 4 0 0 30 76 -10.840 -10.522 -1.299 -0.755 IL 265 265 5 265 4 1 1 40 86 -1.350 -6.366 -0.753 -8.852 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 48 94 -0.580 -2.421 -2.794 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - A - + - ML 267 266 6 269 3 1 1 29 55 -2.673 -0.246 -12.213 1.165 -1.420 -1.883 0.153 D 268 266 6 269 3 0 0 27 54 -14.119 -0.354 -2.201 IL 269 269 3 269 3 1 1 29 56 -1.444 -0.665 -8.990 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - u - + - ML 270 269 3 272 3 1 1 27 54 -14.075 -0.005 -8.211 0.587 -1.020 -1.390 0.699 D 271 269 3 272 3 0 0 26 53 -11.927 -0.068 -4.448 IL 272 272 3 272 3 1 1 28 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - C - + - ML 273 272 3 275 3 1 1 26 53 -14.182 -0.040 -5.190 0.191 1.110 -5.234 -0.572 D 274 272 3 275 3 0 0 25 52 -8.455 -0.221 -2.846 IL 275 275 3 275 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - ML 276 275 3 278 3 1 1 25 52 -3.548 -0.206 -4.396 1.122 -0.209 -1.608 -0.668 D 277 275 3 278 3 0 0 24 50 -10.479 -0.344 -2.242 IL 278 278 3 278 3 1 1 25 52 -2.821 -0.265 -5.245 0.000 0.000 0.000 0.000 [ MATL 72 ] 86 - A - + - ML 279 278 3 281 3 1 1 24 51 -14.111 -0.078 -4.258 1.361 -0.016 -4.994 -1.284 D 280 278 3 281 3 0 0 19 45 -11.422 -4.300 -0.076 IL 281 281 3 281 3 1 1 25 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 87 - a - + - ML 282 281 3 284 3 1 1 23 50 -2.905 -0.534 -2.509 0.731 0.233 -1.301 -0.398 D 283 281 3 284 3 0 0 13 39 -12.314 -7.827 -0.007 IL 284 284 3 284 3 1 1 25 52 -0.993 -1.011 -9.575 0.000 0.000 0.000 0.000 [ MATL 74 ] 92 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.402 0.920 -4.411 0.384 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Thr LENG 90 MAXL 169 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:56:08 2015 COM [1] cmbuild --hand --enone Thr_model.cm aligntRNAdb-Thr.sto NSEQ 282 EFFN 6.295258 CKSUM 797174568 STATS LOCAL MSV -8.5616 0.71867 STATS LOCAL VITERBI -9.7963 0.71867 STATS LOCAL FORWARD -3.4760 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23952 1.45499 1.49528 1.37482 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 0.00000 * 1 2.87022 4.04774 0.09840 3.93399 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 2 2.79451 1.32872 2.59436 0.51192 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 3 4.48611 0.06948 4.36350 3.14374 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 4 3.10733 0.94345 2.88360 0.67322 4 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 5 1.63977 1.49092 1.80036 0.87810 5 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 6 1.56404 1.52880 1.68782 0.94420 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 7 2.23417 3.56250 0.18401 3.42275 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 8 3.81125 3.59794 4.35732 0.06434 8 U + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 9 0.04245 4.47836 4.11050 4.28225 9 A + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 10 2.14256 3.54353 0.19820 3.39524 10 G = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 11 4.62615 3.29944 4.53579 0.05913 11 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 12 0.27485 3.06540 2.48856 2.20141 12 A = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 13 1.96198 1.56573 1.92564 0.68379 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 14 0.04245 4.47836 4.11050 4.28225 14 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 15 0.68426 1.96580 2.15426 1.42919 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.21577 4.50014 1.69840 1.46634 0.26236 1.09861 0.40547 16 1.78630 1.09156 2.61950 0.85829 16 u + - _ 1.38629 1.38629 1.38629 1.38629 0.68132 4.31156 0.73264 1.46634 0.26236 2.91633 0.05565 17 1.42908 1.23965 2.13478 1.04210 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.65633 3.68191 0.78510 1.46634 0.26236 0.37197 1.16916 18 0.97607 1.78338 1.78934 1.24455 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03487 4.06655 4.06655 1.46634 0.26236 1.22929 0.34602 19 0.87524 1.54499 2.07363 1.40979 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.77586 4.21209 0.64459 1.46634 0.26236 1.39895 0.28350 20 1.45392 1.33842 2.05442 0.97838 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.09267 2.77350 3.64734 0.69413 0.69217 0.03728 3.30794 21 0.05541 4.28272 3.73930 4.11467 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 22 1.09650 2.08166 1.45534 1.17792 23 a = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 23 2.29072 2.82182 2.88327 0.24417 24 U = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 24 0.06912 4.70332 3.11762 4.30808 25 A = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 25 3.59421 0.26319 3.34661 1.77950 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 26 1.03526 1.14932 2.25754 1.49876 27 a + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 27 2.11798 0.81522 2.00336 1.19633 28 c = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 28 2.71882 1.15075 2.55814 0.61581 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 29 2.22374 3.64963 0.17902 3.51629 30 G = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 30 3.06676 4.30503 0.07768 4.22222 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 31 2.52966 1.33624 2.39385 0.56880 32 U = - < 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 32 3.47855 0.16496 4.06903 2.26218 33 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 33 3.81125 3.59794 4.35732 0.06434 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 34 3.81125 3.59794 4.35732 0.06434 35 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 35 3.86480 4.86680 0.04209 4.37767 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 36 3.81125 3.59794 4.35732 0.06434 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 37 0.04245 4.47836 4.11050 4.28225 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 38 0.04245 4.47836 4.11050 4.28225 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 39 0.62685 2.48737 1.25406 2.33043 40 A = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 40 4.36047 0.09541 4.16785 2.76874 41 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 41 3.73725 0.18240 3.47693 2.18917 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 42 0.69222 2.73442 1.06890 2.39452 43 A = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 43 1.21717 2.16760 0.82306 1.89447 44 g = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 44 0.28500 2.22802 2.82448 2.51444 45 A + - , 1.38629 1.38629 1.38629 1.38629 0.06758 4.50014 2.91430 1.46634 0.26236 1.09861 0.40547 45 0.31335 2.87504 1.98023 2.59626 46 A + - , 1.38629 1.38629 1.38629 1.38629 1.46032 4.45605 0.27941 1.46634 0.26236 1.92911 0.15698 46 1.80805 1.30439 1.07542 1.49819 47 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 47 1.80302 1.30593 1.07728 1.49719 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 48 1.80067 1.30665 1.07816 1.49671 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 49 1.79962 1.30697 1.07855 1.49650 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 50 1.79922 1.30710 1.07870 1.49642 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 51 1.79912 1.30713 1.07874 1.49640 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 52 1.79917 1.30711 1.07872 1.49641 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.76369 0.06513 53 0.67147 2.00927 1.83245 1.63509 54 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08175 3.23786 3.23786 1.46634 0.26236 4.21288 0.01491 54 0.67147 2.00927 1.83245 1.63509 55 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08175 3.23786 3.23786 1.46634 0.26236 4.21288 0.01491 55 0.67147 2.00927 1.83245 1.63509 56 A + - _ 1.38629 1.38629 1.38629 1.38629 0.08175 3.23786 3.23786 1.46634 0.26236 4.21288 0.01491 56 1.40872 2.03186 0.84203 1.64187 57 g + - _ 1.38629 1.38629 1.38629 1.38629 0.24212 3.23786 1.73845 1.46634 0.26236 4.21288 0.01491 57 1.73043 1.22013 1.16204 1.53826 58 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 58 1.73034 1.22017 1.16208 1.53824 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 59 1.73033 1.22018 1.16208 1.53823 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 60 1.73046 1.22012 1.16203 1.53827 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 61 1.73087 1.21994 1.16188 1.53839 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 62 1.73177 1.21956 1.16155 1.53866 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.26310 0.01418 63 1.73350 1.21882 1.16092 1.53917 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.02856 3.56996 64 0.14828 3.54888 2.64058 3.27716 65 A + - , 1.38629 1.38629 1.38629 1.38629 0.08637 2.63610 4.50014 0.28562 1.39250 1.09861 0.40547 65 1.12766 1.73051 2.04551 0.99506 67 u + - , 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 66 2.73869 4.15115 0.10271 4.06217 68 G = - < 1.38629 1.38629 1.38629 1.38629 0.02899 4.50014 4.04746 1.46634 0.26236 1.09861 0.40547 67 1.42810 2.74423 0.47040 2.64248 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02538 4.49376 4.27739 1.46634 0.26236 1.27327 0.32838 68 0.41688 3.27151 1.36130 3.06558 70 A = - < 1.38629 1.38629 1.38629 1.38629 0.09311 2.92146 3.35084 0.67431 0.71234 1.12233 0.39381 69 1.76660 2.79340 0.35347 2.72375 73 G = - < 1.38629 1.38629 1.38629 1.38629 0.27669 4.46970 1.46854 1.46634 0.26236 1.09570 0.40692 70 1.11064 2.00028 0.97877 1.83521 74 g = - < 1.38629 1.38629 1.38629 1.38629 0.23950 3.22435 1.75331 0.85132 0.55661 1.02298 0.44554 71 0.84708 1.88075 2.01052 1.25548 77 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14593 2.11553 4.18583 0.58789 0.81080 0.30814 1.32731 72 1.09136 1.80106 1.94588 1.03211 81 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02634 4.44024 4.25446 1.46634 0.26236 0.30711 1.33018 73 1.30736 0.87518 2.59967 1.43388 82 c + - _ 1.38629 1.38629 1.38629 1.38629 0.04397 4.49589 3.44635 1.46634 0.26236 0.89505 0.52524 74 0.82394 1.59925 2.03110 1.47814 83 a + - _ 1.38629 1.38629 1.38629 1.38629 0.12918 2.60271 3.05515 0.37996 1.15166 0.66003 0.72740 75 0.64292 1.54822 2.50984 1.71292 86 A + - _ 1.38629 1.38629 1.38629 1.38629 0.06417 4.46048 2.98377 1.46634 0.26236 1.87192 0.16703 76 1.02712 1.41268 1.93740 1.36887 87 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29166 2.19911 1.95140 0.77929 0.61384 2.29044 0.10672 77 1.49448 1.02027 2.42259 1.11948 92 c + - _ 1.38629 1.38629 1.38629 1.38629 0.29261 2.41831 1.80416 1.15784 0.37712 0.38040 1.15072 78 2.00542 0.86404 1.83059 1.26011 97 c = - > 1.38629 1.38629 1.38629 1.38629 0.03109 4.31181 4.06277 1.46634 0.26236 0.30861 1.32601 79 2.94316 0.38744 2.62231 1.63028 98 C = - > 1.38629 1.38629 1.38629 1.38629 0.02330 4.46415 4.46415 1.46634 0.26236 0.66551 0.72157 80 3.13759 1.51792 3.06117 0.37018 100 U = - > 1.38629 1.38629 1.38629 1.38629 0.02272 4.48892 4.48892 1.46634 0.26236 0.69190 0.69439 81 2.90406 0.50420 2.60031 1.32065 101 C = - > 1.38629 1.38629 1.38629 1.38629 0.03295 3.84871 4.50014 0.84039 0.56483 1.09861 0.40547 82 4.21997 0.09379 3.99493 2.87490 103 C = - > 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 83 3.52976 0.21948 3.38574 2.01069 104 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 84 1.48810 1.67134 1.47956 1.02592 105 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 85 0.87261 1.92674 1.42998 1.62351 106 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 86 0.71328 3.05496 0.90106 2.86997 107 a = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 87 3.32850 4.38593 0.06367 4.31343 108 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 88 0.50020 2.71031 1.38296 2.57389 109 A = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 89 4.14258 0.12754 3.90972 2.47916 110 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02247 4.50014 4.50014 1.46634 0.26236 1.09861 0.40547 90 1.02443 2.11797 2.41877 0.84005 111 u + - : 1.38629 1.38629 1.38629 1.38629 0.01130 4.48897 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Cys.cm0000644000543100007160000017242212573631650021145 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Cys-2nd-align STATES 289 NODES 76 CLEN 90 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto COM [2] cmcalibrate --seed 208 Cys-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1085 EFFN 1085.000000 CKSUM 4203025139 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.5523 0.71872 ECMLC 0.63230 -7.45037 1.82190 1600000 422055 0.002843 ECMGC 0.33509 -38.57774 -23.65245 1600000 59441 0.006729 ECMLI 0.62678 -6.99791 2.27396 1600000 400898 0.002993 ECMGI 0.35524 -34.86801 -20.94503 1600000 56241 0.007112 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 137 -15.012 -16.257 -0.000 -12.711 IL 1 1 2 1 4 9 31 102 139 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 11 32 103 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - U - + MR 3 2 3 5 5 16 39 101 138 -15.061 -0.000 -14.876 -15.088 -15.980 -12.730 -5.008 -13.900 1.989 D 4 2 3 5 5 7 28 100 136 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 9 31 101 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 A U = = MP 6 5 3 10 6 17 38 100 137 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.037 -10.697 -12.232 3.426 -14.373 -15.527 -9.831 -12.275 -11.792 1.398 -12.462 1.384 -9.756 -13.537 -11.662 -10.830 ML 7 5 3 10 6 8 30 98 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 8 30 98 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 5 25 95 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 9 30 100 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 9 31 99 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 G C = = MP 12 11 6 16 6 17 37 98 135 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.597 -9.715 -11.597 0.313 -12.624 -4.466 -1.536 -12.229 -11.226 3.767 -4.912 -0.712 -7.881 -10.963 -3.340 -10.565 ML 13 11 6 16 6 8 30 96 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 8 30 96 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 5 25 93 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 9 30 98 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 9 30 97 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 C G = = MP 18 17 6 22 6 16 35 96 133 -15.995 -15.934 -0.002 -14.710 -9.921 -15.385 -12.996 -13.250 -12.336 -9.458 -10.697 -12.494 3.589 -4.327 -4.604 -3.662 -5.043 -11.588 0.589 -12.843 1.158 -5.388 ML 19 17 6 22 6 8 29 94 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 8 29 94 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 5 25 91 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 9 30 96 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 9 30 95 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 C G = = MP 24 23 6 28 6 14 33 94 131 -15.993 -15.932 -0.000 -14.709 -14.989 -15.384 -13.044 -13.325 -4.313 -3.325 -4.588 -12.506 3.491 -11.628 -12.466 -9.533 -12.586 -11.728 0.351 -12.878 1.717 -11.267 ML 25 23 6 28 6 8 28 92 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 8 29 93 129 -8.231 -6.960 -0.485 -6.939 -2.073 -5.152 -0.824 -1.907 1.465 -1.293 D 27 23 6 28 6 5 24 89 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 8 30 94 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 8 30 93 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 C G = = MP 30 29 6 34 6 12 31 92 129 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -11.241 -11.021 -2.174 -4.098 -6.107 -11.752 3.441 -10.561 -11.018 -6.669 -5.033 -1.543 0.646 -3.671 1.214 -1.007 ML 31 29 6 34 6 7 28 91 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 7 27 90 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 5 24 88 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 8 29 92 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 8 29 91 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 99 u g = = MP 36 35 6 40 6 10 29 90 127 -6.387 -15.934 -0.018 -14.710 -14.990 -15.385 -10.302 -10.005 -10.301 -0.985 -4.016 -6.329 2.184 -9.821 -10.160 -0.318 -3.860 -7.574 1.044 -2.503 2.871 -1.176 ML 37 35 6 40 6 7 27 89 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 7 26 89 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 5 24 86 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 9 28 89 126 -6.473 -6.736 -0.040 -8.392 -9.168 -8.828 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 8 27 89 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 98 G C = = MP 42 41 6 46 4 8 27 88 125 -15.218 -15.425 -0.000 -13.839 -13.606 -10.564 -14.991 0.090 -15.399 -11.843 -9.852 -14.782 -11.908 3.885 -12.141 -2.664 -10.169 -12.265 -12.232 -13.757 ML 43 41 6 46 4 6 25 88 124 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 6 25 87 123 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 5 23 86 122 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 7 26 89 125 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 7 26 88 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - + - ML 48 47 6 50 3 6 25 86 123 -16.127 -0.000 -14.781 0.582 -3.824 -1.593 1.071 D 49 47 6 50 3 4 23 85 121 -6.174 -1.687 -0.566 IL 50 50 3 50 3 6 25 87 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - + - ML 51 50 3 53 2 5 24 85 122 -5.756 -0.027 0.429 -5.173 1.345 -3.548 D 52 50 3 53 2 4 23 84 121 -8.445 -0.004 IL 53 53 3 53 2 5 24 85 122 -6.312 -0.018 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 4 23 84 121 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 3 40 59 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 3 40 59 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 22 41 -0.141 -5.276 -5.558 -4.435 [ MATP 15 ] 12 28 G U = = MP 58 57 1 62 6 2 3 22 41 -15.854 -15.793 -0.000 -14.570 -14.850 -15.245 -11.979 -10.544 -12.199 -1.989 -14.295 -14.384 -9.691 -12.237 -11.660 2.846 -12.291 3.097 -9.645 -13.233 -11.561 -10.799 ML 59 57 1 62 6 1 1 19 38 -11.623 -11.969 -6.683 -6.378 -0.308 -2.557 -6.461 -5.867 -7.358 1.987 MR 60 57 1 62 6 1 1 19 37 -11.887 -10.616 -6.525 -10.595 -0.166 -3.378 -4.246 -1.359 -4.982 1.818 D 61 57 1 62 6 0 0 16 34 -15.594 -14.292 -10.089 -10.771 -10.789 -0.003 IL 62 62 5 62 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 U A = = MP 64 63 6 68 6 2 2 20 39 -15.854 -15.793 -0.004 -14.570 -14.850 -8.733 -12.504 -12.166 -12.387 -11.785 -10.577 -12.242 -11.331 -12.077 -10.473 -11.784 -12.583 -12.086 3.996 -10.569 -5.807 -5.590 ML 65 63 6 68 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 18 36 -12.798 -11.527 -7.436 -11.505 -3.722 -0.124 0.248 -5.955 1.473 -5.594 D 67 63 6 68 6 0 0 15 33 -15.782 -14.480 -10.277 -10.959 -10.977 -0.003 IL 68 68 5 68 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 G C = = MP 70 69 6 74 6 2 3 18 37 -15.851 -15.790 -0.002 -14.566 -9.495 -15.241 -13.586 -5.176 -15.243 -0.199 -15.319 -11.644 -9.709 -14.952 -11.769 3.914 -11.985 -5.692 -10.045 -12.086 -12.118 -14.077 ML 71 69 6 74 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 19 38 -9.217 -7.946 -3.855 -7.924 -0.141 -6.138 -2.138 -2.024 -2.898 1.762 D 73 69 6 74 6 0 0 14 33 -16.588 -15.286 -11.083 -11.765 -11.783 -0.002 IL 74 74 5 74 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 25 a u = = MP 76 75 6 80 4 2 2 16 35 -15.071 -15.278 -0.123 -3.612 -0.174 -2.399 -2.279 2.420 -7.210 -8.069 -2.483 -5.128 -1.961 -1.158 -5.114 -2.895 2.173 -1.325 0.560 0.925 ML 77 75 6 80 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 18 37 -7.653 -6.682 -4.549 -0.085 0.104 -1.319 -1.662 1.143 D 79 75 6 80 4 0 0 14 33 -12.010 -11.692 -9.707 -0.003 IL 80 80 5 80 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 1 14 33 -15.857 -0.284 -2.485 1.355 -2.784 -3.200 0.248 D 83 81 6 84 3 0 0 11 30 -14.997 -10.510 -0.001 IL 84 84 3 84 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - u - + - ML 85 84 3 87 3 1 1 13 32 -15.574 -1.775 -0.499 -0.091 -1.599 -0.017 0.801 D 86 84 3 87 3 0 0 11 29 -15.898 -11.411 -0.001 IL 87 87 3 87 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - u - + - ML 88 87 3 90 3 1 1 13 32 -13.799 -2.982 -0.195 0.481 -2.609 -0.629 0.843 D 89 87 3 90 3 0 0 11 29 -17.226 -12.739 -0.000 IL 90 90 3 90 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - + - ML 91 90 3 93 3 1 1 14 33 -10.820 -3.924 -0.099 0.351 0.349 -3.023 0.409 D 92 90 3 93 3 0 0 11 29 -17.510 -3.213 -0.165 IL 93 93 3 93 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - + - ML 94 93 3 96 3 1 2 13 31 -12.900 -0.001 -11.554 1.175 -0.364 -0.068 -6.449 D 95 93 3 96 3 0 0 8 27 -17.384 -8.045 -0.005 IL 96 96 3 96 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - u - + - ML 97 96 3 99 3 1 1 11 30 -12.943 -1.595 -0.580 0.193 -1.305 -0.172 0.646 D 98 96 3 99 3 0 0 7 26 -17.378 -5.373 -0.035 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - U - + - ML 100 99 3 102 3 1 1 6 10 -0.507 -1.757 -10.670 -0.615 -5.242 -6.139 1.725 D 101 99 3 102 3 0 0 2 7 -17.460 -0.000 -11.852 IL 102 102 3 102 3 1 1 5 9 -6.253 -0.022 -8.953 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.026 -2.335 -1.311 0.447 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 26 45 -16.127 -0.000 -14.781 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - + - ML 109 108 2 111 5 1 1 26 45 -5.010 -0.046 -14.876 -15.088 -15.980 0.540 -4.811 1.220 -2.470 D 110 108 2 111 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 26 45 -6.917 -0.019 -8.595 -10.428 -9.701 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 48 U A = = MP 112 111 3 116 6 2 2 25 44 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -3.796 -6.088 -2.877 -2.218 -5.248 -10.602 0.691 -6.262 -1.526 -5.506 -10.219 -1.684 3.446 -1.942 0.359 -0.355 ML 113 111 3 116 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 47 u a = = MP 118 117 6 122 6 2 2 23 42 -15.995 -6.415 -0.017 -14.710 -14.990 -15.385 -10.292 -9.994 -10.293 0.577 -5.339 -11.137 2.598 -7.004 -10.151 -1.425 -10.664 -2.856 2.750 -5.469 -0.182 -1.861 ML 119 117 6 122 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 22 41 -5.618 -0.046 -9.130 -7.297 -8.403 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 45 g c = = MP 124 123 6 128 6 2 2 21 40 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -9.965 -3.980 -9.783 2.902 -4.952 -5.010 -2.728 -10.473 -10.221 2.968 -10.467 -3.121 -2.002 -9.637 -7.988 -4.366 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 44 a u = = MP 130 129 6 134 6 2 2 19 38 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -12.115 -3.925 -12.334 2.996 -14.433 -14.561 -9.832 -12.373 -11.801 2.950 -12.433 -2.160 -9.784 -13.381 -11.699 -10.934 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 43 A U = = MP 136 135 6 140 4 2 2 17 35 -15.218 -15.425 -0.000 -13.839 -12.035 -0.055 -3.881 3.627 -14.367 -15.507 -9.823 -3.461 -11.791 1.005 -12.460 -1.163 -9.749 -4.972 -11.654 -4.889 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - + - ML 142 141 6 144 3 1 1 14 33 -16.127 -0.000 -14.781 -3.614 -1.544 -2.560 1.768 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.127 -0.000 -14.781 -5.245 -11.437 -13.226 1.990 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.127 -0.000 -14.781 -10.685 -4.359 1.982 -11.396 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - * - ML 151 150 3 153 3 1 1 10 29 -16.127 -0.000 -14.781 -10.457 1.982 -4.348 -9.927 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.127 -0.000 -14.781 2.000 -12.065 -11.312 -11.398 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - + - ML 157 156 3 159 3 1 1 7 26 -16.127 -0.000 -14.781 1.984 -6.229 -5.892 -6.149 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.771 -5.980 -0.852 -5.954 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 3 55 91 -16.127 -0.000 -14.781 IL 165 165 2 165 3 1 4 57 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - + - ML 166 165 2 168 3 1 3 55 91 -16.127 -0.000 -14.781 1.708 -2.361 -2.379 -1.531 D 167 165 2 168 3 0 1 53 89 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 3 56 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - G - + - ML 169 168 3 171 2 1 2 54 90 -16.782 -0.000 -1.167 -2.250 1.704 -3.552 D 170 168 3 171 2 0 1 53 89 -8.445 -0.004 IL 171 171 3 171 2 1 2 54 91 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 1 53 89 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -7.818 -14.122 -13.529 -0.007 [ MATP 48 ] 51 68 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 21 40 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 67 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 66 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 17 36 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 65 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 15 34 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 55 64 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 56 63 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.009 -18.707 -14.504 -15.186 -15.204 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 57 62 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.431 -15.112 -13.128 -0.000 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 8 27 -17.544 -13.057 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 7 25 -17.544 -13.057 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 5 24 -17.544 -13.057 -0.000 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 1 45 82 -16.127 -0.000 -14.781 IL 230 230 2 230 3 1 1 47 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - A - + - ML 231 230 2 233 3 1 2 45 82 -5.703 -0.028 -14.781 1.531 -3.960 -0.572 -1.426 D 232 230 2 233 3 0 0 43 80 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 45 82 -5.225 -0.045 -7.925 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - A - + - ML 234 233 3 236 5 1 1 44 81 -15.061 -0.000 -14.876 -15.088 -15.980 1.024 -0.403 -2.543 0.054 D 235 233 3 236 5 0 0 43 79 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 44 81 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 72 97 G C = = MP 237 236 3 241 6 2 2 43 80 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -13.628 -4.049 -15.055 -0.232 -15.410 -11.833 -9.852 -14.834 -2.879 3.885 -12.139 -2.483 -10.173 -12.258 -12.237 -13.831 ML 238 236 3 241 6 1 1 42 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 42 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 39 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 43 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 42 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 73 96 C G = = MP 243 242 6 247 6 2 2 41 78 -15.995 -15.934 -0.000 -14.710 -14.990 -15.385 -10.293 -4.656 -10.294 -1.265 -4.457 -11.138 3.314 -9.812 -10.152 0.401 -10.665 -3.698 1.190 -6.288 0.822 -3.523 ML 244 242 6 247 6 1 1 40 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 41 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 37 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 41 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 41 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 74 95 A U = = MP 249 248 6 253 6 2 2 39 76 -6.403 -15.934 -0.041 -9.153 -14.990 -6.092 -9.974 -1.834 -4.972 3.503 -10.922 -6.283 0.075 -3.819 -4.557 1.258 -10.477 -0.806 -2.347 -9.650 -7.997 -8.758 ML 250 248 6 253 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 35 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 38 75 -6.458 -6.721 -0.041 -8.376 -9.153 -8.813 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 39 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 76 94 G C = = MP 255 254 6 259 6 2 2 37 74 -15.971 -15.910 -0.268 -3.108 -6.937 -4.468 -9.947 -4.393 -9.767 0.345 -10.878 -10.363 1.354 -10.450 -10.201 3.460 -10.449 -1.449 -0.901 -9.622 -2.224 -8.730 ML 256 254 6 259 6 1 1 39 75 -8.140 -8.486 -3.200 -0.210 -8.336 -5.865 1.710 -2.332 -1.968 -1.871 MR 257 254 6 259 6 1 1 40 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 28 65 -13.972 -12.670 -8.467 -9.149 -9.167 -0.009 IL 259 259 5 259 6 1 1 37 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 37 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 77 93 g c = = MP 261 260 6 265 4 2 2 34 70 -5.667 -15.132 -0.215 -3.071 -9.430 -0.177 -3.527 2.199 -10.205 0.327 0.567 -0.825 -9.688 2.387 -9.988 -0.838 -1.549 -1.678 -1.056 -2.267 ML 262 260 6 265 4 1 1 38 74 -2.294 -11.036 -0.332 -9.765 -7.981 1.448 -9.039 0.340 MR 263 260 6 265 4 1 1 40 76 -8.575 -0.264 -5.471 -2.815 -4.078 -5.587 1.958 -4.812 D 264 260 6 265 4 0 0 26 62 -11.371 -11.052 -1.395 -0.692 IL 265 265 5 265 4 1 1 40 76 -7.463 -0.021 -6.895 -10.632 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 39 75 -0.732 -1.411 -5.499 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - U - + - ML 267 266 6 269 3 1 1 19 35 -5.896 -0.031 -7.885 -2.126 0.474 -1.839 1.072 D 268 266 6 269 3 0 0 18 34 -14.684 -0.215 -2.855 IL 269 269 3 269 3 1 1 19 35 -4.852 -0.059 -7.552 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - U - + - ML 270 269 3 272 3 1 1 18 34 -16.094 -0.026 -5.819 -2.297 -2.058 -1.462 1.675 D 271 269 3 272 3 0 0 16 33 -12.088 -1.657 -0.551 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 82 - A - + - ML 273 272 3 275 3 1 1 17 33 -16.079 -0.005 -8.145 1.063 -0.237 -1.082 -0.761 D 274 272 3 275 3 0 0 15 32 -12.621 -0.938 -1.065 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 83 - A - + - ML 276 275 3 278 3 1 1 16 32 -6.215 -0.021 -9.695 1.502 -3.889 -0.062 -2.824 D 277 275 3 278 3 0 0 14 30 -11.847 -2.865 -0.214 IL 278 278 3 278 3 1 1 16 32 -4.731 -0.064 -7.431 0.000 0.000 0.000 0.000 [ MATL 72 ] 85 - a - + - ML 279 278 3 281 3 1 1 15 31 -16.102 -0.023 -5.987 0.900 -0.035 -2.059 -0.123 D 280 278 3 281 3 0 0 14 30 -11.739 -7.252 -0.010 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 86 - u - + - ML 282 281 3 284 3 1 1 14 30 -4.580 -0.958 -1.173 0.173 -0.395 -0.499 0.490 D 283 281 3 284 3 0 0 14 30 -3.307 -5.649 -0.186 IL 284 284 3 284 3 1 1 16 32 -1.653 -0.555 -9.589 0.000 0.000 0.000 0.000 [ MATL 74 ] 89 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.855 -0.157 0.068 0.587 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Cys-2nd-align LENG 90 MAXL 156 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:50 2015 COM [1] cmbuild --hand --enone Cys-final-vert.cm ../Cys-2nd-align.sto NSEQ 1085 EFFN 22.991848 CKSUM 4203025139 STATS LOCAL MSV -8.8759 0.71872 STATS LOCAL VITERBI -9.3530 0.71872 STATS LOCAL FORWARD -3.6875 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36746 1.53071 1.30313 1.35796 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 0.00000 * 1 0.42816 5.36973 1.08842 4.97753 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 2 2.11979 3.00021 0.23963 3.14090 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 3 3.60680 0.39176 3.14189 1.37122 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01000 5.39873 5.21592 1.46634 0.26236 1.09861 0.40547 4 3.90242 0.39480 4.21921 1.23346 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39782 5.39782 1.46634 0.26236 0.98052 0.47019 5 2.76226 0.57058 2.52607 1.23210 5 C = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 6 2.48412 1.23123 2.22652 0.66017 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02007 4.17707 5.39873 0.51179 0.91485 1.09861 0.40547 7 2.72444 5.38878 0.07806 5.31096 8 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 8 1.03651 2.80180 2.24001 0.73783 9 u + - , 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 9 1.14228 3.76246 0.48278 3.20355 10 G + - , 1.38629 1.38629 1.38629 1.38629 0.09061 3.85410 2.72670 0.38295 1.14522 1.09861 0.40547 10 3.14240 4.76000 0.07442 3.91319 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.03504 5.33588 3.51938 1.46634 0.26236 2.80150 0.06264 11 5.59964 5.22219 5.85191 0.01204 13 U = - < 1.38629 1.38629 1.38629 1.38629 0.01204 5.31077 4.95820 1.46634 0.26236 3.07360 0.04736 12 2.85821 5.22770 0.07109 5.13475 14 G = - < 1.38629 1.38629 1.38629 1.38629 0.01117 5.30868 5.08934 1.46634 0.26236 3.09296 0.04643 13 1.12006 2.11233 1.99737 0.87445 15 u = - < 1.38629 1.38629 1.38629 1.38629 0.08647 5.30746 2.55255 1.46634 0.26236 3.10403 0.04591 14 0.53170 2.65084 2.80434 1.26849 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.18468 5.23174 1.81226 1.46634 0.26236 3.61111 0.02739 15 1.35113 2.11374 1.48299 0.93316 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.97569 5.05983 0.48334 1.46634 0.26236 4.19811 0.01514 16 1.13624 2.01827 1.73784 0.99374 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.91056 4.11726 0.54229 1.46634 0.26236 5.09212 0.00616 17 1.20628 1.47733 1.88666 1.13673 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.28883 3.28457 1.54456 1.46634 0.26236 2.19623 0.11791 18 0.85582 1.73623 1.54334 1.68622 20 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04768 3.76023 3.76023 1.46634 0.26236 4.69766 0.00916 19 1.22653 1.78175 1.60637 1.08549 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.48181 3.77528 1.02331 1.46634 0.26236 3.53539 0.02958 20 1.49128 1.90375 2.17323 0.66924 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.36341 1.29254 3.50248 0.20659 1.67852 0.01053 4.55874 21 0.77224 2.45287 2.10158 1.10953 24 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09730 5.39873 2.42824 1.46634 0.26236 1.09861 0.40547 22 1.19556 2.07802 1.59507 0.99589 25 u = - > 1.38629 1.38629 1.38629 1.38629 0.00992 5.31135 5.31135 1.46634 0.26236 3.06812 0.04762 23 5.04688 0.07940 5.05077 2.75674 26 C = - > 1.38629 1.38629 1.38629 1.38629 0.00992 5.31135 5.31135 1.46634 0.26236 0.87517 0.53921 24 0.02701 5.59712 4.12423 4.99685 27 A = - > 1.38629 1.38629 1.38629 1.38629 0.03019 5.34989 3.68946 1.46634 0.26236 2.26120 0.11007 25 4.60676 0.79957 4.73345 0.63168 28 U = - > 1.38629 1.38629 1.38629 1.38629 0.00972 5.33144 5.33144 1.46634 0.26236 0.12218 2.16276 26 1.08049 3.58492 0.56370 2.75310 29 G + - , 1.38629 1.38629 1.38629 1.38629 0.03772 3.42661 5.39873 0.25830 1.48000 1.09861 0.40547 27 2.19749 1.79519 2.11200 0.50779 31 U = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 28 2.20091 1.00447 2.50369 0.81809 32 u = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 29 0.95479 3.12366 0.65844 2.92893 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 30 0.76003 4.50966 0.67828 4.27911 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 31 0.34924 3.60922 1.43793 3.49711 35 A = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 32 3.28010 2.41145 3.08652 0.18991 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 33 4.11257 4.37871 5.05226 0.03594 37 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 34 4.88431 4.43025 0.02450 5.35514 38 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 35 4.91964 0.03279 4.23260 4.56181 39 C * - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 36 0.00936 6.04536 5.60010 5.72939 40 A * - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 37 0.02559 4.90803 4.65176 4.78729 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 38 0.18777 4.25111 1.95390 4.18488 42 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 39 3.86343 1.39168 3.47663 0.35748 43 U = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 40 4.49932 0.71909 4.30306 0.71711 44 u = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 41 3.14974 0.69891 3.01577 0.88916 45 c = - > 1.38629 1.38629 1.38629 1.38629 0.01985 4.19078 5.39873 0.51805 0.90556 1.09861 0.40547 42 0.99015 2.70655 0.86592 1.95867 47 g = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 43 0.67510 2.38170 1.42770 1.84113 48 A = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 44 0.24952 2.76343 2.82751 2.31680 49 A + - , 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 45 2.08270 2.80992 0.25952 3.12871 50 G + - , 1.38629 1.38629 1.38629 1.38629 2.40299 5.39873 0.09979 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 47 1.80275 1.30601 1.07738 1.49713 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 48 1.80023 1.30678 1.07832 1.49662 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 49 1.79907 1.30714 1.07876 1.49639 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 50 1.79858 1.30729 1.07894 1.49629 55 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 51 1.79843 1.30734 1.07900 1.49626 56 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 52 1.79843 1.30734 1.07900 1.49626 57 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 53 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 54 1.13112 1.65303 1.51838 1.32128 59 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 55 1.13112 1.65303 1.51838 1.32128 60 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 56 1.13112 1.65303 1.51838 1.32128 61 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 57 1.72973 1.22043 1.16230 1.53806 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 58 1.72969 1.22045 1.16231 1.53804 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 59 1.72974 1.22043 1.16229 1.53806 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 60 1.72997 1.22033 1.16221 1.53813 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 61 1.73049 1.22011 1.16202 1.53828 66 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 62 1.73153 1.21966 1.16164 1.53859 67 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.30889 0.00496 63 1.73350 1.21882 1.16092 1.53917 68 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.00994 4.61574 64 0.37530 3.21362 1.81878 2.20293 69 A + - , 1.38629 1.38629 1.38629 1.38629 0.02671 3.82439 5.39873 0.37275 1.16744 1.09861 0.40547 65 0.77232 1.65897 2.54896 1.31096 71 a + - , 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 66 2.80159 5.09897 0.07631 5.01236 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 67 2.75696 0.61760 2.12805 1.27938 73 C = - < 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 68 0.59114 2.42604 1.19934 2.87309 74 A = - < 1.38629 1.38629 1.38629 1.38629 0.03357 4.18497 4.02906 0.51538 0.90949 1.09861 0.40547 69 2.07147 1.94252 0.42074 2.60239 76 G = - < 1.38629 1.38629 1.38629 1.38629 0.05904 5.38537 2.94231 1.46634 0.26236 1.78071 0.18455 70 1.30012 1.41047 1.24730 1.62866 77 g = - < 1.38629 1.38629 1.38629 1.38629 0.15215 3.14409 2.32247 0.21014 1.66321 0.93778 0.49675 71 2.30420 1.10926 2.47731 0.72074 79 u + - _ 1.38629 1.38629 1.38629 1.38629 0.02937 3.90897 4.72379 0.45334 1.00924 0.20961 1.66547 72 2.66482 2.60509 2.43806 0.26245 81 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02546 5.37834 3.88633 1.46634 0.26236 1.12779 0.39119 73 0.75202 1.58350 2.00636 1.66679 82 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01254 5.36892 4.85327 1.46634 0.26236 0.76800 0.62351 74 0.37557 3.37646 1.49382 2.91096 83 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02261 4.09200 5.17532 0.48179 0.96149 1.50363 0.25144 75 0.85200 1.46181 2.38697 1.38743 85 a + - _ 1.38629 1.38629 1.38629 1.38629 0.02048 5.38282 4.15526 1.46634 0.26236 1.87009 0.16737 76 1.24292 1.65338 1.71796 1.07696 86 u + - _ 1.38629 1.38629 1.38629 1.38629 0.56630 3.09643 0.94889 0.45518 1.00604 2.08266 0.13307 77 1.59981 1.53752 1.46227 1.04571 89 u + - _ 1.38629 1.38629 1.38629 1.38629 0.29605 2.55010 1.72498 0.61123 0.78237 0.11126 2.25098 78 2.08357 1.04528 1.58342 1.14367 93 c = - > 1.38629 1.38629 1.38629 1.38629 0.01054 5.25139 5.25139 1.46634 0.26236 0.17263 1.84165 79 2.90310 0.47087 1.83262 1.82825 94 C = - > 1.38629 1.38629 1.38629 1.38629 0.00922 5.38379 5.38379 1.46634 0.26236 0.38351 1.14402 80 3.05974 1.31279 2.35175 0.52962 95 U = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 81 1.72033 2.22333 0.45931 2.51303 96 G = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 82 4.40499 0.09677 4.94885 2.61829 97 C = - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 83 5.37737 0.09242 5.27135 2.54439 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 84 1.74640 2.29280 0.49522 2.16129 99 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 85 1.90463 2.86487 0.36824 2.28099 100 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 86 2.28325 4.37927 0.14527 3.87664 101 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 87 2.04475 3.38959 0.22498 3.26138 102 G = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 88 3.51930 0.29685 2.80645 1.79091 103 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 89 5.17621 1.74578 5.14404 0.20579 104 U = - ) 1.38629 1.38629 1.38629 1.38629 0.00909 5.39873 5.39873 1.46634 0.26236 1.09861 0.40547 90 4.86102 4.10153 5.39280 0.02926 105 U + - : 1.38629 1.38629 1.38629 1.38629 0.00455 5.39419 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Phe.cm0000644000543100007160000017236612573631164021416 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Phe STATES 289 NODES 76 CLEN 90 W 104 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:55:02 2015 COM [1] cmbuild --hand --enone Phe_model.cm aligntRNAdb-Phe.sto COM [2] cmcalibrate --seed 208 Phe_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1384 EFFN 1384.000000 CKSUM 788920421 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7273 0.71867 ECMLC 0.65995 -6.40172 2.69942 1600000 487174 0.002463 ECMGC 0.28836 -33.71144 -17.73136 1600000 40116 0.009971 ECMLI 0.62665 -5.89712 3.47035 1600000 425164 0.002822 ECMGI 0.30550 -29.53656 -14.56125 1600000 38811 0.010306 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 104 136 -15.362 -16.608 -0.005 -8.327 IL 1 1 2 1 4 16 34 105 137 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 35 106 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 128 - A - + MR 3 2 3 5 5 23 42 104 136 -15.407 -0.140 -15.222 -3.438 -16.326 1.877 -3.196 -2.339 -5.685 D 4 2 3 5 5 13 32 101 133 -7.884 -2.024 -5.510 -6.941 -0.474 IR 5 5 3 5 5 17 36 104 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 127 G C = = MP 6 5 3 10 6 24 43 103 136 -16.201 -16.140 -0.000 -14.917 -15.197 -15.592 -10.169 -5.140 -9.987 1.157 -11.118 -10.583 -1.370 -10.678 -6.713 3.611 -10.672 -2.278 -0.250 -7.340 -4.224 -5.682 ML 7 5 3 10 6 16 35 101 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 20 39 101 133 -14.316 -13.045 -2.753 -13.023 -0.233 -11.236 -8.820 1.997 -9.357 -7.705 D 9 5 3 10 6 13 31 97 130 -11.923 -10.622 -6.419 -7.101 -7.118 -0.040 IL 10 10 5 10 6 17 35 103 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 17 36 102 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 126 U A = = MP 12 11 6 16 6 22 41 101 134 -16.222 -16.162 -0.001 -14.938 -15.218 -11.356 -10.552 -10.254 -10.549 -1.226 -2.436 -11.387 2.213 -10.065 -4.528 -1.526 -10.919 -4.937 3.267 -10.733 -0.520 -9.127 ML 13 11 6 16 6 16 34 99 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 19 38 99 132 -14.087 -12.816 -8.725 -12.795 -0.005 -11.008 1.997 -8.905 -8.148 -8.267 D 15 11 6 16 6 13 31 97 129 -11.923 -10.622 -6.419 -7.101 -7.118 -0.040 IL 16 16 5 16 6 17 35 101 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 36 100 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 125 U A = = MP 18 17 6 22 6 21 39 99 132 -16.222 -6.621 -0.015 -14.938 -15.217 -15.612 -2.257 -5.397 -2.444 -1.455 -2.584 -4.228 1.444 -6.271 -3.996 -1.640 -5.582 -4.622 3.241 -3.156 0.884 -1.303 ML 19 17 6 22 6 15 33 97 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 19 37 98 131 -14.087 -12.816 -0.007 -12.795 -7.928 -11.008 -7.407 -9.180 1.996 -8.168 D 21 17 6 22 6 13 31 97 129 -12.081 -10.780 -0.350 -7.259 -7.276 -2.310 IL 22 22 5 22 6 15 34 99 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 36 98 131 -5.637 -0.045 -9.149 -7.316 -8.422 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 123 a a = = MP 24 23 6 28 6 19 37 97 130 -5.837 -6.567 -0.047 -8.171 -10.466 -15.734 2.017 -1.222 -1.298 0.981 -1.187 -4.517 1.453 -4.280 -1.725 -1.285 -3.487 -4.261 1.701 -3.586 0.738 -6.203 ML 25 23 6 28 6 14 33 95 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 14 32 95 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 29 92 124 -9.935 -8.633 -4.430 -5.113 -5.130 -0.164 IL 28 28 5 28 6 18 36 96 128 -7.327 -7.590 -0.022 -9.245 -10.021 -9.681 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 35 96 128 -5.795 -0.041 -9.306 -7.474 -8.580 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 121 a u = = MP 30 29 6 34 6 18 35 95 127 -16.337 -16.276 -0.000 -15.053 -15.333 -15.728 -0.973 -1.821 -3.817 2.479 -2.340 -3.834 1.336 -3.417 -3.862 0.805 -2.991 -1.458 1.959 -2.923 -2.091 -3.127 ML 31 29 6 34 6 15 32 92 125 -9.231 -9.577 -4.292 -0.095 -9.427 -6.957 1.912 -3.955 -3.450 -3.649 MR 32 29 6 34 6 13 30 92 125 -8.118 -6.847 -2.756 -6.825 -1.959 -0.802 -0.778 1.211 -1.546 -0.396 D 33 29 6 34 6 11 29 90 123 -9.935 -8.633 -4.430 -5.113 -5.130 -0.164 IL 34 34 5 34 6 15 33 95 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 15 33 94 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 120 u a = = MP 36 35 6 40 6 16 33 93 125 -6.328 -16.276 -0.018 -15.053 -15.333 -15.728 -4.504 -6.497 -4.573 1.100 -2.248 -8.788 1.945 -8.258 -6.834 -0.509 -7.314 -1.116 2.868 -4.254 0.161 -4.518 ML 37 35 6 40 6 14 31 91 124 -9.231 -9.577 -4.292 -0.095 -9.427 -6.957 -3.598 1.893 -4.344 -2.704 MR 38 35 6 40 6 13 31 91 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 11 29 90 122 -10.893 -9.591 -1.943 -6.071 -6.088 -0.497 IL 40 40 5 40 6 15 32 92 124 -6.852 -7.115 -0.031 -8.770 -9.546 -9.206 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 14 32 92 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 119 G C = = MP 42 41 6 46 4 14 31 91 123 -15.562 -6.773 -0.013 -14.183 -10.306 -6.268 -10.124 1.567 -11.255 -10.719 -2.208 -10.814 -2.230 3.534 -5.429 -1.312 -1.125 -9.978 -5.363 -3.386 ML 43 41 6 46 4 13 30 90 122 -6.376 -6.558 -0.071 -5.288 -3.003 -2.757 -3.783 1.870 MR 44 41 6 46 4 11 29 90 122 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 11 29 89 121 -5.963 -5.644 -0.517 -1.914 IL 46 46 5 46 4 13 31 91 124 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 13 30 90 123 -4.565 -0.072 -7.265 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 12 29 89 121 -16.478 -0.000 -15.132 -3.177 -5.994 -10.367 1.953 D 49 47 6 50 3 10 28 88 120 -6.174 -1.687 -0.566 IL 50 50 3 50 3 12 30 90 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 11 28 88 120 -6.769 -0.013 1.938 -5.677 -3.082 -5.043 D 52 50 3 53 2 10 27 87 119 -8.445 -0.004 IL 53 53 3 53 2 11 28 88 120 -5.687 -0.028 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 10 27 87 119 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 17 51 77 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 17 51 77 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 32 52 -0.000 -14.472 -13.879 -14.519 [ MATP 15 ] 13 35 G C = = MP 58 57 1 62 6 2 3 32 52 -16.344 -16.283 -0.000 -15.059 -15.339 -15.734 -3.627 -2.761 -10.130 -1.100 -11.260 -6.042 -1.737 -10.820 -10.568 3.755 -10.814 0.251 -2.107 -9.984 -5.122 -4.801 ML 59 57 1 62 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 34 C G = = MP 64 63 6 68 6 2 3 30 50 -16.344 -16.283 -0.000 -15.059 -15.339 -15.734 -13.357 -13.613 -12.692 -2.983 -11.052 -12.848 3.863 -3.627 -12.790 -2.415 -12.919 -11.961 -0.380 -1.978 -5.249 -11.590 ML 65 63 6 68 6 1 1 29 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 26 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 33 U A = = MP 70 69 6 74 6 2 3 28 48 -16.344 -16.283 -0.000 -15.059 -15.339 -15.734 -13.397 -13.679 -12.715 -2.156 -5.080 -12.859 -2.362 -11.980 -12.818 -9.887 -12.938 -12.083 3.936 -13.231 -2.049 -11.620 ML 71 69 6 74 6 1 1 27 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 28 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 27 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 32 U A = = MP 76 75 6 80 4 2 3 26 46 -15.568 -15.775 -0.001 -10.254 -3.741 -13.678 -12.714 -2.438 -5.742 -12.859 -0.570 -11.980 -12.818 -9.885 -12.938 -12.080 3.706 -13.231 0.983 -5.645 ML 77 75 6 80 4 1 1 27 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - + - ML 82 81 6 84 3 1 2 24 44 -16.477 -0.002 -9.255 1.953 -12.174 -2.961 -11.657 D 83 81 6 84 3 0 0 22 41 -8.017 -3.530 -0.137 IL 84 84 3 84 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - + - ML 85 84 3 87 3 1 1 23 43 -16.474 -0.499 -1.775 1.229 -0.222 -3.799 -0.459 D 86 84 3 87 3 0 0 21 41 -9.347 -4.860 -0.053 IL 87 87 3 87 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - u - + - ML 88 87 3 90 3 1 1 22 42 -15.976 -1.111 -0.897 0.125 0.011 -4.375 0.890 D 89 87 3 90 3 0 0 21 40 -16.131 -11.645 -0.000 IL 90 90 3 90 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - + - ML 91 90 3 93 3 1 1 22 41 -2.128 -1.732 -1.088 -1.163 0.084 -4.999 1.300 D 92 90 3 93 3 0 0 21 40 -17.326 -0.063 -4.548 IL 93 93 3 93 3 1 1 22 42 -2.999 -0.224 -5.757 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - + - ML 94 93 3 96 3 1 1 21 40 -16.185 -0.004 -8.448 1.163 -1.023 -0.340 -1.062 D 95 93 3 96 3 0 0 18 38 -15.455 -2.332 -0.319 IL 96 96 3 96 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - u - + - ML 97 96 3 99 3 1 1 20 39 -16.244 -0.474 -1.836 0.043 -0.124 -0.048 0.117 D 98 96 3 99 3 0 0 16 36 -15.159 -7.049 -0.011 IL 99 99 3 99 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - + - ML 100 99 3 102 3 1 1 19 39 -1.219 -0.810 -14.426 -1.990 -0.374 -3.005 1.512 D 101 99 3 102 3 0 0 16 36 -3.614 -0.124 -10.919 IL 102 102 3 102 3 1 1 19 39 -1.341 -0.724 -12.838 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.966 -5.543 -5.667 -4.297 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 3 35 61 -16.478 -0.000 -15.132 IL 108 108 2 108 3 1 1 37 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - A - + - ML 109 108 2 111 5 1 3 35 61 -6.920 -0.012 -15.226 -15.439 -16.330 1.603 -5.742 -0.345 -2.675 D 110 108 2 111 5 0 0 35 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 35 61 -5.473 -0.051 -7.152 -8.985 -8.258 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 56 U A = = MP 112 111 3 116 6 2 4 33 60 -16.344 -16.283 -0.047 -15.059 -4.956 -15.734 -3.164 -8.511 -6.201 1.534 -0.662 -9.386 -0.153 -5.450 -2.294 -1.703 -9.142 -4.262 3.322 -3.076 -0.653 -3.323 ML 113 111 3 116 6 1 1 32 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 37 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 55 a u = = MP 118 117 6 122 6 2 4 24 50 -16.296 -16.236 -0.000 -15.012 -15.292 -15.687 -10.264 -2.514 -10.083 2.672 -11.210 -10.679 0.004 -10.772 -10.521 2.543 -10.767 0.253 0.280 -5.699 -3.307 -3.513 ML 119 117 6 122 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 36 63 -12.822 -11.551 -7.460 -11.529 -0.011 -9.743 -7.029 1.990 -7.489 -6.087 D 121 117 6 122 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 40 54 a u = = MP 124 123 6 128 6 2 3 22 47 -16.296 -16.236 -0.018 -15.012 -6.355 -15.687 -10.292 -0.631 -10.112 2.932 -11.246 -10.714 -3.082 -10.799 -10.545 2.798 -10.794 -2.362 -1.325 -9.971 -5.241 -5.581 ML 125 123 6 128 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 35 62 -12.822 -0.025 -7.460 -11.529 -6.663 -9.743 -7.029 1.990 -7.489 -6.087 D 127 123 6 128 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 34 61 -1.015 -0.990 -11.798 -9.965 -11.071 0.000 0.000 0.000 0.000 [ MATP 33 ] 41 51 C G = = MP 130 129 6 134 6 2 3 19 37 -16.327 -16.266 -0.000 -15.042 -15.322 -15.717 -12.878 -12.931 -12.396 -1.486 -4.072 -12.685 3.733 -11.721 -12.435 0.268 -12.655 -10.905 -0.216 -12.823 -2.201 -11.213 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 21 39 -11.418 -10.147 -6.055 -10.125 -0.030 -8.338 1.981 -6.165 -5.560 -5.777 D 133 129 6 134 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 50 A U = = MP 136 135 6 140 4 2 2 17 35 -15.551 -15.758 -0.000 -14.172 -6.730 -3.234 -7.234 3.692 -11.100 -11.226 -1.476 -2.450 -10.799 -0.107 -11.129 -1.467 -1.310 -10.474 -1.124 -1.991 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 20 38 -9.435 -8.464 -6.331 -0.024 1.981 -6.165 -5.560 -5.777 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - C - + - ML 142 141 6 144 3 1 2 14 32 -16.461 -0.000 -15.115 -6.064 1.586 -3.658 -0.145 D 143 141 6 144 3 0 0 15 33 -11.533 -7.046 -0.011 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.461 -0.000 -15.115 -4.139 -11.679 -13.374 1.979 D 146 144 3 147 3 0 0 14 32 -11.533 -0.024 -5.924 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.478 -0.000 -15.132 -5.211 -2.956 1.943 -11.669 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.478 -0.000 -15.132 1.935 -2.962 -4.387 -10.652 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - A - * - ML 154 153 3 156 3 1 1 9 27 -16.478 -0.000 -15.132 1.935 -12.060 -2.510 -11.611 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.478 -0.000 -15.132 0.705 -11.492 1.244 -11.356 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.776 -1.253 -4.662 -3.098 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 1 53 85 -16.478 -0.000 -15.132 IL 165 165 2 165 3 1 1 55 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 57 - A - + - ML 166 165 2 168 3 1 1 53 85 -16.478 -0.163 -3.226 1.690 -2.116 -1.274 -2.942 D 167 165 2 168 3 0 0 52 84 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 54 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - G - + - ML 169 168 3 171 2 1 1 52 85 -16.970 -0.000 -0.518 -3.813 1.642 -3.185 D 170 168 3 171 2 0 0 51 84 -12.954 -0.000 IL 171 171 3 171 2 1 1 53 85 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 0 51 84 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 45 -3.612 -14.472 -13.879 -0.123 [ MATP 48 ] 59 77 G C = = MP 174 173 1 178 6 2 2 29 48 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -10.680 -7.322 -12.929 -4.792 -12.299 -8.489 -6.615 -12.412 -8.689 3.991 -8.883 -5.252 -6.981 -8.954 -9.060 -11.985 ML 175 173 1 178 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 18 36 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 178 178 5 178 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 60 76 A C = = MP 180 179 6 184 6 2 2 27 46 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -8.804 3.980 -8.944 -3.822 -10.035 -11.511 -5.629 -8.903 -8.542 -4.164 -9.173 -4.810 -6.014 -10.164 -7.540 -7.565 ML 181 179 6 184 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 16 35 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 184 184 5 184 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 61 75 U A = = MP 186 185 6 190 6 2 2 25 44 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -12.282 -11.970 -12.115 -10.862 -10.333 -12.010 -8.997 -11.754 -10.335 -10.888 -12.314 -11.633 3.996 -10.442 -5.687 -5.496 ML 187 185 6 190 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 14 33 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 190 190 5 190 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 62 74 G C = = MP 192 191 6 196 6 2 2 23 42 -12.760 -12.699 -0.002 -11.476 -11.756 -12.151 -10.680 -7.322 -12.929 -4.792 -12.299 -8.489 -6.615 -12.412 -8.689 3.991 -8.883 -5.252 -6.981 -8.954 -9.060 -11.985 ML 193 191 6 196 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 32 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 196 196 5 196 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 63 73 G C = = MP 198 197 6 202 6 2 2 21 40 -12.760 -12.699 -4.018 -11.476 -11.756 -0.093 -10.680 -7.322 -12.929 -4.792 -12.299 -8.489 -6.615 -12.412 -8.689 3.991 -8.883 -5.252 -6.981 -8.954 -9.060 -11.985 ML 199 197 6 202 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 31 -20.242 -18.940 -14.737 -15.419 -15.437 -0.000 IL 202 202 5 202 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 64 72 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 30 -20.360 -19.058 -14.855 -15.537 -15.555 -0.000 IL 208 208 5 208 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 65 71 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 11 30 -15.782 -15.463 -4.019 -0.092 IL 214 214 5 214 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - A - + - ML 216 215 6 218 3 1 1 13 31 -12.486 -0.001 -11.141 1.646 -7.203 -0.223 -7.117 D 217 215 6 218 3 0 0 8 26 -17.803 -7.847 -0.006 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - a - + - ML 219 218 3 221 3 1 1 11 29 -12.575 -0.001 -11.229 0.686 -0.086 -4.946 0.502 D 220 218 3 221 3 0 0 6 25 -17.797 -13.310 -0.000 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - A - + - ML 222 221 3 224 3 1 1 7 12 -2.212 -0.986 -1.840 1.275 -5.542 -0.193 -0.548 D 223 221 3 224 3 0 0 3 8 -17.797 -13.310 -0.000 IL 224 224 3 224 3 1 1 6 11 -5.168 -0.047 -7.868 0.000 0.000 0.000 0.000 [ MATL 58 ] 70 - A - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.151 -4.926 0.166 -0.680 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 0 42 74 -16.478 -0.129 -3.551 IL 230 230 2 230 3 1 1 44 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 78 - A - + - ML 231 230 2 233 3 1 1 42 75 -3.215 -0.178 -6.853 1.608 -10.806 -0.241 -3.258 D 232 230 2 233 3 0 0 41 73 -14.350 -0.072 -4.354 IL 233 233 3 233 3 1 1 42 75 -3.188 -0.169 -10.706 0.000 0.000 0.000 0.000 [ MATL 62 ] 81 - U - + - ML 234 233 3 236 5 1 1 41 73 -15.394 -0.002 -9.515 -15.421 -16.313 -0.956 0.028 -2.814 1.216 D 235 233 3 236 5 0 0 34 67 -9.519 -5.362 -8.780 -2.536 -0.323 IL 236 236 3 236 5 1 1 41 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 82 117 G C = = MP 237 236 3 241 6 2 2 40 72 -16.325 -4.669 -0.191 -3.622 -8.228 -11.195 -13.801 -6.401 -14.954 1.533 -15.651 -12.239 -10.176 -14.810 -12.232 3.640 -12.485 -0.795 -10.471 -4.323 -12.522 -13.676 ML 238 236 3 241 6 1 1 39 72 -8.116 -8.462 -3.177 -0.214 -8.312 -5.842 1.703 -2.300 -1.939 -1.835 MR 239 236 3 241 6 1 1 35 68 -9.176 -7.905 -3.814 -7.883 -1.948 -0.600 -0.973 0.430 -1.772 0.888 D 240 236 3 241 6 0 0 32 65 -13.748 -12.446 -8.243 -8.925 -8.943 -0.011 IL 241 241 5 241 6 1 1 39 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 38 71 -2.440 -1.204 -11.369 -2.251 -2.545 0.000 0.000 0.000 0.000 [ MATP 64 ] 83 114 G C = = MP 243 242 6 247 6 2 2 38 70 -16.167 -16.106 -0.047 -5.133 -9.270 -8.819 -10.135 -0.899 -9.953 2.350 -11.084 -1.349 -2.219 -10.643 -10.392 3.026 -10.638 -0.315 -0.694 -5.311 -4.548 -3.083 ML 244 242 6 247 6 1 1 38 72 -13.610 -13.956 -8.670 -0.050 -13.806 -4.987 -2.837 1.936 -5.515 -6.497 MR 245 242 6 247 6 1 1 35 68 -11.631 -10.360 -4.730 -10.339 -0.183 -3.653 1.570 -1.193 -3.404 -1.005 D 246 242 6 247 6 0 0 31 65 -14.763 -13.462 -9.259 -5.175 -9.958 -0.045 IL 247 247 5 247 6 1 1 37 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 37 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 84 113 g c = = MP 249 248 6 253 6 2 2 35 68 -4.683 -3.292 -0.483 -8.146 -7.727 -2.888 -9.773 -2.146 -9.677 1.951 -6.890 -6.150 0.363 -6.293 -10.022 2.757 -7.664 -1.449 1.614 -3.301 -2.006 -4.639 ML 250 248 6 253 6 1 1 37 71 -13.969 -14.315 -7.132 -0.052 -14.165 -5.163 1.672 -1.001 -6.454 -1.723 MR 251 248 6 253 6 1 1 34 67 -11.626 -10.355 -6.264 -10.334 -0.352 -2.309 0.803 -2.132 0.944 -3.281 D 252 248 6 253 6 0 0 30 63 -15.080 -13.778 -9.575 -5.919 -10.275 -0.027 IL 253 253 5 253 6 1 1 36 70 -8.233 -8.496 -1.963 -0.912 -2.446 -5.484 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 35 67 -1.768 -1.369 -12.731 -1.649 -12.004 0.000 0.000 0.000 0.000 [ MATP 66 ] 86 110 c g = = MP 255 254 6 259 6 2 2 33 65 -15.765 -15.704 -0.708 -4.972 -5.409 -1.589 -7.715 -2.831 -7.893 1.556 -1.243 -3.203 2.428 -3.231 -4.440 1.221 -8.504 -4.811 2.032 -4.147 -1.688 -5.907 ML 256 254 6 259 6 1 1 36 70 -14.197 -14.543 -6.942 -0.201 -14.393 -3.040 -0.719 1.637 -2.727 -2.938 MR 257 254 6 259 6 1 1 33 66 -13.731 -2.749 -5.602 -3.302 -0.477 -6.542 1.272 -2.785 -0.902 -0.143 D 258 254 6 259 6 0 0 28 59 -17.604 -16.303 -12.100 -12.782 -12.799 -0.001 IL 259 259 5 259 6 1 1 33 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 32 63 -5.611 -0.046 -9.122 -7.290 -8.396 0.000 0.000 0.000 0.000 [ MATP 67 ] 87 108 c a = = MP 261 260 6 265 4 2 2 31 61 -14.312 -14.519 -0.293 -2.443 -4.039 -1.367 -6.486 1.082 2.324 -1.479 1.435 -3.518 -5.642 1.816 -5.735 -1.703 0.049 -2.828 -2.484 -4.525 ML 262 260 6 265 4 1 1 35 69 -2.279 -11.597 -0.431 -4.273 -0.802 1.665 -3.729 -2.468 MR 263 260 6 265 4 1 1 31 62 -11.723 -1.889 -1.514 -1.398 1.339 0.315 -2.523 -4.241 D 264 260 6 265 4 0 0 28 59 -14.414 -14.095 -1.371 -0.705 IL 265 265 5 265 4 1 1 37 71 -0.795 -9.215 -1.246 -11.701 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 31 62 -1.246 -1.218 -2.750 0.000 0.000 0.000 0.000 [ MATL 68 ] 91 - u - + - ML 267 266 6 269 3 1 1 29 60 -5.372 -0.035 -14.515 0.086 -0.080 -3.181 0.912 D 268 266 6 269 3 0 0 28 58 -7.155 -0.469 -1.885 IL 269 269 3 269 3 1 1 30 60 -1.573 -0.596 -8.737 0.000 0.000 0.000 0.000 [ MATL 69 ] 94 - U - + - ML 270 269 3 272 3 1 1 28 59 -16.335 -0.027 -5.760 -1.574 -2.214 -0.875 1.538 D 271 269 3 272 3 0 0 27 57 -14.491 -0.435 -1.941 IL 272 272 3 272 3 1 1 29 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 95 - c - + - ML 273 272 3 275 3 1 1 27 58 -16.417 -0.012 -6.870 0.474 0.708 -1.065 -1.001 D 274 272 3 275 3 0 0 25 56 -13.301 -0.853 -1.165 IL 275 275 3 275 3 1 1 28 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 96 - a - + - ML 276 275 3 278 3 1 1 26 57 -5.038 -0.268 -2.848 0.892 -1.772 0.342 -0.777 D 277 275 3 278 3 0 0 23 54 -12.670 -1.844 -0.471 IL 278 278 3 278 3 1 1 27 57 -2.024 -0.529 -4.031 0.000 0.000 0.000 0.000 [ MATL 72 ] 99 - A - + - ML 279 278 3 281 3 1 1 25 56 -16.232 -0.239 -2.713 1.443 -1.434 -2.392 -0.472 D 280 278 3 281 3 0 0 18 49 -15.225 -5.622 -0.030 IL 281 281 3 281 3 1 1 26 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 100 - A - + - ML 282 281 3 284 3 1 1 25 55 -3.943 -0.618 -1.820 1.178 -1.420 -1.381 -0.030 D 283 281 3 284 3 0 0 10 40 -16.073 -7.535 -0.008 IL 284 284 3 284 3 1 1 28 59 -0.873 -1.323 -4.205 0.000 0.000 0.000 0.000 [ MATL 74 ] 105 - u - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.285 0.377 -3.841 0.856 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Phe LENG 90 MAXL 150 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:55:03 2015 COM [1] cmbuild --hand --enone Phe_model.cm aligntRNAdb-Phe.sto NSEQ 1384 EFFN 24.404678 CKSUM 788920421 STATS LOCAL MSV -8.8111 0.71867 STATS LOCAL VITERBI -9.7029 0.71867 STATS LOCAL FORWARD -3.5395 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.11344 1.60002 1.48753 1.41161 1.38629 1.38629 1.38629 1.38629 0.09112 5.49410 2.48920 1.46634 0.26236 0.00000 * 1 1.79880 2.95745 0.35256 2.52992 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00897 5.41195 5.41195 1.46634 0.26236 2.12685 0.12694 2 2.78351 1.15986 2.57852 0.60009 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.00918 5.42537 5.35346 1.46634 0.26236 3.02235 0.04991 3 2.05816 1.55496 2.15111 0.60741 3 U = - ( 1.38629 1.38629 1.38629 1.38629 0.00885 5.42505 5.42505 1.46634 0.26236 0.10607 2.29623 4 1.07502 1.51283 2.05130 1.17165 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02509 3.90820 5.35925 0.36629 1.18190 1.12316 0.39341 5 1.11821 1.57762 1.71488 1.24937 6 a = - ( 1.38629 1.38629 1.38629 1.38629 0.00820 5.50111 5.50111 1.46634 0.26236 1.17177 0.37080 6 1.83006 1.33374 2.08316 0.79503 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01970 4.17175 5.50111 0.46496 0.98929 1.09986 0.40484 7 1.63648 3.13696 0.36086 2.73579 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00820 5.50142 5.50142 1.46634 0.26236 1.00591 0.45525 8 3.26881 3.87241 4.62545 0.07113 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 9 0.07006 4.22714 3.33376 4.05093 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.01664 4.38775 5.50204 0.56273 0.84316 1.09861 0.40547 10 2.32700 3.05878 0.21842 2.96277 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 11 3.84357 0.16179 3.54929 2.31047 14 C = - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 12 4.23570 3.33581 5.33999 0.05641 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 13 3.65690 2.49456 4.26982 0.13048 16 U = - < 1.38629 1.38629 1.38629 1.38629 0.00889 5.50204 5.34413 1.46634 0.26236 1.09861 0.40547 14 0.04230 5.33782 3.47199 5.19334 17 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00968 5.50135 5.19442 1.46634 0.26236 1.15407 0.37885 15 0.61124 1.57280 3.00169 1.60865 18 A + - _ 1.38629 1.38629 1.38629 1.38629 0.32090 5.49988 1.30779 1.46634 0.26236 1.26139 0.33304 16 1.30929 1.39653 2.86409 0.85449 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.66028 5.19018 0.73873 1.46634 0.26236 4.22962 0.01466 17 1.85854 1.38702 2.79794 0.62859 20 U + - _ 1.38629 1.38629 1.38629 1.38629 0.81275 1.69682 0.98591 0.22662 1.59565 0.05622 2.90641 18 0.69336 1.97309 1.64698 1.78111 23 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01238 5.32034 4.90429 1.46634 0.26236 1.60237 0.22492 19 1.30368 1.51837 1.48802 1.26026 24 u + - _ 1.38629 1.38629 1.38629 1.38629 0.26437 5.35539 1.48023 1.46634 0.26236 2.78606 0.06365 20 2.35603 1.66850 2.95864 0.40829 25 U + - _ 1.38629 1.38629 1.38629 1.38629 0.50748 0.93661 5.11080 0.48105 0.96269 0.02457 3.71830 21 0.04513 4.35510 4.36265 3.98765 31 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 22 0.27085 4.43237 1.61179 3.65526 32 A = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 23 0.07251 5.45997 3.00094 4.13804 33 A = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 24 2.59758 3.22449 0.15581 3.50501 34 G = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 25 3.14220 0.30026 2.90313 1.82429 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 26 0.30122 3.91666 1.66472 2.97715 36 A + - , 1.38629 1.38629 1.38629 1.38629 0.01579 4.45784 5.50204 0.59845 0.79776 1.09861 0.40547 27 1.60387 1.82780 2.18335 0.64350 38 U = - < 1.38629 1.38629 1.38629 1.38629 0.03834 5.50204 3.39515 1.46634 0.26236 1.09861 0.40547 28 1.06614 2.55113 0.74156 2.28964 39 g = - < 1.38629 1.38629 1.38629 1.38629 0.00844 5.47214 5.47214 1.46634 0.26236 2.32461 0.10294 29 0.86600 3.25834 0.72784 2.84787 40 g = - < 1.38629 1.38629 1.38629 1.38629 0.01972 5.47214 4.17802 1.46634 0.26236 0.21771 1.63146 30 3.11531 0.29918 2.35070 2.12942 41 C = - < 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 1.73127 0.19487 31 0.49213 2.44040 1.70423 2.12325 42 A = - < 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 1.73127 0.19487 32 3.52346 0.33669 3.56705 1.47782 43 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 1.73127 0.19487 33 3.71074 4.24684 4.88683 0.04742 44 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00828 5.49119 5.49119 1.46634 0.26236 0.43714 1.03812 34 4.07487 3.52346 0.05572 4.86604 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 35 0.07090 3.36743 3.86088 4.34916 46 A * - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 36 0.05557 5.21693 3.15868 5.09140 47 A * - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 37 0.87848 4.88740 0.56595 4.68553 48 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 38 0.18923 2.26858 3.74692 3.09318 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 39 2.52625 1.86277 2.18396 0.42740 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 40 2.26775 2.40767 0.28396 2.92560 51 G = - > 1.38629 1.38629 1.38629 1.38629 0.03834 3.39515 5.50204 0.77885 0.61421 1.09861 0.40547 41 3.02678 0.72335 3.05152 0.86960 54 c = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 42 2.47356 0.86982 2.41109 0.89901 55 c = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 43 0.68557 2.36991 1.69159 1.52104 56 A = - > 1.38629 1.38629 1.38629 1.38629 0.00819 5.50204 5.50204 1.46634 0.26236 1.09861 0.40547 44 0.25213 2.69443 2.27046 2.95631 57 A + - , 1.38629 1.38629 1.38629 1.38629 0.11153 5.50204 2.28816 1.46634 0.26236 1.09861 0.40547 45 1.74464 3.37113 0.29852 3.01545 58 G + - , 1.38629 1.38629 1.38629 1.38629 2.40386 5.39960 0.09969 1.46634 0.26236 0.37131 1.17063 46 2.45379 3.02211 0.20588 2.96809 59 G = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 47 0.52746 2.42017 1.47619 2.38072 60 A = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 48 2.72245 1.73612 2.45629 0.39700 61 U = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 49 2.43308 3.00008 0.21145 2.93675 62 G = - < 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 50 2.43184 2.99875 0.21179 2.93487 63 G = - < 1.38629 1.38629 1.38629 1.38629 0.68157 3.67730 0.75740 1.46634 0.26236 5.34067 0.00480 51 1.79926 1.30708 1.07869 1.49643 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.42139 0.00443 52 1.79931 1.30707 1.07867 1.49644 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.72995 0.06745 53 0.58506 2.31131 1.61705 1.92889 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05757 3.57663 3.57663 1.46634 0.26236 4.72234 0.00893 54 1.13006 1.53305 2.03938 1.10564 67 u + - _ 1.38629 1.38629 1.38629 1.38629 0.05613 3.60121 3.60121 1.46634 0.26236 5.35446 0.00474 55 0.87052 2.01212 1.57570 1.42421 68 a + - _ 1.38629 1.38629 1.38629 1.38629 0.29601 2.16093 1.95898 0.42088 1.06848 5.35446 0.00474 56 0.94179 1.96199 1.48112 1.41837 70 a + - _ 1.38629 1.38629 1.38629 1.38629 0.48476 3.48049 1.04026 1.46634 0.26236 5.37397 0.00465 57 1.73058 1.22007 1.16199 1.53831 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 5.42139 0.00443 58 1.73051 1.22010 1.16201 1.53829 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.50148 0.08552 59 3.12612 0.24896 2.82846 2.14220 73 C = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 60 3.12807 0.24873 2.82929 2.14259 74 C = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 61 0.45115 2.63314 1.57299 2.47896 75 A = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 62 2.60004 0.48917 2.22953 1.58466 76 C = - > 1.38629 1.38629 1.38629 1.38629 0.05191 3.67730 3.67730 1.46634 0.26236 5.34067 0.00480 63 3.15347 0.24576 2.84002 2.14762 77 C = - > 1.38629 1.38629 1.38629 1.38629 0.68157 3.67730 0.75740 1.46634 0.26236 0.01702 4.08188 64 0.29576 4.32219 1.57777 3.31520 78 A + - , 1.38629 1.38629 1.38629 1.38629 0.12105 2.28477 4.40500 0.18651 1.77107 0.14045 2.03228 65 1.87798 1.38595 2.81988 0.62101 81 U + - , 1.38629 1.38629 1.38629 1.38629 0.00828 5.49116 5.49116 1.46634 0.26236 1.73222 0.19467 66 1.75253 4.04638 0.24000 3.79183 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02914 5.49116 3.70525 1.46634 0.26236 1.73222 0.19467 67 1.23453 2.28238 0.64056 2.52582 83 G = - < 1.38629 1.38629 1.38629 1.38629 0.01409 5.47048 4.62721 1.46634 0.26236 2.17804 0.12021 68 1.32598 2.22111 0.84519 1.62714 84 g = - < 1.38629 1.38629 1.38629 1.38629 0.20776 3.53159 1.84299 0.26761 1.44906 2.37651 0.09747 69 1.58598 1.10097 1.72046 1.25977 86 c = - < 1.38629 1.38629 1.38629 1.38629 0.34920 5.29883 1.23874 1.46634 0.26236 2.68128 0.07093 70 1.61627 1.00014 1.53769 1.52024 87 c = - < 1.38629 1.38629 1.38629 1.38629 0.20508 3.00103 1.99742 0.93468 0.49875 0.88736 0.53059 71 1.31362 1.46152 2.60787 0.85431 91 u + - _ 1.38629 1.38629 1.38629 1.38629 0.03339 3.61621 5.12398 0.68411 0.70227 0.33836 1.24806 72 2.19340 2.56012 2.03292 0.38535 94 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02589 5.41242 3.85875 1.46634 0.26236 0.37115 1.17099 73 1.09427 1.02662 2.01443 1.75098 95 c + - _ 1.38629 1.38629 1.38629 1.38629 0.01635 5.46390 4.42484 1.46634 0.26236 0.69157 0.69473 74 0.85053 2.29731 1.24092 1.69737 96 a + - _ 1.38629 1.38629 1.38629 1.38629 0.17438 3.51940 2.03709 0.47973 0.96483 1.21465 0.35213 75 0.48128 2.19897 2.59323 1.62805 99 A + - _ 1.38629 1.38629 1.38629 1.38629 0.15774 5.35056 1.95771 1.46634 0.26236 3.47838 0.03134 76 0.70203 2.10112 2.10285 1.34709 100 a + - _ 1.38629 1.38629 1.38629 1.38629 0.38238 2.76870 1.36642 0.79530 0.60047 3.91308 0.02018 77 1.50426 1.20084 2.71312 0.89027 105 u + - _ 1.38629 1.38629 1.38629 1.38629 0.83841 3.38693 0.62775 0.74367 0.64506 0.54059 0.87324 78 1.19695 1.49196 1.39197 1.49447 108 a = - > 1.38629 1.38629 1.38629 1.38629 0.03344 3.74159 4.69185 0.56221 0.84385 0.73646 0.65163 79 1.30312 1.73859 1.12270 1.48215 110 g = - > 1.38629 1.38629 1.38629 1.38629 0.12522 2.19267 5.10269 0.40825 1.09306 0.67020 0.71664 80 1.76624 0.83575 2.06446 1.31457 113 c = - > 1.38629 1.38629 1.38629 1.38629 0.00930 5.37555 5.37555 1.46634 0.26236 1.25102 0.33717 81 2.78824 0.61391 2.88015 1.07554 114 C = - > 1.38629 1.38629 1.38629 1.38629 0.04021 3.35380 5.41279 0.42718 1.05654 0.20779 1.67332 82 4.11696 0.28724 3.85136 1.55058 117 C = - > 1.38629 1.38629 1.38629 1.38629 0.02063 4.38280 4.83692 0.56534 0.83971 0.45292 1.00997 83 2.82697 0.42819 2.94384 1.44198 119 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00853 5.49826 5.42635 1.46634 0.26236 1.36736 0.29407 84 0.93805 2.34037 1.13484 1.65630 120 a = - ) 1.38629 1.38629 1.38629 1.38629 0.00822 5.49796 5.49796 1.46634 0.26236 1.24368 0.34013 85 1.30379 1.81598 1.45287 1.10285 121 u = - ) 1.38629 1.38629 1.38629 1.38629 0.01802 4.28556 5.49859 0.51572 0.90899 0.77512 0.61738 86 0.94093 2.13625 1.19699 1.66317 123 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01688 4.37038 5.49947 0.55545 0.85288 1.12316 0.39341 87 0.84502 2.31515 1.10347 1.96624 125 a = - ) 1.38629 1.38629 1.38629 1.38629 0.00821 5.49947 5.49947 1.46634 0.26236 1.05125 0.43002 88 0.63388 2.78678 1.09730 2.60258 126 A = - ) 1.38629 1.38629 1.38629 1.38629 0.00821 5.49977 5.49977 1.46634 0.26236 1.09861 0.40547 89 2.72323 0.37428 2.82904 1.67406 127 C = - ) 1.38629 1.38629 1.38629 1.38629 0.00868 5.49977 5.39236 1.46634 0.26236 1.09861 0.40547 90 0.12105 3.30035 2.87223 3.88408 128 A + - : 1.38629 1.38629 1.38629 1.38629 0.00411 5.49521 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-mammal-Cys.cm0000644000543100007160000017240012573631164021425 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME aligntRNAdb-Cys STATES 289 NODES 76 CLEN 90 W 98 ALPH RNA RF yes CONS yes MAP yes DATE Sun Mar 1 17:52:06 2015 COM [1] cmbuild --hand --enone Cys_model.cm aligntRNAdb-Cys.sto COM [2] cmcalibrate --seed 208 Cys_model.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 282 EFFN 282.000000 CKSUM 480526937 NULL 0.000 0.000 0.000 0.000 EFP7GF -10.4383 0.71871 ECMLC 0.66636 -7.37752 1.72648 1600000 517441 0.002319 ECMGC 0.31742 -46.33656 -30.46284 1600000 61702 0.006483 ECMLI 0.65657 -7.19207 1.97530 1600000 493391 0.002432 ECMGI 0.33276 -42.03670 -27.14132 1600000 56840 0.007037 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 117 -13.075 -14.320 -0.001 -10.774 IL 1 1 2 1 4 12 35 99 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 37 100 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 100 - U - + MR 3 2 3 5 5 19 41 98 117 -13.126 -0.001 -12.941 -13.153 -14.045 -9.618 -4.004 -10.495 1.977 D 4 2 3 5 5 10 31 96 116 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 12 35 98 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 99 A U = = MP 6 5 3 10 6 19 41 97 116 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.294 3.360 -12.435 -13.590 -7.893 -10.336 -9.854 -0.046 -10.524 2.247 -7.818 -11.599 -9.723 -8.892 ML 7 5 3 10 6 11 33 95 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 11 33 95 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 9 28 93 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 12 34 96 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 12 35 96 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 98 G C = = MP 12 11 6 16 6 19 39 95 114 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.860 -8.641 -13.642 -1.684 -13.569 -9.853 -7.936 -13.309 -9.999 3.939 -2.741 -2.416 -8.280 -10.301 -10.355 -12.512 ML 13 11 6 16 6 11 32 93 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 11 32 93 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 9 28 91 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 12 34 94 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 12 34 94 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 97 C G = = MP 18 17 6 22 6 18 38 93 112 -14.078 -14.017 -0.005 -12.794 -8.228 -13.468 -11.109 -11.391 -10.427 -7.628 -8.777 -10.571 3.333 -9.692 -10.530 -7.599 -10.650 -9.795 1.227 -10.943 1.831 -9.332 ML 19 17 6 22 6 11 32 91 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 11 32 91 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 9 28 89 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 12 33 92 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 12 34 92 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 96 C G = = MP 24 23 6 28 6 17 36 91 110 -14.073 -14.012 -0.001 -12.789 -13.069 -13.464 -11.105 -11.386 -10.422 -7.623 -8.772 -10.566 3.579 -9.688 -10.526 -7.595 -10.646 -9.791 -0.125 -10.939 1.637 -9.327 ML 25 23 6 28 6 11 31 89 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 11 32 90 109 -8.103 -6.832 -0.540 -6.810 -1.944 -5.024 -0.664 -1.712 1.377 -1.100 D 27 23 6 28 6 9 27 87 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 11 33 90 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 12 33 90 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 95 C G = = MP 30 29 6 34 6 16 34 89 108 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.390 -10.426 -7.626 -8.777 -10.571 3.413 -9.692 -10.530 -7.597 -10.650 -9.792 1.462 -2.466 1.258 -9.331 ML 31 29 6 34 6 11 31 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 11 30 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 9 27 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 11 32 88 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 11 32 88 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 94 U G = = MP 36 35 6 40 6 14 32 87 106 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.108 -11.389 -10.426 -7.626 -8.777 -10.571 1.729 -9.692 -10.530 -7.597 -10.650 -9.792 1.665 -2.466 3.192 -2.495 ML 37 35 6 40 6 11 30 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 10 29 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 8 27 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 11 30 87 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 11 30 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 93 G C = = MP 42 41 6 46 4 12 30 85 104 -13.280 -13.487 -0.001 -11.901 -11.734 -8.645 -13.207 0.492 -13.503 -9.905 -7.934 -12.972 -9.993 3.865 -10.220 -6.521 -8.259 -10.334 -10.324 -11.994 ML 43 41 6 46 4 10 28 85 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 9 27 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 8 26 84 104 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 11 29 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 11 29 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - + - ML 48 47 6 50 3 10 28 83 102 -14.190 -0.000 -12.844 1.007 -2.963 -4.438 0.860 D 49 47 6 50 3 8 26 81 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 10 28 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - + - ML 51 50 3 53 2 9 27 82 101 -4.850 -0.051 0.533 -9.172 1.350 -8.975 D 52 50 3 53 2 8 26 81 100 -8.445 -0.004 IL 53 53 3 53 2 9 27 82 101 -5.344 -0.036 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 8 26 81 100 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 0 6 42 60 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 0 6 42 60 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 0 24 42 -0.020 -6.264 -11.604 -12.244 [ MATP 15 ] 11 27 G U = = MP 58 57 1 62 6 2 2 24 42 -14.059 -13.999 -0.001 -12.775 -13.055 -13.450 -10.130 -8.735 -10.339 -5.087 -12.446 -12.899 -7.869 -10.379 -9.842 2.484 -10.488 3.373 -7.815 -11.483 -9.723 -8.938 ML 59 57 1 62 6 1 1 21 40 -8.904 -9.250 -3.964 -3.659 -9.100 -0.232 -2.524 -2.348 -3.294 1.819 MR 60 57 1 62 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 U A = = MP 64 63 6 68 6 2 2 22 40 -14.059 -13.999 -0.001 -12.775 -13.055 -13.450 -12.405 -12.070 -12.281 -11.574 -10.476 -12.142 -10.710 -11.964 -10.385 -11.578 -12.478 -11.956 3.996 -10.482 -5.721 -5.507 ML 65 63 6 68 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 18 37 -12.002 -10.700 -6.497 -7.179 -7.196 -0.037 IL 68 68 5 68 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 25 G C = = MP 70 69 6 74 6 2 2 20 38 -14.059 -13.999 -0.001 -12.775 -13.055 -13.450 -11.592 -8.631 -12.836 1.035 -13.418 -9.944 -7.913 -12.666 -9.968 3.800 -10.213 -6.479 -8.218 -10.352 -10.274 -11.573 ML 71 69 6 74 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 18 37 -12.002 -10.700 -6.497 -7.179 -7.196 -0.037 IL 74 74 5 74 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 24 A U = = MP 76 75 6 80 4 2 2 18 36 -13.261 -13.468 -0.086 -4.120 -0.443 -2.544 -4.143 3.227 -9.561 -10.543 -1.957 -9.284 -2.055 -1.570 -9.556 -1.465 1.012 -9.619 -7.517 1.291 ML 77 75 6 80 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 18 36 -7.437 -7.118 -5.134 -0.061 IL 80 80 5 80 4 1 1 23 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - + - ML 82 81 6 84 3 1 1 15 34 -14.086 -0.134 -3.501 1.367 -7.041 -2.904 0.355 D 83 81 6 84 3 0 0 13 32 -11.790 -7.303 -0.010 IL 84 84 3 84 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - U - + - ML 85 84 3 87 3 1 1 15 33 -13.953 -1.226 -0.805 -0.085 -2.731 -3.199 1.484 D 86 84 3 87 3 0 0 12 31 -12.900 -8.413 -0.004 IL 87 87 3 87 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - + - ML 88 87 3 90 3 1 1 14 33 -12.728 -3.701 -0.116 -0.031 -1.929 -0.898 1.152 D 89 87 3 90 3 0 0 12 30 -14.962 -10.475 -0.001 IL 90 90 3 90 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - c - + - ML 91 90 3 93 3 1 1 15 34 -9.037 -2.140 -0.375 0.061 0.442 -1.669 0.361 D 92 90 3 93 3 0 0 12 30 -15.570 -2.627 -0.255 IL 93 93 3 93 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - + - ML 94 93 3 96 3 1 1 14 32 -11.579 -0.002 -10.233 1.048 -6.253 0.930 -6.095 D 95 93 3 96 3 0 0 9 28 -15.354 -10.867 -0.001 IL 96 96 3 96 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - u - + - ML 97 96 3 99 3 1 1 12 31 -11.579 -1.525 -0.616 0.259 -0.654 -0.917 0.712 D 98 96 3 99 3 0 0 9 27 -15.354 -10.867 -0.001 IL 99 99 3 99 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - + - ML 100 99 3 102 3 1 1 8 14 -1.293 -0.762 -8.713 -5.015 -4.573 -5.839 1.967 D 101 99 3 102 3 0 0 5 12 -7.222 -0.018 -7.501 IL 102 102 3 102 3 1 1 7 14 -4.058 -0.104 -6.758 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.102 -2.606 -1.268 0.349 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 27 46 -14.190 -0.000 -12.844 IL 108 108 2 108 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - G - + - ML 109 108 2 111 5 1 1 27 46 -13.126 -0.001 -12.941 -13.153 -14.045 0.392 -7.461 1.233 -1.590 D 110 108 2 111 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 45 U A = = MP 112 111 3 116 6 2 2 26 45 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -2.717 -11.390 -2.952 -7.627 -8.777 -10.571 -0.340 -9.692 -10.530 -7.599 -10.650 -9.793 3.742 -10.943 0.610 -9.332 ML 113 111 3 116 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 44 U A = = MP 118 117 6 122 6 2 2 24 43 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -8.777 -10.571 1.608 -9.692 -10.530 -7.598 -10.650 -9.793 3.497 -10.943 0.551 -2.514 ML 119 117 6 122 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 6 122 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 43 G C = = MP 124 123 6 128 6 2 2 22 41 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.844 -8.641 -13.582 -1.456 -13.561 -9.860 -7.936 -13.263 -9.998 3.960 -10.210 -4.065 -8.277 -10.305 -10.352 -12.438 ML 125 123 6 128 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 42 A U = = MP 130 129 6 134 6 2 2 20 39 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -10.099 -8.759 -10.293 3.963 -12.434 -13.589 -7.892 -10.336 -9.854 -1.916 -10.524 -3.092 -7.817 -11.599 -9.723 -8.892 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 41 A U = = MP 136 135 6 140 4 2 2 18 37 -13.280 -13.487 -0.001 -11.901 -11.029 -10.904 -5.984 3.993 -11.493 -11.538 -10.147 -5.806 -11.273 -7.446 -11.322 -6.290 -10.297 -11.545 -10.667 -5.988 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - + - ML 142 141 6 144 3 1 1 16 34 -14.190 -0.000 -12.844 -9.198 -2.587 -10.023 1.938 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - + - ML 145 144 3 147 3 1 1 14 33 -14.190 -0.000 -12.844 -11.317 -10.026 -12.774 1.999 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - G - * - ML 148 147 3 150 3 1 1 13 32 -14.190 -0.000 -12.844 -8.745 -3.999 1.976 -9.468 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - C - * - ML 151 150 3 153 3 1 1 12 30 -14.190 -0.000 -12.844 -8.400 1.974 -3.966 -7.911 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - A - * - ML 154 153 3 156 3 1 1 10 29 -14.190 -0.000 -12.844 1.999 -10.184 -9.419 -9.524 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - + - ML 157 156 3 159 3 1 1 9 27 -14.190 -0.000 -12.844 1.988 -5.069 -9.321 -9.353 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.843 -9.160 -1.291 -9.000 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 6 50 69 -14.190 -0.000 -12.844 IL 165 165 2 165 3 1 7 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - + - ML 166 165 2 168 3 1 6 50 69 -14.190 -0.000 -12.844 1.869 -4.186 -1.798 -8.035 D 167 165 2 168 3 0 4 49 68 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 6 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - + - ML 169 168 3 171 2 1 5 49 68 -14.843 -0.000 -1.873 -10.390 1.897 -9.417 D 170 168 3 171 2 0 4 48 67 -8.445 -0.004 IL 171 171 3 171 2 1 5 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 4 48 67 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 28 47 -5.893 -12.197 -11.604 -0.025 [ MATP 48 ] 48 65 g c = = MP 174 173 1 178 6 2 2 33 51 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 175 173 1 178 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 22 41 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 178 178 5 178 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 64 g c = = MP 180 179 6 184 6 2 2 31 49 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 181 179 6 184 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 20 39 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 184 184 5 184 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 63 g c = = MP 186 185 6 190 6 2 2 28 47 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 187 185 6 190 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 190 190 5 190 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 62 g c = = MP 192 191 6 196 6 2 2 26 45 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 193 191 6 196 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 16 35 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 196 196 5 196 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 61 g c = = MP 198 197 6 202 6 2 2 24 43 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 14 34 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 53 60 g c = = MP 204 203 6 208 6 2 2 22 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 13 32 -18.067 -16.765 -12.562 -13.244 -13.262 -0.001 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 54 59 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 13 32 -13.489 -13.170 -11.186 -0.001 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - + - ML 216 215 6 218 3 1 1 17 36 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 217 215 6 218 3 0 0 9 28 -15.602 -11.115 -0.001 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - a - + - ML 219 218 3 221 3 1 1 15 34 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 220 218 3 221 3 0 0 8 27 -15.602 -11.115 -0.001 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - + - ML 222 221 3 224 3 1 1 14 32 -6.939 -0.042 -5.593 0.368 -0.385 -0.191 0.094 D 223 221 3 224 3 0 0 7 25 -15.602 -11.115 -0.001 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - a - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.368 -0.385 -0.191 0.094 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 4 32 51 -14.190 -0.000 -12.844 IL 230 230 2 230 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - + - ML 231 230 2 233 3 1 5 32 51 -5.644 -0.029 -12.844 1.533 -8.618 0.073 -4.292 D 232 230 2 233 3 0 0 31 49 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 2 33 51 -3.601 -0.144 -6.301 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - A - + - ML 234 233 3 236 5 1 5 31 50 -13.126 -0.001 -12.941 -13.153 -14.045 1.821 -4.505 -5.063 -1.344 D 235 233 3 236 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 32 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 69 92 G C = = MP 237 236 3 241 6 2 5 30 49 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -12.020 -8.636 -14.385 -6.116 -13.639 -9.796 -7.935 -13.821 -10.005 3.996 -10.197 -6.570 -8.302 -10.264 -10.387 -13.499 ML 238 236 3 241 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 70 91 C G = = MP 243 242 6 247 6 2 5 28 47 -14.078 -14.017 -0.001 -12.794 -13.073 -13.468 -11.109 -11.390 -10.426 -7.626 -8.777 -10.571 3.598 -9.692 -10.530 -7.598 -10.650 -9.793 1.006 -10.943 0.797 -2.939 ML 244 242 6 247 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 71 90 A U = = MP 249 248 6 253 6 2 4 26 45 -14.078 -14.017 -0.017 -6.458 -13.073 -13.468 -10.099 -0.817 -10.294 3.905 -12.435 -13.590 -7.893 -10.336 -9.854 -1.866 -10.524 -2.646 -7.818 -11.599 -9.724 -8.892 ML 250 248 6 253 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 251 248 6 253 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 252 248 6 253 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 72 89 G C = = MP 255 254 6 259 6 2 2 24 43 -14.062 -14.001 -0.652 -1.873 -5.316 -3.933 -11.733 -8.628 -13.239 -3.202 -13.492 -9.882 -7.916 -12.995 -9.977 3.930 -10.202 -1.240 -8.244 -10.313 -2.274 -12.034 ML 256 254 6 259 6 1 1 24 43 -8.756 -9.102 -3.817 -0.133 -8.952 -6.482 1.853 -3.240 -2.790 -2.872 MR 257 254 6 259 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 6 259 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 73 88 c c = = MP 261 260 6 265 4 2 2 19 37 -12.595 -12.802 -0.140 -3.442 -5.693 -3.443 -1.601 1.572 -1.585 2.247 1.497 1.015 -5.897 -1.144 -6.459 -4.255 -1.432 -6.010 -0.485 0.039 ML 262 260 6 265 4 1 1 23 42 -3.174 -10.404 -0.173 -9.133 -7.203 1.829 -7.762 -1.201 MR 263 260 6 265 4 1 1 24 43 -8.309 -0.258 -3.199 -4.266 -2.571 -3.627 1.789 -1.766 D 264 260 6 265 4 0 0 18 37 -9.616 -9.297 -1.083 -0.929 IL 265 265 5 265 4 1 1 25 43 -5.298 -0.098 -4.730 -8.467 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 24 42 -1.443 -1.394 -1.991 0.000 0.000 0.000 0.000 [ MATL 68 ] 75 - U - + - ML 267 266 6 269 3 1 1 17 34 -4.057 -0.090 -12.669 -2.567 -2.832 -2.114 1.791 D 268 266 6 269 3 0 0 16 33 -12.496 -0.012 -6.887 IL 269 269 3 269 3 1 1 17 34 -4.798 -0.061 -7.498 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - U - + - ML 270 269 3 272 3 1 1 16 33 -14.190 -0.010 -7.221 -1.490 -3.192 -1.804 1.700 D 271 269 3 272 3 0 0 18 36 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - C - + - ML 273 272 3 275 3 1 1 14 31 -14.181 -0.008 -7.562 -0.127 1.373 -3.655 -1.269 D 274 272 3 275 3 0 0 15 33 -8.645 -0.192 -3.037 IL 275 275 3 275 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - A - + - ML 276 275 3 278 3 1 1 13 30 -5.440 -0.037 -8.724 1.533 -3.704 -0.537 -1.560 D 277 275 3 278 3 0 0 13 30 -8.358 -0.237 -2.750 IL 278 278 3 278 3 1 1 14 30 -3.756 -0.129 -6.456 0.000 0.000 0.000 0.000 [ MATL 72 ] 81 - A - + - ML 279 278 3 281 3 1 1 12 28 -14.187 -0.058 -4.670 1.788 -2.342 -2.121 -3.074 D 280 278 3 281 3 0 0 14 32 -7.515 -3.028 -0.198 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 82 - u - + - ML 282 281 3 284 3 1 1 11 23 -3.160 -0.754 -1.760 -0.043 -0.339 -0.798 0.735 D 283 281 3 284 3 0 0 7 19 -11.060 -6.573 -0.016 IL 284 284 3 284 3 1 1 12 23 -2.279 -0.337 -8.742 0.000 0.000 0.000 0.000 [ MATL 74 ] 85 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.240 -0.141 -2.076 1.403 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME aligntRNAdb-Cys LENG 90 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Sun Mar 1 17:52:06 2015 COM [1] cmbuild --hand --enone Cys_model.cm aligntRNAdb-Cys.sto NSEQ 282 EFFN 4.952728 CKSUM 480526937 STATS LOCAL MSV -8.7914 0.71871 STATS LOCAL VITERBI -9.8035 0.71871 STATS LOCAL FORWARD -3.5459 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33535 1.55487 1.35045 1.32202 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 0.00000 * 1 0.61137 3.52700 0.94203 3.26590 1 A = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 2 2.70614 3.67100 0.12873 3.55644 2 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 3 3.02196 0.62436 2.80397 1.03529 3 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02822 4.36417 4.19282 1.46634 0.26236 1.09861 0.40547 4 3.22510 0.46523 3.02204 1.26036 4 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02584 4.36179 4.36179 1.46634 0.26236 0.98770 0.46590 5 2.54249 0.70485 2.31385 1.11393 5 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 6 2.41585 1.27558 2.22299 0.64788 6 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 7 2.31147 3.68767 0.16537 3.56578 7 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 8 0.91447 2.10834 2.30819 0.97183 8 a + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 9 1.07988 3.06873 0.60345 2.70360 9 G + - , 1.38629 1.38629 1.38629 1.38629 0.05182 3.27602 4.36417 0.57581 0.82610 1.09861 0.40547 10 2.33792 3.50739 0.18018 3.26041 11 G = - < 1.38629 1.38629 1.38629 1.38629 0.03545 4.36417 3.81184 1.46634 0.26236 1.09861 0.40547 11 4.12104 2.86843 4.00664 0.09564 12 U = - < 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 12 2.07094 3.51676 0.21034 3.38355 13 G = - < 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 13 1.15560 1.66775 1.58284 1.23420 14 a = - < 1.38629 1.38629 1.38629 1.38629 0.06935 4.35474 2.91583 1.46634 0.26236 1.31836 0.31139 14 0.69029 2.28711 2.21415 1.24562 15 A + - _ 1.38629 1.38629 1.38629 1.38629 0.09369 4.31255 2.57652 1.46634 0.26236 1.93923 0.15527 15 1.43969 2.07783 2.32580 0.61602 16 U + - _ 1.38629 1.38629 1.38629 1.38629 0.55157 4.24787 0.89243 1.46634 0.26236 2.45343 0.08992 16 1.31148 1.80052 1.80832 0.91270 17 u + - _ 1.38629 1.38629 1.38629 1.38629 0.68947 3.74474 0.74545 1.46634 0.26236 3.67087 0.02578 17 1.16784 1.52617 1.69935 1.24204 18 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14957 3.14531 2.34474 1.46634 0.26236 1.76902 0.18693 18 0.96533 2.06985 1.19623 1.65754 19 a + - _ 1.38629 1.38629 1.38629 1.38629 0.06680 3.43237 3.43237 1.46634 0.26236 3.92463 0.01995 19 1.22743 1.62927 1.75862 1.08293 20 u + - _ 1.38629 1.38629 1.38629 1.38629 0.30229 3.43237 1.47591 1.46634 0.26236 3.61771 0.02721 20 1.44625 1.69469 1.86856 0.85204 21 u + - _ 1.38629 1.38629 1.38629 1.38629 0.14118 2.38551 3.22823 0.71306 0.67363 0.04059 3.22450 21 0.86129 2.06867 1.90811 1.19511 23 a + - _ 1.38629 1.38629 1.38629 1.38629 0.03556 4.36109 3.80877 1.46634 0.26236 0.95980 0.48284 22 1.48915 1.76401 1.45840 0.99298 24 u = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 23 3.59635 0.23974 3.34343 1.89427 25 C = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 24 0.10823 4.21335 2.70193 3.87734 26 A = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 1.31836 0.31139 25 3.50022 0.92943 3.31912 0.61832 27 U = - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35474 4.35474 1.46634 0.26236 0.76603 0.62521 26 1.18605 2.58863 0.75136 1.91239 28 g + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 27 2.39412 1.62415 2.26042 0.49863 29 U = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 28 2.70242 1.28599 2.47035 0.55857 30 U = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 29 2.88356 4.02612 0.09797 3.93497 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 30 0.13850 4.07497 2.40269 3.82270 32 A = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 31 0.11209 3.97144 2.72385 3.83661 33 A = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 32 3.02798 2.56632 3.54621 0.16731 34 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 33 3.51125 3.33463 4.05234 0.08650 35 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 34 3.18939 3.73284 0.09551 3.65094 36 G * - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 35 3.43460 0.11687 3.64653 2.95694 37 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 36 0.05803 4.17155 3.81933 3.96280 38 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 37 0.07783 3.77264 3.61390 3.69118 39 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 38 0.21593 3.30933 2.19628 3.06937 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 39 4.04615 3.11566 3.77569 0.08857 41 U = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 40 4.01576 2.78360 3.86312 0.10630 42 U = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 41 4.10042 0.11844 3.87739 2.59793 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 42 0.72401 2.64423 1.03857 2.40602 44 a = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 43 0.61834 2.43443 1.31609 2.25060 45 A = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 44 0.21758 3.04030 2.36438 2.92425 46 A + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 45 2.47072 3.84689 0.14728 3.47132 47 G + - , 1.38629 1.38629 1.38629 1.38629 1.36844 4.36417 0.31092 1.46634 0.26236 1.09861 0.40547 46 1.80805 1.30439 1.07542 1.49819 48 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 47 1.80312 1.30590 1.07725 1.49721 49 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 48 1.80082 1.30660 1.07810 1.49674 50 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 49 1.79981 1.30691 1.07848 1.49654 51 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 50 1.79943 1.30703 1.07862 1.49646 52 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 51 1.79935 1.30705 1.07865 1.49645 53 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 52 1.79942 1.30703 1.07863 1.49646 54 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 53 1.13112 1.65303 1.51838 1.32128 55 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 54 1.13112 1.65303 1.51838 1.32128 56 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 55 1.13112 1.65303 1.51838 1.32128 57 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 56 1.13112 1.65303 1.51838 1.32128 58 a + - _ 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 57 1.73066 1.22003 1.16196 1.53833 59 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 58 1.73055 1.22008 1.16200 1.53830 60 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 59 1.73052 1.22009 1.16201 1.53829 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 60 1.73063 1.22004 1.16197 1.53832 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 61 1.73101 1.21989 1.16183 1.53843 63 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 62 1.73185 1.21953 1.16152 1.53868 64 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.08739 0.01693 63 1.73350 1.21882 1.16092 1.53917 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 0.03414 3.39424 64 0.46670 2.90305 1.44623 2.49352 66 A + - , 1.38629 1.38629 1.38629 1.38629 0.04072 3.60521 4.36417 0.76642 0.62488 1.09861 0.40547 65 0.28122 2.74287 2.78734 2.12720 68 A + - , 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 66 3.22541 4.15860 0.07436 4.11695 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 67 2.85420 0.53286 2.61565 1.26458 70 C = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 68 0.16650 3.90252 2.23680 3.63497 71 A = - < 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 69 2.47095 3.25966 0.18824 3.02248 72 G = - < 1.38629 1.38629 1.38629 1.38629 0.09590 4.36417 2.54188 1.46634 0.26236 1.09861 0.40547 70 1.55299 1.09755 1.69414 1.30586 73 c = - < 1.38629 1.38629 1.38629 1.38629 0.10109 3.26145 2.85048 0.60358 0.79154 1.02720 0.44318 71 2.15691 2.27767 2.48987 0.35828 75 U + - _ 1.38629 1.38629 1.38629 1.38629 0.07230 2.88462 4.27785 0.43909 1.03458 0.23642 1.55804 72 1.92225 2.28764 2.33861 0.42197 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.03068 4.36417 4.04639 1.46634 0.26236 1.09861 0.40547 73 1.44555 0.75531 2.50025 1.54904 78 c + - _ 1.38629 1.38629 1.38629 1.38629 0.02974 4.35940 4.10339 1.46634 0.26236 0.89834 0.52297 74 0.55658 2.38644 1.74361 1.83264 79 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04478 3.52656 4.24157 0.71851 0.66841 0.93542 0.49828 75 0.33549 2.43471 2.34437 2.28791 81 A + - _ 1.38629 1.38629 1.38629 1.38629 0.05535 4.36256 3.19169 1.46634 0.26236 1.13983 0.38548 76 1.29991 1.59858 1.80164 1.02101 82 u + - _ 1.38629 1.38629 1.38629 1.38629 0.38230 2.37311 1.49379 0.42175 1.06682 1.67729 0.20688 77 1.78216 1.53161 2.20604 0.68240 85 U + - _ 1.38629 1.38629 1.38629 1.38629 0.47063 2.68077 1.18130 0.43037 1.05059 0.13975 2.03695 78 1.53893 1.54240 1.23176 1.27388 88 g = - > 1.38629 1.38629 1.38629 1.38629 0.03371 4.09992 4.09992 1.46634 0.26236 0.13331 2.08098 79 3.38229 0.22853 2.98610 2.12159 89 C = - > 1.38629 1.38629 1.38629 1.38629 0.02600 4.35584 4.35584 1.46634 0.26236 0.79329 0.60213 80 3.83236 2.37757 3.68849 0.15018 90 U = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 81 1.68777 2.78765 0.39183 2.55509 91 G = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 82 4.25669 0.09133 4.01507 2.89907 92 C = - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 83 3.75822 0.19076 3.51795 2.11457 93 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 84 1.47112 2.34360 0.58136 2.16097 94 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 85 1.52474 2.42860 0.51868 2.31406 95 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 86 2.03806 3.18388 0.25141 2.98394 96 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 87 1.65315 2.97385 0.36273 2.78595 97 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 88 3.77103 0.16051 3.39330 2.38964 98 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 89 3.48660 1.91419 3.32063 0.24105 99 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02578 4.36417 4.36417 1.46634 0.26236 1.09861 0.40547 90 3.21720 2.90574 3.74069 0.12614 100 U + - : 1.38629 1.38629 1.38629 1.38629 0.01297 4.35136 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-euk.cm0000644000543100007160000017232512706352166017251 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME euk-031616 STATES 289 NODES 76 CLEN 90 W 628 ALPH RNA RF yes CONS yes MAP yes DATE Wed Mar 16 23:05:30 2016 COM [1] cmbuild -F --enone --hand euk-031616.cm euk-031616.sto COM [2] cmcalibrate --hfile euk.hfile --sfile euk.sfile --qqfile euk.qqfile --ffile euk.ffile --seed 208 euk-031616.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28278 EFFN 28278.000000 CKSUM 980995084 NULL 0.000 0.000 0.000 0.000 EFP7GF -13.4637 0.71851 ECMLC 0.69514 -7.13386 1.23206 1600000 402538 0.002981 ECMGC 0.30255 -33.66251 -21.04465 1600000 18197 0.021982 ECMLI 0.62997 -7.10487 1.89944 1600000 348898 0.003439 ECMGI 0.31469 -30.47583 -18.38805 1600000 17951 0.022283 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 628 1321 -19.713 -20.959 -0.032 -5.492 IL 1 1 2 1 4 29 50 630 1324 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 31 51 631 1324 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 325 - A - + MR 3 2 3 5 5 32 52 629 1323 -6.084 -0.021 -19.544 -15.320 -20.648 1.195 -2.938 -0.035 -0.726 D 4 2 3 5 5 27 46 628 1321 -14.852 -0.015 -9.709 -11.540 -6.860 IR 5 5 3 5 5 31 50 631 1325 -0.611 -1.685 -4.866 -13.664 -14.770 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 321 G C = = MP 6 5 3 10 6 31 51 628 1322 -7.650 -6.364 -0.031 -15.249 -7.969 -11.638 -5.816 -2.510 -4.789 -1.180 -6.610 -6.547 -0.383 -7.477 -5.490 3.612 -6.569 -0.751 0.721 -5.696 -6.671 -7.405 ML 7 5 3 10 6 28 46 629 1323 -12.166 -0.046 -7.226 -5.408 -12.362 -9.891 -4.186 1.959 -5.038 -5.204 MR 8 5 3 10 6 27 45 626 1319 -8.002 -6.731 -0.837 -6.710 -1.380 -4.923 -0.185 0.528 -0.503 -0.040 D 9 5 3 10 6 25 41 625 1318 -12.459 -11.158 -6.955 -7.637 -7.654 -0.027 IL 10 10 5 10 6 29 46 624 1317 -9.814 -10.076 -7.994 -11.732 -0.009 -12.168 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 27 45 628 1322 -0.804 -1.756 -4.256 -5.075 -4.347 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 317 c g = = MP 12 11 6 16 6 32 51 626 1320 -8.007 -6.865 -0.023 -15.007 -8.223 -15.420 -7.662 -6.981 -6.919 -0.315 -1.442 -6.522 2.986 -6.877 -5.530 1.828 -4.604 -0.145 1.114 -6.630 -2.584 -7.539 ML 13 11 6 16 6 29 48 628 1321 -12.395 -0.060 -6.058 -5.337 -12.591 -10.120 1.966 -4.301 -6.143 -5.145 MR 14 11 6 16 6 28 45 623 1316 -15.446 -14.175 -7.587 -14.153 -0.008 -12.366 1.023 0.325 -0.706 -3.296 D 15 11 6 16 6 25 41 625 1318 -15.803 -0.412 -10.299 -10.981 -10.998 -2.018 IL 16 16 5 16 6 30 50 625 1319 -9.441 -9.704 -0.005 -11.359 -12.136 -11.796 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 31 51 627 1320 -0.714 -1.358 -15.020 -13.187 -14.293 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 313 C G = = MP 18 17 6 22 6 32 50 624 1318 -6.726 -6.216 -0.037 -13.777 -8.972 -14.949 -7.793 -6.622 -5.322 0.480 -4.152 -6.104 3.233 -6.299 -4.635 0.186 -4.402 -0.905 1.501 -8.226 -1.332 -3.499 ML 19 17 6 22 6 27 44 624 1317 -8.021 -8.368 -0.613 -1.655 -8.217 -5.747 0.308 0.056 -0.271 -0.162 MR 20 17 6 22 6 27 44 622 1315 -15.855 -14.584 -2.005 -14.562 -0.443 -6.048 1.475 -8.052 -1.074 -0.431 D 21 17 6 22 6 24 40 618 1311 -13.855 -12.553 -4.904 -9.032 -9.049 -0.055 IL 22 22 5 22 6 31 49 624 1317 -1.413 -11.657 -0.681 -13.312 -14.088 -13.749 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 30 49 625 1318 -10.335 -2.782 -0.228 -12.014 -13.119 0.000 0.000 0.000 0.000 [ MATP 5 ] 8 311 c g = = MP 24 23 6 28 6 31 48 622 1315 -6.113 -20.594 -0.024 -9.294 -10.487 -15.909 -6.761 -1.859 -7.720 0.549 -2.467 -6.315 2.310 -4.927 -6.122 2.011 -5.347 -0.460 1.280 -7.376 0.860 -5.774 ML 25 23 6 28 6 30 48 624 1317 -15.120 -0.014 -7.047 -9.275 -15.316 -12.845 1.992 -10.078 -6.420 -6.528 MR 26 23 6 28 6 27 44 621 1314 -4.556 -14.408 -6.702 -9.758 -0.082 -8.994 0.792 0.793 -0.958 -5.563 D 27 23 6 28 6 24 40 618 1311 -14.332 -13.030 -3.587 -5.196 -1.985 -0.651 IL 28 28 5 28 6 31 47 624 1317 -0.520 -13.349 -1.726 -15.004 -15.781 -15.441 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 30 47 623 1316 -0.587 -1.582 -15.205 -13.372 -14.478 0.000 0.000 0.000 0.000 [ MATP 6 ] 13 307 c g = = MP 30 29 6 34 6 29 46 620 1313 -6.727 -8.014 -0.020 -11.571 -14.997 -16.842 -7.280 -2.538 -6.974 1.020 -5.232 -7.103 2.126 -6.697 -4.843 1.814 -4.584 0.578 1.858 -6.346 -0.973 -2.781 ML 31 29 6 34 6 27 44 619 1313 -12.292 -12.638 -2.726 -0.251 -12.488 -6.971 -2.247 -2.205 1.673 -1.385 MR 32 29 6 34 6 27 43 620 1313 -15.708 -14.437 -3.959 -14.415 -0.096 -12.629 -3.854 -5.954 1.484 0.161 D 33 29 6 34 6 23 40 617 1310 -13.796 -12.495 -2.992 -8.974 -8.991 -0.201 IL 34 34 5 34 6 29 45 620 1313 -1.645 -11.532 -0.557 -13.188 -13.964 -13.624 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 28 45 619 1312 -8.550 -0.006 -12.061 -10.229 -11.335 0.000 0.000 0.000 0.000 [ MATP 7 ] 16 305 g c = = MP 36 35 6 40 6 27 44 618 1311 -9.030 -8.026 -0.014 -8.073 -12.144 -16.007 -7.076 -6.561 -5.296 0.862 -5.858 -7.546 1.875 -5.975 -7.723 2.190 -3.634 1.239 1.163 -6.996 -0.403 -1.249 ML 37 35 6 40 6 27 43 618 1312 -0.801 -12.705 -2.295 -2.177 -12.555 -10.085 1.165 -2.821 -0.782 0.050 MR 38 35 6 40 6 26 42 619 1312 -1.170 -14.346 -3.459 -10.569 -1.109 -12.538 0.837 -5.645 0.199 0.065 D 39 35 6 40 6 23 40 616 1310 -13.666 -12.365 -3.378 -2.686 -5.797 -0.454 IL 40 40 5 40 6 26 43 617 1310 -10.466 -10.728 -0.002 -12.384 -13.160 -12.820 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 26 42 618 1311 -8.540 -0.278 -12.051 -2.538 -11.324 0.000 0.000 0.000 0.000 [ MATP 8 ] 18 303 g c = = MP 42 41 6 46 4 25 42 616 1309 -5.733 -5.596 -0.058 -13.878 -6.804 -3.792 -4.998 2.293 -4.138 -7.431 0.678 -5.877 -5.399 2.624 -2.379 -0.246 1.033 -7.139 -5.495 -7.304 ML 43 41 6 46 4 26 42 619 1312 -1.731 -0.651 -4.081 -8.406 1.766 -4.870 -1.575 -2.123 MR 44 41 6 46 4 24 41 619 1312 -0.280 -11.792 -4.552 -2.902 -3.133 0.700 1.138 -4.040 D 45 41 6 46 4 23 39 616 1309 -8.713 -0.830 -2.101 -2.307 IL 46 46 5 46 4 25 42 619 1312 -0.435 -4.243 -2.268 -16.567 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 25 41 618 1311 -0.452 -1.937 -6.982 0.000 0.000 0.000 0.000 [ MATL 9 ] 25 - U - + - ML 48 47 6 50 3 23 40 614 1307 -5.140 -0.042 -13.846 -7.159 -6.634 -7.433 1.992 D 49 47 6 50 3 22 39 613 1306 -13.108 -0.170 -3.168 IL 50 50 3 50 3 24 40 614 1307 -2.930 -0.203 -13.284 0.000 0.000 0.000 0.000 [ MATL 10 ] 28 - G - + - ML 51 50 3 53 2 22 39 613 1306 -5.228 -0.039 0.831 -5.507 1.128 -6.194 D 52 50 3 53 2 21 38 612 1305 -9.485 -0.002 IL 53 53 3 53 2 23 39 613 1306 -3.188 -0.168 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 21 38 612 1305 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 7 18 587 1280 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 7 18 587 1280 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 1 7 70 147 -0.000 -18.820 -14.965 -18.867 [ MATP 15 ] 31 76 G C = = MP 58 57 1 62 6 3 10 70 147 -7.645 -8.232 -0.012 -19.405 -19.685 -20.080 -6.438 -5.978 -14.471 -1.407 -6.259 -5.687 -1.078 -6.065 -5.684 3.685 -6.095 0.955 -2.323 -5.143 -8.032 -7.798 ML 59 57 1 62 6 1 5 71 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 5 74 152 -7.981 -6.710 -2.619 -6.689 -0.357 -4.902 1.377 -1.384 -1.111 -0.847 D 61 57 1 62 6 0 3 73 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 6 69 146 -9.820 -10.083 -0.004 -11.738 -12.514 -12.175 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 5 69 146 -8.356 -0.007 -11.867 -10.034 -11.140 0.000 0.000 0.000 0.000 [ MATP 16 ] 33 74 C G = = MP 64 63 6 68 6 3 9 68 145 -20.689 -8.075 -0.005 -16.276 -15.003 -20.080 -8.452 -10.607 -6.509 -4.417 -3.730 -4.992 3.548 -5.639 -7.559 -5.131 -7.626 -12.256 1.921 -6.977 -1.852 -6.819 ML 65 63 6 68 6 1 5 71 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 5 74 152 -7.981 -6.710 -2.619 -6.689 -0.357 -4.902 -0.524 -1.539 1.285 -0.932 D 67 63 6 68 6 0 3 74 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 5 69 146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 5 67 144 -8.511 -0.006 -12.022 -10.190 -11.295 0.000 0.000 0.000 0.000 [ MATP 17 ] 34 72 u a = = MP 70 69 6 74 6 3 7 66 143 -8.105 -7.928 -0.011 -19.405 -15.537 -20.080 -7.179 -3.380 -4.099 -1.719 -4.141 -9.003 2.297 -5.752 -8.106 1.681 -7.132 -4.695 2.773 -7.291 -1.193 -7.611 ML 71 69 6 74 6 1 5 70 148 -6.791 -7.137 -0.762 -1.546 -6.987 -4.516 -0.161 -0.483 -0.779 0.854 MR 72 69 6 74 6 1 5 74 151 -8.586 -7.315 -1.154 -7.293 -0.962 -5.507 -1.318 -2.495 1.655 -1.880 D 73 69 6 74 6 0 3 74 152 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 5 65 142 -9.363 -9.626 -0.005 -11.282 -12.058 -11.718 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 5 65 142 -8.656 -0.006 -12.167 -10.335 -11.440 0.000 0.000 0.000 0.000 [ MATP 18 ] 36 70 C G = = MP 76 75 6 80 4 2 5 64 141 -7.642 -20.126 -0.007 -18.541 -2.134 -5.537 -7.360 -6.182 -1.021 -4.221 3.095 -4.695 1.497 -5.655 -7.262 -2.921 -0.751 -7.282 0.567 0.619 ML 77 75 6 80 4 1 4 72 149 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 4 75 153 -6.371 -5.400 -1.403 -0.771 1.200 -1.323 -0.474 -0.777 D 79 75 6 80 4 0 3 75 152 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 3 77 155 -9.153 -9.836 -8.584 -0.008 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 4 69 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 38 - A - + - ML 82 81 6 84 3 1 3 61 138 -5.633 -0.029 -14.966 1.984 -7.747 -4.897 -7.461 D 83 81 6 84 3 0 2 76 154 -0.012 -10.130 -7.061 IL 84 84 3 84 3 1 4 76 154 -0.343 -2.241 -15.145 0.000 0.000 0.000 0.000 [ MATL 20 ] 45 - G - + - ML 85 84 3 87 3 1 2 50 114 -20.829 -0.000 -12.260 -0.776 -6.866 1.765 -6.778 D 86 84 3 87 3 0 1 48 112 -8.491 -0.559 -1.651 IL 87 87 3 87 3 1 2 50 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 46 - U - + - ML 88 87 3 90 3 1 1 49 113 -6.137 -1.448 -0.691 -3.683 -0.778 -2.954 1.683 D 89 87 3 90 3 0 0 38 102 -10.163 -5.676 -0.030 IL 90 90 3 90 3 1 2 63 127 -0.416 -1.998 -14.085 0.000 0.000 0.000 0.000 [ MATL 22 ] 51 - U - + - ML 91 90 3 93 3 1 1 23 44 -3.364 -0.148 -11.775 -3.655 0.404 -3.343 1.321 D 92 90 3 93 3 0 0 18 35 -21.556 -0.000 -14.249 IL 93 93 3 93 3 1 1 24 45 -1.282 -0.836 -5.132 0.000 0.000 0.000 0.000 [ MATL 23 ] 56 - G - + - ML 94 93 3 96 3 1 2 18 35 -20.826 -0.000 -19.480 -5.547 -7.764 1.989 -7.668 D 95 93 3 96 3 0 0 17 33 -13.232 -2.359 -0.313 IL 96 96 3 96 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 57 - G - + - ML 97 96 3 99 3 1 1 17 34 -20.826 -0.000 -12.945 -5.266 -7.486 1.985 -6.562 D 98 96 3 99 3 0 0 16 33 -12.923 -0.030 -5.616 IL 99 99 3 99 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 58 - U - + - ML 100 99 3 102 3 1 1 16 33 -0.779 -1.261 -12.761 -2.071 -2.709 -2.282 1.767 D 101 99 3 102 3 0 0 10 27 -9.654 -0.318 -2.347 IL 102 102 3 102 3 1 1 16 33 -1.606 -0.576 -10.496 0.000 0.000 0.000 0.000 [ MATL 26 ] 69 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.912 -4.941 -6.481 -2.382 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 2 570 1264 -6.094 -0.021 -13.105 IL 108 108 2 108 3 1 3 574 1267 -0.524 -1.714 -13.846 0.000 0.000 0.000 0.000 [ MATL 29 ] 81 - G - + - ML 109 108 2 111 5 1 3 570 1264 -7.857 -0.036 -5.642 -14.575 -20.680 -0.027 -4.264 1.204 -0.593 D 110 108 2 111 5 0 0 569 1262 -7.379 -0.120 -6.640 -5.015 -4.928 IL 111 111 3 111 5 1 1 570 1264 -8.725 -0.005 -10.404 -12.236 -11.510 0.000 0.000 0.000 0.000 [ MATP 30 ] 83 191 u a = = MP 112 111 3 116 6 2 3 569 1263 -8.387 -8.431 -0.018 -7.317 -14.620 -20.051 -8.085 -6.348 -1.662 0.100 -3.200 -8.824 2.400 -7.040 -6.296 -2.486 -7.518 0.378 2.646 -7.099 0.498 -5.167 ML 113 111 3 116 6 1 1 570 1263 -0.979 -4.367 -2.808 -1.731 -16.119 -13.649 1.036 0.948 -6.021 -7.553 MR 114 111 3 116 6 1 1 567 1260 -8.258 -6.987 -2.895 -6.965 -0.288 -5.178 0.046 -1.346 0.981 -0.737 D 115 111 3 116 6 0 0 560 1253 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 571 1264 -0.516 -13.200 -1.734 -14.856 -15.632 -15.292 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 568 1261 -8.549 -0.425 -12.061 -1.988 -11.334 0.000 0.000 0.000 0.000 [ MATP 31 ] 88 189 u a = = MP 118 117 6 122 6 2 3 567 1260 -7.598 -8.398 -0.013 -9.938 -15.652 -20.061 -6.183 -5.663 -7.993 0.524 -4.650 -6.811 2.232 -1.780 -6.990 1.412 -7.699 -3.365 2.606 -2.574 -1.223 -5.041 ML 119 117 6 122 6 1 1 565 1259 -1.548 -15.553 -7.451 -1.085 -10.310 -2.475 -4.909 0.868 -0.249 0.378 MR 120 117 6 122 6 1 1 566 1259 -12.240 -10.969 -0.034 -10.948 -5.635 -9.161 -3.134 1.925 -4.349 -4.654 D 121 117 6 122 6 0 0 558 1251 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 567 1260 -1.770 -3.259 -0.732 -13.125 -13.901 -13.561 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 566 1259 -8.719 -0.005 -12.230 -10.398 -11.504 0.000 0.000 0.000 0.000 [ MATP 32 ] 91 187 g c = = MP 124 123 6 128 6 2 4 565 1258 -8.103 -8.514 -0.010 -10.879 -13.111 -20.067 -5.200 -5.692 -7.970 2.020 -5.060 -7.710 1.495 -6.440 -5.204 2.257 -2.543 -3.490 1.889 -7.596 -3.205 -2.773 ML 125 123 6 128 6 1 1 565 1259 -0.299 -14.703 -6.960 -2.615 -14.553 -5.979 1.708 -5.271 -0.520 -6.587 MR 126 123 6 128 6 1 1 563 1257 -8.106 -6.835 -1.061 -3.010 -1.501 -5.027 0.521 0.100 -0.844 -0.096 D 127 123 6 128 6 0 0 556 1249 -15.891 -14.589 -10.386 -11.068 -11.086 -0.002 IL 128 128 5 128 6 1 1 565 1258 -10.682 -0.731 -1.334 -12.600 -13.376 -13.036 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 565 1258 -1.321 -0.739 -13.893 -12.060 -13.166 0.000 0.000 0.000 0.000 [ MATP 33 ] 93 184 G C = = MP 130 129 6 134 6 2 2 563 1256 -7.491 -9.028 -0.018 -12.743 -7.688 -13.260 -7.823 -3.163 -7.469 -2.894 -6.143 -6.289 0.328 -8.064 -6.059 3.701 -5.607 -0.688 -4.988 -6.885 -0.407 -7.285 ML 131 129 6 134 6 1 1 561 1255 -12.320 -12.666 -4.244 -0.080 -12.516 -10.046 0.204 -2.168 -2.978 1.321 MR 132 129 6 134 6 1 1 562 1255 -9.346 -8.075 -2.732 -8.053 -0.273 -6.267 -0.503 -0.843 0.315 0.578 D 133 129 6 134 6 0 0 556 1249 -15.958 -14.657 -10.454 -11.136 -11.153 -0.002 IL 134 134 5 134 6 1 1 563 1256 -9.968 -0.829 -1.199 -11.886 -12.662 -12.323 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 562 1255 -8.947 -0.005 -12.459 -10.626 -11.732 0.000 0.000 0.000 0.000 [ MATP 34 ] 95 182 a u = = MP 136 135 6 140 4 2 3 561 1254 -19.906 -20.113 -0.000 -18.528 -7.060 -5.165 -6.686 2.944 -5.840 -7.295 1.677 -5.935 -8.751 1.924 -8.038 -2.768 -0.598 -8.749 -2.816 -1.890 ML 137 135 6 140 4 1 1 560 1253 -9.468 -9.650 -0.008 -8.380 -2.208 0.026 1.293 -1.667 MR 138 135 6 140 4 1 1 561 1254 -12.469 -0.037 -5.475 -8.426 1.967 -7.921 -4.468 -4.642 D 139 135 6 140 4 0 0 556 1249 -11.442 -11.124 -4.250 -0.079 IL 140 140 5 140 4 1 1 561 1254 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 560 1253 -7.845 -0.007 -10.545 0.000 0.000 0.000 0.000 [ MATL 35 ] 96 - C - + - ML 142 141 6 144 3 1 1 559 1252 -20.825 -0.000 -13.265 -7.016 1.657 -6.130 -0.278 D 143 141 6 144 3 0 0 556 1249 -13.477 -8.990 -0.003 IL 144 144 3 144 3 1 1 560 1253 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 97 - U - + - ML 145 144 3 147 3 1 1 558 1251 -20.825 -0.000 -16.850 -7.114 -2.699 -6.514 1.937 D 146 144 3 147 3 0 0 556 1249 -13.539 -9.052 -0.003 IL 147 147 3 147 3 1 1 559 1252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 98 - u - * - ML 148 147 3 150 3 1 1 557 1250 -20.825 -0.000 -15.025 -0.013 -0.011 0.009 0.014 D 149 147 3 150 3 0 0 556 1249 -13.543 -0.062 -4.577 IL 150 150 3 150 3 1 1 557 1250 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 99 - c - * - ML 151 150 3 153 3 1 1 556 1249 -11.073 -0.001 -16.442 -0.008 0.011 0.005 -0.008 D 152 150 3 153 3 0 0 546 1239 -9.379 -3.529 -0.133 IL 153 153 3 153 3 1 1 556 1249 -4.616 -0.070 -7.316 0.000 0.000 0.000 0.000 [ MATL 39 ] 101 - a - * - ML 154 153 3 156 3 1 1 555 1248 -20.828 -0.001 -11.308 0.008 -0.011 0.005 -0.003 D 155 153 3 156 3 0 0 545 1238 -9.408 -2.128 -0.378 IL 156 156 3 156 3 1 1 555 1248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 102 - A - + - ML 157 156 3 159 3 1 1 554 1247 -2.104 -0.382 -19.482 1.458 -4.301 0.234 -5.272 D 158 156 3 159 3 0 0 541 1235 -2.554 -5.129 -0.320 IL 159 159 3 159 3 1 1 608 1301 -0.038 -5.259 -13.166 0.000 0.000 0.000 0.000 [ MATL 41 ] 180 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.437 -0.584 -6.247 -0.707 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 7 94 179 -20.829 -0.000 -13.309 IL 165 165 2 165 3 1 8 95 181 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 192 - A - + - ML 166 165 2 168 3 1 7 94 179 -6.675 -0.484 -1.860 1.127 -1.839 -1.371 0.201 D 167 165 2 168 3 0 6 92 178 -9.119 -4.632 -0.062 IL 168 168 3 168 3 1 8 97 183 -0.586 -1.583 -13.134 0.000 0.000 0.000 0.000 [ MATL 45 ] 196 - G - + - ML 169 168 3 171 2 1 7 93 179 -21.020 -0.000 -3.934 -2.164 1.811 -2.309 D 170 168 3 171 2 0 6 92 178 -18.608 -0.000 IL 171 171 3 171 2 1 7 93 179 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 6 92 178 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 69 152 -2.168 -8.285 -11.406 -0.370 [ MATP 48 ] 197 240 G C = = MP 174 173 1 178 6 2 2 76 158 -18.522 -5.129 -0.042 -17.238 -17.517 -12.524 -9.188 -5.581 -4.878 0.930 -7.279 -4.124 1.832 -8.990 -6.934 3.228 -6.772 -1.609 -0.632 -7.669 -4.458 -8.966 ML 175 173 1 178 6 1 1 66 149 -13.290 -13.636 -5.651 -0.030 -13.486 -11.015 -4.523 -4.512 1.966 -7.507 MR 176 173 1 178 6 1 1 71 153 -10.789 -9.518 -1.458 -9.496 -0.672 -7.709 -1.757 1.107 -1.726 0.320 D 177 173 1 178 6 0 0 52 135 -24.342 -23.041 -18.838 -11.525 -13.910 -0.001 IL 178 178 5 178 6 1 1 75 157 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 76 158 -1.004 -0.997 -13.785 -11.953 -13.059 0.000 0.000 0.000 0.000 [ MATP 49 ] 198 237 g c = = MP 180 179 6 184 6 2 2 74 156 -4.783 -6.995 -0.111 -9.890 -10.857 -5.127 -1.071 -4.349 -5.400 -2.344 0.192 -9.572 1.023 -10.642 -8.605 2.490 -6.368 -5.287 2.375 -7.039 0.083 -2.602 ML 181 179 6 184 6 1 1 65 147 -13.379 -13.726 -5.403 -0.036 -13.575 -11.105 -1.532 -6.187 1.791 -2.482 MR 182 179 6 184 6 1 1 60 143 -10.438 -9.167 -5.076 -9.145 -3.673 -0.172 -1.794 -1.990 -0.846 1.538 D 183 179 6 184 6 0 0 52 135 -24.342 -23.040 -14.292 -19.519 -15.452 -0.000 IL 184 184 5 184 6 1 1 70 153 -1.002 -1.002 -9.690 -13.428 -14.204 -13.864 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 68 150 -9.905 -2.471 -13.416 -0.289 -12.690 0.000 0.000 0.000 0.000 [ MATP 50 ] 201 235 g c = = MP 186 185 6 190 6 2 2 72 154 -18.424 -18.364 -0.240 -9.711 -8.078 -2.754 -9.612 -5.930 -9.161 0.689 -9.636 -0.950 2.253 -7.009 -6.739 2.479 -3.793 -4.181 -0.086 0.269 0.278 -8.531 ML 187 185 6 190 6 1 1 63 146 -13.446 -13.792 -8.506 -0.060 -13.642 -4.718 -7.182 -8.762 1.893 -1.853 MR 188 185 6 190 6 1 1 64 147 -15.180 -13.909 -9.818 -13.887 -0.027 -5.829 -6.605 -4.960 -4.578 1.969 D 189 185 6 190 6 0 0 52 135 -24.354 -23.052 -18.849 -19.532 -19.549 -0.000 IL 190 190 5 190 6 1 1 71 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 71 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 202 234 c g = = MP 192 191 6 196 6 2 2 71 153 -18.185 -18.124 -1.868 -9.855 -5.920 -0.497 -4.534 -6.092 -5.885 -1.741 -3.798 -8.678 2.831 -6.583 -4.363 2.650 -6.144 -1.987 0.559 -7.380 -1.929 -3.410 ML 193 191 6 196 6 1 1 62 145 -13.490 -13.836 -4.188 -0.101 -13.686 -6.355 -4.379 -2.187 -4.870 1.887 MR 194 191 6 196 6 1 1 64 146 -15.285 -14.014 -9.923 -5.320 -0.057 -6.318 -2.820 -8.628 1.874 -2.402 D 195 191 6 196 6 0 0 52 135 -24.410 -23.109 -7.167 -11.823 -19.605 -0.010 IL 196 196 5 196 6 1 1 75 158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 75 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 203 233 u g = = MP 198 197 6 202 6 2 2 74 157 -16.481 -16.420 -1.994 -15.197 -1.677 -1.197 0.743 -11.905 -12.155 -0.111 -10.967 -12.833 -0.856 -11.631 -12.053 -3.154 -12.450 -3.829 0.289 -1.288 2.643 2.259 ML 199 197 6 202 6 1 1 45 127 -13.636 -13.983 -0.437 -2.025 -13.832 -6.011 0.813 -1.037 0.517 -1.624 MR 200 197 6 202 6 1 1 63 145 -15.653 -14.382 -2.435 -14.360 -5.136 -0.346 -2.746 -1.921 1.650 -1.159 D 201 197 6 202 6 0 0 23 103 -24.608 -23.306 -9.916 -19.786 -19.803 -0.001 IL 202 202 5 202 6 1 1 65 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 67 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 204 232 u g = = MP 204 203 6 208 6 2 2 41 124 -15.022 -14.961 -0.679 -3.058 -14.018 -1.970 -11.055 -2.075 0.020 1.406 -13.341 -14.511 -8.806 -11.290 -10.811 -2.094 1.499 -0.030 1.206 -12.548 2.253 -0.026 ML 205 203 6 208 6 1 1 47 129 -11.629 -11.975 -6.689 -0.226 -11.825 -2.892 1.505 -4.125 -4.430 0.082 MR 206 203 6 208 6 1 1 78 160 -16.243 -14.972 -5.756 -14.950 -0.044 -6.487 -10.212 1.983 -10.636 -4.460 D 207 203 6 208 6 0 0 21 100 -24.657 -23.355 -19.152 -14.224 -19.851 -0.000 IL 208 208 5 208 6 1 1 64 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 66 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 205 231 g u = = MP 210 209 6 214 4 2 2 36 118 -13.587 -0.097 -3.952 -12.208 -11.398 -11.604 -10.732 -7.846 -9.102 -10.895 2.766 -10.006 -10.826 -7.842 -10.956 2.863 0.925 -11.257 -6.804 -9.633 ML 211 209 6 214 4 1 1 45 127 -10.407 -0.483 -1.825 -9.319 -7.156 1.387 -8.238 0.458 MR 212 209 6 214 4 1 1 77 159 -0.104 -13.255 -3.863 -10.183 1.900 -1.909 -9.920 -9.520 D 213 209 6 214 4 0 0 20 96 -20.086 -7.297 -2.404 -0.314 IL 214 214 5 214 4 1 1 76 158 -0.322 -13.789 -2.321 -16.274 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 26 88 -2.188 -0.378 -6.523 0.000 0.000 0.000 0.000 [ MATL 55 ] 211 - u - + - ML 216 215 6 218 3 1 1 24 86 -18.652 -0.001 -10.517 -0.058 -1.320 -0.369 0.899 D 217 215 6 218 3 0 0 6 67 -21.887 -10.098 -0.001 IL 218 218 3 218 3 1 1 25 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 212 - U - + - ML 219 218 3 221 3 1 1 23 85 -18.655 -0.030 -5.617 -1.340 0.408 -3.662 1.137 D 220 218 3 221 3 0 0 5 67 -21.886 -11.962 -0.000 IL 221 221 3 221 3 1 1 24 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 213 - U - + - ML 222 221 3 224 3 1 1 22 84 -14.585 -1.449 -0.658 0.379 -1.102 -3.496 1.101 D 223 221 3 224 3 0 0 4 66 -21.894 -17.407 -0.000 IL 224 224 3 224 3 1 1 55 117 -0.429 -2.389 -3.910 0.000 0.000 0.000 0.000 [ MATL 58 ] 228 - g - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.435 -2.916 0.523 0.109 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 6 79 165 -20.829 -0.021 -6.107 IL 230 230 2 230 3 1 7 80 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 241 - G - + - ML 231 230 2 233 3 1 9 79 165 -0.408 -2.020 -19.462 -1.416 -6.185 1.824 -3.799 D 232 230 2 233 3 0 4 77 164 -5.549 -0.064 -5.489 IL 233 233 3 233 3 1 8 78 165 -6.782 -0.013 -17.806 0.000 0.000 0.000 0.000 [ MATL 62 ] 244 - C - + - ML 234 233 3 236 5 1 7 77 164 -19.761 -0.000 -14.936 -12.582 -20.680 -4.599 1.712 -3.374 -0.769 D 235 233 3 236 5 0 0 76 162 -8.678 -0.351 -4.897 -2.584 -6.227 IL 236 236 3 236 5 1 1 77 164 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 245 296 g c = = MP 237 236 3 241 6 2 8 76 163 -8.115 -4.637 -0.065 -14.032 -13.102 -20.079 -5.440 -3.406 -5.209 0.637 -4.776 -3.250 2.540 -5.398 -6.752 2.894 -5.857 -0.651 -2.692 -7.389 -4.119 -7.660 ML 238 236 3 241 6 1 1 74 161 -7.659 -8.005 -0.569 -1.792 -7.854 -5.384 -0.217 -0.726 0.014 0.609 MR 239 236 3 241 6 1 2 74 161 -10.089 -8.818 -0.749 -8.796 -1.351 -7.010 -1.493 1.300 -1.157 -0.445 D 240 236 3 241 6 0 0 70 156 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 5 75 162 -9.354 -9.617 -0.005 -11.272 -12.048 -11.709 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 6 75 162 -2.043 -0.401 -15.841 -14.009 -15.115 0.000 0.000 0.000 0.000 [ MATP 64 ] 247 292 c g = = MP 243 242 6 247 6 2 8 74 161 -6.532 -20.628 -0.016 -14.424 -14.674 -20.079 -7.716 -5.837 -3.199 -0.181 -5.104 -7.366 2.855 -6.403 -8.427 0.703 -7.948 -3.103 2.370 -4.775 -0.497 -4.765 ML 244 242 6 247 6 1 1 73 159 -8.114 -8.461 -0.258 -2.869 -8.310 -5.840 0.294 -1.001 0.438 -0.121 MR 245 242 6 247 6 1 1 72 159 -9.949 -8.678 -0.431 -8.656 -2.036 -6.869 0.591 0.241 -0.744 -0.485 D 246 242 6 247 6 0 0 68 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 5 75 162 -0.672 -12.615 -1.426 -14.270 -15.046 -14.707 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 73 160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 251 291 G C = = MP 249 248 6 253 6 2 7 72 159 -7.104 -20.628 -0.011 -19.405 -14.409 -20.080 -7.850 -5.179 -5.758 1.243 -6.627 -8.136 0.533 -8.075 -6.859 3.210 -8.071 -3.018 0.427 -6.339 0.403 -4.316 ML 250 248 6 253 6 1 1 70 157 -7.733 -8.079 -0.739 -1.452 -7.929 -5.458 -0.265 -0.118 -0.668 0.693 MR 251 248 6 253 6 1 1 70 157 -8.855 -7.584 -0.521 -7.562 -1.878 -5.775 -1.042 1.327 -1.413 -0.666 D 252 248 6 253 6 0 0 67 153 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 5 72 158 -1.317 -11.361 -0.742 -13.016 -13.792 -13.452 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 71 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 254 290 G C = = MP 255 254 6 259 6 2 5 70 157 -8.099 -8.043 -0.020 -7.321 -16.225 -20.080 -10.372 -3.956 -9.452 0.505 -10.556 -6.741 -2.927 -8.212 -3.986 3.800 -7.469 -3.404 -1.969 -6.137 -8.195 -9.121 ML 256 254 6 259 6 1 1 69 156 -6.857 -7.203 -0.717 -1.612 -7.053 -4.582 -0.078 -0.986 0.847 -0.416 MR 257 254 6 259 6 1 1 68 155 -8.580 -7.309 -0.659 -7.287 -1.603 -5.501 -0.203 -0.241 0.224 0.160 D 258 254 6 259 6 0 0 66 153 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 4 69 156 -9.370 -9.632 -0.005 -11.288 -12.064 -11.724 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 4 69 156 -8.542 -0.006 -12.053 -10.220 -11.326 0.000 0.000 0.000 0.000 [ MATP 67 ] 256 288 G C = = MP 261 260 6 265 4 2 3 68 155 -8.424 -8.925 -0.007 -14.109 -9.395 -5.156 -10.376 -7.420 -19.584 -5.548 -14.527 -17.949 -6.059 3.982 -5.401 -4.088 -5.526 -5.308 -16.661 -11.443 ML 262 260 6 265 4 1 2 68 155 -2.364 -0.352 -5.556 -10.246 -4.096 -0.304 0.827 0.441 MR 263 260 6 265 4 1 1 66 153 -5.794 -4.823 -1.323 -0.870 -0.273 0.226 -0.990 0.584 D 264 260 6 265 4 0 0 65 152 -4.568 -4.250 -2.265 -0.520 IL 265 265 5 265 4 1 2 67 154 -8.871 -2.434 -0.299 -12.039 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 1 67 154 -1.362 -0.974 -3.294 0.000 0.000 0.000 0.000 [ MATL 68 ] 258 - U - + - ML 267 266 6 269 3 1 1 66 153 -6.086 -0.022 -12.328 -3.472 -6.575 -7.346 1.961 D 268 266 6 269 3 0 0 65 151 -12.739 -0.011 -7.130 IL 269 269 3 269 3 1 1 70 156 -0.500 -1.772 -13.909 0.000 0.000 0.000 0.000 [ MATL 69 ] 263 - U - + - ML 270 269 3 272 3 1 2 65 151 -6.095 -0.021 -16.382 -7.750 -6.034 -7.459 1.991 D 271 269 3 272 3 0 0 62 149 -10.012 -5.525 -0.033 IL 272 272 3 272 3 1 1 69 156 -0.467 -1.854 -13.983 0.000 0.000 0.000 0.000 [ MATL 70 ] 268 - C - + - ML 273 272 3 275 3 1 1 63 150 -6.097 -0.021 -16.764 -3.862 1.942 -6.967 -3.610 D 274 272 3 275 3 0 0 62 149 -10.082 -0.068 -4.474 IL 275 275 3 275 3 1 1 67 154 -0.516 -1.734 -13.862 0.000 0.000 0.000 0.000 [ MATL 71 ] 273 - G - + - ML 276 275 3 278 3 1 1 62 149 -8.054 -0.005 -15.198 0.389 -6.446 1.418 -7.242 D 277 275 3 278 3 0 0 59 146 -6.783 -0.868 -1.175 IL 278 278 3 278 3 1 1 62 149 -7.489 -0.009 -10.189 0.000 0.000 0.000 0.000 [ MATL 72 ] 275 - A - + - ML 279 278 3 281 3 1 1 61 148 -5.586 -0.030 -16.154 1.987 -7.603 -6.271 -5.738 D 280 278 3 281 3 0 0 54 140 -7.629 -0.418 -2.020 IL 281 281 3 281 3 1 1 79 165 -0.306 -2.388 -15.026 0.000 0.000 0.000 0.000 [ MATL 73 ] 282 - a - + - ML 282 281 3 284 3 1 1 15 34 -7.012 -0.012 -11.249 0.534 -2.333 -0.095 0.503 D 283 281 3 284 3 0 0 14 33 -7.063 -2.576 -0.278 IL 284 284 3 284 3 1 1 19 38 -1.347 -0.721 -11.937 0.000 0.000 0.000 0.000 [ MATL 74 ] 285 - U - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 -2.743 0.769 -5.462 1.087 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-031616 LENG 90 MAXL 628 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Wed Mar 16 23:05:31 2016 COM [1] cmbuild -F --enone --hand euk-031616.cm euk-031616.sto NSEQ 28278 EFFN 109.668755 CKSUM 980995084 STATS LOCAL MSV -8.9560 0.71851 STATS LOCAL VITERBI -9.5623 0.71851 STATS LOCAL FORWARD -3.4599 0.71851 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58335 1.37592 1.17426 1.45648 1.38629 1.38629 1.38629 1.38629 0.00253 6.67354 6.67354 1.46634 0.26236 0.00000 * 1 2.83488 2.89415 0.24992 2.23430 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.00918 6.67354 4.84364 1.46634 0.26236 1.09861 0.40547 2 2.72257 0.70201 1.29247 1.80720 3 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01452 5.29324 4.66782 0.44686 1.02063 1.30583 0.31601 3 2.26101 0.59413 2.09187 1.51295 5 C = - ( 1.38629 1.38629 1.38629 1.38629 0.01380 4.55986 5.73045 0.59533 0.80158 1.23206 0.34488 4 2.02951 1.17045 1.24745 1.30513 8 c = - ( 1.38629 1.38629 1.38629 1.38629 0.01726 4.18951 6.23416 1.23586 0.34331 2.38705 0.09640 5 1.88507 1.30833 1.18987 1.29592 13 g = - ( 1.38629 1.38629 1.38629 1.38629 0.01184 4.56183 6.62553 0.52605 0.89388 0.83007 0.57274 6 2.01914 1.45685 0.89847 1.48250 16 g = - ( 1.38629 1.38629 1.38629 1.38629 0.00623 5.50404 6.14609 0.53896 0.87553 0.34462 1.23268 7 1.19258 2.19609 0.80380 1.98267 18 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02319 3.83541 6.61986 1.45749 0.26503 1.06672 0.42180 8 5.07226 4.89480 5.47597 0.01810 25 U + - , 1.38629 1.38629 1.38629 1.38629 0.03061 3.54670 6.62299 0.21170 1.65656 0.85709 0.55234 9 0.80903 4.85946 0.61501 5.06367 28 G + - , 1.38629 1.38629 1.38629 1.38629 0.02890 3.60459 6.65219 0.19410 1.73488 0.99135 0.46374 10 3.13715 3.23057 0.11437 3.68354 31 G = - < 1.38629 1.38629 1.38629 1.38629 0.00741 5.09616 6.67372 0.37165 1.16987 1.10577 0.40191 11 4.19125 0.34748 4.02430 1.34504 33 C = - < 1.38629 1.38629 1.38629 1.38629 0.00256 6.67372 6.65145 1.46634 0.26236 1.10577 0.40191 12 3.22914 1.15861 1.59574 0.81255 34 u = - < 1.38629 1.38629 1.38629 1.38629 0.00610 5.34039 6.65854 0.46333 0.99206 1.09092 0.40933 13 3.31471 0.61865 1.66506 1.44476 36 C = - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67370 6.67370 1.46634 0.26236 1.09565 0.40695 14 0.01363 6.17269 4.72322 5.96397 38 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02728 3.66440 6.65110 1.55149 0.23817 1.10577 0.40191 15 1.93194 5.34413 0.16910 5.12770 45 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00273 6.67369 6.52886 1.46634 0.26236 1.07963 0.41510 16 3.74743 1.94303 3.39780 0.22351 46 U + - _ 1.38629 1.38629 1.38629 1.38629 0.96363 4.19471 0.50515 1.39062 0.28624 1.15247 0.37958 17 3.36505 1.13456 3.49126 0.48872 51 U + - _ 1.38629 1.38629 1.38629 1.38629 0.10016 2.38741 5.67259 0.55199 0.85755 0.00421 5.47135 18 5.02313 6.47056 0.01026 6.17849 56 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00401 6.67363 5.90092 1.46634 0.26236 1.05819 0.42631 19 4.85768 6.29786 0.01317 5.66249 57 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.67225 6.58021 1.46634 0.26236 0.65673 0.73095 20 2.79251 3.17842 2.96560 0.16777 58 U + - _ 1.38629 1.38629 1.38629 1.38629 0.84055 0.56718 6.56948 0.40097 1.10765 1.04366 0.43412 21 0.06998 4.41195 5.09784 3.00882 69 A + - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67359 6.67359 1.46634 0.26236 1.02069 0.44683 22 1.35578 3.66612 0.51845 2.11003 70 G = - > 1.38629 1.38629 1.38629 1.38629 0.00655 5.24825 6.66519 0.42653 1.05778 1.09861 0.40547 23 0.87630 1.59422 1.06958 3.28454 72 a = - > 1.38629 1.38629 1.38629 1.38629 0.00615 5.32465 6.67374 0.45682 1.00319 1.09292 0.40833 24 1.41405 4.07632 0.32771 3.94750 74 G = - > 1.38629 1.38629 1.38629 1.38629 0.00578 5.40438 6.67375 0.49054 0.94752 1.09861 0.40547 25 3.78224 0.25068 3.21601 1.83987 76 C = - > 1.38629 1.38629 1.38629 1.38629 0.01702 4.16683 6.59100 1.20545 0.35604 1.09861 0.40547 26 1.41698 3.96271 0.55534 1.80384 81 G + - , 1.38629 1.38629 1.38629 1.38629 0.00678 5.21108 6.64342 0.41250 1.08469 1.04421 0.43382 27 2.27055 1.10118 2.24909 0.77920 83 u = - < 1.38629 1.38629 1.38629 1.38629 0.01638 4.26887 6.09923 1.21959 0.35005 1.10879 0.40042 28 2.20756 1.18218 1.71677 0.90689 88 u = - < 1.38629 1.38629 1.38629 1.38629 0.01380 4.57727 5.67678 0.49588 0.93914 0.74766 0.64145 29 1.37181 1.67346 1.19044 1.36779 91 g = - < 1.38629 1.38629 1.38629 1.38629 0.01168 4.59165 6.51747 0.23351 1.56903 1.52927 0.24423 30 3.32376 2.48795 0.19479 2.84916 93 G = - < 1.38629 1.38629 1.38629 1.38629 0.01282 5.01101 5.10422 0.34459 1.23276 1.57081 0.23304 31 0.78885 1.60786 1.33191 2.50903 95 a = - < 1.38629 1.38629 1.38629 1.38629 0.00255 6.66660 6.66660 1.46634 0.26236 0.56926 0.83458 32 4.94041 0.24273 5.09455 1.59834 96 C + - _ 1.38629 1.38629 1.38629 1.38629 0.00263 6.67154 6.59740 1.46634 0.26236 1.55827 0.23636 33 5.01172 3.18000 5.18393 0.05536 97 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00254 6.67144 6.66601 1.46634 0.26236 1.57434 0.23211 34 1.37728 1.41116 1.39998 1.35761 98 u * - _ 1.38629 1.38629 1.38629 1.38629 0.00256 6.67143 6.64970 1.46634 0.26236 0.55906 0.84804 35 1.37409 1.39714 1.40290 1.37143 99 u * - _ 1.38629 1.38629 1.38629 1.38629 0.00299 6.36852 6.66608 1.12828 0.39096 1.12329 0.39335 36 1.36413 1.41094 1.40261 1.36835 101 a * - _ 1.38629 1.38629 1.38629 1.38629 0.00291 6.67363 6.40943 1.46634 0.26236 1.04667 0.43248 37 0.37771 4.19763 1.23713 4.67509 102 A + - _ 1.38629 1.38629 1.38629 1.38629 0.25972 1.48073 6.67336 3.63825 0.02665 1.18938 0.36299 38 0.39354 1.80354 4.81954 1.88025 180 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01127 5.12248 5.25110 0.38078 1.14989 0.93045 0.50150 39 2.85138 1.37955 1.56004 0.73310 182 u = - > 1.38629 1.38629 1.38629 1.38629 0.00756 5.08516 6.61213 0.36928 1.17517 1.64349 0.21481 40 4.34373 0.23675 2.06106 2.65206 184 C = - > 1.38629 1.38629 1.38629 1.38629 0.01065 4.67961 6.63629 0.25395 1.49491 1.45153 0.26685 41 1.43778 1.25157 1.56618 1.31808 187 c = - > 1.38629 1.38629 1.38629 1.38629 0.01579 5.26348 4.55733 0.43371 1.04440 1.15763 0.37721 42 1.00563 1.71549 1.14008 2.00606 189 a = - > 1.38629 1.38629 1.38629 1.38629 0.01861 5.50358 4.24276 0.54119 0.87240 0.75143 0.63807 43 0.95842 3.52640 0.84507 1.84791 191 g = - > 1.38629 1.38629 1.38629 1.38629 0.00267 6.65506 6.58297 1.46634 0.26236 0.12024 2.17782 44 0.63387 2.54563 2.27351 1.24448 192 A + - , 1.38629 1.38629 1.38629 1.38629 0.32821 4.53052 1.31299 1.13090 0.38970 1.12322 0.39338 45 3.57518 2.85316 0.15177 2.89788 196 G + - , 1.38629 1.38629 1.38629 1.38629 2.30244 6.36203 0.10730 1.46634 0.26236 0.45303 1.00978 46 1.88365 1.66612 0.53461 2.61608 197 G = - < 1.38629 1.38629 1.38629 1.38629 0.01042 5.27602 5.24801 1.46634 0.26236 6.12899 0.00218 47 2.16724 1.50826 1.19484 1.01761 198 u = - < 1.38629 1.38629 1.38629 1.38629 0.06990 3.29975 3.48598 0.25697 1.48455 6.36641 0.00172 48 1.88036 1.23962 1.15910 1.40977 201 g = - < 1.38629 1.38629 1.38629 1.38629 0.18757 5.25173 1.79703 1.46634 0.26236 6.40269 0.00166 49 2.54455 0.93807 1.06983 1.67642 202 c = - < 1.38629 1.38629 1.38629 1.38629 0.98415 5.07671 0.47803 1.46634 0.26236 4.71447 0.00901 50 1.55731 1.64335 1.74115 0.86596 203 u = - < 1.38629 1.38629 1.38629 1.38629 0.69132 4.19837 0.72554 1.46634 0.26236 5.37678 0.00463 51 1.48470 1.53386 1.43744 1.13883 204 u = - < 1.38629 1.38629 1.38629 1.38629 0.17229 3.63004 2.02688 1.46634 0.26236 4.04354 0.01769 52 1.86324 1.23358 1.18611 1.39362 205 g = - < 1.38629 1.38629 1.38629 1.38629 0.36251 1.26465 3.82893 1.39026 0.28636 1.62687 0.21883 53 1.35708 2.08115 1.65321 0.85245 211 u + - _ 1.38629 1.38629 1.38629 1.38629 0.01107 5.25799 5.14910 1.46634 0.26236 5.96671 0.00257 54 2.11823 1.12822 3.21385 0.66175 212 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02885 5.26022 3.76173 1.46634 0.26236 6.26317 0.00191 55 1.16114 1.99592 2.82082 0.71045 213 u + - _ 1.38629 1.38629 1.38629 1.38629 0.73861 5.23641 0.65990 1.48720 0.25619 5.61308 0.00366 56 1.13401 2.25690 1.22203 1.27671 228 a + - _ 1.38629 1.38629 1.38629 1.38629 1.12383 2.80026 0.48748 0.32064 1.29348 3.98787 0.01871 57 1.26497 1.66312 1.23581 1.43714 231 g = - > 1.38629 1.38629 1.38629 1.38629 0.13454 3.89403 2.24890 1.46634 0.26236 4.77679 0.00846 58 1.60102 1.24494 1.29846 1.43802 232 c = - > 1.38629 1.38629 1.38629 1.38629 0.10636 3.91609 2.51351 1.46634 0.26236 3.35034 0.03570 59 1.47857 1.88420 1.08206 1.26873 233 g = - > 1.38629 1.38629 1.38629 1.38629 0.09416 4.27996 2.57682 1.46634 0.26236 2.00252 0.14502 60 1.87289 1.14968 0.85547 2.25858 234 g = - > 1.38629 1.38629 1.38629 1.38629 0.01225 5.10126 5.10126 1.46634 0.26236 3.22594 0.04053 61 2.01160 1.04675 1.08410 1.73194 235 c = - > 1.38629 1.38629 1.38629 1.38629 0.05270 3.08963 5.14634 0.21899 1.62621 4.56720 0.01044 62 1.04097 1.24515 1.41344 2.15687 237 a = - > 1.38629 1.38629 1.38629 1.38629 0.03672 3.49105 5.18834 0.81306 0.58608 6.37043 0.00171 63 2.80160 0.58583 1.61718 1.69181 240 C = - > 1.38629 1.38629 1.38629 1.38629 0.05868 5.26479 2.95989 1.46634 0.26236 0.00651 5.03843 64 2.33762 4.87256 0.13581 3.78192 241 G + - , 1.38629 1.38629 1.38629 1.38629 1.32651 0.31018 6.65986 0.01256 4.38389 0.17556 1.82630 65 4.13663 0.21214 3.66206 1.90053 244 C + - , 1.38629 1.38629 1.38629 1.38629 0.00269 6.67345 6.55606 1.46634 0.26236 0.99283 0.46287 66 2.14883 1.05456 0.67504 3.65360 245 G = - < 1.38629 1.38629 1.38629 1.38629 0.00616 5.34512 6.59047 0.46535 0.98863 1.05322 0.42896 67 2.59664 0.82077 2.12821 1.00421 247 c = - < 1.38629 1.38629 1.38629 1.38629 0.01316 4.44190 6.64545 1.02921 0.44206 1.03464 0.43906 68 1.85158 2.36701 0.54059 1.79067 251 G = - < 1.38629 1.38629 1.38629 1.38629 0.00969 4.78747 6.63980 0.65741 0.73021 1.07053 0.41981 69 2.25774 3.99389 0.16309 3.59475 254 G = - < 1.38629 1.38629 1.38629 1.38629 0.00610 5.33724 6.66460 0.46202 0.99428 1.07922 0.41530 70 4.87902 5.50819 0.01823 5.05001 256 G = - < 1.38629 1.38629 1.38629 1.38629 0.00786 5.24747 5.96291 0.42623 1.05833 1.09566 0.40695 71 3.64653 4.84021 5.41124 0.03921 258 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01718 4.16176 6.53406 1.24278 0.34049 0.68209 0.70433 72 5.16921 4.74617 5.48523 0.01870 263 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01690 4.16779 6.66564 1.29618 0.31962 1.14689 0.38217 73 4.01678 0.04460 5.62711 3.81635 268 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01688 4.16883 6.66771 1.21837 0.35057 1.00415 0.45627 74 1.10999 5.24420 0.41497 5.33937 273 G + - _ 1.38629 1.38629 1.38629 1.38629 0.00623 5.31437 6.65450 0.45264 1.01046 1.09472 0.40742 75 0.01232 6.04474 5.43586 5.19942 275 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02304 3.83945 6.66427 1.64994 0.21327 1.08583 0.41192 76 1.02707 2.80674 1.46697 1.04719 282 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01051 4.73323 6.39984 0.63832 0.75116 1.10177 0.40389 77 3.14988 0.85808 4.70006 0.64612 285 U + - _ 1.38629 1.38629 1.38629 1.38629 0.00991 4.82317 6.31004 0.28932 1.38140 0.92025 0.50820 78 5.54729 0.01690 5.70473 4.65376 288 C = - > 1.38629 1.38629 1.38629 1.38629 0.00625 5.30800 6.66337 0.45028 1.01460 0.87161 0.54176 79 3.60307 0.17507 3.88795 2.18149 290 C = - > 1.38629 1.38629 1.38629 1.38629 0.00256 6.67374 6.65000 1.46634 0.26236 1.10190 0.40383 80 2.44051 0.55957 1.76638 1.76914 291 C = - > 1.38629 1.38629 1.38629 1.38629 0.00259 6.67371 6.62504 1.46634 0.26236 1.07651 0.41670 81 1.14524 2.18737 0.71499 2.52023 292 g = - > 1.38629 1.38629 1.38629 1.38629 0.04253 3.21038 6.64784 0.32052 1.29379 1.07126 0.41943 82 3.77672 0.73903 1.05800 1.88138 296 c = - > 1.38629 1.38629 1.38629 1.38629 0.03189 3.55419 5.88521 1.29886 0.31861 1.07821 0.41583 83 1.99420 0.94494 2.07826 1.04975 303 c = - ) 1.38629 1.38629 1.38629 1.38629 0.00775 5.30796 5.88826 0.45068 1.01389 0.84244 0.56327 84 1.84513 1.30044 1.25533 1.25667 305 g = - ) 1.38629 1.38629 1.38629 1.38629 0.00652 5.30199 6.49073 0.44848 1.01776 1.29557 0.31985 85 1.45846 1.49221 1.17906 1.44833 307 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01397 4.39430 6.48582 0.76534 0.62582 0.70622 0.68025 86 1.72583 1.35293 0.90499 1.83918 311 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01559 4.25601 6.65122 0.16974 1.85718 1.04614 0.43277 87 1.64047 2.44130 0.55033 1.94978 313 G = - ) 1.38629 1.38629 1.38629 1.38629 0.01401 4.37097 6.66564 0.88314 0.53355 1.15306 0.37931 88 1.76727 1.51986 0.71259 2.11953 317 g = - ) 1.38629 1.38629 1.38629 1.38629 0.01584 4.23693 6.67322 0.85552 0.55349 0.95108 0.48829 89 2.25475 0.28766 2.83261 2.45076 321 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01705 4.15980 6.65192 1.08991 0.40984 1.09861 0.40547 90 0.58037 3.17168 1.42885 1.84019 325 A + - : 1.38629 1.38629 1.38629 1.38629 0.00129 6.65063 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-euk-SeC.cm0000644000543100007160000016721612712034725017717 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME euk-SeC-050216 STATES 280 NODES 70 CLEN 87 W 101 ALPH RNA RF yes CONS yes MAP yes DATE Mon May 2 18:05:24 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-SeC-050216.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-SeC-050216.sto COM [2] cmcalibrate /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-SeC-050216.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 65 EFFN 65.000000 CKSUM 667121502 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.1277 0.71869 ECMLC 0.67931 -6.85370 2.59384 1600000 735225 0.001632 ECMGC 0.35634 -51.41264 -37.94932 1600000 48481 0.008251 ECMLI 0.62007 -7.42243 2.85689 1600000 703582 0.001706 ECMGI 0.36643 -46.52343 -33.61727 1600000 45285 0.008833 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 120 -10.990 -12.235 -0.005 -8.689 IL 1 1 2 1 4 18 49 103 121 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 51 104 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 91 - G - + MR 3 2 3 5 5 23 55 102 120 -11.049 -0.002 -10.864 -11.076 -11.968 -2.458 -8.104 1.929 -7.225 D 4 2 3 5 5 15 44 100 118 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 18 49 102 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 90 G C = = MP 6 5 3 10 6 24 55 101 119 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.898 -6.641 -11.786 -4.069 -11.584 -7.841 -5.936 -11.415 -8.002 3.933 -8.208 -0.708 -6.286 -8.294 -8.362 -10.693 ML 7 5 3 10 6 16 46 99 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 16 45 99 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 12 40 97 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 17 48 100 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 18 48 100 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 89 C G = = MP 12 11 6 16 6 24 54 99 117 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.021 -9.302 -8.338 -5.538 -6.689 -8.483 3.922 -7.604 -8.442 -5.510 -8.562 -7.704 -1.018 -8.855 -1.935 -7.244 ML 13 11 6 16 6 16 45 97 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 16 45 97 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 12 40 95 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 17 47 98 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 17 48 98 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 88 C G = = MP 18 17 6 22 6 23 52 97 115 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.982 -6.617 -6.908 1.523 -5.783 -7.653 3.250 -6.443 -6.812 1.122 -7.271 -4.212 -0.668 -0.853 -3.283 -5.545 ML 19 17 6 22 6 16 45 95 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 16 44 95 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 11 40 93 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 17 47 96 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 17 47 96 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 87 c g = = MP 24 23 6 28 6 22 51 95 113 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.357 -6.081 -6.367 0.888 -2.698 -7.210 2.906 -5.918 -6.235 0.945 -6.751 -0.932 0.209 -6.547 1.467 -4.972 ML 25 23 6 28 6 16 44 93 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 15 44 93 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 11 39 91 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 17 46 94 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 17 46 94 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 86 G C = = MP 30 29 6 34 6 21 49 93 111 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -1.585 -4.834 -6.019 -0.355 -7.132 -6.619 2.015 -6.694 -6.437 3.178 -6.691 -0.149 -2.472 -0.919 -4.214 -4.979 ML 31 29 6 34 6 15 44 91 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 15 43 91 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 11 39 89 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 16 45 92 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 16 46 92 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 85 g c = = MP 36 35 6 40 6 19 47 91 109 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -1.448 -4.853 -6.032 1.001 -7.152 -6.652 -2.241 -6.702 0.296 2.398 -6.706 2.387 0.152 -5.905 -1.166 -4.992 ML 37 35 6 40 6 15 43 89 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 14 42 89 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 10 38 87 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 16 44 90 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 16 44 90 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 84 A U = = MP 42 41 6 46 6 17 45 89 107 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.095 -6.909 -8.115 3.554 -8.276 -9.746 -1.095 -7.983 -0.626 0.426 -0.769 -4.262 -4.546 -9.029 0.110 -6.802 ML 43 41 6 46 6 14 42 88 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 13 41 88 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 10 38 86 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 15 43 88 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 15 43 88 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 83 U U = = MP 48 47 6 52 6 15 43 87 105 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.952 -8.981 -8.332 -5.235 -6.754 -8.545 -0.277 -7.630 -8.401 -5.285 -8.556 -7.030 -3.478 -2.251 -4.455 3.882 ML 49 47 6 52 6 13 41 87 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 12 40 87 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 10 38 85 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 14 42 87 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 14 41 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 82 G C = = MP 54 53 6 58 4 13 41 85 103 -11.189 -11.396 -0.003 -9.810 -9.886 -6.641 -11.741 -4.064 -11.578 -7.845 -5.936 -11.383 -8.001 3.921 -8.208 -0.456 -6.283 -8.296 -8.359 -10.636 ML 55 53 6 58 4 12 40 86 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 11 39 86 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 10 37 85 104 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 12 40 88 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 12 40 87 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - + - ML 60 59 6 62 3 11 39 82 101 -12.104 -0.001 -10.758 1.995 -8.223 -7.486 -7.616 D 61 59 6 62 3 9 37 82 100 -6.174 -1.687 -0.566 IL 62 62 3 62 3 11 39 86 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - + - ML 63 62 3 65 2 10 38 81 99 -12.747 -0.000 -2.529 -1.254 1.019 0.466 D 64 62 3 65 2 9 37 80 99 -8.445 -0.004 IL 65 65 3 65 2 10 38 83 101 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 66 65 3 67 179 9 37 80 98 [ BEGL 14 ] - - - - - - S 67 66 1 68 1 0 8 47 65 0.000 [ BIF 15 ] - - - - - - B 68 67 1 69 119 0 8 47 65 [ BEGL 16 ] - - - - - - S 69 68 1 70 4 0 0 27 45 -0.004 -10.162 -9.569 -10.210 [ MATP 17 ] 12 28 C G = = MP 70 69 1 74 6 2 2 27 45 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.995 -9.262 -8.324 -5.483 -6.681 -0.420 3.577 -7.593 -8.424 -5.446 -8.550 -7.630 1.380 -8.836 -0.662 -7.225 ML 71 69 1 74 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 1 74 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 1 74 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 27 c g = = MP 76 75 6 80 6 2 2 25 43 -4.022 -12.017 -0.094 -10.793 -11.073 -11.468 -7.077 -6.834 -6.981 -2.690 -5.747 -7.679 2.750 -6.455 -6.879 0.237 -7.327 -4.453 2.216 -7.216 1.503 -1.588 ML 77 75 6 80 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 79 75 6 80 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 80 80 5 80 6 1 1 24 42 -5.094 -5.357 -0.107 -7.012 -7.788 -7.449 0.000 0.000 0.000 0.000 IR 81 81 6 81 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 26 U G = = MP 82 81 6 86 6 2 2 23 41 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.147 -7.118 -8.109 1.100 -7.701 -9.449 1.353 -7.815 -7.847 -0.590 -8.355 -0.962 -3.985 -8.965 3.324 -6.788 ML 83 81 6 86 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 84 81 6 86 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 85 81 6 86 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 86 86 5 86 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 87 87 6 87 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 25 c g = = MP 88 87 6 92 6 2 2 21 39 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.831 -5.953 -6.775 1.337 -0.498 -7.627 2.958 -6.676 -6.784 1.716 -7.230 0.383 -2.063 -6.928 -3.757 -5.501 ML 89 87 6 92 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 90 87 6 92 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 91 87 6 92 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 92 92 5 92 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 93 93 6 93 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 24 a u = = MP 94 93 6 98 6 2 2 19 37 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.684 -5.527 -6.535 2.702 -6.670 -7.202 1.562 -6.793 -6.777 2.344 -7.103 -3.139 0.227 -6.524 -4.020 -5.400 ML 95 93 6 98 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 96 93 6 98 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 97 93 6 98 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 98 98 5 98 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 99 99 6 99 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 23 c g = = MP 100 99 6 104 4 2 2 16 35 -11.189 -11.396 -0.003 -9.810 -7.651 -6.445 -7.619 1.113 -7.871 -8.767 2.860 -7.667 -0.441 2.491 -7.994 -3.893 -3.790 -8.045 -5.321 -6.372 ML 101 99 6 104 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 102 99 6 104 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 103 99 6 104 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 104 104 5 104 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 105 105 6 105 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - U - + - ML 106 105 6 108 3 1 1 13 32 -12.104 -0.001 -10.758 -5.426 -5.249 -3.189 1.941 D 107 105 6 108 3 0 0 16 34 -6.174 -1.687 -0.566 IL 108 108 3 108 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - + - ML 109 108 3 111 3 1 1 12 30 -12.104 -0.001 -10.758 -6.720 -8.488 1.994 -7.481 D 110 108 3 111 3 0 0 15 33 -6.174 -1.687 -0.566 IL 111 111 3 111 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - + - ML 112 111 3 114 3 1 1 10 29 -12.104 -0.001 -10.758 -6.720 -8.488 1.994 -7.481 D 113 111 3 114 3 0 0 13 32 -6.174 -1.687 -0.566 IL 114 114 3 114 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - + - ML 115 114 3 117 2 1 1 1 1 * 0.000 -4.959 -2.050 -1.915 1.791 D 116 114 3 117 2 0 0 0 0 * 0.000 IL 117 117 3 117 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 118 117 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 119 68 1 120 5 0 0 30 48 -11.049 -0.002 -10.864 -11.076 -11.968 IL 120 120 2 120 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 29 47 U A = = MP 121 120 2 125 6 2 2 30 48 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.041 -6.725 -8.208 0.339 -9.704 -11.076 -5.252 -8.206 -7.788 -3.382 -0.764 0.535 3.648 -9.466 -7.138 -6.818 ML 122 120 2 125 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 123 120 2 125 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 124 120 2 125 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 125 125 5 125 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 126 126 6 126 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 46 G U = = MP 127 126 6 131 6 2 2 28 46 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.087 -6.802 -8.216 0.534 -9.184 -10.688 -0.979 -8.162 -7.821 -3.453 -8.446 3.651 -1.223 -9.422 -6.707 -0.113 ML 128 126 6 131 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 6 131 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 6 131 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 131 131 5 131 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 45 C G = = MP 133 132 6 137 6 2 2 26 44 -12.077 -12.017 -0.066 -4.521 -11.073 -11.468 -7.975 -7.766 -7.699 1.059 -6.339 -8.203 3.587 -7.107 -7.655 -0.882 -7.992 -5.464 0.273 -8.066 -3.936 -6.424 ML 134 132 6 137 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 135 132 6 137 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 136 132 6 137 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 137 137 5 137 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 138 138 6 138 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 44 a u = = MP 139 138 6 143 6 2 2 24 42 -12.014 -11.953 -0.003 -10.730 -11.010 -11.405 -6.814 -5.507 -6.676 2.888 -7.435 -7.428 -0.957 -7.119 -6.924 2.385 -7.255 -3.081 1.378 -6.698 -4.687 -5.572 ML 140 138 6 143 6 1 1 23 42 -8.703 -9.050 -0.166 -3.458 -8.899 -6.429 1.844 -3.160 -2.716 -2.784 MR 141 138 6 143 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 142 138 6 143 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 143 143 5 143 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 144 144 6 144 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 43 G C = = MP 145 144 6 149 6 2 2 22 40 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.978 -6.642 -12.137 -4.103 -11.593 -7.815 -5.928 -11.653 -8.008 3.986 -8.204 -4.568 -6.293 -8.278 -8.366 -11.152 ML 146 144 6 149 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 147 144 6 149 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 148 144 6 149 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 149 149 5 149 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 150 150 6 150 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 42 G C = = MP 151 150 6 155 4 2 2 20 38 -11.189 -11.396 -0.003 -9.810 -6.358 -4.997 -6.185 2.136 -7.218 -6.785 0.483 -6.821 -6.572 3.216 -6.833 -2.627 -0.836 -6.061 -4.338 -5.139 ML 152 150 6 155 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 153 150 6 155 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 154 150 6 155 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 155 155 5 155 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 156 156 6 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - + - ML 157 156 6 159 3 1 1 17 35 -12.104 -0.001 -10.758 -7.640 1.993 -8.119 -6.648 D 158 156 6 159 3 0 0 19 37 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - + - ML 160 159 3 162 3 1 1 16 34 -12.104 -0.001 -10.758 -8.419 -7.531 -9.496 1.996 D 161 159 3 162 3 0 0 18 36 -6.174 -1.687 -0.566 IL 162 162 3 162 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - * - ML 163 162 3 165 3 1 1 15 33 -12.104 -0.001 -10.758 -8.419 -7.531 -9.496 1.996 D 164 162 3 165 3 0 0 17 35 -6.174 -1.687 -0.566 IL 165 165 3 165 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - * - ML 166 165 3 168 3 1 1 13 32 -12.104 -0.001 -10.758 -7.640 1.993 -8.119 -6.648 D 167 165 3 168 3 0 0 16 34 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - * - ML 169 168 3 171 3 1 1 12 30 -12.104 -0.001 -10.758 1.995 -8.223 -7.486 -7.616 D 170 168 3 171 3 0 0 15 33 -6.174 -1.687 -0.566 IL 171 171 3 171 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - + - ML 172 171 3 174 3 1 1 10 29 -12.104 -0.001 -10.758 1.967 -7.573 -3.668 -7.198 D 173 171 3 174 3 0 0 13 32 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - + - ML 175 174 3 177 2 1 1 1 1 * 0.000 1.995 -8.223 -7.486 -7.616 D 176 174 3 177 2 0 0 0 0 * 0.000 IL 177 177 3 177 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 178 177 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 179 66 1 180 2 0 7 45 62 -12.747 -0.000 IL 180 180 2 180 2 1 9 47 65 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 44 ] - - - - - - B 181 180 2 182 232 0 7 45 62 [ BEGL 45 ] - - - - - - S 182 181 1 183 4 0 0 30 46 -0.004 -10.162 -9.569 -10.210 [ MATP 46 ] 48 66 G A = = MP 183 182 1 187 6 2 2 30 46 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.271 -7.136 -8.246 -3.443 -8.071 -9.758 -3.746 -8.001 3.965 -3.759 -8.474 -4.481 -4.523 -9.258 -5.709 -6.933 ML 184 182 1 187 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 1 187 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 1 187 6 0 0 26 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 30 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 49 65 C G = = MP 189 188 6 193 6 2 2 28 44 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.216 -7.092 -8.134 0.119 -7.755 -9.176 3.069 -7.891 -7.903 2.668 -8.358 -4.514 -4.140 -8.819 -5.369 -6.864 ML 190 188 6 193 6 1 1 26 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 24 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 28 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 50 64 U A = = MP 195 194 6 199 6 2 2 26 42 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -8.719 -8.815 -8.171 -4.925 -6.599 -8.411 1.920 -7.477 -8.230 1.089 -8.415 -6.874 3.315 -8.637 -4.273 -7.019 ML 196 194 6 199 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 26 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 63 G C = = MP 201 200 6 205 6 2 2 24 40 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.565 -6.627 -10.653 -1.038 -10.822 -7.898 0.007 -10.544 -7.969 3.849 -8.198 -4.492 -5.976 -8.283 -7.867 -9.481 ML 202 200 6 205 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 24 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 62 c g = = MP 207 206 6 211 6 2 2 22 38 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.487 -6.201 -6.480 1.507 -5.347 -7.307 2.160 -6.004 -6.346 0.311 -6.853 -3.783 2.019 -6.668 1.670 -5.072 ML 208 206 6 211 6 1 1 20 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 6 1 1 20 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 6 211 6 0 0 18 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 22 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 21 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 53 61 c g = = MP 213 212 6 217 4 2 2 20 36 -2.434 -3.915 -0.420 -9.810 -7.764 -7.613 -7.523 1.793 -0.863 -8.040 2.593 -6.942 -7.479 0.539 -7.835 -5.336 -2.323 -7.837 2.076 -6.234 ML 214 212 6 217 4 1 1 18 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 4 1 1 18 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 216 212 6 217 4 0 0 17 34 -4.568 -4.250 -2.265 -0.520 IL 217 217 5 217 4 1 1 19 36 -1.684 -1.097 -2.185 -9.390 0.000 0.000 0.000 0.000 IR 218 218 6 218 3 1 1 14 33 -4.601 -0.070 -7.301 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - U - + - ML 219 218 6 221 3 1 1 13 32 -12.104 -0.001 -10.758 -2.680 -2.219 -0.480 1.542 D 220 218 6 221 3 0 0 16 34 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - A - + - ML 222 221 3 224 3 1 1 12 30 -12.104 -0.001 -10.758 1.516 -4.908 -1.478 -0.419 D 223 221 3 224 3 0 0 15 33 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - G - + - ML 225 224 3 227 3 1 1 10 29 -12.104 -0.001 -10.758 -0.785 -1.729 1.459 -1.435 D 226 224 3 227 3 0 0 13 32 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - C - + - ML 228 227 3 230 2 1 1 1 1 * 0.000 0.048 1.323 -5.334 -1.184 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 [ BEGR 57 ] - - - - - - S 232 181 1 233 5 0 0 26 44 -11.049 -0.002 -10.864 -11.076 -11.968 IL 233 233 2 233 5 1 1 27 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 67 81 G C = = MP 234 233 2 238 6 2 2 26 44 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -9.804 -6.642 -11.437 -0.809 -11.525 -7.873 -5.927 -11.154 -7.995 3.938 -8.212 -4.534 -6.265 -8.313 -8.332 -10.268 ML 235 233 2 238 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 236 233 2 238 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 237 233 2 238 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 238 238 5 238 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 239 239 6 239 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 68 80 U A = = MP 240 239 6 244 6 2 2 24 42 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.766 -6.336 -6.770 1.339 -5.737 -7.690 1.091 -6.323 -6.608 -0.363 -7.127 -0.990 3.298 -7.027 -3.207 -5.360 ML 241 239 6 244 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 242 239 6 244 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 243 239 6 244 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 244 244 5 244 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 245 245 6 245 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 69 79 G C = = MP 246 245 6 250 6 2 2 22 40 -12.077 -12.017 -0.003 -10.793 -11.073 -11.468 -6.230 -4.872 -6.057 -0.102 -7.099 -6.647 1.302 -6.708 -6.458 3.385 -6.715 -0.270 0.156 -5.917 -4.202 -5.012 ML 247 245 6 250 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 248 245 6 250 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 249 245 6 250 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 250 250 5 250 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 251 251 6 251 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 70 78 G C = = MP 252 251 6 256 4 2 2 20 38 -11.189 -11.396 -0.003 -9.810 -9.961 -0.524 -12.060 -4.095 -11.613 -7.821 -5.938 -11.609 -8.006 3.922 -8.205 -4.564 -6.296 -8.281 -8.377 -11.047 ML 253 251 6 256 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 254 251 6 256 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 255 251 6 256 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 256 256 5 256 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 257 257 6 257 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - U - + - ML 258 257 6 260 3 1 1 17 35 -12.104 -0.001 -10.758 -2.948 -5.443 -6.369 1.939 D 259 257 6 260 3 0 0 19 37 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 72 - U - + - ML 261 260 3 263 3 1 1 16 34 -12.104 -0.001 -10.758 -8.419 -7.531 -9.496 1.996 D 262 260 3 263 3 0 0 18 36 -6.174 -1.687 -0.566 IL 263 263 3 263 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 73 - C - + - ML 264 263 3 266 3 1 1 15 33 -12.104 -0.001 -10.758 -7.640 1.993 -8.119 -6.648 D 265 263 3 266 3 0 0 17 35 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 74 - G - + - ML 267 266 3 269 3 1 1 13 32 -12.104 -0.001 -10.758 0.830 -6.795 1.139 -6.612 D 268 266 3 269 3 0 0 16 34 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 75 - A - + - ML 270 269 3 272 3 1 1 12 30 -12.104 -0.001 -10.758 1.931 -6.699 -6.725 -2.585 D 271 269 3 272 3 0 0 15 33 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 76 - U - + - ML 273 272 3 275 3 1 1 10 29 -12.104 -0.001 -10.758 -6.273 -3.125 -7.030 1.950 D 274 272 3 275 3 0 0 13 32 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - U - + - ML 276 275 3 278 2 1 1 1 1 * 0.000 -8.419 -7.531 -9.496 1.996 D 277 275 3 278 2 0 0 0 0 * 0.000 IL 278 278 3 278 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 279 278 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME euk-SeC-050216 LENG 87 MAXL 171 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Mon May 2 18:05:24 2016 COM [1] cmbuild -F --enone --hand /projects/lowelab/users/blin/tRNAscan/models/1.6/cm/euk-SeC-050216.cm /projects/lowelab/users/blin/tRNAscan/models/1.6/alignments/euk-SeC-050216.sto NSEQ 65 EFFN 4.598083 CKSUM 667121502 STATS LOCAL MSV -8.7166 0.71869 STATS LOCAL VITERBI -9.7086 0.71869 STATS LOCAL FORWARD -3.9019 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.63336 1.36932 1.21142 1.37566 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 0.00000 * 1 2.95831 3.90140 0.09940 3.79408 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 2 3.68124 0.18118 3.51499 2.20022 2 C = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 3 1.71334 0.97082 1.52618 1.49789 3 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 4 1.88170 1.01165 1.63906 1.23827 4 c = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 5 1.79547 1.63616 0.71124 1.90926 5 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 6 1.61754 1.93512 0.77071 1.63719 6 g = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 7 1.06093 1.72036 1.37615 1.50366 7 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 8 3.07381 1.88899 2.85094 0.29472 8 U = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 9 2.92838 3.86528 0.10300 3.75358 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 10 0.06404 4.07589 3.72958 3.86068 10 A + - , 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 11 1.74928 1.91536 1.01832 1.14692 11 g + - , 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 12 2.63785 0.54738 2.43581 1.33753 12 C = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 13 2.25449 1.02144 1.86436 0.96757 13 u = - < 1.38629 1.38629 1.38629 1.38629 0.07815 2.79357 4.27042 0.40721 1.09512 1.09861 0.40547 14 1.85774 1.37209 1.76976 0.86744 15 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 15 1.75485 1.02307 1.36440 1.55095 16 c = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 16 1.31966 1.62272 1.00173 1.78279 17 g = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 17 1.76562 1.16879 1.08841 1.70690 18 g = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 18 2.74553 2.72695 2.99099 0.19829 19 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 19 3.50788 4.47429 0.06111 4.02160 20 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 20 3.50788 4.47429 0.06111 4.02160 21 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 21 2.41359 2.23111 2.50924 0.32605 22 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 22 1.84193 1.22671 1.06811 1.58682 23 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 23 1.98767 1.09623 1.49573 1.18819 24 c = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 24 1.69939 1.57918 0.95599 1.48444 25 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 25 1.84496 1.99030 0.67083 1.63974 26 G = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 26 1.31813 2.01249 0.77592 1.97740 27 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 27 1.57017 2.32711 0.50343 2.40844 28 G = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 28 1.89449 1.68344 1.61266 0.76676 29 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 29 1.80409 2.35513 0.48437 2.08420 30 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 30 1.96705 0.65084 2.07296 1.54783 31 C = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 31 1.21711 2.03915 0.94558 1.68566 32 g = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 32 3.10669 3.99074 0.08677 3.91807 33 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 33 1.46397 2.12828 0.61920 2.19580 34 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 34 3.82474 0.07805 4.34893 3.21052 35 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 35 3.41761 3.25381 3.95704 0.09490 36 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 36 3.41761 3.25381 3.95704 0.09490 37 U * - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 37 3.82474 0.07805 4.34893 3.21052 38 C * - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 38 0.06404 4.07589 3.72958 3.86068 39 A * - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 39 0.10364 3.71670 3.11524 3.51417 40 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 40 0.06404 4.07589 3.72958 3.86068 41 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 41 2.43229 0.69126 1.98520 1.29511 42 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 42 4.14394 0.09984 3.90807 2.82892 43 C = - > 1.38629 1.38629 1.38629 1.38629 0.06300 4.27042 3.05583 1.46634 0.26236 1.09861 0.40547 43 1.85238 1.02961 1.86932 1.10334 44 c = - > 1.38629 1.38629 1.38629 1.38629 0.02934 4.23675 4.23675 1.46634 0.26236 0.46604 0.98748 44 1.74979 2.23153 0.58699 1.81507 45 G = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 45 2.54469 1.90595 2.20589 0.41148 46 U = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 46 0.85576 2.03168 1.45214 1.56134 47 a = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 47 2.74311 2.64725 0.21630 2.82525 48 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 48 2.02585 1.02216 1.03848 1.86879 49 c = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 49 2.47355 1.22042 1.77373 0.79649 50 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 50 2.33990 2.62136 0.24886 2.97066 51 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 51 1.76452 1.20164 1.79443 1.01664 52 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 52 1.67052 1.09070 1.74301 1.20105 53 c = - < 1.38629 1.38629 1.38629 1.38629 0.17311 1.93114 4.27042 0.48558 0.95540 1.09861 0.40547 53 1.93004 2.10571 1.83902 0.55491 56 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 54 0.57899 2.37735 2.02473 1.53847 57 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 55 1.59823 2.20307 0.63717 1.84204 58 G + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 56 1.36896 0.77062 2.60288 1.56618 59 c + - _ 1.38629 1.38629 1.38629 1.38629 0.18150 1.88383 4.27042 0.17472 1.83068 1.09861 0.40547 57 1.68037 1.88703 0.80673 1.53312 61 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 58 1.37894 1.94410 0.90122 1.61464 62 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 59 3.20647 0.28346 2.50305 2.08351 63 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 60 0.88657 1.88497 1.11095 2.23630 64 a = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 61 2.10284 1.11809 0.94732 1.81274 65 g = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 62 0.25915 2.92068 2.46941 2.41064 66 A = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 63 2.72400 3.88990 0.11474 3.80146 67 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 64 1.80881 1.40169 1.75080 0.87627 68 u = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 65 1.88798 1.88566 0.57177 2.02217 69 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 66 2.58739 3.74503 0.13381 3.63457 70 G = - < 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 67 2.62048 2.80172 3.34927 0.18462 71 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 68 3.41761 3.25381 3.95704 0.09490 72 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 69 3.82474 0.07805 4.34893 3.21052 73 C + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 70 0.90641 2.95402 0.75876 2.58158 74 g + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 71 0.14764 3.32723 3.24005 2.77737 75 A + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 72 3.04751 2.69844 3.56773 0.15433 76 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 73 3.41761 3.25381 3.95704 0.09490 77 U + - _ 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 74 3.83033 0.13503 3.58504 2.56556 78 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 75 2.23255 0.66772 1.76025 1.57085 79 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 76 0.98326 1.96703 1.25957 1.59819 80 a = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 77 4.00090 0.13535 3.73927 2.47078 81 C = - > 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 78 3.92271 0.14625 3.70712 2.38896 82 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 79 2.59562 2.89653 1.75308 0.36105 83 U = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 80 1.74502 1.59000 1.41715 0.97014 84 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 81 1.71539 1.15715 1.69784 1.13119 85 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 82 2.16502 0.79821 1.51395 1.53674 86 c = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 83 1.64075 1.82687 0.78713 1.66021 87 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 84 1.76668 1.59881 0.87622 1.55774 88 g = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 85 2.51519 3.67620 0.14826 3.45372 89 G = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 86 3.99987 0.13638 3.76555 2.45322 90 C = - ) 1.38629 1.38629 1.38629 1.38629 0.02835 4.27042 4.27042 1.46634 0.26236 1.09861 0.40547 87 2.66725 3.93474 0.12537 3.54617 91 G + - : 1.38629 1.38629 1.38629 1.38629 0.01428 4.25634 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/models/TRNAinf-mito-vert-Phe.cm0000644000543100007160000017243712573631651021132 0ustar pchanlowelabINFERNAL1/a [1.1.1 | July 2014] NAME Phe-2nd-align STATES 289 NODES 76 CLEN 90 W 107 ALPH RNA RF yes CONS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Phe-final-vert.cm ../Phe-2nd-align.sto COM [2] cmcalibrate --seed 208 Phe-final-vert.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1089 EFFN 1089.000000 CKSUM 1527184349 NULL 0.000 0.000 0.000 0.000 EFP7GF -9.7893 0.71878 ECMLC 0.71221 -6.65035 2.02853 1600000 580292 0.002068 ECMGC 0.27408 -43.79615 -27.02360 1600000 39675 0.010082 ECMLI 0.70870 -6.06063 2.50795 1600000 520537 0.002305 ECMGI 0.28920 -38.91388 -23.11002 1600000 38633 0.010354 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 107 140 -15.017 -16.262 -0.000 -12.716 IL 1 1 2 1 4 19 39 108 141 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 40 108 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 125 - A - + MR 3 2 3 5 5 25 46 107 140 -15.066 -0.141 -14.881 -3.429 -15.985 1.988 -6.331 -5.673 -11.175 D 4 2 3 5 5 17 35 105 139 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 19 39 107 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 124 G C = = MP 6 5 3 10 6 24 46 106 139 -15.860 -15.799 -0.000 -14.576 -14.856 -15.251 -13.742 -10.419 -15.856 -2.108 -15.400 -11.597 -9.718 -15.400 -4.682 3.963 -11.982 -5.655 -3.682 -5.031 -12.159 -14.847 ML 7 5 3 10 6 18 37 104 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 22 43 103 137 -13.986 -12.715 -3.029 -12.693 -0.190 -10.907 -8.408 1.996 -8.922 -7.340 D 9 5 3 10 6 15 33 101 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 19 38 105 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 19 39 105 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 123 U A = = MP 12 11 6 16 6 23 44 104 137 -15.878 -15.817 -0.002 -14.593 -14.873 -9.948 -12.928 -13.210 -12.246 -3.131 -1.906 -12.390 2.275 -11.512 -12.350 -9.417 -12.470 -11.613 3.395 -12.763 -1.980 -11.151 ML 13 11 6 16 6 18 37 102 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 22 42 102 135 -13.801 -12.530 -8.439 -12.508 -0.006 -10.722 1.996 -8.641 -7.890 -8.013 D 15 11 6 16 6 15 33 99 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 19 38 103 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 19 38 103 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 122 U A = = MP 18 17 6 22 6 24 42 102 135 -15.876 -5.943 -0.025 -14.592 -9.912 -15.267 -1.423 -5.326 -5.643 -3.285 -1.699 -6.287 1.674 -6.102 -5.119 -3.280 -4.318 -6.928 3.211 -3.809 0.959 -1.034 ML 19 17 6 22 6 18 37 100 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 22 41 101 134 -13.801 -12.530 -0.009 -12.508 -7.642 -10.722 -7.137 -8.910 1.995 -7.899 D 21 17 6 22 6 15 32 95 129 -10.547 -9.245 -5.042 -5.724 -5.742 -0.105 IL 22 22 5 22 6 19 38 101 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 21 41 101 134 -5.938 -0.037 -9.449 -7.617 -8.722 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 120 a a = = MP 24 23 6 28 6 23 40 100 133 -6.676 -6.801 -0.046 -6.294 -14.993 -15.388 2.552 -0.258 -0.343 0.236 -0.885 -8.218 1.035 -3.772 -0.809 -1.649 -2.661 -4.197 0.967 -3.038 0.554 -5.517 ML 25 23 6 28 6 18 36 98 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 18 36 97 131 -8.167 -6.896 -2.805 -6.875 -0.309 -5.088 -0.840 1.251 -1.613 -0.444 D 27 23 6 28 6 15 32 94 128 -10.547 -9.245 -5.042 -5.724 -5.742 -0.105 IL 28 28 5 28 6 20 39 99 132 -6.208 -6.471 -0.049 -8.126 -8.902 -8.563 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 20 39 99 132 -5.281 -0.059 -8.792 -6.959 -8.065 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 118 a u = = MP 30 29 6 34 6 21 38 98 131 -15.979 -15.918 -0.000 -14.695 -14.974 -15.369 -0.693 -1.594 -2.620 2.212 -1.372 -3.080 1.185 -2.341 -2.967 1.330 -6.298 -1.974 1.957 -2.564 -2.010 -3.844 ML 31 29 6 34 6 18 35 95 128 -10.644 -10.990 -5.705 -0.035 -10.840 -8.370 1.977 -5.878 -5.290 -5.523 MR 32 29 6 34 6 17 35 96 129 -8.167 -6.896 -2.805 -6.875 -0.309 -5.088 -0.840 1.251 -1.613 -0.444 D 33 29 6 34 6 15 32 94 127 -10.547 -9.245 -5.042 -5.724 -5.742 -0.105 IL 34 34 5 34 6 18 36 97 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 18 37 97 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 117 U A = = MP 36 35 6 40 6 19 36 96 129 -5.727 -15.918 -0.028 -14.695 -14.974 -15.369 -3.968 -9.976 -5.482 -3.086 -1.782 -11.119 2.331 -9.795 -6.387 -2.748 -6.586 -4.232 3.252 -2.667 -0.881 -5.934 ML 37 35 6 40 6 17 34 94 127 -10.644 -10.990 -5.705 -0.035 -10.840 -8.370 -5.326 1.967 -5.817 -4.428 MR 38 35 6 40 6 16 34 94 128 -8.167 -6.896 -0.511 -6.875 -2.009 -5.088 -0.792 -0.921 -1.476 1.342 D 39 35 6 40 6 15 32 93 127 -10.547 -9.245 -0.564 -5.724 -5.742 -1.817 IL 40 40 5 40 6 18 35 95 128 -7.082 -7.345 -0.026 -9.000 -9.776 -9.437 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 17 35 95 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 116 G C = = MP 42 41 6 46 4 17 34 94 127 -15.204 -15.411 -0.000 -13.826 -13.766 -10.544 -15.558 -0.264 -15.475 -11.755 -9.840 -15.221 -11.902 3.916 -4.090 -6.656 -10.184 -12.204 -12.260 -14.431 ML 43 41 6 46 4 16 33 93 126 -7.751 -7.933 -0.027 -6.663 -4.954 -4.518 -5.777 1.966 MR 44 41 6 46 4 15 32 93 126 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 13 31 91 125 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 16 34 94 128 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 16 33 94 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - + - ML 48 47 6 50 3 15 32 92 125 -16.132 -0.000 -14.786 -13.418 -12.037 -14.996 2.000 D 49 47 6 50 3 13 31 90 124 -6.174 -1.687 -0.566 IL 50 50 3 50 3 15 32 93 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - + - ML 51 50 3 53 2 14 31 91 124 -16.788 -0.000 1.971 -5.539 -4.104 -10.916 D 52 50 3 53 2 13 30 90 123 -8.445 -0.004 IL 53 53 3 53 2 14 32 91 125 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 54 53 3 55 164 13 30 90 123 [ BEGL 12 ] - - - - - - S 55 54 1 56 1 1 14 58 89 0.000 [ BIF 13 ] - - - - - - B 56 55 1 57 107 1 14 58 89 [ BEGL 14 ] - - - - - - S 57 56 1 58 4 0 1 40 71 -0.000 -14.127 -13.535 -14.175 [ MATP 15 ] 12 35 G C = = MP 58 57 1 62 6 2 3 40 71 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -2.487 -10.612 -13.365 -2.025 -14.931 -4.634 -9.834 -13.357 -11.868 3.900 -12.251 -0.950 -9.998 -12.603 -11.988 -3.523 ML 59 57 1 62 6 1 1 38 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 60 57 1 62 6 1 1 38 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 61 57 1 62 6 0 0 35 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 62 62 5 62 6 1 1 40 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 63 63 6 63 5 1 1 39 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 34 C G = = MP 64 63 6 68 6 2 3 38 69 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -13.052 -13.334 -12.369 -9.571 -10.720 -12.514 3.914 -2.481 -12.473 -9.542 -12.593 -11.738 -0.834 -3.610 -3.350 -11.275 ML 65 63 6 68 6 1 1 37 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 66 63 6 68 6 1 1 36 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 67 63 6 68 6 0 0 34 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 68 68 5 68 6 1 1 38 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 69 69 6 69 5 1 1 37 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 33 U A = = MP 70 69 6 74 6 2 3 36 67 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -13.052 -13.334 -12.369 -9.571 -4.533 -12.514 -2.707 -11.635 -12.473 -9.542 -12.593 -11.738 3.978 -12.886 -4.710 -11.275 ML 71 69 6 74 6 1 1 35 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 72 69 6 74 6 1 1 34 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 73 69 6 74 6 0 0 32 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 74 74 5 74 6 1 1 36 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 75 75 6 75 5 1 1 35 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 32 U A = = MP 76 75 6 80 4 2 3 34 65 -15.223 -15.430 -0.000 -13.844 -3.044 -13.328 -12.369 -2.003 -3.596 -12.514 -4.802 -11.636 -12.472 -9.538 -12.593 -11.724 3.928 -12.886 -2.005 -4.845 ML 77 75 6 80 4 1 1 34 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 78 75 6 80 4 1 1 33 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 79 75 6 80 4 0 0 32 63 -4.568 -4.250 -2.265 -0.520 IL 80 80 5 80 4 1 1 35 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 81 81 6 81 3 1 1 34 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - + - ML 82 81 6 84 3 1 2 32 63 -16.132 -0.000 -14.786 1.941 -11.744 -2.653 -11.277 D 83 81 6 84 3 0 0 30 61 -6.174 -1.687 -0.566 IL 84 84 3 84 3 1 1 33 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - + - ML 85 84 3 87 3 1 1 31 62 -16.132 -0.380 -2.111 1.163 -0.133 -3.405 -0.407 D 86 84 3 87 3 0 0 30 60 -6.174 -1.687 -0.566 IL 87 87 3 87 3 1 1 32 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - u - + - ML 88 87 3 90 3 1 1 30 61 -15.753 -1.010 -0.990 0.291 0.207 -4.854 0.667 D 89 87 3 90 3 0 0 29 60 -15.442 -10.955 -0.001 IL 90 90 3 90 3 1 1 32 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - + - ML 91 90 3 93 3 1 1 30 60 -1.939 -2.704 -0.771 -2.067 0.184 -4.841 1.373 D 92 90 3 93 3 0 0 29 60 -16.859 -0.118 -3.669 IL 93 93 3 93 3 1 1 30 61 -2.968 -0.431 -2.939 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - A - + - ML 94 93 3 96 3 1 1 29 60 -15.645 -0.021 -6.097 1.345 -0.659 -0.862 -1.861 D 95 93 3 96 3 0 0 26 57 -15.751 -2.421 -0.298 IL 96 96 3 96 3 1 1 30 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - c - + - ML 97 96 3 99 3 1 1 28 59 -15.729 -0.645 -1.473 -0.161 0.796 -0.650 -0.448 D 98 96 3 99 3 0 0 25 56 -15.516 -4.789 -0.053 IL 99 99 3 99 3 1 1 30 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - + - ML 100 99 3 102 3 1 1 28 59 -1.490 -0.635 -13.765 -4.281 -0.125 -8.713 1.599 D 101 99 3 102 3 0 0 25 56 -3.116 -0.178 -10.965 IL 102 102 3 102 3 1 1 28 59 -0.862 -1.153 -12.587 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - + - ML 103 102 3 105 2 1 1 1 1 * 0.000 1.975 -5.934 -10.806 -4.263 D 104 102 3 105 2 0 0 0 0 * 0.000 IL 105 105 3 105 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 106 105 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 107 56 1 108 3 0 0 35 61 -16.132 -0.000 -14.786 IL 108 108 2 108 3 1 1 37 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - A - + - ML 109 108 2 111 5 1 1 35 61 -6.846 -0.013 -14.881 -15.093 -15.985 1.769 -5.453 -0.965 -4.138 D 110 108 2 111 5 0 0 35 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 111 111 3 111 5 1 1 35 61 -5.237 -0.060 -6.916 -8.748 -8.022 0.000 0.000 0.000 0.000 [ MATP 30 ] 38 56 U A = = MP 112 111 3 116 6 2 2 34 60 -16.000 -15.939 -0.055 -14.716 -4.755 -15.390 -3.270 -9.988 -5.945 1.676 -0.473 -11.126 -0.196 -9.810 -2.338 -2.674 -10.657 -6.126 3.407 -5.634 -3.570 -6.628 ML 113 111 3 116 6 1 1 32 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 114 111 3 116 6 1 1 37 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 115 111 3 116 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 116 116 5 116 6 1 1 34 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 117 117 6 117 5 1 1 34 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 39 55 g c = = MP 118 117 6 122 6 2 2 24 50 -15.945 -15.885 -0.000 -14.661 -14.941 -15.336 -11.942 -4.177 -12.119 2.820 -14.174 -14.929 -9.579 -12.193 -11.712 2.967 -12.363 -0.133 -9.549 -4.737 -11.436 -3.187 ML 119 117 6 122 6 1 1 31 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 6 122 6 1 1 36 62 -12.682 -11.411 -7.320 -11.389 -0.012 -9.603 -6.873 1.989 -7.329 -5.941 D 121 117 6 122 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 40 54 G C = = MP 124 123 6 128 6 2 2 22 47 -15.945 -15.885 -0.000 -14.661 -14.941 -15.336 -10.229 0.174 -10.072 2.636 -11.247 -10.742 -2.661 -10.715 -10.441 3.008 -10.725 -1.737 -3.285 -9.982 -8.327 -4.597 ML 125 123 6 128 6 1 1 29 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 35 61 -12.682 -0.028 -7.320 -11.389 -6.523 -9.603 -6.873 1.989 -7.329 -5.941 D 127 123 6 128 6 0 0 27 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 34 60 -1.017 -0.989 -11.657 -9.825 -10.931 0.000 0.000 0.000 0.000 [ MATP 33 ] 41 51 C G = = MP 130 129 6 134 6 2 2 19 38 -16.000 -15.939 -0.000 -14.716 -14.995 -15.390 -13.052 -13.333 -12.369 -9.570 -4.178 -12.513 3.868 -11.635 -12.473 -0.746 -12.593 -11.737 -1.029 -12.886 -1.953 -11.275 ML 131 129 6 134 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 50 A U = = MP 136 135 6 140 4 2 2 17 35 -15.223 -15.430 -0.000 -13.844 -5.078 -3.112 -12.235 3.825 -14.371 -15.514 -3.593 -1.911 -11.796 -0.198 -12.466 -1.792 -5.079 -13.535 -11.659 -2.838 ML 137 135 6 140 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 23 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 25 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - C - + - ML 142 141 6 144 3 1 1 14 33 -16.132 -0.000 -14.786 -5.430 1.921 -6.594 -2.481 D 143 141 6 144 3 0 0 19 37 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - U - + - ML 145 144 3 147 3 1 1 13 31 -16.132 -0.000 -14.786 -13.418 -12.037 -14.996 2.000 D 146 144 3 147 3 0 0 18 36 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - G - * - ML 148 147 3 150 3 1 1 12 30 -16.132 -0.000 -14.786 -4.259 -2.755 1.926 -11.191 D 149 147 3 150 3 0 0 17 35 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - A - * - ML 151 150 3 153 3 1 1 10 29 -16.132 -0.000 -14.786 1.946 -2.768 -11.343 -11.193 D 152 150 3 153 3 0 0 16 34 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - A - * - ML 154 153 3 156 3 1 1 9 28 -16.132 -0.000 -14.786 1.946 -11.773 -2.761 -11.290 D 155 153 3 156 3 0 0 15 33 -6.174 -1.687 -0.566 IL 156 156 3 156 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - G - + - ML 157 156 3 159 3 1 1 7 26 -16.132 -0.000 -14.786 0.742 -11.130 1.219 -11.002 D 158 156 3 159 3 0 0 13 32 -6.174 -1.687 -0.566 IL 159 159 3 159 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - A - + - ML 160 159 3 162 2 1 1 1 1 * 0.000 1.878 -2.383 -9.635 -2.933 D 161 159 3 162 2 0 0 0 0 * 0.000 IL 162 162 3 162 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 163 162 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 164 54 1 165 3 0 4 53 88 -16.132 -0.000 -14.786 IL 165 165 2 165 3 1 5 55 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 57 - A - + - ML 166 165 2 168 3 1 4 53 88 -16.132 -0.142 -3.415 1.811 -2.938 -2.184 -2.839 D 167 165 2 168 3 0 3 52 86 -6.174 -1.687 -0.566 IL 168 168 3 168 3 1 4 54 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - G - + - ML 169 168 3 171 2 1 3 52 87 -16.646 -0.000 -1.052 -3.931 1.760 -3.943 D 170 168 3 171 2 0 2 51 86 -12.449 -0.000 IL 171 171 3 171 2 1 4 53 87 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 46 ] - - - - - - B 172 171 3 173 229 0 2 51 86 [ BEGL 47 ] - - - - - - S 173 172 1 174 4 0 0 27 46 -3.543 -14.127 -13.535 -0.130 [ MATP 48 ] 59 77 G C = = MP 174 173 1 178 6 2 2 30 48 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -10.405 -7.054 -12.622 -4.521 -12.023 -8.224 -6.345 -12.117 -8.421 3.989 -8.616 -4.983 -6.711 -8.688 -8.788 -11.664 ML 175 173 1 178 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 1 178 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 1 178 6 0 0 19 37 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 178 178 5 178 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 60 76 A C = = MP 180 179 6 184 6 2 2 28 46 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -8.523 3.975 -8.660 -3.543 -9.721 -11.204 -5.318 -8.616 -8.260 -3.884 -8.890 -4.531 -5.715 -9.877 -7.230 -7.283 ML 181 179 6 184 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 17 35 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 184 184 5 184 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 61 75 U A = = MP 186 185 6 190 6 2 2 26 44 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -12.218 -11.918 -12.028 -10.554 -10.258 -11.941 -8.489 -11.644 -10.313 -10.588 -12.229 -11.469 3.995 -10.425 -5.675 -5.497 ML 187 185 6 190 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 15 34 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 190 190 5 190 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 62 74 G C = = MP 192 191 6 196 6 2 2 24 42 -12.492 -12.431 -0.002 -11.208 -11.487 -11.882 -10.405 -7.054 -12.622 -4.521 -12.023 -8.224 -6.345 -12.117 -8.421 3.989 -8.616 -4.983 -6.711 -8.688 -8.788 -11.664 ML 193 191 6 196 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 14 33 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 196 196 5 196 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 63 73 G C = = MP 198 197 6 202 6 2 2 22 40 -12.492 -12.431 -3.749 -11.208 -11.487 -0.113 -10.405 -7.054 -12.622 -4.521 -12.023 -8.224 -6.345 -12.117 -8.421 3.989 -8.616 -4.983 -6.711 -8.688 -8.788 -11.664 ML 199 197 6 202 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 13 32 -19.891 -18.589 -14.386 -15.068 -15.086 -0.000 IL 202 202 5 202 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 64 72 g c = = MP 204 203 6 208 6 2 2 23 41 -8.769 -8.708 -0.027 -7.485 -7.765 -8.160 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 205 203 6 208 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 12 31 -20.014 -18.712 -14.509 -15.191 -15.209 -0.000 IL 208 208 5 208 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 65 71 g c = = MP 210 209 6 214 4 2 2 20 39 -5.802 -6.009 -0.120 -4.423 -3.233 -2.540 -3.171 1.139 -2.555 -3.832 1.997 -3.003 -3.088 2.147 -3.498 -0.237 1.256 -3.465 -0.238 -2.051 ML 211 209 6 214 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 213 209 6 214 4 0 0 12 31 -15.436 -15.117 -4.331 -0.074 IL 214 214 5 214 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 215 215 6 215 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - A - + - ML 216 215 6 218 3 1 1 14 32 -11.845 -0.001 -10.499 1.994 -7.973 -7.247 -7.384 D 217 215 6 218 3 0 0 8 27 -17.476 -12.989 -0.000 IL 218 218 3 218 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - U - + - ML 219 218 3 221 3 1 1 12 30 -11.845 -0.001 -10.499 -7.992 -7.174 -9.020 1.995 D 220 218 3 221 3 0 0 7 25 -17.476 -12.989 -0.000 IL 221 221 3 221 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - G - + - ML 222 221 3 224 3 1 1 7 12 -1.247 -0.791 -10.499 0.683 -6.421 1.244 -6.185 D 223 221 3 224 3 0 0 3 8 -17.476 -12.989 -0.000 IL 224 224 3 224 3 1 1 6 11 -5.387 -0.040 -8.087 0.000 0.000 0.000 0.000 [ MATL 58 ] 70 - G - + - ML 225 224 3 227 2 1 1 1 1 * 0.000 0.827 -6.481 1.139 -6.283 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 [ BEGR 60 ] - - - - - - S 229 172 1 230 3 0 2 41 77 -16.132 -0.123 -3.614 IL 230 230 2 230 3 1 3 43 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 78 - A - + - ML 231 230 2 233 3 1 4 41 77 -4.778 -0.054 -14.664 1.960 -11.071 -4.105 -4.331 D 232 230 2 233 3 0 1 40 76 -13.943 -0.005 -8.335 IL 233 233 3 233 3 1 2 41 77 -5.987 -0.026 -8.687 0.000 0.000 0.000 0.000 [ MATL 62 ] 80 - U - + - ML 234 233 3 236 5 1 4 40 76 -15.066 -0.000 -14.881 -15.093 -15.985 -3.597 0.230 -6.093 1.449 D 235 233 3 236 5 0 0 39 74 -4.959 -0.803 -4.221 -2.596 -2.508 IL 236 236 3 236 5 1 1 41 76 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 81 115 G C = = MP 237 236 3 241 6 2 4 39 75 -16.000 -4.476 -0.211 -3.460 -14.995 -15.390 -13.474 -4.727 -14.625 0.490 -15.330 -11.917 -9.856 -14.479 -11.907 3.808 -12.161 -0.860 -10.150 -12.313 -12.202 -13.344 ML 238 236 3 241 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 37 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 35 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 39 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 2 38 74 -2.551 -0.274 -11.216 -9.384 -10.490 0.000 0.000 0.000 0.000 [ MATP 64 ] 82 112 G C = = MP 243 242 6 247 6 2 4 37 72 -15.863 -15.802 -0.090 -4.487 -5.985 -15.253 -10.260 -0.957 -10.111 1.964 -11.275 -1.430 -6.344 -10.756 -2.702 3.320 -10.707 -0.135 -6.603 -5.810 -8.352 -3.148 ML 244 242 6 247 6 1 2 39 75 -13.424 -13.770 -8.485 -0.005 -13.620 -11.150 -8.377 1.996 -8.890 -7.312 MR 245 242 6 247 6 1 1 35 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 246 242 6 247 6 0 0 34 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 247 247 5 247 6 1 1 37 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 248 248 6 248 5 1 1 36 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 83 111 g c = = MP 249 248 6 253 6 2 2 35 70 -4.896 -2.687 -0.362 -6.065 -6.778 -6.794 -9.729 -1.905 -9.551 2.174 -4.188 -1.808 0.160 -4.906 -9.985 2.948 -7.089 -1.362 0.524 -2.914 -5.838 -5.302 ML 250 248 6 253 6 1 2 38 74 -13.954 -14.300 -3.788 -0.109 -14.149 -11.679 1.612 -0.649 -6.435 -1.770 MR 251 248 6 253 6 1 2 31 64 -11.356 -10.085 -2.955 -10.064 -0.208 -8.277 1.774 -1.275 -3.760 -3.418 D 252 248 6 253 6 0 0 32 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 253 253 5 253 6 1 2 37 73 -7.685 -2.913 -1.987 -0.717 -10.380 -10.040 0.000 0.000 0.000 0.000 IR 254 254 6 254 5 1 1 33 67 -1.582 -1.568 -7.490 -2.575 -2.686 0.000 0.000 0.000 0.000 [ MATP 66 ] 85 107 c g = = MP 255 254 6 259 6 2 2 31 66 -15.588 -15.527 -0.371 -6.112 -4.221 -2.654 -2.477 -1.098 -9.607 0.601 -1.499 -5.379 2.913 -2.253 -4.554 -0.745 -10.029 -7.074 2.195 -9.781 -1.050 -8.301 ML 256 254 6 259 6 1 1 37 73 -14.180 -14.527 -9.241 -0.179 -14.376 -3.120 -0.735 1.751 -5.247 -6.962 MR 257 254 6 259 6 1 1 29 61 -13.244 -2.207 -7.882 -11.951 -0.513 -3.678 1.466 -4.660 -1.897 -0.106 D 258 254 6 259 6 0 0 27 59 -15.387 -14.086 -9.883 -10.565 -1.920 -0.446 IL 259 259 5 259 6 1 1 32 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 2 30 61 -5.660 -0.045 -9.172 -7.339 -8.445 0.000 0.000 0.000 0.000 [ MATP 67 ] 86 105 c a = = MP 261 260 6 265 4 2 2 28 57 -14.464 -5.606 -0.304 -2.562 -1.355 -2.551 -6.647 1.129 2.821 -0.874 1.198 -4.337 -4.026 0.646 -7.287 -2.669 0.205 -3.272 -2.524 -3.898 ML 262 260 6 265 4 1 1 36 72 -2.421 -11.382 -0.325 -6.111 -2.895 1.902 -7.718 -3.015 MR 263 260 6 265 4 1 1 28 59 -11.964 -1.808 -1.680 -1.314 1.134 0.784 -4.061 -5.421 D 264 260 6 265 4 0 0 26 57 -12.897 -12.579 -1.482 -0.640 IL 265 265 5 265 4 1 2 39 74 -0.745 -8.934 -1.318 -11.419 0.000 0.000 0.000 0.000 IR 266 266 6 266 3 1 2 28 55 -1.947 -0.436 -9.273 0.000 0.000 0.000 0.000 [ MATL 68 ] 90 - c - + - ML 267 266 6 269 3 1 2 26 53 -5.114 -0.042 -14.375 0.397 0.621 -2.248 -0.097 D 268 266 6 269 3 0 0 25 52 -15.542 -0.131 -3.530 IL 269 269 3 269 3 1 1 27 54 -1.671 -0.549 -8.605 0.000 0.000 0.000 0.000 [ MATL 69 ] 93 - U - + - ML 270 269 3 272 3 1 1 25 52 -16.101 -0.003 -9.024 -2.196 -1.751 -1.036 1.583 D 271 269 3 272 3 0 0 24 51 -12.020 -0.401 -2.044 IL 272 272 3 272 3 1 1 27 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 94 - a - + - ML 273 272 3 275 3 1 1 24 51 -16.123 -0.006 -7.948 0.983 0.336 -0.738 -2.632 D 274 272 3 275 3 0 0 23 50 -10.436 -0.053 -4.828 IL 275 275 3 275 3 1 1 26 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 95 - a - + - ML 276 275 3 278 3 1 1 23 50 -6.959 -0.162 -3.344 0.760 -0.973 0.474 -1.295 D 277 275 3 278 3 0 0 23 50 -0.128 -5.224 -4.102 IL 278 278 3 278 3 1 1 24 50 -4.612 -0.070 -7.312 0.000 0.000 0.000 0.000 [ MATL 72 ] 97 - A - + - ML 279 278 3 281 3 1 1 22 49 -15.984 -0.237 -2.721 1.300 -0.591 -3.241 -0.381 D 280 278 3 281 3 0 0 12 39 -14.206 -9.719 -0.002 IL 281 281 3 281 3 1 1 24 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 98 - A - + - ML 282 281 3 284 3 1 1 22 48 -3.756 -1.182 -1.044 1.613 -1.576 -2.647 -1.164 D 283 281 3 284 3 0 0 9 36 -15.463 -8.494 -0.004 IL 284 284 3 284 3 1 1 24 51 -1.000 -1.692 -2.391 0.000 0.000 0.000 0.000 [ MATL 74 ] 102 - c - + - ML 285 284 3 287 2 1 1 1 1 * 0.000 0.067 0.739 -4.718 0.317 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME Phe-2nd-align LENG 90 MAXL 162 ALPH RNA RF yes MM no CONS yes CS yes MAP yes DATE Fri Jun 26 17:13:57 2015 COM [1] cmbuild --hand --enone Phe-final-vert.cm ../Phe-2nd-align.sto NSEQ 1089 EFFN 7.797443 CKSUM 1527184349 STATS LOCAL MSV -8.8831 0.71878 STATS LOCAL VITERBI -9.6973 0.71878 STATS LOCAL FORWARD -3.4951 0.71878 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15063 1.52509 1.46259 1.45104 1.38629 1.38629 1.38629 1.38629 0.09719 4.73342 2.47904 1.46634 0.26236 0.00000 * 1 2.97618 3.98142 0.09805 3.74012 1 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01920 4.65543 4.65543 1.46634 0.26236 1.73603 0.19385 2 2.94018 1.07463 2.79233 0.60799 2 U = - ( 1.38629 1.38629 1.38629 1.38629 0.01982 4.66519 4.58481 1.46634 0.26236 2.35115 0.10011 3 1.86449 1.39017 1.86380 0.81892 3 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01985 4.66440 4.58272 1.46634 0.26236 0.21930 1.62495 4 1.14170 1.51768 1.71217 1.26929 4 a = - ( 1.38629 1.38629 1.38629 1.38629 0.02588 4.09016 4.73193 0.84736 0.55957 1.15336 0.37918 5 1.31954 1.49464 1.54374 1.22135 6 u = - ( 1.38629 1.38629 1.38629 1.38629 0.01778 4.73193 4.73193 1.46634 0.26236 1.15336 0.37918 6 2.23471 1.13898 2.06352 0.80783 7 u = - ( 1.38629 1.38629 1.38629 1.38629 0.03328 3.73298 4.73193 0.62260 0.76905 0.99737 0.46021 7 2.68593 4.08870 0.11056 3.92478 9 G = - ( 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 8 4.07623 3.83616 4.62693 0.04954 10 U + - , 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 9 0.07097 3.97239 3.48939 3.95499 11 A + - , 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 10 2.00807 2.77260 0.31527 2.60828 12 G = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 11 3.79765 0.15146 3.58814 2.40272 13 C = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 12 4.87631 3.23164 4.81607 0.05680 14 U = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 13 4.62246 3.96182 4.71712 0.03853 15 U = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 14 0.08980 4.06243 3.01987 3.91860 16 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 15 0.77214 1.55157 2.38538 1.45241 17 a + - _ 1.38629 1.38629 1.38629 1.38629 0.22889 4.73342 1.63074 1.46634 0.26236 1.09861 0.40547 16 1.23860 1.35337 2.38534 1.02225 18 u + - _ 1.38629 1.38629 1.38629 1.38629 0.52114 4.52641 0.92801 1.46634 0.26236 3.18872 0.04210 17 1.78630 1.41178 2.40025 0.69712 19 u + - _ 1.38629 1.38629 1.38629 1.38629 0.79065 1.78346 0.97182 0.24181 1.53806 0.11404 2.22768 18 0.69019 1.80320 1.85063 1.73382 22 A + - _ 1.38629 1.38629 1.38629 1.38629 0.04998 4.48541 3.28399 1.46634 0.26236 1.55359 0.23761 19 1.34977 1.14758 1.78721 1.36309 23 c + - _ 1.38629 1.38629 1.38629 1.38629 0.30104 4.51419 1.39031 1.46634 0.26236 1.87662 0.16618 20 2.21235 1.55906 2.78943 0.48003 24 U + - _ 1.38629 1.38629 1.38629 1.38629 0.35436 1.25676 4.28296 0.80059 0.59614 0.04627 3.09622 21 0.06406 4.00522 3.95139 3.70483 31 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 22 0.04461 4.87853 3.72664 4.42692 32 A = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 23 0.06583 4.94295 3.07151 4.58297 33 A = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 24 2.66482 3.64008 0.13945 3.37256 34 G = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 25 2.82047 0.38339 2.59239 1.69265 35 C = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 26 0.25612 3.22973 2.01678 2.93185 36 A + - , 1.38629 1.38629 1.38629 1.38629 0.02490 4.14770 4.73342 0.88887 0.52953 1.09861 0.40547 27 1.61448 1.53753 1.92628 0.82006 38 u = - < 1.38629 1.38629 1.38629 1.38629 0.04881 4.73342 3.24838 1.46634 0.26236 1.09861 0.40547 28 1.15719 2.78850 0.60081 2.58031 39 G = - < 1.38629 1.38629 1.38629 1.38629 0.01830 4.70292 4.70292 1.46634 0.26236 1.85866 0.16946 29 1.13736 2.71519 0.62216 2.57228 40 G = - < 1.38629 1.38629 1.38629 1.38629 0.01830 4.70292 4.70292 1.46634 0.26236 0.37362 1.16552 30 3.54980 0.23661 2.79257 2.11437 41 C = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 31 0.11629 3.80585 2.74479 3.76005 42 A = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 32 3.51424 0.12270 4.05322 2.68329 43 C + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 33 4.07623 3.83616 4.62693 0.04954 44 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 34 2.98096 3.24565 0.12594 3.55279 45 G * - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 35 0.09582 3.21680 3.70170 3.62662 46 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 36 0.08592 4.08784 3.07498 3.94438 47 A * - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 37 0.90200 3.51488 0.64711 3.19575 48 G + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 38 0.17965 2.73144 3.34501 2.74807 49 A + - _ 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 39 3.99930 2.93651 3.77221 0.09914 50 U = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 40 2.38467 2.87421 0.20608 3.27939 51 G = - > 1.38629 1.38629 1.38629 1.38629 0.04881 3.24838 4.73342 0.85385 0.55473 1.09861 0.40547 41 2.81403 0.64796 2.52758 1.08746 54 C = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 42 2.85202 0.71348 2.58350 0.97597 55 c = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 43 0.86469 2.12266 1.43779 1.50664 56 a = - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 44 0.25259 2.72622 2.53774 2.54206 57 A + - , 1.38629 1.38629 1.38629 1.38629 0.09796 4.73342 2.47078 1.46634 0.26236 1.09861 0.40547 45 1.91764 3.04914 0.29736 2.76672 58 G + - , 1.38629 1.38629 1.38629 1.38629 1.65894 4.65467 0.22297 1.46634 0.26236 0.31194 1.31687 46 1.97521 2.13739 0.47296 2.11900 59 G = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 47 1.16933 1.84299 1.02277 1.76328 60 g = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 48 2.11124 1.34172 1.69917 0.83314 61 u = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 49 1.96434 2.13226 0.47832 2.10899 62 G = - < 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 50 1.96377 2.13200 0.47861 2.10846 63 G = - < 1.38629 1.38629 1.38629 1.38629 0.38858 3.38431 1.24452 1.46634 0.26236 4.46804 0.01154 51 1.79933 1.30706 1.07866 1.49644 64 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.55054 0.01062 52 1.79943 1.30703 1.07862 1.49646 65 g = - < 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.83732 0.06037 53 0.62677 2.05886 1.88316 1.68212 66 A + - _ 1.38629 1.38629 1.38629 1.38629 0.07833 3.27891 3.27891 1.46634 0.26236 4.50133 0.01116 54 1.55106 1.75129 1.98466 0.74024 67 u + - _ 1.38629 1.38629 1.38629 1.38629 0.07833 3.27891 3.27891 1.46634 0.26236 4.50133 0.01116 55 1.08905 1.95387 1.17103 1.55263 68 a + - _ 1.38629 1.38629 1.38629 1.38629 0.16243 2.18702 3.27891 0.57393 0.82853 4.50133 0.01116 56 1.05960 1.94897 1.20933 1.54840 70 a + - _ 1.38629 1.38629 1.38629 1.38629 0.28318 3.27891 1.56569 1.46634 0.26236 4.50133 0.01116 57 1.73068 1.22003 1.16195 1.53834 71 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 4.55054 0.01062 58 1.73055 1.22008 1.16200 1.53830 72 g = - > 1.38629 1.38629 1.38629 1.38629 0.09531 3.09104 3.09104 1.46634 0.26236 2.41075 0.09403 59 2.32988 0.55076 1.95874 1.68663 73 C = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 60 2.33038 0.55061 1.95886 1.68672 74 C = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 61 0.96249 1.86089 1.17740 1.86793 75 a = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 62 1.98644 0.86323 1.65717 1.38492 76 c = - > 1.38629 1.38629 1.38629 1.38629 0.07021 3.38431 3.38431 1.46634 0.26236 4.46804 0.01154 63 2.33913 0.54810 1.96095 1.68838 77 C = - > 1.38629 1.38629 1.38629 1.38629 0.38858 3.38431 1.24452 1.46634 0.26236 0.02321 3.77489 64 0.08453 3.90845 3.41383 3.57312 78 A + - , 1.38629 1.38629 1.38629 1.38629 0.04895 3.26097 4.66519 0.43477 1.04246 0.21136 1.65800 65 2.50292 1.34699 3.16243 0.48482 80 U + - , 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 66 2.26049 3.77930 0.16660 3.63729 81 G = - < 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 67 1.45862 2.27861 0.55832 2.37678 82 G = - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.73342 3.89094 1.46634 0.26236 1.09861 0.40547 68 1.35920 1.98592 0.81177 1.82134 83 g = - < 1.38629 1.38629 1.38629 1.38629 0.11516 3.42782 2.57283 0.47993 0.96450 1.31756 0.31168 69 1.67644 1.07095 1.80423 1.18522 85 c = - < 1.38629 1.38629 1.38629 1.38629 0.19243 4.65342 1.79868 1.46634 0.26236 1.71530 0.19834 70 1.56418 1.09026 1.62162 1.35854 86 c = - < 1.38629 1.38629 1.38629 1.38629 0.16853 3.23205 2.15747 1.04666 0.43249 0.84558 0.56090 71 1.17932 1.20661 2.15218 1.28348 90 a + - _ 1.38629 1.38629 1.38629 1.38629 0.04492 3.41337 4.50983 0.75092 0.63853 0.16642 1.87529 72 2.07758 2.15099 2.11216 0.45032 93 U + - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.71610 4.55962 1.46634 0.26236 0.68614 0.70021 73 0.84984 1.38444 1.81496 1.83753 94 a + - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72788 4.72788 1.46634 0.26236 0.80137 0.59550 74 0.99403 1.88692 1.25280 1.64675 95 a + - _ 1.38629 1.38629 1.38629 1.38629 0.10896 4.18310 2.43061 0.91608 0.51097 1.09861 0.40547 75 0.69801 1.74266 2.35039 1.46084 97 a + - _ 1.38629 1.38629 1.38629 1.38629 0.14979 4.65092 2.04361 1.46634 0.26236 2.48509 0.08699 76 0.47981 2.11901 2.36790 1.78814 98 A + - _ 1.38629 1.38629 1.38629 1.38629 0.59013 2.73582 0.96520 0.68253 0.70388 3.15328 0.04365 77 1.31315 1.20572 2.20257 1.13621 102 u + - _ 1.38629 1.38629 1.38629 1.38629 0.48721 2.56154 1.17610 0.57859 0.82254 0.28158 1.40481 78 1.17688 1.67237 1.32835 1.43110 105 a = - > 1.38629 1.38629 1.38629 1.38629 0.03758 3.68769 4.43539 0.77386 0.61846 0.73438 0.65355 79 1.30042 1.88604 0.99599 1.57720 107 g = - > 1.38629 1.38629 1.38629 1.38629 0.14522 2.15089 3.97437 0.50853 0.91975 1.36687 0.29424 80 2.02513 0.83535 1.89047 1.26126 111 c = - > 1.38629 1.38629 1.38629 1.38629 0.01989 4.62066 4.62066 1.46634 0.26236 1.16013 0.37607 81 2.67931 0.58778 2.43916 1.24273 112 C = - > 1.38629 1.38629 1.38629 1.38629 0.06014 3.01861 4.65683 0.47036 0.98024 0.19324 1.73889 82 3.82694 0.21163 3.58732 1.95694 115 C = - > 1.38629 1.38629 1.38629 1.38629 0.02828 4.73342 3.95852 1.46634 0.26236 1.09861 0.40547 83 4.13282 0.12818 3.85273 2.48835 116 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01869 4.72307 4.64269 1.46634 0.26236 1.42800 0.27416 84 0.91743 2.20899 1.02050 2.03845 117 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01795 4.72232 4.72232 1.46634 0.26236 1.44787 0.26797 85 1.32734 1.64288 1.34637 1.26865 118 u = - ) 1.38629 1.38629 1.38629 1.38629 0.02544 4.12099 4.72232 0.87711 0.53783 0.67298 0.71373 86 1.08951 1.83427 1.23225 1.54998 120 a = - ) 1.38629 1.38629 1.38629 1.38629 0.03017 3.86743 4.73268 0.69930 0.68703 1.12613 0.39198 87 1.03085 2.04013 1.10085 1.71093 122 a = - ) 1.38629 1.38629 1.38629 1.38629 0.01776 4.73268 4.73268 1.46634 0.26236 1.04575 0.43298 88 0.64642 2.92494 1.04163 2.66592 123 A = - ) 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 89 3.50796 0.14332 3.62544 2.56490 124 C = - ) 1.38629 1.38629 1.38629 1.38629 0.01775 4.73342 4.73342 1.46634 0.26236 1.09861 0.40547 90 0.04863 4.31339 3.92180 4.24907 125 A + - : 1.38629 1.38629 1.38629 1.38629 0.00891 4.72458 * 1.46634 0.26236 0.00000 * // tRNAscan-SE-2.0/lib/tRNAscanSE/0000755000543100007160000000000013546740313015307 5ustar pchanlowelabtRNAscan-SE-2.0/lib/tRNAscanSE/LogFile.pm0000644000543100007160000000744613060145675017202 0ustar pchanlowelab# tRNAscanSE/LogFile.pm # This class defines the log file used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::LogFile; use strict; use POSIX 'strftime'; sub new { my $class = shift; my $log_name = shift; my $self = { file_name => $log_name, FILE_H => undef, log_file => 0 }; if ($log_name ne "") { $self->{log_file} = 1; } $self->{process_id} = $$; $self->{quiet_mode} = 0; bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub quiet_mode { my $self = shift; if (@_) { $self->{quiet_mode} = shift; } return $self->{quiet_mode}; } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub open_file { my $self = shift; my $file = shift; my $success = 0; if (($file eq "-") || ($file eq "/dev/null")) { $success = open($self->{FILE_H}, ">$file"); $self->{file_name} = $file; } else { open($self->{FILE_H}, ">$file") || die "Unable to open $file for writing. Aborting program.\n"; $|=1; $self->{file_name} = $file; $success = 1; } return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } sub write_line { my $self = shift; my $line = shift; my $fh = $self->{FILE_H}; print $fh $line . "\n"; } sub initialize_log { my $self = shift; my $app = shift; my $log_dir = shift; my $cmd = shift; if ($self->{log_file}) { my $time_str = strftime('%Y%m%d-%H:%M:%S', localtime); my $file = $log_dir."/$app-$time_str-".$self->{process_id}.".log"; if ($self->{file_name} ne "default") { $file = $self->{file_name}; } if (open_file($self, $file)) { write_line($self, "Application: $app"); write_line($self, "User: ".getlogin); write_line($self, "Host: ".`hostname`); write_line($self, "Start Time: ".localtime); write_line($self, ""); if ($cmd ne "") { write_line($self, "Command: $cmd"); write_line($self, ""); } } } } sub finish_process() { my $self = shift; if ($self->{log_file}) { write_line($self, ""); write_line($self, "End Time: ".localtime); close_file($self); } } sub command { my $self = shift; my $line = shift; if ($self->{log_file}) { write_line($self, "Command: ".$line); } } sub broadcast { my $self = shift; my $line = shift; if ($self->{log_file}) { write_line($self, $line); } } sub status { my $self = shift; my $line = shift; if ($self->{log_file}) { write_line($self, "Status: ".$line); } if (!$self->{quiet_mode}) { print "Status: ".$line."\n"; } } sub error { my $self = shift; my $line = shift; if ($self->{log_file}) { write_line($self, "Error: ".$line); } if (!$self->{quiet_mode}) { print "Error: ".$line."\n"; } } sub warning { my $self = shift; my $line = shift; if ($self->{log_file}) { write_line($self, "Warning: ".$line); } if (!$self->{quiet_mode}) { print "Warning: ".$line."\n"; } } sub debug { my $self = shift; my $line = shift; if ($self->{log_file}) { write_line($self, "Debug: ".$line); } } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/Tscan.pm0000644000543100007160000003005713053260512016711 0ustar pchanlowelab# tRNAscanSE/Tscan.pm # This class contains parameters and functions for running tRNAscan used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::Tscan; use strict; use tRNAscanSE::Configuration; use tRNAscanSE::Utils; use tRNAscanSE::ArraytRNA; use tRNAscanSE::tRNA; use tRNAscanSE::GeneticCode; use tRNAscanSE::Stats; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; # set to non-zero if you do NOT want redundant, overlapping hits # found by tRNAscan merged into one hit $self->{keep_tscan_repeats} = 0; $self->{tscan_version} = 1.4; # version of tRNAscan used by tRNAscan-SE $self->{tscan_bin} = "trnascan-1.4"; $self->{tscan_mask} = 1; # Bit-wise masks for source of tRNA hits } sub set_defaults { my $self = shift; my $global_vars = shift; my $global_constants = $global_vars->{global_constants}; $self->{tscan_params} = $global_constants->get_subvalue("tscan", "strict_param"); } sub keep_tscan_repeats { my $self = shift; if (@_) { $self->{keep_tscan_repeats} = shift; } return $self->{keep_tscan_repeats}; } sub tscan_params { my $self = shift; if (@_) { $self->{tscan_params} = shift; } return $self->{tscan_params}; } sub tscan_version { my $self = shift; if (@_) { $self->{tscan_version} = shift; } return $self->{tscan_version}; } sub tscan_bin { my $self = shift; if (@_) { $self->{tscan_bin} = shift; } return $self->{tscan_bin}; } sub tscan_mask { my $self = shift; return $self->{tscan_mask}; } sub set_bin { my $self = shift; my $bindir = shift; # choose correct name for version being run # only version 1.4 is provided with distribution if ($self->{tscan_version} == 1.4) { $self->{tscan_bin} = "trnascan-1.4"; } elsif ($self->{tscan_version} == 1.39) { $self->{tscan_bin} = "trnascan-1.39"; } elsif ($self->{tscan_version} == 2) { $self->{tscan_bin} = "TRNAscan"; } elsif ($self->{tscan_version} == 1.3) { $self->{tscan_bin} = "trnascan-1.3"; } else { die "FATAL: Illegal tRNAscan version.\n\n"; } if ($^O =~ /^MSWin/) { $self->{tscan_bin} .= ".exe"; } if (!(-x $self->{tscan_bin})) { $self->{tscan_bin} = $bindir."/".$self->{tscan_bin}; if (!(-x $self->{tscan_bin})) { die "FATAL: Unable to find ".$self->{tscan_bin}." executable\n\n"; } } } sub run_tRNAscan { my $self = shift; my ($tmp_fa, $tmp_raw, $start_index, $lib_dir, $seq_name) = @_; my $tscan_version = $self->{tscan_version}; my $tscan_bin = $self->{tscan_bin}; my $tscan_params = $self->{tscan_params}; # version provided with distribution if ($tscan_version == 1.4) { # run default tRNAscan 1.4 using selected param set system ("$tscan_bin -i $start_index -c $tscan_params $tmp_fa > $tmp_raw"); if (&error_exit_status("tRNAscan", $seq_name)) { return -1; } } # run tRNAscan without conservative ambiguous base pairing rules # not available in distribution version elsif ($tscan_version == 1.39) { system ("$tscan_bin -c $tscan_params $tmp_fa > $tmp_raw"); } # run tRNAscan v2.0, not available in distribution version elsif ($tscan_version == 2) { system ("$tscan_bin -SEQ $tmp_fa -TEMPLATE SEtemplate -OUTPUT $tmp_raw > /dev/null"); } # run original tRNAscan 1.3, not available in distribution version elsif ($tscan_version == 1.3) { if (!(-r "./TPCsignal")) { system ("ln -s ".$lib_dir."TPCsignal TPCsignal"); } if (!(-r "./Dsignal")) { system ("ln -s ".$lib_dir."Dsignal Dsignal"); } system ("reformat -ld genbank $tmp_fa > tmp.gb"); system ("$tscan_bin tmp.gb $tmp_raw > /dev/null"); system ("rm tmp.gb"); } else { die "FATAL: Illegal tRNAscan version.\n\n"; } } # Append tRNAscan verbose output to # result file with header tag sub append_verbfile { my $self = shift; my ($verb_file, $tmp_fa, $seq_name) = @_; &open_for_append(\*TSCANVERB, $verb_file); print TSCANVERB "\n>>>> tRNA-Scan verbose output for <$seq_name>\n\n"; close TSCANVERB; system ("cat tscan.verb.out >> $verb_file"); } # extract trna hits from raw result file while weeding out repeated hits # save non-redundant hits in "hit_list" array sub process_tRNAscan_hits { my $self = shift; my ($global_vars, $seq_name) = @_; my $global_constants = $global_vars->{global_constants}; my $gc = $global_vars->{gc}; my $fp_tRNAs = $global_vars->{fp_tRNAs}; my $stats = $global_vars->{stats}; my $tmp_raw = $global_constants->get("tmp_raw"); my $trna = tRNAscanSE::tRNA->new; my $i = 0; # open trnascan raw output file for current seq open (TSCANRAW, "$tmp_raw") || die ("FATAL: Unable to open temp raw output file $tmp_raw\n\n"); # parse one complete hit per call while ($self->parse_tscan_hit($global_constants, $gc, \*TSCANRAW, $trna)) { # if NOT a repeat hit, put it on the hit list if ($self->{keep_tscan_repeats} || (!$self->merge_repeat_hit($global_vars->{stats}, $global_vars->{fp_tRNAs}, $trna))) { # check to see if tscan 1.3 has incorrectly reported # start/end index (happens occassionally) if ((abs($trna->end() - $trna->start()) + 1) != length($trna->seq())) { if ($trna->strand() eq "+") { $trna->end() = $trna->start() + length($trna->seq()) - 1; } else { $trna->end() = $trna->start() - length($trna->seq()) + 1; } } $i = 0; while (($i < $fp_tRNAs->get_count()) && ($fp_tRNAs->get($i)->position() < $trna->position())) { $i++; } $trna->seqname($seq_name); $trna->hit_source($self->{tscan_mask}); $fp_tRNAs->insert($trna, $i); $stats->increment_trnatotal(); } $trna = tRNAscanSE::tRNA->new; } # while (&Parse_tscan_hit), more hits to process for cur seq } sub parse_tscan_hit { my $self = shift; my ($global_constants, $gc, $TSCANRAW, $trna) = @_; if ($self->{tscan_version} <= 1.4) { while (<$TSCANRAW>) { if (/^start position=\s*(\d+)\s*end position=\s*(\d+)/o) { $trna->start($1); $trna->end($2); if ($trna->start() < $trna->end()) { $trna->strand("+"); $trna->position($trna->start()); } else { $trna->strand("-"); $trna->position($global_constants->get("really_big_number") - $trna->start() + 1); } } elsif (/^potential tRNA sequence=\s(.+)\n/o) { $trna->seq($1); } elsif (/^tRNA predict as a tRNA-\s*(\S+)\s*: anticodon (\S+)/o) { $trna->isotype($1); $trna->anticodon($2); } elsif (/^anticodon includes unknown bases/o) { $trna->isotype($gc->undef_isotype()); $trna->anticodon($gc->undef_anticodon()); } elsif (/^potential intron between positions\s*(\d+)\s*(\d+)/o) { $trna->add_intron($1, $2, $1, $2, "CI"); } # flag for end of current tRNA hit info elsif (/^number of base pairing in the anticodon/o) { return 1; } elsif (/^number of predicted tRNA=(\d+)/o) { return 0; # end of hits for this seq } } return 0; # reached end of raw hits file } else { die "FATAL: Illegal tRNAscan version selected.\n\n"; } } # check current hit for redundancy against all previous hits in hitlist # if it IS a repeat, merge it with overlapping hit and return 1 # if it doesn't overlap with any hits, return 0 sub merge_repeat_hit { my $self = shift; my ($stats, $fp_tRNAs, $trna) = @_; for (my $i = 0; $i < $fp_tRNAs->get_count(); $i++) { if ($trna->strand() eq "+") { if (($fp_tRNAs->get($i)->strand() eq "+") && (&seg_overlap($trna->start(), $trna->end(), $fp_tRNAs->get($i)->start(), $fp_tRNAs->get($i)->end()))) { $fp_tRNAs->get($i)->start(&min($trna->start(), $fp_tRNAs->get($i)->start())); $fp_tRNAs->get($i)->end(&max($trna->end(), $fp_tRNAs->get($i)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $self->{tscan_mask}); $fp_tRNAs->get($i)->isotype($trna->isotype()); $fp_tRNAs->get($i)->score($trna->score()); # check to see if extended endpoint overlaps i+1 hit's start boundary # if so, combine hit[i] and hit[i+1] into one hit and delete hit[i+1] if (($i != ($fp_tRNAs->get_count() - 1)) and ($fp_tRNAs->get($i+1)->strand() eq "+") and ($fp_tRNAs->get($i)->end() >= $fp_tRNAs->get($i+1)->start())) { $fp_tRNAs->get($i)->end(&max($fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i+1)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $fp_tRNAs->get($i+1)->hit_source()); # splice(@$r_hit_list,$i+1,1); # toss out overlapping hit $fp_tRNAs->remove($i+1); # $$r_trnact--; $stats->decrement_trnatotal(); } return 1; # exit loop immediately } } else # else (antisense) strand { if (($fp_tRNAs->get($i)->strand() eq "-") && (&seg_overlap($trna->end(), $trna->start(), $fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i)->start()))) { $fp_tRNAs->get($i)->start(&max($trna->start(), $fp_tRNAs->get($i)->start())); $fp_tRNAs->get($i)->end(&min($trna->end(), $fp_tRNAs->get($i)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $self->{tscan_mask}); $fp_tRNAs->get($i)->isotype($trna->isotype()); $fp_tRNAs->get($i)->score($trna->score()); if (($i != ($fp_tRNAs->get_count() - 1)) and ($fp_tRNAs->get($i)->end() <= $fp_tRNAs->get($i+1)->start())) { $fp_tRNAs->get($i)->end(&min($fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i+1)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $fp_tRNAs->get($i+1)->hit_source()); # splice(@$r_hit_list,$i+1,1); # toss out overlapping hit $fp_tRNAs->remove($i+1); # $$r_trnact--; $stats->decrement_trnatotal(); } return 1; # exit loop immediately } } # else (antisense) strand } # for each (hit) return 0; # current hit is not a repeat } 1;tRNAscan-SE-2.0/lib/tRNAscanSE/Sequence.pm0000644000543100007160000006311113546740242017420 0ustar pchanlowelab# tRNAscanSE/Sequence.pm # This class describes a sequence and provides functions for handling fasta files in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # # Perl code for reading FASTA-formatted sequence files # SRE, Sat Feb 19 19:10:43 1994 # These subroutines read a FASTA formatted file one sequence at a time. # Open(filename, open_mode) opens a file for reading or wrting. # Close() closes it when you're done. # # read_fasta() returns 1 on success and 0 on failure (end of file). # When it returns success, the following variables are set: # # $seq_name = name of sequence (1st word on FASTA title line) # $seq_description = description (remainder of FASTA title line) # $seq_length = length of sequence # $sequence = sequence, gaps and newlines removed # # Modified by TMJL 11/95 for use in tRNAscan-SE package tRNAscanSE::Sequence; use strict; use tRNAscanSE::Utils; use tRNAscanSE::Configuration; use tRNAscanSE::Options; use tRNAscanSE::tRNA; use tRNAscanSE::ArraytRNA; use tRNAscanSE::LogFile; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{file_name} = ""; # name of log file $self->{FILE_H} = undef; # file handle $self->{max_seq_buffer} = 50000000; # Max size of seq buffer read in at once $self->{seq_buf_overlap} = 200; # Nucleotides of overlap between buffers $self->{seq_index_inc} = 100000; $self->{saved_line} = ""; $self->{buffer_overlap_seq} = ""; $self->{buffer_end_index} = 0; $self->{seq_buf_overrun} = 0; $self->{buffer_length} = 0; $self->{key_found} = 0; $self->{all_seq_indices} = +[]; # Keeps track of indexing into seqs for fast retreival $self->{seq_id} = 0; $self->{seq_name} = ""; $self->{seq_description} = ""; $self->{seq_length} = 0; $self->{sequence} = undef; $self->{seq_name_map} = {}; } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub key_found { my $self = shift; if (@_) { $self->{key_found} = shift; } return $self->{key_found}; } sub seq_id { my $self = shift; if (@_) { $self->{seq_id} = shift; } return $self->{seq_id}; } sub seq_name { my $self = shift; if (@_) { $self->{seq_name} = shift; } return $self->{seq_name}; } sub get_seq_id_from_name { my $self = shift; my $name = shift; my $id = -1; if (defined $self->{seq_name_map}->{$name}) { $id = $self->{seq_name_map}->{$name}; } return $id; } sub seq_description { my $self = shift; if (@_) { $self->{seq_description} = shift; } return $self->{seq_description}; } sub seq_length { my $self = shift; if (@_) { $self->{seq_length} = shift; } return $self->{seq_length}; } sub sequence { my $self = shift; if (@_) { $self->{sequence} = shift; } return $self->{sequence}; } sub release_memory { my $self = shift; undef($self->{sequence}); } sub set_seq_info { my $self = shift; $self->{seq_name} = shift; $self->{seq_description} = shift; $self->{seq_length} = shift; $self->{sequence} = shift; } sub reset_buffer_ct { my $self = shift; $self->{buffer_overlap_seq} = ""; $self->{buffer_end_index} = 0; $self->{seq_buf_overrun} = 0; } sub buffer_end_index { my $self = shift; if (@_) { $self->{buffer_end_index} = shift; } return $self->{buffer_end_index}; } sub seq_buf_overrun { my $self = shift; if (@_) { $self->{seq_buf_overrun} = shift; } return $self->{seq_buf_overrun}; } sub seekpos { my $self = shift; my $pos = shift; seek($self->{FILE_H}, $pos, 0); } sub open_file { my $self = shift; my $file = shift; my $mode = shift; my $success = 0; if ($mode eq "read") { &open_for_read(\$self->{FILE_H}, $file); $self->{seq_id} = 0; $self->{saved_line} = ""; } elsif ($mode eq "write") { &open_for_write(\$self->{FILE_H}, $file); } elsif ($mode eq "append") { &open_for_append(\$self->{FILE_H}, $file); } $self->{file_name} = $file; $success = 1; return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } # Reads length of sequence first, then pre-extends to total length # before reading it in (important optimization for very long sequences) # Also, will search for sequence name matching $key sub read_fasta { my $self = shift; my $opts = shift; my $target_seq_id = shift; my $key = $opts->seq_key(); my $fh = $self->{FILE_H}; my ($seqlen, $filepos, $pre_extend_len, $seq_index_step, @seq_index); $self->{seq_name} = ""; $self->{seq_description} = ""; $self->{seq_length} = 0; $self->{sequence} = ""; # if $key is not the global $seq_key (non-alphanumerics already # escaped out for $seq_key) then escape out '\' problem causing char's # if ($key ne $seq_key) { # $key =~ s/(\W)/\\$1/g; # } while ((!eof($fh)) && (($self->{saved_line} =~ /^>/) || ($self->{saved_line} = <$fh>))) { if (($self->{saved_line} =~ /^>\s*($key)\s+(.*)$/) || ($opts->start_at_key()) && ($self->{key_found}) && ($self->{saved_line} =~ /^>\s*(\S*)\s+(.*)$/o)) { $self->{seq_id}++; # if searching for a particular SeqID go on to next seq # if target and current seqid's don't match if ($target_seq_id && ($self->{seq_id} != $target_seq_id)) { $self->{saved_line} = <$fh>; next; } $self->{key_found} = 1; $self->{seq_name} = $1; $self->{seq_description} = $2; $self->{sequence} = ""; $self->{seq_name_map}->{$self->{seq_name}} = $self->{seq_id}; @seq_index = (); $seq_index_step = $self->{seq_index_inc}; # set first bp position to save $filepos = tell($fh); $seqlen = 0; push(@seq_index, $seqlen, tell($fh)); $pre_extend_len = 0; # print LOGFILE "At pos: "; while ($self->{saved_line} = <$fh>) { if ($self->{saved_line} =~ /^>/) { last; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers $seqlen += length($self->{saved_line}); # Save the start position of this chunk of seq for later easy return if ($seqlen > $seq_index_step) { push(@seq_index, $seqlen, tell($fh)); $seq_index_step += $self->{seq_index_inc}; # print LOGFILE "($Seqlen) "; } if (($pre_extend_len == 0) && ($seqlen >= $self->{max_seq_buffer})) { $pre_extend_len = $seqlen; } } push(@seq_index, $seqlen, tell($fh)); $self->{seq_length} = $seqlen; # print LOGFILE " "; $self->{all_seq_indices}->[$self->{seq_id}] = [@seq_index]; seek($fh,$filepos,0); $self->{sequence} = 'X' x $pre_extend_len; # pre-extending string for efficiency $seqlen = 0; while (($seqlen < $self->{max_seq_buffer}) && ($self->{saved_line} = <$fh>)) { if ($self->{saved_line} =~ /^>/) { last; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers substr($self->{sequence}, $seqlen, length($self->{saved_line})) = $self->{saved_line}; $seqlen += length($self->{saved_line}); } # if sequence is longer than MaxSeqBuffer length, # then save last ~200 nt to allow overlap with next buffer frame # this prevents tRNAs on the border between buffers from being chopped # in half (and missed!) if ($seqlen >= $self->{max_seq_buffer}) { $self->{buffer_overlap_seq} = substr($self->{sequence}, $seqlen - $self->{seq_buf_overlap}); $self->{buffer_end_index} = $seqlen - length($self->{buffer_overlap_seq}); $self->{seq_buf_overrun} = 1; } else { $self->{seq_buf_overrun} = 0; } $self->{buffer_length} = length($self->{sequence}); $self->{sequence} = uc($self->{sequence}); $self->{sequence} =~ s/U/T/g; $self->{sequence} =~ s/X/N/g; ## Remove long runs of N's from consideration by pre-scanners ## By doing this, pre-scanner false-pos rate is normal, even ## when scanning unfinished genomes with long N insert "placeholders" if ($opts->tscan_mode() or $opts->eufind_mode()) { $self->{sequence} =~ s/NNNNNNNNNN/CCCCCCCCCC/g; } return 1; } else { if ($self->{saved_line} =~ /^>/) { $self->{seq_id}++; } $self->{saved_line} = <$fh>; } } 0; } sub read_fasta_subseq { my $self = shift; my $target_seq_id = shift; my $subseq_start = shift; my $subseq_len = shift; my $fh = $self->{FILE_H}; my ($seqlen, $filepos, $curpos, $tempseq, $seq_head, $index_pos, $ct); $self->{seq_length} = 0; $self->{sequence} = ""; # find closest position in desired sequence from file position index $ct=0; if (!defined $self->{all_seq_indices}->[$target_seq_id]) { $seqlen = 0; $index_pos = 0; } else { while ($self->{all_seq_indices}->[$target_seq_id][$ct] < $subseq_start) { $ct+=2; } $seqlen = $self->{all_seq_indices}->[$target_seq_id][$ct-2]; $index_pos = $self->{all_seq_indices}->[$target_seq_id][$ct-1]; } seek ($fh, $index_pos, 0); $tempseq = ""; # scan until I get to the sequence position while (($seqlen < $subseq_start) && ($self->{saved_line} = <$fh>)) { if ($self->{saved_line} =~ /^>/) { return 0; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers $seqlen += length($self->{saved_line}); } $tempseq = 'X' x $subseq_len; # pre-extending string for efficiency $curpos = $seqlen - length($self->{saved_line}); $seq_head = substr($self->{saved_line}, $subseq_start - $curpos - 1); substr($tempseq, 0, length($seq_head)) = $seq_head; $seqlen = length($seq_head); while (($seqlen < $subseq_len) && ($self->{saved_line} = <$fh>)) { if ($self->{saved_line} =~ /^>/) { last; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers substr($tempseq, $seqlen, length($self->{saved_line})) = $self->{saved_line}; $seqlen += length($self->{saved_line}); } $self->{sequence} = substr($tempseq, 0, $subseq_len); $self->{sequence} = uc($self->{sequence}); $self->{sequence} =~ s/U/T/g; $self->{sequence} =~ s/X/N/g; $self->{seq_length} = length($self->{sequence}); return 1; } sub read_fasta_subseq_slow { my $self = shift; my $opts = shift; my $key = shift; my $target_seq_id = shift; my $subseq_start = shift; my $subseq_len = shift; my $fh = $self->{FILE_H}; my ($seqlen, $filepos, $curpos, $tempseq); my $last_header = ""; my $seq_head = ""; $self->{seq_length} = 0; $self->{sequence} = ""; # if $key is not the global $seq_key (non-alphanumerics already # escaped out for $seq_key) then escape out '\' problem causing char's # if ($key ne $seq_key) { $key =~ s/(\W)/\\$1/g; # } while ((!eof(FAHANDLE)) && (($self->{saved_line} =~ /^>/) || ($self->{saved_line} = ))) { if (($self->{saved_line} =~ /^>\s*($key)\s+(.*)$/) || ($opts->start_at_key()) && ($self->{key_found}) && ($self->{saved_line} =~ /^>\s*(\S*)\s+(.*)$/o)) { $self->{seq_id}++; # if searching for a particular SeqID go on to next seq # if target and current seqid's don't match if ($target_seq_id && ($self->{seq_id} != $target_seq_id)) { $self->{saved_line} = <$fh>; next; } $filepos = tell($fh); # save position of last fasta header $last_header = $self->{saved_line}; $self->{key_found} = 1; $self->{seq_name} = $1; $self->{seq_description} = $2; $self->{sequence} = ""; $tempseq = ""; $seqlen = 0; while (($seqlen < $subseq_start) && ($self->{saved_line} = <$fh>)) { if ($self->{saved_line} =~ /^>/) { last; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers $seqlen += length($self->{saved_line}); } $tempseq = 'X' x $subseq_len; # pre-extending string for efficiency $curpos = $seqlen - length($self->{saved_line}); $seq_head = substr($self->{saved_line}, $subseq_start - $curpos - 1); substr($tempseq, 0, length($seq_head)) = $seq_head; $seqlen = length($seq_head); while (($seqlen < $subseq_len) && ($self->{saved_line} = <$fh>)) { if ($self->{saved_line} =~ /^>/) { last; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers substr($tempseq, $seqlen, length($self->{saved_line})) = $self->{saved_line}; $seqlen += length($self->{saved_line}); } $self->{sequence} = substr($tempseq, 0, $subseq_len); $self->{sequence} = uc($self->{sequence}); $self->{sequence} =~ s/U/T/g; $self->{sequence} =~ s/X/N/g; $self->{seq_length} = length($self->{sequence}); seek($fh, $filepos, 0); # return file position to beginning of this seq $self->{seq_id}--; # rewind seqid by 1 $self->{saved_line} = $last_header; # restore to original seq header line return 1; } else { if ($self->{saved_line} =~ /^>/) { $self->{seq_id}++; } $self->{saved_line} = <$fh>; } } 0; } ## read_more_fasta ## Reads remaining portion of large fasta file (size>$MaxSeqBuffer) ## Only reads in $MaxSeqBuffer amount or less each time sub read_more_fasta { my $self = shift; my $opts = shift; my $fh = $self->{FILE_H}; my ($seqlen, $filepos); $filepos = tell($fh); $seqlen = 0; while (($seqlen + $self->{seq_buf_overlap} < $self->{max_seq_buffer}) && ($self->{saved_line} = <$fh>)) { if ($self->{saved_line} =~ /^>/) { last; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers $seqlen += length($self->{saved_line}); } if ($seqlen == 0) { return 0; } seek($fh, $filepos, 0); $self->{sequence} = $self->{buffer_overlap_seq}. 'X' x $seqlen; # pre-extending string for efficiency $seqlen = length($self->{buffer_overlap_seq}); while (($seqlen < $self->{max_seq_buffer}) && ($self->{saved_line} = <$fh>)) { if ($self->{saved_line} =~ /^>/) { last; } $self->{saved_line} =~ s/[ \n\t\d]//g; # strip whitespace & numbers substr($self->{sequence}, $seqlen, length($self->{saved_line})) = $self->{saved_line}; $seqlen += length($self->{saved_line}); } # if sequence is longer than MaxSeqBuffer length, # then save last ~200 nt to allow overlap with next buffer frame # this prevents tRNAs on the border between buffers from being chopped # in half (and missed!) if ($seqlen >= $self->{max_seq_buffer}) { $self->{buffer_overlap_seq} = substr($self->{sequence}, $seqlen - $self->{seq_buf_overlap}); $self->{buffer_end_index} += $seqlen - length($self->{buffer_overlap_seq}); $self->{seq_buf_overrun} = 1; } else { $self->{seq_buf_overrun} = 0; } $self->{buffer_length} = length($self->{sequence}); $self->{sequence} = uc($self->{sequence}); $self->{sequence} =~ s/U/T/g; $self->{sequence} =~ s/X/N/g; ## Remove long runs of N's from consideration by pre-scanners ## By doing this, pre-scanner false-pos rate is normal, even ## when scanning unfinished genomes with long N insert "placeholders" if ($opts->tscan_mode() or $opts->eufind_mode()) { $self->{sequence} =~ s/NNNNNNNNNN/CCCCCCCCCC/g; } return 1; } sub write_fasta { my $self = shift; my $fh = $self->{FILE_H}; my ($pos, $line); print $fh ">$self->{seq_name} $self->{seq_description}\n"; for ($pos = 0; $pos < length($self->{sequence}); $pos += 60) { $line = substr($self->{sequence}, $pos, 60); print $fh $line, "\n"; } } sub get_tRNA_sequence { my $self = shift; my ($global_vars, $trna) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; $self->{seq_name} = $trna->seqname(); $self->{seq_description} = ""; my ($src_seq_len, $fwd_start, $query_len, $upstream, $downstream, $tRNA_seq); my $src_seqid = $self->get_seq_id_from_name($trna->seqname()); my $upstream_len = $global_constants->get("upstream_len"); my $downstream_len = $global_constants->get("downstream_len"); if ($trna->strand() eq "+") { if ($trna->start() - $upstream_len <= 0) { $upstream_len = $trna->start() - 1; } $fwd_start = $trna->start() - $upstream_len; $src_seq_len = $trna->end() - $trna->start() + 1; } else { if ($trna->end() < $trna->start()) { if ($trna->end() - $downstream_len <= 0) { $downstream_len = $trna->end() - 1; } $fwd_start = $trna->end() - $downstream_len; $src_seq_len = $trna->start() - $trna->end() + 1; } else { if ($trna->start() - $downstream_len <= 0) { $downstream_len = $trna->start() - 1; } $fwd_start = $trna->start() - $downstream_len; $src_seq_len = $trna->end() - $trna->start() + 1; } } $query_len = $upstream_len + $src_seq_len + $downstream_len; if (!$self->read_fasta_subseq($src_seqid, $fwd_start, $query_len)) { # if can't find it on first try, reposition # to beginning of file & try once more $log->broadcast("Missed ".$trna->seqname()." using quick index. Rewinding seq file and trying again with slow search..."); $self->seekpos(0); if (!$self->read_fasta_subseq_slow($opts, $trna->seqname(), $src_seqid, $fwd_start, $query_len)) { $log->warning("Could not find ".$trna->seqname()." in ".$opts->fasta_file()); $log->broadcast("Skipping to next tRNA hit..."); return 0; } } if ($trna->strand() eq "+") { $downstream_len = $self->{seq_length} - $upstream_len - $src_seq_len; $upstream = substr($self->{sequence}, 0, $upstream_len); $downstream = ""; if ($downstream_len > 0) { $downstream = substr($self->{sequence}, $upstream_len + $src_seq_len); } $tRNA_seq = substr($self->{sequence}, $upstream_len, $src_seq_len); } else { $upstream_len = $self->{seq_length} - $downstream_len - $src_seq_len; $self->{sequence} = &rev_comp_seq($self->{sequence}); $upstream = ""; if ($upstream_len > 0) { $upstream = substr($self->{sequence}, 0, $upstream_len); } $downstream = substr($self->{sequence}, $upstream_len + $src_seq_len); $tRNA_seq = substr($self->{sequence}, $upstream_len, $src_seq_len); } $trna->seq($tRNA_seq); $trna->upstream($upstream); $trna->downstream($downstream); } sub mask_out_sequence { my $self = shift; my ($seq_file, $temp_seq_file, $tRNA_hits) = @_; my $fh_seq_in = undef; my $fh_seq_out = undef; my $line = ""; my $last_line = ""; my $seqname = ""; my %cms_hits = (); my $hits = []; my $ct = 0; my $written_len = 0; my $seq_start = 0; my $subseq_start = 0; my $subseq_len = 0; my $N_start = 0; for (my $i = 0; $i < $tRNA_hits->get_count(); $i++) { if (defined $cms_hits{$tRNA_hits->get($i)->seqname()}) { push (@{$cms_hits{$tRNA_hits->get($i)->seqname()}}, $tRNA_hits->get($i)); } else { $hits = []; push (@$hits, $tRNA_hits->get($i)); $cms_hits{$tRNA_hits->get($i)->seqname()} = $hits; } } &open_for_read(\$fh_seq_in, $seq_file); &open_for_write(\$fh_seq_out, $temp_seq_file); while ($line = <$fh_seq_in>) { chomp($line); if ($line =~ /^>([^\t]+)$/) { $seqname = $1; $seqname = &trim($seqname); if (index($seqname, ' ') > -1) { $seqname = substr($seqname, 0, index($seqname, ' ')); } $hits = undef; $ct = 0; if (defined $cms_hits{$seqname}) { $hits = $cms_hits{$seqname}; $subseq_len = $hits->[$ct]->len(); $seq_start = $hits->[$ct]->start(); } $written_len = 0; $N_start = 0; if ($last_line ne "") { print $fh_seq_out $last_line . "\n"; $last_line = ""; } print $fh_seq_out $line . "\n"; } elsif ($line =~ /^\s*$/) {} else { if ($last_line ne "") { $line = $last_line . $line; $last_line = ""; } if (defined $hits) { if ($ct < scalar(@$hits)) { if ($written_len + length($line) < $seq_start) { print $fh_seq_out $line . "\n"; $written_len += length($line); } else { if ($N_start > 0) { $subseq_start = 1; } else { $subseq_start = $seq_start - $written_len; print $fh_seq_out substr($line, 0, $subseq_start - 1); $written_len += ($subseq_start - 1); } if (length($line) >= ($subseq_start + $subseq_len - 1)) { print $fh_seq_out 'N' x $subseq_len; print $fh_seq_out "\n"; $written_len += $subseq_len; if (length($line) > ($subseq_start + $subseq_len - 1)) { $last_line = substr($line, $subseq_start + $subseq_len - 1); } $N_start = 0; $ct++; if ($ct < scalar(@$hits)) { $subseq_len = $hits->[$ct]->len(); $seq_start = $hits->[$ct]->start(); } } else { print $fh_seq_out 'N' x (length($line) - $subseq_start + 1); print $fh_seq_out "\n"; $written_len += (length($line) - $subseq_start + 1); $N_start = 1; $subseq_len -= (length($line) - $subseq_start + 1); } } } else { print $fh_seq_out $line . "\n"; $written_len += length($line); } } else { print $fh_seq_out $line . "\n"; $written_len += length($line); } } } close($fh_seq_in); close($fh_seq_out); } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/Configuration.pm0000644000543100007160000000522213100447276020453 0ustar pchanlowelab# tRNAscanSE/Configuration.pm # This class contains functions for parsing tRNAscan-SE configuration file. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::Configuration; use strict; sub new { my $class = shift; my $self = { @_ }; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{conf} = ""; $self->{home_dir} = $ENV{'HOME'}; } sub config_file { my $self = shift; if (@_) { $self->{conf} = shift; } return $self->{conf}; } sub get { my $self = shift; my $key = shift; if (defined $self->{$key}) { return $self->{$key}; } else { return undef; } } sub get_subvalue { my $self = shift; my $key = shift; my $subkey = shift; if (defined $self->{$key}->{$subkey}) { return $self->{$key}->{$subkey}; } else { return undef; } } # Read configuration file sub read_configuration_file { my $self = shift; my $line = ""; my ($key, $value, $temp, $key2, $value2, $subkey1, $subkey2, $index); open (FILE_IN, "$self->{conf}") || die "Fail to open configuration file $self->{conf}. Please use -c to specify a local configuration file."; while ($line = ) { chomp($line); if ($line !~ /^#/) { if ($line =~ /^(\S+):\s+(.+)\s*$/) { $key = $1; $value = $2; $temp = $value; $index = index($temp, "}"); while ($index > -1) { $key2 = substr($temp, index($temp,"{") + 1, $index - index($temp,"{") - 1); $value2 = $self->{$key2}; $value =~ s/{$key2}/$value2/; $temp = substr($temp, $index + 1); $index = index($temp, "}"); } if (index($value, "\$\$") > -1) { $temp = "$$"; $value =~ s/\$\$/$temp/; } if ($key =~ /^(\S+)\.(\S+)/) { $subkey1 = $1; $subkey2 = $2; $self->{$subkey1}->{$subkey2} = $value; } else { if ($key eq "temp_dir" and defined $self->{$key}) {} else { $self->{$key} = $value; } } } } } close (FILE_IN); } sub set_temp_dir { my $self = shift; if (@_) { $self->{temp_dir} = shift; } } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/MultiResultFile.pm0000644000543100007160000001266113077042632020742 0ustar pchanlowelab# tRNAscanSE/MultiResultFile.pm # This class defines the intermediate multi-model result file used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::MultiResultFile; use strict; use tRNAscanSE::Utils; use tRNAscanSE::tRNA; sub new { my $class = shift; my $file_name = shift; my $self = { file_name => $file_name, FILE_H => undef, log_file => 0 }; $self->{process_id} = $$; if ($file_name eq "") { $self->{file_name} = "tscan$$"."_multisp.out"; } $self->{models} = []; $self->{indexes} = []; bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub clear { my $self = shift; $self->{file_name} = ""; @{$self->{indexes}} = (); } sub clear_index { my $self = shift; @{$self->{indexes}} = (); } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub get_indexes { my $self = shift; return @{$self->{indexes}}; } sub get_pos { my $self = shift; my $index = shift; my $pos = undef; if ($index > -1 and $index < scalar(@{$self->{indexes}})) { $pos = $self->{indexes}->[$index]->[0]; } return $pos; } sub open_file { my $self = shift; my $mode = shift; my $success = 0; if ($self->{file_name} ne "") { if ($mode eq "read") { &open_for_read(\$self->{FILE_H}, $self->{file_name}); } elsif ($mode eq "write") { &open_for_write(\$self->{FILE_H}, $self->{file_name}); } elsif ($mode eq "append") { &open_for_append(\$self->{FILE_H}, $self->{file_name}); } $success = 1; } else { die "Multi-model intermediate result file name is not set.\n" } return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } sub write_line { my $self = shift; my $line = shift; my $fh = $self->{FILE_H}; print $fh $line . "\n"; } sub get_line { my $self = shift; my $fh = $self->{FILE_H}; if (my $line = <$fh>) { chomp($line); return ($line); } else { return undef; } } sub read_models { my $self = shift; my $line = $self->get_line(); if (defined $line) { my @columns = split(/\t/, $line); for (my $i = 1; $i < scalar(@columns); $i++) { push(@{$self->{models}}, $columns[$i]); } } } sub get_next_record { my $self = shift; my $fh = $self->{FILE_H}; if (defined $fh and my $line = <$fh>) { chomp($line); my @columns = split(/\t/, $line); return ($columns[0], $line); } else { return ("", ""); } } sub get_next_tRNA { my $self = shift; my $tRNA = shift; $self->retrieve_record($tRNA); } sub get_tRNA { my $self = shift; my $filepos = shift; my $tRNA = shift; my $fh = $self->{FILE_H}; seek($fh, $filepos, 0); $self->retrieve_record($tRNA); } sub retrieve_record { my $self = shift; my $tRNA = shift; my $fh = $self->{FILE_H}; if (defined $fh and my $line = <$fh>) { chomp($line); my @columns = split(/\t/, $line, -1); if (defined $columns[0] and $columns[0] eq $tRNA->seqname().".t".&pad_num($tRNA->id(), 6)) { for (my $i = 1; $i < scalar(@columns); $i++) { if ($columns[$i] ne "") { if ($self->{models}->[$i-1] =~ /^mito_(\S+)$/) { $tRNA->add_model_hit("mito", $1, $columns[$i], ""); } else { $tRNA->add_model_hit("cyto", $self->{models}->[$i-1], $columns[$i], ""); } } } } } } sub sort_records { my $self = shift; my $key = shift; if ($key eq "tRNAscan_id") { $self->build_tRNAscan_id_index(); } } sub build_tRNAscan_id_index { my $self = shift; my $line = ""; my @columns = (); my $filepos = undef; my $record = []; my @indexes = (); if ($self->open_file("read")) { my $fh = $self->{FILE_H}; $line = <$fh>; $filepos = tell($fh); while ($line = <$fh>) { $record = []; @columns = split(/\t/, $line); push(@$record, $filepos); push(@$record, $columns[0]); push(@indexes, $record); $filepos = tell($fh); } $self->close_file(); } @{$self->{indexes}} = sort {$a->[1] cmp $b->[1]} @indexes; } sub bsearch_tRNAscan_id { my $self = shift; my $x = shift; my ($l, $u) = (0, @{$self->{indexes}} - 1); my $i; while ($l <= $u) { $i = int(($l + $u)/2); if ($self->{indexes}->[$i]->[1] lt $x) { $l = $i+1; } elsif ($self->{indexes}->[$i]->[1] gt $x) { $u = $i-1; } else { return $i; } } return -1; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/ScanResult.pm0000644000543100007160000007175113261257212017736 0ustar pchanlowelab# tRNAscanSE/ScanResult.pm # This class describes the outputs of scan results used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::ScanResult; use strict; use tRNAscanSE::Utils; use tRNAscanSE::Sequence; use tRNAscanSE::tRNA; use tRNAscanSE::ArraytRNA; use tRNAscanSE::IntResultFile; use tRNAscanSE::MultiResultFile; use tRNAscanSE::Options; require Exporter; our @ISA = qw(Exporter); our @EXPORT = qw(save_Acedb_from_firstpass write_tRNA write_tRNAs output_tRNA write_bed output_split_fragments print_results_header); our $printed_header = 0; # keeps track of whether or # or not results column header # has been printed yet our ($max_seq_name_width, $max_seq_len_width); sub save_Acedb_from_firstpass { my ($output_codon, $r_one_let_trans_map, $fp_tRNAs, $out_file) = @_; my $triplet = ""; &open_for_append(\*FILE_H, $out_file); for (my $i = 0; $i < $fp_tRNAs->get_count(); $i++) { my $trna = $fp_tRNAs->get($i); printf FILE_H "Sequence\t%s\nSubsequence\t%s.t%d %d %d\n\n", $trna->seqname(), $trna->seqname(), $i + 1, $trna->start(), $trna->end(); printf FILE_H "Sequence\t%s.t%d\nSource\t\t%s\n", $trna->seqname(), $i + 1, $trna->seqname(); if ($trna->get_intron_count() > 0) { my @ar_introns = $trna->ar_introns(); if ($ar_introns[0]->{rel_start} < $ar_introns[0]->{rel_end}) { printf FILE_H "Source_Exons\t1 %d\n", ($ar_introns[0]->{rel_start} - $trna->start()); printf FILE_H "Source_Exons\t%d %d\n", $ar_introns[0]->{rel_end} - $trna->start() + 2, $trna->end() - $trna->start() + 1; } else { printf FILE_H "Source_Exons\t1 %d\n", ($trna->start() - $ar_introns[0]->{rel_start} + 1); printf FILE_H "Source_Exons\t%d %d\n", $trna->start() - $ar_introns[0]->{rel_end} + 2, $trna->start() - $trna->end() + 1; } } printf FILE_H "Brief_identification tRNA-%s\n", $trna->isotype(); # either output Codon or Anticodon for tRNA $triplet = uc($trna->anticodon()); if ($output_codon) { $triplet = &rev_comp_seq($triplet); } printf FILE_H "Transcript tRNA \"%s %s %s\"\n\n", $triplet, $trna->isotype(), $r_one_let_trans_map->{$trna->isotype()}; } close(FILE_H); } sub print_results_header { my ($TABOUT, $opts, $get_hmm_score, $seq_name_width, $seq_len_width, $fp) = @_; my ($label, $codon_label) = ""; if ($opts->cove_mode()) { $label = "\tCove"; } elsif ($opts->infernal_mode()) { $label = "\tInf"; } elsif ($opts->eufind_mode() && !$opts->tscan_mode()) { $label = "\tEufind"; } if ($opts->output_codon()) { $codon_label = " "; } else { $codon_label = "Anti"; } if (!($opts->ace_output())) { printf {$$TABOUT} "%-".$seq_name_width."s\t\t","Sequence"; printf {$$TABOUT} "%-".$seq_len_width."s\t","tRNA"; printf {$$TABOUT} "%-".$seq_len_width."s\t","Bounds"; print {$$TABOUT} "tRNA\t$codon_label\tIntron Bounds",$label; if ($get_hmm_score) { print {$$TABOUT} "\tHMM\t2'Str"; } if ($opts->infernal_score()) { print {$$TABOUT} "\tInf"; } if ($opts->save_source()) { print {$$TABOUT} "\tHit"; } if (!$fp and ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype() and $opts->detail()) or $opts->metagenome_mode())) { print {$$TABOUT} "\tIsotype\tIsotype"; if ($opts->euk_mode() and $opts->mito_model() ne "") { print {$$TABOUT} "\tType"; } } print {$$TABOUT} "\t "; print {$$TABOUT} "\n"; printf {$$TABOUT} "%-".$seq_name_width."s\t","Name"; print {$$TABOUT} "tRNA \#\t"; printf {$$TABOUT} "%-".$seq_len_width."s\t","Begin"; printf {$$TABOUT} "%-".$seq_len_width."s\t","End"; print {$$TABOUT} "Type\tCodon\tBegin\tEnd\tScore"; if ($get_hmm_score) { print {$$TABOUT} "\tScore\tScore"; } if ($opts->infernal_score()) { print {$$TABOUT} "\tScore"; } if ($opts->save_source()) { print {$$TABOUT} "\tOrigin"; } if (!$fp and ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype() and $opts->detail()) or $opts->metagenome_mode())) { print {$$TABOUT} "\tCM\tScore"; if ($opts->euk_mode() and $opts->mito_model() ne "") { print {$$TABOUT} "\t "; } } print {$$TABOUT} "\tNote"; print {$$TABOUT} "\n"; printf {$$TABOUT} "%-".$seq_name_width."s\t","--------"; print {$$TABOUT} "------\t"; printf {$$TABOUT} "%-".$seq_len_width."s\t","-----"; printf {$$TABOUT} "%-".$seq_len_width."s\t","------"; print {$$TABOUT} "----\t-----\t-----\t----\t------"; if ($get_hmm_score) { print {$$TABOUT} "\t-----\t-----"; } if ($opts->infernal_score()) { print {$$TABOUT} "\t-----"; } if ($opts->save_source()) { print {$$TABOUT} "\t------"; } if (!$fp and ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype() and $opts->detail()) or $opts->metagenome_mode())) { print {$$TABOUT} "\t-------\t-------"; if ($opts->euk_mode() and $opts->mito_model() ne "") { print {$$TABOUT} "\t---------"; } } print {$$TABOUT} "\t------"; print {$$TABOUT} "\n"; } } sub write_tRNA { my ($file_name, $seq_name, $seq_desc, $seq, $overwrite) = @_; my $trna_file = tRNAscanSE::Sequence->new; my $write_mode = "append"; if ($overwrite) { $write_mode = "write"; } $trna_file->set_seq_info($seq_name, $seq_desc, length($seq), $seq); $trna_file->open_file($file_name, $write_mode); $trna_file->write_fasta(); $trna_file->close_file(); } sub write_tRNAs { my ($file_name, $sp_int_results, $mat_seq, $overwrite, $model) = @_; my $count = 0; my $trna_file = tRNAscanSE::Sequence->new; my $write_mode = "append"; if ($overwrite) { $write_mode = "write"; } my $seq = ""; my $tRNA = tRNAscanSE::tRNA->new; $trna_file->open_file($file_name, $write_mode); if ($sp_int_results->open_file("read")) { my @record_indexes = $sp_int_results->get_indexes(); for (my $i = 0; $i < scalar(@record_indexes); $i++) { $sp_int_results->get_tRNA($record_indexes[$i]->[0], $tRNA); if ($model eq "" or $tRNA->model() eq $model) { if ($mat_seq) { $seq = $tRNA->mat_seq(); } else { $seq = $tRNA->seq(); } $trna_file->set_seq_info($tRNA->seqname().".t".&pad_num($tRNA->id(), 6), "", length($seq), $seq); $trna_file->write_fasta(); $count++; } } } $trna_file->close_file(); return $count; } # Write final tRNA prediction to various selected output sources/files # Sets globals $MaxSeqNameWidth and $MaxSeqLenWidth and $printed_header sub output_tRNA { my ($global_vars, $cm, $r_tab_results, $get_hmm_score, $program_id) = @_; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; my $gc = $global_vars->{gc}; my $sp_int_results = $global_vars->{sp_int_results}; my $iso_int_results = $global_vars->{iso_int_results}; my $tRNA = tRNAscanSE::tRNA->new; my $results_line = ""; my $isotype_line = ""; my ($iso_models, $mito_models); my @sp_indexes = $sp_int_results->get_indexes(); if ($sp_int_results->open_file("read")) { if (!$opts->no_isotype() and $iso_int_results->open_file("read")) { ($iso_models, $mito_models) = &get_models($opts, $cm); $iso_int_results->read_models(); } if ($opts->isotype_specific_file() ne "") { &open_for_append(\*ISOTYPE, $opts->isotype_specific_file()); } if ($opts->save_all_struct()) { &open_for_append(\*SECSTRUCT, $opts->all_struct_file()); } if ($opts->ace_output()) { &open_for_append(\*ACEOUT, $opts->out_file()); } else { &open_for_append(\*TABOUT, $opts->out_file()); } if ($opts->output_fasta_file() ne "") { &open_for_append(\*FASTA, $opts->output_fasta_file()); } for (my $i = 0; $i < scalar(@sp_indexes); $i++) { $sp_int_results->get_tRNA($sp_indexes[$i]->[0], $tRNA); if (!$opts->no_isotype()) { $iso_int_results->get_next_tRNA($tRNA); } my ($type, $model, $score, $ss) = $tRNA->get_highest_score_model(); if ($tRNA->isotype() eq "Met" and $type eq "cyto" and ($model eq "iMet" or $model eq "fMet" or $model eq "Ile2")) { $tRNA->isotype($model); } elsif ($tRNA->isotype() eq "Met" and $type eq "cyto" and $model ne "Met" and $model ne "iMet" and $model ne "fMet") { $tRNA->sort_multi_models("model"); my ($met_iso_model, $met_iso_score, $met_iso_ss) = $tRNA->get_model_hit("cyto", $tRNA->isotype()); my ($ile2_iso_model, $ile2_iso_score, $ile2_iso_ss) = $tRNA->get_model_hit("cyto", "Ile2"); if ($ile2_iso_score > 0 and $met_iso_score > 0) { if (($score - $ile2_iso_score) <= 5 and ($ile2_iso_score - $met_iso_score) >= 5 and $tRNA->score() > 50) { $tRNA->isotype("Ile2"); } } } if (!$opts->results_to_stdout()) { $log->broadcast($tRNA->tRNAscan_id().": ".$opts->second_pass_label()." type= ".$tRNA->isotype()."\t ". "Score= ".$tRNA->score()); } if ($opts->save_all_struct()) { &save_allStruct_output(\*SECSTRUCT, $opts, $gc, $get_hmm_score, $tRNA); } if ($opts->output_fasta_file() ne "") { &write_tRNA_sequence(\*FASTA, $tRNA); } # Create tabular results line, ready for output if (!$printed_header) { $max_seq_name_width = &max(length($tRNA->src_seqid()) + 1, 8); $max_seq_len_width = length($tRNA->src_seqlen()); } $results_line = &construct_tab_output($opts, $get_hmm_score, $tRNA, $max_seq_name_width, $max_seq_len_width); # Internal copy of results saved for later uses push(@$r_tab_results, $results_line); if ($opts->ace_output()) { &save_Acedb_from_secpass(\*ACEOUT, $opts, $gc, $tRNA, $program_id); } else { if (!($opts->brief_output() || $printed_header)) { &print_results_header(\*TABOUT, $opts, $get_hmm_score, $max_seq_name_width, $max_seq_len_width, 0); if ($opts->isotype_specific_file() ne "") { &print_isotype_specific_header(\*ISOTYPE, $opts, $iso_models, $mito_models); } $printed_header = 1; } print TABOUT $results_line; if ($opts->isotype_specific_file() ne "") { $isotype_line = &construct_isotype_specific_output($opts, $iso_models, $mito_models, $tRNA); print ISOTYPE $isotype_line; } } } if ($opts->ace_output()) { close ACEOUT; } else { close TABOUT; } if ($opts->save_all_struct()) { close SECSTRUCT; } if ($opts->isotype_specific_file() ne "") { close ISOTYPE; } if (!$opts->no_isotype()) { $iso_int_results->close_file(); } if (!$opts->output_fasta_file() ne "") { close FASTA; } $sp_int_results->close_file(); } } sub save_allStruct_output { my ($SECSTRUCT, $opts, $gc, $get_hmm_score, $tRNA) = @_; my $ruler = ' * |' x 20; # ruler printed out with # secondary structure output my $seqlen = length($tRNA->seq()); my ($type, $model, $score, $ss) = $tRNA->get_highest_score_model(); if ($tRNA->strand() eq "+") { print {$$SECSTRUCT} $tRNA->seqname().".trna".$tRNA->id()." (".$tRNA->start()."-".$tRNA->end().")\t", "Length: $seqlen bp\nType: ".$tRNA->isotype()."\t"; } else { print {$$SECSTRUCT} $tRNA->seqname().".trna".$tRNA->id()." (".$tRNA->end()."-".$tRNA->start().")\t", "Length: $seqlen bp\nType: ".$tRNA->isotype()."\t"; } if ($opts->output_codon()) { print {$$SECSTRUCT} "Codon: ", &rev_comp_seq($tRNA->anticodon()), " at "; } else { print {$$SECSTRUCT} "Anticodon: ".$tRNA->anticodon()." at "; } if ($tRNA->anticodon() eq $gc->undef_anticodon()) { print {$$SECSTRUCT} "0-0 (0-0)\t"; } else { my @ar_ac_pos = $tRNA->ar_ac_pos(); for (my $i = 0; $i < scalar(@ar_ac_pos); $i++) { if ($i > 0) { print {$$SECSTRUCT} ","; } print {$$SECSTRUCT} $ar_ac_pos[$i]->{rel_start}."-".$ar_ac_pos[$i]->{rel_end}; } for (my $i = 0; $i < scalar(@ar_ac_pos); $i++) { if ($i == 0) { print {$$SECSTRUCT} " ("; } elsif ($i > 0) { print {$$SECSTRUCT} ","; } if ($tRNA->strand() eq "+") { print {$$SECSTRUCT} $ar_ac_pos[$i]->{rel_start} + $tRNA->start() - 1, "-", $ar_ac_pos[$i]->{rel_start} + $tRNA->start() + 1; } else { print {$$SECSTRUCT} $tRNA->end() - $ar_ac_pos[$i]->{rel_start} + 1, "-", $tRNA->end() - $ar_ac_pos[$i]->{rel_start} - 1; } if ($i == (scalar(@ar_ac_pos) - 1)) { print {$$SECSTRUCT} ")\t"; } } } print {$$SECSTRUCT} "Score: ".$tRNA->score()."\n"; my @ar_introns = (); my $nci_count = 0; if ($tRNA->get_intron_count() > 0) { @ar_introns = $tRNA->ar_introns(); foreach my $intron (@ar_introns) { if (defined $intron) { print {$$SECSTRUCT} "Possible intron: $intron->{rel_start}-$intron->{rel_end} "; if ($tRNA->strand() eq "+") { print {$$SECSTRUCT} "(".$intron->{start}."-".$intron->{end}.")\n"; } else { print {$$SECSTRUCT} "(".$intron->{end}."-".$intron->{start}.")\n"; } } } } my $line = ""; my $note = ""; if ($tRNA->is_pseudo() and $tRNA->is_trunc()) { $note = "Possible truncation, pseudogene"; } elsif ($tRNA->is_pseudo()) { $note = "Possible pseudogene"; } elsif ($tRNA->is_trunc()) { $note = "Possible truncation"; } if ($note ne "") { $line = sprintf("%s", $note); } if ($get_hmm_score) { if ($note ne "") { $line .= ": "; } $line .= sprintf("HMM Sc=%.2f\tSec struct Sc=%.2f", $tRNA->hmm_score(), $tRNA->ss_score()); } if ($opts->infernal_score()) { my $inf = $tRNA->get_domain_model("infernal"); if (defined $inf) { $line .= "\tInfernal Sc=".$inf->{score}; } } if ($opts->mito_mode()) { $note = ""; if ($tRNA->category() ne "") { $note = $tRNA->category(); $note =~ s/_/ /g; $note =~ s/mito //g; $note =~ s/iso/type/g; $note =~ s/ac/anticodon/g; $note = uc(substr($note, 0, 1)).substr($note, 1); if ($tRNA->note() ne "") { $note = $note . " ". $tRNA->note(); } $line .= "Note: ".$note; } } if ($line ne "") { print {$$SECSTRUCT} $line."\n"; } if (!$opts->arch_mode()) { print {$$SECSTRUCT} " ",substr($ruler, 0, $seqlen - 1),"\n"; print {$$SECSTRUCT} "Seq: ".$tRNA->seq()."\nStr: ".$tRNA->ss()."\n\n"; } else { print {$$SECSTRUCT} " ",substr($ruler, 0, length($tRNA->mat_seq()) - 1),"\n"; print {$$SECSTRUCT} "Seq: ".$tRNA->mat_seq()."\nStr: ".$tRNA->mat_ss()."\n"; if (uc($tRNA->seq()) ne uc($tRNA->mat_seq())) { my $precursor_seq = uc($tRNA->seq()); foreach my $intron (@ar_introns) { if (defined $intron) { my $intron_seq = uc(substr($tRNA->seq(), $intron->{rel_start} - 1, $intron->{rel_end} - $intron->{rel_start} + 1)); if ($intron_seq ne "") { $precursor_seq =~ s/$intron_seq/\[$intron_seq\]/; } } } print {$$SECSTRUCT} "Pre: ". $precursor_seq ."\n\n"; } else { print {$$SECSTRUCT} "\n"; } } } sub write_tRNA_sequence { my ($FASTA, $tRNA) = @_; my $tRNAscan_id = $tRNA->seqname().".trna".$tRNA->id(); print {$FASTA} ">".$tRNAscan_id." ". $tRNA->seqname().":".$tRNA->start()."-".$tRNA->end()." (".$tRNA->strand().") ". $tRNA->isotype()." (".$tRNA->anticodon().") ".length($tRNA->seq())." bp Sc: ".$tRNA->score(); if ($tRNA->is_pseudo()) { print {$FASTA} " Possible pseudogene\n"; } else { print {$FASTA} "\n"; } my $parts = int(length($tRNA->seq()) / 60); my $remain = length($tRNA->seq()) % 60; for (my $j = 0; $j < $parts; $j++) { print {$FASTA} uc(substr($tRNA->seq(), $j * 60, 60))."\n"; } if ($remain > 0) { print {$FASTA} uc(substr($tRNA->seq(), $parts * 60))."\n"; } } # Save tRNA hits in Tabular output sub construct_tab_output { my ($opts, $get_hmm_score, $tRNA, $max_seq_name_width, $max_seq_len_width) = @_; my ($result_line, $tRNA_type); my ($type, $model, $score, $ss) = $tRNA->get_highest_score_model(); $tRNA->sort_multi_models("model"); my ($iso_model, $iso_score, $iso_ss) = $tRNA->get_model_hit("cyto", $tRNA->isotype()); $result_line = sprintf "%-".$max_seq_name_width."s\t", $tRNA->seqname(); $result_line .= $tRNA->id()."\t"; if ($tRNA->strand() eq "+") { $result_line .= sprintf "%-".$max_seq_len_width."d\t", $tRNA->start(); $result_line .= sprintf "%-".$max_seq_len_width."d\t", $tRNA->end(); } else { $result_line .= sprintf "%-".$max_seq_len_width."d\t", $tRNA->end(); $result_line .= sprintf "%-".$max_seq_len_width."d\t", $tRNA->start(); } $result_line .= $tRNA->isotype()."\t"; if ($opts->output_codon()) { $result_line .= (&rev_comp_seq($tRNA->anticodon()))."\t"; } else { $result_line .= $tRNA->anticodon()."\t"; } my @ar_introns = (); if ($tRNA->get_intron_count() == 0) { $result_line .= "0\t0"; } else { my $intron_ct = 0; @ar_introns = $tRNA->ar_introns(); for (my $i = 0; $i < scalar(@ar_introns); $i++) { if (defined $ar_introns[$i]) { if ($intron_ct > 0) { $result_line .= ","; } if ($tRNA->strand() eq "+") { $result_line .= $ar_introns[$i]->{start}; } else { $result_line .= $ar_introns[$i]->{end}; } $intron_ct++; } } $result_line .= "\t"; $intron_ct = 0; for (my $i = 0; $i < scalar(@ar_introns); $i++) { if (defined $ar_introns[$i]) { if ($intron_ct > 0) { $result_line .= ","; } if ($tRNA->strand() eq "+") { $result_line .= $ar_introns[$i]->{end}; } else { $result_line .= $ar_introns[$i]->{start}; } $intron_ct++; } } } $result_line .= "\t".$tRNA->score(); if ($get_hmm_score) { $result_line .= sprintf "\t%.2f\t%.2f", $tRNA->hmm_score(), $tRNA->ss_score(); } if ($opts->infernal_score()) { my $inf = $tRNA->get_domain_model("infernal"); if (defined $inf) { $result_line .= "\t".$inf->{score}; } } if ($opts->save_source()) { $result_line .= "\t".$tRNA->hit_source(); } if ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype() and $opts->detail()) or $opts->metagenome_mode()) { $result_line .= "\t".$model; $result_line .= "\t".$score; if ($opts->euk_mode() and $opts->mito_model() ne "") { $tRNA->category($type); if ($type eq "cyto") { $result_line .= "\tcytosolic"; } else { $result_line .= "\t".$type; } } } if (!$opts->mito_mode() and !$opts->numt_mode()) { my $note = "\t"; if ($tRNA->is_pseudo()) { $note .= "pseudo"; } if ($opts->detail()) { if ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype()) or $opts->metagenome_mode()) { if ($model ne "" and $tRNA->isotype() ne "Undet") { if ($model ne $tRNA->isotype()) { if (($model eq "iMet" or $model eq "fMet" or $model eq "Ile2") and $tRNA->isotype() eq "Met") {} elsif (($model eq "LeuTAA" or $model eq "LeuTAG") and ($tRNA->isotype() eq "Leu" or $tRNA->isotype() eq "Undet") and $type eq "mito") {} elsif (($model eq "SerGCT" or $model eq "SerTGA") and ($tRNA->isotype() eq "Ser" or $tRNA->isotype() eq "Undet") and $type eq "mito") {} else { if ($note ne "\t") { $note .= ","; } $note .= sprintf("IPD:%0.2f", ($iso_score - $score)); } } } } if ($tRNA->is_trunc()) { if ($note ne "\t") { $note .= ","; } $note .= $tRNA->trunc(); } if ($opts->search_mode() eq "archaea") { if ($tRNA->get_intron_count() > 0) { my $ci_count = 0; my $nci_count = 0; for (my $i = 0; $i < scalar(@ar_introns); $i++) { if ($ar_introns[$i]->{type} eq "CI") { $ci_count++; } elsif ($ar_introns[$i]->{type} eq "NCI") { $nci_count++; } } if ($ci_count > 0) { if ($note ne "\t") { $note .= ","; } $note .= "CI"; } if ($nci_count > 0) { if ($note ne "\t") { $note .= ","; } $note .= "NCI:".$nci_count; } } } } $result_line .= $note; } if ($opts->mito_mode()) { my $note = ""; if ($tRNA->category() ne "" and $opts->detail()) { $note = $tRNA->category(); $note =~ s/mito //g; $note =~ s/iso/type/g; if ($tRNA->note() ne "") { $note = $note . $tRNA->note(); } } $result_line .= "\t".$note; } $result_line .= "\n"; return $result_line; } sub get_models { my ($opts, $cm) = @_; my %iso_models = (); my %mito_models = (); my $models = $cm->get_models_from_db($cm->isotype_cm_db_file_path()); foreach my $cur_iso_cm (sort @$models) { my $model = $cur_iso_cm; if ($cur_iso_cm =~ /^arch-(\S+)/ || $cur_iso_cm =~ /^euk-(\S+)/ || $cur_iso_cm =~ /^bact-(\S+)/) { $model = $1; } $iso_models{$model} = 1; } if ($opts->euk_mode() and $opts->mito_model() ne "") { $models = $cm->get_models_from_db($cm->mito_isotype_cm_db_file_path()); foreach my $cur_iso_cm (sort @$models) { $mito_models{$cur_iso_cm} = 1; } } return (\%iso_models, \%mito_models); } sub print_isotype_specific_header { my ($ISOTYPE, $opts, $iso_models, $mito_models) = @_; print {$$ISOTYPE} "tRNAscanID\tAnticodon_predicted_isotype"; foreach my $cur_iso_cm (sort keys %$iso_models) { print {$$ISOTYPE} "\t".$cur_iso_cm; } if ($opts->euk_mode() and $opts->mito_model() ne "") { foreach my $cur_iso_cm (sort keys %$mito_models) { print {$$ISOTYPE} "\tmito_".$cur_iso_cm; } } print {$$ISOTYPE} "\n"; } sub construct_isotype_specific_output { my ($opts, $iso_models, $mito_models, $tRNA) = @_; my $result_line = $tRNA->seqname().".trna".$tRNA->id(); $result_line .= "\t".$tRNA->isotype(); $tRNA->sort_multi_models("model"); foreach my $cur_iso_cm (sort keys %$iso_models) { my ($model, $score, $ss) = $tRNA->get_model_hit("cyto", $cur_iso_cm); if ($model ne "") { $result_line .= "\t".$score; } else { $result_line .= "\t-999"; } } if ($opts->euk_mode() and $opts->mito_model() ne "") { foreach my $cur_iso_cm (sort keys %$mito_models) { my ($model, $score, $ss) = $tRNA->get_model_hit("mito", $cur_iso_cm); if ($model ne "") { $result_line .= "\t".$score; } else { $result_line .= "\t-999"; } } } $result_line .= "\n"; return $result_line; } sub save_Acedb_from_secpass { my ($ACEOUT, $opts, $gc, $tRNA, $program_id) = @_; print {$$ACEOUT} "Sequence\t".$tRNA->seqname()."\nSubsequence\t".$tRNA->tRNAscan_id()." ".$tRNA->start()." ".$tRNA->end()."\n\n"; print {$$ACEOUT} "Sequence\t".$tRNA->tRNAscan_id()."\nSource\t\t".$tRNA->seqname()."\n"; if ($tRNA->get_intron_count() > 0) { my @ar_introns = $tRNA->ar_introns(); print {$$ACEOUT} "Source_Exons\t1 ", $ar_introns[0]->{rel_start} - 1,"\n"; print {$$ACEOUT} "Source_Exons\t", $ar_introns[0]->{rel_end} + 1," ", abs($tRNA->end() - $tRNA->start()) + 1,"\n"; } print {$$ACEOUT} "Brief_identification tRNA-".$tRNA->isotype()."\n", "Transcript tRNA \""; if ($opts->output_codon()) { print {$$ACEOUT} &rev_comp_seq($tRNA->anticodon()); } else { print {$$ACEOUT} $tRNA->anticodon(); } print {$$ACEOUT} " ".$tRNA->isotype()." ", $gc->one_let_trans_map()->{$tRNA->isotype()}, "\"\nScore $program_id ".$tRNA->score()."\n"; if ($tRNA->is_pseudo()) { printf {$$ACEOUT} "Remark \"Likely pseudogene (HMM Sc=%.2f / Sec struct Sc=%.2f)\"\n", $tRNA->hmm_score(), $tRNA->ss_score(); } print {$$ACEOUT} "\n"; } sub write_bed { my ($global_vars) = @_; my $opts = $global_vars->{options}; my $sp_int_results = $global_vars->{sp_int_results}; my $iso_int_results = $global_vars->{iso_int_results}; $sp_int_results->sort_records("bed_output"); if (!$opts->no_isotype()) { $iso_int_results->sort_records("tRNAscan_id"); } my $tRNA = tRNAscanSE::tRNA->new; &open_for_append(\*FILE_OUT, $opts->bed_file()); my @sp_indexes = $sp_int_results->get_indexes(); my @ iso_indexes = $iso_int_results->get_indexes(); if ($sp_int_results->open_file("read")) { if (!$opts->no_isotype()) { $iso_int_results->open_file("read"); } for (my $i = 0; $i < scalar(@sp_indexes); $i++) { $sp_int_results->get_tRNA($sp_indexes[$i]->[0], $tRNA); if (!$opts->no_isotype()) { my $id = $tRNA->seqname().".t".&pad_num($tRNA->id(), 6); my $index = $iso_int_results->bsearch_tRNAscan_id($id); if ($index > -1) { $iso_int_results->get_tRNA($iso_indexes[$index]->[0], $tRNA); my ($type, $model, $score, $ss) = $tRNA->get_highest_score_model(); if ($tRNA->isotype() eq "Met" and $type eq "cyto" and ($model eq "iMet" or $model eq "fMet" or $model eq "Ile2")) { $tRNA->isotype($model); $tRNA->tRNAscan_id($tRNA->seqname().".tRNA".$tRNA->id()."-".$tRNA->isotype().$tRNA->anticodon()); } elsif ($tRNA->isotype() eq "Met" and $type eq "cyto" and $model ne "Met" and $model ne "iMet" and $model ne "fMet") { $tRNA->sort_multi_models("model"); my ($met_iso_model, $met_iso_score, $met_iso_ss) = $tRNA->get_model_hit("cyto", $tRNA->isotype()); my ($ile2_iso_model, $ile2_iso_score, $ile2_iso_ss) = $tRNA->get_model_hit("cyto", "Ile2"); if ($ile2_iso_score > 0 and $met_iso_score > 0) { if (($score - $ile2_iso_score) <= 5 and ($ile2_iso_score - $met_iso_score) >= 5 and $tRNA->score() > 50) { $tRNA->isotype("Ile2"); $tRNA->tRNAscan_id($tRNA->seqname().".tRNA".$tRNA->id()."-".$tRNA->isotype().$tRNA->anticodon()); } } } } } print FILE_OUT $tRNA->seqname()."\t".($tRNA->start() - 1)."\t".$tRNA->end()."\t".$tRNA->tRNAscan_id()."\t".&convert_bed_score($tRNA->score())."\t". $tRNA->strand()."\t".($tRNA->start() - 1)."\t".$tRNA->end()."\t0\t".($tRNA->get_intron_count() + 1)."\t"; if ($tRNA->get_intron_count() == 0) { print FILE_OUT ($tRNA->end() - $tRNA->start() + 1).",\t0,\n"; } else { my @ar_introns = $tRNA->ar_introns(); my $block_sizes = ""; my $block_starts = "0,"; my $prev_start = 1; if ($tRNA->strand() eq "+") { for (my $i = 0; $i < scalar(@ar_introns); $i++) { $block_sizes .= ($ar_introns[$i]->{rel_start} - $prev_start).","; $block_starts .= $ar_introns[$i]->{rel_end}.","; $prev_start = $ar_introns[$i]->{rel_end} + 1; } $block_sizes .= ($tRNA->end() - $ar_introns[(scalar(@ar_introns)-1)]->{end}).","; } else { $prev_start = length($tRNA->seq()); for (my $i = (scalar(@ar_introns)-1); $i >= 0; $i--) { $block_sizes .= ($prev_start - $ar_introns[$i]->{rel_end}).","; $block_starts .= ($prev_start - $ar_introns[$i]->{rel_start} + 1).","; $prev_start = $ar_introns[$i]->{rel_start}; } $block_sizes .= ($ar_introns[0]->{rel_start} - 1).","; } print FILE_OUT $block_sizes."\t".$block_starts."\n"; } } if (!$opts->no_isotype()) { $iso_int_results->close_file(); } $sp_int_results->close_file(); } close(FILE_OUT); } sub convert_bed_score { my ($cm_score) = @_; my $bed_score = $cm_score * 10; if ($bed_score > 1000) { $bed_score = 1000; } return $bed_score; } sub output_split_fragments { my ($opts, $r_pairs, $r_5half_hits, $r_3half_hits) = @_; my ($r_5half, $r_3half); &open_for_append(\*SPLITFILE, $opts->split_fragment_file()); printf SPLITFILE "Fragment1\tFragment2\tSeqName1\tStartPos1\tEndPos1\tSeqName2\tStartPos2\tEndPos2\tScore1\tScore2\n"; foreach my $r_pair (@$r_pairs) { if (defined $r_pair->{"5h"} && defined $r_pair->{"3h"}) { $r_5half = $r_5half_hits->[$r_pair->{"5h"}]; $r_3half = $r_3half_hits->[$r_pair->{"3h"}]; print SPLITFILE $r_5half->{seq}."\t".$r_3half->{seq}."\t", $r_5half->{hit_seqname}."\t".$r_5half->{tRNA_start}."\t".$r_5half->{tRNA_end}."\t", $r_3half->{hit_seqname}."\t".$r_3half->{tRNA_start}."\t".$r_3half->{tRNA_end}."\t", $r_5half->{score}."\t".$r_3half->{score}."\n"; print SPLITFILE $r_5half->{ss}."\t".$r_3half->{ss}."\t\t\t\t\t\t\t\t\n"; } elsif (defined $r_pair->{"5h"} && !defined $r_pair->{"3h"}) { $r_5half = $r_5half_hits->[$r_pair->{"5h"}]; print SPLITFILE $r_5half->{seq}."\t\t", $r_5half->{hit_seqname}."\t".$r_5half->{tRNA_start}."\t".$r_5half->{tRNA_end}."\t", "\t\t\t", $r_5half->{score}."\t\n"; print SPLITFILE $r_5half->{ss}."\t\t\t\t\t\t\t\t\t\n"; } elsif (!defined $r_pair->{"5h"} && defined $r_pair->{"3h"}) { $r_3half = $r_3half_hits->[$r_pair->{"3h"}]; print SPLITFILE "\t".$r_3half->{seq}."\t", "\t\t\t", $r_3half->{hit_seqname}."\t".$r_3half->{tRNA_start}."\t".$r_3half->{tRNA_end}."\t", "\t".$r_3half->{score}."\n"; print SPLITFILE "\t".$r_3half->{ss}."\t\t\t\t\t\t\t\t\n"; } } close(SPLITFILE); } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/ArraytRNA.pm0000644000543100007160000003474613362217024017460 0ustar pchanlowelab# tRNAscanSE/ArraytRNA.pm # This class contains parameters and functions describing an array of tRNA genes used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::ArraytRNA; use strict; use tRNAscanSE::tRNA; use tRNAscanSE::LogFile; use tRNAscanSE::Options; use tRNAscanSE::Configuration; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{ar_tRNAs} = []; $self->{h_ordered_seqname} = {}; } sub clear { my $self = shift; @{ $self->{ar_tRNAs} } = (); %{$self->{h_ordered_seqname}} = (); } sub array { my $self = shift; if (@_) { @{ $self->{ar_tRNAs} } = @_; } return $self->{ar_tRNAs}; } sub put { my $self = shift; my ($obj) = @_; push(@{$self->{ar_tRNAs}}, $obj); } sub get { my $self = shift; my ($index) = @_; if ($index > -1 && $index < $self->get_count()) { return $self->{ar_tRNAs}->[$index]; } else { return undef; } } sub insert { my $self = shift; my ($obj, $index) = @_; if ($index > -1 and $index <= $self->get_count()) { splice(@{ $self->{ar_tRNAs} }, $index, 0, $obj); } } sub remove { my $self = shift; my $index = shift; if ($index > -1 and $index < $self->get_count()) { splice(@{ $self->{ar_tRNAs} }, $index, 1); } } sub get_count { my $self = shift; return (scalar(@{$self->{ar_tRNAs}})); } sub get_seq_order_index { my $self = shift; my $seqname = shift; my $index = -1; if (defined $self->{h_ordered_seqname}->{$seqname}) { $index = $self->{h_ordered_seqname}->{$seqname}; } return $index; } sub reorder_all_tRNA_id { my $self = shift; my $ct = 0; my $prev_seqname = ""; $self->sort_array("tRNAscanSE_output"); for (my $i = 0; $i < $self->get_count(); $i++) { if ($self->{ar_tRNAs}->[$i]->seqname() ne $prev_seqname) { $ct = 0; } $ct++; $self->{ar_tRNAs}->[$i]->id($ct); $self->{ar_tRNAs}->[$i]->tRNAscan_id($self->{ar_tRNAs}->[$i]->seqname().".tRNA".$ct."-".$self->{ar_tRNAs}->[$i]->isotype().$self->{ar_tRNAs}->[$i]->anticodon()); $prev_seqname = $self->{ar_tRNAs}->[$i]->seqname(); } } sub reorder_tRNA_id { my $self = shift; my $seqname = shift; my $ct = 0; $self->sort_array("tRNAscanSE_output"); for (my $i = 0; $i < $self->get_count(); $i++) { if ($self->{ar_tRNAs}->[$i]->{seqname} lt $seqname) {} elsif ($self->{ar_tRNAs}->[$i]->{seqname} gt $seqname) { last; } else { $ct++; $self->{ar_tRNAs}->[$i]->{id} = $ct; $self->{ar_tRNAs}->[$i]->{tRNAscan_id} = $seqname.".tRNA".$ct."-".$self->{ar_tRNAs}->[$i]->{isotype}.$self->{ar_tRNAs}->[$i]->{anticodon}; } } } sub bsearch_num_field { my $self = shift; my $x = shift; my $key = shift; my ($l, $u) = (0, @{$self->{ar_tRNAs}} - 1); my $i; while ($l <= $u) { $i = int(($l + $u)/2); if ($key eq "id") { if ($self->{ar_tRNAs}->[$i]->id() < $x) { $l = $i+1; } elsif ($self->{ar_tRNAs}->[$i]->id() > $x) { $u = $i-1; } else { return $i; } } elsif ($key eq "position") { if ($self->{ar_tRNAs}->[$i]->position() < $x) { $l = $i+1; } elsif ($self->{ar_tRNAs}->[$i]->position() > $x) { $u = $i-1; } else { return $i; } } } return -1; } sub bsearch_id { my $self = shift; my $x = shift; my $key = shift; my ($l, $u) = (0, @{$self->{ar_tRNAs}} - 1); my $i; while ($l <= $u) { $i = int(($l + $u)/2); if ($key eq "tRNAscan_id") { if ($self->{ar_tRNAs}->[$i]->tRNAscan_id() lt $x) { $l = $i+1; } elsif ($self->{ar_tRNAs}->[$i]->tRNAscan_id() gt $x) { $u = $i-1; } else { return $i; } } elsif ($key eq "tRNAscanid") { if (substr($self->{ar_tRNAs}->[$i]->tRNAscan_id(), 0, rindex($self->{ar_tRNAs}->[$i]->tRNAscan_id(), "-")) lt $x) { $l = $i+1; } elsif (substr($self->{ar_tRNAs}->[$i]->tRNAscan_id(), 0, rindex($self->{ar_tRNAs}->[$i]->tRNAscan_id(), "-")) gt $x) { $u = $i-1; } else { return $i; } } elsif ($key eq "gtrnadb_id") { if ($self->{ar_tRNAs}->[$i]->gtrnadb_id() lt $x) { $l = $i+1; } elsif ($self->{ar_tRNAs}->[$i]->gtrnadb_id() gt $x) { $u = $i-1; } else { return $i; } } elsif ($key eq "extdb_id") { if ($self->{ar_tRNAs}->[$i]->extdb_id() lt $x) { $l = $i+1; } elsif ($self->{ar_tRNAs}->[$i]->extdb_id() gt $x) { $u = $i-1; } else { return $i; } } } return -1; } sub sort_array { my $self = shift; my $key = shift; if ($key eq "tRNAscan_id") { @{$self->{ar_tRNAs}} = sort sort_by_tRNAscan_id @{$self->{ar_tRNAs}}; } elsif ($key eq "tRNAscanid") { @{$self->{ar_tRNAs}} = sort sort_by_tRNAscanid @{$self->{ar_tRNAs}}; } elsif ($key eq "gtrnadb_id") { @{$self->{ar_tRNAs}} = sort sort_by_gtrnadb_id @{$self->{ar_tRNAs}}; } elsif ($key eq "extdb_id") { @{$self->{ar_tRNAs}} = sort sort_by_extdb_id @{$self->{ar_tRNAs}}; } elsif ($key eq "seqname_start") { @{$self->{ar_tRNAs}} = sort sort_by_seqname_start @{$self->{ar_tRNAs}}; } elsif ($key eq "coord") { @{$self->{ar_tRNAs}} = sort sort_by_coord @{$self->{ar_tRNAs}}; } elsif ($key eq "strand") { @{$self->{ar_tRNAs}} = sort sort_by_strand_coord @{$self->{ar_tRNAs}}; } elsif ($key eq "score") { @{$self->{ar_tRNAs}} = sort sort_by_score_coord @{$self->{ar_tRNAs}}; } elsif ($key eq "isotype") { @{$self->{ar_tRNAs}} = sort sort_by_isotype @{$self->{ar_tRNAs}}; } elsif ($key eq "ac") { @{$self->{ar_tRNAs}} = sort sort_by_ac_matscore @{$self->{ar_tRNAs}}; } elsif ($key eq "tRNAscanSE_output") { @{$self->{ar_tRNAs}} = sort sort_by_tRNAscanSE_output @{$self->{ar_tRNAs}}; } } sub sort_by_tRNAscan_id { return ($a->tRNAscan_id() cmp $b->tRNAscan_id()); } sub sort_by_tRNAscanid { return (substr($a->tRNAscan_id(), 0, rindex($a->tRNAscan_id(), "-")) cmp substr($b->tRNAscan_id(), 0, rindex($b->tRNAscan_id(), "-"))); } sub sort_by_gtrnadb_id { return ($a->gtrnadb_id() cmp $b->gtrnadb_id()); } sub sort_by_extdb_id { return ($a->extdb_id() cmp $b->extdb_id()); } sub sort_by_seqname_start { return ($a->seqname() cmp $b->seqname() || $a->start() <=> $b->start()); } sub sort_by_coord { return ($a->ordered_seqname() <=> $b->ordered_seqname() || $a->start() <=> $b->start()); } sub sort_by_strand_coord { return ($a->strand() cmp $b->strand() || $a->ordered_seqname() <=> $b->ordered_seqname() || $a->start() <=> $b->start()); } sub sort_by_score_coord { return ($a->is_mito() <=> $b->is_mito() || $a->score() <=> $b->score() || $a->ordered_seqname() <=> $b->ordered_seqname() || $a->start() <=> $b->start()); } sub sort_by_ac_matscore { return ($a->is_mito() <=> $b->is_mito() || $a->is_numt() <=> $b->is_numt() || $a->isotype() cmp $b->isotype() || $a->anticodon() cmp $b->anticodon() || $a->mat_score() <=> $b->mat_score() || $a->seqname() cmp $b->seqname() || $a->start() <=> $b->start()); } sub sort_by_isotype { return ($a->isotype() cmp $b->isotype() || $a->anticodon() cmp $b->anticodon() || $a->mat_score() <=> $b->mat_score() || $a->seqname() cmp $b->seqname() || $a->start() <=> $b->start()); } sub sort_by_tRNAscanSE_output { if ((($a->strand() eq $b->strand()) && ($a->strand() eq "+")) || ($a->strand() ne $b->strand())) { return ($a->ordered_seqname() <=> $b->ordered_seqname() || $a->strand() cmp $b->strand() || $a->start() <=> $b->start()); } if (($a->strand() eq $b->strand()) && ($a->strand() eq "-")) { return ($a->ordered_seqname() <=> $b->ordered_seqname() || $b->strand() cmp $a->strand() || $b->end() <=> $a->end()); } } sub set_ext_seqname_order { my $self = shift; my $ar = shift; if (scalar(keys %{$self->{h_ordered_seqname}}) > 0) { for (my $i = 0; $i < scalar(@$ar); $i++) { my $seqname = $ar->[$i]->[0]; unshift(@{$ar->[$i]}, $self->{h_ordered_seqname}->{$seqname}); } } } sub set_seqname_order { my $self = shift; my $file = shift; my $log = shift; $self->read_seqname_order_list($file, $log); if (scalar(keys %{$self->{h_ordered_seqname}}) > 0) { for (my $i = 0; $i < scalar(@{$self->{ar_tRNAs}}); $i++) { my $seqname = $self->{ar_tRNAs}->[$i]->seqname(); $self->{ar_tRNAs}->[$i]->ordered_seqname($self->{h_ordered_seqname}->{$seqname}); } } } sub read_seqname_order_list { my $self = shift; my $file = shift; my $log = shift; my $ct = 0; my $line = ""; $log->status("Reading sequnece name order list from $file"); open(FILE_IN, "$file") or die "Error: Fail to open $file\n"; while ($line = ) { chomp($line); if ($line !~ /^#/ && $line ne "") { $ct++; $self->{h_ordered_seqname}->{$line} = $ct; } } close(FILE_IN); } sub intersect { my $self = shift; my $ar = shift; my $mode = shift; my $pair = []; my @pairs = (); # assume input array is pre-sorted # sort tRNAs by coord $self->sort_array("coord"); my $tRNA_ct = 0; for (my $i = 0; $i < scalar(@$ar); $i++) { if ($tRNA_ct < $self->get_count()) { if ($ar->[$i]->[0] == $self->{ar_tRNAs}->[$tRNA_ct]->ordered_seqname()) { if ($mode eq "full") { if ($ar->[$i]->[2] >= $self->{ar_tRNAs}->[$tRNA_ct]->start() && $ar->[$i]->[3] <= $self->{ar_tRNAs}->[$tRNA_ct]->end()) { $pair = []; push(@$pair, $i); push(@$pair, $tRNA_ct); push(@pairs, $pair); $tRNA_ct++; } } elsif($mode eq "any") { if (($ar->[$i]->[2] >= $self->{ar_tRNAs}->[$tRNA_ct]->start() && $ar->[$i]->[2] <= $self->{ar_tRNAs}->[$tRNA_ct]->end()) || ($ar->[$i]->[3] >= $self->{ar_tRNAs}->[$tRNA_ct]->start() && $ar->[$i]->[3] <= $self->{ar_tRNAs}->[$tRNA_ct]->end())) { $pair = []; push(@$pair, $i); push(@$pair, $tRNA_ct); push(@pairs, $pair); $tRNA_ct++; } } } elsif ($ar->[$i]->[0] > $self->{ar_tRNAs}->[$tRNA_ct]->ordered_seqname()) { $tRNA_ct++; } } } return \@pairs; } sub strand_specific_intersect { my $self = shift; my $ar = shift; my $mode = shift; my $pair = []; my @pairs = (); # assume input array is pre-sorted # sort tRNAs by strand and coord $self->sort_array("strand"); my $tRNA_ct = 0; for (my $i = 0; $i < scalar(@$ar); $i++) { if ($tRNA_ct < $self->get_count()) { if ($ar->[$i]->[4] eq $self->{ar_tRNAs}->[$tRNA_ct]->strand()) { if ($ar->[$i]->[0] == $self->{ar_tRNAs}->[$tRNA_ct]->ordered_seqname()) { if ($mode eq "full") { if ($ar->[$i]->[2] >= $self->{ar_tRNAs}->[$tRNA_ct]->start() && $ar->[$i]->[3] <= $self->{ar_tRNAs}->[$tRNA_ct]->end()) { $pair = []; push(@$pair, $i); push(@$pair, $tRNA_ct); push(@pairs, $pair); $tRNA_ct++; } } elsif($mode eq "any") { if (($ar->[$i]->[2] >= $self->{ar_tRNAs}->[$tRNA_ct]->start() && $ar->[$i]->[2] <= $self->{ar_tRNAs}->[$tRNA_ct]->end()) || ($ar->[$i]->[3] >= $self->{ar_tRNAs}->[$tRNA_ct]->start() && $ar->[$i]->[3] <= $self->{ar_tRNAs}->[$tRNA_ct]->end())) { $pair = []; push(@$pair, $i); push(@$pair, $tRNA_ct); push(@pairs, $pair); $tRNA_ct++; } } } elsif ($ar->[$i]->[0] > $self->{ar_tRNAs}->[$tRNA_ct]->ordered_seqname()) { $tRNA_ct++; } } elsif ($ar->[$i]->[4] gt $self->{ar_tRNAs}->[$tRNA_ct]->strand()) { $tRNA_ct++; } } } return \@pairs; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/Stats.pm0000644000543100007160000003612513136454660016754 0ustar pchanlowelab# tRNAscanSE/Stats.pm # This class describes the statistics of each run in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscan::Stats; use strict; use tRNAscanSE::Utils; use tRNAscanSE::Options; use tRNAscanSE::GeneticCode; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{file_name} = ""; # name of log file $self->{FILE_H} = undef; # file handle $self->{fp_start_time} = +[]; # save first pass starting time $self->{fp_end_time} = +[]; # save first pass ending time $self->{sp_end_time} = +[]; # save second pass ending time $self->{seqs_hit} = 0; # num seqs with at least one trna hit $self->{numscanned} = 0; # total sequences scanned $self->{trnatotal} = 0; # total trnas found by tscan $self->{first_pass_base_ct} = 0; # no bases in all seqs in first pass scans $self->{fpass_trna_base_ct} = 0; # no bases in tRNAs in first pass scans $self->{fpos_base_ct} = 0; # no bases in false positive tRNAs $self->{secpass_base_ct} = 0; $self->{coves_base_ct} = 0; $self->{total_secpass_ct} = 0; } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub FILE_H { my $self = shift; return $self->{FILE_H}; } sub start_fp_timer { my $self = shift; @{$self->{fp_start_time}} = (times)[0,2,1,3]; $self->{fp_end_time} = +[]; $self->{sp_end_time} = +[]; } sub end_fp_timer { my $self = shift; @{$self->{fp_end_time}} = (times)[0,2,1,3]; } sub start_sp_timer { my $self = shift; if (!defined $self->{fp_end_time}->[0]) { push (@{$self->{fp_end_time}}, @{$self->{fp_start_time}}); } } sub end_sp_timer { my $self = shift; @{$self->{sp_end_time}} = (times)[0,2,1,3]; } sub seqs_hit { my $self = shift; if (@_) { $self->{seqs_hit} = shift; } return $self->{seqs_hit}; } sub increment_seqs_hit { my $self = shift; if (@_) { $self->{seqs_hit} += shift; } else { $self->{seqs_hit} += 1;} } sub numscanned { my $self = shift; if (@_) { $self->{numscanned} = shift; } return $self->{numscanned}; } sub increment_numscanned { my $self = shift; if (@_) { $self->{numscanned} += shift; } else { $self->{numscanned} += 1;} } sub trnatotal { my $self = shift; if (@_) { $self->{trnatotal} = shift; } return $self->{trnatotal}; } sub increment_trnatotal { my $self = shift; if (@_) { $self->{trnatotal} += shift; } else { $self->{trnatotal} += 1;} } sub decrement_trnatotal { my $self = shift; if (@_) { $self->{trnatotal} -= shift; } else { $self->{trnatotal} -= 1;} } sub first_pass_base_ct { my $self = shift; if (@_) { $self->{first_pass_base_ct} = shift; } return $self->{first_pass_base_ct}; } sub increment_first_pass_base_ct { my $self = shift; if (@_) { $self->{first_pass_base_ct} += shift; } else { $self->{first_pass_base_ct} += 1;} } sub fpass_trna_base_ct { my $self = shift; if (@_) { $self->{fpass_trna_base_ct} = shift; } return $self->{fpass_trna_base_ct}; } sub fpos_base_ct { my $self = shift; if (@_) { $self->{fpos_base_ct} = shift; } return $self->{fpos_base_ct}; } sub increment_fpos_base_ct { my $self = shift; if (@_) { $self->{fpos_base_ct} += shift; } else { $self->{fpos_base_ct} += 1;} } sub secpass_base_ct { my $self = shift; if (@_) { $self->{secpass_base_ct} = shift; } return $self->{secpass_base_ct}; } sub increment_secpass_base_ct { my $self = shift; if (@_) { $self->{secpass_base_ct} += shift; } else { $self->{secpass_base_ct} += 1;} } sub coves_base_ct { my $self = shift; if (@_) { $self->{coves_base_ct} = shift; } return $self->{coves_base_ct}; } sub increment_coves_base_ct { my $self = shift; if (@_) { $self->{coves_base_ct} += shift; } else { $self->{coves_base_ct} += 1;} } sub total_secpass_ct { my $self = shift; if (@_) { $self->{total_secpass_ct} = shift; } return $self->{total_secpass_ct}; } sub increment_total_secpass_ct { my $self = shift; if (@_) { $self->{total_secpass_ct} += shift; } else { $self->{total_secpass_ct} += 1;} } sub open_file { my $self = shift; my $success = 0; if ($self->{file_name} ne "") { &open_for_append(\$self->{FILE_H}, $self->{file_name}); $success = 1; } else { die "Statistics file name is not set.\n" } return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } sub write_line { my $self = shift; my $line = shift; my $fh = $self->{FILE_H}; print $fh $line . "\n"; } sub save_firstpass_stats { my $self = shift; my $fh = $self->{FILE_H}; print $fh "First-pass Stats:\n", "---------------\n"; print $fh "Sequences read: $self->{numscanned}\n"; print $fh "Seqs w/at least 1 hit: $self->{seqs_hit}\n"; print $fh "Bases read: $self->{first_pass_base_ct} (x2 for both strands)\n"; print $fh "Bases in tRNAs: $self->{fpass_trna_base_ct}\n"; print $fh "tRNAs predicted: $self->{trnatotal}\n"; printf $fh "Av. tRNA length: %d\n", int($self->{fpass_trna_base_ct} / &max(1, $self->{trnatotal})); printf $fh "Script CPU time: %.2f s\n", $self->{fp_end_time}->[0] - $self->{fp_start_time}->[0]; printf $fh "Scan CPU time: %.2f s\n", $self->{fp_end_time}->[1] - $self->{fp_start_time}->[1]; printf $fh "Scan speed: %.1f Kbp/sec\n", $self->{first_pass_base_ct}*2/ (&max(0.001, $self->{fp_end_time}->[1] - $self->{fp_start_time}->[1]))/1000; print $fh "\nFirst pass search(es) ended: ",`date`,"\n"; } sub save_final_stats { my $self = shift; my $opts = shift; my $gc = shift; my $prescan_count = shift; my $r_tab_results = shift; my $fh = $self->{FILE_H}; my $second_pass_label = $opts->second_pass_label(); if ($opts->CM_mode() ne "") { print $fh "$second_pass_label Stats:\n-----------\n"; if ($opts->tscan_mode() || $opts->eufind_mode() || $opts->infernal_fp()) { print $fh "Candidate tRNAs read: ", $prescan_count,"\n"; } else { print $fh "Sequences read: $self->{numscanned}\n"; } print $fh "$second_pass_label","-confirmed tRNAs: $self->{total_secpass_ct}\n"; print $fh "Bases scanned by $second_pass_label: $self->{secpass_base_ct}\n"; printf $fh "%% seq scanned by $second_pass_label: %2.1f %%\n", &min(($self->{secpass_base_ct} / &max(1, $self->{first_pass_base_ct} * 2)) * 100,100); printf $fh "Script CPU time: %2.2f s\n", $self->{sp_end_time}->[0] - $self->{fp_end_time}->[0]; printf $fh "$second_pass_label CPU time: %2.2f s\n", $self->{sp_end_time}->[1] - $self->{fp_end_time}->[1]; printf $fh "Scan speed: %.1f bp/sec\n", $self->{secpass_base_ct}/ &max(0.001, $self->{sp_end_time}->[1] - $self->{fp_end_time}->[1]); print $fh "\n$second_pass_label analysis of tRNAs ended: ",`date`,"\n"; if ($opts->tscan_mode() || $opts->eufind_mode()) { print $fh "Summary\n--------\n"; } } my $total_time = ($self->{sp_end_time}->[0] - $self->{fp_start_time}->[0]) + ($self->{sp_end_time}->[1] - $self->{fp_start_time}->[1]); printf $fh "Overall scan speed: %.1f bp/sec\n", &max($self->{first_pass_base_ct} * 2, $self->{secpass_base_ct}) / &max(0.001, $total_time); $self->output_summary($opts, $gc, $r_tab_results); } sub output_summary { my $self = shift; my $opts = shift; my $gc = shift; my $r_tab_results = shift; my $fh = $self->{FILE_H}; my ($trna_ct, $selcys_ct, $stop_sup_ct, $undet_ct, $pseudo_ct, $mismatch_ct, $total, $intron_ct, $line); my (%iso_AR, %ac_AR, %intron_ac_AR, %iso_cm_AR); my ($iso, $ac, $acset, $iso_count, $iso_cm_count, $istart, $aa, $iso_cm); my @columns = (); my $note_col = -1; my $iso_cm_col = -1; $trna_ct = 0; $selcys_ct = 0; $pseudo_ct = 0; $mismatch_ct = 0; $undet_ct = 0; $intron_ct = 0; $stop_sup_ct = 0; $total = 0; $line = shift(@$r_tab_results); while ($line ne '') { if ($line =~ /^(\S+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(\S+)\s+(\S+)\s+([0-9\,]+)\s+([0-9\,]+)\s+(\S+)/) { @columns = split(/\t/, $line, -1); $iso = $columns[4]; $ac = $columns[5]; $istart = &trim($columns[6]); if ($note_col == -1) { $note_col = scalar(@columns) - 1; } if ($iso_cm_col == -1) { if ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype() and $opts->detail()) or $opts->metagenome_mode()) { $iso_cm_col = $note_col - 2; } if ($opts->euk_mode() and $opts->mito_model() ne "") { $iso_cm_col--; } } if ($iso_cm_col > -1) { $iso_cm = $columns[$iso_cm_col]; } if ($note_col > -1 and index($columns[$note_col], "pseudo") > -1) { $pseudo_ct++; $iso_AR{"Pseudo"}++; } elsif ($note_col > -1 and index($columns[$note_col], "IPD") > -1) { $mismatch_ct++; } elsif ($iso eq $gc->undef_isotype()) { $undet_ct++; } elsif ($iso =~ /SeC/) { $selcys_ct++; } elsif ($iso eq "Sup") { $stop_sup_ct++; } else { $trna_ct++; } if ($iso =~ /SeC/) { $iso_AR{"SelCys"}++; $ac_AR{"SelCys"}->{$ac}++; } elsif ($iso eq "Sup") { $iso_AR{"Supres"}++; $ac_AR{"Supres"}->{$ac}++; } else { $iso_AR{$iso}++; $ac_AR{$iso}->{$ac}++; } if (defined $iso_cm) { $iso_cm_AR{$iso_cm}++; } if ($istart ne "0") { my @introns = split(/\,/, $istart); $intron_ct += scalar(@introns); my $tag = $iso; if ($iso =~ /SeC/) { $tag = "SelCys"; } elsif ($iso eq "Sup") { $tag = "Supres"; } $intron_ac_AR{$tag}->{$ac} += scalar(@introns); } } $line = shift(@$r_tab_results); } $total = $trna_ct + $selcys_ct + $pseudo_ct + $mismatch_ct + $undet_ct + $stop_sup_ct; print $fh "\n", "tRNAs decoding Standard 20 AA: $trna_ct\n", "Selenocysteine tRNAs (TCA): $selcys_ct\n", "Possible suppressor tRNAs (CTA,TTA,TCA): $stop_sup_ct\n", "tRNAs with undetermined/unknown isotypes: $undet_ct\n"; if ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype() and $opts->detail()) or $opts->metagenome_mode()) { print $fh "tRNAs with mismatch isotypes: $mismatch_ct\n"; } print $fh "Predicted pseudogenes: $pseudo_ct\n", " -------\n", "Total tRNAs: $total\n\n", "tRNAs with introns: \t$intron_ct\n\n"; foreach $aa (@{$gc->isotypes()}) { foreach $acset ($gc->ac_list()->{$aa}) { foreach $ac (@$acset) { if (defined($intron_ac_AR{$aa}->{$ac})) { print $fh "| $aa-$ac: $intron_ac_AR{$aa}->{$ac} "; } } } } if (scalar(keys %intron_ac_AR) > 0) { print $fh "|\n\n"; } print $fh "Isotype / Anticodon Counts:\n\n"; foreach $aa (@{$gc->isotypes()}) { my $label = $aa; $iso_count = $iso_AR{$aa} + 0; $iso_cm_count = $iso_cm_AR{$aa} + 0; if ($aa eq "Met") { if (defined $iso_AR{iMet}) { $label = "Met/iMet"; $iso_count += $iso_AR{iMet}; } elsif (defined $iso_AR{fMet}) { $label = "Met/fMet"; $iso_count += $iso_AR{fMet}; } if (defined $iso_cm_AR{iMet}) { $iso_cm_count += $iso_cm_AR{iMet}; } elsif (defined $iso_cm_AR{fMet}) { $iso_cm_count += $iso_cm_AR{fMet}; } } elsif ($aa eq "Ile") { if (defined $iso_AR{Ile2}) { $iso_count += $iso_AR{Ile2}; } if (defined $iso_cm_AR{Ile2}) { $iso_cm_count += $iso_cm_AR{Ile2}; } } if ((($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) and !$opts->no_isotype() and $opts->detail()) or $opts->metagenome_mode()) { printf $fh ("%-8s: %d (%d)\t", $label, $iso_count, $iso_cm_count); } else { printf $fh ("%-8s: %d\t", $label, $iso_count); } foreach $acset ($gc->ac_list()->{$aa}) { foreach $ac (@$acset) { if ($ac eq " ") { print $fh " "; } else { my $count = $ac_AR{$aa}->{$ac}; if ($aa eq "Met") { if (defined $ac_AR{iMet}->{$ac}) { $count += $ac_AR{iMet}->{$ac}; } elsif (defined $ac_AR{fMet}->{$ac}) { $count += $ac_AR{fMet}->{$ac}; } } elsif ($aa eq "Ile") { if (defined $ac_AR{Ile2}->{$ac}) { $count += $ac_AR{Ile2}->{$ac}; } } printf $fh ("%5s: %-6s",$ac,$count); } } } print $fh "\n"; } print $fh "\n"; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/IntResultFile.pm0000644000543100007160000002503413075120531020371 0ustar pchanlowelab# tRNAscanSE/IntResultFile.pm # This class defines the intermediate result file used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::IntResultFile; use strict; use tRNAscanSE::Utils; use tRNAscanSE::tRNA; sub new { my $class = shift; my $file_name = shift; my $self = { file_name => $file_name, FILE_H => undef, log_file => 0 }; $self->{process_id} = $$; if ($file_name eq "") { $self->{file_name} = "tscan$$"."_sp.out"; } $self->{indexes} = []; bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub clear { my $self = shift; $self->{file_name} = ""; @{$self->{indexes}} = (); } sub clear_index { my $self = shift; @{$self->{indexes}} = (); } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub get_indexes { my $self = shift; return @{$self->{indexes}}; } sub get_count { my $self = shift; return scalar(@{$self->{indexes}}); } sub get_pos { my $self = shift; my $index = shift; my $pos = undef; if ($index > -1 and $index < scalar(@{$self->{indexes}})) { $pos = $self->{indexes}->[$index]->[0]; } return $pos; } sub open_file { my $self = shift; my $mode = shift; my $success = 0; if ($self->{file_name} ne "") { if ($mode eq "read") { &open_for_read(\$self->{FILE_H}, $self->{file_name}); } elsif ($mode eq "write") { &open_for_write(\$self->{FILE_H}, $self->{file_name}); my $fh = $self->{FILE_H}; print $fh "seqname\tordered_seqname\tid\ttRNAscan_id\tstart\tend\tstrand\tstart2\tend2\tstrand2\tstart3\tend3\tstrand3\tposition\tisotype\tanticodon\t". "ac_pos\tintron\tmodel\tscore\tmat_score\thmm_score\tss_score\tcove_score\tcove_mat_score\tcove_hmm_score\tcove_ss_score\t". "inf_score\tinf_mat_score\tinf_hmm_score\tinf_ss_score\tpseudo\ttrunc\tcategory\t". "hit_source\tsrc_seqid\tsrc_seq_len\tseq\tmat_seq\tss\tmat_ss\n"; } elsif ($mode eq "append") { &open_for_append(\$self->{FILE_H}, $self->{file_name}); } $success = 1; } else { die "Intermediate result file name is not set.\n" } return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } sub write_line { my $self = shift; my $line = shift; my $fh = $self->{FILE_H}; print $fh $line . "\n"; } sub write_tRNA { my $self = shift; my $tRNA = shift; my $fh = $self->{FILE_H}; my $filepos = tell($fh); my $record = []; push(@$record, $filepos); push(@$record, $tRNA->strand()); # strand push(@$record, $tRNA->ordered_seqname()); # ordered_seqname push(@$record, $tRNA->start()); # start push(@$record, $tRNA->end()); # end push(@{$self->{indexes}}, $record); my @ar_ac_pos = $tRNA->ar_ac_pos(); my @ar_introns = $tRNA->ar_introns(); my $cove = $tRNA->get_domain_model("cove"); my $inf = $tRNA->get_domain_model("infernal"); print $fh $tRNA->seqname()."\t".$tRNA->ordered_seqname()."\t".$tRNA->id()."\t".$tRNA->tRNAscan_id()."\t".$tRNA->start()."\t".$tRNA->end()."\t".$tRNA->strand()."\t". $tRNA->exon_start(2)."\t".$tRNA->exon_end(2)."\t".$tRNA->exon_strand(2)."\t".$tRNA->exon_start(3)."\t".$tRNA->exon_end(3)."\t".$tRNA->exon_strand(3)."\t". $tRNA->position()."\t".$tRNA->isotype()."\t".$tRNA->anticodon()."\t"; for (my $i = 0; $i < scalar(@ar_ac_pos); $i++) { print $fh $ar_ac_pos[$i]->{rel_start}."-".$ar_ac_pos[$i]->{rel_end}.";"; } print $fh "\t"; for (my $i = 0; $i < scalar(@ar_introns); $i++) { print $fh $ar_introns[$i]->{rel_start}."-".$ar_introns[$i]->{rel_end}.",".$ar_introns[$i]->{start}."-".$ar_introns[$i]->{end}.",".$ar_introns[$i]->{type}.",".$ar_introns[$i]->{seq}.";"; } print $fh "\t"; print $fh $tRNA->model()."\t".$tRNA->score()."\t".$tRNA->mat_score()."\t".$tRNA->hmm_score()."\t".$tRNA->ss_score()."\t"; if (defined $cove) { print $fh $cove->{score}."\t".$cove->{mat_score}."\t".$cove->{hmm_score}."\t".$cove->{ss_score}."\t"; } else { print $fh "\t\t\t\t"; } if (defined $inf) { print $fh $inf->{score}."\t".$inf->{mat_score}."\t".$inf->{hmm_score}."\t".$inf->{ss_score}."\t"; } else { print $fh "\t\t\t\t"; } print $fh $tRNA->pseudo()."\t".$tRNA->trunc()."\t".$tRNA->category(). "\t".$tRNA->hit_source()."\t".$tRNA->src_seqid()."\t".$tRNA->src_seqlen()."\t".$tRNA->seq()."\t".$tRNA->mat_seq()."\t".$tRNA->ss()."\t".$tRNA->mat_ss()."\t".$tRNA->note()."\n"; } sub get_tRNA { my $self = shift; my $filepos = shift; my $tRNA = shift; my $fh = $self->{FILE_H}; $tRNA->clear(); seek($fh, $filepos, 0); my $line = <$fh>; chomp($line); my @columns = split(/\t/, $line, -1); $tRNA->seqname($columns[0]); $tRNA->ordered_seqname($columns[1]); $tRNA->id($columns[2]); $tRNA->tRNAscan_id($columns[3]); $tRNA->start($columns[4]); $tRNA->end($columns[5]); $tRNA->strand($columns[6]); $tRNA->exon_start(2, $columns[7]); $tRNA->exon_end(2, $columns[8]); $tRNA->exon_strand(2, $columns[9]); $tRNA->exon_start(3, $columns[10]); $tRNA->exon_end(3, $columns[11]); $tRNA->exon_strand(3, $columns[12]); $tRNA->position($columns[13]); $tRNA->isotype($columns[14]); $tRNA->anticodon($columns[15]); my @ar_ac_pos = split(/\;/, $columns[16]); for (my $i = 0; $i < scalar(@ar_ac_pos); $i++) { if ($ar_ac_pos[$i] =~ /^(\d+)-(\d+)$/) { $tRNA->add_ac_pos($1, $2); } } if ($columns[17] ne "") { my @ar_introns = split(/\;/, $columns[17]); for (my $i = 0; $i < scalar(@ar_introns); $i++) { my @parts = split(/\,/, $ar_introns[$i], -1); my ($rel_start, $rel_end, $start, $end) = (0, 0, 0, 0); if ($parts[0] =~ /^(\d+)-(\d+)$/) { $rel_start = $1; $rel_end = $2; } if ($parts[1] =~ /^(\d+)-(\d+)$/) { $start = $1; $end = $2; } $tRNA->add_intron($rel_start, $rel_end, $start, $end, $parts[2], $parts[3]); } } $tRNA->model($columns[18]); $tRNA->score($columns[19]); $tRNA->mat_score($columns[20]); $tRNA->hmm_score($columns[21]); $tRNA->ss_score($columns[22]); if ($columns[23] ne "") { $tRNA->set_domain_model("cove", $columns[23]); $tRNA->update_domain_model("cove", $columns[23], $columns[24], $columns[25], $columns[26]) } if ($columns[27] ne "") { $tRNA->set_domain_model("infernal", $columns[27]); $tRNA->update_domain_model("infernal", $columns[27], $columns[28], $columns[29], $columns[30]) } $tRNA->pseudo($columns[31]); $tRNA->trunc($columns[32]); $tRNA->category($columns[33]); $tRNA->hit_source($columns[34]); $tRNA->src_seqid($columns[35]); $tRNA->src_seqlen($columns[36]); $tRNA->seq($columns[37]); $tRNA->mat_seq($columns[38]); $tRNA->ss($columns[39]); $tRNA->mat_ss($columns[40]); $tRNA->note($columns[41]);} sub sort_records { my $self = shift; my $key = shift; if ($key eq "tRNAscan_id") { $self->build_tRNAscan_id_index(); } elsif ($key eq "tRNAscanSE_output") { $self->build_tRNAscanSE_output_index(); } elsif ($key eq "bed_output") { $self->sort_bed_output_index(); } } sub build_tRNAscan_id_index { my $self = shift; my $line = ""; my @columns = (); my $filepos = undef; my $record = []; my @indexes = (); if ($self->open_file("read")) { my $fh = $self->{FILE_H}; $line = <$fh>; $filepos = tell($fh); while ($line = <$fh>) { $record = []; @columns = split(/\t/, $line); push(@$record, $filepos); push(@$record, $columns[3]); push(@indexes, $record); $filepos = tell($fh); } $self->close_file(); } @{$self->{indexes}} = sort {$a->[1] cmp $b->[1]} @indexes; } sub build_tRNAscanSE_output_index { my $self = shift; my $line = ""; my @columns = (); my $filepos = undef; my $record = []; my @indexes = (); if ($self->open_file("read")) { my $fh = $self->{FILE_H}; $line = <$fh>; $filepos = tell($fh); while ($line = <$fh>) { $record = []; @columns = split(/\t/, $line); push(@$record, $filepos); push(@$record, $columns[6]); # strand push(@$record, $columns[1]); # ordered_seqname push(@$record, $columns[4]); # start push(@$record, $columns[5]); # end push(@indexes, $record); $filepos = tell($fh); } $self->close_file(); } @{$self->{indexes}} = sort sort_by_tRNAscanSE_output @indexes; } sub sort_bed_output_index { my $self = shift; @{$self->{indexes}} = sort sort_by_bed_output @{$self->{indexes}}; } sub sort_by_tRNAscanSE_output { if ((($a->[1] eq $b->[1]) && ($a->[1] eq "+")) || ($a->[1] ne $b->[1])) { return ($a->[2] <=> $b->[2] || $a->[1] cmp $b->[1] || $a->[3] <=> $b->[3]); } if (($a->[1] eq $b->[1]) && ($a->[1] eq "-")) { return ($a->[2] <=> $b->[2] || $b->[1] cmp $a->[1] || $b->[4] <=> $a->[4]); } } sub sort_by_bed_output { return ($a->[2] <=> $b->[2] || $a->[3] <=> $b->[3]); } sub bsearch_tRNAscan_id { my $self = shift; my $x = shift; my ($l, $u) = (0, @{$self->{indexes}} - 1); my $i; while ($l <= $u) { $i = int(($l + $u)/2); if ($self->{indexes}->[$i]->[1] lt $x) { $l = $i+1; } elsif ($self->{indexes}->[$i]->[1] gt $x) { $u = $i-1; } else { return $i; } } return -1; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/SprinzlAlign.pm0000644000543100007160000000742713137024337020270 0ustar pchanlowelab# tRNAscanSE/SprinzlAlign.pm # This class contains functions to align tRNAs for Sprinzl positioning. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::SprinzlAlign; use strict; use tRNAscanSE::tRNA; use tRNAscanSE::SprinzlPos; use tRNAscanSE::Configuration; require Exporter; our @ISA = qw(Exporter); our @EXPORT = qw(do_sprinzl_pos); sub do_sprinzl_pos { my ($global_vars, $tRNA, $clade) = @_; my $sprinzl = $global_vars->{sprinzl}; my @ar_sprinzl_pos = $sprinzl->sprinzl_pos(); my $cmalign_out = &align_tRNA($global_vars, $tRNA, $clade); my ($alignment, $ss) = &read_cmalign_out($cmalign_out); ($alignment, $ss) = &fix_alignment($alignment, $ss); $tRNA->sprinzl_align($alignment); $tRNA->sprinzl_ss($ss); $tRNA->map_sprinzl_pos(\@ar_sprinzl_pos); } sub align_tRNA { my ($global_vars, $tRNA, $clade) = @_; my $global_constants = $global_vars->{global_constants}; my $temp_dir = $global_constants->get("temp_dir"); my $infernal_dir = $global_constants->get("infernal_dir"); my $cmalign_bin = $infernal_dir."cmalign"; my $cm = $global_constants->get_subvalue("sprinzl_cm", lc($clade)); my $temp_fa = "$temp_dir/talign$$".".fa"; my $temp_out = "$temp_dir/talign$$".".out"; open(FA_FILE, ">$temp_fa") or die "Fail to open $temp_fa\n"; print FA_FILE ">".$tRNA->tRNAscan_id()."\n"; print FA_FILE $tRNA->mat_seq()."\n"; close(FA_FILE); my $cmd = $cmalign_bin." -g --notrunc --dnaout ".$cm." ".$temp_fa." > ".$temp_out; system($cmd); return $temp_out; } sub read_cmalign_out { my ($cmalign_out) = @_; my $line = ""; my $alignment = ""; my $ss = ""; open (FILE_IN, "$cmalign_out") or die "Fail to open $cmalign_out\n"; while ($line = ) { chomp($line); if ($line !~ /^#/) { if ($line =~ /^\S+\s+(\S+)$/) { $alignment .= $1; } } elsif ($line =~ /^#=GC SS_cons\s+(\S+)$/) { $ss .= $1; } } close (FILE_IN); return ($alignment, $ss); } sub fix_alignment { my ($alignment, $ss) = @_; my @bases = split(//, $alignment); my $alignment_mod = $alignment; my $ss_mod = $ss; my $last_ins = -999; my $ins_start = -1; my $ins_count = 0; my %ins = (); for (my $i = 0; $i < scalar(@bases); $i++) { if ($bases[$i] =~ /^[acgt]$/) { if ($last_ins != $i - 1) { if ($ins_start != -1) { $ins{$ins_start} = $ins_count; } $ins_start = $i; $ins_count = 0; } $ins_count++; $last_ins = $i; } } if ($ins_start != -1) { $ins{$ins_start} = $ins_count; } my $del_before_count = 0; my $del_after_count = 0; foreach $ins_start (sort keys %ins) { for (my $i = $ins_start - 1; $i >= 0; $i--) { if ($bases[$i] ne "-") { last; } else { $del_before_count++; } } for (my $i = $ins_start + $ins{$ins_start}; $i < scalar(@bases); $i++) { if ($bases[$i] ne "-") { last; } else { $del_after_count++; } } if ($del_before_count == $ins{$ins_start}) { for (my $i = $ins_start; $i < $ins_start + $ins{$ins_start}; $i++) { $bases[$i] = uc $bases[$i]; } splice(@bases, $ins_start - $ins{$ins_start}, $ins{$ins_start}); $alignment_mod = join("", @bases); $ss_mod = substr($ss, 0, $ins_start).substr($ss, $ins_start + $ins{$ins_start}); } elsif ($del_after_count == $ins{$ins_start}) { for (my $i = $ins_start; $i < $ins_start + $ins{$ins_start}; $i++) { $bases[$i] = uc $bases[$i]; } splice(@bases, $ins_start + $ins{$ins_start}, $ins{$ins_start}); $alignment_mod = join("", @bases); $ss_mod = substr($ss, 0, $ins_start).substr($ss, $ins_start + $ins{$ins_start}); } last; } return ($alignment_mod, $ss_mod); } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/GeneticCode.pm0000644000543100007160000002474713531561221020025 0ustar pchanlowelab# tRNAscanSE/GeneticCode.pm # This class describes the genetic codes used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::GeneticCode; use strict; use tRNAscanSE::Utils; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{undef_anticodon} = "NNN"; $self->{undef_isotype} = "Undet"; my @isotypes = ('Ala', 'Gly', 'Pro', 'Thr', 'Val', 'Ser', 'Arg', 'Leu', 'Phe','Asn', 'Lys', 'Asp', 'Glu', 'His', 'Gln', 'Ile', 'Met', 'Tyr', 'Supres', 'Cys', 'Trp', 'SelCys'); $self->{isotypes} = \@isotypes; # Amino acid -> Anti-codon list for printing out global tRNA summary my %ac_list = ( 'Ala' => [qw/AGC GGC CGC TGC/], 'Gly' => [qw/ACC GCC CCC TCC/], 'Pro' => [qw/AGG GGG CGG TGG/], 'Thr' => [qw/AGT GGT CGT TGT/], 'Val' => [qw/AAC GAC CAC TAC/], 'Ser' => [qw/AGA GGA CGA TGA ACT GCT/], 'Arg' => [qw/ACG GCG CCG TCG CCT TCT/], 'Leu' => [qw/AAG GAG CAG TAG CAA TAA/], 'Phe' => [qw/AAA GAA     /], 'Asn' => [qw/ATT GTT     /], 'Lys' => [qw/    CTT TTT/], 'Asp' => [qw/ATC GTC     /], 'Glu' => [qw/    CTC TTC/], 'His' => [qw/ATG GTG     /], 'Gln' => [qw/    CTG TTG/], 'Tyr' => [qw/ATA GTA     /], 'Supres' => [qw/  CTA TTA TCA/], 'Ile' => [qw/AAT GAT CAT TAT/], 'Met' => [qw/    CAT  /], 'Cys' => [qw/ACA GCA     /], 'Trp' => [qw/    CCA  /], 'SelCys' => [qw/      TCA/] ); $self->{ac_list} = \%ac_list; $self->{aa_list} = { 'AGC'=>'Ala', 'GGC'=>'Ala', 'CGC'=>'Ala', 'TGC'=>'Ala', 'ACC'=>'Gly', 'GCC'=>'Gly', 'CCC'=>'Gly', 'TCC'=>'Gly', 'AGG'=>'Pro', 'GGG'=>'Pro', 'CGG'=>'Pro', 'TGG'=>'Pro', 'AGT'=>'Thr', 'GGT'=>'Thr', 'CGT'=>'Thr', 'TGT'=>'Thr', 'AAC'=>'Val', 'GAC'=>'Val', 'CAC'=>'Val', 'TAC'=>'Val', 'AGA'=>'Ser', 'GGA'=>'Ser', 'CGA'=>'Ser', 'TGA'=>'Ser', 'ACT'=>'Ser', 'GCT'=>'Ser', 'ACG'=>'Arg', 'GCG'=>'Arg', 'CCG'=>'Arg', 'TCG'=>'Arg', 'CCT'=>'Arg', 'TCT'=>'Arg', 'AAG'=>'Leu', 'GAG'=>'Leu', 'CAG'=>'Leu', 'TAG'=>'Leu', 'CAA'=>'Leu', 'TAA'=>'Leu', 'AAA'=>'Phe', 'GAA'=>'Phe', 'ATT'=>'Asn', 'GTT'=>'Asn', 'CTT'=>'Lys', 'TTT'=>'Lys', 'ATC'=>'Asp', 'GTC'=>'Asp', 'CTC'=>'Glu', 'TTC'=>'Glu', 'ATG'=>'His', 'GTG'=>'His', 'CTG'=>'Gln', 'TTG'=>'Gln', 'ATA'=>'Tyr', 'GTA'=>'Tyr', 'CTA'=>'Supres', 'TTA'=>'Supres', 'AAT'=>'Ile', 'GAT'=>'Ile', 'TAT'=>'Ile', 'CAT'=>'Met', 'ACA'=>'Cys', 'GCA'=>'Cys', 'CCA'=>'Trp', 'TCA'=>'SelCys', '???'=>'Undet', 'NNN'=>'Undet' }; $self->{vert_mito_aa_list} = { 'TGC'=>'Ala', 'TCC'=>'Gly', 'TGG'=>'Pro', 'TGT'=>'Thr', 'TAC'=>'Val', 'TGA'=>'Ser', 'GCT'=>'Ser', 'TCG'=>'Arg', 'TAG'=>'Leu', 'TAA'=>'Leu', 'GAA'=>'Phe', 'GTT'=>'Asn', 'TTT'=>'Lys', 'GTC'=>'Asp', 'TTC'=>'Glu', 'GTG'=>'His', 'TTG'=>'Gln', 'GTA'=>'Tyr', 'GAT'=>'Ile', 'TAT'=>'Met', 'CAT'=>'Met', 'GCA'=>'Cys', 'TCA'=>'Trp' }; $self->{trans_map} = +{}; $self->{one_let_trans_map} = +{}; } sub undef_anticodon { my $self = shift; return $self->{undef_anticodon}; } sub undef_isotype { my $self = shift; return $self->{undef_isotype}; } sub isotypes { my $self = shift; return $self->{isotypes}; } sub ac_list { my $self = shift; return $self->{ac_list}; } sub aa_list { my $self = shift; return $self->{aa_list}; } sub get_isotype { my $self = shift; my $ac = shift; my $isotype = ""; if (defined $self->{aa_list}->{$ac}) { $isotype = $self->{aa_list}->{$ac}; } return $isotype; } sub one_let_trans_map { my $self = shift; return $self->{one_let_trans_map}; } sub read_transl_table { my $self = shift; my $opts = shift; my $alt_gcode = $opts->alt_gcode(); my $gc_file = $opts->gc_file(); my %ambig_trans_map = (); my %alt_trans_map = (); my ($acodon, @expanded_set, $expanded_ac, $gc_file_path); # Read in default genetic code table (may contain ambiguous bases) at # end of this source file while () { if ((/^[^\#]/) && (/^([ACGTUNRYSWMKBDHV]{3,3})\s+(\S+)\s+(\S)/i)) { $acodon = uc($1); $ambig_trans_map{&rev_comp_seq($acodon)} = $2; $self->{one_let_trans_map}->{$2} = $3; } } $self->{one_let_trans_map}->{$self->{undef_isotype}} = "?"; $self->{one_let_trans_map}->{"SeC(p)"} = "Z"; $self->{one_let_trans_map}->{"SeC(e)"} = "Z"; # Convert any ambiguous bases to make all non-ambigous codons # and save translated amino acid @expanded_set = (); foreach $acodon (sort keys(%ambig_trans_map)) { push(@expanded_set, &expand_ambig($acodon)); foreach $expanded_ac (@expanded_set) { $self->{trans_map}->{$expanded_ac} = $ambig_trans_map{$acodon}; } @expanded_set = (); } if ($alt_gcode) { if (-r $gc_file) { $gc_file_path = $gc_file; } elsif (-r "/usr/local/lib/tRNAscanSE/".$gc_file) { $gc_file_path = "/usr/local/lib/tRNAscanSE/".$gc_file; } else { die "FATAL: Could not find $gc_file translation codon file\n\n"; } open (GC_TABLE, "$gc_file_path") || die "FATAL: Could not find $gc_file translation codon file\n\n"; # Read in genetic code table (may contain ambiguous bases) while () { if ((/^[^\#]/) && (/^([ACGTUNRYSWMKBDHV]{3,3})\s+(\S+)\s+(\S)/i)) { $acodon = uc($1); $alt_trans_map{&rev_comp_seq($acodon)} = $2; $self->{one_let_trans_map}->{$2} = $3; } } close GC_TABLE; # Convert any ambiguous bases to make all non-ambigous codons # and save translated amino acid @expanded_set = (); foreach $acodon (sort keys(%alt_trans_map)) { push(@expanded_set, &expand_ambig($acodon)); foreach $expanded_ac (@expanded_set) { $self->{trans_map}->{$expanded_ac} = $alt_trans_map{$acodon}; } @expanded_set = (); } } } sub get_tRNA_type { my $self = shift; my $cm = shift; my $ac = shift; # anticodon to be decoded my $cm_file = shift; my $model = shift; my $cove_mode = shift; my $Pselc_cm_file_path = $cm->Pselc_cm_file_path(); my $Eselc_cm_file_path = $cm->Eselc_cm_file_path(); my ($prev_type,$type); if ($ac eq $self->{undef_anticodon}) { return $self->{undef_isotype}; } elsif ($cm_file eq $Pselc_cm_file_path) { return 'SeC'; } elsif ($cm_file eq $Eselc_cm_file_path) { return 'SeC'; } else { $prev_type = 'INIT'; foreach my $exp_codon (&expand_ambig($ac)) { $type = $self->{trans_map}->{$exp_codon}; if ($type eq "SeC" and $model ne "SeC" and !$cove_mode) { $type = "Sup"; } if (($type ne $prev_type) && ($prev_type ne 'INIT')) { return $self->{undef_isotype}; } $prev_type = $type; } return $type; } } sub get_vert_mito_type { my $self = shift; my ($ac) = @_; my $type = ""; if (defined $self->{vert_mito_aa_list}->{$ac}) { $type = $self->{vert_mito_aa_list}->{$ac}; } return $type; } sub expand_ambig { my ($ac) = @_; $ac = " ".$ac." "; while (index($ac, 'N') != -1) { $ac =~ s/(.*)\s(\S*)N(\S*)\s(.*)/$1 $2A$3 $2C$3 $2G$3 $2T$3 $4/g; } &expand2(\$ac, 'Y', 'C', 'T'); &expand2(\$ac, 'R', 'A', 'G'); &expand2(\$ac, 'W', 'A', 'T'); &expand2(\$ac, 'S', 'C', 'G'); &expand2(\$ac, 'M', 'A', 'C'); &expand2(\$ac, 'K', 'G', 'T'); &expand3(\$ac, 'V', 'A', 'C', 'G'); &expand3(\$ac, 'B', 'C', 'G', 'T'); &expand3(\$ac, 'H', 'A', 'C', 'T'); &expand3(\$ac, 'D', 'A', 'G', 'T'); $ac = substr($ac, 1); return (split(/ /, $ac)); } sub expand2 { my ($acodon, $ambig_base, $sub1, $sub2) = @_; while (index($$acodon, $ambig_base) != -1) { $$acodon =~ s/(.*)\s(\S*)$ambig_base(\S*)\s(.*)/$1 $2$sub1$3 $2$sub2$3 $4/g; } } sub expand3 { my($acodon, $ambig_base, $sub1, $sub2, $sub3) = @_; while (index($$acodon, $ambig_base) != -1) { $$acodon =~ s/(.*)\s(\S*)$ambig_base(\S*)\s(.*)/$1 $2$sub1$3 $2$sub2$3 $2$sub3$3 $4/g; } } 1; __DATA__ GCN Ala A TGY Cys C GAY Asp D GAR Glu E TTY Phe F GGN Gly G CAY His H ATH Ile I AAR Lys K TTR Leu L CTN Leu L ATG Met M AAY Asn N CCN Pro P CAR Gln Q AGR Arg R CGN Arg R AGY Ser S TCN Ser S ACN Thr T GTN Val V TGG Trp W TAY Tyr Y TAR Sup ? TGA SeC Z tRNAscan-SE-2.0/lib/tRNAscanSE/Options.pm0000644000543100007160000006074213534334057017312 0ustar pchanlowelab# tRNAscanSE/Options.pm # This class defines options used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::Options; use strict; use tRNAscanSE::Utils; use tRNAscanSE::CM; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{fafile} = ""; $self->{fasta_file} = ""; # input sequence file $self->{multiple_files} = 0; # multiple input sequence files $self->{out_file} = "-"; # output result file -- send to # stdout ("-") by default $self->{results_to_stdout} = 1; # send results to stdout by default $self->{ace_output} = 0; # output in ACeDB format if non-zero $self->{brief_output} = 0; # don't print tabular output column headers # if non-zero $self->{quiet_mode} = 0; # don't print credits & selected run options # if non-zero $self->{display_progress} = 0; # print program progress info if non-zero $self->{save_progress} = 0; # save progress to log file if non-zero $self->{log_file} = ""; # name of log file $self->{seq_key} = ""; # require seq names to match this key $self->{raw_seq_key} = ""; # unmodified user-input key $self->{start_at_key} = 0; # read all seqs after finding seqname=KEY? $self->{tscan_mode} = 1; # run tRNAscan if non-zero $self->{eufind_mode} = 1; # run eufindtRNA (pavesi) if non-zero $self->{strict_params} = 1; # use original strict tRNAscan params if non-zero $self->{infernal_fp} = 0; # run infernal hmm as first pass $self->{CM_mode} = "cove"; # run covariance model search in second pass # cove - run Cove if non-zero # infernal - run Infernal if non-zero # run Infernal by default $self->{hmm_filter} = 0; # run infernal with hmm filter in second pass $self->{second_pass_label} = "Cove"; # Second scan pass label: Cove by default $self->{search_mode} = ""; # tRNA search mode # euk - run eukaryotic cov model if set # bacteria - run covariance model for bacteria if set # archaea - run archaea cov model if set # organelle - run general cov model # general - run general cov model (combines tRNAs from all 3 domains) # mito mammal - run mammalian mito cov models # mito vert - run vertebrate mito cov models # metagenome # numt $self->{no_isotype} = 0; # flag for disabling isotype specific cm scan $self->{mito_model} = ""; # mito CM for isotype specific scan $self->{org_mode} = 0; # run in organellar mode # run eukaryotic model by default $self->{alt_gcode} = 0; # use alternate genetic translation table # file if non-zero $self->{gc_file} = ""; # alternate transl table file $self->{save_stats} = 0; # save statistics for search $self->{stats_file} = ""; $self->{detail} = 0; # display detailed prediction info $self->{save_odd_struct} = 0; # save structures for which Cove # was unable to determine anticodon $self->{odd_struct_file} = ""; $self->{save_all_struct} = 0; # save secondary structures if nonzero $self->{bed_file} = ""; # bed file $self->{output_fasta_file} = ""; # predicted tRNA fasta file $self->{all_struct_file} = ""; # sec struct file, set with -f option $self->{isotype_specific_file} = ""; # isotype specific result file $self->{split_fragment_file} = ""; # split fragment file, set with --frag option $self->{save_verbose} = 0; # save verbose output from tRNAscan $self->{verb_file} = ""; $self->{save_firstpass_res} = 0; # save tabular tRNAscan results $self->{firstpass_result_file} = ""; $self->{firstpass_flanking_file} = ""; $self->{secondpass_int_result_file} = ""; $self->{isotype_int_result_file} = ""; $self->{truncated_int_result_file} = ""; $self->{use_prev_ts_run} = 0; # specify result file from previous # tRNA search for Cove-confirmation $self->{default_Padding} = 10; $self->{padding} = $self->{default_Padding}; # pad both ends of first-pass hits with this # many extra bases before passing to Cove $self->{save_falsepos} = 0; # save false positive tRNAs in # fasta file $self->{falsepos_file} = ""; $self->{save_missed} = 0; # save seqs without a hit $self->{missed_seq_file} = ""; $self->{save_source} = 0; # save source of first-pass hit $self->{output_codon} = 0; # output tRNA codon instead of anticodon # (off by default) $self->{infernal_score} = 0; # flag to output infernal score # $self->{use_orig_cm} = 0; # use original covariance model that # # contains tRNAS from all three domains $self->{def_max_int_len} = 200; # default MAX intron+variable loop region size # used in EufindtRNA $self->{max_int_len} = $self->{def_max_int_len}; $self->{prompt_for_overwrite} = 1; # prompt user before overwriting a pre-existing # output file, disabled with -Q option } sub fafile { my $self = shift; if (@_) { $self->{fafile} = shift; } return $self->{fafile}; } sub fasta_file { my $self = shift; if (@_) { $self->{fasta_file} = shift; } return $self->{fasta_file}; } sub multiple_files { my $self = shift; if (@_) { $self->{multiple_files} = shift; } return $self->{multiple_files}; } sub out_file { my $self = shift; if (@_) { $self->{out_file} = shift; } return $self->{out_file}; } sub results_to_stdout { my $self = shift; if (@_) { $self->{results_to_stdout} = shift; } return $self->{results_to_stdout}; } sub ace_output { my $self = shift; if (@_) { $self->{ace_output} = shift; } return $self->{ace_output}; } sub brief_output { my $self = shift; if (@_) { $self->{brief_output} = shift; } return $self->{brief_output}; } sub quiet_mode { my $self = shift; if (@_) { $self->{quiet_mode} = shift; } return $self->{quiet_mode}; } sub display_progress { my $self = shift; if (@_) { $self->{display_progress} = shift; } return $self->{display_progress}; } sub save_progress { my $self = shift; if (@_) { $self->{save_progress} = shift; } return $self->{save_progress}; } sub log_file { my $self = shift; if (@_) { $self->{log_file} = shift; } return $self->{log_file}; } sub seq_key { my $self = shift; if (@_) { $self->{seq_key} = shift; } return $self->{seq_key}; } sub raw_seq_key { my $self = shift; if (@_) { $self->{raw_seq_key} = shift; } return $self->{raw_seq_key}; } sub start_at_key { my $self = shift; if (@_) { $self->{start_at_key} = shift; } return $self->{start_at_key}; } sub tscan_mode { my $self = shift; if (@_) { $self->{tscan_mode} = shift; } return $self->{tscan_mode}; } sub eufind_mode { my $self = shift; if (@_) { $self->{eufind_mode} = shift; } return $self->{eufind_mode}; } sub strict_params { my $self = shift; if (@_) { $self->{strict_params} = shift; } return $self->{strict_params}; } sub infernal_fp { my $self = shift; if (@_) { $self->{infernal_fp} = shift; } return $self->{infernal_fp}; } sub CM_mode { my $self = shift; if (@_) { $self->{CM_mode} = shift; } return $self->{CM_mode}; } sub cove_mode { my $self = shift; return ($self->{CM_mode} eq 'cove'); } sub infernal_mode { my $self = shift; return ($self->{CM_mode} eq 'infernal'); } sub hmm_filter { my $self = shift; if (@_) { $self->{hmm_filter} = shift; } return $self->{hmm_filter}; } sub second_pass_label { my $self = shift; if (@_) { $self->{second_pass_label} = shift; } return $self->{second_pass_label}; } sub search_mode { my $self = shift; if (@_) { $self->{search_mode} = shift; } return $self->{search_mode}; } sub euk_mode { my $self = shift; return ($self->{search_mode} eq 'euk'); } sub bact_mode { my $self = shift; return ($self->{search_mode} eq 'bacteria'); } sub arch_mode { my $self = shift; return ($self->{search_mode} eq 'archaea'); } sub mito_mammal_mode { my $self = shift; return ($self->mito_mode() and $self->{mito_model} eq 'mammal'); } sub mito_vert_mode { my $self = shift; return ($self->mito_mode() and $self->{mito_model} eq 'vert'); } sub mito_mode { my $self = shift; return ($self->{search_mode} eq 'mito'); } sub metagenome_mode { my $self = shift; return ($self->{search_mode} eq 'metagenome'); } sub numt_mode { my $self = shift; return ($self->{search_mode} eq 'numt'); } sub alternate_mode { my $self = shift; return ($self->{search_mode} eq 'alt'); } sub no_isotype { my $self = shift; if (@_) { $self->{no_isotype} = shift; } return $self->{no_isotype}; } sub mito_model { my $self = shift; if (@_) { $self->{mito_model} = shift; } return $self->{mito_model}; } sub organelle_mode { my $self = shift; return ($self->{search_mode} eq 'organelle'); } sub general_mode { my $self = shift; return ($self->{search_mode} eq 'general'); } sub org_mode { my $self = shift; if (@_) { $self->{org_mode} = shift; } return $self->{org_mode}; } sub alt_gcode { my $self = shift; if (@_) { $self->{alt_gcode} = shift; } return $self->{alt_gcode}; } sub gc_file { my $self = shift; if (@_) { $self->{gc_file} = shift; } return $self->{gc_file}; } sub save_stats { my $self = shift; if (@_) { $self->{save_stats} = shift; } return $self->{save_stats}; } sub stats_file { my $self = shift; if (@_) { $self->{stats_file} = shift; } return $self->{stats_file}; } sub save_odd_struct { my $self = shift; if (@_) { $self->{save_odd_struct} = shift; } return $self->{save_odd_struct}; } sub odd_struct_file { my $self = shift; if (@_) { $self->{odd_struct_file} = shift; } return $self->{odd_struct_file}; } sub save_all_struct { my $self = shift; if (@_) { $self->{save_all_struct} = shift; } return $self->{save_all_struct}; } sub all_struct_file { my $self = shift; if (@_) { $self->{all_struct_file} = shift; } return $self->{all_struct_file}; } sub bed_file { my $self = shift; if (@_) { $self->{bed_file} = shift; } return $self->{bed_file}; } sub output_fasta_file { my $self = shift; if (@_) { $self->{output_fasta_file} = shift; } return $self->{output_fasta_file}; } sub isotype_specific_file { my $self = shift; if (@_) { $self->{isotype_specific_file} = shift; } return $self->{isotype_specific_file}; } sub split_fragment_file { my $self = shift; if (@_) { $self->{split_fragment_file} = shift; } return $self->{split_fragment_file}; } sub save_verbose { my $self = shift; if (@_) { $self->{save_verbose} = shift; } return $self->{save_verbose}; } sub verb_file { my $self = shift; if (@_) { $self->{verb_file} = shift; } return $self->{verb_file}; } sub save_firstpass_res { my $self = shift; if (@_) { $self->{save_firstpass_res} = shift; } return $self->{save_firstpass_res}; } sub firstpass_result_file { my $self = shift; if (@_) { $self->{firstpass_result_file} = shift; } return $self->{firstpass_result_file}; } sub firstpass_flanking_file { my $self = shift; if (@_) { $self->{firstpass_flanking_file} = shift; } return $self->{firstpass_flanking_file}; } sub secondpass_int_result_file { my $self = shift; if (@_) { $self->{secondpass_int_result_file} = shift; } return $self->{secondpass_int_result_file}; } sub isotype_int_result_file { my $self = shift; if (@_) { $self->{isotype_int_result_file} = shift; } return $self->{isotype_int_result_file}; } sub truncated_int_result_file { my $self = shift; if (@_) { $self->{truncated_int_result_file} = shift; } return $self->{truncated_int_result_file}; } sub use_prev_ts_run { my $self = shift; if (@_) { $self->{use_prev_ts_run} = shift; } return $self->{use_prev_ts_run}; } sub default_Padding { my $self = shift; if (@_) { $self->{default_Padding} = shift; } return $self->{default_Padding}; } sub padding { my $self = shift; if (@_) { $self->{padding} = shift; } return $self->{padding}; } sub save_falsepos { my $self = shift; if (@_) { $self->{save_falsepos} = shift; } return $self->{save_falsepos}; } sub falsepos_file { my $self = shift; if (@_) { $self->{falsepos_file} = shift; } return $self->{falsepos_file}; } sub save_missed { my $self = shift; if (@_) { $self->{save_missed} = shift; } return $self->{save_missed}; } sub missed_seq_file { my $self = shift; if (@_) { $self->{missed_seq_file} = shift; } return $self->{missed_seq_file}; } sub save_source { my $self = shift; if (@_) { $self->{save_source} = shift; } return $self->{save_source}; } sub output_codon { my $self = shift; if (@_) { $self->{output_codon} = shift; } return $self->{output_codon}; } sub detail { my $self = shift; if (@_) { $self->{detail} = shift; } return $self->{detail}; } sub infernal_score { my $self = shift; if (@_) { $self->{infernal_score} = shift; } return $self->{infernal_score}; } sub def_max_int_len { my $self = shift; if (@_) { $self->{def_max_int_len} = shift; } return $self->{def_max_int_len}; } sub max_int_len { my $self = shift; if (@_) { $self->{max_int_len} = shift; } return $self->{max_int_len}; } sub prompt_for_overwrite { my $self = shift; if (@_) { $self->{prompt_for_overwrite} = shift; } return $self->{prompt_for_overwrite}; } sub display_run_options { my $self = shift; my ($cm, $tscan, $eufind, $global_constants, $FHAND) = @_; print $FHAND ('-' x 60,"\n", "Sequence file(s) to search: ",join(', ',@ARGV),"\n"); if ($self->{seq_key} ne '\S*') { if ($self->{start_at_key}) { print $FHAND "Starting at sequence name: $self->{raw_seq_key}\n"; } else { print $FHAND "Search only names matching: $self->{raw_seq_key}\n"; } } print $FHAND "Search Mode: "; if ($self->euk_mode()) { print $FHAND "Eukaryotic"; } elsif ($self->bact_mode()) { print $FHAND "Bacterial"; } elsif ($self->arch_mode()) { print $FHAND "Archaeal"; } elsif ($self->mito_mammal_mode()) { print $FHAND "Mitochondrial in mammals"; } elsif ($self->mito_vert_mode()) { print $FHAND "Mitochondrial in vertebrates"; } elsif ($self->organelle_mode()) { print $FHAND "Organellar"; } elsif ($self->general_mode()) { print $FHAND "General"; } elsif ($self->metagenome_mode()) { print $FHAND "Metagenome"; } elsif ($self->numt_mode()) { print $FHAND "Numt"; } else { print $FHAND "Eukaryotic"; } print $FHAND "\n"; print $FHAND "Results written to: ", &print_filename($self->{out_file}),"\n"; print $FHAND "Output format: "; if ($self->{ace_output}) { print $FHAND "ACeDB\n"; } else { print $FHAND "Tabular\n"; } print $FHAND "Searching with: "; if ($self->{eufind_mode}) { if ($self->{tscan_mode}) { if ($self->{CM_mode} =~ /infernal|cove/) { print $FHAND "tRNAscan + EufindtRNA -> $self->{second_pass_label}\n"; } else { print $FHAND "tRNAscan + EufindtRNA\n"; } } elsif ($self->{CM_mode} =~ /infernal|cove/) { print $FHAND "EufindtRNA->$self->{second_pass_label}\n"; } else { print $FHAND "EufindtRNA only\n"; } } elsif ($self->{tscan_mode}) { if ($self->{CM_mode} =~ /infernal|cove/) { print $FHAND "tRNAscan->$self->{second_pass_label}\n"; } else { print $FHAND "tRNAscan only\n"; } } elsif ($self->{infernal_fp}) { if ($self->{CM_mode} =~ /infernal|cove/) { print $FHAND "Infernal First Pass->$self->{second_pass_label}\n"; } else { print $FHAND "Infernal First Pass only\n"; } } else { print $FHAND "$self->{second_pass_label} single-pass scan\n"; } if ($self->{CM_mode} eq "infernal" and !$self->{infernal_fp}) { if ($self->{hmm_filter}) { print $FHAND " Fast mode\n"; } else { print $FHAND " Maximum sensitivity mode\n"; } } if (!$self->{no_isotype} and ($self->euk_mode() or $self->bact_mode() or $self->arch_mode())) { print $FHAND "Isotype-specific model scan: Yes\n"; } elsif ($self->{no_isotype} and ($self->euk_mode() or $self->bact_mode() or $self->arch_mode())) { print $FHAND "Isotype-specific model scan: No\n"; } if ($self->euk_mode() and $self->mito_model() ne "") { print $FHAND "Mito isotype model scan: ".$self->mito_model()."\n"; } if ($cm->CM_check_for_introns()) { print $FHAND "Scan for noncanonical introns\n"; } if ($cm->CM_check_for_split_halves()) { print $FHAND "Scan for fragments of split tRNAs\n"; } my $ct = 0; my %cms = $cm->main_cm_file_path(); foreach my $cur_cm (sort keys %cms) { $ct++; if ($ct == 1) { print $FHAND "Covariance model: ".$cms{$cur_cm}."\n"; } else { print $FHAND " ".$cms{$cur_cm}."\n"; } } # if ($self->mito_mode()) # { # if ($cm->organelle_cm_cutoff() != $global_constants->get("organelle_cm_cutoff")) # { # print $FHAND "tRNA covariance model search \n"." cutoff score: ".$cm->organelle_cm_cutoff()."\n"; # } # } # else # { if ($cm->cm_cutoff() != $global_constants->get("cm_cutoff")) { print $FHAND "tRNA covariance model search \n"." cutoff score: ".$cm->cm_cutoff()."\n"; } # } if ($self->{use_prev_ts_run}) { print $FHAND "Using previous\n", "tabular output file: $self->{firstpass_result_file}\n"; } if ($self->{tscan_mode}) { print $FHAND "tRNAscan parameters: "; if ($self->{strict_params}) { print $FHAND "Strict\n"; } else { print $FHAND "Relaxed\n"; } } if ($self->{eufind_mode}) { print $FHAND "EufindtRNA parameters: "; if ($eufind->eufind_params() eq $global_constants->get_subvalue("eufind", "relaxed_param")) { print $FHAND "Relaxed (Int Cutoff= ".$eufind->eufind_intscore().")\n"; } elsif ($eufind->eufind_params() eq "") { print $FHAND "Normal\n"; } elsif ($eufind->eufind_params() eq $global_constants->get_subvalue("eufind", "strict_param")) { print $FHAND "Strict\n"; } else { print $FHAND "?\n"; } } if ($self->{infernal_fp}) { print $FHAND "Infernal first pass cutoff score: ".$cm->infernal_fp_cutoff()."\n"; } if ($self->{padding} != $self->{default_Padding}) { print $FHAND "First-pass tRNA hit padding: $self->{padding} bp\n"; } if ($self->{alt_gcode}) { print $FHAND "Alternate transl code used: ", "from file $self->{gc_file}\n"; } print $FHAND "\nTemporary directory: ".$global_constants->get("temp_dir")."\n"; if ($self->{save_all_struct}) { print $FHAND "tRNA secondary structure\n", " predictions saved to: "; if ($self->{all_struct_file} eq "-") { print $FHAND "Standard output\n"; } else { print $FHAND "$self->{all_struct_file}\n"; } } if ($self->{bed_file} ne "") { print $FHAND "tRNA predictions saved to: "; if ($self->{bed_file} eq "-") { print $FHAND "Standard output\n"; } else { print $FHAND "$self->{bed_file}\n"; } } if ($self->{output_fasta_file} ne "") { print $FHAND "Predicted tRNA sequences\n", " saved to: "; if ($self->{output_fasta_file} eq "-") { print $FHAND "Standard output\n"; } else { print $FHAND "$self->{output_fasta_file}\n"; } } if ($self->{isotype_specific_file} ne "") { print $FHAND "Isotype specific\n", " predictions saved to: "; if ($self->{isotype_specific_file} eq "-") { print $FHAND "Standard output\n"; } else { print $FHAND "$self->{isotype_specific_file}\n"; } } if ($self->{split_fragment_file} ne "") { print $FHAND "Split tRNA fragment\n", " predictions saved to: "; if ($self->{split_fragment_file} eq "-") { print $FHAND "Standard output\n"; } else { print $FHAND "$self->{split_fragment_file}\n"; } } if ($self->{save_odd_struct}) { print $FHAND "Sec structures for tRNAs\n", " with no anticodon predictn: $self->{odd_struct_file}\n"; } if ($self->{save_firstpass_res}) { print $FHAND "First-pass results saved in: ", "$self->{firstpass_result_file}\n"; } if ($self->{log_file} ne "") { print $FHAND "Search log saved in: $self->{log_file}\n"; } if ($self->{save_stats}) { print $FHAND "Search statistics saved in: $self->{stats_file}\n"; } if ($self->{save_falsepos}) { print $FHAND "False positives saved in: $self->{falsepos_file}\n"; } if ($self->{save_missed}) { print $FHAND "Seqs with 0 hits saved in: $self->{missed_seq_file}\n"; } if ($cm->skip_pseudo_filter() | $cm->get_hmm_score() | $tscan->keep_tscan_repeats()) { print $FHAND "\n"; } if ($self->{max_int_len} != $self->{def_max_int_len}) { print $FHAND "Max intron + var. length: $self->{max_int_len}\n"; } if ($cm->skip_pseudo_filter()) { print $FHAND "Pseudogene checking disabled\n"; } if ($cm->get_hmm_score()) { print $FHAND "Reporting HMM/2' structure score breakdown\n"; } if ($tscan->keep_tscan_repeats()) { print $FHAND "Redundant tRNAscan hits not merged\n"; } print $FHAND ('-' x 60,"\n\n"); } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/Eufind.pm0000644000543100007160000001752013053260455017061 0ustar pchanlowelab# tRNAscanSE/Eufind.pm # This class contains parameters and functions for running eufindtRNA used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::Eufind; use strict; use tRNAscanSE::Configuration; use tRNAscanSE::Utils; use tRNAscanSE::ArraytRNA; use tRNAscanSE::tRNA; use tRNAscanSE::Stats; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{eufind_bin} = "eufindtRNA"; $self->{eufind_mask} = 2; # Bit-wise masks for source of tRNA hits } sub eufind_params { my $self = shift; if (@_) { $self->{eufind_params} = shift; } return $self->{eufind_params}; } sub eufind_intscore { my $self = shift; if (@_) { $self->{eufind_intscore} = shift; } return $self->{eufind_intscore}; } sub eufind_bin { my $self = shift; if (@_) { $self->{eufind_bin} = shift; } return $self->{eufind_bin}; } sub eufind_mask { my $self = shift; return $self->{eufind_mask}; } sub set_defaults { my $self = shift; my $global_vars = shift; my $global_constants = $global_vars->{global_constants}; $self->{eufind_params} = $global_constants->get_subvalue("eufind", "relaxed_param"); $self->{eufind_intscore} = $global_constants->get_subvalue("eufind", "intscore"); } sub set_bin { my $self = shift; my $bindir = shift; if ($^O =~ /^MSWin/) { $self->{eufind_bin} .= ".exe"; } if (!(-x $self->{eufind_bin})) { $self->{eufind_bin} = $bindir."/".$self->{eufind_bin}; if (!(-x $self->{eufind_bin})) { die "FATAL: Unable to find ".$self->{eufind_bin}." executable\n\n"; } } } sub run_eufind { my $self = shift; my ($tmp_fa, $start_index, $max_int_len, $seq_name) = @_; my $eufind_bin = $self->{eufind_bin}; my $eufind_intscore = $self->{eufind_intscore}; my $eufind_params = $self->{eufind_params}; # run default Eufind using selected param set my $eufind_output = `$eufind_bin -i $start_index -F -I $eufind_intscore -l $max_int_len $eufind_params $tmp_fa`; if (&error_exit_status("EufindtRNA",$seq_name)) { $eufind_output = ""; } return $eufind_output; } sub process_Eufind_hits { my $self = shift; my ($global_vars, $eufind_output) = @_; my $global_constants = $global_vars->{global_constants}; my $fp_tRNAs = $global_vars->{fp_tRNAs}; my $stats = $global_vars->{stats}; my $trna = undef; my $i = 0; my (@eufind_lines) = split(/\n/, $eufind_output); foreach (@eufind_lines) { if (/^(\S+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(\S+)\s+(\S+)\s+(\d+)\s+(\d+)\s+(\S+)/o) { $trna = tRNAscanSE::tRNA->new; $trna->seqname($1); # $trnact = $2; $trna->start($3); $trna->end($4); $trna->isotype($5); $trna->anticodon($6); $trna->score($9); if ($trna->start() < $trna->end()) { $trna->position($trna->start()); $trna->strand("+"); } else { $trna->position($global_constants->get("really_big_number") - $trna->start() + 1); $trna->strand("-"); } if ($trna->start() == $trna->end()) { print STDERR "Error reading EufindtRNA results: tRNA of length 0"; } if (!$self->merge_repeat_hit($global_vars->{stats}, $global_vars->{fp_tRNAs}, $trna)) { # insert non-redundant hit in order # 'Merge_repeat_hits' depends on list being in order $i = 0; while (($i < $fp_tRNAs->get_count()) && ($fp_tRNAs->get($i)->position() < $trna->position())) { $i++; } $trna->hit_source($self->{eufind_mask}); $fp_tRNAs->insert($trna, $i); $stats->increment_trnatotal(); } } } } # check current hit for redundancy against all previous hits in hitlist # # if it IS a repeat, merge it with overlapping hit and return 1 # if it doesn't overlap with any hits, return 0 sub merge_repeat_hit { my $self = shift; my ($stats, $fp_tRNAs, $trna) = @_; for (my $i = 0; $i < $fp_tRNAs->get_count(); $i++) { if ($trna->strand() eq "+") { if (($fp_tRNAs->get($i)->strand() eq "+") && (&seg_overlap($trna->start(), $trna->end(), $fp_tRNAs->get($i)->start(), $fp_tRNAs->get($i)->end()))) { $fp_tRNAs->get($i)->start(&min($trna->start(), $fp_tRNAs->get($i)->start())); $fp_tRNAs->get($i)->end(&max($trna->end(), $fp_tRNAs->get($i)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $self->{eufind_mask}); $fp_tRNAs->get($i)->isotype($trna->isotype()); $fp_tRNAs->get($i)->score($trna->score()); # check to see if extended endpoint overlaps i+1 hit's start boundary # if so, combine hit[i] and hit[i+1] into one hit and delete hit[i+1] if (($i != ($fp_tRNAs->get_count() - 1)) and ($fp_tRNAs->get($i+1)->strand() eq "+") and ($fp_tRNAs->get($i)->end() >= $fp_tRNAs->get($i+1)->start())) { $fp_tRNAs->get($i)->end(&max($fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i+1)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $fp_tRNAs->get($i+1)->hit_source()); # splice(@$r_hit_list,$i+1,1); # toss out overlapping hit $fp_tRNAs->remove($i+1); # $$r_trnact--; $stats->decrement_trnatotal(); } return 1; # exit loop immediately } } else # else (antisense) strand { if (($fp_tRNAs->get($i)->strand() eq "-") && (&seg_overlap($trna->end(), $trna->start(), $fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i)->start()))) { $fp_tRNAs->get($i)->start(&max($trna->start(), $fp_tRNAs->get($i)->start())); $fp_tRNAs->get($i)->end(&min($trna->end(), $fp_tRNAs->get($i)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $self->{eufind_mask}); $fp_tRNAs->get($i)->isotype($trna->isotype()); $fp_tRNAs->get($i)->score($trna->score()); if (($i != ($fp_tRNAs->get_count() - 1)) and ($fp_tRNAs->get($i)->end() <= $fp_tRNAs->get($i+1)->start())) { $fp_tRNAs->get($i)->end(&min($fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i+1)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $fp_tRNAs->get($i+1)->hit_source()); # splice(@$r_hit_list,$i+1,1); # toss out overlapping hit $fp_tRNAs->remove($i+1); # $$r_trnact--; $stats->decrement_trnatotal(); } return 1; # exit loop immediately } } # else (antisense) strand } # for each (hit) return 0; # current hit is not a repeat } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/SprinzlPos.pm0000644000543100007160000001420313053260571017764 0ustar pchanlowelab# tRNAscanSE/SprinzlPos.pm # This class contains parameters and functions describing Sprinzl positions in tRNAs. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::SprinzlPos; use strict; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{sprinzl_pos} = ['1','2','3','4','5','6','7','8','9','10','11','12','13','14','15','16', '17','17a','18','19','20','20a','20b','21','22','23','24','25', '26','27','28','29','30','31','32','33','34','35','36','37','38', '39','40','41','42','43','44','45', 'e11','e12','e13','e14','e15','e16','e17', 'e1','e2','e3','e4','e5', 'e27','e26','e25','e24','e23','e22','e21', '46','47','48','49','50','51','52','53','54','55','56','57','58', '59','60','61','62','63','64','65','66','67','68','69','70','71', '72','73','74','75','76']; $self->{sprinzl_pairs} = {'1'=>'72', '2'=>'71', '3'=>'70', '4'=>'69', '5'=>'68', '6'=>'67', '7'=>'66', '10'=>'25', '11'=>'24', '12'=>'23', '13'=>'22', '27'=>'43', '28'=>'42', '29'=>'41', '30'=>'40', '31'=>'39', 'e11'=>'e21', 'e12'=>'e22', 'e13'=>'e23', 'e14'=>'e24', 'e15'=>'e25', 'e16'=>'e26', 'e17'=>'e27', '49'=>'65', '50'=>'64', '51'=>'63', '52'=>'62', '53'=>'61'}; $self->{rev_sprinzl_pairs} = {'72'=>'1', '71'=>'2', '70'=>'3', '69'=>'4', '68'=>'5', '67'=>'6', '66'=>'7', '25'=>'10', '24'=>'11', '23'=>'12', '22'=>'13', '43'=>'27', '42'=>'28', '41'=>'29', '40'=>'30', '39'=>'31', 'e21'=>'e11', 'e22'=>'e12', 'e23'=>'e13', 'e24'=>'e14', 'e25'=>'e15', 'e26'=>'e16', 'e27'=>'e17', '65'=>'49', '64'=>'50', '63'=>'51', '62'=>'52', '61'=>'53'}; $self->{stem_pos} = {'1'=>'A1', '2'=>'A2', '3'=>'A3', '4'=>'A4', '5'=>'A5', '6'=>'A6', '7'=>'A7', '10'=>'D1', '11'=>'D2', '12'=>'D3', '13'=>'D4', '27'=>'C1', '28'=>'C2', '29'=>'C3', '30'=>'C4', '31'=>'C5', 'e11'=>'V1', 'e12'=>'V2', 'e13'=>'V3', 'e14'=>'V4', 'e15'=>'V5', 'e16'=>'V6', 'e17'=>'V7', '49'=>'T1', '50'=>'T2', '51'=>'T3', '52'=>'T4', '53'=>'T5'}; $self->{regions} = {"5P1"=>"5p Acceptor Stem", "3P1"=>"3p Acceptor Stem", "L1"=>"Acceptor-D-arm-linker", "5P2"=>"5p D-arm", "3P2"=>"3p D-arm", "L2"=>"D-loop", "L3"=>"D-arm-Anticodon-linker", "5P3"=>"5p Anticodon Stem", "3P3"=>"3p Anticodon Stem", "L4"=>"Anticodon Loop", "L5"=>"Variable Loop", "P4"=>"Variable Stem", "5P5"=>"5p T-arm", "3P5"=>"3p T-arm", "L6"=>"T-Psi-C Loop", "L7"=>"3p end"}; $self->{ss_pos} = {'1'=>'5P1', '2'=>'5P1', '3'=>'5P1', '4'=>'5P1', '5'=>'5P1', '6'=>'5P1', '7'=>'5P1', '72'=>'3P1', '71'=>'3P1', '70'=>'3P1', '69'=>'3P1', '68'=>'3P1', '67'=>'3P1', '66'=>'3P1', '8'=>'L1', '9'=>'L1', '10'=>'5P2', '11'=>'5P2', '12'=>'5P2', '13'=>'5P2', '25'=>'3P2', '24'=>'3P2', '23'=>'3P2', '22'=>'3P2', '14'=>'L2', '15'=>'L2', '16'=>'L2', '17'=>'L2', '17a'=>'L2', '18'=>'L2', '19'=>'L2', '20'=>'L2', '20a'=>'L2', '20b'=>'L2', '21'=>'L2', '26'=>'L3', '27'=>'5P3', '28'=>'5P3', '29'=>'5P3', '30'=>'5P3', '31'=>'5P3', '43'=>'3P3', '42'=>'3P3', '41'=>'3P3', '40'=>'3P3', '39'=>'3P3', '32'=>'L4', '33'=>'L4', '34'=>'L4', '35'=>'L4', '36'=>'L4', '37'=>'L4', '38'=>'L4', '44'=>'L5', '45'=>'L5', '46'=>'L5', '47'=>'L5', '48'=>'L5', 'e11'=>'P4', 'e12'=>'P4', 'e13'=>'P4', 'e14'=>'P4', 'e15'=>'P4', 'e16'=>'P4', 'e17'=>'P4', 'e21'=>'P4', 'e22'=>'P4', 'e23'=>'P4', 'e24'=>'P4', 'e25'=>'P4', 'e26'=>'P4', 'e27'=>'P4', 'e1'=>'P4', 'e2'=>'P4', 'e3'=>'P4', 'e4'=>'P4', 'e5'=>'P4', '49'=>'5P5', '50'=>'5P5', '51'=>'5P5', '52'=>'5P5', '53'=>'5P5', '65'=>'3P5', '64'=>'3P5', '63'=>'3P5', '62'=>'3P5', '61'=>'3P5', '54'=>'L6', '55'=>'L6', '56'=>'L6', '57'=>'L6', '58'=>'L6', '59'=>'L6', '60'=>'L6', '73'=>'L7', '74'=>'L7', '75'=>'L7', '76'=>'L7'}; $self->{universal} = {'8'=>'T', '14'=>'A', '18'=>'G', '19'=>'G', '21'=>'A', '33'=>'T', '53'=>'G', '54'=>'T', '55'=>'T', '56'=>'C', '58'=>'A', '74'=>'C', '75'=>'C', '76'=>'A'}; } sub sprinzl_pos { my $self = shift; return @{ $self->{sprinzl_pos} }; } sub sprinzl_pairs { my $self = shift; return %{ $self->{sprinzl_pairs} }; } sub sprinzl_pair { my $self = shift; my $pos = shift; my $value = ""; if (defined $self->{sprinzl_pairs}->{$pos}) { $value = $self->{sprinzl_pairs}->{$pos}; } return $value; } sub rev_sprinzl_pairs { my $self = shift; return %{ $self->{rev_sprinzl_pairs} }; } sub rev_sprinzl_pair { my $self = shift; my $pos = shift; my $value = ""; if (defined $self->{rev_sprinzl_pairs}->{$pos}) { $value = $self->{rev_sprinzl_pairs}->{$pos}; } return $value; } sub stem_pos { my $self = shift; return %{ $self->{stem_pos} }; } sub stem_pos_code { my $self = shift; my $pos = shift; my $value = ""; if (defined $self->{stem_pos}->{$pos}) { $value = $self->{stem_pos}->{$pos}; } return $value; } sub regions { my $self = shift; return %{ $self->{regions} }; } sub region_desc { my $self = shift; my $region = shift; my $value = ""; if (defined $self->{regions}->{$region}) { $value = $self->{regions}->{$region}; } return $value; } sub ss_pos { my $self = shift; return %{ $self->{ss_pos} }; } sub pos_region { my $self = shift; my $pos = shift; my $value = ""; if (defined $self->{ss_pos}->{$pos}) { $value = $self->{ss_pos}->{$pos}; } return $value; } sub pos_region_desc { my $self = shift; my $pos = shift; my $value = ""; my $search = $pos; if (index($pos, ":i") > -1) { $search = substr($pos, 0, index($pos, ":i")); } if (defined $self->{ss_pos}->{$search}) { $value = $self->{regions}->{$self->{ss_pos}->{$search}}; } return $value; } sub universal_base { my $self = shift; my $pos = shift; my $value = ""; if (defined $self->{universal}->{$pos}) { $value = $self->{universal}->{$pos}; } return $value; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/CM.pm0000644000543100007160000041732213534334324016153 0ustar pchanlowelab# tRNAscanSE/CM.pm # This class contains parameters and functions for running CM tRNA search used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::CM; use strict; use File::Copy; use tRNAscanSE::Configuration; use tRNAscanSE::Options; use tRNAscanSE::Utils; use tRNAscanSE::LogFile; use tRNAscanSE::ScanResult; use tRNAscanSE::SS; use tRNAscanSE::Sequence; use tRNAscanSE::tRNA; use tRNAscanSE::ArraytRNA; use tRNAscanSE::IntResultFile; use tRNAscanSE::MultiResultFile; use tRNAscanSE::CMscanResultFile; use tRNAscanSE::ArrayCMscanResults; use tRNAscanSE::FpScanResultFile; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{CM_check_for_introns} = 0; # check for non-canonical introns $self->{CM_check_for_split_halves} = 0; # check for split tRNA fragments $self->{skip_pseudo_filter} = 0; # enable filter for psuedogenes (Cove score <40, # primary struct score <10 bits, secondary # structure score < 5 bits) $self->{get_hmm_score} = 0; # also score tRNA with covariance model # without sec structure info, similar # to getting hmm score for match of # seq to tRNA hmm (-H option) # Convariance model file path $self->{main_cm_file_path} = {}; $self->{mainNS_cm_file_path} = {}; $self->{cove_cm_file_path} = ''; $self->{intron_cm_file_path} = {}; $self->{arch_five_half_cm_file_path} = ''; $self->{arch_three_half_cm_file_path} = ''; $self->{Pselc_cm_file_path} = ''; $self->{Eselc_cm_file_path} = ''; $self->{isotype_cm_db_file_path} = ''; $self->{mito_isotype_cm_db_file_path} = ''; $self->{isotype_cm_file_paths} = {}; $self->{mito_isotype_cm_file_paths} = {}; $self->{isotype_cm_cutoff} = {}; $self->{covels_bin} = "covels-SE"; # Application executable name $self->{coves_bin} = "coves-SE"; $self->{cmsearch_bin} = "cmsearch"; $self->{cmscan_bin} = "cmscan"; $self->{infernal_thread} = -1; $self->{tab_results} = +[]; } sub CM_mode { my $self = shift; if (@_) { $self->{CM_mode} = shift; } return $self->{CM_mode}; } sub cove_mode { my $self = shift; return ($self->{CM_mode} eq 'cove'); } sub infernal_mode { my $self = shift; return ($self->{CM_mode} eq 'infernal'); } sub cm_cutoff { my $self = shift; if (@_) { $self->{cm_cutoff} = shift; } return $self->{cm_cutoff}; } sub organelle_cm_cutoff { my $self = shift; if (@_) { $self->{organelle_cm_cutoff} = shift; } return $self->{organelle_cm_cutoff}; } sub infernal_fp_cutoff { my $self = shift; if (@_) { $self->{infernal_fp_cutoff} = shift; } return $self->{infernal_fp_cutoff}; } sub BHB_cm_cutoff { my $self = shift; if (@_) { $self->{BHB_cm_cutoff} = shift; } return $self->{BHB_cm_cutoff}; } sub max_tRNA_length { my $self = shift; if (@_) { $self->{max_tRNA_length} = shift; } return $self->{max_tRNA_length}; } sub max_cove_tRNA_length { my $self = shift; if (@_) { $self->{max_cove_tRNA_length} = shift; } return $self->{max_cove_tRNA_length}; } sub max_cmsearch_tRNA_length { my $self = shift; if (@_) { $self->{max_cmsearch_tRNA_length} = shift; } return $self->{max_cmsearch_tRNA_length}; } sub CM_check_for_introns { my $self = shift; if (@_) { $self->{CM_check_for_introns} = shift; } return $self->{CM_check_for_introns}; } sub CM_check_for_split_halves { my $self = shift; if (@_) { $self->{CM_check_for_split_halves} = shift; } return $self->{CM_check_for_split_halves}; } sub min_tRNA_no_intron { my $self = shift; if (@_) { $self->{min_tRNA_no_intron} = shift; } return $self->{min_tRNA_no_intron}; } sub min_intron_length { my $self = shift; if (@_) { $self->{min_intron_length} = shift; } return $self->{min_intron_length}; } sub skip_pseudo_filter { my $self = shift; if (@_) { $self->{skip_pseudo_filter} = shift; } return $self->{skip_pseudo_filter}; } sub min_pseudo_filter_score { my $self = shift; if (@_) { $self->{min_pseudo_filter_score} = shift; } return $self->{min_pseudo_filter_score}; } sub min_ss_score { my $self = shift; if (@_) { $self->{min_ss_score} = shift; } return $self->{min_ss_score}; } sub min_hmm_score { my $self = shift; if (@_) { $self->{min_hmm_score} = shift; } return $self->{min_hmm_score}; } sub get_hmm_score { my $self = shift; if (@_) { $self->{get_hmm_score} = shift; } return $self->{get_hmm_score}; } sub main_cm_file_path { my $self = shift; if (@_) { %{$self->{main_cm_file_path}} = shift; } return %{$self->{main_cm_file_path}}; } sub add_main_cm_file_path { my $self = shift; my ($key, $file) = @_; $self->{main_cm_file_path}->{$key} = $file; } sub mainNS_cm_file_path { my $self = shift; if (@_) { %{$self->{mainNS_cm_file_path}} = shift; } return %{$self->{mainNS_cm_file_path}}; } sub add_mainNS_cm_file_path { my $self = shift; my ($key, $file) = @_; $self->{mainNS_cm_file_path}->{$key} = $file; } sub cove_cm_file_path { my $self = shift; if (@_) { $self->{cove_cm_file_path} = shift; } return $self->{cove_cm_file_path}; } sub isotype_cm_db_file_path { my $self = shift; if (@_) { $self->{isotype_cm_db_file_path} = shift; } return $self->{isotype_cm_db_file_path}; } sub mito_isotype_cm_db_file_path { my $self = shift; if (@_) { $self->{mito_isotype_cm_db_file_path} = shift; } return $self->{mito_isotype_cm_db_file_path}; } sub isotype_cm_file_paths { my $self = shift; if (@_) { %{$self->{isotype_cm_file_paths}} = shift; } return %{$self->{isotype_cm_file_paths}}; } sub add_isotype_cm_file_path { my $self = shift; my ($isotype, $file) = @_; $self->{isotype_cm_file_paths}->{$isotype} = $file; } sub mito_isotype_cm_file_paths { my $self = shift; if (@_) { %{$self->{mito_isotype_cm_file_paths}} = shift; } return %{$self->{mito_isotype_cm_file_paths}}; } sub add_mito_isotype_cm_file_path { my $self = shift; my ($isotype, $file) = @_; $self->{mito_isotype_cm_file_paths}->{$isotype} = $file; } sub intron_cm_file_path { my $self = shift; if (@_) { %{$self->{intron_cm_file_path}} = shift; } return %{$self->{intron_cm_file_path}}; } sub add_intron_cm_file_path { my $self = shift; my ($key, $file) = @_; $self->{intron_cm_file_path}->{$key} = $file; } sub Pselc_cm_file_path { my $self = shift; if (@_) { $self->{Pselc_cm_file_path} = shift; } return $self->{Pselc_cm_file_path}; } sub Eselc_cm_file_path { my $self = shift; if (@_) { $self->{Eselc_cm_file_path} = shift; } return $self->{Eselc_cm_file_path}; } sub add_isotype_cm_cutoff { my $self = shift; my ($type, $cutoff) = @_; $self->{isotype_cm_cutoff}->{$type} = $cutoff; } sub covels_bin { my $self = shift; if (@_) { $self->{covels_bin} = shift; } return $self->{covels_bin}; } sub coves_bin { my $self = shift; if (@_) { $self->{coves_bin} = shift; } return $self->{coves_bin}; } sub cmsearch_bin { my $self = shift; if (@_) { $self->{cmsearch_bin} = shift; } return $self->{cmsearch_bin}; } sub infernal_thread { my $self = shift; if (@_) { $self->{infernal_thread} = shift; } return $self->{infernal_thread}; } sub tab_results { my $self = shift; if (@_) { $self->{tab_results} = shift; } return $self->{tab_results}; } sub set_defaults { my $self = shift; my $global_vars = shift; my $global_constants = $global_vars->{global_constants}; $self->{cm_mode} = $global_constants->get("cm_mode"); $self->{cm_cutoff} = $global_constants->get("cm_cutoff"); $self->{organelle_cm_cutoff} = $global_constants->get("organelle_cm_cutoff"); $self->{infernal_fp_cutoff} = $global_constants->get("infernal_fp_cutoff"); $self->{max_tRNA_length} = $global_constants->get("max_tRNA_length"); $self->{max_cove_tRNA_length} = $global_constants->get("max_cove_tRNA_length"); $self->{max_cmsearch_tRNA_length} = $global_constants->get("max_cmsearch_tRNA_length"); $self->{min_tRNA_no_intron} = $global_constants->get("min_tRNA_no_intron"); $self->{min_intron_length} = $global_constants->get("min_intron_length"); $self->{min_cove_pseudo_filter_score} = $global_constants->get("min_cove_pseudo_filter_score"); $self->{min_cmsearch_pseudo_filter_score} = $global_constants->get("min_cmsearch_pseudo_filter_score"); $self->{min_ss_score} = $global_constants->get("min_ss_score"); $self->{min_hmm_score} = $global_constants->get("min_hmm_score"); $self->{nci_scan_cutoff} = $global_constants->get("nci_scan_cutoff"); $self->{BHB_cm_cutoff} = $global_constants->get("BHB_cm_cutoff"); $self->{split_tRNA_scan_cutoff} = $global_constants->get("split_tRNA_scan_cutoff"); $self->{half_tRNA_cutoff} = $global_constants->get("half_tRNA_cutoff"); $self->{left_splicing_len} = $global_constants->get("left_splicing_len"); $self->{right_splicing_len} = $global_constants->get("right_splicing_len"); my $search_types = $global_constants->get("isotype_cm_cutoff"); foreach my $type (sort keys %$search_types) { $self->add_isotype_cm_cutoff($type, $search_types->{$type}); } } sub set_file_paths { my $self = shift; my $global_vars = shift; my $opts = $global_vars->{options}; my $global_constants = $global_vars->{global_constants}; my $isotype_cms = ""; if ($opts->euk_mode()) { if ($self->infernal_mode()) { $self->{main_cm_file_path}->{Domain} = $global_constants->get_subvalue("cm", "eukaryota"); # default to eukar model $self->{main_cm_file_path}->{SeC} = $global_constants->get_subvalue("euk_cm", "SeC"); # Euk SeC model $self->{mainNS_cm_file_path}->{Domain} = $global_constants->get_subvalue("cm", "eukaryota-ns"); # no secondary struct $self->{cove_cm_file_path} = $global_constants->get_subvalue("cove_cm", "eukaryota"); # default to eukar cove model } elsif ($self->cove_mode()) { $self->{main_cm_file_path}->{Domain} = $global_constants->get_subvalue("cove_cm", "eukaryota"); # default to eukar cove model $self->{mainNS_cm_file_path}->{Domain} = $global_constants->get_subvalue("cove_cm", "eukaryota-ns"); # no secondary struct } $self->{isotype_cm_db_file_path} = $global_constants->get_subvalue("isotype_cm", "eukaryota"); if ($opts->mito_model() ne "") { $self->{mito_isotype_cm_db_file_path} = $global_constants->get_subvalue("mito_cm", $opts->mito_model()); } } elsif ($opts->bact_mode()) { if ($self->infernal_mode()) { $self->{main_cm_file_path}->{Domain} = $global_constants->get_subvalue("cm", "bacteria"); # use bacterial covariance model $self->{main_cm_file_path}->{SeC} = $global_constants->get_subvalue("bact_cm", "SeC"); # Bacterial SeC model $self->{mainNS_cm_file_path}->{Domain} = $global_constants->get_subvalue("cm", "bacteria-ns"); # no sec struct $self->{cove_cm_file_path} = $global_constants->get_subvalue("cove_cm", "bacteria"); # use bacterial covariance model } elsif ($self->cove_mode()) { $self->{main_cm_file_path}->{Domain} = $global_constants->get_subvalue("cove_cm", "bacteria"); # use bacterial covariance model $self->{mainNS_cm_file_path}->{Domain} = $global_constants->get_subvalue("cove_cm", "bacteria-ns"); # no sec struct } $self->{isotype_cm_db_file_path} = $global_constants->get_subvalue("isotype_cm", "bacteria"); } elsif ($opts->arch_mode()) { my $nci_cms = $global_constants->get("nci_cm"); foreach my $type (sort keys %$nci_cms) { $self->add_intron_cm_file_path($type, $nci_cms->{$type}); } $self->{arch_five_half_cm_file_path} = $global_constants->get_subvalue("cm", "arch_5h"); # model for finding 5'half $self->{arch_three_half_cm_file_path} = $global_constants->get_subvalue("cm", "arch_3h"); # model for finding 3'half if ($self->infernal_mode()) { $self->{main_cm_file_path}->{Domain} = $global_constants->get_subvalue("cm", "archaea"); # use archaea covariance model $self->{main_cm_file_path}->{SeC} = $global_constants->get_subvalue("arch_cm", "SeC"); # Archaeal SeC model $self->{mainNS_cm_file_path}->{Domain} = $global_constants->get_subvalue("cm", "archaea-ns"); # no sec struct $self->{cove_cm_file_path} = $global_constants->get_subvalue("cove_cm", "archaea"); # use archaea covariance model } elsif ($opts->cove_mode()) { $self->{main_cm_file_path}->{Domain} = $global_constants->get_subvalue("cove_cm", "archaea"); # use archaea covariance model $self->{mainNS_cm_file_path}->{Domain} = $global_constants->get_subvalue("cove_cm", "archaea-ns"); # no sec struct } $self->{isotype_cm_db_file_path} = $global_constants->get_subvalue("isotype_cm", "archaea"); } elsif ($opts->mito_mode()) { if ($self->infernal_mode()) { $isotype_cms = $global_constants->get("mito_cm_".$opts->mito_model()); foreach my $isotype (sort keys %$isotype_cms) { $self->{main_cm_file_path}->{$isotype} = $isotype_cms->{$isotype}; } } } elsif ($opts->metagenome_mode()) { if ($self->infernal_mode()) { $self->{main_cm_file_path}->{general} = $global_constants->get_subvalue("cm", "general"); # use general covariance model $self->{mainNS_cm_file_path}->{general} = $global_constants->get_subvalue("cm", "general-ns"); # no sec struct $self->{main_cm_file_path}->{euk} = $global_constants->get_subvalue("cm", "eukayota"); # use eukayota covariance model $self->{mainNS_cm_file_path}->{euk} = $global_constants->get_subvalue("cm", "eukayota-ns"); # no sec struct $self->{main_cm_file_path}->{arch} = $global_constants->get_subvalue("cm", "archaea"); # use archaea covariance model $self->{mainNS_cm_file_path}->{arch} = $global_constants->get_subvalue("cm", "archaea-ns"); # no sec struct $self->{main_cm_file_path}->{bact} = $global_constants->get_subvalue("cm", "bacteria"); # use bacteria covariance model $self->{mainNS_cm_file_path}->{bact} = $global_constants->get_subvalue("cm", "bacteria-ns"); # no sec struct } } elsif ($opts->numt_mode()) { $isotype_cms = $global_constants->get("mito_cm_mammal"); foreach my $isotype (sort keys %$isotype_cms) { $self->add_isotype_cm_file_path($isotype, $isotype_cms->{$isotype}); } } elsif ($opts->general_mode()) { if ($self->infernal_mode()) { $self->{main_cm_file_path}->{general} = $global_constants->get_subvalue("cm", "general"); # use original covariance model $self->{mainNS_cm_file_path}->{general} = $global_constants->get_subvalue("cm", "general-ns"); # no sec struct $self->{cove_cm_file_path} = $global_constants->get_subvalue("cove_cm", "general"); # use original covariance model } elsif ($self->cove_mode()) { $self->{main_cm_file_path}->{general} = $global_constants->get_subvalue("cove_cm", "general"); # use original covariance model $self->{mainNS_cm_file_path}->{general} = $global_constants->get_subvalue("cove_cm", "general-ns"); # no sec struct } } elsif ($opts->organelle_mode()) { if ($self->infernal_mode()) { $self->{main_cm_file_path}->{general} = $global_constants->get_subvalue("cm", "general1415"); # use original covariance model $self->{mainNS_cm_file_path}->{general} = $global_constants->get_subvalue("cm", "general1415-ns"); # no sec struct $self->{cove_cm_file_path} = $global_constants->get_subvalue("cove_cm", "general"); # use original covariance model } elsif ($self->cove_mode()) { $self->{main_cm_file_path}->{general} = $global_constants->get_subvalue("cove_cm", "general"); # use original covariance model $self->{mainNS_cm_file_path}->{general} = $global_constants->get_subvalue("cove_cm", "general-ns"); # no sec struct } } elsif ($opts->alternate_mode()) { my $cms = $global_constants->get("alt_cm"); foreach my $key (sort keys %$cms) { $self->add_main_cm_file_path($key, $cms->{$key}); } } if ($self->infernal_mode()) { $self->{Pselc_cm_file_path} = $self->{main_cm_file_path}->{SeC}; $self->{Eselc_cm_file_path} = $self->{main_cm_file_path}->{SeC}; } elsif ($self->cove_mode()) { $self->{Pselc_cm_file_path} = $global_constants->get_subvalue("cove_cm", "PSELC"); $self->{Eselc_cm_file_path} = $global_constants->get_subvalue("cove_cm", "ESELC"); } } sub check_lib_files { my $self = shift; my ($opts) = @_; foreach my $cur_cm (sort keys %{$self->{main_cm_file_path}}) { if ($self->{main_cm_file_path}->{$cur_cm} ne "" and !-r $self->{main_cm_file_path}->{$cur_cm}) { die "FATAL: Unable to open ".$self->{main_cm_file_path}->{$cur_cm}." covariance model file\n\n"; } } foreach my $cur_cm (sort keys %{$self->{mainNS_cm_file_path}}) { if ($self->{mainNS_cm_file_path}->{$cur_cm} ne "" and !-r $self->{mainNS_cm_file_path}->{$cur_cm}) { die "FATAL: Unable to open ".$self->{mainNS_cm_file_path}->{$cur_cm}." covariance model file\n\n"; } } if ($self->{cove_cm_file_path} ne "" and !-r $self->{cove_cm_file_path}) { die "FATAL: Unable to open ".$self->{cove_cm_file_path}." covariance model file\n\n"; } if ($self->{Pselc_cm_file_path} ne "" and !-r $self->{Pselc_cm_file_path}) { die "FATAL: Unable to open ".$self->{Pselc_cm_file_path}." covariance model file\n\n"; } if ($self->{Eselc_cm_file_path} ne "" and !-r $self->{Eselc_cm_file_path}) { die "FATAL: Unable to open ".$self->{Eselc_cm_file_path}." covariance model file\n\n"; } if ($self->{isotype_cm_db_file_path} ne "" and (!-r $self->{isotype_cm_db_file_path} || !-e "$self->{isotype_cm_db_file_path}".".i1f")) { die "FATAL: Unable to open ".$self->{isotype_cm_db_file_path}." covariance model file\n\n"; } if ($self->{mito_isotype_cm_db_file_path} ne "" and (!-r $self->{mito_isotype_cm_db_file_path} || !-e "$self->{mito_isotype_cm_db_file_path}".".i1f")) { die "FATAL: Unable to open ".$self->{mito_isotype_cm_db_file_path}." covariance model file\n\n"; } foreach my $isotype (sort keys %{$self->{isotype_cm_file_paths}}) { if ($self->{isotype_cm_file_paths}->{$isotype} ne "" and !-r $self->{isotype_cm_file_paths}->{$isotype}) { die "FATAL: Unable to open ".$self->{isotype_cm_file_paths}->{$isotype}." covariance model file\n\n"; } } if ($opts->arch_mode() && ($self->infernal_mode() || $self->cove_mode())) { foreach my $cur_cm (sort keys %{$self->{intron_cm_file_path}}) { if ($self->{intron_cm_file_path}->{$cur_cm} ne "" and !-r $self->{intron_cm_file_path}->{$cur_cm}) { die "FATAL: Unable to open ".$self->{intron_cm_file_path}->{$cur_cm}." covariance model file\n\n"; } } if ($self->{arch_five_half_cm_file_path} ne "" and !-r $self->{arch_five_half_cm_file_path}) { die "FATAL: Unable to open ".$self->{arch_five_half_cm_file_path}." covariance model file\n\n"; } if ($self->{arch_three_half_cm_file_path} ne "" and !-r $self->{arch_three_half_cm_file_path}) { die "FATAL: Unable to open ".$self->{arch_three_half_cm_file_path}." covariance model file\n\n"; } } } sub set_bin { my $self = shift; my $bindir = shift; if ($^O =~ /^MSWin/) { $self->{cmsearch_bin} .= ".exe"; $self->{covels_bin} .= ".exe"; $self->{coves_bin} .= ".exe"; } if (!(-x $self->{covels_bin})) { $self->{covels_bin} = $bindir."/".$self->{covels_bin}; if (!(-x $self->{covels_bin})) { die "FATAL: Unable to find ".$self->{covels_bin}." executable\n\n"; } } if (!(-x $self->{coves_bin})) { $self->{coves_bin} = $bindir."/".$self->{coves_bin}; if (!(-x $self->{coves_bin})) { die "FATAL: Unable to find ".$self->{coves_bin}." executable\n\n"; } } } sub set_infernal_bin { my $self = shift; my $bindir = shift; $self->{cmsearch_bin} = $bindir."/".$self->{cmsearch_bin}; if (!(-x $self->{cmsearch_bin})) { die "FATAL: Unable to find ".$self->{cmsearch_bin}." executable\n\n"; } $self->{cmscan_bin} = $bindir."/".$self->{cmscan_bin}; if (!(-x $self->{cmscan_bin})) { die "FATAL: Unable to find ".$self->{cmscan_bin}." executable\n\n"; } } sub set_search_params { my $self = shift; my ($opts, $r_scan_len, $r_cur_cm_file, $max_search_tRNA_length, $trna) = @_; # don't set '-W' param over 200 bp if a pre-scanner is being used, # use max window of 150 bp if cmsearch only (too slow otherwise) if ($opts->eufind_mode() || $opts->tscan_mode() || $opts->use_prev_ts_run()) { $$r_scan_len = &min($trna->len(), $self->{max_tRNA_length}); } else { $$r_scan_len = $max_search_tRNA_length; } # set correct CM file for current tRNA $$r_cur_cm_file = $self->{main_cm_file_path}->{Domain}; if ($opts->general_mode() or $opts->organelle_mode()) { $$r_cur_cm_file = $self->{main_cm_file_path}->{general}; } if ($opts->eufind_mode()) { # use prok selcys model if ($trna->isotype() eq "SeCp") { $$r_cur_cm_file = $self->{Pselc_cm_file_path}; } # use euk selcys model elsif ($trna->isotype() eq "SeCe") { $$r_cur_cm_file = $self->{Eselc_cm_file_path}; } } } # find anticodon loop & a-codon from coves or cmsearch output sub find_anticodon { my $self = shift; my ($opts, $trna, $gc) = @_; my ($antiloop, $antiloop_end, $ac_index, $anticodon, $verify_ac); my $seq = $trna->seq(); my $ss = $trna->ss(); my $model = $trna->model(); my $undef_anticodon = $gc->undef_anticodon(); my $antiloop_index = 0; my $antiloop_len = 0; # Match pattern in secondary structure output, # looking for second stem-loop structure ">>>>...<<<<" # that should be the anitocodon stem-loop if ($opts->mito_mode() and $model eq "SerGCT") { if ($ss =~ /^([>.]+)>([.]{4,})<+.+[>.]+<[<.]+/o) { # set to index position of first base in anticodon loop $antiloop_index = length($1) + 1; $antiloop_len = length($2); # anticodon loop length } } elsif ($opts->mito_mode()) { if ($ss =~ /^([>.]+<[<.]+[>.]*)>([.]{4,})<+.+[>.]+<[<.]+/o) { # set to index position of first base in anticodon loop $antiloop_index = length($1) + 1; $antiloop_len = length($2); # anticodon loop length } } elsif ($ss =~ /^([>.]+<[<.]+>[>.]*)>([.]{4,})<+.+[>.]+<[<.]+/o) { # set to index position of first base in anticodon loop $antiloop_index = length($1) + 1; $antiloop_len = length($2); # anticodon loop length } if ($antiloop_index != 0 and $antiloop_len != 0) { # index of end of anticodon loop $antiloop_end = $antiloop_index + $antiloop_len - 1; $antiloop = substr($seq, $antiloop_index, $antiloop_len); # remove '-' gaps from loop $antiloop =~ s/[\-]//g; # Don't guess if even number of bp in # anticodon loop if (!$opts->mito_mode()) { # remove introns & non-canonical bases $antiloop =~ s/[a-z]//g; if ((length($antiloop) < 5) || ((length($antiloop) % 2) == 0)) { return ($undef_anticodon, -1, -1, -1); } # get anticodon $ac_index = (length($antiloop) - 3) / 2; $anticodon = substr($antiloop, $ac_index, 3); $verify_ac = substr($seq, $ac_index + $antiloop_index, 3); } else { $antiloop = uc($antiloop); if (length($antiloop) < 5) { $trna->category("undetermined_ac"); return ($undef_anticodon, -1, -1, -1); } elsif ((length($antiloop) % 2) == 0) { $ac_index = int((length($antiloop) - 3) / 2); $anticodon = substr($antiloop, $ac_index, 3); my $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); if ($model eq $isotype or ($model eq "SerGCT" and $isotype eq "Ser") or ($model eq "SerTGA" and $isotype eq "Ser") or ($model eq "LeuTAG" and $isotype eq "Leu") or ($model eq "LeuTAA" and $isotype eq "Leu")) { $trna->category("mito_ac_mislocation"); $trna->note("(".$anticodon.")"); } else { $ac_index = int((length($antiloop) - 3) / 2 + 1); $anticodon = substr($antiloop, $ac_index, 3); $isotype = $gc->get_tRNA_type($self, $anticodon, $self->{main_cm_file_path}->{$model}, $model, $self->cove_mode()); if ($model eq $isotype or ($model eq "SerGCT" and $isotype eq "Ser") or ($model eq "SerTGA" and $isotype eq "Ser") or ($model eq "LeuTAG" and $isotype eq "Leu") or ($model eq "LeuTAA" and $isotype eq "Leu")) { $trna->category("mito_ac_mislocation"); $trna->note("(".$anticodon.")"); } else { $trna->category("mito_mismatch_ac"); $trna->note("(".$anticodon.")"); } } return ($undef_anticodon, -1, -1, -1); } else { # get anticodon $ac_index = (length($antiloop) - 3) / 2; $anticodon = substr($antiloop, $ac_index, 3); $verify_ac = uc(substr($seq, $ac_index + $antiloop_index, 3)); } } # check to see if anticodon extracted from the entire # trna sequence (coveseq) is same as that extracted from # just the anticodon loop sequence (antiloop) if ($verify_ac ne $anticodon) { $trna->category("undetermined_ac"); return ($undef_anticodon, -1, -1, -1); } return ($anticodon, $antiloop_index, $antiloop_end, $ac_index + $antiloop_index + 1); } else { $trna->category("undetermined_ac"); return ($undef_anticodon, -1, -1, -1); } } sub find_intron { my $self = shift; my ($trna_seq, $antiloop_index, $antiloop_end) = @_; my ($intron, $istart, $iend, $tmpstr, $antiloop_seq); my $min_intron_length = $self->{min_intron_length}; # check to see if it was unable # to determine the anticodon loop if ($antiloop_index == -1) { return(0, 0, 0); } # get subsequence from start of anticodon loop # to end of anticodon loop -- look for intron in it $antiloop_seq = substr($trna_seq, $antiloop_index, $antiloop_end - $antiloop_index + 1); if ($antiloop_seq =~ /^(.*[^a-z]+)([a-z]{$min_intron_length,})[^a-z]+/o) { $intron = $2; # make sure to get the base index for the last (not nec. only) occurrence # of the intron sequence string up to end of anticodon loop $tmpstr = substr($trna_seq, 0, $antiloop_end+1); $istart = index($tmpstr, $intron) + 1; $iend = length($intron) + $istart - 1; } else { $intron = 0; } return ($intron, $istart, $iend); } # is_pseudo_gene # # Runs a covariance model without secondary structure information on predicted tRNA, puts this value # in "hmm_score". Contribution to total score from secondary structure derived by subtracting hmm_score from total score # Returns non-zero if tRNA scores fall below minima for either primary or secondary structure components of score sub is_pseudo_gene { my $self = shift; my $global_constants = shift; my $opts = shift; my $log = shift; my ($trna, $prescan_tRNA_id, $tmp_trnaseq_file) = @_; my ($dummy1, $dummy2, $hmm_score, $hit_start, $hit_end, $hit_ct, $min_pseudo_filter_score); $dummy1 = $dummy2 = ""; # return values not used # skip check for pseudo gene if score is above minimum # -D (disable pseudogene checking) is specified # AND -H option (get hmm scores) is NOT specified if ($self->cove_mode()) { $min_pseudo_filter_score = $self->{min_cove_pseudo_filter_score}; } elsif ($self->infernal_mode()) { $min_pseudo_filter_score = $self->{min_cmsearch_pseudo_filter_score}; } if ((($trna->score() >= $min_pseudo_filter_score) || $self->{skip_pseudo_filter}) && !$self->{get_hmm_score}) { return 0; } $hmm_score = 0; my $ss_score = 0; my $score = 0; my $ns_cm = ""; if ($self->cove_mode()) { $ns_cm = $self->{mainNS_cm_file_path}->{Domain}; if ($opts->general_mode() or $opts->organelle_mode()) { $ns_cm = $self->{mainNS_cm_file_path}->{general} } ($dummy1, $dummy2, $hmm_score) = $self->run_coves($log, $tmp_trnaseq_file, $prescan_tRNA_id, $ns_cm); $score = $trna->get_domain_model("cove")->{score}; $ss_score = $score - $hmm_score; $trna->update_domain_model("cove", $score, $score, $hmm_score, $ss_score); } elsif ($self->infernal_mode()) { $ns_cm = $self->{mainNS_cm_file_path}->{$trna->model()}; my $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_cm_hmm.out"; ($hmm_score, $hit_start, $hit_end, $hit_ct) = $self->cmsearch_scoring($opts, $log, $tmp_trnaseq_file, $prescan_tRNA_id, $ns_cm, $cms_output_file); $score = $trna->get_domain_model("infernal")->{score}; $ss_score = $score - $hmm_score; $trna->update_domain_model("infernal", $score, $score, $hmm_score, $ss_score); } else { return -1; # Error - no second pass scanner selected } if ((($ss_score < $self->{min_ss_score}) || ($hmm_score < $self->{min_hmm_score})) && ($score < $min_pseudo_filter_score)) { return 1; } } # Get anticodon, isotype, intron location, and pseudogene status for tRNA with noncanonical introns sub decode_nci_tRNA_properties { my $self = shift; my ($global_vars, $trna) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $gc = $global_vars->{gc}; my $log = $global_vars->{log_file}; my ($anticodon, $acodon_index, $acodon_end1, $acodon_index2, $trna_type, $intron, $istart, $iend, $antiloop_index, $antiloop_end, $trna_len, $scan_len); $anticodon = "ERR"; my $mat_seq = ""; my $precursor_seq = $trna->seq(); my @introns = $trna->ar_introns(); for (my $i = 0; $i < scalar(@introns); $i++) { if ($i == 0) { $mat_seq = substr($precursor_seq, 0, $introns[$i]->{rel_start} - 1); } else { $mat_seq .= substr($precursor_seq, $introns[$i-1]->{rel_end}, $introns[$i]->{rel_start} - $introns[$i-1]->{rel_end} - 1); } } $mat_seq .= substr($precursor_seq, $introns[scalar(@introns)-1]->{rel_end}); if (uc($mat_seq) eq uc($trna->mat_seq())) { $trna->seq($trna->mat_seq()); } else { $log->warning("Mismatch mature sequence for tRNA for noncanonical intron\t". $trna->tRNAscan_id()); } if ($self->cove_mode() || $self->infernal_mode()) { ($anticodon, $antiloop_index, $antiloop_end, $acodon_index) = $self->find_anticodon($opts, $trna, $gc); $acodon_index2 = 0; $trna->anticodon($anticodon); for (my $i = 0; $i < scalar(@introns); $i++) { if ($acodon_index > $introns[$i]->{rel_start}) { $acodon_index += ($introns[$i]->{rel_end} - $introns[$i]->{rel_start} + 1); } elsif ($acodon_index < $introns[$i]->{rel_start} and ($acodon_index + 2) >= $introns[$i]->{rel_start}) { $acodon_end1 = $introns[$i]->{rel_start} - 1; $acodon_index2 = $introns[$i]->{rel_end} + 1; } elsif ($acodon_index + 2 < $introns[$i]->{rel_start}) { last; } } if ($trna->get_ac_pos_count() > 0) { $trna->remove_ac_pos(0); } if ($acodon_index2 == 0) { $trna->add_ac_pos($acodon_index, $acodon_index + 2); } else { $trna->add_ac_pos($acodon_index, $acodon_end1); $trna->add_ac_pos($acodon_index2, (3 - ($acodon_end1 - $acodon_index + 1)) + $acodon_index2 - 1); } } else { die "Second pass mode not selected -- can't decode tRNA type\n\n"; } # check for problem parsing anticodon loop if (($anticodon eq $gc->undef_anticodon()) || ($trna->seq() eq 'Error')) { $trna->anticodon($gc->undef_anticodon()); $trna->isotype($gc->undef_isotype()); $intron = 0; if ($opts->save_odd_struct()) { open(ODDTRNA, ">>".$opts->odd_struct_file()) || die "FATAL: Can't open ".$opts->odd_struct_file()." to save seconary structures\n\n"; print ODDTRNA $trna->tRNAscan_id()." (".$trna->start()."-".$trna->end()."):\n".$trna->seq()."\n".$trna->ss()."\n\n"; close(ODDTRNA); } } # continue tRNA struct parsing else { ($intron, $istart, $iend) = $self->find_intron($trna->seq(), $antiloop_index, $antiloop_end); if ($intron) { $mat_seq = substr($trna->seq(), 0, $istart - 1).substr($trna->seq(), $iend); $trna->mat_ss(substr($trna->ss(), 0, $istart - 1).substr($trna->ss(), $iend)); $trna->ss($trna->mat_ss()); for (my $i = 0; $i < scalar(@introns); $i++) { if ($istart > $introns[$i]->{rel_start}) { $istart += ($introns[$i]->{rel_end} - $introns[$i]->{rel_start} + 1); $iend += ($introns[$i]->{rel_end} - $introns[$i]->{rel_start} + 1); } elsif ($iend < $introns[$i]->{rel_start}) { last; } } my $intron_start = 0; my $intron_end = 0; if ($trna->strand() eq "+") { $intron_start = $istart + $trna->start() - 1; $intron_end = $iend + $trna->start() - 1 } else { $intron_start = $trna->end() - $iend + 1; $intron_end = $trna->end() - $istart + 1; } $trna->add_intron($istart, $iend, $intron_start, $intron_end, "CI", $intron); $trna->merge_introns(); } $trna->isotype($gc->get_tRNA_type($self, $trna->anticodon(), $self->{main_cm_file_path}->{$trna->model()}, $trna->model(), $self->cove_mode())); } # Reset CI type if marked as NCI @introns = $trna->ar_introns(); my $has_CI = 0; for (my $i = 0; $i < scalar(@introns); $i++) { if ($introns[$i]->{type} eq "CI") { $has_CI = 1; last; } } for (my $i = 0; !$has_CI and $i < scalar(@introns); $i++) { if ($acodon_index2 == 0) { if ($acodon_index + 2 + 2 == $introns[$i]->{rel_start} and $introns[$i]->{type} eq "NCI") { $trna->set_intron($i, $introns[$i]->{rel_start}, $introns[$i]->{rel_end}, "CI", $introns[$i]->{seq}); last; } } else { if (((3 - ($acodon_end1 - $acodon_index + 1)) + $acodon_index2 - 1 + 2) == $introns[$i]->{rel_start} and $introns[$i]->{type} eq "NCI") { $trna->set_intron($i, $introns[$i]->{rel_start}, $introns[$i]->{rel_end}, "CI", $introns[$i]->{seq}); last; } } } # Write current tRNA to temp file for re-analysis with other models $trna_len = length($trna->seq()); &write_tRNA($global_constants->get("tmp_trnaseq_file"), $trna->tRNAscan_id(), "", $trna->seq(), 1); if (($trna->model() ne "SeC") && ($self->is_pseudo_gene($global_constants, $opts, $log, $trna, $trna->tRNAscan_id(), $global_constants->get("tmp_trnaseq_file"))) && (!$self->{skip_pseudo_filter})) { $trna->pseudo(1); } else { $trna->pseudo(0); } $trna->mat_seq($mat_seq); $trna->seq($precursor_seq); } # Get tRNA anticodon, isotype, intron location, and pseudogene status sub decode_tRNA_properties { my $self = shift; my ($global_vars, $trna, $prescan_tRNA, $cur_cm_file) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $gc = $global_vars->{gc}; my $log = $global_vars->{log_file}; my ($anticodon, $acodon_index, $trna_type, $intron, $istart, $iend, $antiloop_index, $antiloop_end, $trna_len, $scan_len); $anticodon = "ERR"; if ($self->cove_mode() || $self->infernal_mode()) { ($anticodon, $antiloop_index, $antiloop_end, $acodon_index) = $self->find_anticodon($opts, $trna, $gc); $trna->anticodon($anticodon); $trna->add_ac_pos($acodon_index, $acodon_index + 2); } else { die "Second pass mode not selected -- can't decode tRNA type\n\n"; } # check for problem parsing anticodon loop if (($anticodon eq $gc->undef_anticodon()) || ($trna->seq() eq 'Error')) { $trna->anticodon($gc->undef_anticodon()); $trna->isotype($gc->undef_isotype()); $intron = 0; if ($opts->save_odd_struct()) { open(ODDTRNA, ">>".$opts->odd_struct_file()) || die "FATAL: Can't open ".$opts->odd_struct_file()." to save seconary structures\n\n"; print ODDTRNA $prescan_tRNA->tRNAscan_id()." (".$trna->start()."-".$trna->end()."):\n".$trna->seq()."\n".$trna->ss()."\n\n"; close(ODDTRNA); } } # continue tRNA struct parsing else { ($intron, $istart, $iend) = $self->find_intron($trna->seq(), $antiloop_index, $antiloop_end); if ($intron) { my $intron_start = 0; my $intron_end = 0; if ($trna->strand() eq "+") { $intron_start = $istart + $trna->start() - 1; $intron_end = $iend + $trna->start() - 1 } else { $intron_start = $trna->end() - $iend + 1; $intron_end = $trna->end() - $istart + 1; } $trna->add_intron($istart, $iend, $intron_start, $intron_end, "CI", $intron); } if (defined $prescan_tRNA->anticodon() and ($prescan_tRNA->anticodon() ne "???")) { if (($anticodon ne (uc($prescan_tRNA->anticodon()))) && ($opts->tscan_mode() || $opts->eufind_mode()) && ($opts->strict_params())) { $log->broadcast($prescan_tRNA->tRNAscan_id()." - anticondon conflict\t".$opts->second_pass_label().": $anticodon\tfirstpass (".$prescan_tRNA->hit_source().")". ": ".$prescan_tRNA->anticodon()."\n".$trna->seq()."\n".$trna->ss()."\n"); } } $trna->isotype($gc->get_tRNA_type($self, $trna->anticodon(), $cur_cm_file, $trna->model(), $self->cove_mode())); if ($anticodon ne "TCA" and $trna->isotype() eq "SeC") { $trna->anticodon($gc->undef_anticodon()); $trna->isotype($gc->undef_isotype()); } } # Write current tRNA to temp file for re-analysis with other models $trna_len = length($trna->seq()); &write_tRNA($global_constants->get("tmp_trnaseq_file"), $prescan_tRNA->tRNAscan_id(), "", $trna->seq(), 1); if (($trna->model() ne "SeC") && ($self->is_pseudo_gene($global_constants, $opts, $log, $trna, $prescan_tRNA->tRNAscan_id(), $global_constants->get("tmp_trnaseq_file"))) && (!$self->{skip_pseudo_filter})) { $trna->pseudo(1); } } # Fix fMet with missing first base sub fix_fMet { my $self = shift; my ($global_vars, $trna) = @_; my $opts = $global_vars->{options}; my $rescore = 0; my $inf = $trna->get_domain_model("infernal"); if ($inf->{score} > 40 and $trna->isotype() eq "Met" and $opts->bact_mode()) { if ((substr($trna->seq(), length($trna->seq())-3) eq "CCA" and substr($trna->ss(), length($trna->ss())-5) eq ".....") or (substr($trna->ss(), length($trna->ss())-5) eq "<<<..")) { if (substr($trna->ss(), 0, 1) ne ".") { if (($trna->strand() eq "+" and $trna->start() > 1) or ($trna->strand() eq "-" and $trna->end() < $trna->src_seqlen())) { $trna->seq(substr($trna->upstream(), length($trna->upstream())-1) . $trna->seq()); $trna->upstream(substr($trna->upstream(), 0, length($trna->upstream())-1)); $trna->ss(".".$trna->ss()); if ($trna->strand() eq "+") { $trna->start($trna->start() - 1); } else { $trna->end($trna->end() + 1); } my @ar_ac_pos = $trna->ar_ac_pos(); if (scalar(@ar_ac_pos) > 0) { $ar_ac_pos[0]->{rel_start} += 1; $ar_ac_pos[0]->{rel_end} += 1; $trna->ar_ac_pos(@ar_ac_pos); } $rescore = 1; } } elsif (substr($trna->ss(), 0, 4) eq ".>.>" and substr($trna->seq(), 0, 2) eq "CG") { my $pos71 = ""; if (substr($trna->seq(), length($trna->seq())-3) eq "CCA" and substr($trna->ss(), length($trna->ss())-5) eq ".....") { $pos71 = substr($trna->seq(), length($trna->ss())-6, 1); } elsif (substr($trna->ss(), length($trna->ss())-5) eq "<<<..") { $pos71 = substr($trna->seq(), length($trna->ss())-3, 1); } if (&rev_comp_seq(uc($pos71)) eq uc(substr($trna->seq(), 2, 1))) { $trna->seq(substr($trna->seq(), 1, 1).uc(substr($trna->seq(), 2, 1)).substr($trna->seq(), 3)); $trna->ss(substr($trna->ss(), 0, 2).substr($trna->ss(), 3)); if ($trna->strand() eq "+") { $trna->start($trna->start() + 1); } else { $trna->end($trna->end() - 1); } my @ar_ac_pos = $trna->ar_ac_pos(); if (scalar(@ar_ac_pos) > 0) { $ar_ac_pos[0]->{rel_start} -= 1; $ar_ac_pos[0]->{rel_end} -= 1; $trna->ar_ac_pos(@ar_ac_pos); } $rescore = 1; } } } } if ($rescore) { $self->rescore_tRNA($global_vars, $trna, $trna); } } # Fix archaeal His for incorrect bulge sub fix_His { my $self = shift; my ($global_vars, $trna) = @_; my $opts = $global_vars->{options}; my $rescore = 0; my $inf = $trna->get_domain_model("infernal"); if ($inf->{score} > 35 and $trna->isotype() eq "His" and $opts->arch_mode()) { my $pos5 = ""; my $pos68 = ""; my $mid = ""; if (substr($trna->ss(), 0, 9) eq ">>>>.>>>." and substr($trna->ss(), length($trna->ss())-9) eq "<<<.<<<<.") { $pos5 = uc(substr($trna->seq(), 4, 1)); $pos68 = uc(substr($trna->seq(), length($trna->seq())-6, 1)); $mid = substr($trna->seq(), 5, length($trna->seq())-11); } if (($pos5 eq "A" and $pos68 eq "T") or ($pos5 eq "T" and $pos68 eq "A") or ($pos5 eq "G" and $pos68 eq "C") or ($pos5 eq "C" and $pos68 eq "G") or ($pos5 eq "G" and $pos68 eq "T") or ($pos5 eq "T" and $pos68 eq "G")) { $trna->upstream($trna->upstream().substr($trna->seq(), 0, 1)); $trna->downstream(substr($trna->seq(), length($trna->seq()) - 1).$trna->downstream()); $trna->seq(substr($trna->seq(), 1, 3).$pos5.$mid.$pos68.substr($trna->seq(), length($trna->seq())-5, 4)); $trna->ss(substr($trna->ss(), 1, 3).">".substr($trna->ss(), 5, length($trna->ss())-11)."<".substr($trna->ss(), length($trna->ss())-5, 3)."."); $trna->start($trna->start() + 1); $trna->end($trna->end() - 1); my @ar_ac_pos = $trna->ar_ac_pos(); if (scalar(@ar_ac_pos) > 0) { for (my $i = 0; $i < scalar(@ar_ac_pos); $i++) { $ar_ac_pos[$i]->{rel_start} -= 1; $ar_ac_pos[$i]->{rel_end} -= 1; } $trna->ar_ac_pos(@ar_ac_pos); } $self->rescore_tRNA($global_vars, $trna, $trna); } } } # Get tRNA anticodon, isotype, and intron location sub decode_mito_tRNA_properties { my $self = shift; my ($global_vars, $trna, $prescan_tRNA, $cur_cm_file) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $gc = $global_vars->{gc}; my $log = $global_vars->{log_file}; my ($anticodon, $acodon_index, $trna_type, $intron, $istart, $iend, $antiloop_index, $antiloop_end, $trna_len, $scan_len); $anticodon = "ERR"; ($anticodon, $antiloop_index, $antiloop_end, $acodon_index) = $self->find_anticodon($opts, $trna, $gc); $trna->anticodon($anticodon); $trna->add_ac_pos($acodon_index, $acodon_index + 2); # check for problem parsing anticodon loop if (($anticodon eq $gc->undef_anticodon()) || ($trna->seq() eq 'Error')) { $trna->anticodon($gc->undef_anticodon()); $intron = 0; if ($opts->save_odd_struct()) { open(ODDTRNA, ">>".$opts->odd_struct_file()) || die "FATAL: Can't open ".$opts->odd_struct_file()." to save seconary structures\n\n"; print ODDTRNA $prescan_tRNA->tRNAscan_id()." (".$trna->start()."-".$trna->end()."):\n".$trna->seq()."\n".$trna->ss()."\n\n"; close(ODDTRNA); } } ($intron, $istart, $iend) = $self->find_intron($trna->seq(), $antiloop_index, $antiloop_end); if ($intron) { my $intron_start = 0; my $intron_end = 0; if ($trna->strand() eq "+") { $intron_start = $istart + $trna->start() - 1; $intron_end = $iend + $trna->start() - 1 } else { $intron_start = $trna->end() - $iend + 1; $intron_end = $trna->end() - $istart + 1; } } my $isotype = $gc->get_tRNA_type($self, $trna->anticodon(), $cur_cm_file, $trna->model(), 0); my $vert_mito_isotype = $gc->get_vert_mito_type($trna->anticodon()); my $model_iso = $trna->model(); my $model_ac = ""; if (length($trna->model()) > 3) { $model_iso = substr($trna->model(), 0, 3); $model_ac = substr($trna->model(), 3); } if ($model_iso ne $isotype) { if ($trna->category() eq "") { $trna->category("mito_iso_conflict"); $trna->note("(".$isotype.")"); } $log->broadcast($prescan_tRNA->tRNAscan_id().".trna".$trna->id()." - isotype/anticondon conflict\t Model: ".$trna->model()." Detected: ".$isotype.$anticodon."\n". $trna->seq()."\n".$trna->ss()."\n"); } if ($model_ac ne "" and $model_ac ne $anticodon) { if ($trna->category() eq "") { $trna->category("mito_mismatch_ac"); $trna->note("(".$model_ac.")"); } } if ($vert_mito_isotype eq "") { if ($trna->category() eq "") { $trna->category("mito_noncanonical_ac"); } } $trna->isotype($model_iso); } sub scan_noncanonical_introns { my $self = shift; my ($global_vars, $seq_name) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; my $sp_int_results = $global_vars->{sp_int_results}; my $sp_tRNAs = $global_vars->{sp_tRNAs}; my $tmp_trnaseq_file = $global_constants->get("tmp_trnaseq_file"); my $tRNA = tRNAscanSE::tRNA->new; my $tRNA_copy = tRNAscanSE::tRNA->new; my $cm_intron = tRNAscanSE::tRNA->new; my $cm_intron2 = tRNAscanSE::tRNA->new; my $previous_intron_len = 0; my $rnd2 = 0; my $add_ci = 0; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $cms_merge_file_rnd1 = $global_constants->get("temp_dir")."/tscan$$"."_intron_merge.out"; my $count = $self->run_cmsearch_intron($global_vars, $seq_name, $arrayCMscanResults, 0, $cms_merge_file_rnd1, 1); if ($cms_merge_file_rnd1 eq "") { $log->error("Fail to run infernal for $seq_name"); return 0; } $sp_int_results->clear_index(); $sp_int_results->open_file("write"); $arrayCMscanResults->open_file($cms_merge_file_rnd1); $arrayCMscanResults->get_next_cmsearch_hit($cm_intron); for (my $i = 0; $i < $sp_tRNAs->get_count(); $i++) { $rnd2 = 0; $add_ci = 0; $previous_intron_len = 0; $tRNA = $sp_tRNAs->get($i); $tRNA_copy->copy($tRNA); my $padded_seq = $tRNA->upstream().$tRNA->seq().$tRNA->downstream(); if ($cm_intron->seqname() ne $tRNA->seqname().".trna".&pad_num($tRNA->id(), 6)) { if ($tRNA->get_intron_count() == 0) { $sp_int_results->write_tRNA($tRNA); next; } else { $padded_seq = $tRNA->upstream().$tRNA->mat_seq().$tRNA->downstream(); $rnd2 = 1; $add_ci = 1; } } else { while (($cm_intron->seqname() ne "") and ($cm_intron->seqname() eq $tRNA->seqname().".trna".&pad_num($tRNA->id(), 6))) { my ($ret_value, $duplicate, $clip_seq, $intron_len) = $self->check_intron_validity($global_vars, $tRNA, $cm_intron, $padded_seq, $previous_intron_len); if ($ret_value) { $padded_seq = $clip_seq; $previous_intron_len = $intron_len; $rnd2 = 1; if ($duplicate) { $add_ci = 1; } } $arrayCMscanResults->get_next_cmsearch_hit($cm_intron); } } if ($rnd2) { my $trna_file = tRNAscanSE::Sequence->new; $trna_file->open_file($global_constants->get("tmp_trnaseq_file"), "write"); $trna_file->set_seq_info($tRNA->seqname().".trna".&pad_num($tRNA->id(), 6), $tRNA->tRNAscan_id(), length($padded_seq), $padded_seq); $trna_file->write_fasta(); $trna_file->close_file(); my $rnd2IntronScanResults = tRNAscanSE::ArrayCMscanResults->new; my $cms_merge_file_rnd2 = $global_constants->get("temp_dir")."/tscan$$"."_intron_rnd2_merge.out"; my $count = $self->run_cmsearch_intron($global_vars, $tRNA->tRNAscan_id(), $rnd2IntronScanResults, 0, $cms_merge_file_rnd2, 2); if ($cms_merge_file_rnd2 eq "") { $log->error("Fail to run infernal for ".$tRNA->tRNAscan_id()); return 0; } $previous_intron_len = 0; $rnd2IntronScanResults->open_file($cms_merge_file_rnd2); $rnd2IntronScanResults->get_next_cmsearch_hit($cm_intron2); while ($cm_intron2->seqname() ne "") { my ($ret_value, $duplicate, $clip_seq, $intron_len) = $self->check_intron_validity($global_vars, $tRNA, $cm_intron2, $padded_seq, $previous_intron_len); if ($ret_value) { $padded_seq = $clip_seq; $previous_intron_len = $intron_len; if ($duplicate) { $add_ci = 1; } } $rnd2IntronScanResults->get_next_cmsearch_hit($cm_intron2); } $rnd2IntronScanResults->close_file(); } my @ar_introns = $tRNA->ar_introns(); my $nci_count = 0; my $ci_index = -1; for (my $i = 0; $i < scalar(@ar_introns); $i++) { if ($ar_introns[$i]->{type} eq "NCI") { $nci_count++; } elsif ($ar_introns[$i]->{type} eq "CI") { $ci_index = $i; } } if ($nci_count > 0) { my $ci_seq = ""; if ($ci_index > -1) { if ($add_ci) { $ci_seq = $ar_introns[$ci_index]->{seq}; } $tRNA->remove_intron($ci_index); } $tRNA->sort_introns(); if ($add_ci) { $self->add_canonical_intron($global_vars, $tRNA, $ci_seq); } $self->decode_nci_tRNA_properties($global_vars, $tRNA); $tRNA->tRNAscan_id($tRNA->seqname().".tRNA".$tRNA->id()."-".$tRNA->isotype().$tRNA->anticodon()); $tRNA->set_default_scores(); $sp_int_results->write_tRNA($tRNA); } else { $sp_int_results->write_tRNA($tRNA_copy); } } $sp_int_results->close_file(); $arrayCMscanResults->close_file(); } sub add_canonical_intron { my $self = shift; my ($global_vars, $tRNA, $ci_seq) = @_; my $global_constants = $global_vars->{global_constants}; my $log = $global_vars->{log_file}; my $ret_value = 1; my $mat_seq = ""; my $precursor_seq = $tRNA->seq(); my @introns = $tRNA->ar_introns(); my $index = index(uc($precursor_seq), uc($ci_seq)); if ($index > -1) { $precursor_seq = substr($precursor_seq, 0, $index).lc($ci_seq).substr($precursor_seq, $index + length($ci_seq)); } for (my $i = 0; $i < scalar(@introns); $i++) { if ($i == 0) { $mat_seq = substr($precursor_seq, 0, $introns[$i]->{rel_start} - 1); } else { $mat_seq .= substr($precursor_seq, $introns[$i-1]->{rel_end}, $introns[$i]->{rel_start} - $introns[$i-1]->{rel_end} - 1); } } $mat_seq .= substr($precursor_seq, $introns[scalar(@introns)-1]->{rel_end}); if (uc($mat_seq) ne uc($tRNA->mat_seq())) { my $trna_file = tRNAscanSE::Sequence->new; $trna_file->open_file($global_constants->get("tmp_trnaseq_file"), "write"); $trna_file->set_seq_info($tRNA->seqname().".trna".&pad_num($tRNA->id(), 6), $tRNA->tRNAscan_id(), length($mat_seq), $mat_seq); $trna_file->write_fasta(); $trna_file->close_file(); my $scan_flag = 0; my $cms_output_file = ""; my $file_idx = -1; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $cms_merge_file = $global_constants->get("temp_dir")."/tscan$$"."_add_intron_merge.out"; my $cm_tRNA = tRNAscanSE::tRNA->new; foreach my $cur_cm (sort keys %{$self->{main_cm_file_path}}) { $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_add_intron_".$cur_cm.".out"; if ($self->exec_cmsearch($self->{main_cm_file_path}->{$cur_cm}, $scan_flag, $global_constants->get("tmp_trnaseq_file"), $tRNA->tRNAscan_id(), $cms_output_file, $log, $self->{cm_cutoff})) { $file_idx = $arrayCMscanResults->add_file($cms_output_file, $cur_cm); $arrayCMscanResults->merge_result_file($file_idx, 0); } else { $ret_value = 0; } } $arrayCMscanResults->write_merge_file($cms_merge_file, 1); if ($arrayCMscanResults->get_result_count() > 0) { $arrayCMscanResults->open_file($cms_merge_file); $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); if ($cm_tRNA->seqname() ne "") { if ((uc(substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 3)) ne "CCA") and (substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 4) eq "....")) { if ($cm_tRNA->strand() eq "+") { $cm_tRNA->end($cm_tRNA->end() - 3); } else { $cm_tRNA->start($cm_tRNA->start() + 3); } $cm_tRNA->seq(substr($cm_tRNA->seq(), 0, length($cm_tRNA->seq()) - 3)); $cm_tRNA->ss(substr($cm_tRNA->ss(), 0, length($cm_tRNA->ss()) - 3)); } $tRNA->ss($cm_tRNA->ss()); $tRNA->mat_seq($cm_tRNA->seq()); $tRNA->mat_ss($tRNA->ss()); $tRNA->update_domain_model("infernal", $cm_tRNA->score(), $cm_tRNA->score(), 0, 0); $tRNA->model($cm_tRNA->model()); } $arrayCMscanResults->close_file(); } } return $ret_value; } # Run Infernal cmsearch for noncanonical introns sub run_cmsearch_intron { my $self = shift; my ($global_vars, $seq_name, $arrayCMscanResults, $merge_range, $cms_merge_file, $round) = @_; my $global_constants = $global_vars->{global_constants}; my $log = $global_vars->{log_file}; my $scan_flag = 5; my $cms_output_file = ""; my $file_idx = -1; # run cmsearch foreach my $cur_cm (sort keys %{$self->{intron_cm_file_path}}) { $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_intron_".$cur_cm."_rnd".$round.".out"; if ($self->exec_cmsearch($self->{intron_cm_file_path}->{$cur_cm}, $scan_flag, $global_constants->get("tmp_trnaseq_file"), $seq_name, $cms_output_file, $log, $self->{BHB_cm_cutoff})) { $file_idx = $arrayCMscanResults->add_file($cms_output_file, $cur_cm); $arrayCMscanResults->merge_result_file($file_idx, $merge_range); } else { return ("", 0); } } $arrayCMscanResults->write_merge_file($cms_merge_file, 0); my $count = $arrayCMscanResults->get_result_count(); return $count; } sub check_intron_validity { my $self = shift; my ($global_vars, $tRNA, $cm_intron, $padded_seq, $previous_intron_len) = @_; my $global_constants = $global_vars->{global_constants}; my $log = $global_vars->{log_file}; my $ret_value = 1; my $duplicate = 0; my ($pre_intron, $intron, $post_intron, $pre_intron_seq, $intron_seq, $post_intron_seq); if ($cm_intron->ss() =~ /^([\<\-\.]{11,})(\-\<[<.]+[_.]{4,}[>.]{9,}\-[.]*\-)([-.>]+)$/) { $pre_intron = $1; $intron = $2; $post_intron = $3; my $full_intron_seq = $cm_intron->seq(); $full_intron_seq =~ s/U/T/g; $full_intron_seq =~ s/u/t/g; $cm_intron->seq($full_intron_seq); $intron_seq = substr($cm_intron->seq(), length($pre_intron), length($intron)); $pre_intron_seq = substr($cm_intron->seq(), 0, length($pre_intron)); $post_intron_seq = substr($cm_intron->seq(), length($pre_intron) + length($intron)); $intron_seq =~ s/-//g; $pre_intron_seq =~ s/-//g; $post_intron_seq =~ s/-//g; $log->debug("Found intron ".$intron_seq." for ".$tRNA->tRNAscan_id()); } else { $log->warning("Fail to parse intron sequence for ".$cm_intron->seqname()." from ".$cm_intron->seq()."\t".$cm_intron->ss()); return 0; } my $padded_full_seq = $tRNA->upstream().$tRNA->seq().$tRNA->downstream(); my ($upstream_start, $upstream_end, $downstream_start, $downstream_end); if ($tRNA->strand() eq "+") { $upstream_start = $tRNA->start() - length($tRNA->upstream()); $downstream_end = $tRNA->end() + length($tRNA->downstream()); } else { $downstream_start = $tRNA->start() - length($tRNA->downstream()); $upstream_end = $tRNA->end() + length($tRNA->upstream()); } my $clip_seq = substr($padded_seq, 0, $cm_intron->start() - $previous_intron_len + length($pre_intron_seq) - 1) . substr($padded_seq, $cm_intron->end() - $previous_intron_len - length($post_intron_seq)); my $trna_file = tRNAscanSE::Sequence->new; $trna_file->open_file($global_constants->get("tmp_trnaseq_file"), "write"); $trna_file->set_seq_info($tRNA->seqname().".trna".&pad_num($tRNA->id(), 6), $tRNA->tRNAscan_id(), length($clip_seq), $clip_seq); $trna_file->write_fasta(); $trna_file->close_file(); my $scan_flag = 0; my $cms_output_file = ""; my $file_idx = -1; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $cms_merge_file = $global_constants->get("temp_dir")."/tscan$$"."_clip_intron_merge.out"; my $cm_tRNA = tRNAscanSE::tRNA->new; foreach my $cur_cm (sort keys %{$self->{main_cm_file_path}}) { $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_clip_intron_".$cur_cm.".out"; if ($self->exec_cmsearch($self->{main_cm_file_path}->{$cur_cm}, $scan_flag, $global_constants->get("tmp_trnaseq_file"), $tRNA->tRNAscan_id(), $cms_output_file, $log, $self->{cm_cutoff})) { $file_idx = $arrayCMscanResults->add_file($cms_output_file, $cur_cm); $arrayCMscanResults->merge_result_file($file_idx, 0); } else { $ret_value = 0; } } $arrayCMscanResults->write_merge_file($cms_merge_file, 1); if ($arrayCMscanResults->get_result_count() > 0 and $ret_value) { $arrayCMscanResults->open_file($cms_merge_file); $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); while ($cm_tRNA->seqname() ne "") { $duplicate = 0; $ret_value = 1; if ((uc(substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 3)) ne "CCA") and (substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 4) eq "....")) { if ($cm_tRNA->strand() eq "+") { $cm_tRNA->end($cm_tRNA->end() - 3); } else { $cm_tRNA->start($cm_tRNA->start() + 3); } $cm_tRNA->seq(substr($cm_tRNA->seq(), 0, length($cm_tRNA->seq()) - 3)); $cm_tRNA->ss(substr($cm_tRNA->ss(), 0, length($cm_tRNA->ss()) - 3)); } my ($intron_start, $intron_end); my $upstream_len = $cm_tRNA->start() - 1; my $downstream_len = length($clip_seq) - $cm_tRNA->end(); my $seq = substr($padded_full_seq, $cm_tRNA->start() - 1, length($padded_full_seq) - $upstream_len - $downstream_len); my $pos = index(uc($seq), uc($intron_seq)); if ($pos == -1) { $ret_value = 0; $log->debug("Intron out of boundary for ".$tRNA->tRNAscan_id()." ".$intron_seq); } else { $intron_start = $pos + 1; $intron_end = length($intron_seq) + $pos; my @ar_introns = $tRNA->ar_introns(); for (my $i = 0; $i < scalar(@ar_introns); $i++) { if ($ar_introns[$i]->{rel_start} == $intron_start and $ar_introns[$i]->{rel_end} == $intron_end) { $duplicate = 1; $log->debug("Duplicate intron detected for ".$tRNA->tRNAscan_id()." ".$intron_seq); last; } elsif ($ar_introns[$i]->{type} eq "CI" and length($ar_introns[$i]->{seq}) > 40 and $ar_introns[$i]->{rel_start} < $intron_start and $ar_introns[$i]->{rel_end} > $intron_start and $ar_introns[$i]->{rel_start} < $intron_end and $ar_introns[$i]->{rel_end} > $intron_end) { $ret_value = 0; $log->debug("Inclusion of intron ".$tRNA->tRNAscan_id()." ".$intron_seq); last; } elsif ($ar_introns[$i]->{type} eq "CI" and # length($ar_introns[$i]->{seq}) > 40 and $ar_introns[$i]->{rel_start} == $intron_start and &seg_overlap($ar_introns[$i]->{rel_start}, $ar_introns[$i]->{rel_end}, $intron_start, $intron_end, 0)) { $ret_value = 0; $log->debug("Overlap with intron ".$tRNA->tRNAscan_id()." ".$intron_seq); last; } } } my ($start, $end); if ($tRNA->strand() eq "+") { $upstream_end = $upstream_start + $upstream_len - 1; $downstream_start = $downstream_end - $downstream_len + 1; $start = $upstream_end + 1; $end = $downstream_start - 1; } else { $downstream_end = $downstream_start + $downstream_len - 1; $upstream_start = $upstream_end - $upstream_len + 1; $start = $downstream_end + 1; $end = $upstream_start - 1; } my $hit_overlap = &seg_overlap($tRNA->start(), $tRNA->end(), $start, $end, 40); if ($ret_value and $hit_overlap and $cm_tRNA->score() > $tRNA->score() and length($cm_tRNA->seq()) >= $self->{min_tRNA_no_intron}) { $tRNA->upstream(substr($clip_seq, 0, $upstream_len)); $tRNA->downstream(substr($clip_seq, $cm_tRNA->end())); $tRNA->seq($seq); $tRNA->ss($cm_tRNA->ss()); $tRNA->mat_seq($cm_tRNA->seq()); $tRNA->mat_ss($tRNA->ss()); $tRNA->start($start); $tRNA->end($end); $tRNA->update_domain_model("infernal", $cm_tRNA->score(), $cm_tRNA->score(), 0, 0); $tRNA->set_default_scores(); $tRNA->model($cm_tRNA->model()); if (!$duplicate) { $tRNA->add_rel_intron($intron_start, $intron_end, "NCI", $intron_seq); } last; } else { $ret_value = 0; } $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); } $arrayCMscanResults->close_file(); } return ($ret_value, $duplicate, $clip_seq, length($intron_seq)); } sub parse_covels_hit { my $self = shift; my ($opts, $covels_hit, $r_covels_hit_elements, $prescan_tRNA) = @_; my $covels_hit_found = 0; if ($covels_hit =~ /^\s*(\S+)\s+(\d+)\s+(\d+).+: (\S+)\s*/o) { $r_covels_hit_elements->{score} = $1; $r_covels_hit_elements->{subseq_start} = $2; $r_covels_hit_elements->{subseq_end} = $3; $r_covels_hit_elements->{hit_seqname} = $4; $covels_hit_found = 1; } if ($covels_hit_found) { if ($prescan_tRNA->strand() eq "+") { $r_covels_hit_elements->{tRNA_start} = $prescan_tRNA->start() + $r_covels_hit_elements->{subseq_start} - 1; $r_covels_hit_elements->{tRNA_end} = $prescan_tRNA->start() + $r_covels_hit_elements->{subseq_end} - 1; } else { $r_covels_hit_elements->{tRNA_start} = $prescan_tRNA->start() - $r_covels_hit_elements->{subseq_start} + 1; $r_covels_hit_elements->{tRNA_end} = $prescan_tRNA->start() - $r_covels_hit_elements->{subseq_end} + 1; } return 1; } else { return 0; } } # Run covels, return hits in $covels_hit_list array sub run_covels { my $self = shift; my ($global_vars, $r_covels_hit_list, $r_cur_cm_file, $prescan_tRNA) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $stats = $global_vars->{stats}; my $log = $global_vars->{log_file}; my $scan_len = 0; my %covels_hit_elements = (); $self->set_search_params($opts, \$scan_len, $r_cur_cm_file, $self->{max_cove_tRNA_length}, $prescan_tRNA); # set covels reporting threshold below 0 (default) if -X param is # set below 0 by user my $report_cutoff = &min(0, $self->{cm_cutoff}); my $complement = "-c"; if ($opts->tscan_mode() || $opts->eufind_mode() || $opts->infernal_fp()) { $complement = ""; } # run Covels my $covels_cmd = $self->covels_bin()." $complement -w$scan_len -t$report_cutoff $$r_cur_cm_file ".$global_constants->get("tmp_trnaseq_file"); $log->broadcast($covels_cmd); my $covels_output = `$covels_cmd`; if ($? != 0) { $log->error("Covels-SE cannot be completed successfully for ".$prescan_tRNA->seqname().". (Exit Code: $?)"); print "Exit first loop at 1\n"; return 0; } my ($junk, $allhits) = split(/----------\n\n/, $covels_output); @$r_covels_hit_list = split(/\n/, $allhits); # count no. of hits over cutoff my $total_hits = 0; foreach my $covels_hit (@$r_covels_hit_list) { %covels_hit_elements = (); if (($self->parse_covels_hit($opts, $covels_hit, \%covels_hit_elements, $prescan_tRNA)) && ($covels_hit_elements{score} >= $self->{cm_cutoff})) { $total_hits++; } } # if no tRNAs detected when using a selenocysteine cove model, # try main model and run again before giving up if (($total_hits == 0) && (($$r_cur_cm_file eq $self->{Pselc_cm_file_path}) || ($$r_cur_cm_file eq $self->{Eselc_cm_file_path}))) { $$r_cur_cm_file = $self->{main_cm_file_path}->{Domain}; # re-run Covels with main model $covels_cmd = $self->covels_bin()." -w$scan_len -t$report_cutoff $$r_cur_cm_file ".$global_constants->get("tmp_trnaseq_file"); $covels_output = `$covels_cmd`; if ($? != 0) { $log->error("Covels-SE cannot be completed successfully for ".$prescan_tRNA->seqname().". (Exit Code: $?)"); print "Exit first loop at 2\n"; return 0; } ($junk,$allhits) = split(/----------\n\n/, $covels_output); @$r_covels_hit_list = split(/\n/, $allhits); } # Go thru hit list, save info for tRNA hits with sub-cutoff scores my $ct = 0; my $over_cutoff = 0; my $trna_desc = ""; foreach my $covels_hit (@$r_covels_hit_list) { %covels_hit_elements = (); if ($self->parse_covels_hit($opts, $covels_hit, \%covels_hit_elements, $prescan_tRNA)) { $ct++; if ($covels_hit_elements{score} >= $self->{cm_cutoff}) { $over_cutoff++; } else { $log->broadcast("Low covels score for ".$prescan_tRNA->tRNAscan_id().".$ct: $covels_hit_elements{score}"); $trna_desc .= "(Cove Hit#$ct: $covels_hit_elements{tRNA_start}-$covels_hit_elements{tRNA_end},". " Sc: $covels_hit_elements{score}, Len: ".(abs($covels_hit_elements{tRNA_start} - $covels_hit_elements{tRNA_end}) + 1).") "; } } } # report if no scores over 0 bit reporting threshold if ($over_cutoff == 0) { if ((!$opts->results_to_stdout()) && ($opts->eufind_mode() || $opts->tscan_mode() || $opts->use_prev_ts_run())) { $log->broadcast("Covels score(s) below cutoff for ".$prescan_tRNA->tRNAscan_id().". Skipping..."); } if ($opts->save_falsepos()) { my $fulltrnaDesc = "(Fp Hit: ".$prescan_tRNA->start()."-".$prescan_tRNA->end().", ". (abs($prescan_tRNA->start() - $prescan_tRNA->end()) + 1)." bp, Src: ".$prescan_tRNA->hit_source().") ".$trna_desc; $stats->increment_fpos_base_ct(length($prescan_tRNA->seq())); &write_tRNA($opts->falsepos_file(), $prescan_tRNA->tRNAscan_id(), $fulltrnaDesc, $prescan_tRNA->seq(), 0); } } return 1; } sub run_coves { my $self = shift; my ($log, $tmp_trnaseq_file, $seq_name, $cm_file) = @_; my ($covseq, $covss, $coves_output, $junk, @coves_lines, $sec_struct, $coves_score); my $coves_cmd = $self->{coves_bin}." -s $cm_file $tmp_trnaseq_file"; $log->broadcast($coves_cmd); $coves_output = `$coves_cmd`; if ($? != 0) { $log->error("Coves-SE cannot be completed successfully for $seq_name. (Exit Code: $?)"); return ("Error", "", -1); } ($junk, $sec_struct) = split(/----------\n\n/, $coves_output); @coves_lines = split(/\n/,$sec_struct); $covseq = ''; $covss = ''; $coves_score = -1000; $seq_name =~ s/(\W)/\\$1/g; foreach (@coves_lines) { if (/^\s+$seq_name\s([a-zA-Z\-]{1,60})\s*/) { $covseq .= $1; } if (/^\s+$seq_name\s([\.\<\>\ ]{1,60})/) { $covss .= $1; } if (/^\s*(\S+)\sbits\s:\s$seq_name/) { $coves_score = $1; } } $covss =~ s/\s//g; # take spaces out of alignment $covseq =~ s/-//g; # take '-' gaps out of seq if (($covseq eq '') || ($covss eq '')) { print STDERR "Could not complete coves successfully for $seq_name ", "because unable to parse coves secondary structure string. ", "Skipping tRNA anticodon & type prediction\n"; return ("Error", "", -1); } return ($covseq, $covss, $coves_score); } sub analyze_with_cove { my $self = shift; my ($global_vars, $prescan_tRNA, $r_curseq_trnact) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $stats = $global_vars->{stats}; my $log = $global_vars->{log_file}; my (@covels_hit_list, $cur_cm_file, $cove_confirmed_ct); my ($covseq, $covss, $coves_score); my %covels_hit_elements = (); my $covels_tRNA = undef; my $cov_hit = {}; my $rescore = 0; $cove_confirmed_ct = 0; if (!$self->run_covels($global_vars, \@covels_hit_list, \$cur_cm_file, $prescan_tRNA)) { return 0; } # Loop to parse covels tRNA hit(s) and run Coves on each tRNA foreach my $covels_hit (@covels_hit_list) { $rescore = 0; %covels_hit_elements = (); if ((!$self->parse_covels_hit($opts, $covels_hit, \%covels_hit_elements, $prescan_tRNA)) || ($covels_hit_elements{score} < $self->{cm_cutoff})) { next; } $covels_tRNA = tRNAscanSE::tRNA->new; $$r_curseq_trnact++; $covels_tRNA->id($$r_curseq_trnact); $covels_tRNA->set_covels_hit(\%covels_hit_elements); $covels_tRNA->upstream($prescan_tRNA->upstream()); $covels_tRNA->downstream($prescan_tRNA->downstream()); if (($covels_hit_elements{subseq_start} == 1) && ($covels_hit_elements{subseq_end} == $prescan_tRNA->len())) { $covels_hit_elements{tRNA_len} = $prescan_tRNA->len(); } else { # get correct subseq for coves & save to file if ($covels_hit_elements{subseq_start} < $covels_hit_elements{subseq_end}) { $covels_hit_elements{tRNA_len} = $covels_hit_elements{subseq_end} - $covels_hit_elements{subseq_start} + 1; &write_tRNA($global_constants->get("tmp_trnaseq_file"), $covels_tRNA->seqname(), " ", substr($prescan_tRNA->seq(), $covels_hit_elements{subseq_start} - 1, $covels_hit_elements{tRNA_len}), 1); if ($covels_hit_elements{subseq_start} > 1) { $covels_tRNA->upstream($covels_tRNA->upstream() . substr($prescan_tRNA->seq(), 0, $covels_hit_elements{subseq_start} - 1)); } if ($covels_hit_elements{subseq_end} < $prescan_tRNA->len()) { $covels_tRNA->downstream(substr($prescan_tRNA->seq(), $covels_hit_elements{subseq_end}) . $covels_tRNA->downstream()); } } else { $covels_hit_elements{tRNA_len} = $covels_hit_elements{subseq_start} - $covels_hit_elements{subseq_end} + 1; &write_tRNA($global_constants->get("tmp_trnaseq_file"), $covels_tRNA->seqname(), " ", &rev_comp_seq(substr($prescan_tRNA->seq(), $covels_hit_elements{subseq_end} - 1, $covels_hit_elements{tRNA_len})), 1); if ($covels_hit_elements{subseq_end} > 1) { $covels_tRNA->upstream($covels_tRNA->upstream() . &rev_comp_seq(substr($prescan_tRNA->seq(), $covels_hit_elements{subseq_start} - 1, $global_constants->get("upstream_len")))); } if ($covels_hit_elements{subseq_start} < $prescan_tRNA->len()) { $covels_tRNA->downstream(&rev_comp_seq(substr($prescan_tRNA->seq(), $covels_hit_elements{subseq_end} - $global_constants->get("downstream_len"), $global_constants->get("downstream_len")) . $covels_tRNA->downstream())); } } } $stats->increment_coves_base_ct($covels_hit_elements{tRNA_len}); ($covseq, $covss, $coves_score) = $self->run_coves($log, $global_constants->get("tmp_trnaseq_file"), $prescan_tRNA->seqname(), $cur_cm_file); $covels_tRNA->seq($covseq); $covels_tRNA->ss($covss); $covels_tRNA->update_domain_model("cove", $coves_score, $coves_score, 0, 0); if ((uc(substr($covels_tRNA->seq(), length($covels_tRNA->seq()) - 3)) ne "CCA") && (substr($covels_tRNA->ss(), length($covels_tRNA->ss()) - 4) eq "....") && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cove_cm", "eukaryota")) && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cove_cm", "general"))) { $covels_hit_elements{subseq_end} -= 3; if ($covels_tRNA->strand() eq "+") { $covels_tRNA->end($covels_tRNA->end() - 3); } else { $covels_tRNA->start($covels_tRNA->start() + 3); } $covels_tRNA->seq(substr($covels_tRNA->seq(), 0, length($covels_tRNA->seq()) - 3)); $covels_tRNA->ss(substr($covels_tRNA->ss(), 0, length($covels_tRNA->ss()) - 3)); $rescore = 1; } elsif ((uc(substr($covels_tRNA->seq(), length($covels_tRNA->seq()) - 3)) eq "CCA") && (((substr($covels_tRNA->ss(), length($covels_tRNA->ss()) - 6) eq "<.....") && (substr($covels_tRNA->seq(), length($covels_tRNA->seq()) - 5, 2) =~ /[acgtn][ACGTN]/)) || ((substr($covels_tRNA->ss(), length($covels_tRNA->ss()) - 7) eq "<......") && (substr($covels_tRNA->seq(), length($covels_tRNA->seq()) - 6, 3) =~ /[ACGTN][acgtn][ACGTN]/)) || ((substr($covels_tRNA->ss(), length($covels_tRNA->ss()) - 7) eq "<......") && (substr($covels_tRNA->seq(), length($covels_tRNA->seq()) - 6, 3) =~ /[acgtn]{2}[ACGTN]/))) && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cove_cm", "eukaryota")) && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cove_cm", "general"))) { my $trim_len = 4; if (substr($covels_tRNA->ss(), length($covels_tRNA->ss()) - 7) eq "<......" && substr($covels_tRNA->seq(), length($covels_tRNA->seq()) - 6, 3) =~ /[acgtn]{2}[ACGTN]/) { $trim_len = 5; } if ($covels_tRNA->strand() eq "+") { $covels_tRNA->end($covels_tRNA->end() - $trim_len); } else { $covels_tRNA->start($covels_tRNA->start() + $trim_len); } $covels_tRNA->seq(substr($covels_tRNA->seq(), 0, length($covels_tRNA->seq()) - $trim_len)); $covels_tRNA->seq(substr($covels_tRNA->seq(), 0, length($covels_tRNA->seq()) - 1).uc(substr($covels_tRNA->seq(), length($covels_tRNA->seq()) - 1, 1))); $covels_tRNA->ss(substr($covels_tRNA->ss(), 0, length($covels_tRNA->ss()) - $trim_len)); $rescore = 1; } if ($rescore) { my $trna_file = tRNAscanSE::Sequence->new; $trna_file->open_file($global_constants->get("tmp_trnaseq_file"), "write"); $trna_file->set_seq_info($prescan_tRNA->seqname(), $prescan_tRNA->seqname(), length($covels_tRNA->seq()), $covels_tRNA->seq()); $trna_file->write_fasta(); $trna_file->close_file(); ($covseq, $covss, $coves_score) = $self->run_coves($log, $global_constants->get("tmp_trnaseq_file"), $prescan_tRNA->seqname(), $cur_cm_file); $covels_tRNA->update_domain_model("cove", $coves_score, $coves_score, 0, 0); } # look for intron $self->decode_tRNA_properties($global_vars, $covels_tRNA, $prescan_tRNA, $cur_cm_file); $covels_tRNA->set_mature_tRNA(); $covels_tRNA->tRNAscan_id($covels_tRNA->seqname().".tRNA".$$r_curseq_trnact."-".$covels_tRNA->isotype().$covels_tRNA->anticodon()); $covels_tRNA->src_seqlen($prescan_tRNA->src_seqlen()); $covels_tRNA->src_seqid($covels_hit_elements{hit_seqname}); $covels_tRNA->hit_source($prescan_tRNA->hit_source()); $covels_tRNA->model($cur_cm_file); $covels_tRNA->ordered_seqname($prescan_tRNA->src_seqid()); $covels_tRNA->set_default_scores(); if (!$self->{CM_check_for_introns}) { $cove_confirmed_ct++; } $global_vars->{sp_int_results}->write_tRNA($covels_tRNA); } # while more covels_hits return $cove_confirmed_ct; } # Format command and run Infernal cmscan sub exec_cmscan { my $self = shift; my ($cm_db, $scan_flag, $tmp_trnaseq_file, $seq_name, $cms_output_file, $cms_tab_file, $log) = @_; my $cm_options = "-g --nohmm --toponly --notrunc"; if ($scan_flag == 1) { $cm_options = "-g --mid --notrunc"; } elsif ($scan_flag == 2) { $cm_options = "-g --mid --toponly --notrunc"; } elsif ($scan_flag == 3) { $cm_options = "-g --mid --notrunc -T ".$self->{infernal_fp_cutoff}; } elsif ($scan_flag == 4) { $cm_options = "-g --nohmm --notrunc"; } if ($self->{infernal_thread} != -1) { $cm_options .= " --cpu ".$self->{infernal_thread}; } my $cms_cmd = "$self->{cmscan_bin} $cm_options --fmt 2 --tblout $cms_tab_file -o $cms_output_file $cm_db $tmp_trnaseq_file"; $log->broadcast($cms_cmd); system($cms_cmd); if ($? != 0) { $log->error("Infernal cmscan cannot be completed successfully for ".$seq_name.". $cms_cmd (Exit Code: $? $!)"); return 0; } return 1; } # Format command and run Infernal cmsearch sub exec_cmsearch { my $self = shift; my ($cm_file, $scan_flag, $tmp_trnaseq_file, $seq_name, $cms_output_file, $log, $score_cutoff) = @_; my $cm_options = "-g --nohmm --toponly --notrunc"; if ($scan_flag == 1) { $cm_options = "-g --mid --notrunc"; } elsif ($scan_flag == 2) { $cm_options = "-g --mid --toponly --notrunc"; } elsif ($scan_flag == 3) { $cm_options = "-g --mid --notrunc -T ".$self->{infernal_fp_cutoff}; } elsif ($scan_flag == 4) { $cm_options = "-g --nohmm --notrunc"; } elsif ($scan_flag == 5) { $cm_options = "-g --max --toponly --notrunc --notextw -T ".$self->{BHB_cm_cutoff}; } elsif ($scan_flag == 6) { $cm_options = "-g --toponly --notextw"; } elsif ($scan_flag == 7) { $cm_options = "-g --max --toponly --notrunc --notextw -T 0"; } if ($scan_flag != 3 and $scan_flag != 5 and $scan_flag != 7) { if ($score_cutoff <= 10) { $cm_options .= " -T ".$score_cutoff; } } if ($self->{infernal_thread} != -1) { $cm_options .= " --cpu ".$self->{infernal_thread}; } my $cms_cmd = "$self->{cmsearch_bin} $cm_options $cm_file $tmp_trnaseq_file > $cms_output_file"; $log->broadcast($cms_cmd); system($cms_cmd); if ($? != 0) { $log->error("Infernal cmsearch cannot be completed successfully for ".$seq_name.". $cms_cmd (Exit Code: $? $!)"); return 0; } return 1; } # Run Infernal cmsearch, return results in $r_cms_hit_list array reference sub run_cmsearch { my $self = shift; my ($global_vars, $seq_name, $arrayCMscanResults, $merge_range) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $stats = $global_vars->{stats}; my $log = $global_vars->{log_file}; my $score_cutoff = -1; my $scan_flag = -1; my $cms_output_file = ""; my $file_idx = -1; my $cms_merge_file = $global_constants->get("temp_dir")."/tscan$$"."_cm_merge.out"; # run cmsearch if ($opts->tscan_mode() || $opts->eufind_mode() || $opts->infernal_fp()) { $scan_flag = 0; if ($opts->hmm_filter()) { $scan_flag = 2; } } else { $scan_flag = 4; if ($opts->hmm_filter()) { $scan_flag = 1; } } # if ($opts->mito_mode()) # { # $score_cutoff = $self->{organelle_cm_cutoff}; # } # else # { $score_cutoff = $self->{cm_cutoff}; # } foreach my $cur_cm (sort keys %{$self->{main_cm_file_path}}) { $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_cm_".$cur_cm.".out"; if ($self->exec_cmsearch($self->{main_cm_file_path}->{$cur_cm}, $scan_flag, $global_constants->get("tmp_trnaseq_file"), $seq_name, $cms_output_file, $log, $score_cutoff)) { $file_idx = $arrayCMscanResults->add_file($cms_output_file, $cur_cm); $arrayCMscanResults->merge_result_file($file_idx, $merge_range); } else { return ""; } } $arrayCMscanResults->write_merge_file($cms_merge_file, 1); my $count = $arrayCMscanResults->get_result_count(); return ($cms_merge_file, $count); } # Run Infernal for scanning truncation in predicited tRNA sub truncated_tRNA_search { my $self = shift; my ($global_vars, $seq_name) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $sp_int_results = $global_vars->{sp_int_results}; my $tmp_trnaseq_file = $global_constants->get("tmp_trnaseq_file"); my $tRNA = tRNAscanSE::tRNA->new; my $cm_tRNA = tRNAscanSE::tRNA->new; my %cms_output_file = (); my $scan_flag = 6; my $file_idx = -1; my $cms_merge_file = $global_constants->get("temp_dir")."/tscan$$"."_trunc_cm_merge.out"; my $sp_trunc_int_results = tRNAscanSE::IntResultFile->new; $sp_trunc_int_results->file_name($opts->truncated_int_result_file()); foreach my $cur_cm (sort keys %{$self->{main_cm_file_path}}) { my $count = &write_tRNAs($tmp_trnaseq_file, $sp_int_results, 1, 1, $cur_cm); if ($count > 0) { $cms_output_file{$cur_cm} = $global_constants->get("temp_dir")."/tscan$$"."_trunc_cm_".$cur_cm.".out"; if ($self->exec_cmsearch($self->{main_cm_file_path}->{$cur_cm}, $scan_flag, $global_constants->get("tmp_trnaseq_file"), $seq_name, $cms_output_file{$cur_cm}, $log, $self->{cm_cutoff})) { $file_idx = $arrayCMscanResults->add_file($cms_output_file{$cur_cm}, $cur_cm); $arrayCMscanResults->merge_result_file($file_idx, 0); } else { return ""; } } } $arrayCMscanResults->write_merge_file($cms_merge_file, 0); my @sp_indexes = $sp_int_results->get_indexes(); if ($sp_int_results->open_file("read") and $sp_trunc_int_results->open_file("write")) { $arrayCMscanResults->open_file($cms_merge_file); my $cm_model = $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); for (my $i = 0; $i < scalar(@sp_indexes); $i++) { $sp_int_results->get_tRNA($sp_indexes[$i]->[0], $tRNA); if (($cm_tRNA->seqname() ne "") and ($cm_tRNA->seqname() eq $tRNA->seqname().".t".&pad_num($tRNA->id(), 6))) { my $trunc_label = $self->check_truncation($tRNA, $cm_tRNA, $cm_model, $global_constants); $tRNA->trunc($trunc_label); $cm_model = $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); } $sp_trunc_int_results->write_tRNA($tRNA); } $sp_int_results->close_file(); $sp_trunc_int_results->close_file(); $sp_int_results->clear_index(); $global_vars->{sp_int_results} = $sp_trunc_int_results; } } sub check_truncation { my $self = shift; my ($tRNA, $trunc_tRNA, $cm_model, $global_constants) = @_; my $label = ""; if ($trunc_tRNA->trunc() eq "" or $trunc_tRNA->trunc() eq "no") {} else { if (index($trunc_tRNA->trunc(),"5'") > -1) { if ($cm_model =~/^\<\[(\d+)\]\*/) { $label = "trunc_start:".$1; } } if (index($trunc_tRNA->trunc(), "3'") > -1) { if ($cm_model =~/\*\[(\d+)\]\>$/) { my $diff = $1; if ($diff <= 3 and ((uc(substr($tRNA->mat_seq(), length($tRNA->mat_seq()) - 3)) ne "CCA" and index($trunc_tRNA->trunc(),"5'") == -1) or index($trunc_tRNA->trunc(),"5'") > -1) and ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "eukaryota")) and ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "general"))) {} else { if ($label ne "") { $label .= ","; } $label .= "trunc_end:".$diff; } } } } return $label; } # Run Infernal with isotype specific CMs for predicited tRNA sub isotype_cmsearch { my $self = shift; my ($global_vars) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $sp_int_results = $global_vars->{sp_int_results}; my $iso_int_results = $global_vars->{iso_int_results}; my $tmp_trnaseq_file = $global_constants->get("tmp_trnaseq_file"); my $tRNA = tRNAscanSE::tRNA->new; my $seqname = ""; &write_tRNAs($tmp_trnaseq_file, $sp_int_results, 1, 1, ""); my @sp_indexes = $sp_int_results->get_indexes(); if ($sp_int_results->open_file("read") && $iso_int_results->open_file("write")) { $iso_int_results->write_line(""); for (my $i = 0; $i < scalar(@sp_indexes); $i++) { $sp_int_results->get_tRNA($sp_indexes[$i]->[0], $tRNA); $seqname = $tRNA->seqname(); $iso_int_results->write_line($tRNA->seqname().".t".&pad_num($tRNA->id(), 6)); } $iso_int_results->close_file(); $sp_int_results->close_file(); } # run cmscan $self->scan_isotype_cm($global_vars, $self->{isotype_cm_db_file_path}, "cyto", $seqname); if ($opts->euk_mode() and $opts->mito_model() ne "") { $self->scan_isotype_cm($global_vars, $self->{mito_isotype_cm_db_file_path}, "mito", $seqname); } } sub scan_isotype_cm { my $self = shift; my ($global_vars, $cm_db, $type, $seq_name) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; my $iso_int_results = $global_vars->{iso_int_results}; my $tmp_trnaseq_file = $global_constants->get("tmp_trnaseq_file"); my $cmscanResults = undef; my $tRNA = tRNAscanSE::tRNA->new; my $scan_flag = 2; my $iso_result_file = $global_constants->get("temp_dir")."/tscan$$"."_iso_temp.out"; my $iso_results_out = tRNAscanSE::MultiResultFile->new; my ($cur_iso_cm, $cur_iso_cm_file); my $cms_output_file = ""; my $cms_tab_file = ""; my $line = ""; my $tRNAid = ""; my $iso_index_ct = -1; my %found_models = (); my $models = $self->get_models_from_db($cm_db); $iso_results_out->file_name($iso_result_file); $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_iso_cm.out"; $cms_tab_file = $global_constants->get("temp_dir")."/tscan$$"."_iso_cm.tab"; if ($self->exec_cmscan($cm_db, $scan_flag, $global_constants->get("tmp_trnaseq_file"), $seq_name, $cms_output_file, $cms_tab_file, $log)) { $cmscanResults = tRNAscanSE::CMscanResultFile->new($cms_tab_file, "multi"); } else { return 0; } if ($iso_int_results->open_file("read") && $iso_results_out->open_file("write")) { # header line $line = $iso_int_results->get_line(); foreach $cur_iso_cm (sort @$models) { my $model = $cur_iso_cm; if ($cur_iso_cm =~ /^arch-(\S+)/ || $cur_iso_cm =~ /^euk-(\S+)/ || $cur_iso_cm =~ /^bact-(\S+)/) { $model = $1; } if ($type eq "mito") { $line = $line."\tmito_".$model; } else { $line = $line."\t".$model; } } $iso_results_out->write_line($line); #content if ($cmscanResults->open_file()) { my $hits = $cmscanResults->get_next_tab_seq_hits(); ($tRNAid, $line) = $iso_int_results->get_next_record(); while ($tRNAid ne "") { %found_models = (); if (scalar(@$hits) > 0) { $iso_index_ct = 0; if ($tRNAid eq $hits->[0]->[1]) { foreach $cur_iso_cm (sort @$models) { if ($iso_index_ct < scalar(@$hits)) { if ($cur_iso_cm eq $hits->[$iso_index_ct]->[0]) { if (!defined $found_models{$cur_iso_cm}) { $line .= "\t".$hits->[$iso_index_ct]->[5]; $found_models{$cur_iso_cm} = 1; } $iso_index_ct++; } elsif ($cur_iso_cm lt $hits->[$iso_index_ct]->[0]) { $line .= "\t"; } elsif ($cur_iso_cm gt $hits->[$iso_index_ct]->[0]) { $iso_index_ct++; } } else { $line .= "\t"; } } $iso_results_out->write_line($line); $hits = $cmscanResults->get_next_tab_seq_hits(); ($tRNAid, $line) = $iso_int_results->get_next_record(); } elsif ($tRNAid lt $hits->[0]->[1]) { for (my $i = 0; $i < scalar(@$models); $i++) { $line .= "\t"; } $iso_results_out->write_line($line); ($tRNAid, $line) = $iso_int_results->get_next_record(); } elsif ($tRNAid gt $hits->[0]->[1]) { $hits = $cmscanResults->get_next_tab_seq_hits(); } } else { for (my $i = 0; $i < scalar(@$models); $i++) { $line .= "\t"; } $iso_results_out->write_line($line); ($tRNAid, $line) = $iso_int_results->get_next_record(); } } $cmscanResults->close_file(); } $iso_results_out->close_file(); $iso_int_results->close_file(); copy($iso_results_out->file_name(), $iso_int_results->file_name()); } } sub get_models_from_db { my $self = shift; my ($cm_db) = @_; my $line = ""; my @models = (); my $start = 0; open(FILE_IN, "$cm_db") or die "Fail to open $cm_db\n"; while ($line = ) { chomp($line); if ($line =~ /^INFERNAL/) { $start = 1; } elsif ($start and $line =~ /^NAME\s+(\S+)/) { push(@models, $1); $start = 0; } } close(FILE_IN); my @sorted_models = sort @models; return \@sorted_models; } sub rescore_tRNA_cove { my $self = shift; my ($global_vars, $sp_int_results) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; my $tmp_trnaseq_file = $global_constants->get("tmp_trnaseq_file"); # $sp_int_results->sort_records("tRNAscan_id"); &write_tRNAs($tmp_trnaseq_file, $sp_int_results, 1, 1, ""); # run cove my $cove_output_file = $global_constants->get("temp_dir")."/tscan$$"."_cove.out"; my $coves_cmd = $self->{coves_bin}." -s ".$self->{cove_cm_file_path}." ".$tmp_trnaseq_file." > ".$cove_output_file; system($coves_cmd); if ($? != 0) { $log->error("Coves-SE for rescoring tRNAs cannot be completed successfully. (Exit Code: $?)"); return ("Error", "", -1); } my $line = ""; my ($score, $trna_id); my $index = -1; my $cove_model = undef; my $new_int_result_file = $global_constants->get("temp_dir")."/tscan$$"."_sp_rescore.out"; my $int_results_out = tRNAscanSE::IntResultFile->new; my $tRNA = tRNAscanSE::tRNA->new; $int_results_out->file_name($new_int_result_file); &open_for_read(\*FILE_H, $cove_output_file); if ($sp_int_results->open_file("read") && $int_results_out->open_file("write")) { while ($line = ) { chomp($line); if ($line =~ /^\s*([0-9\.]+) bits : (.+)$/) { $score = $1; $trna_id = $2; $index = $sp_int_results->bsearch_tRNAscan_id($trna_id); if ($index > -1) { $sp_int_results->get_tRNA($sp_int_results->get_pos($index), $tRNA); $tRNA->tRNAscan_id($tRNA->seqname().".tRNA".$tRNA->id()."-".$tRNA->isotype().$tRNA->anticodon()); if ($tRNA->model() ne $self->{Pselc_cm_file_path} and $tRNA->model() ne $self->{Eselc_cm_file_path} and $tRNA->model() ne $self->{isotype_cm_file_paths}->{SeC}) { $cove_model = $tRNA->get_domain_model("cove"); if (!defined $cove_model) { $tRNA->set_domain_model("cove", $score); } elsif ($score > $cove_model->{score}) { $tRNA->update_domain_model("cove", $score, $score, 0, 0); } } $tRNA->set_default_scores(); $int_results_out->write_tRNA($tRNA); } } } $sp_int_results->close_file(); $int_results_out->close_file(); $opts->secondpass_int_result_file($new_int_result_file); $sp_int_results->clear(); $sp_int_results->file_name($new_int_result_file); } close(FILE_H); } sub rescore_tRNA { my $self = shift; my ($global_vars, $cm_tRNA, $prescan_tRNA) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; my $trna_file = tRNAscanSE::Sequence->new; $trna_file->open_file($global_constants->get("tmp_trnaseq_file"), "write"); $trna_file->set_seq_info($cm_tRNA->seqname().".trna".&pad_num($cm_tRNA->id(), 6), $cm_tRNA->seqname(), length($cm_tRNA->seq()), $cm_tRNA->seq()); $trna_file->write_fasta(); $trna_file->close_file(); my $cm_file = $self->{main_cm_file_path}->{$cm_tRNA->model()}; my $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_cm_rescore.out"; my ($hit_score, $hit_start, $hit_end, $hit_ct) = $self->cmsearch_scoring($opts, $log, $global_constants->get("tmp_trnaseq_file"), $prescan_tRNA->tRNAscan_id(), $cm_file, $cms_output_file); $cm_tRNA->update_domain_model("infernal", $hit_score, $hit_score, 0, 0); } # Runs Infernal cmsearch, and returns the score sub cmsearch_scoring { my $self = shift; my ($opts, $log, $tmp_trnaseq_file, $seq_name, $cur_cm_file, $cms_output_file) = @_; my (@cms_lines, $subseq_start, $subseq_end, $evalue, $score, $besthit_score, $line, $besthit_start, $besthit_end, $hit_ct); my $scan_flag = 0; if ($opts->arch_mode() or $opts->bact_mode()) { $scan_flag = 7; } if (!$self->exec_cmsearch($cur_cm_file, $scan_flag, $tmp_trnaseq_file, $seq_name, $cms_output_file, $log, 0)) { return 0; } @cms_lines = split(/\n/, `cat $cms_output_file`); $hit_ct = 0; $score = 0; $besthit_score = 0; foreach $line (@cms_lines) { if ($line =~ /^\s+\(\d+\)\s+\S+\s+([e0-9.\-]+)\s+([0-9.\-]+)\s+\S+\s+\S+\s+(\d+)\s+(\d+)\s+\S+\s+(\d+)\s+(\d+)\s+([+-])\s+\S+\s+\S+\s+(\S+)\s+([0-9.]+)/) { $evalue = $1; $score = $2; $subseq_start = $5; $subseq_end = $6; $hit_ct++; if ($score > $besthit_score) { $besthit_score = $score; $besthit_start = $subseq_start; $besthit_end = $subseq_end; } } } return ($besthit_score, $besthit_start, $besthit_end, $hit_ct); } sub run_first_pass_cmsearch { my $self = shift; my ($global_vars, $seq_name) = @_; my $global_constants = $global_vars->{global_constants}; my $log = $global_vars->{log_file}; my $scan_flag = 3; my $cms_output_file = ""; my $cms_merge_file = $global_constants->get("temp_dir")."/tscan$$"."_fp_cm_merge.out"; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $file_idx = -1; foreach my $cur_cm (sort keys %{$self->{main_cm_file_path}}) { $cms_output_file = $global_constants->get("temp_dir")."/tscan$$"."_fp_cm_".$cur_cm.".out"; if ($self->exec_cmsearch($self->{main_cm_file_path}->{$cur_cm}, $scan_flag, $global_constants->get("tmp_fa"), $seq_name, $cms_output_file, $log, $self->{infernal_fp_cutoff})) { $file_idx = $arrayCMscanResults->add_file($cms_output_file, $cur_cm); $arrayCMscanResults->merge_result_file($file_idx, 0); } else { return ""; } } $arrayCMscanResults->write_merge_file($cms_merge_file, 1); my $count = $arrayCMscanResults->get_result_count(); return ($cms_merge_file, $count); } sub process_fp_cmsearch_hits { my $self = shift; my ($global_vars, $start_index, $cms_merge_file, $result_count) = @_; my $global_constants = $global_vars->{global_constants}; my $fp_tRNAs = $global_vars->{fp_tRNAs}; my $stats = $global_vars->{stats}; my $line = ""; my @columns = (); my $trna = undef; my $i = 0; my $ct = 0; &open_for_read(\*FILE_H, $cms_merge_file); while ($line = ) { $ct++; chomp($line); @columns = split(/\t/, $line); $trna = tRNAscanSE::tRNA->new; $trna->seqname($columns[0]); $trna->score($columns[4]); if ($columns[3] eq "+") { $trna->start($columns[1] + $start_index); $trna->end($columns[2] + $start_index); } else { $trna->start($columns[2] + $start_index); $trna->end($columns[1] + $start_index); } $trna->strand($columns[3]); $trna->isotype("???"); $trna->anticodon("???"); $trna->ss($columns[5]); $trna->seq($columns[6]); $trna->model($columns[10]); if ($trna->start() < $trna->end()) { $trna->position($trna->start()); } else { $trna->position($global_constants->get("really_big_number") - $trna->start() + 1); } $trna->hit_source(0); my $merge = 0; if ($ct < 3 or $ct > ($result_count - 3)) { $merge = $self->merge_repeat_hit($global_vars->{stats}, $global_vars->{fp_tRNAs}, $trna); } if (!$merge) { # insert non-redundant hit in order # 'Merge_repeat_hits' depends on list being in order $i = &max(0, $i - 10); while (($i < $fp_tRNAs->get_count()) && ($fp_tRNAs->get($i)->position() < $trna->position())) { $i++; } $fp_tRNAs->insert($trna, $i); $stats->increment_trnatotal(); } } close(FILE_H); } # check current hit for redundancy against all previous hits in hitlist # # if it IS a repeat, merge it with overlapping hit and return 1 # if it doesn't overlap with any hits, return 0 sub merge_repeat_hit { my $self = shift; my ($stats, $fp_tRNAs, $trna) = @_; for (my $i = 0; $i < $fp_tRNAs->get_count(); $i++) { if ($trna->strand() eq "+") { if (($fp_tRNAs->get($i)->strand() eq "+") && (&seg_overlap($trna->start(), $trna->end(), $fp_tRNAs->get($i)->start(), $fp_tRNAs->get($i)->end(), 0))) { $fp_tRNAs->get($i)->start(&min($trna->start(), $fp_tRNAs->get($i)->start())); $fp_tRNAs->get($i)->end(&max($trna->end(), $fp_tRNAs->get($i)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source()); $fp_tRNAs->get($i)->isotype($trna->isotype()); $fp_tRNAs->get($i)->score($trna->score()); # check to see if extended endpoint overlaps i+1 hit's start boundary # if so, combine hit[i] and hit[i+1] into one hit and delete hit[i+1] if (($i != ($fp_tRNAs->get_count() - 1)) and ($fp_tRNAs->get($i+1)->strand() eq "+") and ($fp_tRNAs->get($i)->end() >= $fp_tRNAs->get($i+1)->start())) { $fp_tRNAs->get($i)->end(&max($fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i+1)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $fp_tRNAs->get($i+1)->hit_source()); $fp_tRNAs->remove($i+1); $stats->decrement_trnatotal(); } return 1; # exit loop immediately } } else # else (antisense) strand { if (($fp_tRNAs->get($i)->strand() eq "-") && (&seg_overlap($trna->end(), $trna->start(), $fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i)->start(), 0))) { $fp_tRNAs->get($i)->start(&max($trna->start(), $fp_tRNAs->get($i)->start())); $fp_tRNAs->get($i)->end(&min($trna->end(), $fp_tRNAs->get($i)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $self->{eufind_mask}); $fp_tRNAs->get($i)->isotype($trna->isotype()); $fp_tRNAs->get($i)->score($trna->score()); if (($i != ($fp_tRNAs->get_count() - 1)) and ($fp_tRNAs->get($i)->end() <= $fp_tRNAs->get($i+1)->start())) { $fp_tRNAs->get($i)->end(&min($fp_tRNAs->get($i)->end(), $fp_tRNAs->get($i+1)->end())); $fp_tRNAs->get($i)->hit_source($fp_tRNAs->get($i)->hit_source() | $fp_tRNAs->get($i+1)->hit_source()); $fp_tRNAs->remove($i+1); $stats->decrement_trnatotal(); } return 1; # exit loop immediately } } # else (antisense) strand } # for each (hit) return 0; # current hit is not a repeat } sub first_pass_scan { my $self = shift; my ($global_vars, $start_index, $seq_name) = @_; my $opts = $global_vars->{options}; my $log = $global_vars->{log_file}; if (!$opts->numt_mode()) { my ($cms_merge_file, $count) = $self->run_first_pass_cmsearch($global_vars, $seq_name); if ($cms_merge_file eq "") { $log->error("Fail to run infernal for first pass scan"); return 0; } else { $self->process_fp_cmsearch_hits($global_vars, $start_index, $cms_merge_file, $count); } } return 1; } sub analyze_alternate { my $self = shift; my ($global_vars, $seqinfo_flag, $seq_ct, $seq_name, $r_curseq_trnact) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $stats = $global_vars->{stats}; my $log = $global_vars->{log_file}; my $fp_result_file = $global_vars->{fp_result_file}; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $prescan_tRNA = tRNAscanSE::tRNA->new; my $cm_tRNA = tRNAscanSE::tRNA->new; my $over_cutoff = 0; my $cms_hit_count = 0; my ($trnaDesc, $fulltrnaDesc, $subseq_start, $subseq_end); my ($cms_confirmed_ct, $cur_cm_file); my $cm_hit = {}; $cms_confirmed_ct = 0; if (scalar(keys %{$self->{main_cm_file_path}}) == 0) { $log->error("No covariance models are found for scanning $seq_name. Please check the configuration file."); return 0; } my ($cms_merge_file, $count) = $self->run_cmsearch($global_vars, $seq_name, $arrayCMscanResults, 0); if ($cms_merge_file eq "") { $log->error("Fail to run infernal for $seq_name"); return 0; } $arrayCMscanResults->open_file($cms_merge_file); $fp_result_file->reset_current_seq(); $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_tRNA); $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); while ($cm_tRNA->seqname() ne "") { $over_cutoff = 0; while (($cm_tRNA->seqname() ne "") and ($cm_tRNA->seqname() eq $prescan_tRNA->seqname().".t".&pad_num($prescan_tRNA->id(), 6))) { $cms_hit_count++; $subseq_start = $cm_tRNA->start(); $subseq_end = $cm_tRNA->end(); $cm_tRNA->start($cm_tRNA->start() + $prescan_tRNA->start() - 1); $cm_tRNA->end($cm_tRNA->end() + $prescan_tRNA->start() - 1); if ($cm_tRNA->score() < $self->{cm_cutoff}) { $log->broadcast("Low cmsearch score for ".$prescan_tRNA->tRNAscan_id().".$cms_hit_count: ".$cm_tRNA->score()); $trnaDesc .= "(CMSearch Hit#$cms_hit_count: ".$cm_tRNA->start()."-".$cm_tRNA->end().",". " Sc: ".$cm_tRNA->score().", Len: ".(abs($cm_tRNA->start() - $cm_tRNA->end()) + 1).") "; } else { $over_cutoff++; $$r_curseq_trnact++; $cm_tRNA->id($$r_curseq_trnact); $cm_tRNA->seqname($prescan_tRNA->seqname()); $cm_tRNA->set_domain_model("infernal", $cm_tRNA->score()); if ($cm_tRNA->strand() eq "-") { my $temp = $cm_tRNA->start(); $cm_tRNA->start($cm_tRNA->end()); $cm_tRNA->end($temp); } if ((length($prescan_tRNA->seq()) >= $subseq_end + 2) && (uc(substr($prescan_tRNA->seq(), $subseq_end, 3)) eq "CCA") && (substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 4) ne "....")) { $subseq_end += 3; if ($cm_tRNA->strand() eq "+") { $cm_tRNA->end($cm_tRNA->end() + 3); } else { $cm_tRNA->start($cm_tRNA->start() - 3); } $cm_tRNA->seq($cm_tRNA->seq()."CCA"); $cm_tRNA->ss($cm_tRNA->ss()."..."); } $cm_tRNA->upstream($prescan_tRNA->upstream()); $cm_tRNA->downstream($prescan_tRNA->downstream()); if ($subseq_start > 1) { $cm_tRNA->upstream($cm_tRNA->upstream() . substr($prescan_tRNA->seq(), 0, $subseq_start - 1)); } if ($subseq_end < $prescan_tRNA->len()) { $cm_tRNA->downstream(substr($prescan_tRNA->seq(), $subseq_end) . $cm_tRNA->downstream()); } my $upstream_len = $global_constants->get("upstream_len"); my $downstream_len = $global_constants->get("downstream_len"); $cm_tRNA->upstream(substr($cm_tRNA->upstream(), &max((length($cm_tRNA->upstream()) - $upstream_len), 0))); $cm_tRNA->downstream(substr($cm_tRNA->downstream(), 0, &min(length($cm_tRNA->downstream()), $downstream_len))); $self->decode_tRNA_properties($global_vars, $cm_tRNA, $prescan_tRNA, $self->{main_cm_file_path}->{$cm_tRNA->model()}); $cm_tRNA->tRNAscan_id($cm_tRNA->seqname().".tRNA".$$r_curseq_trnact."-".$cm_tRNA->isotype().$cm_tRNA->anticodon()); $cm_tRNA->set_mature_tRNA(); $cm_tRNA->src_seqlen($prescan_tRNA->src_seqlen()); $cm_tRNA->src_seqid($cm_tRNA->seqname()); $cm_tRNA->ordered_seqname($prescan_tRNA->src_seqid()); $cm_tRNA->set_default_scores(); $cms_confirmed_ct++; $global_vars->{sp_int_results}->write_tRNA($cm_tRNA); } $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); } if ($over_cutoff == 0) { if ((!$opts->results_to_stdout()) && ($opts->eufind_mode() || $opts->tscan_mode() || $opts->use_prev_ts_run())) { $log->broadcast("CMSearch score(s) below cutoff for ".$prescan_tRNA->tRNAscan_id().". Skipping..."); } if ($opts->save_falsepos()) { $fulltrnaDesc = "(Fp Hit: ".$prescan_tRNA->start()."-".$prescan_tRNA->end().", ". (abs($prescan_tRNA->start() - $prescan_tRNA->end()) + 1)." bp, Src: ".$prescan_tRNA->hit_source().") ".$trnaDesc; $stats->increment_fpos_base_ct(length($prescan_tRNA->seq())); &write_tRNA($opts->falsepos_file(), $prescan_tRNA->tRNAscan_id(), $fulltrnaDesc, $prescan_tRNA->seq(), 0); } } $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_tRNA); } $arrayCMscanResults->close_file(); return $cms_confirmed_ct; } sub analyze_mito { my $self = shift; my ($global_vars, $seqinfo_flag, $seq_ct, $seq_name, $r_curseq_trnact) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $stats = $global_vars->{stats}; my $log = $global_vars->{log_file}; my $fp_result_file = $global_vars->{fp_result_file}; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $prescan_tRNA = tRNAscanSE::tRNA->new; my $cm_tRNA = tRNAscanSE::tRNA->new; my $over_cutoff = 0; my $cms_hit_count = 0; my ($trnaDesc, $fulltrnaDesc, $subseq_start, $subseq_end); my ($cms_confirmed_ct, $cur_cm_file); my $cm_hit = {}; $cms_confirmed_ct = 0; if (scalar(keys %{$self->{main_cm_file_path}}) == 0) { $log->error("No covariance models are found for scanning $seq_name. Please check the configuration file."); return 0; } my ($cms_merge_file, $count) = $self->run_cmsearch($global_vars, $seq_name, $arrayCMscanResults, 10); if ($cms_merge_file eq "") { $log->error("Fail to run infernal for $seq_name"); return 0; } $arrayCMscanResults->open_file($cms_merge_file); $fp_result_file->reset_current_seq(); $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_tRNA); $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); while ($cm_tRNA->seqname() ne "") { $over_cutoff = 0; while (($cm_tRNA->seqname() ne "") and ($cm_tRNA->seqname() eq $prescan_tRNA->seqname().".t".&pad_num($prescan_tRNA->id(), 6))) { $cms_hit_count++; $subseq_start = $cm_tRNA->start(); $subseq_end = $cm_tRNA->end(); $cm_tRNA->start($cm_tRNA->start() + $prescan_tRNA->start() - 1); $cm_tRNA->end($cm_tRNA->end() + $prescan_tRNA->start() - 1); if ($cm_tRNA->score() < $self->{cm_cutoff}) { $log->broadcast("Low cmsearch score for ".$prescan_tRNA->tRNAscan_id().".$cms_hit_count: ".$cm_tRNA->score()); $trnaDesc .= "(CMSearch Hit#$cms_hit_count: ".$cm_tRNA->start()."-".$cm_tRNA->end().",". " Sc: ".$cm_tRNA->score().", Len: ".(abs($cm_tRNA->start() - $cm_tRNA->end()) + 1).") "; } else { $over_cutoff++; $$r_curseq_trnact++; $cm_tRNA->id($$r_curseq_trnact); $cm_tRNA->seqname($prescan_tRNA->seqname()); $cm_tRNA->set_domain_model("infernal", $cm_tRNA->score()); if ($cm_tRNA->strand() eq "-") { my $temp = $cm_tRNA->start(); $cm_tRNA->start($cm_tRNA->end()); $cm_tRNA->end($temp); } if ((length($prescan_tRNA->seq()) >= $subseq_end + 2) && (uc(substr($prescan_tRNA->seq(), $subseq_end, 3)) eq "CCA") && (substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 4) ne "....")) { $subseq_end += 3; if ($cm_tRNA->strand() eq "+") { $cm_tRNA->end($cm_tRNA->end() + 3); } else { $cm_tRNA->start($cm_tRNA->start() - 3); } $cm_tRNA->seq($cm_tRNA->seq()."CCA"); $cm_tRNA->ss($cm_tRNA->ss()."..."); } $cm_tRNA->upstream($prescan_tRNA->upstream()); $cm_tRNA->downstream($prescan_tRNA->downstream()); if ($subseq_start > 1) { $cm_tRNA->upstream($cm_tRNA->upstream() . substr($prescan_tRNA->seq(), 0, $subseq_start - 1)); } if ($subseq_end < $prescan_tRNA->len()) { $cm_tRNA->downstream(substr($prescan_tRNA->seq(), $subseq_end) . $cm_tRNA->downstream()); } my $upstream_len = $global_constants->get("upstream_len"); my $downstream_len = $global_constants->get("downstream_len"); $cm_tRNA->upstream(substr($cm_tRNA->upstream(), &max((length($cm_tRNA->upstream()) - $upstream_len), 0))); $cm_tRNA->downstream(substr($cm_tRNA->downstream(), 0, &min(length($cm_tRNA->downstream()), $downstream_len))); $self->decode_mito_tRNA_properties($global_vars, $cm_tRNA, $prescan_tRNA, $self->{main_cm_file_path}->{$cm_tRNA->model()}); $cm_tRNA->tRNAscan_id($cm_tRNA->seqname().".tRNA".$$r_curseq_trnact."-".$cm_tRNA->isotype().$cm_tRNA->anticodon()); $cm_tRNA->set_mature_tRNA(); $cm_tRNA->src_seqlen($prescan_tRNA->src_seqlen()); $cm_tRNA->src_seqid($cm_tRNA->seqname()); $cm_tRNA->ordered_seqname($prescan_tRNA->src_seqid()); $cm_tRNA->set_default_scores(); $cms_confirmed_ct++; $global_vars->{sp_int_results}->write_tRNA($cm_tRNA); } $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); } if ($over_cutoff == 0) { if ((!$opts->results_to_stdout()) && ($opts->eufind_mode() || $opts->tscan_mode() || $opts->use_prev_ts_run())) { $log->broadcast("CMSearch score(s) below cutoff for ".$prescan_tRNA->tRNAscan_id().". Skipping..."); } if ($opts->save_falsepos()) { $fulltrnaDesc = "(Fp Hit: ".$prescan_tRNA->start()."-".$prescan_tRNA->end().", ". (abs($prescan_tRNA->start() - $prescan_tRNA->end()) + 1)." bp, Src: ".$prescan_tRNA->hit_source().") ".$trnaDesc; $stats->increment_fpos_base_ct(length($prescan_tRNA->seq())); &write_tRNA($opts->falsepos_file(), $prescan_tRNA->tRNAscan_id(), $fulltrnaDesc, $prescan_tRNA->seq(), 0); } } $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_tRNA); } $arrayCMscanResults->close_file(); return $cms_confirmed_ct; } sub analyze_with_cmsearch { my $self = shift; my ($global_vars, $seqinfo_flag, $seq_ct, $seq_name, $r_curseq_trnact) = @_; my $global_constants = $global_vars->{global_constants}; my $opts = $global_vars->{options}; my $stats = $global_vars->{stats}; my $log = $global_vars->{log_file}; my $fp_result_file = $global_vars->{fp_result_file}; my $arrayCMscanResults = tRNAscanSE::ArrayCMscanResults->new; my $prescan_tRNA = tRNAscanSE::tRNA->new; my $cm_tRNA = tRNAscanSE::tRNA->new; my $flanking_exist = 0; my $over_cutoff = 0; my $cms_hit_count = 0; my $rescore = 0; my ($trnaDesc, $fulltrnaDesc, $subseq_start, $subseq_end); my ($cms_confirmed_ct, $cur_cm_file); my $cm_hit = {}; $cms_confirmed_ct = 0; my ($cms_merge_file, $count) = $self->run_cmsearch($global_vars, $seq_name, $arrayCMscanResults, 0); if ($cms_merge_file eq "") { $log->error("Fail to run infernal for $seq_name"); return 0; } $arrayCMscanResults->open_file($cms_merge_file); $fp_result_file->reset_current_seq(); $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_tRNA); if ($fp_result_file->open_flanking("read")) { $fp_result_file->read_tRNA_flanking($prescan_tRNA); $flanking_exist = 1; } $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); while ($cm_tRNA->seqname() ne "") { $over_cutoff = 0; while (($cm_tRNA->seqname() ne "") and ($cm_tRNA->seqname() eq $prescan_tRNA->seqname().".t".&pad_num($prescan_tRNA->id(), 6))) { $rescore = 0; $cms_hit_count++; if ($prescan_tRNA->hit_source() ne "") { $cm_tRNA->hit_source($prescan_tRNA->hit_source()); } $subseq_start = $cm_tRNA->start(); $subseq_end = $cm_tRNA->end(); if ($opts->infernal_fp()) { $cm_tRNA->strand($prescan_tRNA->strand()); if ($prescan_tRNA->strand() eq "+") { $cm_tRNA->start($cm_tRNA->start() + $prescan_tRNA->start() - 1); $cm_tRNA->end($cm_tRNA->end() + $prescan_tRNA->start() - 1); } else { if ($prescan_tRNA->start() > $prescan_tRNA->end()) { $cm_tRNA->start($prescan_tRNA->start() - $cm_tRNA->start() + 1); $cm_tRNA->end($prescan_tRNA->start() - $cm_tRNA->end() + 1); } else { $cm_tRNA->start($prescan_tRNA->end() - $cm_tRNA->start() + 1); $cm_tRNA->end($prescan_tRNA->end() - $cm_tRNA->end() + 1); } } } else { $cm_tRNA->start($cm_tRNA->start() + $prescan_tRNA->start() - 1); $cm_tRNA->end($cm_tRNA->end() + $prescan_tRNA->start() - 1); } if ($cm_tRNA->score() < $self->{cm_cutoff}) { $log->broadcast("Low cmsearch score for ".$prescan_tRNA->tRNAscan_id().".$cms_hit_count: ".$cm_tRNA->score()); $trnaDesc .= "(CMSearch Hit#$cms_hit_count: ".$cm_tRNA->start()."-".$cm_tRNA->end().",". " Sc: ".$cm_tRNA->score().", Len: ".(abs($cm_tRNA->start() - $cm_tRNA->end()) + 1).") "; } else { $over_cutoff++; $$r_curseq_trnact++; $cm_tRNA->id($$r_curseq_trnact); $cm_tRNA->seqname($prescan_tRNA->seqname()); $cm_tRNA->set_domain_model("infernal", $cm_tRNA->score()); if ($cm_tRNA->strand() eq "-") { my $temp = $cm_tRNA->start(); $cm_tRNA->start($cm_tRNA->end()); $cm_tRNA->end($temp); } if ((length($prescan_tRNA->seq()) >= $subseq_end + 2) && (uc(substr($prescan_tRNA->seq(), $subseq_end, 3)) eq "CCA") && (substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 4) ne "....") && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "eukaryota")) && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "general"))) { $subseq_end += 3; if ($cm_tRNA->strand() eq "+") { $cm_tRNA->end($cm_tRNA->end() + 3); } else { $cm_tRNA->start($cm_tRNA->start() - 3); } $cm_tRNA->seq($cm_tRNA->seq()."CCA"); $cm_tRNA->ss($cm_tRNA->ss()."..."); $rescore = 1; } if ((uc(substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 3)) ne "CCA") && (substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 4) eq "....") && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "eukaryota")) && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "general"))) { $subseq_end -= 3; if ($cm_tRNA->strand() eq "+") { $cm_tRNA->end($cm_tRNA->end() - 3); } else { $cm_tRNA->start($cm_tRNA->start() + 3); } $cm_tRNA->seq(substr($cm_tRNA->seq(), 0, length($cm_tRNA->seq()) - 3)); $cm_tRNA->ss(substr($cm_tRNA->ss(), 0, length($cm_tRNA->ss()) - 3)); $rescore = 1; } elsif ((uc(substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 3)) eq "CCA") && (((substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 6) eq "<.....") && (substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 5, 2) =~ /[acgtn][ACGTN]/)) || ((substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 7) eq "<......") && (substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 6, 3) =~ /[ACGTN][acgtn][ACGTN]/)) || ((substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 7) eq "<......") && (substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 6, 3) =~ /[acgtn]{2}[ACGTN]/))) && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "eukaryota")) && ($self->{main_cm_file_path}->{Domain} ne $global_constants->get_subvalue("cm", "general"))) { my $trim_len = 4; if (substr($cm_tRNA->ss(), length($cm_tRNA->ss()) - 7) eq "<......" && substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 6, 3) =~ /[acgtn]{2}[ACGTN]/) { $trim_len = 5; } $subseq_end -= $trim_len; if ($cm_tRNA->strand() eq "+") { $cm_tRNA->end($cm_tRNA->end() - $trim_len); } else { $cm_tRNA->start($cm_tRNA->start() + $trim_len); } $cm_tRNA->seq(substr($cm_tRNA->seq(), 0, length($cm_tRNA->seq()) - $trim_len)); $cm_tRNA->seq(substr($cm_tRNA->seq(), 0, length($cm_tRNA->seq()) - 1).uc(substr($cm_tRNA->seq(), length($cm_tRNA->seq()) - 1, 1))); $cm_tRNA->ss(substr($cm_tRNA->ss(), 0, length($cm_tRNA->ss()) - $trim_len)); $rescore = 1; } if ($rescore) { $self->rescore_tRNA($global_vars, $cm_tRNA, $prescan_tRNA); } $cm_tRNA->upstream($prescan_tRNA->upstream()); $cm_tRNA->downstream($prescan_tRNA->downstream()); if ($subseq_start > 1) { $cm_tRNA->upstream($cm_tRNA->upstream() . substr($prescan_tRNA->seq(), 0, $subseq_start - 1)); } if ($subseq_end < $prescan_tRNA->len()) { $cm_tRNA->downstream(substr($prescan_tRNA->seq(), $subseq_end) . $cm_tRNA->downstream()); } if (!$opts->tscan_mode() and !$opts->eufind_mode() and !$opts->infernal_fp()) { my $upstream_len = $global_constants->get("upstream_len"); my $downstream_len = $global_constants->get("downstream_len"); $cm_tRNA->upstream(substr($cm_tRNA->upstream(), &max((length($cm_tRNA->upstream()) - $upstream_len), 0))); $cm_tRNA->downstream(substr($cm_tRNA->downstream(), 0, &min(length($cm_tRNA->downstream()), $downstream_len))); } $self->decode_tRNA_properties($global_vars, $cm_tRNA, $prescan_tRNA, $self->{main_cm_file_path}->{$cm_tRNA->model()}); $cm_tRNA->tRNAscan_id($cm_tRNA->seqname().".tRNA".$$r_curseq_trnact."-".$cm_tRNA->isotype().$cm_tRNA->anticodon()); $cm_tRNA->src_seqlen($prescan_tRNA->src_seqlen()); $cm_tRNA->src_seqid($cm_tRNA->seqname()); $cm_tRNA->ordered_seqname($prescan_tRNA->src_seqid()); $cm_tRNA->set_default_scores(); $self->fix_fMet($global_vars, $cm_tRNA); $self->fix_His($global_vars, $cm_tRNA); $cm_tRNA->set_mature_tRNA(); $cms_confirmed_ct++; $global_vars->{sp_int_results}->write_tRNA($cm_tRNA); } $arrayCMscanResults->get_next_cmsearch_hit($cm_tRNA); } if ($over_cutoff == 0) { if ((!$opts->results_to_stdout()) && ($opts->eufind_mode() || $opts->tscan_mode() || $opts->use_prev_ts_run())) { $log->broadcast("CMSearch score(s) below cutoff for ".$prescan_tRNA->tRNAscan_id().". Skipping..."); } if ($opts->save_falsepos()) { $fulltrnaDesc = "(Fp Hit: ".$prescan_tRNA->start()."-".$prescan_tRNA->end().", ". (abs($prescan_tRNA->start() - $prescan_tRNA->end()) + 1)." bp, Src: ".$prescan_tRNA->hit_source().") ".$trnaDesc; $stats->increment_fpos_base_ct(length($prescan_tRNA->seq())); &write_tRNA($opts->falsepos_file(), $prescan_tRNA->tRNAscan_id(), $fulltrnaDesc, $prescan_tRNA->seq(), 0); } } $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_tRNA); if ($flanking_exist) { $fp_result_file->read_tRNA_flanking($prescan_tRNA); } } $arrayCMscanResults->close_file(); return $cms_confirmed_ct; } sub sort_cm_hits_by_start { my $self = shift; my $cms_hits = shift; my $a_start = $a->{start}; my $b_start = $b->{start}; if ($a->{strand} == 0) { $a_start = $a->{end}; } if ($b->{strand} == 0) { $b_start = $b->{end}; } return ($a->{seqname} cmp $b->{seqname} || $a_start <=> $b_start); } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/ResultFileReader.pm0000644000543100007160000002423113116064444021045 0ustar pchanlowelab# tRNAscanSE/ResultFileReader.pm # This class contains functions to read result files produced by tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::ResultFileReader; use strict; use tRNAscanSE::tRNA; use tRNAscanSE::ArraytRNA; use tRNAscanSE::LogFile; require Exporter; our @ISA = qw(Exporter); our @EXPORT = qw(read_out_file read_ss_file read_sprinzl_pos_map read_noncanomical); sub read_out_file { my ($global_vars, $file) = @_; my $log = $global_vars->{log_file}; my $tRNAs = $global_vars->{tRNAs}; my $tRNA = undef; my %header = (); my $intron = {}; my $line = ""; my ($startpos, $endpos, $note); my @columns = (); my $domain_model = ""; $log->status("Reading tRNAs from $file"); open(OUTFILE, "$file") || die "Error: Fail to open $file\n"; while ($line = ) { chomp($line); if ($line =~ /^Name/) { $line =~ s/tRNA #/tRNA#/; } if ($line =~ /^Sequence/) { $line =~ s/Intron Bounds/Intron\tBound/; } @columns = split(/\t/, $line, -1); for (my $i = 0; $i < scalar(@columns); $i++) { $columns[$i] = &trim($columns[$i]); } if ($columns[0] =~ /^Sequence/ || $columns[0] =~ /^Name/ || $columns[0] =~ /^-----/) { if ($columns[0] =~ /^Sequence/) { for (my $i = 0; $i < scalar(@columns); $i++) { if ($columns[$i] eq "Sequence") { $header{seqname} = $i; } elsif ($columns[$i] eq "Anti") { $header{anticodon} = $i; } elsif ($columns[$i] eq "Intron") { $header{intron_start} = $i; $header{intron_end} = $i+1; } elsif ($columns[$i] eq "Inf") { $header{score} = $i; $domain_model = "infernal"; } elsif ($columns[$i] eq "Cove") { $header{score} = $i; $domain_model = "cove"; } elsif ($columns[$i] eq "HMM") { $header{hmm_score} = $i; } elsif ($columns[$i] eq "2'Str") { $header{ss_score} = $i; } elsif ($columns[$i] eq "Hit") { $header{hit_origin} = $i; } elsif ($columns[$i] eq "HMM") { $header{hmm_score} = $i; } } } elsif ($columns[0] =~ /^Name/) { for (my $i = 0; $i < scalar(@columns); $i++) { if ($columns[$i] eq "tRNA#") { $header{trna_id} = $i; } elsif ($columns[$i] eq "Begin" and !defined $header{start}) { $header{start} = $i; $header{end} = $i+1; } elsif ($columns[$i] eq "Type") { $header{isotype} = $i; } elsif ($columns[$i] eq "CM") { $header{isotype_cm} = $i; $header{isotype_score} = $i+1; } elsif ($columns[$i] eq "Note") { $header{note} = $i; } elsif ($columns[$i] eq "Count") { $header{intron_count} = $i; } } } } else { $tRNA = tRNAscanSE::tRNA->new; $tRNA->seqname($columns[$header{seqname}]); $tRNA->tRNAscan_id($columns[$header{seqname}].".trna".$columns[$header{trna_id}]); $startpos = $columns[$header{start}]; $endpos = $columns[$header{end}]; if ($startpos < $endpos) { $tRNA->start($startpos); $tRNA->end($endpos); $tRNA->strand("+"); } else { $tRNA->end($startpos); $tRNA->start($endpos); $tRNA->strand("-"); } if ($tRNA->seqname() eq "chrM" or $tRNA->seqname() eq "M" or $tRNA->seqname() eq "chrMT" or $tRNA->seqname() eq "MT") { $tRNA->category("mt"); } else { $tRNA->category("cyto"); } $tRNA->isotype($columns[$header{isotype}]); $tRNA->anticodon($columns[$header{anticodon}]); $tRNA->score($columns[$header{score}]); $tRNA->set_domain_model($domain_model, $tRNA->score()); $tRNA->tRNAscan_id($tRNA->tRNAscan_id()."-".$tRNA->isotype().$tRNA->anticodon()); if ($tRNA->isotype() eq "Undet") { $tRNA->category("und"); } $tRNA->hmm_score($columns[$header{hmm_score}]); $tRNA->ss_score($columns[$header{ss_score}]); $tRNA->update_domain_model($domain_model, $tRNA->score(), $tRNA->score(), $tRNA->hmm_score(), $tRNA->ss_score()); $note = $columns[$header{Note}]; if (index($note, "pseudo") > -1) { $tRNA->pseudo(1); } my $trunc_label = ""; if ($note =~ /(trunc_start:\d+)/) { $trunc_label = $1; } if ($note =~ /(trunc_end:\d+)/) { if ($trunc_label ne "") { $trunc_label .=" "; } $trunc_label .= $1; } $tRNA->trunc($trunc_label); if ($columns[$header{intron_start}] != 0) { my @intron_starts = split(/\,/, $columns[$header{intron_start}]); my @intron_ends = split(/\,/, $columns[$header{intron_end}]); for (my $j = 0; $j < scalar(@intron_starts); $j++) { my ($rel_start, $rel_end) = (0,0); if ($tRNA->strand() eq "+") { $rel_start = $intron_starts[$j] - $startpos + 1; $rel_end = $intron_ends[$j] - $startpos + 1; } else { $rel_start = $startpos - $intron_starts[$j] + 1; $rel_end = $startpos - $intron_ends[$j] + 1; } $tRNA->add_intron($rel_start, $rel_end, $intron_starts[$j], $intron_ends[$j], "", ""); } } $tRNAs->put($tRNA); } } close(OUTFILE); } sub read_ss_file { my ($global_vars, $file) = @_; my $log = $global_vars->{log_file}; my $tRNAs = $global_vars->{tRNAs}; my $tRNA = undef; my $intron = {}; my $line = ""; my ($startpos, $endpos); $log->status("Reading tRNAs from $file"); open(SSFILE, "$file") || die "Error: Fail to open $file\n"; while ($line = ) { if ($line =~ /^(\S+)\s+\((\d+)\-(\d+)\)\s+Length:\s(\d+)\sbp/) { if (defined $tRNA and $tRNA->tRNAscan_id() ne "") { $tRNA->set_mature_tRNA(); $tRNAs->put($tRNA); } $tRNA = tRNAscanSE::tRNA->new; $tRNA->tRNAscan_id($1); $startpos = $2; $endpos = $3; $tRNA->seqname(substr($tRNA->tRNAscan_id(), 0, rindex($tRNA->tRNAscan_id(), "."))); if ($startpos < $endpos) { $tRNA->start($startpos); $tRNA->end($endpos); $tRNA->strand("+"); } else { $tRNA->end($startpos); $tRNA->start($endpos); $tRNA->strand("-"); } if ($tRNA->seqname() eq "chrM" or $tRNA->seqname() eq "M" or $tRNA->seqname() eq "chrMT" or $tRNA->seqname() eq "MT") { $tRNA->category("mt"); } else { $tRNA->category("cyto"); } } elsif ($line =~ /^Type:\s(\S+)\s+Anticodon:\s(\S+)\sat\s(.+)\s(\(.+\))\s+Score:\s(\S+)/) { $tRNA->isotype($1); $tRNA->anticodon($2); my $pos = $3; my @ac_pos = split(/\,/, $pos); for (my $i = 0; $i < scalar(@ac_pos); $i++) { if ($ac_pos[$i] =~ /^(\d+)-(\d+)$/) { $tRNA->add_ac_pos($1, $2); } } $tRNA->score($5); $tRNA->set_domain_model("infernal", $tRNA->score()); $tRNA->tRNAscan_id($tRNA->tRNAscan_id()."-".$tRNA->isotype().$tRNA->anticodon()); if ($tRNA->isotype() eq "Undet") { $tRNA->category("und"); } } elsif ($line =~ /^HMM Sc=(\S+)\s+Sec struct Sc=(\S+)/) { my $inf_score = $3; $tRNA->hmm_score($1); $tRNA->ss_score($2); $tRNA->update_domain_model("infernal", $inf_score, $inf_score, $tRNA->hmm_score(), $tRNA->ss_score()); } elsif ($line =~ /^Possible pseudogene:\s+HMM Sc=(\S+)\s+Sec struct Sc=(\S+)/) { my $inf_score = $3; $tRNA->hmm_score($1); $tRNA->ss_score($2); $tRNA->update_domain_model("infernal", $inf_score, $inf_score, $tRNA->hmm_score(), $tRNA->ss_score()); $tRNA->pseudo(1); } elsif ($line =~ /^Possible intron: (\d+)-(\d+) \((\d+)-(\d+)\)/) { $tRNA->add_intron($1, $2, $3, $4, ""); } elsif ($line =~ /^Seq:\s(\S+)$/) { $tRNA->seq($1); } elsif ($line =~ /^Str:\s(\S+)$/) { $tRNA->ss($1); } elsif ($line =~ /^Pre:\s(\S+)$/ or $line =~ /^PRE:\s(\S+)$/ or $line =~ /^BHB:\s(\S+)$/) { my $temp = $1; $temp =~ s/[\[\]]//g; $tRNA->mat_seq($tRNA->seq()); $tRNA->seq($temp); } } if (defined $tRNA and $tRNA->tRNAscan_id() ne "") { $tRNA->set_mature_tRNA(); $tRNAs->put($tRNA); } close(SSFILE); } sub read_sprinzl_pos_map { my ($global_vars, $file) = @_; my $log = $global_vars->{log_file}; my $tRNAs = $global_vars->{tRNAs}; my $sprinzl = $global_vars->{sprinzl}; my @ar_sprinzl_pos = $sprinzl->sprinzl_pos(); my $line = ""; my $seq_name = ""; my $index = -1; $tRNAs->sort_array("tRNAscan_id"); $log->status("Reading tRNA Sprinzl position map from $file"); open(FILE_IN, "$file") or die "Error: Fail to open $file\n"; while ($line = ) { chomp($line); if ($line !~ /^#/ && $line ne "") { if ($line =~ /^>(\S+)$/) { $seq_name = $1; $index = $tRNAs->bsearch_id($seq_name, "tRNAscan_id"); $line = ; chomp($line); if ($index > -1) { $tRNAs->get($index)->sprinzl_align($line); } $line = ; chomp($line); if ($index > -1) { $tRNAs->get($index)->sprinzl_ss($line); $tRNAs->get($index)->map_sprinzl_pos(\@ar_sprinzl_pos); } $line = ; chomp($line); if ($index > -1) { if ($line ne "") { my @nc = split(//, $line, -1); for (my $j = 0; $j < scalar(@nc); $j++) { if ($nc[$j] eq " ") { $nc[$j] = ""; } $tRNAs->get($index)->add_non_canonical($j, $nc[$j]); } } else { for (my $j = 0; $j < length($tRNAs->get($index)->sprinzl_align()); $j++) { $tRNAs->get($index)->add_non_canonical($j, ""); } } } } } } close(FILE_IN); } sub read_noncanomical { my ($global_vars, $file) = @_; my $log = $global_vars->{log_file}; my $tRNAs = $global_vars->{tRNAs}; my $line = ""; my @columns = (); my $index = -1; $tRNAs->sort_array("tRNAscan_id"); $log->status("Reading tRNA noncanonical features from $file"); open(FILE_IN, "$file") or die "Fail to open $file\n"; $line = ; chomp($line); my @header = split(/\t/, $line); while ($line = ) { chomp($line); @columns = split(/\t/, $line, -1); $index = $tRNAs->bsearch_id($columns[0], "tRNAscan_id"); if ($index > -1) { for (my $i = 8; $i < scalar(@columns); $i++) { $tRNAs->get($index)->add_non_canonical($i - 8, $columns[$i]); } } } close(FILE_IN); } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/Utils.pm0000644000543100007160000001266013053260423016742 0ustar pchanlowelab# tRNAscanSE/Utils.pm # This module contains utility functions used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::Utils; use strict; require Exporter; our @ISA = qw(Exporter); our @EXPORT = qw(check_output_file open_for_read open_for_write open_for_append tempname print_filename rev_comp_seq max min seg_overlap error_exit_status trim pad pad_num); our %comp_map = ( # Complement map 'A' => 'T', 'T' => 'A', 'U' => 'A', 'G' => 'C', 'C' => 'G', 'Y' => 'R', 'R' => 'Y', 'S' => 'W', 'W' => 'S', 'M' => 'K', 'K' => 'M', 'B' => 'V', 'V' => 'B', 'H' => 'D', 'D' => 'H', 'N' => 'N', 'X' => 'X', '?' => '?', '-' => '-'); sub check_output_file { my ($fname, $prompt_for_overwrite) = @_; my ($ans, $ansline); if ((-e $fname) && ($prompt_for_overwrite)) { print STDERR "\nWARNING: $fname exists already.\n\n", " (O)verwrite file, (A)ppend to file, or (Q)uit program? "; $ansline = ; $ans = substr($ansline, 0, 1); while ($ans !~ /[AOQaoq]/) { print STDERR "\nReply (O)verwrite (A)ppend, or (Q)uit [O/A/Q]: "; $ansline = ; $ans = substr($ansline, 0, 1); } if (uc($ans) eq 'Q') { die "\ntRNAscan-SE aborted.\n\n"; } elsif (uc($ans) eq 'A') { print STDERR "\n Appending to $fname...\n"; open(FHAND,">>$fname") || die "Unable to open $fname for appending. ", "Aborting program.\n"; close(FHAND); return; # successful exit status } else { # $ans eq 'O'verwrote print STDERR "\n Overwriting $fname...\n"; } } open(FHAND, ">$fname") || die "Unable to open $fname for writing. Aborting program.\n"; close(FHAND); } sub open_for_read { my ($FHAND, $fname) = @_; open($$FHAND, "$fname") || die "Unable to open $fname for reading. Aborting program.\n"; } sub open_for_write { my ($FHAND, $fname) = @_; open($$FHAND, ">$fname") || die "Unable to open $fname for writing. Aborting program.\n"; } sub open_for_append { my ($FHAND, $fname) = @_; open ($$FHAND, ">>$fname") || die "FATAL: Unable to open output file ", &print_filename($fname), "\n\n"; } # Function: tempname # by SE, modification by TMJL # Returns a unique temporary filename. # # Normally puts temp files to /tmp. This directory can # be overridden by an environment variable TMPDIR. # sub tempname { my ($temp_dir, $exten) = @_; my ($name); $name = "$temp_dir/tscan$$"."$exten"; return $name; } sub print_filename { my ($fname) = @_; if ($fname eq "-") { $fname = "Standard output"; } return $fname; } sub rev_comp_seq { my ($seq) = @_; my ($seqlen) = length($seq); my ($i, $j, $rcseq); $rcseq = 'X' x $seqlen; # pre-extending string for efficiency for ($i = ($seqlen - 1), $j = 0; $i > -1; $i--, $j++) { substr($rcseq, $j, 1) = $comp_map{(substr($seq, $i, 1))}; } return $rcseq; } sub complement_seq { my ($seq) = @_; my $comp_seq = ""; for (my $i = 0; $i < length($seq); $i++) { $comp_seq .= $comp_map{(substr($seq, $i, 1))}; } return $comp_seq; } sub min { my ($a, $b) = @_; if ($a < $b) { return ($a); } else { return ($b); } } sub max { my ($a, $b) = @_; if ($a > $b) { return ($a); } else { return ($b); } } sub seg_overlap { my ($seg1_a, $seg1_b, $seg2_a, $seg2_b, $range) = @_; if ($range == 0) { if ((($seg1_a >= $seg2_a) && ($seg1_a <= $seg2_b)) || (($seg1_b >= $seg2_a) && ($seg1_b <= $seg2_b)) || (($seg2_a >= $seg1_a) && ($seg2_a <= $seg1_b)) || (($seg2_b >= $seg1_a) && ($seg2_b <= $seg1_b))) { return 1; } else { return 0; } } else { if ((($seg1_a >= ($seg2_a - $range)) && ($seg1_a <= ($seg2_a + $range))) || (($seg1_b >= ($seg2_b - $range)) && ($seg1_b <= ($seg2_b + $range))) || (($seg2_a >= ($seg1_a - $range)) && ($seg2_a <= ($seg1_a + $range))) || (($seg2_b >= ($seg1_b - $range)) && ($seg2_b <= ($seg1_b + $range)))) { return 1; } else { return 0; } } } sub error_exit_status { my ($prog_name, $seq_name) = @_; if ($? != 0) { print STDERR "$prog_name could not complete successfully for $seq_name.\n", "Possible memory allocation problem or missing file. (Exit code=",$?,").\n\n"; return 1; } else { return 0; } } sub trim { my $string = shift; $string =~ s/^\s+//; $string =~ s/\s+$//; return $string; } sub pad { my ($string, $len) = @_; my $remain = $len - length($string); my $value = ""; if ($remain > 0) { $value = ' ' x $remain; } $value .= $string; return $value; } sub pad_num { my ($num, $len) = @_; my $string = sprintf("%d", $num); my $remain = $len - length($string); my $value = ""; if ($remain > 0) { $value = '0' x $remain; } $value .= $string; return $value; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/ArrayCMscanResults.pm0000644000543100007160000001753313075237655021412 0ustar pchanlowelab# tRNAscanSE/ArrayCMscanResultFile.pm # This class defines the array of covariance model scanning result files used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::ArrayCMscanResults; use strict; use tRNAscanSE::CMscanResultFile; use tRNAscanSE::Utils; use tRNAscanSE::LogFile; sub new { my $class = shift; my $log = shift; my $self = {}; $self->{files} = []; $self->{indexes} = []; $self->{FILE_H} = undef; $self->{file_name} = ""; $self->{log} = $log; bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub clear { my $self = shift; $self->{file_name} = ""; @{$self->{files}} = (); @{$self->{indexes}} = (); } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub add_file { my $self = shift; my ($file_name, $type) = @_; my $file = tRNAscanSE::CMscanResultFile->new($file_name, $type); push(@{$self->{files}}, $file); return (scalar(@{$self->{files}}) - 1); } sub get_files { my $self = shift; return @{$self->{files}}; } sub get_indexes { my $self = shift; return @{$self->{indexes}}; } sub append_index { my $self = shift; my ($file_index, $record_indexes) = @_; my $record = []; for (my $i = 0; $i < scalar(@$record_indexes); $i++) { $record = []; push(@$record, $file_index); push(@$record, @{$record_indexes->[$i]}); push(@{$self->{indexes}}, $record); } } sub get_result_count { my $self = shift; return scalar(@{$self->{indexes}}); } sub merge_results { my $self = shift; my $overlap_range = shift; $self->sort_result_files(); $self->set_initial_indexes(); $self->merge_result_files($overlap_range); } sub sort_result_file { my $self = shift; my $file_idx = shift; if ($file_idx > -1 and $file_idx < scalar(@{$self->{files}})) { $self->{files}->[$file_idx]->sort_cmsearch_records(); } } sub sort_result_files { my $self = shift; for (my $i = 0; $i < scalar(@{$self->{files}}); $i++) { $self->{files}->[$i]->sort_cmsearch_records(); } } sub set_initial_indexes { my $self = shift; my $record = []; if (scalar(@{$self->{files}}) > 0) { my @record_indexes = $self->{files}->[0]->get_indexes(); $self->append_index(0, \@record_indexes); $self->{files}->[0]->clear_indexes(); } } sub merge_result_file { my $self = shift; my $file_idx = shift; my $overlap_range = shift; my @record_indexes = (); if ($file_idx > -1 and $file_idx < scalar(@{$self->{files}})) { $self->sort_result_file($file_idx); if ($file_idx == 0) { $self->set_initial_indexes(); } else { @record_indexes = $self->{files}->[$file_idx]->get_indexes(); $self->append_index($file_idx, \@record_indexes); @{$self->{indexes}} = sort sort_by_tRNAscanSE_output @{$self->{indexes}}; $self->{files}->[$file_idx]->clear_indexes(); } $self->merge_indexes($overlap_range); } } sub merge_result_files { my $self = shift; my $overlap_range = shift; my @record_indexes = (); for (my $i = 1; $i < scalar(@{$self->{files}}); $i++) { @record_indexes = $self->{files}->[$i]->get_indexes(); $self->append_index($i, \@record_indexes); @{$self->{indexes}} = sort sort_by_tRNAscanSE_output @{$self->{indexes}}; $self->merge_indexes($overlap_range); $self->{files}->[$i]->clear_indexes(); } } sub merge_indexes { my $self = shift; my $overlap_range = shift; my $hit_overlap = 0; for (my $i = scalar(@{$self->{indexes}}) - 2; $i >= 0; $i--) { $hit_overlap = eval(($self->{indexes}->[$i]->[2] eq $self->{indexes}->[$i+1]->[2]) && (&seg_overlap($self->{indexes}->[$i]->[3], $self->{indexes}->[$i]->[4], $self->{indexes}->[$i+1]->[3], $self->{indexes}->[$i+1]->[4], $overlap_range))); if ($hit_overlap) { if ($self->{indexes}->[$i]->[6] >= $self->{indexes}->[$i+1]->[6]) { splice(@{$self->{indexes}}, $i + 1, 1); } else { splice(@{$self->{indexes}}, $i, 1); } } } } sub sort_by_tRNAscanSE_output { if ((($a->[5] eq $b->[5]) && ($a->[5] eq "+")) || ($a->[5] ne $b->[5])) { return ($a->[2] cmp $b->[2] || $a->[5] cmp $b->[5] || $a->[3] <=> $b->[3] || $b->[6] <=> $a->[6]); } if (($a->[5] eq $b->[5]) && ($a->[5] eq "-")) { return ($a->[2] cmp $b->[2] || $b->[5] cmp $a->[5] || $b->[4] <=> $a->[4] || $b->[6] <=> $a->[6]); } } sub write_merge_file { my $self = shift; my $merge_file = shift; my $format = shift; $self->{file_name} = $merge_file; &open_for_write(\$self->{FILE_H}, $self->{file_name}); my $fh = $self->{FILE_H}; $self->open_result_files(); $self->parse_result_files($format); $self->close_result_files(); close($fh); } sub open_result_files { my $self = shift; for (my $i = 0; $i < scalar(@{$self->{files}}); $i++) { if (!$self->{files}->[$i]->open_file()) { $self->{log}->error("Fail to open cmsearch output file ".$self->{files}->[$i]->file_name()); } } } sub close_result_files { my $self = shift; for (my $i = 0; $i < scalar(@{$self->{files}}); $i++) { $self->{files}->[$i]->close_file(); } } sub parse_result_files { my $self = shift; my $format = shift; my $fh = $self->{FILE_H}; my $file = undef; my ($ss, $seq, $model, $nc); for (my $i = 0; $i < scalar(@{$self->{indexes}}); $i++) { $file = $self->{files}->[$self->{indexes}->[$i]->[0]]; ($ss, $seq, $model, $nc) = $file->get_cmsearch_record($self->{indexes}->[$i]->[1], $format); for (my $j = 2; $j < scalar(@{$self->{indexes}->[$i]}); $j++) { print $fh $self->{indexes}->[$i]->[$j]."\t"; } print $fh $ss."\t".$seq."\t".$model."\t".$nc."\t".$file->type()."\n"; } } sub open_file { my $self = shift; my $file_name = shift; my $success = 0; if ($file_name ne "") { $self->{file_name} = $file_name; &open_for_read(\$self->{FILE_H}, $self->{file_name}); $success = 1; } else { die "Merge result file name is not set.\n" } return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } sub get_next_cmsearch_hit { my $self = shift; my ($trna) = @_; my $fh = $self->{FILE_H}; my $line = ""; my $cm_model = ""; my @columns = (); $trna->clear(); if (defined $fh and $line = <$fh>) { chomp($line); @columns = split(/\t/, $line); $trna->seqname($columns[0]); $trna->score($columns[4]); if ($columns[3] eq "+") { $trna->start($columns[1]); $trna->end($columns[2]); } else { $trna->start($columns[2]); $trna->end($columns[1]); } $trna->strand($columns[3]); $trna->trunc($columns[5]); $trna->ss($columns[6]); $trna->seq($columns[7]); $trna->model($columns[10]); $trna->hit_source("Inf"); $cm_model = $columns[8]; } return $cm_model; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/SprinzlAlignResults.pm0000644000543100007160000000341513053260537021644 0ustar pchanlowelab# tRNAscanSE/SprinzlAlignResults.pm # This class contains functions to write Sprinzl position alignment results. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::SprinzlAlignResults; use strict; use tRNAscanSE::tRNA; use tRNAscanSE::ArraytRNA; use tRNAscanSE::LogFile; require Exporter; our @ISA = qw(Exporter); our @EXPORT = qw(write_sprinzl_pos write_sprinzl_pos_db); sub write_sprinzl_pos { my ($global_vars, $file, $tRNA) = @_; my $log = $global_vars->{log_file}; $log->status("Writing tRNA Sprinzl position $file"); open(FILE_OUT, ">$file") or die "Error: Fail to open $file\n"; print FILE_OUT "# ".$tRNA->tRNAscan_id()."\n"; print FILE_OUT "#\n"; my $sprinzl_align = $tRNA->sprinzl_align(); my @ar = $tRNA->ar_pos_sprinzl_map(); for (my $i = 0; $i < scalar(@ar); $i++) { print FILE_OUT $ar[$i]."\t".substr($sprinzl_align, $i, 1)."\n"; } close(FILE_OUT); } sub write_sprinzl_pos_db { my ($global_vars, $file) = @_; my $log = $global_vars->{log_file}; my $tRNAs = $global_vars->{tRNAs}; $tRNAs->sort_array("tRNAscan_id"); $log->status("Writing tRNA Sprinzl position db $file"); open(FILE_OUT, ">$file") or die "Error: Fail to open $file\n"; for (my $i = 0; $i < $tRNAs->get_count(); $i++) { my $tRNA = $tRNAs->get($i); print FILE_OUT "# ".$tRNA->tRNAscan_id()."\n"; print FILE_OUT "#\n"; my $sprinzl_align = $tRNA->sprinzl_align(); my @ar = $tRNA->ar_pos_sprinzl_map(); for (my $i = 0; $i < scalar(@ar); $i++) { print FILE_OUT $ar[$i]."\t".substr($sprinzl_align, $i, 1)."\n"; } print FILE_OUT "//\n\n"; } close(FILE_OUT); } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/FpScanResultFile.pm0000644000543100007160000002411513075100157021012 0ustar pchanlowelab# tRNAscanSE/FpScanResultFile.pm # This class defines the first pass scanning result file used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::FpScanResultFile; use strict; use tRNAscanSE::Utils; use tRNAscanSE::Sequence; use tRNAscanSE::tRNA; use tRNAscanSE::ArraytRNA; use tRNAscanSE::Options; sub new { my $class = shift; my $file_name = shift; my $self = { file_name => $file_name, FILE_H => undef, FLANKING_H => undef }; $self->{indexes} = []; $self->{flanking_file} = ""; bless ($self, $class); $self->reset_current_seq(); return $self; } sub DESTROY { my $self = shift; } sub clear { my $self = shift; $self->{file_name} = ""; @{$self->{indexes}} = (); $self->reset_current_seq(); } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub flanking_file { my $self = shift; if (@_) { $self->{flanking_file} = shift; } return $self->{flanking_file}; } sub get_indexes { my $self = shift; return @{$self->{indexes}}; } sub clear_indexes { my $self = shift; @{$self->{indexes}} = (); } sub get_hit_count { my $self = shift; my $count = 0; for (my $i = 0; $i < scalar(@{$self->{indexes}}); $i++) { $count += $self->{indexes}->[$i]->[2]; } return $count; } sub get_pos { my $self = shift; my $index = shift; my $pos = undef; if ($index > -1 and $index < scalar(@{$self->{indexes}})) { $pos = $self->{indexes}->[$index]->[0]; } return $pos; } sub reset_current_seq { my $self = shift; $self->{current_seq} = -1; $self->{current_record} = 0; } sub open_file { my $self = shift; my $success = 0; if ($self->{file_name} ne "") { &open_for_read(\$self->{FILE_H}, $self->{file_name}); $success = 1; } else { die "First pass result file name is not set.\n" } return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } sub init_fp_result_file { my $self = shift; my ($file) = @_; $self->{file_name} = $file; &open_for_append(\$self->{FILE_H}, $self->{file_name}); my $fh = $self->{FILE_H}; print $fh "Sequence\t\ttRNA Bounds\ttRNA\tAnti\t\n"; print $fh "Name \ttRNA #\tBegin\tEnd\tType\tCodon\tSeqID\tSeqLen\tScore\n"; print $fh "--------\t------\t-----\t---\t----\t-----\t-----\t------\t-----\n"; $self->close_file(); } sub save_firstpass_output { my $self = shift; my ($opts, $fp_tRNAs, $r_fpass_trna_base_ct, $seq_len, $seq_id) = @_; my $triplet = ""; my @source_tab = ('Inf', 'Ts', 'Eu', 'Bo'); if (!$opts->CM_mode()) { &open_for_append(\$self->{FILE_H}, $opts->out_file()); } else { &open_for_append(\$self->{FILE_H}, $self->{file_name}); } my $fh = $self->{FILE_H}; for (my $i = 0; $i < $fp_tRNAs->get_count(); $i++) { my $trna = $fp_tRNAs->get($i); $triplet = uc($trna->anticodon()); if ($opts->output_codon()) { $triplet = &rev_comp_seq($triplet); } printf $fh "%-10s\t%d\t%d\t%d\t%s\t%s\t", $trna->seqname(), $i + 1, $trna->start(), $trna->end(), $trna->isotype(), $triplet; # save intron bounds if not doing covariance model analysis if (!$opts->CM_mode()) { if ($trna->get_intron_count() > 0) { my @ar_introns = $trna->ar_introns(); printf $fh "%d\t%d\t", $ar_introns[0]->{rel_start}, $ar_introns[0]->{rel_end}; } else { printf $fh "0\t0\t"; } printf $fh "%.2f", $trna->score(); } # save seq id number and source seq length if needed for covariance model analysis else { printf $fh "%d\t%d\t%.2f", $seq_id, $seq_len, $trna->score(); if ($trna->model() ne "") { printf $fh "\t%s", $trna->model(); } else { printf $fh "\tnone"; } } if ($opts->save_source()) { print $fh "\t", $source_tab[$trna->hit_source()]; } print $fh "\n"; $$r_fpass_trna_base_ct += abs($trna->end() - $trna->start()) + 1; } $self->close_file(); } # Create dummy first-pass result file with all sequences sub prep_for_secpass_only { my $self = shift; my ($opts, $stats, $seq_file) = @_; $seq_file->open_file($opts->fasta_file(), "read"); &open_for_append(\$self->{FILE_H}, $self->{file_name}); my $fh = $self->{FILE_H}; # Don't look for a specific Seq number while ($seq_file->read_fasta($opts, 0)) { print $fh $seq_file->seq_name()."\t1\t1\t".$seq_file->seq_length()."\t???\t???\t".$seq_file->seq_id()."\t".$seq_file->seq_length()." C none\n"; $stats->increment_numscanned(); } $self->close_file(); $seq_file->close_file(); } sub index_results { my $self = shift; my ($r_seqinfo_flag) = @_; my $line = ""; my $filepos = undef; my $line_ct = 0; my $prev_seqname = ""; my $seqname = ""; my $record = []; if ($self->open_file()) { my $fh = $self->{FILE_H}; $filepos = tell($fh); while ($line = <$fh>) { if ($line =~ /Type\tCodon\tSeqID\tSeqLen/) { # Column header present if we record seqID's and lengths $$r_seqinfo_flag = 1; } elsif ($line =~ /^(\S+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(\S+)\s+(\S+)\s+(\d+)\s+(\d+)\s+(\S+)\s+(\S+)/o) { $seqname = $1; if ($seqname ne $prev_seqname) { $record = []; push(@$record, $filepos); push(@$record, $seqname); push(@$record, 0); push(@{$self->{indexes}}, $record); if ($prev_seqname ne "") { $self->{indexes}->[scalar(@{$self->{indexes}})-2]->[2] = $line_ct; } $prev_seqname = $seqname; $line_ct = 0; } $line_ct++; } $filepos = tell($fh); } if ($prev_seqname ne "") { $self->{indexes}->[scalar(@{$self->{indexes}})-1]->[2] = $line_ct; } $self->close_file(); } } sub get_next_tRNA_candidate { my $self = shift; my ($opts, $seqinfo_flag, $seq_ct, $trna) = @_; my $fh = $self->{FILE_H}; my $line = ""; my $padding = $opts->padding(); my ($trnact, $hit_source); $trna->clear(); my $record = $self->{indexes}->[$self->{current_seq}]; if ($self->{current_seq} != $seq_ct) { $self->{current_seq} = $seq_ct; $self->{current_record} = 0; $record = $self->{indexes}->[$seq_ct]; seek($fh, $record->[0], 0); } if (defined $fh and $line = <$fh> and ($self->{current_record} < $record->[2])) { if ($line =~ /^(\S+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(\S+)\s+(\S+)\s+(\d+)\s+(\d+)\s+(\S+)\s+(\S+)/o) { $trna->seqname($1); $trnact = $2; $trna->id($trnact); $trna->tRNAscan_id($trna->seqname().".t".$trnact); $trna->start($3); # trna subseq absolute start index $trna->end($4); # trna subseq absolute end index $trna->isotype($5); $trna->anticodon($6); $trna->src_seqid($7); $trna->src_seqlen($8); $trna->score($9); $trna->model($10); $hit_source = $'; $hit_source =~ s/[\s\t\n]//g; $trna->hit_source($hit_source); # if seqinfo_flag not set, file does not have SeqID info in # 7th column of output, don't mistake number read for SeqID if (!$seqinfo_flag) { $trna->src_seqid(0); } if ($trna->end() > $trna->start()) { $trna->strand("+"); # pad ends of sequence only if EufindtRNA or Infernal first-pass is being used # and $seqinfo_flag is set (we know the seq lengths) if (($opts->eufind_mode() || $opts->infernal_fp()) && $seqinfo_flag) { $trna->start(&max(1, $trna->start() - $padding)); $trna->end(&min($trna->src_seqlen(), $trna->end() + $padding)); } } else { $trna->strand("-"); if (($opts->eufind_mode() || $opts->infernal_fp()) && $seqinfo_flag) { $trna->start(&min($trna->src_seqlen(), $trna->start() + $padding)); $trna->end(&max(1, $trna->end() - $padding)); } } if ($trna->end() == $trna->start()) { print STDERR "Error reading $self->{file_name}: tRNA of length 0\n"; } } $self->{current_record}++; } } sub open_flanking { my $self = shift; my $mode = shift; my $success = 0; if ($self->{flanking_file} ne "") { if ($mode eq "write") { &open_for_write(\$self->{FLANKING_H}, $self->{flanking_file}); } else { &open_for_read(\$self->{FLANKING_H}, $self->{flanking_file}); } $success = 1; } else { die "First pass flanking file name is not set.\n" } return $success; } sub close_flanking { my $self = shift; if (defined $self->{FLANKING_H}) { close($self->{FLANKING_H}); } } sub write_tRNA_flanking { my $self = shift; my $trna = shift; if (defined $self->{FLANKING_H}) { my $fh = $self->{FLANKING_H}; print $fh $trna->seqname()."\t".$trna->id()."\t".$trna->seq()."\t".$trna->upstream()."\t".$trna->downstream()."\n"; } } sub read_tRNA_flanking { my $self = shift; my $trna = shift; my $fh = $self->{FLANKING_H}; my $line = ""; if (defined $fh and $line = <$fh>) { chomp($line); my @columns = split(/\t/, $line); if ($trna->seqname() eq $columns[0] and $trna->id() == $columns[1]) { $trna->seq($columns[2]); $trna->upstream($columns[3]); $trna->downstream($columns[4]); } } } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/CMscanResultFile.pm0000644000543100007160000002707113075240134021010 0ustar pchanlowelab# tRNAscanSE/CMscanResultFile.pm # This class defines the covariance model scanning result file used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::CMscanResultFile; use strict; use tRNAscanSE::Utils; sub new { my $class = shift; my $file_name = shift; my $type = shift; my $self = { file_name => $file_name, type => $type, FILE_H => undef }; $self->{indexes} = []; bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub clear { my $self = shift; $self->{file_name} = ""; $self->{type} = ""; @{$self->{indexes}} = (); } sub file_name { my $self = shift; if (@_) { $self->{file_name} = shift; } return $self->{file_name}; } sub type { my $self = shift; if (@_) { $self->{type} = shift; } return $self->{type}; } sub get_indexes { my $self = shift; return @{$self->{indexes}}; } sub clear_indexes { my $self = shift; @{$self->{indexes}} = (); } sub get_pos { my $self = shift; my $index = shift; my $pos = undef; if ($index > -1 and $index < scalar(@{$self->{indexes}})) { $pos = $self->{indexes}->[$index]->[0]; } return $pos; } sub open_file { my $self = shift; my $success = 0; if ($self->{file_name} ne "") { &open_for_read(\$self->{FILE_H}, $self->{file_name}); $success = 1; } else { die "$self->{type} result file name is not set.\n" } return $success; } sub close_file { my $self = shift; if (defined $self->{FILE_H}) { close($self->{FILE_H}); } } sub sort_cmsearch_records { my $self = shift; my $line = ""; my $filepos = undef; my $record = []; my @indexes = (); my $seq_name = ""; my $score = 0; my $start = 0; my $end = 0; my $strand = ""; my $trunc = ""; my $pos = 0; if ($self->open_file("read")) { my $fh = $self->{FILE_H}; $filepos = tell($fh); while ($line = <$fh>) { if ($line =~ /Hit alignments:/) { $start = 1; } if ($start) { if ($line =~ /^>>\s*(\S+)/) { $seq_name = $1; $pos = $filepos; } elsif ($line =~ /^\s+\(\d+\)\s+\S+\s+([e0-9.\-]+)\s+([0-9.\-]+)\s+\S+\s+\S+\s+(\d+)\s+(\d+)\s+\S+\s+(\d+)\s+(\d+)\s+([+-])\s+\S+\s+\S+\s+(\S+)\s+([0-9.]+)/) { $score = $2; $start = $5; $end = $6; $strand = $7; $trunc = $8; if ($strand eq "-") { my $temp = $start; $start = $end; $end = $temp; } if ($trunc eq "no") { $trunc = ""; } $record = []; push(@$record, $pos); push(@$record, $seq_name); push(@$record, $start); push(@$record, $end); push(@$record, $strand); push(@$record, $score); push(@$record, $trunc); push(@indexes, $record); } } $filepos = tell($fh); } $self->close_file(); } @{$self->{indexes}} = sort sort_by_tRNAscanSE_output @indexes; } sub sort_by_tRNAscanSE_output { if ((($a->[4] eq $b->[4]) && ($a->[4] eq "+")) || ($a->[4] ne $b->[4])) { return ($a->[1] cmp $b->[1] || $a->[4] cmp $b->[4] || $a->[2] <=> $b->[2] || $b->[5] <=> $a->[5]); } if (($a->[4] eq $b->[4]) && ($a->[4] eq "-")) { return ($a->[1] cmp $b->[1] || $b->[4] cmp $a->[4] || $b->[3] <=> $a->[3] || $b->[5] <=> $a->[5]); } } sub sort_by_model { if ((($a->[4] eq $b->[4]) && ($a->[4] eq "+")) || ($a->[4] ne $b->[4])) { return ($a->[1] cmp $b->[1] || $a->[0] cmp $b->[0] || $b->[5] <=> $a->[5] || $a->[4] cmp $b->[4] || $a->[2] <=> $b->[2]); } if (($a->[4] eq $b->[4]) && ($a->[4] eq "-")) { return ($a->[1] cmp $b->[1] || $a->[0] cmp $b->[0] || $b->[5] <=> $a->[5] || $b->[4] cmp $a->[4] || $b->[3] <=> $a->[3]); } } sub get_cmsearch_record { my $self = shift; my $filepos = shift; my $format = shift; my $fh = $self->{FILE_H}; my $line = ""; my $seq_name = ""; my $score = 0; my $start = 0; my $end = 0; my $strand = ""; my $seq_line = ""; my $nc_line = ""; my $ss = ""; my $seq = ""; my $model = ""; my $nc = ""; seek($fh, $filepos, 0); while ($line = <$fh>) { chomp($line); if (index($line, "Internal CM pipeline") > -1) { last; } elsif ($line =~ /^>>\s*(\S+)/) { if ($seq_name ne "") { last; } $seq_name = $1; } elsif ($line =~ /^\s+\(\d+\)\s+\S+\s+([e0-9.\-]+)\s+([0-9.\-]+)\s+\S+\s+\S+\s+(\d+)\s+(\d+)\s+\S+\s+(\d+)\s+(\d+)\s+([+-])\s+\S+\s+\S+\s+(\S+)\s+([0-9.]+)/) { $score = $2; $start = $5; $end = $6; $strand = $7; if ($strand eq "-") { my $temp = $start; $start = $end; $end = $temp; } } # Parse model structure line elsif ($line =~ /^(.+) NC$/) { $nc_line = $1; } elsif ($line =~ /^\s{5,}([(),<>._\-,\[\]\{\}\:\~]{1,250}) CS$/) { $ss .= $1; # Parse model sequence line $line = <$fh>; if ($line =~ /^\s+\S+\s+\d+\s+([a-zA-Z\.0-9\>\<\[\]\*]{1,250})\s+\d+/) { $model .= $1; } # Parse target sequence line $line = <$fh>; $line = <$fh>; $line =~ s/\*\[0\]\*/-----/g; if (($line =~ /^\s+\S+\s+\d+\s+([a-zA-Z\-]{1,250})\s+\d+/) || ($line =~ /^\s+\S+\s+\-\s+([a-zA-Z\-]{1,250})\s+\-/)) { $seq_line = $1; $seq .= $seq_line; # NC line $nc .= substr($nc_line, length($nc_line) - length($seq_line)); } # Advance to next set of alignment info $line = <$fh>; } elsif ($line =~ /^(.+) PP$/) { } elsif ($line =~ /^(.+) RF$/) { } } if ($format) { ($ss, $seq) = $self->format_cmsearch_output($ss, $seq, $nc); } return ($ss, $seq, $model, $nc); } sub format_cmsearch_output { my $self = shift; my $cmsearch_ss = shift; my $cmsearch_seq = shift; my $cmsearch_nc = shift; $cmsearch_seq =~ s/U/T/g; $cmsearch_seq =~ s/u/t/g; $cmsearch_ss = $self->fix_mismatch_ss($cmsearch_ss, $cmsearch_seq, $cmsearch_nc); for (my $index = 0; $index < length($cmsearch_seq); $index++) { if (substr($cmsearch_seq, $index, 1) eq '-') { substr($cmsearch_seq, $index, 1) = '*'; if (length($cmsearch_ss) > $index) { substr($cmsearch_ss, $index, 1) = '*'; } } } $cmsearch_seq =~ s/\*//g; $cmsearch_ss =~ s/\*//g; $cmsearch_ss =~ s/[,_\-:]/./g; $cmsearch_ss =~ s/[>)]/@/g; $cmsearch_ss =~ s/[(<]/>/g; $cmsearch_ss =~ s/@/" or substr($cmsearch_ss, $pos, 1) eq ")") { push(@right, $pos); $left_index = scalar(@left) - 1; while (($pairs{$left_index} > -1) && ($left_index > -1)) { $left_index--; } if (($left_index > -1) && ($pairs{$left_index} == -1)) { $pairs{$left_index} = scalar(@right) - 1; } } } foreach $left_index (sort keys %pairs) { my $left_base = uc(substr($cmsearch_seq, $left[$left_index], 1)); my $right_base = uc(substr($cmsearch_seq, $right[$pairs{$left_index}], 1)); if (($left_base eq "A" and $right_base ne "U" and $right_base ne "T") || ($left_base eq "T" and $right_base ne "A" and $right_base ne "G") || ($left_base eq "U" and $right_base ne "A" and $right_base ne "G") || ($left_base eq "G" and $right_base ne "C" and $right_base ne "U" and $right_base ne "T") || ($left_base eq "C" and $right_base ne "G") || ($left_base eq "-") || ($right_base eq "-")) { substr($cmsearch_ss, $left[$left_index], 1) = "."; substr($cmsearch_ss, $right[$pairs{$left_index}], 1) = "."; } } return $cmsearch_ss; } sub get_next_tab_seq_hits { my $self = shift; my $line = ""; my $filepos = undef; my $record = []; my @hits = (); my $seq_name = ""; my $score = 0; my $start = 0; my $end = 0; my $strand = ""; my @columns = (); my $last_seq = ""; my $fh = $self->{FILE_H}; $filepos = tell($fh); while ($line = <$fh>) { chomp($line); if ($line !~ /^#/) { @columns = split(/\s+/, $line); if ($columns[3] ne $last_seq) { if (scalar(@hits) > 0) { seek($fh, $filepos, 0); last; } $last_seq = $columns[3]; } $start = $columns[9]; $end = $columns[10]; $strand = $columns[11]; if ($strand eq "-") { my $temp = $start; $start = $end; $end = $temp; } $record = []; push(@$record, $columns[1]); push(@$record, $columns[3]); push(@$record, $start); push(@$record, $end); push(@$record, $strand); push(@$record, $columns[16]); push(@hits, $record); } $filepos = tell($fh); } my @sorted_hits = sort sort_by_model @hits; return \@sorted_hits; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/tRNA.pm0000644000543100007160000010320413160075502016442 0ustar pchanlowelab# tRNAscanSE/tRNA.pm # This class contains parameters and functions describing a tRNA gene used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia Chan and Todd Lowe # -------------------------------------------------------------- # package tRNAscanSE::tRNA; use strict; use tRNAscanSE::SprinzlPos; use constant TYPE2_TRNA => { Eukaryota => "Leu;Ser", Archaea => "Leu;Ser", Bacteria => "Leu;Ser;Tyr" }; use constant { _seqname => 0, _ordered_seqname => 1, _start => 2, _end => 3, _strand => 4, _start2 => 5, _end2 => 6, _strand2 => 7, _start3 => 8, _end3 => 9, _strand3 => 10, _position => 11, _id => 12, _tRNAscan_id => 13, _gtrnadb_id => 14, _extdb_id => 15, _isotype => 16, _anticodon => 17, _ar_ac_pos => 18, _ar_introns => 19, _model => 20, _clade => 21, _score => 22, _mat_score => 23, _hmm_score => 24, _ss_score => 25, _h_domain_models => 26, _seq => 27, _mat_seq => 28, _mat_ss => 29, _ss => 30, _sprinzl_align => 31, _sprinzl_ss => 32, _pseudo => 33, _trunc => 34, _category => 35, _upstream => 36, _downstream => 37, _hit_source => 38, _src_seqid => 39, _src_seqlen => 40, _ar_multi_models => 41, _ar_pos_sprinzl_map => 42, _h_sprinzl_pos_map => 43, _ar_non_canonical => 44, _note => 45 }; sub new { my $class = shift; my $self = {}; initialize($self); bless ($self, $class); return $self; } sub DESTROY { my $self = shift; } sub initialize { my $self = shift; $self->{data} = []; $self->{data}->[_seqname] = ""; $self->{data}->[_ordered_seqname] = 0; $self->{data}->[_start] = 0; $self->{data}->[_end] = 0; $self->{data}->[_strand] = ""; $self->{data}->[_start2] = 0; $self->{data}->[_end2] = 0; $self->{data}->[_strand2] = ""; $self->{data}->[_start3] = 0; $self->{data}->[_end3] = 0; $self->{data}->[_strand3] = ""; $self->{data}->[_position] = 0; $self->{data}->[_id] = 0; $self->{data}->[_tRNAscan_id] = ""; $self->{data}->[_gtrnadb_id] = ""; $self->{data}->[_extdb_id] = ""; $self->{data}->[_isotype] = ""; $self->{data}->[_anticodon] = ""; $self->{data}->[_ar_ac_pos] = []; $self->{data}->[_ar_introns] = []; $self->{data}->[_model] = ""; $self->{data}->[_clade] = ""; $self->{data}->[_score] = 0; $self->{data}->[_mat_score] = 0; $self->{data}->[_hmm_score] = 0; $self->{data}->[_ss_score] = 0; $self->{data}->[_h_domain_models] = {}; $self->{data}->[_seq] = ""; $self->{data}->[_mat_seq] = ""; $self->{data}->[_mat_ss] = ""; $self->{data}->[_ss] = ""; $self->{data}->[_sprinzl_align] = ""; $self->{data}->[_sprinzl_ss] = ""; $self->{data}->[_pseudo] = 0; $self->{data}->[_trunc] = ""; $self->{data}->[_category] = ""; $self->{data}->[_upstream] = ""; $self->{data}->[_downstream] = ""; $self->{data}->[_hit_source] = ""; $self->{data}->[_src_seqid] = 0; $self->{data}->[_src_seqlen] = 0; $self->{data}->[_ar_multi_models] = []; $self->{data}->[_ar_pos_sprinzl_map] = []; $self->{data}->[_h_sprinzl_pos_map] = {}; $self->{data}->[_ar_non_canonical] = []; $self->{data}->[_note] = ""; } sub clear { my $self = shift; @{$self->{data}} = (); $self->{data}->[_seqname] = ""; $self->{data}->[_ordered_seqname] = 0; $self->{data}->[_start] = 0; $self->{data}->[_end] = 0; $self->{data}->[_strand] = ""; $self->{data}->[_start2] = 0; $self->{data}->[_end2] = 0; $self->{data}->[_strand2] = ""; $self->{data}->[_start3] = 0; $self->{data}->[_end3] = 0; $self->{data}->[_strand3] = ""; $self->{data}->[_position] = 0; $self->{data}->[_id] = 0; $self->{data}->[_tRNAscan_id] = ""; $self->{data}->[_gtrnadb_id] = ""; $self->{data}->[_extdb_id] = ""; $self->{data}->[_isotype] = ""; $self->{data}->[_anticodon] = ""; @{$self->{data}->[_ar_ac_pos]} = (); @{$self->{data}->[_ar_introns]} = (); $self->{data}->[_model] = ""; $self->{data}->[_clade] = ""; $self->{data}->[_score] = 0; $self->{data}->[_mat_score] = 0; $self->{data}->[_hmm_score] = 0; $self->{data}->[_ss_score] = 0; %{$self->{data}->[_h_domain_models]} = (); $self->{data}->[_seq] = ""; $self->{data}->[_mat_seq] = ""; $self->{data}->[_mat_ss] = ""; $self->{data}->[_ss] = ""; $self->{data}->[_sprinzl_align] = ""; $self->{data}->[_sprinzl_ss] = ""; $self->{data}->[_pseudo] = 0; $self->{data}->[_trunc] = ""; $self->{data}->[_category] = ""; $self->{data}->[_upstream] = ""; $self->{data}->[_downstream] = ""; $self->{data}->[_hit_source] = ""; $self->{data}->[_src_seqid] = 0; $self->{data}->[_src_seqlen] = 0; @{$self->{data}->[_ar_multi_models]} = (); @{$self->{data}->[_ar_pos_sprinzl_map]} = (); %{$self->{data}->[_h_sprinzl_pos_map]} = (); @{$self->{data}->[_ar_non_canonical]} = (); $self->{data}->[_note] = ""; } sub copy { my $self = shift; my $obj = shift; $self->{data}->[_seqname] = $obj->{data}->[_seqname]; $self->{data}->[_ordered_seqname] = $obj->{data}->[_ordered_seqname]; $self->{data}->[_start] = $obj->{data}->[_start]; $self->{data}->[_end] = $obj->{data}->[_end]; $self->{data}->[_strand] = $obj->{data}->[_strand]; $self->{data}->[_start2] = $obj->{data}->[_start2]; $self->{data}->[_end2] = $obj->{data}->[_end2]; $self->{data}->[_strand2] = $obj->{data}->[_strand2]; $self->{data}->[_start3] = $obj->{data}->[_start3]; $self->{data}->[_end3] = $obj->{data}->[_end3]; $self->{data}->[_strand3] = $obj->{data}->[_strand3]; $self->{data}->[_position] = $obj->{data}->[_position]; $self->{data}->[_id] = $obj->{data}->[_id]; $self->{data}->[_tRNAscan_id] = $obj->{data}->[_tRNAscan_id]; $self->{data}->[_gtrnadb_id] = $obj->{data}->[_gtrnadb_id]; $self->{data}->[_extdb_id] = $obj->{data}->[_extdb_id]; $self->{data}->[_isotype] = $obj->{data}->[_isotype]; $self->{data}->[_anticodon] = $obj->{data}->[_anticodon]; @{$self->{data}->[_ar_ac_pos]} = @{$obj->{data}->[_ar_ac_pos]}; @{$self->{data}->[_ar_introns]} = @{$obj->{data}->[_ar_introns]}; $self->{data}->[_model] = $obj->{data}->[_model]; $self->{data}->[_clade] = $obj->{data}->[_clade]; $self->{data}->[_score] = $obj->{data}->[_score]; $self->{data}->[_mat_score] = $obj->{data}->[_mat_score]; $self->{data}->[_hmm_score] = $obj->{data}->[_hmm_score]; $self->{data}->[_ss_score] = $obj->{data}->[_ss_score]; %{$self->{data}->[_h_domain_models]} = %{$obj->{data}->[_h_domain_models]}; $self->{data}->[_seq] = $obj->{data}->[_seq]; $self->{data}->[_mat_seq] = $obj->{data}->[_mat_seq]; $self->{data}->[_mat_ss] = $obj->{data}->[_mat_ss]; $self->{data}->[_ss] = $obj->{data}->[_ss]; $self->{data}->[_sprinzl_align] = $obj->{data}->[_sprinzl_align]; $self->{data}->[_sprinzl_ss] = $obj->{data}->[_sprinzl_ss]; $self->{data}->[_pseudo] = $obj->{data}->[_pseudo]; $self->{data}->[_trunc] = $obj->{data}->[_trunc]; $self->{data}->[_category] = $obj->{data}->[_category]; $self->{data}->[_upstream] = $obj->{data}->[_upstream]; $self->{data}->[_downstream] = $obj->{data}->[_downstream]; $self->{data}->[_hit_source] = $obj->{data}->[_hit_source]; $self->{data}->[_src_seqid] = $obj->{data}->[_src_seqid]; $self->{data}->[_src_seqlen] = $obj->{data}->[_src_seqlen]; @{$self->{data}->[_ar_multi_models]} = @{$obj->{data}->[_ar_multi_models]}; @{$self->{data}->[_ar_pos_sprinzl_map]} = @{$obj->{data}->[_ar_pos_sprinzl_map]}; %{$self->{data}->[_h_sprinzl_pos_map]} = %{$obj->{data}->[_h_sprinzl_pos_map]}; @{$self->{data}->[_ar_non_canonical]} = @{$obj->{data}->[_ar_non_canonical]}; $self->{data}->[_note] = $obj->{data}->[_note]; } sub set_covels_hit { my $self = shift; my ($covels_hit) = @_; $self->{data}->[_seqname] = $covels_hit->{hit_seqname}; $self->set_domain_model("cove", $covels_hit->{score}); if ($covels_hit->{tRNA_start} < $covels_hit->{tRNA_end}) { $self->{data}->[_strand] = "+"; $self->{data}->[_start] = $covels_hit->{tRNA_start}; $self->{data}->[_end] = $covels_hit->{tRNA_end}; } else { $self->{data}->[_strand] = "-"; $self->{data}->[_start] = $covels_hit->{tRNA_end}; $self->{data}->[_end] = $covels_hit->{tRNA_start}; } } sub set_cmsearch_hit { my $self = shift; my ($cmsearch_hit) = @_; $self->{data}->[_seqname] = $cmsearch_hit->{hit_seqname}; $self->set_domain_model("infernal", $cmsearch_hit->{score}); $self->{data}->[_strand] = $cmsearch_hit->{strand}; if ($cmsearch_hit->{strand} eq "+") { $self->{data}->[_start] = $cmsearch_hit->{tRNA_start}; $self->{data}->[_end] = $cmsearch_hit->{tRNA_end}; } else { $self->{data}->[_start] = $cmsearch_hit->{tRNA_end}; $self->{data}->[_end] = $cmsearch_hit->{tRNA_start}; } $self->{data}->[_seq] = $cmsearch_hit->{seq}; $self->{data}->[_ss] = $cmsearch_hit->{ss}; } sub seqname { my $self = shift; if (@_) { $self->{data}->[_seqname] = shift; } return $self->{data}->[_seqname]; } sub ordered_seqname { my $self = shift; if (@_) { $self->{data}->[_ordered_seqname] = shift; } return $self->{data}->[_ordered_seqname]; } sub start { my $self = shift; if (@_) { $self->{data}->[_start] = shift; } return $self->{data}->[_start]; } sub end { my $self = shift; if (@_) { $self->{data}->[_end] = shift; } return $self->{data}->[_end]; } sub strand { my $self = shift; if (@_) { $self->{data}->[_strand] = shift; } return $self->{data}->[_strand]; } sub exon_start { my $self = shift; my $exon = shift; my $start = 0; if (@_) { $start = shift; $self->{data}->[_start2] = $start if ($exon == 2); $self->{data}->[_start3] = $start if ($exon == 3); } if ($exon == 2) { return $self->{data}->[_start2]; } if ($exon == 3) { return $self->{data}->[_start3]; } } sub exon_end { my $self = shift; my $exon = shift; my $end = 0; if (@_) { $end = shift; $self->{data}->[_end2] = $end if ($exon == 2); $self->{data}->[_end3] = $end if ($exon == 3); } if ($exon == 2) { return $self->{data}->[_end2]; } if ($exon == 3) { return $self->{data}->[_end3]; } } sub exon_strand { my $self = shift; my $exon = shift; my $strand = ""; if (@_) { $strand = shift; $self->{data}->[_strand2] = $strand if ($exon == 2); $self->{data}->[_strand3] = $strand if ($exon == 3); } if ($exon == 2) { return $self->{data}->[_strand2]; } if ($exon == 3) { return $self->{data}->[_strand3]; } } sub position { my $self = shift; if (@_) { $self->{data}->[_position] = shift; } return $self->{data}->[_position]; } sub len { my $self = shift; my $len = 0; if ($self->{data}->[_start] < $self->{data}->[_end]) { $len = $self->{data}->[_end] - $self->{data}->[_start] + 1; } else { $len = $self->{data}->[_start] - $self->{data}->[_end] + 1; } return $len; } sub id { my $self = shift; if (@_) { $self->{data}->[_id] = shift; } return $self->{data}->[_id]; } sub tRNAscan_id { my $self = shift; if (@_) { $self->{data}->[_tRNAscan_id] = shift; } return $self->{data}->[_tRNAscan_id]; } sub gtrnadb_id { my $self = shift; if (@_) { $self->{data}->[_gtrnadb_id] = shift; } return $self->{data}->[_gtrnadb_id]; } sub extdb_id { my $self = shift; if (@_) { $self->{data}->[_extdb_id] = shift; } return $self->{data}->[_extdb_id]; } sub clade { my $self = shift; if (@_) { $self->{data}->[_clade] = shift; } return $self->{data}->[_clade]; } sub isotype { my $self = shift; if (@_) { $self->{data}->[_isotype] = shift; } return $self->{data}->[_isotype]; } sub is_type2 { my $self = shift; my $type2 = 0; if (defined TYPE2_TRNA->{$self->{data}->[_clade]}) { if (TYPE2_TRNA->{$self->{data}->[_clade]} =~ /$self->{data}->[_isotype]/) { $type2 = 1; } } return $type2; } sub anticodon { my $self = shift; if (@_) { $self->{data}->[_anticodon] = shift; } return $self->{data}->[_anticodon]; } sub ar_ac_pos { my $self = shift; if (@_) { @{ $self->{data}->[_ar_ac_pos] } = @_; } return @{ $self->{data}->[_ar_ac_pos] }; } sub add_ac_pos { my $self = shift; my ($rel_start, $rel_end) = @_; my $ac = {}; $ac->{rel_start} = $rel_start; $ac->{rel_end} = $rel_end; push(@{$self->{data}->[_ar_ac_pos]}, $ac); } sub get_ac_pos_count { my $self = shift; return (scalar(@{$self->{data}->[_ar_ac_pos]})); } sub remove_ac_pos { my $self = shift; my $index = shift; if ($index >= 0 and $index < $self->get_ac_pos_count()) { splice(@{$self->{data}->[_ar_ac_pos]}, $index, 1); } } sub ar_introns { my $self = shift; if (@_) { @{ $self->{data}->[_ar_introns] } = @_; } return @{ $self->{data}->[_ar_introns] }; } sub add_rel_intron { my $self = shift; my ($rel_start, $rel_end, $type, $seq) = @_; my ($start, $end); if ($self->{data}->[_strand] eq "+") { $start = $self->{data}->[_start] + $rel_start - 1; $end = $self->{data}->[_start] + $rel_end - 1; } else { $end = $self->{data}->[_end] - $rel_start + 1; $start = $self->{data}->[_end] - $rel_end + 1; } $self->add_intron($rel_start, $rel_end, $start, $end, $type, $seq); } sub add_intron { my $self = shift; my ($rel_start, $rel_end, $abs_start, $abs_end, $type, $seq) = @_; my $intron = {}; $intron->{rel_start} = $rel_start; $intron->{rel_end} = $rel_end; $intron->{start} = $abs_start; $intron->{end} = $abs_end; $intron->{type} = $type; $intron->{seq} = uc($seq); push(@{$self->{data}->[_ar_introns]}, $intron); } sub set_intron { my $self = shift; my ($index, $rel_start, $rel_end, $type, $seq) = @_; $self->{data}->[_ar_introns]->[$index]->{rel_start} = $rel_start; $self->{data}->[_ar_introns]->[$index]->{rel_end} = $rel_end; $self->{data}->[_ar_introns]->[$index]->{type} = $type; $self->{data}->[_ar_introns]->[$index]->{seq} = $seq; if ($self->{data}->[_strand] eq "+") { $self->{data}->[_ar_introns]->[$index]->{start} = $self->{data}->[_start] + $rel_start - 1; $self->{data}->[_ar_introns]->[$index]->{end} = $self->{data}->[_start] + $rel_end - 1; } else { $self->{data}->[_ar_introns]->[$index]->{end} = $self->{data}->[_end] - $rel_start + 1; $self->{data}->[_ar_introns]->[$index]->{start} = $self->{data}->[_end] - $rel_end + 1; } } sub get_intron { my $self = shift; my $index = shift; if ($index >= 0 and $index < get_intron_count()) { return $self->{data}->[_ar_introns]->[$index]; } else { return undef; } } sub remove_intron { my $self = shift; my $index = shift; if ($index >= 0 and $index < $self->get_intron_count()) { splice(@{$self->{data}->[_ar_introns]}, $index, 1); } } sub sort_introns { my $self = shift; @{$self->{data}->[_ar_introns]} = sort {$a->{rel_start} <=> $b->{rel_start}} @{$self->{data}->[_ar_introns]}; } sub merge_introns { my $self = shift; my $last_end = -1; $self->sort_introns(); for (my $ct = 0; $ct < $self->get_intron_count(); $ct++) { if ($last_end == $self->{data}->[_ar_introns]->[$ct]->{rel_start} - 1) { $last_end = $self->{data}->[_ar_introns]->[$ct]->{rel_end}; $self->{data}->[_ar_introns]->[$ct]->{rel_start} = $self->{data}->[_ar_introns]->[$ct - 1]->{rel_start}; if ($self->{data}->[_strand] eq "+") { $self->{data}->[_ar_introns]->[$ct]->{start} = $self->{data}->[_ar_introns]->[$ct - 1]->{start}; } else { $self->{data}->[_ar_introns]->[$ct]->{end} = $self->{data}->[_ar_introns]->[$ct - 1]->{end}; } if ($self->{data}->[_ar_introns]->[$ct - 1]->{type} eq "CI") { $self->{data}->[_ar_introns]->[$ct]->{type} = "CI"; } $self->{data}->[_ar_introns]->[$ct - 1] = undef; } $last_end = $self->{data}->[_ar_introns]->[$ct]->{rel_end}; } for (my $ct = ($self->get_intron_count() - 1); $ct >= 0; $ct--) { if (!defined $self->{data}->[_ar_introns]->[$ct]) { splice(@{$self->{data}->[_ar_introns]}, $ct, 1); } } } sub get_intron_count { my $self = shift; return (scalar(@{$self->{data}->[_ar_introns]})); } sub get_intron_seq { my $self = shift; my $index = shift; my $seq = ""; if ($index >= 0 and $index < $self->get_intron_count()) { my $intron = $self->{data}->[_ar_introns]->[$index]; $seq = uc(substr($self->{data}->[_seq], $intron->{rel_start} - 1, ($intron->{rel_end} - $intron->{rel_start} + 1))); } return $seq; } sub model { my $self = shift; if (@_) { $self->{data}->[_model] = shift; } return $self->{data}->[_model]; } sub score { my $self = shift; if (@_) { $self->{data}->[_score] = shift; } return $self->{data}->[_score]; } sub mat_score { my $self = shift; if (@_) { $self->{data}->[_mat_score] = shift; } return $self->{data}->[_mat_score]; } sub hmm_score { my $self = shift; if (@_) { $self->{data}->[_hmm_score] = shift; } return $self->{data}->[_hmm_score]; } sub ss_score { my $self = shift; if (@_) { $self->{data}->[_ss_score] = shift; } return $self->{data}->[_ss_score]; } sub h_domain_models { my $self = shift; if (@_) { %{ $self->{data}->[_h_domain_models] } = @_; } return %{ $self->{data}->[_h_domain_models] }; } sub set_domain_model { my $self = shift; my ($alg, $score) = @_; my $model_hit = {}; $model_hit->{score} = $score; $model_hit->{mat_score} = 0; $model_hit->{hmm_score} = 0; $model_hit->{ss_score} = 0; $self->{data}->[_h_domain_models]->{$alg} = $model_hit; } sub get_domain_model { my $self = shift; my ($alg) = @_; if (defined $self->{data}->[_h_domain_models]->{$alg}) { return $self->{data}->[_h_domain_models]->{$alg}; } else { return undef; } } sub update_domain_model { my $self = shift; my ($alg, $score, $mat_score, $hmm_score, $ss_score) = @_; if (defined $self->{data}->[_h_domain_models]->{$alg}) { $self->{data}->[_h_domain_models]->{$alg}->{score} = $score; $self->{data}->[_h_domain_models]->{$alg}->{mat_score} = $mat_score; $self->{data}->[_h_domain_models]->{$alg}->{hmm_score} = $hmm_score; $self->{data}->[_h_domain_models]->{$alg}->{ss_score} = $ss_score; } } sub set_default_scores { my $self = shift; if (defined $self->{data}->[_h_domain_models]->{cove}) { $self->{data}->[_score] = $self->{data}->[_h_domain_models]->{cove}->{score}; $self->{data}->[_mat_score] = $self->{data}->[_h_domain_models]->{cove}->{mat_score}; } else { $self->{data}->[_score] = $self->{data}->[_h_domain_models]->{infernal}->{score}; $self->{data}->[_mat_score] = $self->{data}->[_h_domain_models]->{infernal}->{mat_score}; } if (defined $self->{data}->[_h_domain_models]->{infernal}) { $self->{data}->[_hmm_score] = $self->{data}->[_h_domain_models]->{infernal}->{hmm_score}; $self->{data}->[_ss_score] = $self->{data}->[_h_domain_models]->{infernal}->{ss_score}; } else { $self->{data}->[_hmm_score] = $self->{data}->[_h_domain_models]->{cove}->{hmm_score}; $self->{data}->[_ss_score] = $self->{data}->[_h_domain_models]->{cove}->{ss_score}; } } sub get_default_score_type { my $self = shift; my $type = ""; if (defined $self->{data}->[_h_domain_models]->{cove}) { $type = "cove"; } elsif (defined $self->{data}->[_h_domain_models]->{infernal}) { $type = "infernal"; } return $type; } sub seq { my $self = shift; if (@_) { $self->{data}->[_seq] = shift; } return $self->{data}->[_seq]; } sub mat_seq { my $self = shift; if (@_) { $self->{data}->[_mat_seq] = shift; } return $self->{data}->[_mat_seq]; } sub set_mature_tRNA { my $self = shift; my $set_ss = 0; if ($self->{data}->[_mat_ss] eq "") { $set_ss = 1; } if ($self->{data}->[_mat_seq] eq "") { if ($self->get_intron_count() == 0) { $self->{data}->[_mat_seq] = $self->{data}->[_seq]; $self->{data}->[_mat_ss] = $self->{data}->[_ss]; } else { my @introns = @{$self->{data}->[_ar_introns]}; for (my $i = 0; $i < $self->get_intron_count(); $i++) { if ($i == 0) { $self->{data}->[_mat_seq] = substr($self->{data}->[_seq], 0, $introns[$i]->{rel_start} - 1); if ($set_ss) { $self->{data}->[_mat_ss] = substr($self->{data}->[_ss], 0, $introns[$i]->{rel_start} - 1); } } else { $self->{data}->[_mat_seq] .= substr($self->{data}->[_seq], $introns[$i-1]->{rel_end}, $introns[$i]->{rel_start} - $introns[$i-1]->{rel_end} - 1); if ($set_ss) { $self->{data}->[_mat_ss] .= substr($self->{data}->[_ss], $introns[$i-1]->{rel_end}, $introns[$i]->{rel_start} - $introns[$i-1]->{rel_end} - 1); } } } $self->{data}->[_mat_seq] .= substr($self->{data}->[_seq], $introns[$self->get_intron_count()-1]->{rel_end}); if ($set_ss) { $self->{data}->[_mat_ss] .= substr($self->{data}->[_ss], $introns[$self->get_intron_count()-1]->{rel_end}); } } } } sub mat_ss { my $self = shift; if (@_) { $self->{data}->[_mat_ss] = shift; } return $self->{data}->[_mat_ss]; } sub ss { my $self = shift; if (@_) { $self->{data}->[_ss] = shift; } return $self->{data}->[_ss]; } sub sprinzl_align { my $self = shift; if (@_) { $self->{data}->[_sprinzl_align] = shift; } return $self->{data}->[_sprinzl_align]; } sub sprinzl_ss { my $self = shift; if (@_) { $self->{data}->[_sprinzl_ss] = shift; } return $self->{data}->[_sprinzl_ss]; } sub pseudo { my $self = shift; if (@_) { $self->{data}->[_pseudo] = shift; } return $self->{data}->[_pseudo]; } sub is_pseudo { my $self = shift; if ($self->{data}->[_pseudo]) { return 1; } else { return 0; } } sub trunc { my $self = shift; if (@_) { $self->{data}->[_trunc] = shift; } return $self->{data}->[_trunc]; } sub is_trunc { my $self = shift; if ($self->{data}->[_trunc] ne "") { return 1; } else { return 0; } } sub category { my $self = shift; if (@_) { $self->{data}->[_category] = shift; } return $self->{data}->[_category]; } sub is_numt { my $self = shift; if ($self->{data}->[_category] eq "numt") { return 1; } else { return 0; } } sub is_mito { my $self = shift; if ($self->{data}->[_category] eq "mito") { return 1; } else { return 0; } } sub is_undetermined { my $self = shift; if ($self->{data}->[_category] eq "undetermined_ac") { return 1; } else { return 0; } } sub is_cytosolic { my $self = shift; if ($self->{data}->[_category] eq "cyto") { return 1; } else { return 0; } } sub is_organelle { my $self = shift; if ($self->{data}->[_category] eq "org") { return 1; } else { return 0; } } sub is_mito_iso_conflict { my $self = shift; if ($self->{data}->[_category] eq "mito_iso_conflict") { return 1; } else { return 0; } } sub is_mito_noncanonical_ac { my $self = shift; if ($self->{data}->[_category] eq "mito_noncanonical_ac") { return 1; } else { return 0; } } sub is_mito_ac_mislocation { my $self = shift; if ($self->{data}->[_category] eq "mito_ac_mislocation") { return 1; } else { return 0; } } sub is_mito_mismatch_ac { my $self = shift; if ($self->{data}->[_category] eq "mito_mismatch_ac") { return 1; } else { return 0; } } sub note { my $self = shift; if (@_) { $self->{data}->[_note] = shift; } return $self->{data}->[_note]; } sub upstream { my $self = shift; if (@_) { $self->{data}->[_upstream] = shift; } return $self->{data}->[_upstream]; } sub downstream { my $self = shift; if (@_) { $self->{data}->[_downstream] = shift; } return $self->{data}->[_downstream]; } sub hit_source { my $self = shift; if (@_) { $self->{data}->[_hit_source] = shift; } return $self->{data}->[_hit_source]; } sub src_seqid { my $self = shift; if (@_) { $self->{data}->[_src_seqid] = shift; } return $self->{data}->[_src_seqid]; } sub src_seqlen { my $self = shift; if (@_) { $self->{data}->[_src_seqlen] = shift; } return $self->{data}->[_src_seqlen]; } sub ar_multi_models { my $self = shift; if (@_) { @{ $self->{data}->[_ar_multi_models] } = @_; } return @{ $self->{data}->[_ar_multi_models] }; } sub add_model_hit { my $self = shift; my ($type, $model, $score, $ss) = @_; my $model_hit = {}; $model_hit->{type} = $type; $model_hit->{model} = $model; $model_hit->{score} = $score; $model_hit->{ss} = $ss; push(@{$self->{data}->[_ar_multi_models]}, $model_hit); } sub sort_multi_models { my $self = shift; my $key = shift; if ($key eq "model") { @{$self->{data}->[_ar_multi_models]} = sort {$a->{type} cmp $b->{type} || $a->{model} cmp $b->{model}} @{$self->{data}->[_ar_multi_models]}; } elsif ($key eq "score") { @{$self->{data}->[_ar_multi_models]} = sort {$b->{score} <=> $a->{score}} @{$self->{data}->[_ar_multi_models]}; } } sub get_model_hit { # assume pre-sort my $self = shift; my ($type, $search_name) = @_; my $model = ""; my $score = 0; my $ss = ""; my $index = $self->bsearch_model_hit($type, $search_name); if ($index > -1) { $model = $self->{data}->[_ar_multi_models]->[$index]->{model}; $score = $self->{data}->[_ar_multi_models]->[$index]->{score}; $ss = $self->{data}->[_ar_multi_models]->[$index]->{ss}; } return ($model, $score, $ss); } sub get_highest_score_model { my $self = shift; my $type = "None"; my $model = "None"; my $score = 0; my $ss = ""; if (scalar(@{$self->{data}->[_ar_multi_models]}) > 0) { $self->sort_multi_models("score"); $type = $self->{data}->[_ar_multi_models]->[0]->{type}; $model = $self->{data}->[_ar_multi_models]->[0]->{model}; $score = $self->{data}->[_ar_multi_models]->[0]->{score}; $ss = $self->{data}->[_ar_multi_models]->[0]->{ss}; } return ($type, $model, $score, $ss); } sub bsearch_model_hit { my $self = shift; my ($x, $y) = @_; my ($l, $u) = (0, @{$self->{data}->[_ar_multi_models]} - 1); my $i; while ($l <= $u) { $i = int(($l + $u)/2); if ($self->{data}->[_ar_multi_models]->[$i]->{type} lt $x) { $l = $i+1; } elsif ($self->{data}->[_ar_multi_models]->[$i]->{type} gt $x) { $u = $i-1; } else { if ($self->{data}->[_ar_multi_models]->[$i]->{model} lt $y) { $l = $i+1; } elsif ($self->{data}->[_ar_multi_models]->[$i]->{model} gt $y) { $u = $i-1; } else { return $i; } } } return -1; } sub ar_pos_sprinzl_map { my $self = shift; return @{ $self->{data}->[_ar_pos_sprinzl_map] }; } sub h_sprinzl_pos_map { my $self = shift; return %{ $self->{data}->[_h_sprinzl_pos_map] }; } sub map_sprinzl_pos { my $self = shift; my $ar_sprinzl_pos = shift; $self->{data}->[_ar_pos_sprinzl_map] = []; $self->{data}->[_h_sprinzl_pos_map] = {}; my @bases = split(//, $self->{data}->[_sprinzl_align]); my $pos_count = 0; my $ins_count = 0; for (my $i = 0; $i < scalar(@bases); $i++) { if ($bases[$i] =~ /^[ACGT-]$/) { push(@{$self->{data}->[_ar_pos_sprinzl_map]}, $ar_sprinzl_pos->[$pos_count]); $self->{data}->[_h_sprinzl_pos_map]->{$ar_sprinzl_pos->[$pos_count]} = $i; $pos_count++; $ins_count = 0; } else { $ins_count++; push(@{$self->{data}->[_ar_pos_sprinzl_map]}, $ar_sprinzl_pos->[$pos_count-1].":i".$ins_count); $self->{data}->[_h_sprinzl_pos_map]->{$ar_sprinzl_pos->[$pos_count-1].":i".$ins_count} = $i; } } } sub get_sprinzl_pos { my $self = shift; my $rel_pos = shift; my $pos = ""; if ($rel_pos >= 0 and $rel_pos < scalar(@{$self->{data}->[_ar_pos_sprinzl_map]})) { $pos = $self->{data}->[_ar_pos_sprinzl_map]->[$rel_pos]; } return $pos; } sub get_rel_align_pos { my $self = shift; my $sprinzl_pos = shift; my $rel_pos = -1; if (defined $self->{data}->[_h_sprinzl_pos_map]->{$sprinzl_pos}) { $rel_pos = $self->{data}->[_h_sprinzl_pos_map]->{$sprinzl_pos}; } return $rel_pos; } sub get_base_at_sprinzl { my $self = shift; my $sprinzl_pos = shift; my $rel_pos = $self->get_rel_align_pos($sprinzl_pos); return ($self->get_base_at_rel_align_pos($rel_pos)); } sub get_base_at_rel_align_pos { my $self = shift; my $rel_pos = shift; my $base = ""; if ($rel_pos != -1) { $base = substr($self->{data}->[_sprinzl_align], $rel_pos, 1); } return $base; } sub get_rel_pos { my $self = shift; my $coord = shift; my $rel_pos = -1; if ($coord >= $self->{data}->[_start] && $coord <= $self->{data}->[_end]) { if ($self->{data}->[_strand] eq "+") { $rel_pos = $coord - $self->{data}->[_start] + 1; } else { $rel_pos = $self->{data}->[_end] - $coord + 1; } } return $rel_pos; } sub get_rel_mature_pos { my $self = shift; my $coord = shift; my $rel_pos = $self->get_rel_pos($coord); my $rel_mature_pos = $rel_pos; for (my $i = ($self->get_intron_count() - 1); $i >= 0; $i--) { my $intron = $self->{data}->[_ar_introns]->[$i]; if ($rel_pos > $intron->{rel_end}) { $rel_mature_pos = $rel_mature_pos - ($intron->{rel_end} - $intron->{rel_start} + 1); } } return $rel_mature_pos; } sub is_intronic { my $self = shift; my $coord = shift; my $intronic = 0; my $rel_pos = $self->get_rel_pos($coord); if ($rel_pos != -1) { for (my $i = 0; $i < $self->get_intron_count(); $i++) { my $intron = $self->{data}->[_ar_introns]->[$i]; if ($rel_pos >= $intron->{rel_start} && $rel_pos <= $intron->{rel_end}) { $intronic = 1; } } } return $intronic; } sub convert_sprinzl_pos { my $self = shift; my $coord = shift; my $sprinzl_pos = ""; if (!$self->is_intronic($coord)) { my $rel_mature_pos = $self->get_rel_mature_pos($coord); my @bases = split(//, $self->{data}->[_sprinzl_align]); my $ct = 0; for (my $i = 0; $i < scalar(@bases); $i++) { if ($bases[$i] ne "-") { $ct++; if ($ct == $rel_mature_pos) { $sprinzl_pos = $self->get_sprinzl_pos($i); $i = scalar(@bases); } } } } return $sprinzl_pos; } sub get_seq_fragment { my $self = shift; my ($rel_start, $rel_end) = @_; my $seq = ""; if ($rel_start > 0 and $rel_end <= &len($self)) { $seq = substr($self->{data}->[_seq], $rel_start - 1, $rel_end - $rel_start + 1); } return $seq; } sub ar_non_canonical { my $self = shift; return @{ $self->{data}->[_ar_non_canonical] }; } sub add_non_canonical { my $self = shift; my $rel_pos = shift; my $nc = shift; $self->{data}->[_ar_non_canonical]->[$rel_pos] = $nc; } sub get_non_canonical { my $self = shift; my $sprinzl_pos = shift; my $nc = ""; my $rel_pos = $self->get_rel_align_pos($sprinzl_pos); if ($rel_pos != -1) { $nc = $self->{data}->[_ar_non_canonical]->[$rel_pos]; } return $nc; } sub get_mismatch_count { my $self = shift; my $count = 0; for (my $i = 0; $i < scalar(@{$self->{data}->[_ar_non_canonical]}); $i++) { if ($self->{data}->[_ar_non_canonical]->[$i] eq "M") { $count++; } } return (int($count / 2)); } sub get_noncanonical_count { my $self = shift; my $count = 0; for (my $i = 0; $i < scalar(@{$self->{data}->[_ar_non_canonical]}); $i++) { if ($self->{data}->[_ar_non_canonical]->[$i] eq "N") { $count++; } } return (int($count / 2)); } sub is_mismatch { my $self = shift; my $rel_pos = shift; my $mismatch = 0; if ($self->{data}->[_ar_non_canonical]->[$rel_pos] eq "M") { $mismatch = 1; } return $mismatch; } sub is_insertion { my $self = shift; my $rel_pos = shift; my $insert = 0; if ($self->{data}->[_ar_non_canonical]->[$rel_pos] eq "I") { $insert = 1; } return $insert; } sub is_deletion { my $self = shift; my $rel_pos = shift; my $delete = 0; if ($self->{data}->[_ar_non_canonical]->[$rel_pos] eq "D") { $delete = 1; } return $delete; } sub is_non_canonical { my $self = shift; my $rel_pos = shift; my $nc = 0; if ($self->{data}->[_ar_non_canonical]->[$rel_pos] eq "N") { $nc = 1; } return $nc; } sub get_annotated_mismatches { my $self = shift; my $h_sprinzl_pairs = shift; my $value = ""; for (my $i = 0; $i < scalar(@{$self->{data}->[_ar_non_canonical]}); $i++) { if ($self->{data}->[_ar_non_canonical]->[$i] eq "M") { if (defined $h_sprinzl_pairs->{$self->get_sprinzl_pos($i)}) { my $pos2 = $h_sprinzl_pairs->{$self->get_sprinzl_pos($i)}; my $base2 = $self->get_base_at_sprinzl($pos2); if ($value ne "") { $value .= " "; } $value .= $self->get_base_at_rel_align_pos($i).$self->get_sprinzl_pos($i).":".$base2.$pos2; } } } return $value; } sub get_annotated_noncanonical { my $self = shift; my $value = ""; for (my $i = 0; $i < scalar(@{$self->{data}->[_ar_non_canonical]}); $i++) { if ($self->{data}->[_ar_non_canonical]->[$i] eq "N") { if ($value ne "") { $value .= " "; } $value .= $self->get_base_at_rel_align_pos($i).$self->get_sprinzl_pos($i); } } return $value; } sub check_stem_mismatches { my $self = shift; my $h_sprinzl_pairs = shift; my @bases = split(//, $self->{data}->[_sprinzl_align]); for (my $i = 0; $i < scalar(@bases); $i++) { if (index($self->{data}->[_ar_pos_sprinzl_map]->[$i], ":i") == -1) { if (defined $h_sprinzl_pairs->{$self->{data}->[_ar_pos_sprinzl_map]->[$i]} && $self->{data}->[_ar_pos_sprinzl_map]->[$i] ne '13' && index($self->{data}->[_ar_pos_sprinzl_map]->[$i], "e") == -1) { my $b1 = $bases[$i]; my $pos2 = $self->get_rel_align_pos($h_sprinzl_pairs->{$self->{data}->[_ar_pos_sprinzl_map]->[$i]}); my $b2 = $bases[$pos2]; if ($b1 eq "A" && $b2 eq "T") {} elsif ($b1 eq "T" && $b2 eq "A") {} elsif ($b1 eq "T" && $b2 eq "G") {} elsif ($b1 eq "G" && $b2 eq "C") {} elsif ($b1 eq "G" && $b2 eq "T") {} elsif ($b1 eq "C" && $b2 eq "G") {} elsif ($b1 eq "-" || $b2 eq "-") {} else { $self->{data}->[_ar_non_canonical]->[$i] = "M"; $self->{data}->[_ar_non_canonical]->[$pos2] = "M"; } } } } } sub is_WC_base_pair { my $self = shift; my $b1 = shift; my $b2 = shift; my $wc = 1; if ($b1 eq "A" && $b2 eq "T") {} elsif ($b1 eq "A" && $b2 eq "U") {} elsif ($b1 eq "T" && $b2 eq "A") {} elsif ($b1 eq "U" && $b2 eq "A") {} elsif ($b1 eq "G" && $b2 eq "C") {} elsif ($b1 eq "C" && $b2 eq "G") {} elsif ($b1 eq "-" || $b2 eq "-") {} else { $wc = 0; } return $wc; } sub is_GU_base_pair { my $self = shift; my $b1 = shift; my $b2 = shift; my $gu = 1; if ($b1 eq "G" && $b2 eq "T") {} elsif ($b1 eq "G" && $b2 eq "U") {} elsif ($b1 eq "T" && $b2 eq "G") {} elsif ($b1 eq "U" && $b2 eq "G") {} else { $gu = 0; } return $gu; } 1; tRNAscan-SE-2.0/lib/tRNAscanSE/SS.pm0000644000543100007160000001420113053260555016166 0ustar pchanlowelab# tRNAscanSE/SS.pm # This class contains parameters and functions for secondary structure parsing used in tRNAscan-SE. # # -------------------------------------------------------------- # This module is part of the tRNAscan-SE program. # Copyright (C) 2017 Patricia P. Chan & Todd M. Lowe # -------------------------------------------------------------- # package tRNAscanSE::SS; use strict; use tRNAscanSE::Utils; require Exporter; our @ISA = qw(Exporter); our @EXPORT = qw(valid_structure get_acceptor_half); sub valid_structure { my ($ss, $canonical_intron_len) = @_; my $stem_index = 0; my %valid = (); $valid{tRNA} = 1; $valid{acceptor} = 1; $valid{darm} = 1; $valid{anticodon} = 1; $valid{variable} = 1; $valid{tstem} = 1; my $total_mismatches = 0; my ($r_stems, $r_mismatches) = &get_stems($ss); for ($stem_index = 0; $stem_index < scalar(@$r_mismatches); $stem_index++) { $total_mismatches += $r_mismatches->[$stem_index]; } if (($total_mismatches > 1) || (scalar(@$r_stems) < 4) || (scalar(@$r_stems) > 5)) { $valid{tRNA} = 0; } if (scalar(@$r_stems) == 5) { $valid{acceptor} = 0 if (($r_mismatches->[0] > 1) || (&get_stem_length($r_stems->[0]) != 7)); $valid{darm} = 0 if (($r_mismatches->[1] > 1) || (&get_stem_length($r_stems->[1]) < 3)); $valid{anticodon} = 0 if (($r_mismatches->[2] > 1) || (&get_stem_length($r_stems->[2]) != 5)); $valid{variable} = 0 if (($r_mismatches->[3] > 1) || (&get_stem_length($r_stems->[3]) < 2)); $valid{tstem} = 0 if (($r_mismatches->[4] > 1) || (&get_stem_length($r_stems->[4]) != 5)); $valid{tRNA} = $valid{acceptor} && $valid{darm} && $valid{anticodon} && $valid{variable} && $valid{tstem} && (length($ss) - $canonical_intron_len <= 90); } elsif (scalar(@$r_stems) == 4) { $valid{variable} = 0; $valid{acceptor} = 0 if (($r_mismatches->[0] > 1) || (&get_stem_length($r_stems->[0]) != 7)); $valid{darm} = 0 if (($r_mismatches->[1] > 1) || (&get_stem_length($r_stems->[1]) < 3)); $valid{anticodon} = 0 if (($r_mismatches->[2] > 1) || (&get_stem_length($r_stems->[2]) != 5)); $valid{tstem} = 0 if (($r_mismatches->[3] > 1) || (&get_stem_length($r_stems->[3]) != 5)); $valid{tRNA} = $valid{acceptor} && $valid{darm} && $valid{anticodon} && $valid{tstem} && (length($ss) - $canonical_intron_len <= 80); } elsif (scalar(@$r_stems) == 3) { $valid{variable} = 0; $valid{acceptor} = 0 if (($r_mismatches->[0] > 1) || (&get_stem_length($r_stems->[0]) != 7)); if ($r_mismatches->[1] == 0) { $valid{darm} = 0 if (($r_mismatches->[1] > 1) || (&get_stem_length($r_stems->[1]) < 3)); $valid{anticodon} = 0 if (($r_mismatches->[2] > 1) || (&get_stem_length($r_stems->[2]) != 5)); $valid{tstem} = 0; } elsif ($r_mismatches->[2] == 0) { $valid{darm} = 0; $valid{anticodon} = 0 if (($r_mismatches->[1] > 1) || (&get_stem_length($r_stems->[1]) != 5)); $valid{tstem} = 0 if (($r_mismatches->[2] > 1) || (&get_stem_length($r_stems->[2]) != 5)); } else { $valid{acceptor} = 0; $valid{darm} = 0; $valid{anticodon} = 0; $valid{variable} = 0; $valid{tstem} = 0; } } else { $valid{acceptor} = 0; $valid{darm} = 0; $valid{anticodon} = 0; $valid{variable} = 0; $valid{tstem} = 0; } return \%valid; } sub get_stem_length { my ($r_stem) = @_; return ($r_stem->{end_left} - $r_stem->{start_left} + 1); } sub get_stems { my ($ss) = @_; my %pairs = (); my @left = (); my @right = (); my @stems = (); my @mismatches = (); my $left_index = -1; my $right_index = -1; my $last_right_index = -1; my $start_left_index = -1; my $end_left_index = -1; my $start_right_index = -1; my $end_right_index = -1; for (my $pos = 0; $pos < length($ss); $pos++) { if (substr($ss, $pos, 1) eq ">") { push(@left, $pos); $pairs{$#left} = -1; } elsif (substr($ss, $pos, 1) eq "<") { push(@right, $pos); $left_index = scalar(@left) - 1; while (($pairs{$left_index} > -1) && ($left_index > -1)) { $left_index--; } if (($left_index > -1) && ($pairs{$left_index} == -1)) { $pairs{$left_index} = scalar(@right) - 1; } } } foreach $left_index (sort { $a <=> $b } keys %pairs) { if ($last_right_index == -1) { $start_left_index = $left_index; $end_right_index = $pairs{$left_index}; } elsif ($pairs{$left_index} != ($last_right_index - 1)) { $end_left_index = $left_index - 1; $start_right_index = $last_right_index; push(@stems, {start_left=>$left[$start_left_index], end_left=>$left[$end_left_index], start_right=>$right[$start_right_index], end_right=>$right[$end_right_index]}); $start_left_index = $left_index; $end_right_index = $pairs{$left_index}; } $last_right_index = $pairs{$left_index}; } if ($last_right_index > -1) { $end_left_index = $left_index - 1; $start_right_index = $last_right_index; push(@stems, {start_left=>$left[$start_left_index], end_left=>$left[$end_left_index], start_right=>$right[$start_right_index], end_right=>$right[$end_right_index]}); } # find mismatches in stems for (my $ct = 0; $ct < scalar(@stems); $ct++) { $mismatches[$ct] = 0; $left_index = $stems[$ct]->{end_left}; $right_index = $stems[$ct]->{start_right}; while ($left_index >= $stems[$ct]->{start_left} && $right_index <= $stems[$ct]->{end_right}) { if (substr($ss, $left_index, 1) eq ".") { if (substr($ss, $right_index, 1) eq ".") { $mismatches[$ct] += 1; $right_index++; } $left_index--; } elsif (substr($ss, $right_index, 1) eq ".") { $right_index++; } else { $left_index--; $right_index++; } } } return (\@stems, \@mismatches); } sub get_acceptor_half { my ($seq, $ss, $half) = @_; if ($half eq "5h") { return substr($seq, 0, 7); } elsif ($half eq "3h") { if (substr($ss, length($ss) - 12) eq "<...........") { return substr($seq, length($seq) - 11, 7); } else { return substr($seq, length($seq) - 8, 7); } } else { return ""; } } 1; tRNAscan-SE-2.0/lib/gcode/0000755000543100007160000000000013167504620014465 5ustar pchanlowelabtRNAscan-SE-2.0/lib/gcode/gcode.invmito0000644000543100007160000000022211021467310017140 0ustar pchanlowelab# Invertebrate mitochondrial translation codes # Format: <3-letter AA abreviation> TGA Trp W ATA Met M AGR Ser S tRNAscan-SE-2.0/lib/gcode/gcode.ystmito0000644000543100007160000000021311021467310017163 0ustar pchanlowelab# Yeast mitochondrial translation codes # Format: <3-letter AA abreviation> TGA Trp W ATA Met M CTN Thr T tRNAscan-SE-2.0/lib/gcode/gcode.cilnuc0000644000543100007160000000021711021467307016742 0ustar pchanlowelab# Ciliate, Dasycladacean, & Hexamita Nuclear translation codes # Format: <3-letter AA abreviation> TAR Gln Q tRNAscan-SE-2.0/lib/gcode/gcode.vertmito0000644000543100007160000000022011021467310017322 0ustar pchanlowelab# Vertebrate mitochondrial translation codes # Format: <3-letter AA abreviation> TGA Trp W ATA Met M AGR Stp * tRNAscan-SE-2.0/lib/gcode/gcode.echdmito0000644000543100007160000000021711021467307017261 0ustar pchanlowelab# Echinoderm mitochondrial translation codes # Format: <3-letter AA abreviation> TGA Trp W AGR Ser S AAA Asn N tRNAscan-SE-2.0/lib/gcode/gcode.othmito0000644000543100007160000000022011021467310017134 0ustar pchanlowelab# Mold, Protozoan, & Coelenterate mitochondrial translation codes # Format: <3-letter AA abreviation> TGA Trp W tRNAscan-SE-2.0/src/0000755000543100007160000000000013167521213013422 5ustar pchanlowelabtRNAscan-SE-2.0/src/types.c0000644000543100007160000000443511021467306014737 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* file: types.c * * Finicky type checkers for strings. Return 1 (TRUE) if ok, 0 elsewise. * */ #include #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: IsInt() * * Returns TRUE if s points to something that atoi() will parse * completely and convert to an integer. */ int IsInt(char *s) { int hex = 0; if (s == NULL) {squid_errno = SQERR_PARAMETER; return 0; } /* skip whitespace */ while (isspace(*s)) s++; /* skip leading sign */ if (*s == '-' || *s == '+') s++; /* skip leading conversion signals */ if ((strncmp(s, "0x", 2) == 0 && (int) strlen(s) > 2) || (strncmp(s, "0X", 2) == 0 && (int) strlen(s) > 2)) { s += 2; hex = 1; } else if (*s == '0' && (int) strlen(s) > 1) s++; /* examine remainder for garbage chars */ if (!hex) while (*s != '\0') { if (!isdigit(*s)) return 0; s++; } else while (*s != '\0') { if (!isxdigit(*s)) return 0; s++; } return 1; } /* Function: IsReal() * * Purpose: Returns TRUE if s is a string representation * of a valid floating point number. */ int IsReal(char *s) { int gotdecimal = 0; int gotexp = 0; int gotreal = 0; if (s == NULL) return 0; while (isspace(*s)) s++; /* skip leading whitespace */ if (*s == '-' || *s == '+') s++; /* skip leading sign */ /* Examine remainder for garbage. Allowed one '.' and * one 'e' or 'E'; if both '.' and e/E occur, '.' * must be first. */ while (*s != '\0') { if (isdigit(*s)) gotreal++; else if (*s == '.') { if (gotdecimal) return 0; /* can't have two */ if (gotexp) return 0; /* e/E preceded . */ else gotdecimal++; } else if (*s == 'e' || *s == 'E') { if (gotexp) return 0; /* can't have two */ else gotexp++; } else if (isspace(*s)) break; s++; } while (isspace(*s)) s++; /* skip trailing whitespace */ if (*s == '\0' && gotreal) return 1; else return 0; } tRNAscan-SE-2.0/src/revcomp.c0000644000543100007160000000221311021467305015235 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* revcomp.c * * Reverse complement of a IUPAC character string * */ #include #include #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif char * revcomp(char *comp, char *seq) { long bases; char *bckp, *fwdp; int idx; long pos; int c; if (comp == NULL) return NULL; if (seq == NULL) return NULL; bases = strlen(seq); fwdp = comp; bckp = seq + bases -1; for (pos = 0; pos < bases; pos++) { c = *bckp; c = sre_toupper(c); for (idx = 0; c != iupac[idx].sym && idx < IUPACSYMNUM; idx++); if (idx == IUPACSYMNUM) { Warn("Can't reverse complement an %c, pal. Using N.", c); *fwdp = 'N'; } else *fwdp = iupac[idx].symcomp; if (islower((int) *bckp)) *fwdp = sre_tolower((int) *fwdp); fwdp++; bckp--; } *fwdp = '\0'; return comp; } tRNAscan-SE-2.0/src/gnuregex.c0000644000543100007160000047307413073023655015434 0ustar pchanlowelab#ifndef lint /* SRE: lint *hates* this code! */ /* This is the GNU regular expression library. * I've modified it for portability and clarity (!). * "SRE" comments flag the changes I've made. * Thanks to the GNU folks for providing this code! * SRE, Sun Jan 7 09:48:26 1996 */ /* Extended regular expression matching and search library, version 0.12. (Implements POSIX draft P10003.2/D11.2, except for internationalization features.) Copyright (C) 1993 Free Software Foundation, Inc. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. */ /* AIX requires this to be the first thing in the file. */ #if defined (_AIX) && !defined (REGEX_MALLOC) #pragma alloca #endif #define _GNU_SOURCE /* We need this for `regex.h', and perhaps for the Emacs include files. */ #include #ifdef HAVE_CONFIG_H #include "config.h" #endif /* SRE: removed ifdef emacs; removed if HAVE_STRING_H; removed STDC_HEADERS */ #include #include #ifndef bcmp #define bcmp(s1, s2, n) memcmp ((s1), (s2), (n)) #endif #ifndef bcopy #define bcopy(s, d, n) memcpy ((d), (s), (n)) #endif #ifndef bzero #define bzero(s, n) memset ((s), 0, (n)) #endif /* Define the syntax stuff for \<, \>, etc. */ /* This must be nonzero for the wordchar and notwordchar pattern commands in re_match_2. */ #ifndef Sword #define Sword 1 #endif #ifdef SYNTAX_TABLE extern char *re_syntax_table; #else /* not SYNTAX_TABLE */ /* How many characters in the character set. */ #define CHAR_SET_SIZE 256 static char re_syntax_table[CHAR_SET_SIZE]; static void init_syntax_once () { register int c; static int done = 0; if (done) return; bzero (re_syntax_table, sizeof re_syntax_table); for (c = 'a'; c <= 'z'; c++) re_syntax_table[c] = Sword; for (c = 'A'; c <= 'Z'; c++) re_syntax_table[c] = Sword; for (c = '0'; c <= '9'; c++) re_syntax_table[c] = Sword; re_syntax_table['_'] = Sword; done = 1; } #endif /* not SYNTAX_TABLE */ #define SYNTAX(c) re_syntax_table[c] /* Get the interface, including the syntax bits. */ #include "gnuregex.h" /* isalpha etc. are used for the character classes. */ #include #ifndef isascii #define isascii(c) 1 #endif #ifdef isblank #define ISBLANK(c) (isascii (c) && isblank (c)) #else #define ISBLANK(c) ((c) == ' ' || (c) == '\t') #endif #ifdef isgraph #define ISGRAPH(c) (isascii (c) && isgraph (c)) #else #define ISGRAPH(c) (isascii (c) && isprint (c) && !isspace (c)) #endif #define ISPRINT(c) (isascii (c) && isprint (c)) #define ISDIGIT(c) (isascii (c) && isdigit (c)) #define ISALNUM(c) (isascii (c) && isalnum (c)) #define ISALPHA(c) (isascii (c) && isalpha (c)) #define ISCNTRL(c) (isascii (c) && iscntrl (c)) #define ISLOWER(c) (isascii (c) && islower (c)) #define ISPUNCT(c) (isascii (c) && ispunct (c)) #define ISSPACE(c) (isascii (c) && isspace (c)) #define ISUPPER(c) (isascii (c) && isupper (c)) #define ISXDIGIT(c) (isascii (c) && isxdigit (c)) #ifndef NULL #define NULL 0 #endif /* We remove any previous definition of `SIGN_EXTEND_CHAR', since ours (we hope) works properly with all combinations of machines, compilers, `char' and `unsigned char' argument types. (Per Bothner suggested the basic approach.) */ #undef SIGN_EXTEND_CHAR #if __STDC__ #define SIGN_EXTEND_CHAR(c) ((signed char) (c)) #else /* not __STDC__ */ /* As in Harbison and Steele. */ #define SIGN_EXTEND_CHAR(c) ((((unsigned char) (c)) ^ 128) - 128) #endif /* Should we use malloc or alloca? If REGEX_MALLOC is not defined, we use `alloca' instead of `malloc'. This is because using malloc in re_search* or re_match* could cause memory leaks when C-g is used in Emacs; also, malloc is slower and causes storage fragmentation. On the other hand, malloc is more portable, and easier to debug. Because we sometimes use alloca, some routines have to be macros, not functions -- `alloca'-allocated space disappears at the end of the function it is called in. */ #define REGEX_MALLOC /* SRE -- alloca not portable? */ #ifdef REGEX_MALLOC #define REGEX_ALLOCATE malloc #define REGEX_REALLOCATE(source, osize, nsize) realloc (source, nsize) #else /* not REGEX_MALLOC */ /* Emacs already defines alloca, sometimes. */ #ifndef alloca /* Make alloca work the best possible way. */ #ifdef __GNUC__ #define alloca __builtin_alloca #else /* not __GNUC__ */ #if HAVE_ALLOCA_H #include #else /* not __GNUC__ or HAVE_ALLOCA_H */ #ifndef _AIX /* Already did AIX, up at the top. */ char *alloca (); #endif /* not _AIX */ #endif /* not HAVE_ALLOCA_H */ #endif /* not __GNUC__ */ #endif /* not alloca */ #define REGEX_ALLOCATE alloca /* Assumes a `char *destination' variable. */ #define REGEX_REALLOCATE(source, osize, nsize) \ (destination = (char *) alloca (nsize), \ bcopy (source, destination, osize), \ destination) #endif /* not REGEX_MALLOC */ /* True if `size1' is non-NULL and PTR is pointing anywhere inside `string1' or just past its end. This works if PTR is NULL, which is a good thing. */ #define FIRST_STRING_P(ptr) \ (size1 && string1 <= (ptr) && (ptr) <= string1 + size1) /* (Re)Allocate N items of type T using malloc, or fail. */ #define TALLOC(n, t) ((t *) malloc ((n) * sizeof (t))) #define RETALLOC(addr, n, t) ((addr) = (t *) realloc (addr, (n) * sizeof (t))) #define REGEX_TALLOC(n, t) ((t *) REGEX_ALLOCATE ((n) * sizeof (t))) #define BYTEWIDTH 8 /* In bits. */ #define STREQ(s1, s2) ((strcmp (s1, s2) == 0)) #define MAX(a, b) ((a) > (b) ? (a) : (b)) #define MIN(a, b) ((a) < (b) ? (a) : (b)) typedef char boolean; #define false 0 #define true 1 /* These are the command codes that appear in compiled regular expressions. Some opcodes are followed by argument bytes. A command code can specify any interpretation whatsoever for its arguments. Zero bytes may appear in the compiled regular expression. The value of `exactn' is needed in search.c (search_buffer) in Emacs. So regex.h defines a symbol `RE_EXACTN_VALUE' to be 1; the value of `exactn' we use here must also be 1. */ typedef enum { no_op = 0, /* Followed by one byte giving n, then by n literal bytes. */ exactn = 1, /* Matches any (more or less) character. */ anychar, /* Matches any one char belonging to specified set. First following byte is number of bitmap bytes. Then come bytes for a bitmap saying which chars are in. Bits in each byte are ordered low-bit-first. A character is in the set if its bit is 1. A character too large to have a bit in the map is automatically not in the set. */ charset, /* Same parameters as charset, but match any character that is not one of those specified. */ charset_not, /* Start remembering the text that is matched, for storing in a register. Followed by one byte with the register number, in the range 0 to one less than the pattern buffer's re_nsub field. Then followed by one byte with the number of groups inner to this one. (This last has to be part of the start_memory only because we need it in the on_failure_jump of re_match_2.) */ start_memory, /* Stop remembering the text that is matched and store it in a memory register. Followed by one byte with the register number, in the range 0 to one less than `re_nsub' in the pattern buffer, and one byte with the number of inner groups, just like `start_memory'. (We need the number of inner groups here because we don't have any easy way of finding the corresponding start_memory when we're at a stop_memory.) */ stop_memory, /* Match a duplicate of something remembered. Followed by one byte containing the register number. */ duplicate, /* Fail unless at beginning of line. */ begline, /* Fail unless at end of line. */ endline, /* Succeeds if at beginning of buffer (if emacs) or at beginning of string to be matched (if not). */ begbuf, /* Analogously, for end of buffer/string. */ endbuf, /* Followed by two byte relative address to which to jump. */ jump, /* Same as jump, but marks the end of an alternative. */ jump_past_alt, /* Followed by two-byte relative address of place to resume at in case of failure. */ on_failure_jump, /* Like on_failure_jump, but pushes a placeholder instead of the current string position when executed. */ on_failure_keep_string_jump, /* Throw away latest failure point and then jump to following two-byte relative address. */ pop_failure_jump, /* Change to pop_failure_jump if know won't have to backtrack to match; otherwise change to jump. This is used to jump back to the beginning of a repeat. If what follows this jump clearly won't match what the repeat does, such that we can be sure that there is no use backtracking out of repetitions already matched, then we change it to a pop_failure_jump. Followed by two-byte address. */ maybe_pop_jump, /* Jump to following two-byte address, and push a dummy failure point. This failure point will be thrown away if an attempt is made to use it for a failure. A `+' construct makes this before the first repeat. Also used as an intermediary kind of jump when compiling an alternative. */ dummy_failure_jump, /* Push a dummy failure point and continue. Used at the end of alternatives. */ push_dummy_failure, /* Followed by two-byte relative address and two-byte number n. After matching N times, jump to the address upon failure. */ succeed_n, /* Followed by two-byte relative address, and two-byte number n. Jump to the address N times, then fail. */ jump_n, /* Set the following two-byte relative address to the subsequent two-byte number. The address *includes* the two bytes of number. */ set_number_at, wordchar, /* Matches any word-constituent character. */ notwordchar, /* Matches any char that is not a word-constituent. */ wordbeg, /* Succeeds if at word beginning. */ wordend, /* Succeeds if at word end. */ wordbound, /* Succeeds if at a word boundary. */ notwordbound /* Succeeds if not at a word boundary. */ #ifdef emacs ,before_dot, /* Succeeds if before point. */ at_dot, /* Succeeds if at point. */ after_dot, /* Succeeds if after point. */ /* Matches any character whose syntax is specified. Followed by a byte which contains a syntax code, e.g., Sword. */ syntaxspec, /* Matches any character whose syntax is not that specified. */ notsyntaxspec #endif /* emacs */ } re_opcode_t; /* Common operations on the compiled pattern. */ /* Store NUMBER in two contiguous bytes starting at DESTINATION. */ #define STORE_NUMBER(destination, number) \ do { \ (destination)[0] = (number) & 0377; \ (destination)[1] = (number) >> 8; \ } while (0) /* Same as STORE_NUMBER, except increment DESTINATION to the byte after where the number is stored. Therefore, DESTINATION must be an lvalue. */ #define STORE_NUMBER_AND_INCR(destination, number) \ do { \ STORE_NUMBER (destination, number); \ (destination) += 2; \ } while (0) /* Put into DESTINATION a number stored in two contiguous bytes starting at SOURCE. */ #define EXTRACT_NUMBER(destination, source) \ do { \ (destination) = *(source) & 0377; \ (destination) += SIGN_EXTEND_CHAR (*((source) + 1)) << 8; \ } while (0) #ifdef DEBUG static void extract_number (dest, source) int *dest; unsigned char *source; { int temp = SIGN_EXTEND_CHAR (*(source + 1)); *dest = *source & 0377; *dest += temp << 8; } #ifndef EXTRACT_MACROS /* To debug the macros. */ #undef EXTRACT_NUMBER #define EXTRACT_NUMBER(dest, src) extract_number (&dest, src) #endif /* not EXTRACT_MACROS */ #endif /* DEBUG */ /* Same as EXTRACT_NUMBER, except increment SOURCE to after the number. SOURCE must be an lvalue. */ #define EXTRACT_NUMBER_AND_INCR(destination, source) \ do { \ EXTRACT_NUMBER (destination, source); \ (source) += 2; \ } while (0) #ifdef DEBUG static void extract_number_and_incr (destination, source) int *destination; unsigned char **source; { extract_number (destination, *source); *source += 2; } #ifndef EXTRACT_MACROS #undef EXTRACT_NUMBER_AND_INCR #define EXTRACT_NUMBER_AND_INCR(dest, src) \ extract_number_and_incr (&dest, &src) #endif /* not EXTRACT_MACROS */ #endif /* DEBUG */ /* If DEBUG is defined, Regex prints many voluminous messages about what it is doing (if the variable `debug' is nonzero). If linked with the main program in `iregex.c', you can enter patterns and strings interactively. And if linked with the main program in `main.c' and the other test files, you can run the already-written tests. */ #ifdef DEBUG /* We use standard I/O for debugging. */ #include /* It is useful to test things that ``must'' be true when debugging. */ #include static int debug = 0; #define DEBUG_STATEMENT(e) e #define DEBUG_PRINT1(x) if (debug) printf (x) #define DEBUG_PRINT2(x1, x2) if (debug) printf (x1, x2) #define DEBUG_PRINT3(x1, x2, x3) if (debug) printf (x1, x2, x3) #define DEBUG_PRINT4(x1, x2, x3, x4) if (debug) printf (x1, x2, x3, x4) #define DEBUG_PRINT_COMPILED_PATTERN(p, s, e) \ if (debug) print_partial_compiled_pattern (s, e) #define DEBUG_PRINT_DOUBLE_STRING(w, s1, sz1, s2, sz2) \ if (debug) print_double_string (w, s1, sz1, s2, sz2) extern void printchar (); /* Print the fastmap in human-readable form. */ void print_fastmap (fastmap) char *fastmap; { unsigned was_a_range = 0; unsigned i = 0; while (i < (1 << BYTEWIDTH)) { if (fastmap[i++]) { was_a_range = 0; printchar (i - 1); while (i < (1 << BYTEWIDTH) && fastmap[i]) { was_a_range = 1; i++; } if (was_a_range) { printf ("-"); printchar (i - 1); } } } putchar ('\n'); } /* Print a compiled pattern string in human-readable form, starting at the START pointer into it and ending just before the pointer END. */ void print_partial_compiled_pattern (start, end) unsigned char *start; unsigned char *end; { int mcnt, mcnt2; unsigned char *p = start; unsigned char *pend = end; if (start == NULL) { printf ("(null)\n"); return; } /* Loop over pattern commands. */ while (p < pend) { switch ((re_opcode_t) *p++) { case no_op: printf ("/no_op"); break; case exactn: mcnt = *p++; printf ("/exactn/%d", mcnt); do { putchar ('/'); printchar (*p++); } while (--mcnt); break; case start_memory: mcnt = *p++; printf ("/start_memory/%d/%d", mcnt, *p++); break; case stop_memory: mcnt = *p++; printf ("/stop_memory/%d/%d", mcnt, *p++); break; case duplicate: printf ("/duplicate/%d", *p++); break; case anychar: printf ("/anychar"); break; case charset: case charset_not: { register int c; printf ("/charset%s", (re_opcode_t) *(p - 1) == charset_not ? "_not" : ""); assert (p + *p < pend); for (c = 0; c < *p; c++) { unsigned bit; unsigned char map_byte = p[1 + c]; putchar ('/'); for (bit = 0; bit < BYTEWIDTH; bit++) if (map_byte & (1 << bit)) printchar (c * BYTEWIDTH + bit); } p += 1 + *p; break; } case begline: printf ("/begline"); break; case endline: printf ("/endline"); break; case on_failure_jump: extract_number_and_incr (&mcnt, &p); printf ("/on_failure_jump/0/%d", mcnt); break; case on_failure_keep_string_jump: extract_number_and_incr (&mcnt, &p); printf ("/on_failure_keep_string_jump/0/%d", mcnt); break; case dummy_failure_jump: extract_number_and_incr (&mcnt, &p); printf ("/dummy_failure_jump/0/%d", mcnt); break; case push_dummy_failure: printf ("/push_dummy_failure"); break; case maybe_pop_jump: extract_number_and_incr (&mcnt, &p); printf ("/maybe_pop_jump/0/%d", mcnt); break; case pop_failure_jump: extract_number_and_incr (&mcnt, &p); printf ("/pop_failure_jump/0/%d", mcnt); break; case jump_past_alt: extract_number_and_incr (&mcnt, &p); printf ("/jump_past_alt/0/%d", mcnt); break; case jump: extract_number_and_incr (&mcnt, &p); printf ("/jump/0/%d", mcnt); break; case succeed_n: extract_number_and_incr (&mcnt, &p); extract_number_and_incr (&mcnt2, &p); printf ("/succeed_n/0/%d/0/%d", mcnt, mcnt2); break; case jump_n: extract_number_and_incr (&mcnt, &p); extract_number_and_incr (&mcnt2, &p); printf ("/jump_n/0/%d/0/%d", mcnt, mcnt2); break; case set_number_at: extract_number_and_incr (&mcnt, &p); extract_number_and_incr (&mcnt2, &p); printf ("/set_number_at/0/%d/0/%d", mcnt, mcnt2); break; case wordbound: printf ("/wordbound"); break; case notwordbound: printf ("/notwordbound"); break; case wordbeg: printf ("/wordbeg"); break; case wordend: printf ("/wordend"); #ifdef emacs case before_dot: printf ("/before_dot"); break; case at_dot: printf ("/at_dot"); break; case after_dot: printf ("/after_dot"); break; case syntaxspec: printf ("/syntaxspec"); mcnt = *p++; printf ("/%d", mcnt); break; case notsyntaxspec: printf ("/notsyntaxspec"); mcnt = *p++; printf ("/%d", mcnt); break; #endif /* emacs */ case wordchar: printf ("/wordchar"); break; case notwordchar: printf ("/notwordchar"); break; case begbuf: printf ("/begbuf"); break; case endbuf: printf ("/endbuf"); break; default: printf ("?%d", *(p-1)); } } printf ("/\n"); } void print_compiled_pattern (bufp) struct re_pattern_buffer *bufp; { unsigned char *buffer = bufp->buffer; print_partial_compiled_pattern (buffer, buffer + bufp->used); printf ("%d bytes used/%d bytes allocated.\n", bufp->used, bufp->allocated); if (bufp->fastmap_accurate && bufp->fastmap) { printf ("fastmap: "); print_fastmap (bufp->fastmap); } printf ("re_nsub: %d\t", bufp->re_nsub); printf ("regs_alloc: %d\t", bufp->regs_allocated); printf ("can_be_null: %d\t", bufp->can_be_null); printf ("newline_anchor: %d\n", bufp->newline_anchor); printf ("no_sub: %d\t", bufp->no_sub); printf ("not_bol: %d\t", bufp->not_bol); printf ("not_eol: %d\t", bufp->not_eol); printf ("syntax: %d\n", bufp->syntax); /* Perhaps we should print the translate table? */ } void print_double_string (where, string1, size1, string2, size2) char *where; char *string1; char *string2; int size1; int size2; { unsigned this_char; if (where == NULL) printf ("(null)"); else { if (FIRST_STRING_P (where)) { for (this_char = where - string1; this_char < size1; this_char++) printchar (string1[this_char]); where = string2; } for (this_char = where - string2; this_char < size2; this_char++) printchar (string2[this_char]); } } #else /* not DEBUG */ #undef assert #define assert(e) #define DEBUG_STATEMENT(e) #define DEBUG_PRINT1(x) #define DEBUG_PRINT2(x1, x2) #define DEBUG_PRINT3(x1, x2, x3) #define DEBUG_PRINT4(x1, x2, x3, x4) #define DEBUG_PRINT_COMPILED_PATTERN(p, s, e) #define DEBUG_PRINT_DOUBLE_STRING(w, s1, sz1, s2, sz2) #endif /* not DEBUG */ /* Set by `re_set_syntax' to the current regexp syntax to recognize. Can also be assigned to arbitrarily: each pattern buffer stores its own syntax, so it can be changed between regex compilations. */ reg_syntax_t re_syntax_options = RE_SYNTAX_EMACS; /* Specify the precise syntax of regexps for compilation. This provides for compatibility for various utilities which historically have different, incompatible syntaxes. The argument SYNTAX is a bit mask comprised of the various bits defined in regex.h. We return the old syntax. */ reg_syntax_t re_set_syntax (syntax) reg_syntax_t syntax; { reg_syntax_t ret = re_syntax_options; re_syntax_options = syntax; return ret; } /* This table gives an error message for each of the error codes listed in regex.h. Obviously the order here has to be same as there. */ static char *re_error_msg[] = { NULL, /* REG_NOERROR */ "No match", /* REG_NOMATCH */ "Invalid regular expression", /* REG_BADPAT */ "Invalid collation character", /* REG_ECOLLATE */ "Invalid character class name", /* REG_ECTYPE */ "Trailing backslash", /* REG_EESCAPE */ "Invalid back reference", /* REG_ESUBREG */ "Unmatched [ or [^", /* REG_EBRACK */ "Unmatched ( or \\(", /* REG_EPAREN */ "Unmatched \\{", /* REG_EBRACE */ "Invalid content of \\{\\}", /* REG_BADBR */ "Invalid range end", /* REG_ERANGE */ "Memory exhausted", /* REG_ESPACE */ "Invalid preceding regular expression", /* REG_BADRPT */ "Premature end of regular expression", /* REG_EEND */ "Regular expression too big", /* REG_ESIZE */ "Unmatched ) or \\)", /* REG_ERPAREN */ }; /* Subroutine declarations and macros for regex_compile. */ static void store_op1 (), store_op2 (); static void insert_op1 (), insert_op2 (); static boolean at_begline_loc_p (), at_endline_loc_p (); static boolean group_in_compile_stack (); static reg_errcode_t compile_range (); /* Fetch the next character in the uncompiled pattern---translating it if necessary. Also cast from a signed character in the constant string passed to us by the user to an unsigned char that we can use as an array index (in, e.g., `translate'). */ #define PATFETCH(c) \ do {if (p == pend) return REG_EEND; \ c = (unsigned char) *p++; \ if (translate) c = translate[c]; \ } while (0) /* Fetch the next character in the uncompiled pattern, with no translation. */ #define PATFETCH_RAW(c) \ do {if (p == pend) return REG_EEND; \ c = (unsigned char) *p++; \ } while (0) /* Go backwards one character in the pattern. */ #define PATUNFETCH p-- /* If `translate' is non-null, return translate[D], else just D. We cast the subscript to translate because some data is declared as `char *', to avoid warnings when a string constant is passed. But when we use a character as a subscript we must make it unsigned. */ #define TRANSLATE(d) (translate ? translate[(unsigned char) (d)] : (d)) /* Macros for outputting the compiled pattern into `buffer'. */ /* If the buffer isn't allocated when it comes in, use this. */ #define INIT_BUF_SIZE 32 /* Make sure we have at least N more bytes of space in buffer. */ #define GET_BUFFER_SPACE(n) \ while (b - bufp->buffer + (n) > bufp->allocated) \ EXTEND_BUFFER () /* Make sure we have one more byte of buffer space and then add C to it. */ #define BUF_PUSH(c) \ do { \ GET_BUFFER_SPACE (1); \ *b++ = (unsigned char) (c); \ } while (0) /* Ensure we have two more bytes of buffer space and then append C1 and C2. */ #define BUF_PUSH_2(c1, c2) \ do { \ GET_BUFFER_SPACE (2); \ *b++ = (unsigned char) (c1); \ *b++ = (unsigned char) (c2); \ } while (0) /* As with BUF_PUSH_2, except for three bytes. */ #define BUF_PUSH_3(c1, c2, c3) \ do { \ GET_BUFFER_SPACE (3); \ *b++ = (unsigned char) (c1); \ *b++ = (unsigned char) (c2); \ *b++ = (unsigned char) (c3); \ } while (0) /* Store a jump with opcode OP at LOC to location TO. We store a relative address offset by the three bytes the jump itself occupies. */ #define STORE_JUMP(op, loc, to) \ store_op1 (op, loc, (to) - (loc) - 3) /* Likewise, for a two-argument jump. */ #define STORE_JUMP2(op, loc, to, arg) \ store_op2 (op, loc, (to) - (loc) - 3, arg) /* Like `STORE_JUMP', but for inserting. Assume `b' is the buffer end. */ #define INSERT_JUMP(op, loc, to) \ insert_op1 (op, loc, (to) - (loc) - 3, b) /* Like `STORE_JUMP2', but for inserting. Assume `b' is the buffer end. */ #define INSERT_JUMP2(op, loc, to, arg) \ insert_op2 (op, loc, (to) - (loc) - 3, arg, b) /* This is not an arbitrary limit: the arguments which represent offsets into the pattern are two bytes long. So if 2^16 bytes turns out to be too small, many things would have to change. */ #define MAX_BUF_SIZE (1L << 16) /* Extend the buffer by twice its current size via realloc and reset the pointers that pointed into the old block to point to the correct places in the new one. If extending the buffer results in it being larger than MAX_BUF_SIZE, then flag memory exhausted. */ #define EXTEND_BUFFER() \ do { \ unsigned char *old_buffer = bufp->buffer; \ if (bufp->allocated == MAX_BUF_SIZE) \ return REG_ESIZE; \ bufp->allocated <<= 1; \ if (bufp->allocated > MAX_BUF_SIZE) \ bufp->allocated = MAX_BUF_SIZE; \ bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\ if (bufp->buffer == NULL) \ return REG_ESPACE; \ /* If the buffer moved, move all the pointers into it. */ \ if (old_buffer != bufp->buffer) \ { \ b = (b - old_buffer) + bufp->buffer; \ begalt = (begalt - old_buffer) + bufp->buffer; \ if (fixup_alt_jump) \ fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\ if (laststart) \ laststart = (laststart - old_buffer) + bufp->buffer; \ if (pending_exact) \ pending_exact = (pending_exact - old_buffer) + bufp->buffer; \ } \ } while (0) /* Since we have one byte reserved for the register number argument to {start,stop}_memory, the maximum number of groups we can report things about is what fits in that byte. */ #define MAX_REGNUM 255 /* But patterns can have more than `MAX_REGNUM' registers. We just ignore the excess. */ typedef unsigned regnum_t; /* Macros for the compile stack. */ /* Since offsets can go either forwards or backwards, this type needs to be able to hold values from -(MAX_BUF_SIZE - 1) to MAX_BUF_SIZE - 1. */ typedef int pattern_offset_t; typedef struct { pattern_offset_t begalt_offset; pattern_offset_t fixup_alt_jump; pattern_offset_t inner_group_offset; pattern_offset_t laststart_offset; regnum_t regnum; } compile_stack_elt_t; typedef struct { compile_stack_elt_t *stack; unsigned size; unsigned avail; /* Offset of next open position. */ } compile_stack_type; #define INIT_COMPILE_STACK_SIZE 32 #define COMPILE_STACK_EMPTY (compile_stack.avail == 0) #define COMPILE_STACK_FULL (compile_stack.avail == compile_stack.size) /* The next available element. */ #define COMPILE_STACK_TOP (compile_stack.stack[compile_stack.avail]) /* Set the bit for character C in a list. */ #define SET_LIST_BIT(c) \ (b[((unsigned char) (c)) / BYTEWIDTH] \ |= 1 << (((unsigned char) c) % BYTEWIDTH)) /* Get the next unsigned number in the uncompiled pattern. */ #define GET_UNSIGNED_NUMBER(num) \ { if (p != pend) \ { \ PATFETCH (c); \ while (ISDIGIT (c)) \ { \ if (num < 0) \ num = 0; \ num = num * 10 + c - '0'; \ if (p == pend) \ break; \ PATFETCH (c); \ } \ } \ } #define CHAR_CLASS_MAX_LENGTH 6 /* Namely, `xdigit'. */ #define IS_CHAR_CLASS(string) \ (STREQ (string, "alpha") || STREQ (string, "upper") \ || STREQ (string, "lower") || STREQ (string, "digit") \ || STREQ (string, "alnum") || STREQ (string, "xdigit") \ || STREQ (string, "space") || STREQ (string, "print") \ || STREQ (string, "punct") || STREQ (string, "graph") \ || STREQ (string, "cntrl") || STREQ (string, "blank")) /* `regex_compile' compiles PATTERN (of length SIZE) according to SYNTAX. Returns one of error codes defined in `regex.h', or zero for success. Assumes the `allocated' (and perhaps `buffer') and `translate' fields are set in BUFP on entry. If it succeeds, results are put in BUFP (if it returns an error, the contents of BUFP are undefined): `buffer' is the compiled pattern; `syntax' is set to SYNTAX; `used' is set to the length of the compiled pattern; `fastmap_accurate' is zero; `re_nsub' is the number of subexpressions in PATTERN; `not_bol' and `not_eol' are zero; The `fastmap' and `newline_anchor' fields are neither examined nor set. */ static reg_errcode_t regex_compile (pattern, size, syntax, bufp) char *pattern; int size; reg_syntax_t syntax; struct re_pattern_buffer *bufp; { /* We fetch characters from PATTERN here. Even though PATTERN is `char *' (i.e., signed), we declare these variables as unsigned, so they can be reliably used as array indices. */ register unsigned char c, c1; /* A random tempory spot in PATTERN. */ char *p1; /* Points to the end of the buffer, where we should append. */ register unsigned char *b; /* Keeps track of unclosed groups. */ compile_stack_type compile_stack; /* Points to the current (ending) position in the pattern. */ char *p = pattern; char *pend = pattern + size; /* How to translate the characters in the pattern. */ char *translate = bufp->translate; /* Address of the count-byte of the most recently inserted `exactn' command. This makes it possible to tell if a new exact-match character can be added to that command or if the character requires a new `exactn' command. */ unsigned char *pending_exact = 0; /* Address of start of the most recently finished expression. This tells, e.g., postfix * where to find the start of its operand. Reset at the beginning of groups and alternatives. */ unsigned char *laststart = 0; /* Address of beginning of regexp, or inside of last group. */ unsigned char *begalt; /* Place in the uncompiled pattern (i.e., the {) to which to go back if the interval is invalid. */ char *beg_interval; /* Address of the place where a forward jump should go to the end of the containing expression. Each alternative of an `or' -- except the last -- ends with a forward jump of this sort. */ unsigned char *fixup_alt_jump = 0; /* Counts open-groups as they are encountered. Remembered for the matching close-group on the compile stack, so the same register number is put in the stop_memory as the start_memory. */ regnum_t regnum = 0; #ifdef DEBUG DEBUG_PRINT1 ("\nCompiling pattern: "); if (debug) { unsigned debug_count; for (debug_count = 0; debug_count < size; debug_count++) printchar (pattern[debug_count]); putchar ('\n'); } #endif /* DEBUG */ /* Initialize the compile stack. */ compile_stack.stack = TALLOC (INIT_COMPILE_STACK_SIZE, compile_stack_elt_t); if (compile_stack.stack == NULL) return REG_ESPACE; compile_stack.size = INIT_COMPILE_STACK_SIZE; compile_stack.avail = 0; /* Initialize the pattern buffer. */ bufp->syntax = syntax; bufp->fastmap_accurate = 0; bufp->not_bol = bufp->not_eol = 0; /* Set `used' to zero, so that if we return an error, the pattern printer (for debugging) will think there's no pattern. We reset it at the end. */ bufp->used = 0; /* Always count groups, whether or not bufp->no_sub is set. */ bufp->re_nsub = 0; #if !defined (emacs) && !defined (SYNTAX_TABLE) /* Initialize the syntax table. */ init_syntax_once (); #endif if (bufp->allocated == 0) { if (bufp->buffer) { /* If zero allocated, but buffer is non-null, try to realloc enough space. This loses if buffer's address is bogus, but that is the user's responsibility. */ RETALLOC (bufp->buffer, INIT_BUF_SIZE, unsigned char); } else { /* Caller did not allocate a buffer. Do it for them. */ bufp->buffer = TALLOC (INIT_BUF_SIZE, unsigned char); } if (!bufp->buffer) return REG_ESPACE; bufp->allocated = INIT_BUF_SIZE; } begalt = b = bufp->buffer; /* Loop through the uncompiled pattern until we're at the end. */ while (p != pend) { PATFETCH (c); switch (c) { case '^': { if ( /* If at start of pattern, it's an operator. */ p == pattern + 1 /* If context independent, it's an operator. */ || syntax & RE_CONTEXT_INDEP_ANCHORS /* Otherwise, depends on what's come before. */ || at_begline_loc_p (pattern, p, syntax)) BUF_PUSH (begline); else goto normal_char; } break; case '$': { if ( /* If at end of pattern, it's an operator. */ p == pend /* If context independent, it's an operator. */ || syntax & RE_CONTEXT_INDEP_ANCHORS /* Otherwise, depends on what's next. */ || at_endline_loc_p (p, pend, syntax)) BUF_PUSH (endline); else goto normal_char; } break; case '+': case '?': if ((syntax & RE_BK_PLUS_QM) || (syntax & RE_LIMITED_OPS)) goto normal_char; handle_plus: case '*': /* If there is no previous pattern... */ if (!laststart) { if (syntax & RE_CONTEXT_INVALID_OPS) return REG_BADRPT; else if (!(syntax & RE_CONTEXT_INDEP_OPS)) goto normal_char; } { /* Are we optimizing this jump? */ boolean keep_string_p = false; /* 1 means zero (many) matches is allowed. */ char zero_times_ok = 0, many_times_ok = 0; /* If there is a sequence of repetition chars, collapse it down to just one (the right one). We can't combine interval operators with these because of, e.g., `a{2}*', which should only match an even number of `a's. */ for (;;) { zero_times_ok |= c != '+'; many_times_ok |= c != '?'; if (p == pend) break; PATFETCH (c); if (c == '*' || (!(syntax & RE_BK_PLUS_QM) && (c == '+' || c == '?'))) ; else if (syntax & RE_BK_PLUS_QM && c == '\\') { if (p == pend) return REG_EESCAPE; PATFETCH (c1); if (!(c1 == '+' || c1 == '?')) { PATUNFETCH; PATUNFETCH; break; } c = c1; } else { PATUNFETCH; break; } /* If we get here, we found another repeat character. */ } /* Star, etc. applied to an empty pattern is equivalent to an empty pattern. */ if (!laststart) break; /* Now we know whether or not zero matches is allowed and also whether or not two or more matches is allowed. */ if (many_times_ok) { /* More than one repetition is allowed, so put in at the end a backward relative jump from `b' to before the next jump we're going to put in below (which jumps from laststart to after this jump). But if we are at the `*' in the exact sequence `.*\n', insert an unconditional jump backwards to the ., instead of the beginning of the loop. This way we only push a failure point once, instead of every time through the loop. */ assert (p - 1 > pattern); /* Allocate the space for the jump. */ GET_BUFFER_SPACE (3); /* We know we are not at the first character of the pattern, because laststart was nonzero. And we've already incremented `p', by the way, to be the character after the `*'. Do we have to do something analogous here for null bytes, because of RE_DOT_NOT_NULL? */ if (TRANSLATE (*(p - 2)) == TRANSLATE ('.') && zero_times_ok && p < pend && TRANSLATE (*p) == TRANSLATE ('\n') && !(syntax & RE_DOT_NEWLINE)) { /* We have .*\n. */ STORE_JUMP (jump, b, laststart); keep_string_p = true; } else /* Anything else. */ STORE_JUMP (maybe_pop_jump, b, laststart - 3); /* We've added more stuff to the buffer. */ b += 3; } /* On failure, jump from laststart to b + 3, which will be the end of the buffer after this jump is inserted. */ GET_BUFFER_SPACE (3); INSERT_JUMP (keep_string_p ? on_failure_keep_string_jump : on_failure_jump, laststart, b + 3); pending_exact = 0; b += 3; if (!zero_times_ok) { /* At least one repetition is required, so insert a `dummy_failure_jump' before the initial `on_failure_jump' instruction of the loop. This effects a skip over that instruction the first time we hit that loop. */ GET_BUFFER_SPACE (3); INSERT_JUMP (dummy_failure_jump, laststart, laststart + 6); b += 3; } } break; case '.': laststart = b; BUF_PUSH (anychar); break; case '[': { boolean had_char_class = false; if (p == pend) return REG_EBRACK; /* Ensure that we have enough space to push a charset: the opcode, the length count, and the bitset; 34 bytes in all. */ GET_BUFFER_SPACE (34); laststart = b; /* We test `*p == '^' twice, instead of using an if statement, so we only need one BUF_PUSH. */ BUF_PUSH (*p == '^' ? charset_not : charset); if (*p == '^') p++; /* Remember the first position in the bracket expression. */ p1 = p; /* Push the number of bytes in the bitmap. */ BUF_PUSH ((1 << BYTEWIDTH) / BYTEWIDTH); /* Clear the whole map. */ bzero (b, (1 << BYTEWIDTH) / BYTEWIDTH); /* charset_not matches newline according to a syntax bit. */ if ((re_opcode_t) b[-2] == charset_not && (syntax & RE_HAT_LISTS_NOT_NEWLINE)) SET_LIST_BIT ('\n'); /* Read in characters and ranges, setting map bits. */ for (;;) { if (p == pend) return REG_EBRACK; PATFETCH (c); /* \ might escape characters inside [...] and [^...]. */ if ((syntax & RE_BACKSLASH_ESCAPE_IN_LISTS) && c == '\\') { if (p == pend) return REG_EESCAPE; PATFETCH (c1); SET_LIST_BIT (c1); continue; } /* Could be the end of the bracket expression. If it's not (i.e., when the bracket expression is `[]' so far), the ']' character bit gets set way below. */ if (c == ']' && p != p1 + 1) break; /* Look ahead to see if it's a range when the last thing was a character class. */ if (had_char_class && c == '-' && *p != ']') return REG_ERANGE; /* Look ahead to see if it's a range when the last thing was a character: if this is a hyphen not at the beginning or the end of a list, then it's the range operator. */ if (c == '-' && !(p - 2 >= pattern && p[-2] == '[') && !(p - 3 >= pattern && p[-3] == '[' && p[-2] == '^') && *p != ']') { reg_errcode_t ret = compile_range (&p, pend, translate, syntax, b); if (ret != REG_NOERROR) return ret; } else if (p[0] == '-' && p[1] != ']') { /* This handles ranges made up of characters only. */ reg_errcode_t ret; /* Move past the `-'. */ PATFETCH (c1); ret = compile_range (&p, pend, translate, syntax, b); if (ret != REG_NOERROR) return ret; } /* See if we're at the beginning of a possible character class. */ else if (syntax & RE_CHAR_CLASSES && c == '[' && *p == ':') { /* Leave room for the null. */ char str[CHAR_CLASS_MAX_LENGTH + 1]; PATFETCH (c); c1 = 0; /* If pattern is `[[:'. */ if (p == pend) return REG_EBRACK; for (;;) { PATFETCH (c); if (c == ':' || c == ']' || p == pend || c1 == CHAR_CLASS_MAX_LENGTH) break; str[c1++] = c; } str[c1] = '\0'; /* If isn't a word bracketed by `[:' and:`]': undo the ending character, the letters, and leave the leading `:' and `[' (but set bits for them). */ if (c == ':' && *p == ']') { int ch; boolean is_alnum = STREQ (str, "alnum"); boolean is_alpha = STREQ (str, "alpha"); boolean is_blank = STREQ (str, "blank"); boolean is_cntrl = STREQ (str, "cntrl"); boolean is_digit = STREQ (str, "digit"); boolean is_graph = STREQ (str, "graph"); boolean is_lower = STREQ (str, "lower"); boolean is_print = STREQ (str, "print"); boolean is_punct = STREQ (str, "punct"); boolean is_space = STREQ (str, "space"); boolean is_upper = STREQ (str, "upper"); boolean is_xdigit = STREQ (str, "xdigit"); if (!IS_CHAR_CLASS (str)) return REG_ECTYPE; /* Throw away the ] at the end of the character class. */ PATFETCH (c); if (p == pend) return REG_EBRACK; for (ch = 0; ch < 1 << BYTEWIDTH; ch++) { if ( (is_alnum && ISALNUM (ch)) || (is_alpha && ISALPHA (ch)) || (is_blank && ISBLANK (ch)) || (is_cntrl && ISCNTRL (ch)) || (is_digit && ISDIGIT (ch)) || (is_graph && ISGRAPH (ch)) || (is_lower && ISLOWER (ch)) || (is_print && ISPRINT (ch)) || (is_punct && ISPUNCT (ch)) || (is_space && ISSPACE (ch)) || (is_upper && ISUPPER (ch)) || (is_xdigit && ISXDIGIT (ch))) SET_LIST_BIT (ch); } had_char_class = true; } else { c1++; while (c1--) PATUNFETCH; SET_LIST_BIT ('['); SET_LIST_BIT (':'); had_char_class = false; } } else { had_char_class = false; SET_LIST_BIT (c); } } /* Discard any (non)matching list bytes that are all 0 at the end of the map. Decrease the map-length byte too. */ while ((int) b[-1] > 0 && b[b[-1] - 1] == 0) b[-1]--; b += b[-1]; } break; case '(': if (syntax & RE_NO_BK_PARENS) goto handle_open; else goto normal_char; case ')': if (syntax & RE_NO_BK_PARENS) goto handle_close; else goto normal_char; case '\n': if (syntax & RE_NEWLINE_ALT) goto handle_alt; else goto normal_char; case '|': if (syntax & RE_NO_BK_VBAR) goto handle_alt; else goto normal_char; case '{': if (syntax & RE_INTERVALS && syntax & RE_NO_BK_BRACES) goto handle_interval; else goto normal_char; case '\\': if (p == pend) return REG_EESCAPE; /* Do not translate the character after the \, so that we can distinguish, e.g., \B from \b, even if we normally would translate, e.g., B to b. */ PATFETCH_RAW (c); switch (c) { case '(': if (syntax & RE_NO_BK_PARENS) goto normal_backslash; handle_open: bufp->re_nsub++; regnum++; if (COMPILE_STACK_FULL) { RETALLOC (compile_stack.stack, compile_stack.size << 1, compile_stack_elt_t); if (compile_stack.stack == NULL) return REG_ESPACE; compile_stack.size <<= 1; } /* These are the values to restore when we hit end of this group. They are all relative offsets, so that if the whole pattern moves because of realloc, they will still be valid. */ COMPILE_STACK_TOP.begalt_offset = begalt - bufp->buffer; COMPILE_STACK_TOP.fixup_alt_jump = fixup_alt_jump ? fixup_alt_jump - bufp->buffer + 1 : 0; COMPILE_STACK_TOP.laststart_offset = b - bufp->buffer; COMPILE_STACK_TOP.regnum = regnum; /* We will eventually replace the 0 with the number of groups inner to this one. But do not push a start_memory for groups beyond the last one we can represent in the compiled pattern. */ if (regnum <= MAX_REGNUM) { COMPILE_STACK_TOP.inner_group_offset = b - bufp->buffer + 2; BUF_PUSH_3 (start_memory, regnum, 0); } compile_stack.avail++; fixup_alt_jump = 0; laststart = 0; begalt = b; /* If we've reached MAX_REGNUM groups, then this open won't actually generate any code, so we'll have to clear pending_exact explicitly. */ pending_exact = 0; break; case ')': if (syntax & RE_NO_BK_PARENS) goto normal_backslash; if (COMPILE_STACK_EMPTY) if (syntax & RE_UNMATCHED_RIGHT_PAREN_ORD) goto normal_backslash; else return REG_ERPAREN; handle_close: if (fixup_alt_jump) { /* Push a dummy failure point at the end of the alternative for a possible future `pop_failure_jump' to pop. See comments at `push_dummy_failure' in `re_match_2'. */ BUF_PUSH (push_dummy_failure); /* We allocated space for this jump when we assigned to `fixup_alt_jump', in the `handle_alt' case below. */ STORE_JUMP (jump_past_alt, fixup_alt_jump, b - 1); } /* See similar code for backslashed left paren above. */ if (COMPILE_STACK_EMPTY) if (syntax & RE_UNMATCHED_RIGHT_PAREN_ORD) goto normal_char; else return REG_ERPAREN; /* Since we just checked for an empty stack above, this ``can't happen''. */ assert (compile_stack.avail != 0); { /* We don't just want to restore into `regnum', because later groups should continue to be numbered higher, as in `(ab)c(de)' -- the second group is #2. */ regnum_t this_group_regnum; compile_stack.avail--; begalt = bufp->buffer + COMPILE_STACK_TOP.begalt_offset; fixup_alt_jump = COMPILE_STACK_TOP.fixup_alt_jump ? bufp->buffer + COMPILE_STACK_TOP.fixup_alt_jump - 1 : 0; laststart = bufp->buffer + COMPILE_STACK_TOP.laststart_offset; this_group_regnum = COMPILE_STACK_TOP.regnum; /* If we've reached MAX_REGNUM groups, then this open won't actually generate any code, so we'll have to clear pending_exact explicitly. */ pending_exact = 0; /* We're at the end of the group, so now we know how many groups were inside this one. */ if (this_group_regnum <= MAX_REGNUM) { unsigned char *inner_group_loc = bufp->buffer + COMPILE_STACK_TOP.inner_group_offset; *inner_group_loc = regnum - this_group_regnum; BUF_PUSH_3 (stop_memory, this_group_regnum, regnum - this_group_regnum); } } break; case '|': /* `\|'. */ if (syntax & RE_LIMITED_OPS || syntax & RE_NO_BK_VBAR) goto normal_backslash; handle_alt: if (syntax & RE_LIMITED_OPS) goto normal_char; /* Insert before the previous alternative a jump which jumps to this alternative if the former fails. */ GET_BUFFER_SPACE (3); INSERT_JUMP (on_failure_jump, begalt, b + 6); pending_exact = 0; b += 3; /* The alternative before this one has a jump after it which gets executed if it gets matched. Adjust that jump so it will jump to this alternative's analogous jump (put in below, which in turn will jump to the next (if any) alternative's such jump, etc.). The last such jump jumps to the correct final destination. A picture: _____ _____ | | | | | v | v a | b | c If we are at `b', then fixup_alt_jump right now points to a three-byte space after `a'. We'll put in the jump, set fixup_alt_jump to right after `b', and leave behind three bytes which we'll fill in when we get to after `c'. */ if (fixup_alt_jump) STORE_JUMP (jump_past_alt, fixup_alt_jump, b); /* Mark and leave space for a jump after this alternative, to be filled in later either by next alternative or when know we're at the end of a series of alternatives. */ fixup_alt_jump = b; GET_BUFFER_SPACE (3); b += 3; laststart = 0; begalt = b; break; case '{': /* If \{ is a literal. */ if (!(syntax & RE_INTERVALS) /* If we're at `\{' and it's not the open-interval operator. */ || ((syntax & RE_INTERVALS) && (syntax & RE_NO_BK_BRACES)) || (p - 2 == pattern && p == pend)) goto normal_backslash; handle_interval: { /* If got here, then the syntax allows intervals. */ /* At least (most) this many matches must be made. */ int lower_bound = -1, upper_bound = -1; beg_interval = p - 1; if (p == pend) { if (syntax & RE_NO_BK_BRACES) goto unfetch_interval; else return REG_EBRACE; } GET_UNSIGNED_NUMBER (lower_bound); if (c == ',') { GET_UNSIGNED_NUMBER (upper_bound); if (upper_bound < 0) upper_bound = RE_DUP_MAX; } else /* Interval such as `{1}' => match exactly once. */ upper_bound = lower_bound; if (lower_bound < 0 || upper_bound > RE_DUP_MAX || lower_bound > upper_bound) { if (syntax & RE_NO_BK_BRACES) goto unfetch_interval; else return REG_BADBR; } if (!(syntax & RE_NO_BK_BRACES)) { if (c != '\\') return REG_EBRACE; PATFETCH (c); } if (c != '}') { if (syntax & RE_NO_BK_BRACES) goto unfetch_interval; else return REG_BADBR; } /* We just parsed a valid interval. */ /* If it's invalid to have no preceding re. */ if (!laststart) { if (syntax & RE_CONTEXT_INVALID_OPS) return REG_BADRPT; else if (syntax & RE_CONTEXT_INDEP_OPS) laststart = b; else goto unfetch_interval; } /* If the upper bound is zero, don't want to succeed at all; jump from `laststart' to `b + 3', which will be the end of the buffer after we insert the jump. */ if (upper_bound == 0) { GET_BUFFER_SPACE (3); INSERT_JUMP (jump, laststart, b + 3); b += 3; } /* Otherwise, we have a nontrivial interval. When we're all done, the pattern will look like: set_number_at set_number_at succeed_n jump_n (The upper bound and `jump_n' are omitted if `upper_bound' is 1, though.) */ else { /* If the upper bound is > 1, we need to insert more at the end of the loop. */ unsigned nbytes = 10 + (upper_bound > 1) * 10; GET_BUFFER_SPACE (nbytes); /* Initialize lower bound of the `succeed_n', even though it will be set during matching by its attendant `set_number_at' (inserted next), because `re_compile_fastmap' needs to know. Jump to the `jump_n' we might insert below. */ INSERT_JUMP2 (succeed_n, laststart, b + 5 + (upper_bound > 1) * 5, lower_bound); b += 5; /* Code to initialize the lower bound. Insert before the `succeed_n'. The `5' is the last two bytes of this `set_number_at', plus 3 bytes of the following `succeed_n'. */ insert_op2 (set_number_at, laststart, 5, lower_bound, b); b += 5; if (upper_bound > 1) { /* More than one repetition is allowed, so append a backward jump to the `succeed_n' that starts this interval. When we've reached this during matching, we'll have matched the interval once, so jump back only `upper_bound - 1' times. */ STORE_JUMP2 (jump_n, b, laststart + 5, upper_bound - 1); b += 5; /* The location we want to set is the second parameter of the `jump_n'; that is `b-2' as an absolute address. `laststart' will be the `set_number_at' we're about to insert; `laststart+3' the number to set, the source for the relative address. But we are inserting into the middle of the pattern -- so everything is getting moved up by 5. Conclusion: (b - 2) - (laststart + 3) + 5, i.e., b - laststart. We insert this at the beginning of the loop so that if we fail during matching, we'll reinitialize the bounds. */ insert_op2 (set_number_at, laststart, b - laststart, upper_bound - 1, b); b += 5; } } pending_exact = 0; beg_interval = NULL; } break; unfetch_interval: /* If an invalid interval, match the characters as literals. */ assert (beg_interval); p = beg_interval; beg_interval = NULL; /* normal_char and normal_backslash need `c'. */ PATFETCH (c); if (!(syntax & RE_NO_BK_BRACES)) { if (p > pattern && p[-1] == '\\') goto normal_backslash; } goto normal_char; #ifdef emacs /* There is no way to specify the before_dot and after_dot operators. rms says this is ok. --karl */ case '=': BUF_PUSH (at_dot); break; case 's': laststart = b; PATFETCH (c); BUF_PUSH_2 (syntaxspec, syntax_spec_code[c]); break; case 'S': laststart = b; PATFETCH (c); BUF_PUSH_2 (notsyntaxspec, syntax_spec_code[c]); break; #endif /* emacs */ case 'w': laststart = b; BUF_PUSH (wordchar); break; case 'W': laststart = b; BUF_PUSH (notwordchar); break; case '<': BUF_PUSH (wordbeg); break; case '>': BUF_PUSH (wordend); break; case 'b': BUF_PUSH (wordbound); break; case 'B': BUF_PUSH (notwordbound); break; case '`': BUF_PUSH (begbuf); break; case '\'': BUF_PUSH (endbuf); break; case '1': case '2': case '3': case '4': case '5': case '6': case '7': case '8': case '9': if (syntax & RE_NO_BK_REFS) goto normal_char; c1 = c - '0'; if (c1 > regnum) return REG_ESUBREG; /* Can't back reference to a subexpression if inside of it. */ if (group_in_compile_stack (compile_stack, c1)) goto normal_char; laststart = b; BUF_PUSH_2 (duplicate, c1); break; case '+': case '?': if (syntax & RE_BK_PLUS_QM) goto handle_plus; else goto normal_backslash; default: normal_backslash: /* You might think it would be useful for \ to mean not to translate; but if we don't translate it it will never match anything. */ c = TRANSLATE (c); goto normal_char; } break; default: /* Expects the character in `c'. */ normal_char: /* If no exactn currently being built. */ if (!pending_exact /* If last exactn not at current position. */ || pending_exact + *pending_exact + 1 != b /* We have only one byte following the exactn for the count. */ || *pending_exact == (1 << BYTEWIDTH) - 1 /* If followed by a repetition operator. */ || *p == '*' || *p == '^' || ((syntax & RE_BK_PLUS_QM) ? *p == '\\' && (p[1] == '+' || p[1] == '?') : (*p == '+' || *p == '?')) || ((syntax & RE_INTERVALS) && ((syntax & RE_NO_BK_BRACES) ? *p == '{' : (p[0] == '\\' && p[1] == '{')))) { /* Start building a new exactn. */ laststart = b; BUF_PUSH_2 (exactn, 0); pending_exact = b - 1; } BUF_PUSH (c); (*pending_exact)++; break; } /* switch (c) */ } /* while p != pend */ /* Through the pattern now. */ if (fixup_alt_jump) STORE_JUMP (jump_past_alt, fixup_alt_jump, b); if (!COMPILE_STACK_EMPTY) return REG_EPAREN; free (compile_stack.stack); /* We have succeeded; set the length of the buffer. */ bufp->used = b - bufp->buffer; #ifdef DEBUG if (debug) { DEBUG_PRINT1 ("\nCompiled pattern: "); print_compiled_pattern (bufp); } #endif /* DEBUG */ return REG_NOERROR; } /* regex_compile */ /* Subroutines for `regex_compile'. */ /* Store OP at LOC followed by two-byte integer parameter ARG. */ static void store_op1 (op, loc, arg) re_opcode_t op; unsigned char *loc; int arg; { *loc = (unsigned char) op; STORE_NUMBER (loc + 1, arg); } /* Like `store_op1', but for two two-byte parameters ARG1 and ARG2. */ static void store_op2 (op, loc, arg1, arg2) re_opcode_t op; unsigned char *loc; int arg1, arg2; { *loc = (unsigned char) op; STORE_NUMBER (loc + 1, arg1); STORE_NUMBER (loc + 3, arg2); } /* Copy the bytes from LOC to END to open up three bytes of space at LOC for OP followed by two-byte integer parameter ARG. */ static void insert_op1 (op, loc, arg, end) re_opcode_t op; unsigned char *loc; int arg; unsigned char *end; { register unsigned char *pfrom = end; register unsigned char *pto = end + 3; while (pfrom != loc) *--pto = *--pfrom; store_op1 (op, loc, arg); } /* Like `insert_op1', but for two two-byte parameters ARG1 and ARG2. */ static void insert_op2 (op, loc, arg1, arg2, end) re_opcode_t op; unsigned char *loc; int arg1, arg2; unsigned char *end; { register unsigned char *pfrom = end; register unsigned char *pto = end + 5; while (pfrom != loc) *--pto = *--pfrom; store_op2 (op, loc, arg1, arg2); } /* P points to just after a ^ in PATTERN. Return true if that ^ comes after an alternative or a begin-subexpression. We assume there is at least one character before the ^. */ static boolean at_begline_loc_p (pattern, p, syntax) char *pattern, *p; reg_syntax_t syntax; { char *prev = p - 2; boolean prev_prev_backslash = prev > pattern && prev[-1] == '\\'; return /* After a subexpression? */ (*prev == '(' && (syntax & RE_NO_BK_PARENS || prev_prev_backslash)) /* After an alternative? */ || (*prev == '|' && (syntax & RE_NO_BK_VBAR || prev_prev_backslash)); } /* The dual of at_begline_loc_p. This one is for $. We assume there is at least one character after the $, i.e., `P < PEND'. */ static boolean at_endline_loc_p (p, pend, syntax) char *p, *pend; int syntax; { char *next = p; boolean next_backslash = *next == '\\'; char *next_next = p + 1 < pend ? p + 1 : NULL; return /* Before a subexpression? */ (syntax & RE_NO_BK_PARENS ? *next == ')' : next_backslash && next_next && *next_next == ')') /* Before an alternative? */ || (syntax & RE_NO_BK_VBAR ? *next == '|' : next_backslash && next_next && *next_next == '|'); } /* Returns true if REGNUM is in one of COMPILE_STACK's elements and false if it's not. */ static boolean group_in_compile_stack (compile_stack, regnum) compile_stack_type compile_stack; regnum_t regnum; { int this_element; for (this_element = compile_stack.avail - 1; this_element >= 0; this_element--) if (compile_stack.stack[this_element].regnum == regnum) return true; return false; } /* Read the ending character of a range (in a bracket expression) from the uncompiled pattern *P_PTR (which ends at PEND). We assume the starting character is in `P[-2]'. (`P[-1]' is the character `-'.) Then we set the translation of all bits between the starting and ending characters (inclusive) in the compiled pattern B. Return an error code. We use these short variable names so we can use the same macros as `regex_compile' itself. */ static reg_errcode_t compile_range (p_ptr, pend, translate, syntax, b) char **p_ptr, *pend; char *translate; reg_syntax_t syntax; unsigned char *b; { unsigned this_char; char *p = *p_ptr; int range_start, range_end; if (p == pend) return REG_ERANGE; /* Even though the pattern is a signed `char *', we need to fetch with unsigned char *'s; if the high bit of the pattern character is set, the range endpoints will be negative if we fetch using a signed char *. We also want to fetch the endpoints without translating them; the appropriate translation is done in the bit-setting loop below. */ range_start = ((unsigned char *) p)[-2]; range_end = ((unsigned char *) p)[0]; /* Have to increment the pointer into the pattern string, so the caller isn't still at the ending character. */ (*p_ptr)++; /* If the start is after the end, the range is empty. */ if (range_start > range_end) return syntax & RE_NO_EMPTY_RANGES ? REG_ERANGE : REG_NOERROR; /* Here we see why `this_char' has to be larger than an `unsigned char' -- the range is inclusive, so if `range_end' == 0xff (assuming 8-bit characters), we would otherwise go into an infinite loop, since all characters <= 0xff. */ for (this_char = range_start; this_char <= range_end; this_char++) { SET_LIST_BIT (TRANSLATE (this_char)); } return REG_NOERROR; } /* Failure stack declarations and macros; both re_compile_fastmap and re_match_2 use a failure stack. These have to be macros because of REGEX_ALLOCATE. */ /* Number of failure points for which to initially allocate space when matching. If this number is exceeded, we allocate more space, so it is not a hard limit. */ #ifndef INIT_FAILURE_ALLOC #define INIT_FAILURE_ALLOC 5 #endif /* Roughly the maximum number of failure points on the stack. Would be exactly that if always used MAX_FAILURE_SPACE each time we failed. This is a variable only so users of regex can assign to it; we never change it ourselves. */ int re_max_failures = 2000; typedef unsigned char *fail_stack_elt_t; typedef struct { fail_stack_elt_t *stack; unsigned size; unsigned avail; /* Offset of next open position. */ } fail_stack_type; #define FAIL_STACK_EMPTY() (fail_stack.avail == 0) #define FAIL_STACK_PTR_EMPTY() (fail_stack_ptr->avail == 0) #define FAIL_STACK_FULL() (fail_stack.avail == fail_stack.size) #define FAIL_STACK_TOP() (fail_stack.stack[fail_stack.avail]) /* Initialize `fail_stack'. Do `return -2' if the alloc fails. */ #define INIT_FAIL_STACK() \ do { \ fail_stack.stack = (fail_stack_elt_t *) \ REGEX_ALLOCATE (INIT_FAILURE_ALLOC * sizeof (fail_stack_elt_t)); \ \ if (fail_stack.stack == NULL) \ return -2; \ \ fail_stack.size = INIT_FAILURE_ALLOC; \ fail_stack.avail = 0; \ } while (0) /* Double the size of FAIL_STACK, up to approximately `re_max_failures' items. Return 1 if succeeds, and 0 if either ran out of memory allocating space for it or it was already too large. REGEX_REALLOCATE requires `destination' be declared. */ #define DOUBLE_FAIL_STACK(fail_stack) \ ((fail_stack).size > re_max_failures * MAX_FAILURE_ITEMS \ ? 0 \ : ((fail_stack).stack = (fail_stack_elt_t *) \ REGEX_REALLOCATE ((fail_stack).stack, \ (fail_stack).size * sizeof (fail_stack_elt_t), \ ((fail_stack).size << 1) * sizeof (fail_stack_elt_t)), \ \ (fail_stack).stack == NULL \ ? 0 \ : ((fail_stack).size <<= 1, \ 1))) /* Push PATTERN_OP on FAIL_STACK. Return 1 if was able to do so and 0 if ran out of memory allocating space to do so. */ #define PUSH_PATTERN_OP(pattern_op, fail_stack) \ ((FAIL_STACK_FULL () \ && !DOUBLE_FAIL_STACK (fail_stack)) \ ? 0 \ : ((fail_stack).stack[(fail_stack).avail++] = pattern_op, \ 1)) /* This pushes an item onto the failure stack. Must be a four-byte value. Assumes the variable `fail_stack'. Probably should only be called from within `PUSH_FAILURE_POINT'. */ #define PUSH_FAILURE_ITEM(item) \ fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item /* The complement operation. Assumes `fail_stack' is nonempty. */ #define POP_FAILURE_ITEM() fail_stack.stack[--fail_stack.avail] /* Used to omit pushing failure point id's when we're not debugging. */ #ifdef DEBUG #define DEBUG_PUSH PUSH_FAILURE_ITEM #define DEBUG_POP(item_addr) *(item_addr) = POP_FAILURE_ITEM () #else #define DEBUG_PUSH(item) #define DEBUG_POP(item_addr) #endif /* Push the information about the state we will need if we ever fail back to it. Requires variables fail_stack, regstart, regend, reg_info, and num_regs be declared. DOUBLE_FAIL_STACK requires `destination' be declared. Does `return FAILURE_CODE' if runs out of memory. */ #define PUSH_FAILURE_POINT(pattern_place, string_place, failure_code) \ do { \ char *destination; \ /* Must be int, so when we don't save any registers, the arithmetic \ of 0 + -1 isn't done as unsigned. */ \ int this_reg; \ \ DEBUG_STATEMENT (failure_id++); \ DEBUG_STATEMENT (nfailure_points_pushed++); \ DEBUG_PRINT2 ("\nPUSH_FAILURE_POINT #%u:\n", failure_id); \ DEBUG_PRINT2 (" Before push, next avail: %d\n", (fail_stack).avail);\ DEBUG_PRINT2 (" size: %d\n", (fail_stack).size);\ \ DEBUG_PRINT2 (" slots needed: %d\n", NUM_FAILURE_ITEMS); \ DEBUG_PRINT2 (" available: %d\n", REMAINING_AVAIL_SLOTS); \ \ /* Ensure we have enough space allocated for what we will push. */ \ while (REMAINING_AVAIL_SLOTS < NUM_FAILURE_ITEMS) \ { \ if (!DOUBLE_FAIL_STACK (fail_stack)) \ return failure_code; \ \ DEBUG_PRINT2 ("\n Doubled stack; size now: %d\n", \ (fail_stack).size); \ DEBUG_PRINT2 (" slots available: %d\n", REMAINING_AVAIL_SLOTS);\ } \ \ /* Push the info, starting with the registers. */ \ DEBUG_PRINT1 ("\n"); \ \ for (this_reg = lowest_active_reg; this_reg <= highest_active_reg; \ this_reg++) \ { \ DEBUG_PRINT2 (" Pushing reg: %d\n", this_reg); \ DEBUG_STATEMENT (num_regs_pushed++); \ \ DEBUG_PRINT2 (" start: 0x%x\n", regstart[this_reg]); \ PUSH_FAILURE_ITEM (regstart[this_reg]); \ \ DEBUG_PRINT2 (" end: 0x%x\n", regend[this_reg]); \ PUSH_FAILURE_ITEM (regend[this_reg]); \ \ DEBUG_PRINT2 (" info: 0x%x\n ", reg_info[this_reg]); \ DEBUG_PRINT2 (" match_null=%d", \ REG_MATCH_NULL_STRING_P (reg_info[this_reg])); \ DEBUG_PRINT2 (" active=%d", IS_ACTIVE (reg_info[this_reg])); \ DEBUG_PRINT2 (" matched_something=%d", \ MATCHED_SOMETHING (reg_info[this_reg])); \ DEBUG_PRINT2 (" ever_matched=%d", \ EVER_MATCHED_SOMETHING (reg_info[this_reg])); \ DEBUG_PRINT1 ("\n"); \ PUSH_FAILURE_ITEM (reg_info[this_reg].word); \ } \ \ DEBUG_PRINT2 (" Pushing low active reg: %d\n", lowest_active_reg);\ PUSH_FAILURE_ITEM ((unsigned long)lowest_active_reg); \ \ DEBUG_PRINT2 (" Pushing high active reg: %d\n", highest_active_reg);\ PUSH_FAILURE_ITEM ((unsigned long)highest_active_reg); \ \ DEBUG_PRINT2 (" Pushing pattern 0x%x: ", pattern_place); \ DEBUG_PRINT_COMPILED_PATTERN (bufp, pattern_place, pend); \ PUSH_FAILURE_ITEM (pattern_place); \ \ DEBUG_PRINT2 (" Pushing string 0x%x: `", string_place); \ DEBUG_PRINT_DOUBLE_STRING (string_place, string1, size1, string2, \ size2); \ DEBUG_PRINT1 ("'\n"); \ PUSH_FAILURE_ITEM (string_place); \ \ DEBUG_PRINT2 (" Pushing failure id: %u\n", failure_id); \ DEBUG_PUSH (failure_id); \ } while (0) /* This is the number of items that are pushed and popped on the stack for each register. */ #define NUM_REG_ITEMS 3 /* Individual items aside from the registers. */ #ifdef DEBUG #define NUM_NONREG_ITEMS 5 /* Includes failure point id. */ #else #define NUM_NONREG_ITEMS 4 #endif /* We push at most this many items on the stack. */ #define MAX_FAILURE_ITEMS ((num_regs - 1) * NUM_REG_ITEMS + NUM_NONREG_ITEMS) /* We actually push this many items. */ #define NUM_FAILURE_ITEMS \ ((highest_active_reg - lowest_active_reg + 1) * NUM_REG_ITEMS \ + NUM_NONREG_ITEMS) /* How many items can still be added to the stack without overflowing it. */ #define REMAINING_AVAIL_SLOTS ((fail_stack).size - (fail_stack).avail) /* Pops what PUSH_FAIL_STACK pushes. We restore into the parameters, all of which should be lvalues: STR -- the saved data position. PAT -- the saved pattern position. LOW_REG, HIGH_REG -- the highest and lowest active registers. REGSTART, REGEND -- arrays of string positions. REG_INFO -- array of information about each subexpression. Also assumes the variables `fail_stack' and (if debugging), `bufp', `pend', `string1', `size1', `string2', and `size2'. */ #define POP_FAILURE_POINT(str, pat, low_reg, high_reg, regstart, regend, reg_info)\ { \ DEBUG_STATEMENT (fail_stack_elt_t failure_id;) \ unsigned long this_reg; \ unsigned char *string_temp; \ \ assert (!FAIL_STACK_EMPTY ()); \ \ /* Remove failure points and point to how many regs pushed. */ \ DEBUG_PRINT1 ("POP_FAILURE_POINT:\n"); \ DEBUG_PRINT2 (" Before pop, next avail: %d\n", fail_stack.avail); \ DEBUG_PRINT2 (" size: %d\n", fail_stack.size); \ \ assert (fail_stack.avail >= NUM_NONREG_ITEMS); \ \ DEBUG_POP (&failure_id); \ DEBUG_PRINT2 (" Popping failure id: %u\n", failure_id); \ \ /* If the saved string location is NULL, it came from an \ on_failure_keep_string_jump opcode, and we want to throw away the \ saved NULL, thus retaining our current position in the string. */ \ string_temp = POP_FAILURE_ITEM (); \ if (string_temp != NULL) \ str = (char *) string_temp; \ \ DEBUG_PRINT2 (" Popping string 0x%x: `", str); \ DEBUG_PRINT_DOUBLE_STRING (str, string1, size1, string2, size2); \ DEBUG_PRINT1 ("'\n"); \ \ pat = (unsigned char *) POP_FAILURE_ITEM (); \ DEBUG_PRINT2 (" Popping pattern 0x%x: ", pat); \ DEBUG_PRINT_COMPILED_PATTERN (bufp, pat, pend); \ \ /* Restore register info. */ \ high_reg = (unsigned long) POP_FAILURE_ITEM (); \ DEBUG_PRINT2 (" Popping high active reg: %u\n", high_reg); \ \ low_reg = (unsigned long) POP_FAILURE_ITEM (); \ DEBUG_PRINT2 (" Popping low active reg: %u\n", low_reg); \ \ for (this_reg = high_reg; this_reg >= low_reg; this_reg--) \ { \ DEBUG_PRINT2 (" Popping reg: %u\n", this_reg); \ \ reg_info[this_reg].word = POP_FAILURE_ITEM (); \ DEBUG_PRINT2 (" info: 0x%x\n", reg_info[this_reg]); \ \ regend[this_reg] = (char *) POP_FAILURE_ITEM (); \ DEBUG_PRINT2 (" end: 0x%x\n", regend[this_reg]); \ \ regstart[this_reg] = (char *) POP_FAILURE_ITEM (); \ DEBUG_PRINT2 (" start: 0x%x\n", regstart[this_reg]); \ } \ \ DEBUG_STATEMENT (nfailure_points_popped++); \ } /* POP_FAILURE_POINT */ /* re_compile_fastmap computes a ``fastmap'' for the compiled pattern in BUFP. A fastmap records which of the (1 << BYTEWIDTH) possible characters can start a string that matches the pattern. This fastmap is used by re_search to skip quickly over impossible starting points. The caller must supply the address of a (1 << BYTEWIDTH)-byte data area as BUFP->fastmap. We set the `fastmap', `fastmap_accurate', and `can_be_null' fields in the pattern buffer. Returns 0 if we succeed, -2 if an internal error. */ int re_compile_fastmap (bufp) struct re_pattern_buffer *bufp; { int j, k; fail_stack_type fail_stack; #ifndef REGEX_MALLOC char *destination; #endif /* We don't push any register information onto the failure stack. */ unsigned num_regs = 0; register char *fastmap = bufp->fastmap; unsigned char *pattern = bufp->buffer; unsigned long size = bufp->used; unsigned char *p = pattern; register unsigned char *pend = pattern + size; /* Assume that each path through the pattern can be null until proven otherwise. We set this false at the bottom of switch statement, to which we get only if a particular path doesn't match the empty string. */ boolean path_can_be_null = true; /* We aren't doing a `succeed_n' to begin with. */ boolean succeed_n_p = false; assert (fastmap != NULL && p != NULL); INIT_FAIL_STACK (); bzero (fastmap, 1 << BYTEWIDTH); /* Assume nothing's valid. */ bufp->fastmap_accurate = 1; /* It will be when we're done. */ bufp->can_be_null = 0; while (p != pend || !FAIL_STACK_EMPTY ()) { if (p == pend) { bufp->can_be_null |= path_can_be_null; /* Reset for next path. */ path_can_be_null = true; p = fail_stack.stack[--fail_stack.avail]; } /* We should never be about to go beyond the end of the pattern. */ assert (p < pend); #ifdef SWITCH_ENUM_BUG switch ((int) ((re_opcode_t) *p++)) #else switch ((re_opcode_t) *p++) #endif { /* I guess the idea here is to simply not bother with a fastmap if a backreference is used, since it's too hard to figure out the fastmap for the corresponding group. Setting `can_be_null' stops `re_search_2' from using the fastmap, so that is all we do. */ case duplicate: bufp->can_be_null = 1; return 0; /* Following are the cases which match a character. These end with `break'. */ case exactn: fastmap[p[1]] = 1; break; case charset: for (j = *p++ * BYTEWIDTH - 1; j >= 0; j--) if (p[j / BYTEWIDTH] & (1 << (j % BYTEWIDTH))) fastmap[j] = 1; break; case charset_not: /* Chars beyond end of map must be allowed. */ for (j = *p * BYTEWIDTH; j < (1 << BYTEWIDTH); j++) fastmap[j] = 1; for (j = *p++ * BYTEWIDTH - 1; j >= 0; j--) if (!(p[j / BYTEWIDTH] & (1 << (j % BYTEWIDTH)))) fastmap[j] = 1; break; case wordchar: for (j = 0; j < (1 << BYTEWIDTH); j++) if (SYNTAX (j) == Sword) fastmap[j] = 1; break; case notwordchar: for (j = 0; j < (1 << BYTEWIDTH); j++) if (SYNTAX (j) != Sword) fastmap[j] = 1; break; case anychar: /* `.' matches anything ... */ for (j = 0; j < (1 << BYTEWIDTH); j++) fastmap[j] = 1; /* ... except perhaps newline. */ if (!(bufp->syntax & RE_DOT_NEWLINE)) fastmap['\n'] = 0; /* Return if we have already set `can_be_null'; if we have, then the fastmap is irrelevant. Something's wrong here. */ else if (bufp->can_be_null) return 0; /* Otherwise, have to check alternative paths. */ break; #ifdef emacs case syntaxspec: k = *p++; for (j = 0; j < (1 << BYTEWIDTH); j++) if (SYNTAX (j) == (enum syntaxcode) k) fastmap[j] = 1; break; case notsyntaxspec: k = *p++; for (j = 0; j < (1 << BYTEWIDTH); j++) if (SYNTAX (j) != (enum syntaxcode) k) fastmap[j] = 1; break; /* All cases after this match the empty string. These end with `continue'. */ case before_dot: case at_dot: case after_dot: continue; #endif /* not emacs */ case no_op: case begline: case endline: case begbuf: case endbuf: case wordbound: case notwordbound: case wordbeg: case wordend: case push_dummy_failure: continue; case jump_n: case pop_failure_jump: case maybe_pop_jump: case jump: case jump_past_alt: case dummy_failure_jump: EXTRACT_NUMBER_AND_INCR (j, p); p += j; if (j > 0) continue; /* Jump backward implies we just went through the body of a loop and matched nothing. Opcode jumped to should be `on_failure_jump' or `succeed_n'. Just treat it like an ordinary jump. For a * loop, it has pushed its failure point already; if so, discard that as redundant. */ if ((re_opcode_t) *p != on_failure_jump && (re_opcode_t) *p != succeed_n) continue; p++; EXTRACT_NUMBER_AND_INCR (j, p); p += j; /* If what's on the stack is where we are now, pop it. */ if (!FAIL_STACK_EMPTY () && fail_stack.stack[fail_stack.avail - 1] == p) fail_stack.avail--; continue; case on_failure_jump: case on_failure_keep_string_jump: handle_on_failure_jump: EXTRACT_NUMBER_AND_INCR (j, p); /* For some patterns, e.g., `(a?)?', `p+j' here points to the end of the pattern. We don't want to push such a point, since when we restore it above, entering the switch will increment `p' past the end of the pattern. We don't need to push such a point since we obviously won't find any more fastmap entries beyond `pend'. Such a pattern can match the null string, though. */ if (p + j < pend) { if (!PUSH_PATTERN_OP (p + j, fail_stack)) return -2; } else bufp->can_be_null = 1; if (succeed_n_p) { EXTRACT_NUMBER_AND_INCR (k, p); /* Skip the n. */ succeed_n_p = false; } continue; case succeed_n: /* Get to the number of times to succeed. */ p += 2; /* Increment p past the n for when k != 0. */ EXTRACT_NUMBER_AND_INCR (k, p); if (k == 0) { p -= 4; succeed_n_p = true; /* Spaghetti code alert. */ goto handle_on_failure_jump; } continue; case set_number_at: p += 4; continue; case start_memory: case stop_memory: p += 2; continue; default: abort (); /* We have listed all the cases. */ } /* switch *p++ */ /* Getting here means we have found the possible starting characters for one path of the pattern -- and that the empty string does not match. We need not follow this path further. Instead, look at the next alternative (remembered on the stack), or quit if no more. The test at the top of the loop does these things. */ path_can_be_null = false; p = pend; } /* while p */ /* Set `can_be_null' for the last path (also the first path, if the pattern is empty). */ bufp->can_be_null |= path_can_be_null; return 0; } /* re_compile_fastmap */ /* Set REGS to hold NUM_REGS registers, storing them in STARTS and ENDS. Subsequent matches using PATTERN_BUFFER and REGS will use this memory for recording register information. STARTS and ENDS must be allocated using the malloc library routine, and must each be at least NUM_REGS * sizeof (regoff_t) bytes long. If NUM_REGS == 0, then subsequent matches should allocate their own register data. Unless this function is called, the first search or match using PATTERN_BUFFER will allocate its own register data, without freeing the old data. */ void re_set_registers (bufp, regs, num_regs, starts, ends) struct re_pattern_buffer *bufp; struct re_registers *regs; unsigned num_regs; regoff_t *starts, *ends; { if (num_regs) { bufp->regs_allocated = REGS_REALLOCATE; regs->num_regs = num_regs; regs->start = starts; regs->end = ends; } else { bufp->regs_allocated = REGS_UNALLOCATED; regs->num_regs = 0; regs->start = regs->end = (regoff_t) 0; } } /* Searching routines. */ /* Like re_search_2, below, but only one string is specified, and doesn't let you say where to stop matching. */ int re_search (bufp, string, size, startpos, range, regs) struct re_pattern_buffer *bufp; char *string; int size, startpos, range; struct re_registers *regs; { return re_search_2 (bufp, NULL, 0, string, size, startpos, range, regs, size); } /* Using the compiled pattern in BUFP->buffer, first tries to match the virtual concatenation of STRING1 and STRING2, starting first at index STARTPOS, then at STARTPOS + 1, and so on. STRING1 and STRING2 have length SIZE1 and SIZE2, respectively. RANGE is how far to scan while trying to match. RANGE = 0 means try only at STARTPOS; in general, the last start tried is STARTPOS + RANGE. In REGS, return the indices of the virtual concatenation of STRING1 and STRING2 that matched the entire BUFP->buffer and its contained subexpressions. Do not consider matching one past the index STOP in the virtual concatenation of STRING1 and STRING2. We return either the position in the strings at which the match was found, -1 if no match, or -2 if error (such as failure stack overflow). */ int re_search_2 (bufp, string1, size1, string2, size2, startpos, range, regs, stop) struct re_pattern_buffer *bufp; char *string1, *string2; int size1, size2; int startpos; int range; struct re_registers *regs; int stop; { int val; register char *fastmap = bufp->fastmap; register char *translate = bufp->translate; int total_size = size1 + size2; int endpos = startpos + range; /* Check for out-of-range STARTPOS. */ if (startpos < 0 || startpos > total_size) return -1; /* Fix up RANGE if it might eventually take us outside the virtual concatenation of STRING1 and STRING2. */ if (endpos < -1) range = -1 - startpos; else if (endpos > total_size) range = total_size - startpos; /* If the search isn't to be a backwards one, don't waste time in a search for a pattern that must be anchored. */ if (bufp->used > 0 && (re_opcode_t) bufp->buffer[0] == begbuf && range > 0) { if (startpos > 0) return -1; else range = 1; } /* Update the fastmap now if not correct already. */ if (fastmap && !bufp->fastmap_accurate) if (re_compile_fastmap (bufp) == -2) return -2; /* Loop through the string, looking for a place to start matching. */ for (;;) { /* If a fastmap is supplied, skip quickly over characters that cannot be the start of a match. If the pattern can match the null string, however, we don't need to skip characters; we want the first null string. */ if (fastmap && startpos < total_size && !bufp->can_be_null) { if (range > 0) /* Searching forwards. */ { register char *d; register int lim = 0; int irange = range; if (startpos < size1 && startpos + range >= size1) lim = range - (size1 - startpos); d = (startpos >= size1 ? string2 - size1 : string1) + startpos; /* Written out as an if-else to avoid testing `translate' inside the loop. */ if (translate) while (range > lim && !fastmap[(unsigned char) translate[(unsigned char) *d++]]) range--; else while (range > lim && !fastmap[(unsigned char) *d++]) range--; startpos += irange - range; } else /* Searching backwards. */ { register char c = (size1 == 0 || startpos >= size1 ? string2[startpos - size1] : string1[startpos]); if (!fastmap[(unsigned char) TRANSLATE (c)]) goto advance; } } /* If can't match the null string, and that's all we have left, fail. */ if (range >= 0 && startpos == total_size && fastmap && !bufp->can_be_null) return -1; val = re_match_2 (bufp, string1, size1, string2, size2, startpos, regs, stop); if (val >= 0) return startpos; if (val == -2) return -2; advance: if (!range) break; else if (range > 0) { range--; startpos++; } else { range++; startpos--; } } return -1; } /* re_search_2 */ /* Declarations and macros for re_match_2. */ static int bcmp_translate (); static boolean alt_match_null_string_p (), common_op_match_null_string_p (), group_match_null_string_p (); /* Structure for per-register (a.k.a. per-group) information. This must not be longer than one word, because we push this value onto the failure stack. Other register information, such as the starting and ending positions (which are addresses), and the list of inner groups (which is a bits list) are maintained in separate variables. We are making a (strictly speaking) nonportable assumption here: that the compiler will pack our bit fields into something that fits into the type of `word', i.e., is something that fits into one item on the failure stack. */ typedef union { fail_stack_elt_t word; struct { /* This field is one if this group can match the empty string, zero if not. If not yet determined, `MATCH_NULL_UNSET_VALUE'. */ #define MATCH_NULL_UNSET_VALUE 3 unsigned match_null_string_p : 2; unsigned is_active : 1; unsigned matched_something : 1; unsigned ever_matched_something : 1; } bits; } register_info_type; #define REG_MATCH_NULL_STRING_P(R) ((R).bits.match_null_string_p) #define IS_ACTIVE(R) ((R).bits.is_active) #define MATCHED_SOMETHING(R) ((R).bits.matched_something) #define EVER_MATCHED_SOMETHING(R) ((R).bits.ever_matched_something) /* Call this when have matched a real character; it sets `matched' flags for the subexpressions which we are currently inside. Also records that those subexprs have matched. */ #define SET_REGS_MATCHED() \ do \ { \ unsigned r; \ for (r = lowest_active_reg; r <= highest_active_reg; r++) \ { \ MATCHED_SOMETHING (reg_info[r]) \ = EVER_MATCHED_SOMETHING (reg_info[r]) \ = 1; \ } \ } \ while (0) /* This converts PTR, a pointer into one of the search strings `string1' and `string2' into an offset from the beginning of that string. */ #define POINTER_TO_OFFSET(ptr) \ (FIRST_STRING_P (ptr) ? (ptr) - string1 : (ptr) - string2 + size1) /* Registers are set to a sentinel when they haven't yet matched. */ #define REG_UNSET_VALUE ((char *) -1) #define REG_UNSET(e) ((e) == REG_UNSET_VALUE) /* Macros for dealing with the split strings in re_match_2. */ #define MATCHING_IN_FIRST_STRING (dend == end_match_1) /* Call before fetching a character with *d. This switches over to string2 if necessary. */ #define PREFETCH() \ while (d == dend) \ { \ /* End of string2 => fail. */ \ if (dend == end_match_2) \ goto fail; \ /* End of string1 => advance to string2. */ \ d = string2; \ dend = end_match_2; \ } /* Test if at very beginning or at very end of the virtual concatenation of `string1' and `string2'. If only one string, it's `string2'. */ #define AT_STRINGS_BEG(d) ((d) == (size1 ? string1 : string2) || !size2) #define AT_STRINGS_END(d) ((d) == end2) /* Test if D points to a character which is word-constituent. We have two special cases to check for: if past the end of string1, look at the first character in string2; and if before the beginning of string2, look at the last character in string1. */ #define WORDCHAR_P(d) \ (SYNTAX ((d) == end1 ? *string2 \ : (d) == string2 - 1 ? *(end1 - 1) : *(d)) \ == Sword) /* Test if the character before D and the one at D differ with respect to being word-constituent. */ #define AT_WORD_BOUNDARY(d) \ (AT_STRINGS_BEG (d) || AT_STRINGS_END (d) \ || WORDCHAR_P (d - 1) != WORDCHAR_P (d)) /* Free everything we malloc. */ #ifdef REGEX_MALLOC #define FREE_VAR(var) if (var) free (var); var = NULL #define FREE_VARIABLES() \ do { \ FREE_VAR (fail_stack.stack); \ FREE_VAR (regstart); \ FREE_VAR (regend); \ FREE_VAR (old_regstart); \ FREE_VAR (old_regend); \ FREE_VAR (best_regstart); \ FREE_VAR (best_regend); \ FREE_VAR (reg_info); \ FREE_VAR (reg_dummy); \ FREE_VAR (reg_info_dummy); \ } while (0) #else /* not REGEX_MALLOC */ /* Some MIPS systems (at least) want this to free alloca'd storage. */ #define FREE_VARIABLES() alloca (0) #endif /* not REGEX_MALLOC */ /* These values must meet several constraints. They must not be valid register values; since we have a limit of 255 registers (because we use only one byte in the pattern for the register number), we can use numbers larger than 255. They must differ by 1, because of NUM_FAILURE_ITEMS above. And the value for the lowest register must be larger than the value for the highest register, so we do not try to actually save any registers when none are active. */ #define NO_HIGHEST_ACTIVE_REG (1 << BYTEWIDTH) #define NO_LOWEST_ACTIVE_REG (NO_HIGHEST_ACTIVE_REG + 1) /* Matching routines. */ #ifndef emacs /* Emacs never uses this. */ /* re_match is like re_match_2 except it takes only a single string. */ int re_match (bufp, string, size, pos, regs) struct re_pattern_buffer *bufp; char *string; int size, pos; struct re_registers *regs; { return re_match_2 (bufp, NULL, 0, string, size, pos, regs, size); } #endif /* not emacs */ /* re_match_2 matches the compiled pattern in BUFP against the the (virtual) concatenation of STRING1 and STRING2 (of length SIZE1 and SIZE2, respectively). We start matching at POS, and stop matching at STOP. If REGS is non-null and the `no_sub' field of BUFP is nonzero, we store offsets for the substring each group matched in REGS. See the documentation for exactly how many groups we fill. We return -1 if no match, -2 if an internal error (such as the failure stack overflowing). Otherwise, we return the length of the matched substring. */ int re_match_2 (bufp, string1, size1, string2, size2, pos, regs, stop) struct re_pattern_buffer *bufp; char *string1, *string2; int size1, size2; int pos; struct re_registers *regs; int stop; { /* General temporaries. */ int mcnt; unsigned char *p1; /* Just past the end of the corresponding string. */ char *end1, *end2; /* Pointers into string1 and string2, just past the last characters in each to consider matching. */ char *end_match_1, *end_match_2; /* Where we are in the data, and the end of the current string. */ char *d, *dend; /* Where we are in the pattern, and the end of the pattern. */ unsigned char *p = bufp->buffer; register unsigned char *pend = p + bufp->used; /* We use this to map every character in the string. */ char *translate = bufp->translate; /* Failure point stack. Each place that can handle a failure further down the line pushes a failure point on this stack. It consists of restart, regend, and reg_info for all registers corresponding to the subexpressions we're currently inside, plus the number of such registers, and, finally, two char *'s. The first char * is where to resume scanning the pattern; the second one is where to resume scanning the strings. If the latter is zero, the failure point is a ``dummy''; if a failure happens and the failure point is a dummy, it gets discarded and the next next one is tried. */ fail_stack_type fail_stack; #ifdef DEBUG static unsigned failure_id = 0; unsigned nfailure_points_pushed = 0, nfailure_points_popped = 0; #endif /* We fill all the registers internally, independent of what we return, for use in backreferences. The number here includes an element for register zero. */ unsigned num_regs = bufp->re_nsub + 1; /* The currently active registers. */ unsigned lowest_active_reg = NO_LOWEST_ACTIVE_REG; unsigned highest_active_reg = NO_HIGHEST_ACTIVE_REG; /* Information on the contents of registers. These are pointers into the input strings; they record just what was matched (on this attempt) by a subexpression part of the pattern, that is, the regnum-th regstart pointer points to where in the pattern we began matching and the regnum-th regend points to right after where we stopped matching the regnum-th subexpression. (The zeroth register keeps track of what the whole pattern matches.) */ char **regstart, **regend; /* If a group that's operated upon by a repetition operator fails to match anything, then the register for its start will need to be restored because it will have been set to wherever in the string we are when we last see its open-group operator. Similarly for a register's end. */ char **old_regstart, **old_regend; /* The is_active field of reg_info helps us keep track of which (possibly nested) subexpressions we are currently in. The matched_something field of reg_info[reg_num] helps us tell whether or not we have matched any of the pattern so far this time through the reg_num-th subexpression. These two fields get reset each time through any loop their register is in. */ register_info_type *reg_info; /* The following record the register info as found in the above variables when we find a match better than any we've seen before. This happens as we backtrack through the failure points, which in turn happens only if we have not yet matched the entire string. */ unsigned best_regs_set = false; char **best_regstart, **best_regend; /* Logically, this is `best_regend[0]'. But we don't want to have to allocate space for that if we're not allocating space for anything else (see below). Also, we never need info about register 0 for any of the other register vectors, and it seems rather a kludge to treat `best_regend' differently than the rest. So we keep track of the end of the best match so far in a separate variable. We initialize this to NULL so that when we backtrack the first time and need to test it, it's not garbage. */ char *match_end = NULL; /* Used when we pop values we don't care about. */ char **reg_dummy; register_info_type *reg_info_dummy; #ifdef DEBUG /* Counts the total number of registers pushed. */ unsigned num_regs_pushed = 0; #endif DEBUG_PRINT1 ("\n\nEntering re_match_2.\n"); INIT_FAIL_STACK (); /* Do not bother to initialize all the register variables if there are no groups in the pattern, as it takes a fair amount of time. If there are groups, we include space for register 0 (the whole pattern), even though we never use it, since it simplifies the array indexing. We should fix this. */ if (bufp->re_nsub) { regstart = REGEX_TALLOC (num_regs, char *); regend = REGEX_TALLOC (num_regs, char *); old_regstart = REGEX_TALLOC (num_regs, char *); old_regend = REGEX_TALLOC (num_regs, char *); best_regstart = REGEX_TALLOC (num_regs, char *); best_regend = REGEX_TALLOC (num_regs, char *); reg_info = REGEX_TALLOC (num_regs, register_info_type); reg_dummy = REGEX_TALLOC (num_regs, char *); reg_info_dummy = REGEX_TALLOC (num_regs, register_info_type); if (!(regstart && regend && old_regstart && old_regend && reg_info && best_regstart && best_regend && reg_dummy && reg_info_dummy)) { FREE_VARIABLES (); return -2; } } #ifdef REGEX_MALLOC else { /* We must initialize all our variables to NULL, so that `FREE_VARIABLES' doesn't try to free them. */ regstart = regend = old_regstart = old_regend = best_regstart = best_regend = reg_dummy = NULL; reg_info = reg_info_dummy = (register_info_type *) NULL; } #endif /* REGEX_MALLOC */ /* The starting position is bogus. */ if (pos < 0 || pos > size1 + size2) { FREE_VARIABLES (); return -1; } /* Initialize subexpression text positions to -1 to mark ones that no start_memory/stop_memory has been seen for. Also initialize the register information struct. */ for (mcnt = 1; mcnt < num_regs; mcnt++) { regstart[mcnt] = regend[mcnt] = old_regstart[mcnt] = old_regend[mcnt] = REG_UNSET_VALUE; REG_MATCH_NULL_STRING_P (reg_info[mcnt]) = MATCH_NULL_UNSET_VALUE; IS_ACTIVE (reg_info[mcnt]) = 0; MATCHED_SOMETHING (reg_info[mcnt]) = 0; EVER_MATCHED_SOMETHING (reg_info[mcnt]) = 0; } /* We move `string1' into `string2' if the latter's empty -- but not if `string1' is null. */ if (size2 == 0 && string1 != NULL) { string2 = string1; size2 = size1; string1 = 0; size1 = 0; } end1 = string1 + size1; end2 = string2 + size2; /* Compute where to stop matching, within the two strings. */ if (stop <= size1) { end_match_1 = string1 + stop; end_match_2 = string2; } else { end_match_1 = end1; end_match_2 = string2 + stop - size1; } /* `p' scans through the pattern as `d' scans through the data. `dend' is the end of the input string that `d' points within. `d' is advanced into the following input string whenever necessary, but this happens before fetching; therefore, at the beginning of the loop, `d' can be pointing at the end of a string, but it cannot equal `string2'. */ if (size1 > 0 && pos <= size1) { d = string1 + pos; dend = end_match_1; } else { d = string2 + pos - size1; dend = end_match_2; } DEBUG_PRINT1 ("The compiled pattern is: "); DEBUG_PRINT_COMPILED_PATTERN (bufp, p, pend); DEBUG_PRINT1 ("The string to match is: `"); DEBUG_PRINT_DOUBLE_STRING (d, string1, size1, string2, size2); DEBUG_PRINT1 ("'\n"); /* This loops over pattern commands. It exits by returning from the function if the match is complete, or it drops through if the match fails at this starting point in the input data. */ for (;;) { DEBUG_PRINT2 ("\n0x%x: ", p); if (p == pend) { /* End of pattern means we might have succeeded. */ DEBUG_PRINT1 ("end of pattern ... "); /* If we haven't matched the entire string, and we want the longest match, try backtracking. */ if (d != end_match_2) { DEBUG_PRINT1 ("backtracking.\n"); if (!FAIL_STACK_EMPTY ()) { /* More failure points to try. */ boolean same_str_p = (FIRST_STRING_P (match_end) == MATCHING_IN_FIRST_STRING); /* If exceeds best match so far, save it. */ if (!best_regs_set || (same_str_p && d > match_end) || (!same_str_p && !MATCHING_IN_FIRST_STRING)) { best_regs_set = true; match_end = d; DEBUG_PRINT1 ("\nSAVING match as best so far.\n"); for (mcnt = 1; mcnt < num_regs; mcnt++) { best_regstart[mcnt] = regstart[mcnt]; best_regend[mcnt] = regend[mcnt]; } } goto fail; } /* If no failure points, don't restore garbage. */ else if (best_regs_set) { restore_best_regs: /* Restore best match. It may happen that `dend == end_match_1' while the restored d is in string2. For example, the pattern `x.*y.*z' against the strings `x-' and `y-z-', if the two strings are not consecutive in memory. */ DEBUG_PRINT1 ("Restoring best registers.\n"); d = match_end; dend = ((d >= string1 && d <= end1) ? end_match_1 : end_match_2); for (mcnt = 1; mcnt < num_regs; mcnt++) { regstart[mcnt] = best_regstart[mcnt]; regend[mcnt] = best_regend[mcnt]; } } } /* d != end_match_2 */ DEBUG_PRINT1 ("Accepting match.\n"); /* If caller wants register contents data back, do it. */ if (regs && !bufp->no_sub) { /* Have the register data arrays been allocated? */ if (bufp->regs_allocated == REGS_UNALLOCATED) { /* No. So allocate them with malloc. We need one extra element beyond `num_regs' for the `-1' marker GNU code uses. */ regs->num_regs = MAX (RE_NREGS, num_regs + 1); regs->start = TALLOC (regs->num_regs, regoff_t); regs->end = TALLOC (regs->num_regs, regoff_t); if (regs->start == NULL || regs->end == NULL) return -2; bufp->regs_allocated = REGS_REALLOCATE; } else if (bufp->regs_allocated == REGS_REALLOCATE) { /* Yes. If we need more elements than were already allocated, reallocate them. If we need fewer, just leave it alone. */ if (regs->num_regs < num_regs + 1) { regs->num_regs = num_regs + 1; RETALLOC (regs->start, regs->num_regs, regoff_t); RETALLOC (regs->end, regs->num_regs, regoff_t); if (regs->start == NULL || regs->end == NULL) return -2; } } else assert (bufp->regs_allocated == REGS_FIXED); /* Convert the pointer data in `regstart' and `regend' to indices. Register zero has to be set differently, since we haven't kept track of any info for it. */ if (regs->num_regs > 0) { regs->start[0] = pos; regs->end[0] = (MATCHING_IN_FIRST_STRING ? d - string1 : d - string2 + size1); } /* Go through the first `min (num_regs, regs->num_regs)' registers, since that is all we initialized. */ for (mcnt = 1; mcnt < MIN (num_regs, regs->num_regs); mcnt++) { if (REG_UNSET (regstart[mcnt]) || REG_UNSET (regend[mcnt])) regs->start[mcnt] = regs->end[mcnt] = -1; else { regs->start[mcnt] = POINTER_TO_OFFSET (regstart[mcnt]); regs->end[mcnt] = POINTER_TO_OFFSET (regend[mcnt]); } } /* If the regs structure we return has more elements than were in the pattern, set the extra elements to -1. If we (re)allocated the registers, this is the case, because we always allocate enough to have at least one -1 at the end. */ for (mcnt = num_regs; mcnt < regs->num_regs; mcnt++) regs->start[mcnt] = regs->end[mcnt] = -1; } /* regs && !bufp->no_sub */ FREE_VARIABLES (); DEBUG_PRINT4 ("%u failure points pushed, %u popped (%u remain).\n", nfailure_points_pushed, nfailure_points_popped, nfailure_points_pushed - nfailure_points_popped); DEBUG_PRINT2 ("%u registers pushed.\n", num_regs_pushed); mcnt = d - pos - (MATCHING_IN_FIRST_STRING ? string1 : string2 - size1); DEBUG_PRINT2 ("Returning %d from re_match_2.\n", mcnt); return mcnt; } /* Otherwise match next pattern command. */ #ifdef SWITCH_ENUM_BUG switch ((int) ((re_opcode_t) *p++)) #else switch ((re_opcode_t) *p++) #endif { /* Ignore these. Used to ignore the n of succeed_n's which currently have n == 0. */ case no_op: DEBUG_PRINT1 ("EXECUTING no_op.\n"); break; /* Match the next n pattern characters exactly. The following byte in the pattern defines n, and the n bytes after that are the characters to match. */ case exactn: mcnt = *p++; DEBUG_PRINT2 ("EXECUTING exactn %d.\n", mcnt); /* This is written out as an if-else so we don't waste time testing `translate' inside the loop. */ if (translate) { do { PREFETCH (); if (translate[(unsigned char) *d++] != (char) *p++) goto fail; } while (--mcnt); } else { do { PREFETCH (); if (*d++ != (char) *p++) goto fail; } while (--mcnt); } SET_REGS_MATCHED (); break; /* Match any character except possibly a newline or a null. */ case anychar: DEBUG_PRINT1 ("EXECUTING anychar.\n"); PREFETCH (); if ((!(bufp->syntax & RE_DOT_NEWLINE) && TRANSLATE (*d) == '\n') || (bufp->syntax & RE_DOT_NOT_NULL && TRANSLATE (*d) == '\000')) goto fail; SET_REGS_MATCHED (); DEBUG_PRINT2 (" Matched `%d'.\n", *d); d++; break; case charset: case charset_not: { register unsigned char c; boolean not = (re_opcode_t) *(p - 1) == charset_not; DEBUG_PRINT2 ("EXECUTING charset%s.\n", not ? "_not" : ""); PREFETCH (); c = TRANSLATE (*d); /* The character to match. */ /* Cast to `unsigned' instead of `unsigned char' in case the bit list is a full 32 bytes long. */ if (c < (unsigned) (*p * BYTEWIDTH) && p[1 + c / BYTEWIDTH] & (1 << (c % BYTEWIDTH))) not = !not; p += 1 + *p; if (!not) goto fail; SET_REGS_MATCHED (); d++; break; } /* The beginning of a group is represented by start_memory. The arguments are the register number in the next byte, and the number of groups inner to this one in the next. The text matched within the group is recorded (in the internal registers data structure) under the register number. */ case start_memory: DEBUG_PRINT3 ("EXECUTING start_memory %d (%d):\n", *p, p[1]); /* Find out if this group can match the empty string. */ p1 = p; /* To send to group_match_null_string_p. */ if (REG_MATCH_NULL_STRING_P (reg_info[*p]) == MATCH_NULL_UNSET_VALUE) REG_MATCH_NULL_STRING_P (reg_info[*p]) = group_match_null_string_p (&p1, pend, reg_info); /* Save the position in the string where we were the last time we were at this open-group operator in case the group is operated upon by a repetition operator, e.g., with `(a*)*b' against `ab'; then we want to ignore where we are now in the string in case this attempt to match fails. */ old_regstart[*p] = REG_MATCH_NULL_STRING_P (reg_info[*p]) ? REG_UNSET (regstart[*p]) ? d : regstart[*p] : regstart[*p]; DEBUG_PRINT2 (" old_regstart: %d\n", POINTER_TO_OFFSET (old_regstart[*p])); regstart[*p] = d; DEBUG_PRINT2 (" regstart: %d\n", POINTER_TO_OFFSET (regstart[*p])); IS_ACTIVE (reg_info[*p]) = 1; MATCHED_SOMETHING (reg_info[*p]) = 0; /* This is the new highest active register. */ highest_active_reg = *p; /* If nothing was active before, this is the new lowest active register. */ if (lowest_active_reg == NO_LOWEST_ACTIVE_REG) lowest_active_reg = *p; /* Move past the register number and inner group count. */ p += 2; break; /* The stop_memory opcode represents the end of a group. Its arguments are the same as start_memory's: the register number, and the number of inner groups. */ case stop_memory: DEBUG_PRINT3 ("EXECUTING stop_memory %d (%d):\n", *p, p[1]); /* We need to save the string position the last time we were at this close-group operator in case the group is operated upon by a repetition operator, e.g., with `((a*)*(b*)*)*' against `aba'; then we want to ignore where we are now in the string in case this attempt to match fails. */ old_regend[*p] = REG_MATCH_NULL_STRING_P (reg_info[*p]) ? REG_UNSET (regend[*p]) ? d : regend[*p] : regend[*p]; DEBUG_PRINT2 (" old_regend: %d\n", POINTER_TO_OFFSET (old_regend[*p])); regend[*p] = d; DEBUG_PRINT2 (" regend: %d\n", POINTER_TO_OFFSET (regend[*p])); /* This register isn't active anymore. */ IS_ACTIVE (reg_info[*p]) = 0; /* If this was the only register active, nothing is active anymore. */ if (lowest_active_reg == highest_active_reg) { lowest_active_reg = NO_LOWEST_ACTIVE_REG; highest_active_reg = NO_HIGHEST_ACTIVE_REG; } else { /* We must scan for the new highest active register, since it isn't necessarily one less than now: consider (a(b)c(d(e)f)g). When group 3 ends, after the f), the new highest active register is 1. */ unsigned char r = *p - 1; while (r > 0 && !IS_ACTIVE (reg_info[r])) r--; /* If we end up at register zero, that means that we saved the registers as the result of an `on_failure_jump', not a `start_memory', and we jumped to past the innermost `stop_memory'. For example, in ((.)*) we save registers 1 and 2 as a result of the *, but when we pop back to the second ), we are at the stop_memory 1. Thus, nothing is active. */ if (r == 0) { lowest_active_reg = NO_LOWEST_ACTIVE_REG; highest_active_reg = NO_HIGHEST_ACTIVE_REG; } else highest_active_reg = r; } /* If just failed to match something this time around with a group that's operated on by a repetition operator, try to force exit from the ``loop'', and restore the register information for this group that we had before trying this last match. */ if ((!MATCHED_SOMETHING (reg_info[*p]) || (re_opcode_t) p[-3] == start_memory) && (p + 2) < pend) { boolean is_a_jump_n = false; p1 = p + 2; mcnt = 0; switch ((re_opcode_t) *p1++) { case jump_n: is_a_jump_n = true; case pop_failure_jump: case maybe_pop_jump: case jump: case dummy_failure_jump: EXTRACT_NUMBER_AND_INCR (mcnt, p1); if (is_a_jump_n) p1 += 2; break; default: /* do nothing */ ; } p1 += mcnt; /* If the next operation is a jump backwards in the pattern to an on_failure_jump right before the start_memory corresponding to this stop_memory, exit from the loop by forcing a failure after pushing on the stack the on_failure_jump's jump in the pattern, and d. */ if (mcnt < 0 && (re_opcode_t) *p1 == on_failure_jump && (re_opcode_t) p1[3] == start_memory && p1[4] == *p) { /* If this group ever matched anything, then restore what its registers were before trying this last failed match, e.g., with `(a*)*b' against `ab' for regstart[1], and, e.g., with `((a*)*(b*)*)*' against `aba' for regend[3]. Also restore the registers for inner groups for, e.g., `((a*)(b*))*' against `aba' (register 3 would otherwise get trashed). */ if (EVER_MATCHED_SOMETHING (reg_info[*p])) { unsigned r; EVER_MATCHED_SOMETHING (reg_info[*p]) = 0; /* Restore this and inner groups' (if any) registers. */ for (r = *p; r < *p + *(p + 1); r++) { regstart[r] = old_regstart[r]; /* xx why this test? */ if ((unsigned long) old_regend[r] >= (unsigned long) regstart[r]) regend[r] = old_regend[r]; } } p1++; EXTRACT_NUMBER_AND_INCR (mcnt, p1); PUSH_FAILURE_POINT (p1 + mcnt, d, -2); goto fail; } } /* Move past the register number and the inner group count. */ p += 2; break; /* \ has been turned into a `duplicate' command which is followed by the numeric value of as the register number. */ case duplicate: { register char *d2, *dend2; int regno = *p++; /* Get which register to match against. */ DEBUG_PRINT2 ("EXECUTING duplicate %d.\n", regno); /* Can't back reference a group which we've never matched. */ if (REG_UNSET (regstart[regno]) || REG_UNSET (regend[regno])) goto fail; /* Where in input to try to start matching. */ d2 = regstart[regno]; /* Where to stop matching; if both the place to start and the place to stop matching are in the same string, then set to the place to stop, otherwise, for now have to use the end of the first string. */ dend2 = ((FIRST_STRING_P (regstart[regno]) == FIRST_STRING_P (regend[regno])) ? regend[regno] : end_match_1); for (;;) { /* If necessary, advance to next segment in register contents. */ while (d2 == dend2) { if (dend2 == end_match_2) break; if (dend2 == regend[regno]) break; /* End of string1 => advance to string2. */ d2 = string2; dend2 = regend[regno]; } /* At end of register contents => success */ if (d2 == dend2) break; /* If necessary, advance to next segment in data. */ PREFETCH (); /* How many characters left in this segment to match. */ mcnt = dend - d; /* Want how many consecutive characters we can match in one shot, so, if necessary, adjust the count. */ if (mcnt > dend2 - d2) mcnt = dend2 - d2; /* Compare that many; failure if mismatch, else move past them. */ if (translate ? bcmp_translate (d, d2, mcnt, translate) : bcmp (d, d2, mcnt)) goto fail; d += mcnt, d2 += mcnt; } } break; /* begline matches the empty string at the beginning of the string (unless `not_bol' is set in `bufp'), and, if `newline_anchor' is set, after newlines. */ case begline: DEBUG_PRINT1 ("EXECUTING begline.\n"); if (AT_STRINGS_BEG (d)) { if (!bufp->not_bol) break; } else if (d[-1] == '\n' && bufp->newline_anchor) { break; } /* In all other cases, we fail. */ goto fail; /* endline is the dual of begline. */ case endline: DEBUG_PRINT1 ("EXECUTING endline.\n"); if (AT_STRINGS_END (d)) { if (!bufp->not_eol) break; } /* We have to ``prefetch'' the next character. */ else if ((d == end1 ? *string2 : *d) == '\n' && bufp->newline_anchor) { break; } goto fail; /* Match at the very beginning of the data. */ case begbuf: DEBUG_PRINT1 ("EXECUTING begbuf.\n"); if (AT_STRINGS_BEG (d)) break; goto fail; /* Match at the very end of the data. */ case endbuf: DEBUG_PRINT1 ("EXECUTING endbuf.\n"); if (AT_STRINGS_END (d)) break; goto fail; /* on_failure_keep_string_jump is used to optimize `.*\n'. It pushes NULL as the value for the string on the stack. Then `pop_failure_point' will keep the current value for the string, instead of restoring it. To see why, consider matching `foo\nbar' against `.*\n'. The .* matches the foo; then the . fails against the \n. But the next thing we want to do is match the \n against the \n; if we restored the string value, we would be back at the foo. Because this is used only in specific cases, we don't need to check all the things that `on_failure_jump' does, to make sure the right things get saved on the stack. Hence we don't share its code. The only reason to push anything on the stack at all is that otherwise we would have to change `anychar's code to do something besides goto fail in this case; that seems worse than this. */ case on_failure_keep_string_jump: DEBUG_PRINT1 ("EXECUTING on_failure_keep_string_jump"); EXTRACT_NUMBER_AND_INCR (mcnt, p); DEBUG_PRINT3 (" %d (to 0x%x):\n", mcnt, p + mcnt); PUSH_FAILURE_POINT (p + mcnt, NULL, -2); break; /* Uses of on_failure_jump: Each alternative starts with an on_failure_jump that points to the beginning of the next alternative. Each alternative except the last ends with a jump that in effect jumps past the rest of the alternatives. (They really jump to the ending jump of the following alternative, because tensioning these jumps is a hassle.) Repeats start with an on_failure_jump that points past both the repetition text and either the following jump or pop_failure_jump back to this on_failure_jump. */ case on_failure_jump: on_failure: DEBUG_PRINT1 ("EXECUTING on_failure_jump"); EXTRACT_NUMBER_AND_INCR (mcnt, p); DEBUG_PRINT3 (" %d (to 0x%x)", mcnt, p + mcnt); /* If this on_failure_jump comes right before a group (i.e., the original * applied to a group), save the information for that group and all inner ones, so that if we fail back to this point, the group's information will be correct. For example, in \(a*\)*\1, we need the preceding group, and in \(\(a*\)b*\)\2, we need the inner group. */ /* We can't use `p' to check ahead because we push a failure point to `p + mcnt' after we do this. */ p1 = p; /* We need to skip no_op's before we look for the start_memory in case this on_failure_jump is happening as the result of a completed succeed_n, as in \(a\)\{1,3\}b\1 against aba. */ while (p1 < pend && (re_opcode_t) *p1 == no_op) p1++; if (p1 < pend && (re_opcode_t) *p1 == start_memory) { /* We have a new highest active register now. This will get reset at the start_memory we are about to get to, but we will have saved all the registers relevant to this repetition op, as described above. */ highest_active_reg = *(p1 + 1) + *(p1 + 2); if (lowest_active_reg == NO_LOWEST_ACTIVE_REG) lowest_active_reg = *(p1 + 1); } DEBUG_PRINT1 (":\n"); PUSH_FAILURE_POINT (p + mcnt, d, -2); break; /* A smart repeat ends with `maybe_pop_jump'. We change it to either `pop_failure_jump' or `jump'. */ case maybe_pop_jump: EXTRACT_NUMBER_AND_INCR (mcnt, p); DEBUG_PRINT2 ("EXECUTING maybe_pop_jump %d.\n", mcnt); { register unsigned char *p2 = p; /* Compare the beginning of the repeat with what in the pattern follows its end. If we can establish that there is nothing that they would both match, i.e., that we would have to backtrack because of (as in, e.g., `a*a') then we can change to pop_failure_jump, because we'll never have to backtrack. This is not true in the case of alternatives: in `(a|ab)*' we do need to backtrack to the `ab' alternative (e.g., if the string was `ab'). But instead of trying to detect that here, the alternative has put on a dummy failure point which is what we will end up popping. */ /* Skip over open/close-group commands. */ while (p2 + 2 < pend && ((re_opcode_t) *p2 == stop_memory || (re_opcode_t) *p2 == start_memory)) p2 += 3; /* Skip over args, too. */ /* If we're at the end of the pattern, we can change. */ if (p2 == pend) { /* Consider what happens when matching ":\(.*\)" against ":/". I don't really understand this code yet. */ p[-3] = (unsigned char) pop_failure_jump; DEBUG_PRINT1 (" End of pattern: change to `pop_failure_jump'.\n"); } else if ((re_opcode_t) *p2 == exactn || (bufp->newline_anchor && (re_opcode_t) *p2 == endline)) { register unsigned char c = *p2 == (unsigned char) endline ? '\n' : p2[2]; p1 = p + mcnt; /* p1[0] ... p1[2] are the `on_failure_jump' corresponding to the `maybe_finalize_jump' of this case. Examine what follows. */ if ((re_opcode_t) p1[3] == exactn && p1[5] != c) { p[-3] = (unsigned char) pop_failure_jump; DEBUG_PRINT3 (" %c != %c => pop_failure_jump.\n", c, p1[5]); } else if ((re_opcode_t) p1[3] == charset || (re_opcode_t) p1[3] == charset_not) { int not = (re_opcode_t) p1[3] == charset_not; if (c < (unsigned char) (p1[4] * BYTEWIDTH) && p1[5 + c / BYTEWIDTH] & (1 << (c % BYTEWIDTH))) not = !not; /* `not' is equal to 1 if c would match, which means that we can't change to pop_failure_jump. */ if (!not) { p[-3] = (unsigned char) pop_failure_jump; DEBUG_PRINT1 (" No match => pop_failure_jump.\n"); } } } } p -= 2; /* Point at relative address again. */ if ((re_opcode_t) p[-1] != pop_failure_jump) { p[-1] = (unsigned char) jump; DEBUG_PRINT1 (" Match => jump.\n"); goto unconditional_jump; } /* Note fall through. */ /* The end of a simple repeat has a pop_failure_jump back to its matching on_failure_jump, where the latter will push a failure point. The pop_failure_jump takes off failure points put on by this pop_failure_jump's matching on_failure_jump; we got through the pattern to here from the matching on_failure_jump, so didn't fail. */ case pop_failure_jump: { /* We need to pass separate storage for the lowest and highest registers, even though we don't care about the actual values. Otherwise, we will restore only one register from the stack, since lowest will == highest in `pop_failure_point'. */ unsigned dummy_low_reg, dummy_high_reg; unsigned char *pdummy; char *sdummy; DEBUG_PRINT1 ("EXECUTING pop_failure_jump.\n"); POP_FAILURE_POINT (sdummy, pdummy, dummy_low_reg, dummy_high_reg, reg_dummy, reg_dummy, reg_info_dummy); } /* Note fall through. */ /* Unconditionally jump (without popping any failure points). */ case jump: unconditional_jump: EXTRACT_NUMBER_AND_INCR (mcnt, p); /* Get the amount to jump. */ DEBUG_PRINT2 ("EXECUTING jump %d ", mcnt); p += mcnt; /* Do the jump. */ DEBUG_PRINT2 ("(to 0x%x).\n", p); break; /* We need this opcode so we can detect where alternatives end in `group_match_null_string_p' et al. */ case jump_past_alt: DEBUG_PRINT1 ("EXECUTING jump_past_alt.\n"); goto unconditional_jump; /* Normally, the on_failure_jump pushes a failure point, which then gets popped at pop_failure_jump. We will end up at pop_failure_jump, also, and with a pattern of, say, `a+', we are skipping over the on_failure_jump, so we have to push something meaningless for pop_failure_jump to pop. */ case dummy_failure_jump: DEBUG_PRINT1 ("EXECUTING dummy_failure_jump.\n"); /* It doesn't matter what we push for the string here. What the code at `fail' tests is the value for the pattern. */ PUSH_FAILURE_POINT (0, 0, -2); goto unconditional_jump; /* At the end of an alternative, we need to push a dummy failure point in case we are followed by a `pop_failure_jump', because we don't want the failure point for the alternative to be popped. For example, matching `(a|ab)*' against `aab' requires that we match the `ab' alternative. */ case push_dummy_failure: DEBUG_PRINT1 ("EXECUTING push_dummy_failure.\n"); /* See comments just above at `dummy_failure_jump' about the two zeroes. */ PUSH_FAILURE_POINT (0, 0, -2); break; /* Have to succeed matching what follows at least n times. After that, handle like `on_failure_jump'. */ case succeed_n: EXTRACT_NUMBER (mcnt, p + 2); DEBUG_PRINT2 ("EXECUTING succeed_n %d.\n", mcnt); assert (mcnt >= 0); /* Originally, this is how many times we HAVE to succeed. */ if (mcnt > 0) { mcnt--; p += 2; STORE_NUMBER_AND_INCR (p, mcnt); DEBUG_PRINT3 (" Setting 0x%x to %d.\n", p, mcnt); } else if (mcnt == 0) { DEBUG_PRINT2 (" Setting two bytes from 0x%x to no_op.\n", p+2); p[2] = (unsigned char) no_op; p[3] = (unsigned char) no_op; goto on_failure; } break; case jump_n: EXTRACT_NUMBER (mcnt, p + 2); DEBUG_PRINT2 ("EXECUTING jump_n %d.\n", mcnt); /* Originally, this is how many times we CAN jump. */ if (mcnt) { mcnt--; STORE_NUMBER (p + 2, mcnt); goto unconditional_jump; } /* If don't have to jump any more, skip over the rest of command. */ else p += 4; break; case set_number_at: { DEBUG_PRINT1 ("EXECUTING set_number_at.\n"); EXTRACT_NUMBER_AND_INCR (mcnt, p); p1 = p + mcnt; EXTRACT_NUMBER_AND_INCR (mcnt, p); DEBUG_PRINT3 (" Setting 0x%x to %d.\n", p1, mcnt); STORE_NUMBER (p1, mcnt); break; } case wordbound: DEBUG_PRINT1 ("EXECUTING wordbound.\n"); if (AT_WORD_BOUNDARY (d)) break; goto fail; case notwordbound: DEBUG_PRINT1 ("EXECUTING notwordbound.\n"); if (AT_WORD_BOUNDARY (d)) goto fail; break; case wordbeg: DEBUG_PRINT1 ("EXECUTING wordbeg.\n"); if (WORDCHAR_P (d) && (AT_STRINGS_BEG (d) || !WORDCHAR_P (d - 1))) break; goto fail; case wordend: DEBUG_PRINT1 ("EXECUTING wordend.\n"); if (!AT_STRINGS_BEG (d) && WORDCHAR_P (d - 1) && (!WORDCHAR_P (d) || AT_STRINGS_END (d))) break; goto fail; #ifdef emacs #ifdef emacs19 case before_dot: DEBUG_PRINT1 ("EXECUTING before_dot.\n"); if (PTR_CHAR_POS ((unsigned char *) d) >= point) goto fail; break; case at_dot: DEBUG_PRINT1 ("EXECUTING at_dot.\n"); if (PTR_CHAR_POS ((unsigned char *) d) != point) goto fail; break; case after_dot: DEBUG_PRINT1 ("EXECUTING after_dot.\n"); if (PTR_CHAR_POS ((unsigned char *) d) <= point) goto fail; break; #else /* not emacs19 */ case at_dot: DEBUG_PRINT1 ("EXECUTING at_dot.\n"); if (PTR_CHAR_POS ((unsigned char *) d) + 1 != point) goto fail; break; #endif /* not emacs19 */ case syntaxspec: DEBUG_PRINT2 ("EXECUTING syntaxspec %d.\n", mcnt); mcnt = *p++; goto matchsyntax; case wordchar: DEBUG_PRINT1 ("EXECUTING Emacs wordchar.\n"); mcnt = (int) Sword; matchsyntax: PREFETCH (); if (SYNTAX (*d++) != (enum syntaxcode) mcnt) goto fail; SET_REGS_MATCHED (); break; case notsyntaxspec: DEBUG_PRINT2 ("EXECUTING notsyntaxspec %d.\n", mcnt); mcnt = *p++; goto matchnotsyntax; case notwordchar: DEBUG_PRINT1 ("EXECUTING Emacs notwordchar.\n"); mcnt = (int) Sword; matchnotsyntax: PREFETCH (); if (SYNTAX (*d++) == (enum syntaxcode) mcnt) goto fail; SET_REGS_MATCHED (); break; #else /* not emacs */ case wordchar: DEBUG_PRINT1 ("EXECUTING non-Emacs wordchar.\n"); PREFETCH (); if (!WORDCHAR_P (d)) goto fail; SET_REGS_MATCHED (); d++; break; case notwordchar: DEBUG_PRINT1 ("EXECUTING non-Emacs notwordchar.\n"); PREFETCH (); if (WORDCHAR_P (d)) goto fail; SET_REGS_MATCHED (); d++; break; #endif /* not emacs */ default: abort (); } continue; /* Successfully executed one pattern command; keep going. */ /* We goto here if a matching operation fails. */ fail: if (!FAIL_STACK_EMPTY ()) { /* A restart point is known. Restore to that state. */ DEBUG_PRINT1 ("\nFAIL:\n"); POP_FAILURE_POINT (d, p, lowest_active_reg, highest_active_reg, regstart, regend, reg_info); /* If this failure point is a dummy, try the next one. */ if (!p) goto fail; /* If we failed to the end of the pattern, don't examine *p. */ assert (p <= pend); if (p < pend) { boolean is_a_jump_n = false; /* If failed to a backwards jump that's part of a repetition loop, need to pop this failure point and use the next one. */ switch ((re_opcode_t) *p) { case jump_n: is_a_jump_n = true; case maybe_pop_jump: case pop_failure_jump: case jump: p1 = p + 1; EXTRACT_NUMBER_AND_INCR (mcnt, p1); p1 += mcnt; if ((is_a_jump_n && (re_opcode_t) *p1 == succeed_n) || (!is_a_jump_n && (re_opcode_t) *p1 == on_failure_jump)) goto fail; break; default: /* do nothing */ ; } } if (d >= string1 && d <= end1) dend = end_match_1; } else break; /* Matching at this starting point really fails. */ } /* for (;;) */ if (best_regs_set) goto restore_best_regs; FREE_VARIABLES (); return -1; /* Failure to match. */ } /* re_match_2 */ /* Subroutine definitions for re_match_2. */ /* We are passed P pointing to a register number after a start_memory. Return true if the pattern up to the corresponding stop_memory can match the empty string, and false otherwise. If we find the matching stop_memory, sets P to point to one past its number. Otherwise, sets P to an undefined byte less than or equal to END. We don't handle duplicates properly (yet). */ static boolean group_match_null_string_p (p, end, reg_info) unsigned char **p, *end; register_info_type *reg_info; { int mcnt; /* Point to after the args to the start_memory. */ unsigned char *p1 = *p + 2; while (p1 < end) { /* Skip over opcodes that can match nothing, and return true or false, as appropriate, when we get to one that can't, or to the matching stop_memory. */ switch ((re_opcode_t) *p1) { /* Could be either a loop or a series of alternatives. */ case on_failure_jump: p1++; EXTRACT_NUMBER_AND_INCR (mcnt, p1); /* If the next operation is not a jump backwards in the pattern. */ if (mcnt >= 0) { /* Go through the on_failure_jumps of the alternatives, seeing if any of the alternatives cannot match nothing. The last alternative starts with only a jump, whereas the rest start with on_failure_jump and end with a jump, e.g., here is the pattern for `a|b|c': /on_failure_jump/0/6/exactn/1/a/jump_past_alt/0/6 /on_failure_jump/0/6/exactn/1/b/jump_past_alt/0/3 /exactn/1/c So, we have to first go through the first (n-1) alternatives and then deal with the last one separately. */ /* Deal with the first (n-1) alternatives, which start with an on_failure_jump (see above) that jumps to right past a jump_past_alt. */ while ((re_opcode_t) p1[mcnt-3] == jump_past_alt) { /* `mcnt' holds how many bytes long the alternative is, including the ending `jump_past_alt' and its number. */ if (!alt_match_null_string_p (p1, p1 + mcnt - 3, reg_info)) return false; /* Move to right after this alternative, including the jump_past_alt. */ p1 += mcnt; /* Break if it's the beginning of an n-th alternative that doesn't begin with an on_failure_jump. */ if ((re_opcode_t) *p1 != on_failure_jump) break; /* Still have to check that it's not an n-th alternative that starts with an on_failure_jump. */ p1++; EXTRACT_NUMBER_AND_INCR (mcnt, p1); if ((re_opcode_t) p1[mcnt-3] != jump_past_alt) { /* Get to the beginning of the n-th alternative. */ p1 -= 3; break; } } /* Deal with the last alternative: go back and get number of the `jump_past_alt' just before it. `mcnt' contains the length of the alternative. */ EXTRACT_NUMBER (mcnt, p1 - 2); if (!alt_match_null_string_p (p1, p1 + mcnt, reg_info)) return false; p1 += mcnt; /* Get past the n-th alternative. */ } /* if mcnt > 0 */ break; case stop_memory: assert (p1[1] == **p); *p = p1 + 2; return true; default: if (!common_op_match_null_string_p (&p1, end, reg_info)) return false; } } /* while p1 < end */ return false; } /* group_match_null_string_p */ /* Similar to group_match_null_string_p, but doesn't deal with alternatives: It expects P to be the first byte of a single alternative and END one byte past the last. The alternative can contain groups. */ static boolean alt_match_null_string_p (p, end, reg_info) unsigned char *p, *end; register_info_type *reg_info; { int mcnt; unsigned char *p1 = p; while (p1 < end) { /* Skip over opcodes that can match nothing, and break when we get to one that can't. */ switch ((re_opcode_t) *p1) { /* It's a loop. */ case on_failure_jump: p1++; EXTRACT_NUMBER_AND_INCR (mcnt, p1); p1 += mcnt; break; default: if (!common_op_match_null_string_p (&p1, end, reg_info)) return false; } } /* while p1 < end */ return true; } /* alt_match_null_string_p */ /* Deals with the ops common to group_match_null_string_p and alt_match_null_string_p. Sets P to one after the op and its arguments, if any. */ static boolean common_op_match_null_string_p (p, end, reg_info) unsigned char **p, *end; register_info_type *reg_info; { int mcnt; boolean ret; int reg_no; unsigned char *p1 = *p; switch ((re_opcode_t) *p1++) { case no_op: case begline: case endline: case begbuf: case endbuf: case wordbeg: case wordend: case wordbound: case notwordbound: #ifdef emacs case before_dot: case at_dot: case after_dot: #endif break; case start_memory: reg_no = *p1; assert (reg_no > 0 && reg_no <= MAX_REGNUM); ret = group_match_null_string_p (&p1, end, reg_info); /* Have to set this here in case we're checking a group which contains a group and a back reference to it. */ if (REG_MATCH_NULL_STRING_P (reg_info[reg_no]) == MATCH_NULL_UNSET_VALUE) REG_MATCH_NULL_STRING_P (reg_info[reg_no]) = ret; if (!ret) return false; break; /* If this is an optimized succeed_n for zero times, make the jump. */ case jump: EXTRACT_NUMBER_AND_INCR (mcnt, p1); if (mcnt >= 0) p1 += mcnt; else return false; break; case succeed_n: /* Get to the number of times to succeed. */ p1 += 2; EXTRACT_NUMBER_AND_INCR (mcnt, p1); if (mcnt == 0) { p1 -= 4; EXTRACT_NUMBER_AND_INCR (mcnt, p1); p1 += mcnt; } else return false; break; case duplicate: if (!REG_MATCH_NULL_STRING_P (reg_info[*p1])) return false; break; case set_number_at: p1 += 4; default: /* All other opcodes mean we cannot match the empty string. */ return false; } *p = p1; return true; } /* common_op_match_null_string_p */ /* Return zero if TRANSLATE[S1] and TRANSLATE[S2] are identical for LEN bytes; nonzero otherwise. */ static int bcmp_translate (s1, s2, len, translate) unsigned char *s1, *s2; register int len; char *translate; { register unsigned char *p1 = s1, *p2 = s2; while (len) { if (translate[*p1++] != translate[*p2++]) return 1; len--; } return 0; } /* Entry points for GNU code. */ /* re_compile_pattern is the GNU regular expression compiler: it compiles PATTERN (of length SIZE) and puts the result in BUFP. Returns 0 if the pattern was valid, otherwise an error string. Assumes the `allocated' (and perhaps `buffer') and `translate' fields are set in BUFP on entry. We call regex_compile to do the actual compilation. */ char * re_compile_pattern (char *pattern, int length, struct re_pattern_buffer *bufp) { reg_errcode_t ret; /* GNU code is written to assume at least RE_NREGS registers will be set (and at least one extra will be -1). */ bufp->regs_allocated = REGS_UNALLOCATED; /* And GNU code determines whether or not to get register information by passing null for the REGS argument to re_match, etc., not by setting no_sub. */ bufp->no_sub = 0; /* Match anchors at newline. */ bufp->newline_anchor = 1; ret = regex_compile (pattern, length, re_syntax_options, bufp); return re_error_msg[(int) ret]; } /* Entry points compatible with 4.2 BSD regex library. We don't define them if this is an Emacs or POSIX compilation. */ #if !defined (emacs) && !defined (_POSIX_SOURCE) /* BSD has one and only one pattern buffer. */ static struct re_pattern_buffer re_comp_buf; char * re_comp (s) char *s; { reg_errcode_t ret; if (!s) { if (!re_comp_buf.buffer) return "No previous regular expression"; return 0; } if (!re_comp_buf.buffer) { re_comp_buf.buffer = (unsigned char *) malloc (200); if (re_comp_buf.buffer == NULL) return "Memory exhausted"; re_comp_buf.allocated = 200; re_comp_buf.fastmap = (char *) malloc (1 << BYTEWIDTH); if (re_comp_buf.fastmap == NULL) return "Memory exhausted"; } /* Since `re_exec' always passes NULL for the `regs' argument, we don't need to initialize the pattern buffer fields which affect it. */ /* Match anchors at newlines. */ re_comp_buf.newline_anchor = 1; ret = regex_compile (s, strlen (s), re_syntax_options, &re_comp_buf); /* Yes, we're discarding `const' here. */ return (char *) re_error_msg[(int) ret]; } int re_exec (s) char *s; { int len = strlen (s); return 0 <= re_search (&re_comp_buf, s, len, 0, len, (struct re_registers *) 0); } #endif /* not emacs and not _POSIX_SOURCE */ /* POSIX.2 functions. Don't define these for Emacs. */ #ifndef emacs /* regcomp takes a regular expression as a string and compiles it. PREG is a regex_t *. We do not expect any fields to be initialized, since POSIX says we shouldn't. Thus, we set `buffer' to the compiled pattern; `used' to the length of the compiled pattern; `syntax' to RE_SYNTAX_POSIX_EXTENDED if the REG_EXTENDED bit in CFLAGS is set; otherwise, to RE_SYNTAX_POSIX_BASIC; `newline_anchor' to REG_NEWLINE being set in CFLAGS; `fastmap' and `fastmap_accurate' to zero; `re_nsub' to the number of subexpressions in PATTERN. PATTERN is the address of the pattern string. CFLAGS is a series of bits which affect compilation. If REG_EXTENDED is set, we use POSIX extended syntax; otherwise, we use POSIX basic syntax. If REG_NEWLINE is set, then . and [^...] don't match newline. Also, regexec will try a match beginning after every newline. If REG_ICASE is set, then we considers upper- and lowercase versions of letters to be equivalent when matching. If REG_NOSUB is set, then when PREG is passed to regexec, that routine will report only success or failure, and nothing about the registers. It returns 0 if it succeeds, nonzero if it doesn't. (See regex.h for the return codes and their meanings.) */ int regcomp (preg, pattern, cflags) regex_t *preg; char *pattern; int cflags; { reg_errcode_t ret; unsigned syntax = (cflags & REG_EXTENDED) ? RE_SYNTAX_POSIX_EXTENDED : RE_SYNTAX_POSIX_BASIC; /* regex_compile will allocate the space for the compiled pattern. */ preg->buffer = 0; preg->allocated = 0; /* Don't bother to use a fastmap when searching. This simplifies the REG_NEWLINE case: if we used a fastmap, we'd have to put all the characters after newlines into the fastmap. This way, we just try every character. */ preg->fastmap = 0; if (cflags & REG_ICASE) { unsigned i; preg->translate = (char *) malloc (CHAR_SET_SIZE); if (preg->translate == NULL) return (int) REG_ESPACE; /* Map uppercase characters to corresponding lowercase ones. */ for (i = 0; i < CHAR_SET_SIZE; i++) preg->translate[i] = ISUPPER (i) ? tolower (i) : i; } else preg->translate = NULL; /* If REG_NEWLINE is set, newlines are treated differently. */ if (cflags & REG_NEWLINE) { /* REG_NEWLINE implies neither . nor [^...] match newline. */ syntax &= ~RE_DOT_NEWLINE; syntax |= RE_HAT_LISTS_NOT_NEWLINE; /* It also changes the matching behavior. */ preg->newline_anchor = 1; } else preg->newline_anchor = 0; preg->no_sub = !!(cflags & REG_NOSUB); /* POSIX says a null character in the pattern terminates it, so we can use strlen here in compiling the pattern. */ ret = regex_compile (pattern, strlen (pattern), syntax, preg); /* POSIX doesn't distinguish between an unmatched open-group and an unmatched close-group: both are REG_EPAREN. */ if (ret == REG_ERPAREN) ret = REG_EPAREN; return (int) ret; } /* regexec searches for a given pattern, specified by PREG, in the string STRING. If NMATCH is zero or REG_NOSUB was set in the cflags argument to `regcomp', we ignore PMATCH. Otherwise, we assume PMATCH has at least NMATCH elements, and we set them to the offsets of the corresponding matched substrings. EFLAGS specifies `execution flags' which affect matching: if REG_NOTBOL is set, then ^ does not match at the beginning of the string; if REG_NOTEOL is set, then $ does not match at the end. We return 0 if we find a match and REG_NOMATCH if not. */ int regexec (preg, string, nmatch, pmatch, eflags) regex_t *preg; char *string; size_t nmatch; regmatch_t pmatch[]; int eflags; { int ret; struct re_registers regs; regex_t private_preg; int len = strlen (string); boolean want_reg_info = !preg->no_sub && nmatch > 0; private_preg = *preg; private_preg.not_bol = !!(eflags & REG_NOTBOL); private_preg.not_eol = !!(eflags & REG_NOTEOL); /* The user has told us exactly how many registers to return information about, via `nmatch'. We have to pass that on to the matching routines. */ private_preg.regs_allocated = REGS_FIXED; if (want_reg_info) { regs.num_regs = nmatch; regs.start = TALLOC (nmatch, regoff_t); regs.end = TALLOC (nmatch, regoff_t); if (regs.start == NULL || regs.end == NULL) return (int) REG_NOMATCH; } /* Perform the searching operation. */ ret = re_search (&private_preg, string, len, /* start: */ 0, /* range: */ len, want_reg_info ? ®s : (struct re_registers *) 0); /* Copy the register information to the POSIX structure. */ if (want_reg_info) { if (ret >= 0) { unsigned r; for (r = 0; r < nmatch; r++) { pmatch[r].rm_so = regs.start[r]; pmatch[r].rm_eo = regs.end[r]; } } /* If we needed the temporary register info, free the space now. */ free (regs.start); free (regs.end); } /* We want zero return to mean success, unlike `re_search'. */ return ret >= 0 ? (int) REG_NOERROR : (int) REG_NOMATCH; } /* Returns a message corresponding to an error code, ERRCODE, returned from either regcomp or regexec. We don't use PREG here. */ size_t regerror (errcode, preg, errbuf, errbuf_size) int errcode; regex_t *preg; char *errbuf; size_t errbuf_size; { char *msg; size_t msg_size; if (errcode < 0 || errcode >= (sizeof (re_error_msg) / sizeof (re_error_msg[0]))) /* Only error codes returned by the rest of the code should be passed to this routine. If we are given anything else, or if other regex code generates an invalid error code, then the program has a bug. Dump core so we can fix it. */ abort (); msg = re_error_msg[errcode]; /* POSIX doesn't require that we do anything in this case, but why not be nice. */ if (! msg) msg = "Success"; msg_size = strlen (msg) + 1; /* Includes the null. */ if (errbuf_size != 0) { if (msg_size > errbuf_size) { strncpy (errbuf, msg, errbuf_size - 1); errbuf[errbuf_size - 1] = 0; } else strcpy (errbuf, msg); } return msg_size; } /* Free dynamically allocated space used by PREG. */ void regfree (preg) regex_t *preg; { if (preg->buffer != NULL) free (preg->buffer); preg->buffer = NULL; preg->allocated = 0; preg->used = 0; if (preg->fastmap != NULL) free (preg->fastmap); preg->fastmap = NULL; preg->fastmap_accurate = 0; if (preg->translate != NULL) free (preg->translate); preg->translate = NULL; } #endif /* not emacs */ /* Local variables: make-backup-files: t version-control: t trim-versions-without-asking: nil End: */ #endif /* not lint */ tRNAscan-SE-2.0/src/sre_string.c0000644000543100007160000001241311021467305015744 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* sre_string.c * * my library of extra string functions. Some for portability * across UNIXes */ #include #include #include #include "gnuregex.h" #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Obsolete. Anyone who doesn't have strstr() is * not ANSI-compliant and must die. */ #ifdef NOSTR char *strstr(char *s, char *subs) { int i; for ( ; *s != 0; s++) { if (*s == *subs) { for (i = 1; subs[i] != 0 && subs[i] == s[i]; i++) ; if (subs[i] == 0) return(s); } } return (NULL); } #endif /* NOSTR */ char * Strdup(char *s) { char *new; if ((new = (char *) malloc (strlen(s) +1)) == NULL) return NULL; strcpy(new, s); return new; } int Strinsert(char *s1, /* string to insert a char into */ char c, /* char to insert */ int pos) /* position in s1 to insert c at */ { char oldc; char *s; for (s = s1 + pos; c; s++) { /* swap current char for inserted one */ oldc = *s; /* pick up current */ *s = c; /* put down inserted one */ c = oldc; /* old becomes next to insert */ } *s = '\0'; return 1; } int Strdelete(char *s1, /* string to delete a char from */ int pos) /* position of char to delete 0..n-1 */ { char *s; for (s = s1 + pos; *s; s++) *s = *(s + 1); return 1; } void s2lower(char *s) { for (; *s != '\0'; s++) *s = sre_tolower((int) *s); } void s2upper(char *s) { for (; *s != '\0'; s++) *s = sre_toupper((int) *s); } void * MallocOrDie(size_t size) { void *ptr; if ((ptr = malloc (size)) == NULL) Die("malloc failed"); return ptr; } void * ReallocOrDie(void *p, size_t size) { void *ptr; if ((ptr = realloc(p, size)) == NULL) Die("realloc failed"); return ptr; } /* Function: Strparse() * * Purpose: Match a regexp to a string. * Return 0 if it matches, REG_NOMATCH if it doesn't. * The caller may request a copy of the text that matched by * passing a non-NULL pointer to a string pointer. * The called may also request copies of the text that matched * sub-regexps (parenthesized expressions) by passing * ntok > 0, and pointers to ntok different string pointers. * * Uses the GNU regexp library in extended POSIX compatibility * mode. * * I built this for ease of use, not speed nor efficiency. * * Example: Strparse("foo-...-baz", "foo-bar-baz", NULL, 0) returns 0 * Strparse("foo-\(...\)-baz", "foo-bar-baz", &buf1, 1, &buf2) * returns 0, copies "foo-bar-baz" into buf1, and "bar" * into buf2. * * Args: rexp - regular expression, extended POSIX form * s - string to match against * buf - if non-NULL, where to put copy of matching text * ntok - number of sub-regexps returned. * ... - variable number of pointers to strings to keep * copies of matched subtexts * * Return: 0 on match, REG_NOMATCH on failure to match * buf and the ptrs in varargs list are malloc'ed here, * must be free'd by caller. */ int Strparse(char *rexp, char *s, char **buf, int ntok, ...) { va_list ap; regex_t pat; int code; regmatch_t *pmatch; char **sp; int len; int i; code = regcomp(&pat, rexp, REG_EXTENDED); if (code > 0) { fprintf(stderr, "regular expression compilation failed\n"); exit(1); } if ((pmatch = (regmatch_t *) malloc (sizeof(regmatch_t) * (ntok+1))) == NULL) { fprintf(stderr, "malloc failed\n"); exit(1); } code = regexec(&pat, s, ntok+1, pmatch, 0); if (code == 0) { /* make copy of full matched text */ if (buf != NULL) { len = pmatch[0].rm_eo - pmatch[0].rm_so; if ((*buf = (char *) malloc(sizeof(char) * (len+1))) == NULL) { fprintf(stderr, "malloc failed\n"); exit(1); } strncpy(*buf, s+pmatch[0].rm_so, len); (*buf)[len] = '\0'; } /* make copies of subtexts */ if (ntok > 0) { va_start(ap, ntok); for (i = 1; i <= ntok; i++) { sp = va_arg(ap, char **); len = pmatch[i].rm_eo - pmatch[i].rm_so; if ((*sp = (char *) malloc(sizeof(char) * (len+1))) == NULL) { fprintf(stderr, "malloc failed\n"); exit(1); } strncpy(*sp, s+pmatch[i].rm_so, len); (*sp)[len] = '\0'; } } } va_end(ap); free(pmatch); regfree(&pat); return code; } /* Function: StrShuffle() * * Purpose: Returns a shuffled version of s2, in s1. * * Args: s1 - allocated space for shuffled string. * s2 - string to shuffle. * * Return: void */ void StrShuffle(char *s1, char *s2) { int len; int pos; char c; strcpy(s1, s2); for (len = strlen(s1); len > 1; len--) { pos = CHOOSE(len); c = s1[pos]; s1[pos] = s1[len-1]; s1[len-1] = c; } } tRNAscan-SE-2.0/src/alignio.c0000644000543100007160000003213011021467303015203 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* alignio.c * SRE, Mon Jul 12 11:57:37 1993 * * Input/output of sequence alignments. */ #include #include #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: FreeAlignment() * * Purpose: Free the space allocated to alignment, names, and optional * information. * * Args: aseqs - sequence alignment * nseq - number of sequences * ainfo - optional extra data. May be NULL. */ void FreeAlignment(char **aseqs, int nseq, struct aliinfo_s *ainfo) { int i; for (i = 0; i < nseq; i++) { if (ainfo->sqinfo[i].flags & SQINFO_SS) free(ainfo->sqinfo[i].ss); if (ainfo->sqinfo[i].flags & SQINFO_SA) free(ainfo->sqinfo[i].sa); } if (ainfo->flags & AINFO_CS) free(ainfo->cs); if (ainfo->flags & AINFO_RF) free(ainfo->rf); free(ainfo->sqinfo); Free2DArray(aseqs, nseq); } /* Function: MakeAlignedString() * * Purpose: Given a raw string of some type (secondary structure, say), * align it to a given aseq by putting gaps wherever the * aseq has gaps. * * Args: aseq: template for alignment * alen: length of aseq * ss: raw string to align to aseq * ret_s: RETURN: aligned ss * * Return: 1 on success, 0 on failure (and squid_errno is set.) * ret_ss is malloc'ed here and must be free'd by caller. */ int MakeAlignedString(char *aseq, int alen, char *ss, char **ret_s) { char *new; int apos, rpos; if ((new = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } for (apos = rpos = 0; apos < alen; apos++) if (! isgap(aseq[apos])) { new[apos] = ss[rpos]; rpos++; } else new[apos] = '.'; new[apos] = '\0'; if (rpos != strlen(ss)) { squid_errno = SQERR_PARAMETER; free(new); return 0; } *ret_s = new; return 1; } /* Function: MakeDealignedString() * * Purpose: Given an aligned string of some type (either sequence or * secondary structure, for instance), dealign it relative * to a given aseq. Return a ptr to the new string. * * Args: aseq : template alignment * alen : length of aseq * ss: : string to make dealigned copy of; same length as aseq * ret_s : RETURN: dealigned copy of ss * * Return: 1 on success, 0 on failure (and squid_errno is set) * ret_s is alloc'ed here and must be freed by caller */ int MakeDealignedString(char *aseq, int alen, char *ss, char **ret_s) { char *new; int apos, rpos; if ((new = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } for (apos = rpos = 0; apos < alen; apos++) if (! isgap(aseq[apos])) { new[rpos] = ss[apos]; rpos++; } new[rpos] = '\0'; if (alen != strlen(ss)) { squid_errno = SQERR_PARAMETER; free(new); return 0; } *ret_s = new; return 1; } /* Function: WritePairwiseAlignment() * * Purpose: Write a nice formatted pairwise alignment out, * with a BLAST-style middle line showing identities * as themselves (single letter) and conservative * changes as '+'. * * Args: ofp - open fp to write to (stdout, perhaps) * aseq1, aseq2 - alignments to write (not necessarily * flushed right with gaps) * name1, name2 - names of sequences * spos1, spos2 - starting position in each (raw) sequence * pam - PAM matrix; positive values define * conservative changes * indent - how many extra spaces to print on left * * Return: 1 on success, 0 on failure */ int WritePairwiseAlignment(FILE *ofp, char *aseq1, char *name1, int spos1, char *aseq2, char *name2, int spos2, int **pam, int indent) { char sname1[11]; /* shortened name */ char sname2[11]; int still_going; /* True if writing another block */ char buf1[61]; /* buffer for writing seq1; CPL+1*/ char bufmid[61]; /* buffer for writing consensus */ char buf2[61]; char *s1, *s2; /* ptrs into each sequence */ int count1, count2; /* number of symbols we're writing */ int rpos1, rpos2; /* position in raw seqs */ int rawcount1, rawcount2; /* number of nongap symbols written */ int apos; strncpy(sname1, name1, 10); sname1[10] = '\0'; strtok(sname1, WHITESPACE); strncpy(sname2, name2, 10); sname2[10] = '\0'; strtok(sname2, WHITESPACE); s1 = aseq1; s2 = aseq2; rpos1 = spos1; rpos2 = spos2; still_going = True; while (still_going) { still_going = False; /* get next line's worth from both */ strncpy(buf1, s1, 60); buf1[60] = '\0'; strncpy(buf2, s2, 60); buf2[60] = '\0'; count1 = strlen(buf1); count2 = strlen(buf2); /* is there still more to go? */ if ((count1 == 60 && s1[60] != '\0') || (count2 == 60 && s2[60] != '\0')) still_going = True; /* shift seq ptrs by a line */ s1 += count1; s2 += count2; /* assemble the consensus line */ for (apos = 0; apos < count1 && apos < count2; apos++) { if (!isgap(buf1[apos]) && !isgap(buf2[apos])) { if (buf1[apos] == buf2[apos]) bufmid[apos] = buf1[apos]; else if (pam[buf1[apos] - 'A'][buf2[apos] - 'A'] > 0) bufmid[apos] = '+'; else bufmid[apos] = ' '; } else bufmid[apos] = ' '; } bufmid[apos] = '\0'; rawcount1 = 0; for (apos = 0; apos < count1; apos++) if (!isgap(buf1[apos])) rawcount1++; rawcount2 = 0; for (apos = 0; apos < count2; apos++) if (!isgap(buf2[apos])) rawcount2++; (void) fprintf(ofp, "%*s%-10.10s %5d %s %5d\n", indent, "", sname1, rpos1, buf1, rpos1 + rawcount1 -1); (void) fprintf(ofp, "%*s %s\n", indent, "", bufmid); (void) fprintf(ofp, "%*s%-10.10s %5d %s %5d\n", indent, "", sname2, rpos2, buf2, rpos2 + rawcount2 -1); (void) fprintf(ofp, "\n"); rpos1 += rawcount1; rpos2 += rawcount2; } return 1; } /* Function: MingapAlignment() * * Purpose: Remove all-gap columns from a multiple sequence alignment * and its associated data. The alignment is assumed to be * flushed (all aseqs the same length). */ int MingapAlignment(char **aseqs, int num, struct aliinfo_s *ainfo) { int apos; /* position in original alignment */ int mpos; /* position in new alignment */ int idx; /* We overwrite aseqs, using its allocated memory. */ for (apos = 0, mpos = 0; aseqs[0][apos] != '\0'; apos++) { /* check for all-gap in column */ for (idx = 0; idx < num; idx++) if (! isgap(aseqs[idx][apos])) break; if (idx == num) continue; /* shift alignment and ainfo */ if (mpos != apos) { for (idx = 0; idx < num; idx++) aseqs[idx][mpos] = aseqs[idx][apos]; if (ainfo->flags & AINFO_CS) ainfo->cs[mpos] = ainfo->cs[apos]; if (ainfo->flags & AINFO_RF) ainfo->rf[mpos] = ainfo->rf[apos]; } mpos++; } /* null terminate everything */ for (idx = 0; idx < num; idx++) aseqs[idx][mpos] = '\0'; ainfo->alen = mpos; /* set new length */ if (ainfo->flags & AINFO_CS) ainfo->cs[mpos] = '\0'; if (ainfo->flags & AINFO_RF) ainfo->rf[mpos] = '\0'; return 1; } /* Function: RandomAlignment() * * Purpose: Create a random alignment from raw sequences. * * Ideally, we would like to sample an alignment from the * space of possible alignments according to its probability, * given a prior probability distribution for alignments. * I don't see how to describe such a distribution, let alone * sample it. * * This is a rough approximation that tries to capture some * desired properties. We assume the alignment is generated * by a simple HMM composed of match and insert states. * Given parameters (pop, pex) for the probability of opening * and extending an insertion, we can find the expected number * of match states, M, in the underlying model for each sequence. * We use an average M taken over all the sequences (this is * an approximation. The expectation of M given all the sequence * lengths is a nasty-looking summation.) * * M = len / ( 1 + pop ( 1 + 1/ (1-pex) ) ) * * Then, we assign positions in each raw sequence onto the M match * states and M+1 insert states of this "HMM", by rolling random * numbers and inserting the (rlen-M) inserted positions randomly * into the insert slots, taking into account the relative probability * of open vs. extend. * * The resulting alignment has two desired properties: insertions * tend to follow the HMM-like exponential distribution, and * the "sparseness" of the alignment is controllable through * pop and pex. * * Args: rseqs - raw sequences to "align", 0..nseq-1 * sqinfo - array of 0..nseq-1 info structures for the sequences * nseq - number of sequences * pop - probability to open insertion (0 minlen) M = minlen; /* make arrays that count insertions in M+1 possible insert states */ if ((ins = (int **) malloc (sizeof(int *) * nseq)) == NULL || (master_ins = (int *) malloc (sizeof(int) * (M+1))) == NULL) { squid_errno = SQERR_MEM; return 0; } for (idx = 0; idx < nseq; idx++) { if ((ins[idx] = (int *) malloc (sizeof(int) * (M+1))) == NULL) { squid_errno = SQERR_MEM; return 0; } for (rpos = 0; rpos <= M; rpos++) ins[idx][rpos] = 0; } /* normalize */ pop = pop / (pop+pex); pex = 1.0 - pop; /* make insertions for individual sequences */ for (idx = 0; idx < nseq; idx++) { apos = -1; for (rpos = 0; rpos < rlen[idx]-M; rpos++) { if (sre_random() < pop || apos == -1) /* open insertion */ apos = CHOOSE(M+1); /* choose 0..M */ ins[idx][apos]++; } } /* calculate master_ins, max inserts */ alen = M; for (apos = 0; apos <= M; apos++) { master_ins[apos] = 0; for (idx = 0; idx < nseq; idx++) if (ins[idx][apos] > master_ins[apos]) master_ins[apos] = ins[idx][apos]; alen += master_ins[apos]; } /* Now, construct alignment */ if ((aseqs = (char **) malloc (sizeof (char *) * nseq)) == NULL) { squid_errno = SQERR_MEM; return 0; } for (idx = 0; idx < nseq; idx++) if ((aseqs[idx] = (char *) malloc (sizeof(char) * (alen+1))) == NULL) { squid_errno = SQERR_MEM; return 0; } for (idx = 0; idx < nseq; idx++) { apos = rpos = 0; for (statepos = 0; statepos <= M; statepos++) { for (count = 0; count < ins[idx][statepos]; count++) aseqs[idx][apos++] = rseqs[idx][rpos++]; for (; count < master_ins[statepos]; count++) aseqs[idx][apos++] = ' '; if (statepos != M) aseqs[idx][apos++] = rseqs[idx][rpos++]; } aseqs[idx][alen] = '\0'; } ainfo->flags = 0; ainfo->alen = alen; ainfo->flags |= AINFO_ALEN; if ((ainfo->sqinfo = (SQINFO *) malloc (sizeof(SQINFO) * nseq)) == NULL) Die("malloc failed"); for (idx = 0; idx < nseq; idx++) SeqinfoCopy(&(ainfo->sqinfo[idx]), &(sqinfo[idx])); free(rlen); free(master_ins); Free2DArray(ins, nseq); *ret_aseqs = aseqs; return 1; } tRNAscan-SE-2.0/src/dbviterbi.c0000644000543100007160000003521111021467304015537 0ustar pchanlowelab/* dbviterbi.c * Mon Jan 31 10:06:14 1994 * * Search variant of the alignment algorithm. Derived from viterbi.c * * To optimize memory access patterns, the score storage is implemented * as a two-matrix version. amx is the * main storage. bmx is a smaller auxiliary matrix with a different * access pattern, holding scores of BEGIN state alignments; it * is used when calculating BIFURC scores. * * amx is [j = 0..1] [diff = 0..j] [y = 0..statenum] * diff == 0 is for off-diagonal boundary conditions (this is why diff is shifted +1) * diff == 1 is for the diagonal, i==j * We only need to keep two j rows in memory (current and previous). * * bmx is [y = 0..statenum] [j = 0..N] [ diff = 0..j] * a j,diff matrix exists only where y is a BEGIN state * * The 2.0 implementation allows variable storage per node rather * than storing and calculating a fixed max number of states per node, * which should save up to 2x in both time and space. * * An optimization is made which requires END states to be explicitly * added, so statenum (the number of states in the integer model) * is *inclusive* of ENDs. */ #include #include #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static int allocate_mx(struct istate_s *icm, int statenum, int window, int ****ret_amx, int ****ret_bmx); static int init_mx (struct istate_s *icm, int statenum, int N, int ***amx, int ***bmx); static int recurse_mx (struct istate_s *icm, int statenum, char *seq, int seqlen, int window, int ***amx, int ***bmx, int ithresh, int (*gotone_f)(int, int, double)); static void free_mx (int ***amx, int ***bmx, int statenum, int window); /* Function: ViterbiScan() * * Purpose: Scanning version of the Viterbi alignment algorithm, * for finding matches in a long sequence. * * Args: cm - the model to align sequence to * seq - sequence to align model to * window - scanning window size (nucleotides) * thresh - scores above this are reported through gotone_f() * gotone_f - function which gets told about a match * * Return: 1 on success, 0 on failure. */ int ViterbiScan(struct istate_s *icm, int statenum, char *seq, int window, double thresh, int (*gotone_f)(int, int, double)) { int ***amx; /* the main score matrix */ int ***bmx; /* the BEGIN score matrix */ int N; /* length of sequence */ int ithresh; /* thresh, converted and scaled to int */ N = strlen(seq); seq--; /* convert to 1..N. Ugh! */ ithresh = (int) (thresh * INTPRECISION); if (! allocate_mx(icm, statenum, window, &amx, &bmx)) return 0; #ifdef DEBUG printf("allocated matrices\n"); #endif if (! init_mx(icm, statenum, window, amx, bmx)) return 0; #ifdef DEBUG printf("matrices initialized\n"); #endif if (! recurse_mx(icm, statenum, seq, N, window, amx, bmx, ithresh, gotone_f)) return 0; #ifdef DEBUG printf("recursion finished\n"); #endif /* terminate scanning hit reporting */ ReportScanHit(-1,-1, 0.0, gotone_f); free_mx(amx, bmx, statenum, window); return 1; } /* Function: allocate_mx() * * Purpose: Malloc space for the score matrices. * amx and atr are indexed as j, i, y. * bmx and btr are indexed as k, j, i. * In the two sequence dimensions j, i they are * diagonal (+1 off diagonal) matrices with * rows j = 0..N, i = 1..j+1. * In the node dimension k bmx and btr are k = 0..M. * In the state dimension y amx and atr are y = 0..numstates. * * Args: icm - the int, log-odds, state-based model * statenum - number of states in model * window - length of scanning window * ret_amx - RETURN: main score matrix * ret_bmx - RETURN: BEGIN score matrix * * Return: Ptr to allocated scoring matrix, or * dies and exits. */ static int allocate_mx(struct istate_s *icm, int statenum, int window, int ****ret_amx, int ****ret_bmx) { int ***amx; int ***bmx; int diag, j, y; /* Main matrix, amx: fastest varying index is y (j,i,y) * we only keep two rows for j, 0 and 1. */ /* malloc for j = 0..1 rows */ if ((amx = (int ***) malloc (2 * sizeof(int **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (j = 0; j <= 1; j++) /* loop over rows j = 0..1 */ { /* malloc for diag = 0..window cols */ if ((amx[j] = (int **) malloc ((window + 1) * sizeof(int *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* loop over cols diag = 0..window */ for (diag = 0; diag <= window; diag++) /* malloc for y = 0..statenum-1 decks */ if ((amx[j][diag] = (int *) malloc ((statenum) * sizeof (int ))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } /* B auxiliary matrix: fastest varying index is diag (y,j,diag) * bmx keeps score decks for BEGIN states */ /* 0..statenum-1 decks */ if ((bmx = (int ***) malloc (statenum * sizeof(int **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (y = 0; y < statenum; y++) { bmx[y] = NULL; /* we keep score info for BEGIN states */ if (icm[y].statetype == uBEGIN_ST) { /* j= 0..window-1 rows */ if ((bmx[y] = (int **) malloc ((window) * sizeof(int *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* diff = 0..window columns */ for (j = 0; j < window; j++) if ((bmx[y][j] = (int *) malloc ((window+1) * sizeof(int ))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } } *ret_amx = amx; *ret_bmx = bmx; return 1; } /* Function: free_mx() * * Purpose: Free the space allocated to the scoring and traceback matrices. * Precisely mirrors the allocations above in allocate_cvmx(). * * Return: (void) */ static void free_mx(int ***amx, int ***bmx, int statenum, int window) { int diag, j, y; /* Free the main matrix, amx: * amx[j][i][y] = [0..1] [0..window] [0..statenum-1] */ for (j = 0; j <= 1; j++) { for (diag = 0; diag <= window; diag++) free(amx[j][diag]); free(amx[j]); } free(amx); /* Free the auxiliary matrix, bmx * bmx[y][j][i] = [0..statenum-1] [0..window] [0..window] */ for (y = 0; y < statenum; y++) { if (bmx[y] != NULL) { for (j = 0; j < window; j++) free(bmx[y][j]); free(bmx[y]); } } free(bmx); } /* Function: init_mx() * * Purpose: Initialization of the scoring matrices. We initialize the off-diagonal, * the diagonal, and the "floor" (end states) of the cube. * * Return: 1 on success, 0 on failure. */ static int init_mx(struct istate_s *icm, /* integer model */ int statenum, /* number of states in icm */ int window, /* size of scanning window on sequence */ int ***amx, int ***bmx) { int diag, j, y; /* counters for indices over the cvmx */ int ynext; /* index of next state k+1 */ int *beam; /* z-axis vector of numbers in amx */ /* Init the whole amx to -Infinity. We do this with memcpy, trying * to be fast. We fill in j=0,diag=0 by hand, then memcpy() the other * columns. */ for (y = 0; y < statenum; y++) amx[0][0][y] = amx[1][0][y] = NEGINFINITY; for (diag = 1; diag <= window; diag++) { memcpy(amx[0][diag], amx[0][0], statenum * sizeof(int)); memcpy(amx[1][diag], amx[0][0], statenum * sizeof(int)); } /* Init the whole bmx to -Inf. We know state 0 is a begin (it's ROOT), so we * start there, and memcpy rows as needed. */ for (diag = 0; diag <= window; diag++) bmx[0][0][diag] = NEGINFINITY; for (j = 1; j < window; j++) memcpy(bmx[0][j], bmx[0][0], (window+1) * sizeof(int)); for (y = 1; y < statenum; y++) if (bmx[y] != NULL) for (j = 0; j < window; j++) memcpy(bmx[y][j], bmx[0][0], (window+1) * sizeof(int)); /* Init the off-diagonal (j = 0..window-1; diag == 0) with -log P scores. * End state = 0; * del, bifurc states are calc'ed * begin states same as del's * THIS IS WASTEFUL AND SHOULD BE CHANGED. */ for (j = 0; j < window; j++) for (y = statenum-1; y >= 0; y--) { /* Set the alignment of END states to the off-diagonal (diag = 0) * to be zero, and never touch them again. */ if (icm[y].statetype == uEND_ST) amx[j%2][0][y] = 0; else if (icm[y].statetype == uBIFURC_ST) amx[j%2][0][y] = bmx[icm[y].tmx[0]][j][0] + bmx[icm[y].tmx[1]][j][0]; else if (icm[y].statetype == uDEL_ST || icm[y].statetype == uBEGIN_ST) { /* only calc DEL-DEL and BEGIN-DEL transitions. Since * we optimized the state transition tables, removing * the unused ones, we don't know where the number * for "to DEL" is! But we can find it, because it'll * be the connection to a non-infinite score */ beam = amx[j%2][0] + y + icm[y].offset; for (ynext = 0; ynext < icm[y].connectnum; ynext++) { if (*beam != NEGINFINITY) amx[j%2][0][y] = *beam + icm[y].tmx[ynext]; beam++; } } /* make a copy into bmx if y is a BEGIN */ if (icm[y].statetype == uBEGIN_ST) bmx[y][j][0] = amx[j%2][0][y]; } return 1; } /* Function: recurse_mx() * * Purpose: Carry out the fill stage of the dynamic programming * algorithm. After each j row is filled in, check the score * of best full alignment ending at this row; if greater * than threshold (ithresh), report it. * * Returns: 1 on success, 0 on failure. */ static int recurse_mx(struct istate_s *icm, /* integer, state-form model */ int statenum, /* number of states in icm */ char *seq, /* sequence, 1..seqlen */ int seqlen, /* length of seq */ int window, /* length of scanning window on seq */ int ***amx, /* main scoring matrix */ int ***bmx, /* bifurc scoring matrix */ int ithresh, /* reporting threshold */ int (*gotone_f)(int, int, double)) { int i, j, y; /* indices for 3 dimensions */ int aj; /* 0 or 1, index for j in A matrix */ int bj; /* 0..window-1, index for j in B matrix */ int diff; /* loop counter for difference: diff = j-i + 1 */ int symi, symj; /* symbol indices for seq[i], seq[j] */ int sc; /* tmp for a score */ int ynext; /* index of next state y */ int bestdiff, bestscore; int *beam; /* ptr to a beam (z-axis vector) */ int leftdiff; /* diff coord of BEGIN_L of a bifurc */ int leftj; /* j coord of BEGIN_L of a bifurc */ int **left_p; /* pointer into whole 2D deck of BEGINL's of a bifurc */ int *right_p; /* ptr into row of BEGIN_R's of a bifurc */ int *scp; /* score pointer: ptr into beam of scores being calc'ed */ struct istate_s *st; /* state pointer: ptr at current state in icm */ int *tmx; int emitsc; for (j = 1; j <= seqlen; j++) { aj = j % 2; /* 0 or 1 index in amx */ bj = j % window; /* 0..window-1 index in bmx */ symj = SymbolIndex(seq[j]); for (diff = 1; diff <= window && diff <= j; diff++) { i = j - diff + 1; symi = SymbolIndex(seq[i]); scp = &amx[aj][diff][statenum-1]; st = &icm[statenum-1]; for (y = statenum-1; y >= 0; y--, scp--, st--) { /* loop over states */ if (st->statetype != uBIFURC_ST) /* a normal (non-BIFURC) state */ { /* Connect the "beam" pointer to the appropriate * starting place in the ynext scores we're connecting * y to */ switch (st->statetype) { case uBEGIN_ST: case uDEL_ST: beam = amx[aj][diff]; emitsc = 0; break; case uMATP_ST: /* !aj toggles from 0 to 1 and vice versa */ if (diff == 1) continue; beam = amx[!aj][diff-2]; emitsc = st->emit[symi * ALPHASIZE + symj]; break; case uMATR_ST: case uINSR_ST: beam = amx[!aj][diff-1]; emitsc = st->emit[symj]; break; case uMATL_ST: case uINSL_ST: beam = amx[aj][diff-1]; emitsc = st->emit[symi]; break; case uEND_ST: continue; default: Die("no such state type %d", st->statetype); } beam += y + st->offset; tmx = st->tmx; /* Init for ynext == 0 case */ *scp = *beam + *tmx; /* Calculate remaining cases */ for (ynext = 1; ynext < st->connectnum; ynext++) { beam++; tmx++; if (*beam > *scp) { sc = *beam + *tmx; if (sc > *scp) *scp = sc; } } /* Add emission scores now */ *scp += emitsc; /* Make a copy into bmx, btr if necessary */ if (st->statetype == uBEGIN_ST) bmx[y][bj][diff] = *scp; } /* end block of normal state stuff */ else /* a BIFURC state */ { leftdiff = diff; leftj = bj; right_p = bmx[st->tmx[1]][leftj]; left_p = bmx[st->tmx[0]]; /* init w/ case that left branch emits it all */ *scp = left_p[leftj][leftdiff] + *right_p; while (leftdiff > 0) { leftdiff--; leftj = leftj ? leftj-1 : window-1; /* scan window wraparound */ right_p++; sc = left_p[leftj][leftdiff] + *right_p; if (sc > *scp) *scp = sc; } } } /* end loop over states */ } /* end loop over diff */ /* We've completed a row. Now we can examine the scores in diff, * aj, ROOT_ST to decide whether to report this row. If we do, * we report the 1..seqlen i, j coords of the matching subsequence * in seq, as well as the score converted to double-precision bits. */ bestdiff = 1; bestscore = bmx[0][bj][1]; for (diff = 2; diff <= window; diff++) if (bmx[0][bj][diff] > bestscore) { bestscore = bmx[0][bj][diff]; bestdiff = diff; } if (bestscore > ithresh) if (! ReportScanHit(j - bestdiff + 1, j, (double)(bestscore / INTPRECISION), gotone_f)) Warn("caller ignored report of a match!"); } /* end loop over j */ return 1; } tRNAscan-SE-2.0/src/smallviterbi.c0000644000543100007160000006030711021467305016267 0ustar pchanlowelab/* smallviterbi.c * Mon Jan 24 11:38:21 1994 * * Small-memory version of viterbi.c * * In the two-matrix version of the alignment algorithm, we keep * a matrix for the BEGIN states (B matrix) and a full matrix for all * the scores (A matrix). The database scanning version of the algorithm takes * advantage of the fact that, for scoring, we don't need to keep * a full cube around for matrix A; we only need the current row and the * last row. We only need a full cube of information for the BEGIN * state scores, which we get from the B matrix. * * This trick saves a large amount of memory, depending on the structure * of the model. (The fewer bifurcations and begins in the model, the more * memory this trick can save.) Unfortunately, it gives up the ability * to trace back and recover an alignment. * * In this module, we add back just enough information to the scanning * algorithm to enable a traceback, at the expense of re-doing some * calculation. The goal is to be able to fit 200-400 nt RNA sequences * into memory. * * I will refer to a model "segment". A segment is a linear (unbranched) * chunk of the model, starting at a BEGIN/ROOT state, ending at a * BIFURC/END state. * * Matrix cells now carry traceback information. This number, tback, indicates * the i,j coords that this segment's BIFURC/END aligns to. * tback is determined recursively. A BIFURC/END's tback points to itself. * All other tbacks are copied from the state that is connected to by * the maximally likely path. * * A traceback is done by using bmx as a framework, and recalculating bits * of the alignment in between BEGINs and BIFURC/ENDs. Thus, if * we know that a BEGIN aligns to i1, j1, we can get two numbers i2,j2 from * the BEGIN's tback, and know that the segment aligns to the sequence * (i1..i2-1)(j2+1..j1). Then we can recalculate the alignment of this * model segment to that subsequence, and reconstruct a full traceback. * * tback is a single unsigned integer. The two numbers i,j are restricted * to 16 bits and are packed into tback by bit-shifting, i<<16. * * */ /* * amx and atr are [j = 0..N] [diff = 0..j] [y = 0..statenum] * diff == 0 is for off-diagonal boundary conditions (this is why diff is shifted +1) * diff == 1 is for the diagonal, i==j * * bmx and btr are [y = 0..statenum] [j = 0..N] [ diff = 0..j] * a j,diff matrix exists only where y is a BEGIN state * * An optimization is made which requires END states to be explicitly * added, so statenum (the number of states in the integer model) * is *inclusive* of ENDs. */ #include #include #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* This is how we pack tracebacks into a single machine word. * We assume a 32 bit int. * If you're porting this code, all you have to do is make sure * pack_tb() puts two 16-bit ints in one data type TBACK, and unpack_tb() * gets them back. */ typedef unsigned int TBACK; #define pack_tb(i,j) ((i)<<16 | (j)) #define PACKED_I 0xFFFF0000U #define PACKED_J 0x0000FFFFU static void unpack_tb(TBACK tback, int *ret_i, int *ret_j) { *ret_j = tback & PACKED_J; *ret_i = (tback & PACKED_I) >> 16; } static int allocate_mx(struct istate_s *icm,int statenum, int seqlen, int ****ret_amx, TBACK ****ret_atr, int ****ret_bmx, TBACK ****ret_btr); static int init_mx (struct istate_s *icm, int statenum, int N, int ***amx, TBACK ***atr, int ***bmx, TBACK ***btr); static int recurse_mx (struct istate_s *icm, int statenum, char *seq, int N, int ***amx, TBACK ***atr, int ***bmx, TBACK ***btr); static int trace_mx (struct istate_s *icm, char *seq, int N, int ***bmx, TBACK ***btr, struct trace_s **ret_tr); static void free_mx (int ***amx, TBACK ***atr, int ***bmx, TBACK ***btr, int statenum, int seqlen); #ifdef DEBUG static void print_tb(int tb); static void print_small_mx(FILE *fp, struct istate_s *icm, int statenum, char *seq, int N, int ***bmx, TBACK ***btr); #endif /* DEBUG */ /* Function: SmallViterbiAlign() * * Purpose: Align a sequence to a model, using the small-memory * variant of the alignment algorithm. Return the score * of the alignment and the traceback. * * Args: icm - the model to align sequence to * statenum = number of states in icm * seq - sequence to align model to * ret_score - RETURN: global alignment score * ret_trace - RETURN: traceback tree * * Return: 1 on success, 0 on failure. */ int SmallViterbiAlign(struct istate_s *icm, int statenum, char *seq, double *ret_score, struct trace_s **ret_trace) { int ***amx; /* the main score matrix */ TBACK ***atr; /* amx's traceback pointers */ int ***bmx; /* the BEGIN score matrix */ TBACK ***btr; /* bmx's traceback pointers */ int N; /* length of sequence */ N = strlen(seq); seq--; /* convert to 1..N. Ugh! */ if (! allocate_mx(icm, statenum, N, &amx, &atr, &bmx, &btr)) return 0; #ifdef DEBUG printf("allocated matrices\n"); #endif if (! init_mx(icm, statenum, N, amx, atr, bmx, btr)) return 0; #ifdef DEBUG printf("matrices initialized\n"); print_small_mx(stdout, icm, statenum, seq, N, bmx, btr); #endif if (! recurse_mx(icm, statenum, seq, N, amx, atr, bmx, btr)) return 0; #ifdef DEBUG printf("recursion finished\n"); print_small_mx(stdout, icm, statenum, seq, N, bmx, btr); #endif *ret_score = ((double) bmx[0][N][N] / INTPRECISION); #ifdef DEBUG printf("have a score of %.2f, starting traceback\n", *ret_score); #endif if (! trace_mx(icm, seq, N, bmx, btr, ret_trace)) return 0; #ifdef DEBUG printf("trace complete\n"); #endif free_mx(amx, atr, bmx, btr, statenum, N); return 1; } /* Function: allocate_mx() * * Purpose: Malloc space for the score matrices. * amx and atr are indexed as j, i, y. * bmx and btr are indexed as k, j, i. * In the two sequence dimensions j, i they are * diagonal (+1 off diagonal) matrices with * rows j = 0..N, i = 1..j+1. * In the node dimension k bmx and btr are k = 0..M. * In the state dimension y amx and atr are y = 0..numstates. * * Args: icm - the int, log-odds, state-based model * statenum - number of states in model * seqlen - length of sequence * ret_amx - RETURN: main score matrix * ret_atr - RETURN: amx's traceback pointers * ret_bmx - RETURN: BEGIN/BIFURC/END score matrix * ret_btr - RETURN: bmx's traceback pointers * * Return: Ptr to allocated scoring matrix, or * dies and exits. */ static int allocate_mx(struct istate_s *icm, int statenum, int seqlen, int ****ret_amx, TBACK ****ret_atr, int ****ret_bmx, TBACK ****ret_btr) { int ***amx; TBACK ***atr; int ***bmx; TBACK ***btr; int diag, j, y; /* Main matrix, amx: fastest varying index is y (j,i,y) * we only keep two rows for j, 0 and 1. */ /* malloc for j = 0..1 rows */ if ((amx = (int ***) malloc (2 * sizeof(int **))) == NULL || (atr = (TBACK ***) malloc (2 * sizeof(TBACK **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (j = 0; j <= 1; j++) /* loop over rows j = 0..1 */ { /* malloc for diag = 0..j (0..seqlen) cols */ if ((amx[j] = (int **) malloc ((seqlen + 1) * sizeof(int *))) == NULL || (atr[j] = (TBACK **) malloc ((seqlen + 1) * sizeof(TBACK *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* loop over cols diag = 0..seqlen */ for (diag = 0; diag <= seqlen; diag++) /* malloc for y = 0..statenum-1 decks */ if ((amx[j][diag] = (int *) malloc ((statenum) * sizeof (int ))) == NULL || (atr[j][diag] = (TBACK *) malloc ((statenum) * sizeof (TBACK))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } /* B auxiliary matrices: fastest varying index is diag (y,j,diag) * bmx, btr keeps score, traceback decks for BEGIN states */ /* 0..statenum-1 decks */ if ((bmx = (int ***) malloc (statenum * sizeof(int **))) == NULL || (btr = (TBACK ***) malloc (statenum * sizeof(TBACK **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (y = 0; y < statenum; y++) { bmx[y] = NULL; btr[y] = NULL; /* we keep score info for BEGIN and BIFURC states */ if (icm[y].statetype == uBEGIN_ST || icm[y].statetype == uBIFURC_ST) { /* j= 0..seqlen rows */ if ((bmx[y] = (int **) malloc ((seqlen+1) * sizeof(int *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* i = 0..j columns */ for (j = 0; j <= seqlen; j++) if ((bmx[y][j] = (int *) malloc ((j+1) * sizeof(int ))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } /* We keep traceback info only for BEGIN states */ if (icm[y].statetype == uBEGIN_ST) { /* j= 0..seqlen rows */ if ((btr[y] = (TBACK **) malloc ((seqlen+1) * sizeof(TBACK *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* i = 0..j columns */ for (j = 0; j <= seqlen; j++) if ((btr[y][j] = (TBACK *) malloc ((j+1) * sizeof(TBACK))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } } *ret_amx = amx; *ret_atr = atr; *ret_bmx = bmx; *ret_btr = btr; return 1; } /* Function: free_mx() * * Purpose: Free the space allocated to the scoring and traceback matrices. * Precisely mirrors the allocations above in allocate_cvmx(). * * Return: (void) */ static void free_mx(int ***amx, TBACK ***atr, int ***bmx, TBACK ***btr, int statenum, int seqlen) { int diag, j, y; /* Free the main matrix, amx: * amx[j][i][y] = [0..1] [0..seqlen] [0..statenum-1] */ for (j = 0; j <= 1; j++) { for (diag = 0; diag <= seqlen; diag++) { free(amx[j][diag]); free(atr[j][diag]); } free(amx[j]); free(atr[j]); } free(amx); free(atr); /* Free the auxiliary matrices, bmx and btr * bmx[y][j][i] = [0..statenum-1] [0..seqlen] [0..seqlen] */ for (y = 0; y < statenum; y++) { if (bmx[y] != NULL) { for (j = 0; j <= seqlen; j++) free(bmx[y][j]); free(bmx[y]); } if (btr[y] != NULL) { for (j = 0; j <= seqlen; j++) free(btr[y][j]); free(btr[y]); } } free(bmx); free(btr); } /* Function: init_mx() * * Purpose: Initialization of the scoring matrices. We initialize the off-diagonal, * the diagonal, and the "floor" (end states) of the cube. * * Return: 1 on success, 0 on failure. */ static int init_mx(struct istate_s *icm, /* integer model */ int statenum, /* number of states in icm */ int N, /* length of seq */ int ***amx, TBACK ***atr, int ***bmx, TBACK ***btr) { int diag, j, y; /* counters for indices over the cvmx */ int ynext; /* index of next state k+1 */ int *beam; /* z-axis vector of numbers in amx */ /* Init the whole amx to -Infinity. We do this with memcpy, trying * to be fast. We fill in j=0,diag=0 by hand, then memcpy() the other * columns. */ for (y = 0; y < statenum; y++) amx[0][0][y] = amx[1][0][y] = NEGINFINITY; for (diag = 1; diag <= N; diag++) { memcpy(amx[0][diag], amx[0][0], statenum * sizeof(int)); memcpy(amx[1][diag], amx[0][0], statenum * sizeof(int)); } /* atr END and BIFURC traceback pointers point to themselves. * just set everything to point at itself. */ for (j = 0; j <= 1; j++) for (diag = 0; diag <= N; diag++) for (y = 0; y < statenum; y++) atr[j][diag][y] = pack_tb(diag, j); /* Init the whole bmx to -Inf. We know state 0 is a begin (it's ROOT), so we * start there, and memcpy rows as needed. */ for (diag = 0; diag <= N; diag++) bmx[0][N][diag] = NEGINFINITY; for (j = 0; j < N; j++) memcpy(bmx[0][j], bmx[0][N], (j+1) * sizeof(int)); for (y = 1; y < statenum; y++) if (bmx[y] != NULL) for (j = 0; j <= N; j++) memcpy(bmx[y][j], bmx[0][N], (j+1) * sizeof(int)); /* Set all btr traceback ptrs to point at themselves */ for (y = 0; y < statenum; y++) if (btr[y] != NULL) for (j = 0; j <= N; j++) for (diag = 0; diag <= j; diag++) btr[y][j][diag] = pack_tb(diag,j); /* Init the off-diagonal (j = 0..N; diag == 0) with -log P scores. * End state = 0; * del, bifurc states are calc'ed * begin states same as del's * THIS IS WASTEFUL AND SHOULD BE CHANGED. */ for (j = 0; j <= N; j++) for (y = statenum-1; y >= 0; y--) { if (icm[y].statetype == uEND_ST) amx[j%2][0][y] = 0; else if (icm[y].statetype == uBIFURC_ST) amx[j%2][0][y] = bmx[icm[y].tmx[0]][j][0] + bmx[icm[y].tmx[1]][j][0]; else if (icm[y].statetype == uDEL_ST || icm[y].statetype == uBEGIN_ST) { /* only calc DEL-DEL and BEGIN-DEL transitions. Since * we optimized the state transition tables, removing * the unused ones, we don't know where the number * for "to DEL" is! But we can find it, because it'll * be the connection to a non-infinite score */ beam = amx[j%2][0] + y + icm[y].offset; for (ynext = 0; ynext < icm[y].connectnum; ynext++) { if (*beam != NEGINFINITY) amx[j%2][0][y] = *beam + icm[y].tmx[ynext]; beam++; } } /* make a copy into bmx if y is a BEGIN or BIFURC */ if (icm[y].statetype == uBEGIN_ST || icm[y].statetype == uBIFURC_ST ) bmx[y][j][0] = amx[j%2][0][y]; } return 1; } /* Function: recurse_mx() * * Purpose: Carry out the fill stage of the dynamic programming * algorithm. * * Returns: 1 on success, 0 on failure. */ static int recurse_mx(struct istate_s *icm, /* integer, state-form model */ int statenum, /* number of states in icm */ char *seq, /* sequence, 1..N */ int N, /* length of seq */ int ***amx, /* main scoring matrix */ TBACK ***atr, /* tracebacks for amx */ int ***bmx, /* bifurc scoring matrix */ TBACK ***btr) /* tracebacks for btr */ { int i, j, y; /* indices for 3 dimensions */ int aj; /* 0 or 1, index for j in A matrices */ int diff; /* loop counter for difference: diff = j-i + 1 */ int symi, symj; /* symbol indices for seq[i], seq[j] */ int sc; /* tmp for a score */ int ynext; /* index of next state y */ int *beam; /* ptr to a beam (z-axis vector) */ TBACK *beamt; /* ptr into connected traceback beam */ int leftdiff; /* diff coord of BEGIN_L of a bifurc */ int leftj; /* j coord of BEGIN_L of a bifurc */ int **left_p; /* pointer into whole 2D deck of BEGINL's of a bifurc */ int *right_p; /* ptr into row of BEGIN_R's of a bifurc */ int *scp; /* score pointer: ptr into beam of scores being calc'ed */ TBACK *sct; /* tback beam being calc'ed */ struct istate_s *st; /* state pointer: ptr at current state in icm */ int *tmx; int emitsc; for (j = 1; j <= N; j++) { aj = j % 2; symj = SymbolIndex(seq[j]); /* we have to init END and BIF states to point at themselves in this row of atr */ for (diff = 0; diff <= j; diff++) for (y = 0; y < statenum; y++) if (icm[y].statetype == uBIFURC_ST || icm[y].statetype == uEND_ST) atr[aj][diff][y] = pack_tb(diff, j); for (diff = 1; diff <= j; diff++) { i = j - diff + 1; symi = SymbolIndex(seq[i]); scp = &amx[aj][diff][statenum-1]; sct = &atr[aj][diff][statenum-1]; st = &icm[statenum-1]; for (y = statenum-1; y >= 0; y--, scp--, sct--, st--) { /* loop over states */ if (st->statetype != uBIFURC_ST) /* a normal (non-BIFURC) state */ { /* Connect the "beam" pointer to the appropriate * starting place in the ynext scores we're connecting * y to */ switch (st->statetype) { case uBEGIN_ST: case uDEL_ST: beam = amx[aj][diff]; beamt = atr[aj][diff]; emitsc = 0; break; case uMATP_ST: /* !aj toggles from 0 to 1 and vice versa */ if (diff == 1) continue; beam = amx[!aj][diff-2]; beamt = atr[!aj][diff-2]; emitsc = st->emit[symi * ALPHASIZE + symj]; break; case uMATR_ST: case uINSR_ST: beam = amx[!aj][diff-1]; beamt = atr[!aj][diff-1]; emitsc = st->emit[symj]; break; case uMATL_ST: case uINSL_ST: beam = amx[aj][diff-1]; beamt = atr[aj][diff-1]; emitsc = st->emit[symi]; break; case uEND_ST: continue; default: Die("no such state type %d", st->statetype); } beam += y + st->offset; beamt += y + st->offset; tmx = st->tmx; /* Init for ynext == 0 case */ *scp = *beam + *tmx; *sct = *beamt; /* Calculate remaining cases */ for (ynext = 1; ynext < st->connectnum; ynext++) { beam++; beamt++; tmx++; if (*beam > *scp) { sc = *beam + *tmx; if (sc > *scp) { *scp = sc; *sct = *beamt; } } } /* Add emission scores now */ *scp += emitsc; /* Make a copy into bmx, btr if necessary */ if (st->statetype == uBEGIN_ST) { bmx[y][j][diff] = *scp; btr[y][j][diff] = *sct; } } /* end block of normal state stuff */ else /* a BIFURC state */ { leftdiff = diff; leftj = j; right_p = bmx[st->tmx[1]][j]; left_p = bmx[st->tmx[0]]; /* init w/ case that left branch emits it all */ *scp = left_p[leftj][leftdiff] + *right_p; while (leftdiff > 0) { leftdiff--; leftj--; right_p++; sc = left_p[leftj][leftdiff] + *right_p; if (sc > *scp) *scp = sc; } /* keep copy of score in bmx, for tracing */ bmx[y][j][diff] = *scp; } } /* end loop over states */ } /* end loop over diff */ } /* end loop over j */ return 1; } /* Function: trace_mx() * * Purpose: Trace stage of the dynamic programming: starting * at j=N, i=1, k=0/BEGIN, trace back the optimal * path. Returns a binary tree, ret_trace. * Caller is reponsible for free'ing ret_trace. */ static int trace_mx(struct istate_s *icm, /* the model to align */ char *seq, /* sequence to align it to 1..N */ int N, int ***bmx, /* matrix of BEGIN scores */ TBACK ***btr, /* matrix of BIFURC/END tbacks */ struct trace_s **ret_trace) /* RETURN: the traceback tree */ { struct trace_s *tr; /* the traceback tree under construction */ struct trace_s *curr_tr; /* ptr to node of tr we're working on */ struct tracestack_s *dolist; /* pushdown stack of active tr nodes */ int diff,i, j; /* coords in mx (0..N) */ int y; /* counter for states (0..statenum-1) */ int leftdiff; int leftj; int *right_p; int i2, j2; /* what's left unaccounted for at segment end */ int diff2; int end_y; /* index of state that ends segment */ /* Initialize. * Start at i = 1, j = N and work towards diagonal */ InitTrace(&tr, NULL); /* start a trace tree */ dolist = InitTracestack(); /* start a stack for traversing the trace tree */ curr_tr = AttachTrace(tr, NULL, 0, N-1, 0, BEGIN_ST); PushTracestack(dolist, curr_tr); /* Recursion. While there's active nodes in the stack, trace from them. * * This is cribbed from recurse_cvmx(); it's almost the exact reverse. * We know the best score, we just have to figure out where it came from. */ while ((curr_tr = PopTracestack(dolist)) != NULL) { /* get some useful numbers, mostly for clarity */ /* which is important, since we're sort of misusing * fields in the trace structures! */ i = curr_tr->emitl+1; j = curr_tr->emitr+1; y = curr_tr->nodeidx; diff = j - i + 1; /* find out which bifurc/end state terminates this segment */ end_y = y+1; while (icm[end_y].statetype != uBIFURC_ST && icm[end_y].statetype != uEND_ST) end_y++; /* find out i2,j2 that the terminal bifurc/end aligns to */ unpack_tb(btr[y][j][diff], &diff2, &j2); i2 = j2 - diff2 + 1; /* For now, just write out what the traceback looks like. */ printf("Segment from state %d to %d: aligns to %d..%d/%d..%d\n", y, end_y, i, i2-1, j2+1, j); /* push next BEGINs onto stack; they are connected to BIFURC end_y */ if (icm[end_y].statetype == uBIFURC_ST) { if (i2 > j2) { PushTracestack(dolist, AttachTrace(curr_tr, NULL, i2-1, j2-1, icm[end_y].tmx[1], BEGIN_ST)); PushTracestack(dolist, AttachTrace(curr_tr, NULL, i2-1, j2-1, icm[end_y].tmx[0], BEGIN_ST)); } else { leftdiff = diff2; leftj = j2; right_p = bmx[icm[end_y].tmx[1]][j2]; while (leftdiff >= 0) { if (bmx[end_y][j2][diff] == bmx[icm[end_y].tmx[0]][leftj][leftdiff] + *right_p) { printf("found the bifurc: it is %d-%d and %d-%d\n", i2 -1, i2+leftdiff-2, i2 + leftdiff-1, j2-1); PushTracestack(dolist, AttachTrace(curr_tr, NULL, i2 + leftdiff-1, j2-1, icm[end_y].tmx[1], BEGIN_ST)); PushTracestack(dolist, AttachTrace(curr_tr, NULL, i2 -1, i2+leftdiff-2, icm[end_y].tmx[0], BEGIN_ST)); break; } leftdiff--; leftj--; right_p++; } if (leftdiff < 0) Die("bifurc reconstruction failed at ijy %d,%d,%d", i,j,y); } } } /* (while something is in the tracestack) */ FreeTracestack(dolist); *ret_trace = tr; return 1; } #ifdef DEBUG /* Function: print_tb() * * Purpose: Print the two numbers of a packed traceback. */ static void print_tb(int tb) { int i, j; unpack_tb(tb, &i, &j); printf("%d %d\n", i, j); } /* Function: PrintSmallMX() * * Purpose: Debugging output; print out the three-dimensional * auxiliary alignment matrix produced by the * small-memory version. */ static void print_small_mx(FILE *fp, /* open file or just stdout/stderr */ struct istate_s *icm, /* the model to align */ int statenum, /* number of states in icm */ char *seq, /* sequence, 1..N */ int N, /* length of seq */ int ***bmx, /* auxiliary matrix */ TBACK ***btr) /* traceback ptrs for bmx */ { int j, diff, y; /* indices in 3D matrix */ int tbdiff, tbj; /* traceback pointers to a j, diff position */ for (y = 0; y < statenum; y++) if (bmx[y] != NULL) { fprintf(fp, "### B Matrix for state %d, type %d (%s), from node %d\n", y, icm[y].statetype, UstatetypeName(icm[y].statetype), icm[y].nodeidx); fprintf(fp, " "); for (diff = 0; diff <= N; diff++) fprintf(fp, "%6d ", diff); fprintf(fp, "\n"); for (j = 0; j <= N; j++) { fprintf(fp, "%c %3d ", (j > 0) ? seq[j] : (char) '*', j); for (diff = 0; diff <= j; diff++) fprintf(fp, "%6d ", bmx[y][j][diff]); fprintf(fp, "\n "); if (icm[y].statetype == uBEGIN_ST) for (diff = 0; diff <= j; diff++) { unpack_tb(btr[y][j][diff], &tbdiff, &tbj); fprintf(fp, "%3d/%3d ", tbdiff, tbj); } fprintf(fp, "\n"); } fprintf(fp, "\n\n"); } } #endif /* DEBUG */ tRNAscan-SE-2.0/src/iupac.c0000644000543100007160000001044011021467304014663 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* iupac.c * * Globally defines the IUPAC symbols for nucleic acid sequence * Slowly evolving into a repository of globals. Tue Apr 20 1993 */ #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif char squid_version[] = "1.5g"; char squid_date[] = "March 1996"; /* Dayhoff f(i) amino acid occurrence frequencies. From BLAST 1.0.5, NCBI. * In alphabetic order by single-letter code. */ float aafq[20] = { .08713, .03347, .04687, .04953, .03977, .08861, .03362, .03689, .08048, .08536, .01475, .04043, .05068, .03826, .04090, .06958, .05854, .06472, .01049, .02992 }; char aa_alphabet[] = AMINO_ALPHABET; /* aa_index converts to pam's 27x27 scheme */ int aa_index[20] = { 0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 15, 16, 17, 18, 19, 21, 22, 24 }; /* IUPAC code translations */ /* note: sequence chars are UPPER CASE */ struct iupactype iupac[] = { { 'A', 'T', NTA, NTT, }, { 'C', 'G', NTC, NTG, }, { 'G', 'C', NTG, NTC, }, { 'T', 'A', NTT, NTA, }, { 'U', 'A', NTU, NTA, }, { 'N', 'N', NTN, NTN, }, { ' ', ' ', NTGAP, NTGAP, }, { 'R', 'Y', NTR, NTY, }, { 'Y', 'R', NTY, NTR, }, { 'M', 'K', NTM, NTK, }, { 'K', 'M', NTK, NTM, }, { 'S', 'S', NTS, NTS, }, { 'W', 'W', NTW, NTW, }, { 'H', 'D', NTH, NTD, }, { 'B', 'V', NTB, NTV, }, { 'V', 'B', NTV, NTB, }, { 'D', 'H', NTD, NTH, }, }; char *stdcode1[65] = { "K", /* AAA */ "N", /* AAC */ "K", /* AAG */ "N", /* AAU */ "T", /* ACA */ "T", /* ACC */ "T", /* ACG */ "T", /* ACU */ "R", /* AGA */ "S", /* AGC */ "R", /* AGG */ "S", /* AGU */ "I", /* AUA */ "I", /* AUC */ "M", /* AUG */ "I", /* AUU */ "Q", /* CAA */ "H", /* CAC */ "Q", /* CAG */ "H", /* CAU */ "P", /* CCA */ "P", /* CCC */ "P", /* CCG */ "P", /* CCU */ "R", /* CGA */ "R", /* CGC */ "R", /* CGG */ "R", /* CGU */ "L", /* CUA */ "L", /* CUC */ "L", /* CUG */ "L", /* CUU */ "E", /* GAA */ "D", /* GAC */ "E", /* GAG */ "D", /* GAU */ "A", /* GCA */ "A", /* GCC */ "A", /* GCG */ "A", /* GCU */ "G", /* GGA */ "G", /* GGC */ "G", /* GGG */ "G", /* GGU */ "V", /* GUA */ "V", /* GUC */ "V", /* GUG */ "V", /* GUU */ "*", /* UAA */ "Y", /* UAC */ "*", /* UAG */ "Y", /* UAU */ "S", /* UCA */ "S", /* UCC */ "S", /* UCG */ "S", /* UCU */ "*", /* UGA */ "C", /* UGC */ "W", /* UGG */ "C", /* UGU */ "L", /* UUA */ "F", /* UUC */ "L", /* UUG */ "F", /* UUU */ "X", /* unknown */ }; char *stdcode3[65] = { "Lys", /* AAA */ "Asn", /* AAC */ "Lys", /* AAG */ "Asn", /* AAU */ "Thr", /* ACA */ "Thr", /* ACC */ "Thr", /* ACG */ "Thr", /* ACU */ "Arg", /* AGA */ "Ser", /* AGC */ "Arg", /* AGG */ "Ser", /* AGU */ "Ile", /* AUA */ "Ile", /* AUC */ "Met", /* AUG */ "Ile", /* AUU */ "Gln", /* CAA */ "His", /* CAC */ "Gln", /* CAG */ "His", /* CAU */ "Pro", /* CCA */ "Pro", /* CCC */ "Pro", /* CCG */ "Pro", /* CCU */ "Arg", /* CGA */ "Arg", /* CGC */ "Arg", /* CGG */ "Arg", /* CGU */ "Leu", /* CUA */ "Leu", /* CUC */ "Leu", /* CUG */ "Leu", /* CUU */ "Glu", /* GAA */ "Asp", /* GAC */ "Glu", /* GAG */ "Asp", /* GAU */ "Ala", /* GCA */ "Ala", /* GCC */ "Ala", /* GCG */ "Ala", /* GCU */ "Gly", /* GGA */ "Gly", /* GGC */ "Gly", /* GGG */ "Gly", /* GGU */ "Val", /* GUA */ "Val", /* GUC */ "Val", /* GUG */ "Val", /* GUU */ "***", /* UAA */ "Tyr", /* UAC */ "***", /* UAG */ "Tyr", /* UAU */ "Ser", /* UCA */ "Ser", /* UCC */ "Ser", /* UCG */ "Ser", /* UCU */ "***", /* UGA */ "Cys", /* UGC */ "Trp", /* UGG */ "Cys", /* UGU */ "Leu", /* UUA */ "Phe", /* UUC */ "Leu", /* UUG */ "Trp", /* UUU */ "XXX", /* unknown */ }; tRNAscan-SE-2.0/src/viterbi.c0000644000543100007160000004500411021467306015234 0ustar pchanlowelab/* viterbi.c * for 2.0: SRE, Tue Sep 28 09:15:07 1993 * from 1.0: SRE, Wed Jun 30 17:42:44 1993 * as revised Tue Aug 24 12:06:12 1993: integer two-matrix version * * Implementation of the three-dimensional dynamic programming * algorithm for aligning a covariance model to a sequence. * * To optimize memory access patterns, the score storage is implemented * as a two-matrix version. amx is the * main storage. bmx is a smaller auxiliary matrix with a different * access pattern, holding scores of BEGIN state alignments; it * is used when calculating BIFURC scores. * * amx is [j = 0..N] [diff = 0..j] [y = 0..statenum] * diff == 0 is for off-diagonal boundary conditions (this is why diff is shifted +1) * diff == 1 is for the diagonal, i==j * * bmx is [y = 0..statenum] [j = 0..N] [ diff = 0..j] * a j,diff matrix exists only where y is a BEGIN state * * The 2.0 implementation allows variable storage per node rather * than storing and calculating a fixed max number of states per node, * which should save up to 2x in both time and space. * * An optimization is made which requires END states to be explicitly * added, so statenum (the number of states in the integer model) * is *inclusive* of ENDs. */ #include #include #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #ifdef DEBUG #include #endif static int allocate_mx(struct istate_s *icm,int statenum, int seqlen, int ****ret_amx, int ****ret_bmx); static int init_mx(struct istate_s *icm, int statenum, int N, int ***amx, int ***bmx); static int recurse_mx(struct istate_s *icm, int statenum, char *seq, int N, int ***amx, int ***bmx); static int trace_mx(struct istate_s *icm, char *seq, int N, int ***amx, int ***bmx, struct trace_s **ret_tr); static void free_mx(int ***amx, int ***bmx, int statenum, int seqlen); /* Function: ViterbiAlign() * * Purpose: Align a sequence to a model, using the alignment * algorithm. Return the score of the alignment and * the traceback. * * Args: icm - the model to align sequence to * statenum - # of states in the model * seq - sequence to align model to * ret_score - RETURN: global alignment score * ret_trace - RETURN: traceback tree * * Return: 1 on success, 0 on failure. */ int ViterbiAlign(struct istate_s *icm, int statenum, char *seq, double *ret_score, struct trace_s **ret_trace) { int ***amx; /* the main score matrix */ int ***bmx; /* the BEGIN score matrix */ int N; /* length of sequence */ N = strlen(seq); seq--; /* convert to 1..N. Ugh! */ if (! allocate_mx(icm, statenum, N, &amx, &bmx)) return 0; #ifdef DEBUG printf("allocated matrices\n"); #endif if (! init_mx(icm, statenum, N, amx, bmx)) return 0; #ifdef DEBUG printf("matrices initialized\n"); #endif if (! recurse_mx(icm, statenum, seq, N, amx, bmx)) return 0; #ifdef DEBUG printf("recursion finished\n"); PrintViterbiAMX(stdout, icm, statenum, seq, N, amx); #endif *ret_score = ((double) bmx[0][N][N] / INTPRECISION); #ifdef DEBUG printf("have a score of %.2f, starting traceback\n", *ret_score); #endif if (! trace_mx(icm, seq, N, amx, bmx, ret_trace)) return 0; #ifdef DEBUG printf("trace complete\n"); PrintTrace(stdout, *ret_trace); #endif free_mx(amx, bmx, statenum, N); #ifdef SRE_REMOVED /* OK, boys, crank up the MasPar DPU. * 24 bytes = 6 addresses passed * 4 bytes/address (always right?) * MPViterbiAlign() copies ret_score out, but doesn't do anything * with the traceback yet */ callRequest(MPViterbiAlign, 24, icm, &statenum, seq, &N, ret_score, ret_trace); #endif /* MASPAR */ return 1; } /* Function: allocate_cvmx() * * Purpose: Malloc space for the score matrices. * amx is indexed as j, i, y. * bmx is indexed as k, j, i. * In the two sequence dimensions j, i they are * diagonal (+1 off diagonal) matrices with * rows j = 0..N, i = 1..j+1. * In the node dimension k bmx is k = 0..M. * In the state dimension y amx is y = 0..numstates. * * Args: icm - the int, log-odds, state-based model * statenum - number of states in model * seqlen - length of sequence * ret_amx - RETURN: main score matrix * ret_bmx - RETURN: BEGIN score matrix * * Return: Ptr to allocated scoring matrix, or * dies and exits. */ static int allocate_mx(struct istate_s *icm, int statenum, int seqlen, int ****ret_amx, int ****ret_bmx) { int ***amx; int ***bmx; int diag, j, y; /* Main matrix, amx: fastest varying index is y (j,i,y) */ /* malloc for j = 0..seqlen rows */ if ((amx = (int ***) malloc ((seqlen + 1)* sizeof(int **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (j = 0; j <= seqlen; j++) /* loop over rows j = 0..N */ { /* malloc for diag = 0..j cols */ if ((amx[j] = (int **) malloc ((j + 1) * sizeof(int *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* loop over cols diag = 0..j */ for (diag = 0; diag <= j; diag++) /* malloc for y = 0..statenum-1 decks */ if ((amx[j][diag] = (int *) malloc ((statenum) * sizeof (int))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } /* BEGIN auxiliary matrix: fastest varying index is diag (y,j,diag) */ /* 0..statenum-1 decks */ if ((bmx = (int ***) malloc (statenum * sizeof(int **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (y = 0; y < statenum; y++) { bmx[y] = NULL; if (icm[y].statetype == uBEGIN_ST) { if ((bmx[y] = (int **) malloc ((seqlen+1) * sizeof(int *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (j = 0; j <= seqlen; j++) if ((bmx[y][j] = (int *) malloc ((j+1) * sizeof(int))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } } *ret_amx = amx; *ret_bmx = bmx; return 1; } /* Function: free_mx() * * Purpose: Free the space allocated to the two scoring matrices. * Precisely mirrors the allocations above in allocate_cvmx(). * * Return: (void) */ static void free_mx(int ***amx, int ***bmx, int statenum, int seqlen) { int diag, j, y; /* Free the main matrix, amx */ for (j = 0; j <= seqlen; j++) { for (diag = 0; diag <= j; diag++) free(amx[j][diag]); free(amx[j]); } free(amx); /* Free the auxiliary BEGIN matrix, bmx */ for (y = 0; y < statenum; y++) if (bmx[y] != NULL) { for (j = 0; j <= seqlen; j++) free(bmx[y][j]); free(bmx[y]); } free(bmx); } /* Function: init_mx() * * Purpose: Initialization of the scoring matrices. We initialize the off-diagonal, * the diagonal, and the "floor" (end states) of the cube. * * Return: 1 on success, 0 on failure. */ static int init_mx(struct istate_s *icm, /* integer model */ int statenum, /* number of states in icm */ int N, /* length of seq */ int ***amx, int ***bmx) { int diag, j, y; /* counters for indices over the cvmx */ int ynext; /* index of next state k+1 */ int *beam; /* z-axis vector of numbers in amx */ /* Init the whole amx to -Infinity. We do this with memcpy, trying * to be fast. We fill in j=0,diag=0 by hand, then memcpy() the other * columns. */ for (y = 0; y < statenum; y++) amx[0][0][y] = NEGINFINITY; for (j = 1; j <= N; j++) for (diag = 0; diag <= j; diag++) memcpy(amx[j][diag], amx[0][0], statenum * sizeof(int)); /* Init the whole bmx to -Inf. We know state 0 is a begin (it's ROOT), so we * start there, and memcpy rows as needed. */ for (diag = 0; diag <= N; diag++) bmx[0][N][diag] = NEGINFINITY; for (j = 0; j < N; j++) memcpy(bmx[0][j], bmx[0][N], (j+1) * sizeof(int)); for (y = 1; y < statenum; y++) if (bmx[y] != NULL) for (j = 0; j <= N; j++) memcpy(bmx[y][j], bmx[0][N], (j+1) * sizeof(int)); /* Init the off-diagonal (j = 0..N; diag == 0) with -log P scores. * End state = 0; * del, bifurc states are calc'ed * begin states same as del's */ for (j = 0; j <= N; j++) for (y = statenum-1; y >= 0; y--) { if (icm[y].statetype == uEND_ST) amx[j][0][y] = 0; else if (icm[y].statetype == uBIFURC_ST) amx[j][0][y] = bmx[icm[y].tmx[0]][j][0] + bmx[icm[y].tmx[1]][j][0]; else if (icm[y].statetype == uDEL_ST || icm[y].statetype == uBEGIN_ST) { /* only calc DEL-DEL and BEGIN-DEL transitions. Since * we optimized the state transition tables, removing * the unused ones, we don't know where the number * for "to DEL" is! But we can find it, because it'll * be the connection to a non-infinite score */ beam = amx[j][0] + y + icm[y].offset; for (ynext = 0; ynext < icm[y].connectnum; ynext++) { if (*beam != NEGINFINITY) amx[j][0][y] = *beam + icm[y].tmx[ynext]; beam++; } /* make a copy into bmx if y is a BEGIN */ if (icm[y].statetype == uBEGIN_ST) bmx[y][j][0] = amx[j][0][y]; } } return 1; } /* Function: recurse_mx() * * Purpose: Carry out the fill stage of the dynamic programming * algorithm. * * Returns: 1 on success, 0 on failure. */ static int recurse_mx(struct istate_s *icm, /* integer, state-form model */ int statenum, /* number of states in icm */ char *seq, /* sequence, 1..N */ int N, /* length of seq */ int ***amx, /* main scoring matrix */ int ***bmx) /* bifurc scoring matrix */ { int i, j, y; /* indices for 4 dimensions */ int diff; /* loop counter for difference: diff = j-i + 1 */ int symi, symj; /* symbol indices for seq[i], seq[j] */ int sc; /* tmp for a score */ int ynext; /* index of next state y */ int *beam; /* ptr to a beam (z-axis vector) */ int leftdiff; /* diff coord of BEGIN_L of a bifurc */ int leftj; /* j coord of BEGIN_L of a bifurc */ int **left_p; /* pointer into whole 2D deck of BEGINL's of a bifurc */ int *right_p; /* ptr into row of BEGIN_R's of a bifurc */ int *scp; /* score pointer: ptr into beam of scores being calc'ed */ struct istate_s *st; /* state pointer: ptr at current state in icm */ int *tmx; int emitsc; for (j = 1; j <= N; j++) { symj = SymbolIndex(seq[j]); for (diff = 1; diff <= j; diff++) { i = j - diff + 1; if (i < 1) break; symi = SymbolIndex(seq[i]); #ifdef DEBUG assert(symi >= 0 && symi < ALPHASIZE); assert(symj >= 0 && symj < ALPHASIZE); #endif scp = &amx[j][diff][statenum-1]; st = &icm[statenum-1]; for (y = statenum-1; y >= 0; y--, scp--, st--) { /* loop over states */ if (st->statetype != uBIFURC_ST) /* a normal (non-BIFURC) state */ { /* Connect the "beam" pointer to the appropriate * starting place in the ynext scores we're connecting * y to */ switch (st->statetype) { case uBEGIN_ST: case uDEL_ST: beam = amx[j][diff]; emitsc = 0; break; case uMATP_ST: if (diff == 1) continue; beam = amx[j-1][diff-2]; emitsc = st->emit[symi * ALPHASIZE + symj]; break; case uMATR_ST: case uINSR_ST: beam = amx[j-1][diff-1]; emitsc = st->emit[symj]; break; case uMATL_ST: case uINSL_ST: beam = amx[j][diff-1]; emitsc = st->emit[symi]; break; case uEND_ST: continue; default: Die("no such state type %d", st->statetype); } beam += y + st->offset; tmx = st->tmx; /* Init for ynext == 0 case */ *scp = *beam + *tmx; /* Calculate remaining cases */ for (ynext = 1; ynext < st->connectnum; ynext++) { beam++; tmx++; if (*beam > *scp) { sc = *beam + *tmx; if (sc > *scp) *scp = sc; } } /* Add emission scores now */ *scp += emitsc; /* Make a copy into bmx if necessary */ if (st->statetype == uBEGIN_ST) bmx[y][j][diff] = *scp; } /* end block of normal state stuff */ else /* a BIFURC state */ { leftdiff = diff; leftj = j; right_p = bmx[st->tmx[1]][j]; left_p = bmx[st->tmx[0]]; /* init w/ case that left branch emits it all */ *scp = left_p[leftj][leftdiff] + *right_p; while (leftdiff > 0) { leftdiff--; leftj--; right_p++; sc = left_p[leftj][leftdiff] + *right_p; if (sc > *scp) *scp = sc; } } } /* end loop over states */ } /* end loop over diff */ } /* end loop over j */ return 1; } /* Function: trace_cvmx() * * Purpose: Trace stage of the dynamic programming: starting * at j=N, i=1, k=0/BEGIN, trace back the optimal * path. Returns a binary tree, ret_trace. * Caller is reponsible for free'ing ret_trace. */ static int trace_mx(struct istate_s *icm, /* the model to align */ char *seq, /* sequence to align it to 1..N */ int N, int ***amx, int ***bmx, struct trace_s **ret_trace) /* RETURN: the traceback tree */ { struct trace_s *tr; /* the traceback tree under construction */ struct trace_s *curr_tr; /* ptr to node of tr we're working on */ struct tracestack_s *dolist; /* pushdown stack of active tr nodes */ int diff,i, j; /* coords in mx (0..N) */ int y; /* counter for states (0..statenum-1) */ int ynext; /* holds "k+1" value */ int symi, symj; /* array indices for left, right symbols */ int leftdiff; int leftj; int *right_p; int *beam; int conni, connj; int sc; /* Initialize. * Start at i = 1, j = N and work towards diagonal */ InitTrace(&tr, NULL); /* start a trace tree */ dolist = InitTracestack(); /* start a stack for traversing the trace tree */ curr_tr = AttachTrace(tr, NULL, 0, N-1, 0, uBEGIN_ST); PushTracestack(dolist, curr_tr); /* Recursion. While there's active nodes in the stack, trace from them. * * This is cribbed from recurse_cvmx(); it's almost the exact reverse. * We know the best score, we just have to figure out where it came from. */ while ((curr_tr = PopTracestack(dolist)) != NULL) { /* get some useful numbers, mostly for clarity */ /* which is important, since we're sort of misusing * fields in the trace structures! */ i = curr_tr->emitl+1; j = curr_tr->emitr+1; y = curr_tr->nodeidx; diff = j - i + 1; /* During use here, nodeidx field is used to hold a *state* index, * when we leave, everything must look like the rest of the package * expects, so we clean up here. */ curr_tr->nodeidx = icm[y].nodeidx; /* We used an END state here. * (We'd better be near the diagonal!) * We're done here. */ if (icm[y].statetype == uEND_ST) { if (i <= j) Warn("trace: didn't reach off-diag, stop at i=%d j=%d y=%d", i,j,y); curr_tr->nodeidx = -1; continue; } else if (icm[y].statetype == uBIFURC_ST) /* bifurc state */ { /* We used a BIFURC state here. * It came from two branches. Redo the recurse_cvmx() * calculation to find them. */ if (i > j) { PushTracestack(dolist, AttachTrace(curr_tr, NULL, i-1, j-1, icm[y].tmx[1], uBEGIN_ST)); PushTracestack(dolist, AttachTrace(curr_tr, NULL, i-1, j-1, icm[y].tmx[0], uBEGIN_ST)); } else { leftdiff = diff; leftj = j; right_p = bmx[icm[y].tmx[1]] [j]; while (leftdiff >= 0) { if (amx[j][diff][y] == bmx[icm[y].tmx[0]][leftj][leftdiff] + *right_p) { PushTracestack(dolist, AttachTrace(curr_tr, NULL, i + leftdiff-1, j-1, icm[y].tmx[1], uBEGIN_ST)); PushTracestack(dolist, AttachTrace(curr_tr, NULL, i -1, i+leftdiff-2, icm[y].tmx[0], uBEGIN_ST)); break; } leftdiff--; leftj--; right_p++; } if (leftdiff < 0) Die("bifurc reconstruction failed at ijy %d,%d,%d", i,j,y); } } else /* a normal (non-BIFURC) state */ { if (i > 0 && i <= N) symi = SymbolIndex(seq[i]); if (j > 0 && j <= N) symj = SymbolIndex(seq[j]); switch (icm[y].statetype) { case uBEGIN_ST: case uDEL_ST: beam = amx[j][diff]; conni = i; connj = j; break; case uMATP_ST: beam = amx[j-1][diff-2]; conni = i+1; connj = j-1; break; case uMATR_ST: case uINSR_ST: beam = amx[j-1][diff-1]; conni = i; connj = j-1; break; case uMATL_ST: case uINSL_ST: beam = amx[j][diff-1]; conni = i+1; connj = j; break; default: Die("no such state type %d", icm[y].statetype); } beam += y + icm[y].offset; /* Calculate the score we'll try to match, by subtracting emission score as needed */ sc = amx[j][diff][y]; switch (icm[y].statetype) { case uBEGIN_ST: case uDEL_ST: break; case uMATP_ST: sc -= icm[y].emit[symi * ALPHASIZE + symj]; break; case uMATR_ST: case uINSR_ST: sc -= icm[y].emit[symj]; break; case uMATL_ST: case uINSL_ST: sc -= icm[y].emit[symi]; break; default: Die("no such state type %d", icm[y].statetype); } /* find the right connection */ for (ynext = 0; ynext < icm[y].connectnum; ynext++, beam++) if (sc == *beam + icm[y].tmx[ynext]) { PushTracestack(dolist, AttachTrace(curr_tr, NULL, conni-1, connj-1, ynext + y + icm[y].offset, icm[ynext + y + icm[y].offset].statetype)); break; } if (ynext == icm[y].connectnum) { Warn("can't continue traceback"); return 0; } } /* (a normal statetype) */ } /* (while something is in the tracestack) */ FreeTracestack(dolist); *ret_trace = tr; return 1; } tRNAscan-SE-2.0/src/version.h0000644000543100007160000000070611021467306015262 0ustar pchanlowelab/* version.h * SRE, Mon Sep 6 09:32:36 1993 * * During a real build, these won't be used at all -- they'll * be overridden from the Makefile. This is only used during * manual compilations and to keep lint quiet. It also might * make a good record of the revisions the package goes through. * */ /* #define DEBUG*/ /* turn all debugging output on */ #ifndef RELEASE #define RELEASE "2.4.4" #define RELEASEDATE "January 1996" #endif tRNAscan-SE-2.0/src/squid.h0000644000543100007160000003244611021467306014730 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ #ifndef SQUIDH_INCLUDED #define SQUIDH_INCLUDED /* squid.h * last modified Sun Aug 15 12:05:58 1993 * * Header file for my library of sequence functions. * */ #include #include #include /* Library version info is made available as a global to * any interested program. These are defined in iupac.c * with the other globals. */ extern char squid_version[]; extern char squid_date[]; /**************************************************** * Error codes returned by squid library functions ****************************************************/ #define SQERR_OK 0 /* no error */ #define SQERR_UNKNOWN 1 /* generic error, unidentified */ #define SQERR_NODATA 2 /* unexpectedly NULL stream */ #define SQERR_MEM 3 /* malloc or realloc failed */ #define SQERR_NOFILE 4 /* file not found */ #define SQERR_FORMAT 5 /* file format not recognized */ #define SQERR_PARAMETER 6 /* bad parameter passed to func */ #define SQERR_DIVZERO 7 /* error in sre_math.c */ extern int squid_errno; /**************************************************** * Single sequence information ****************************************************/ #define SQINFO_NAMELEN 64 #define SQINFO_DESCLEN 128 struct seqinfo_s { int flags; /* what extra data are available */ char name[SQINFO_NAMELEN];/* up to 63 characters of name */ char id[SQINFO_NAMELEN]; /* up to 63 char of database identifier */ char acc[SQINFO_NAMELEN]; /* up to 63 char of database accession # */ char desc[SQINFO_DESCLEN];/* up to 127 char of description */ int len; /* length of this seq */ int start; /* (1..len) start position on source seq */ int stop; /* (1..len) end position on source seq */ int olen; /* original length of source seq */ int type; /* kRNA, kDNA, kAmino, or kOther */ float weight; /* weight on sequence */ char *ss; /* 0..len-1 secondary structure string */ char *sa; /* 0..len-1 % side chain surface access. */ }; typedef struct seqinfo_s SQINFO; #define SQINFO_NAME (1 << 0) #define SQINFO_ID (1 << 1) #define SQINFO_ACC (1 << 2) #define SQINFO_DESC (1 << 3) #define SQINFO_START (1 << 4) #define SQINFO_STOP (1 << 5) #define SQINFO_LEN (1 << 6) #define SQINFO_TYPE (1 << 7) #define SQINFO_WGT (1 << 8) #define SQINFO_OLEN (1 << 9) #define SQINFO_SS (1 << 10) #define SQINFO_SA (1 << 12) /**************************************************** * Sequence i/o: originally from Don Gilbert's readseq ****************************************************/ /* buffer size for reading in lines from sequence files*/ #define LINEBUFLEN 4096 /* sequence types parsed by Seqtype() */ #define kOtherSeq 0 #define kDNA 1 #define kRNA 2 #define kAmino 3 /* Sequence file formats recognized */ #define kUnknown 0 /* format not determinable */ #define kIG 1 #define kGenBank 2 #define kNBRF 3 #define kEMBL 4 #define kGCG 5 #define kStrider 6 #define kPearson 7 #define kZuker 8 #define kIdraw 9 /* idraw-style PostScript (write only) */ #define kSelex 10 /* my flat text alignment format */ #define kMSF 11 /* GCG MSF multiple alignment format */ #define kPIR 12 /* PIR-CODATA format */ #define kRaw 13 /* unformatted, raw sequence (output only) */ #define kSquid 14 /* my sequence database format */ #define kXPearson 15 /* my extended FASTA format */ #define kGCGdata 16 /* GCG data library format */ #define kClustal 17 /* Clustal V or W multiple alignment format */ #define kMinFormat 1 /* SRE: kUnknown doesn't count */ #define kMaxFormat 17 #define kNumFormats (kMaxFormat + 1) #define kNoformat -1 /* format not tested */ struct ReadSeqVars { FILE *f; char sbuffer[LINEBUFLEN]; /* current line we're working on */ int seqlen; int maxseq; int dash_equals_n; /* a hack - affects EMBL reading, to deal with EMBL */ char *seq; SQINFO *sqinfo; /* name, id, etc. */ char *sp; }; typedef struct ReadSeqVars SQFILE; /**************************************************** * Database indexing (GSI index file format) ****************************************************/ /* A GSI (generic sequence index) file is composed of * recnum + nfiles + 1 records. Each record contains * three fields; key, file number, and disk offset. * Record 0 contains: * [ "GSI" ] [ nfiles ] [ recnum ] * Records 1..nfiles map file names to file numbers, and contain: * [ filename ] [ file number, 1..nfiles ] [ 0 (unused) ] * Records nfiles+1 to recnum+nfiles+1 provide disk offset * and file number indices for every key: * [ key ] [ file number ] [ offset] */ struct gsi_s { FILE *gsifp; /* open GSI index file */ long recnum; /* number of records */ short nfiles; /* number of files */ }; typedef struct gsi_s GSIFILE; /* Used for GSI (general sequence index) files, for rapid fetching * from databases. A GSI record contains: * [ key name] [file number] [disk offset] */ #define GSI_RECSIZE (32 * sizeof(char) + sizeof(short) + sizeof(long)) #define GSI_KEYSIZE (32 * sizeof(char)) /**************************************************** * Sequence alphabet: see also iupac.c ****************************************************/ /* IUPAC symbols defined globally in iupac.c */ struct iupactype { char sym; /* character representation */ char symcomp; /* complement (regular char */ char code; /* my binary rep */ char comp; /* binary encoded complement */ }; extern struct iupactype iupac[]; #define IUPACSYMNUM 17 extern char *stdcode1[]; /* 1-letter amino acid translation code */ extern char *stdcode3[]; /* 3-letter amino acid translation code */ extern float aafq[]; /* amino acid occurrence frequencies */ extern char aa_alphabet[]; /* amino acid alphabet */ extern int aa_index[]; /* convert 0..19 indices to 0..26 */ /* valid symbols in IUPAC code */ #define NUCLEOTIDES "ACGTUNRYMKSWHBVDacgtunrymkswhbvd" #define AMINO_ALPHABET "ACDEFGHIKLMNPQRSTVWY" #define DNA_ALPHABET "ACGT" #define RNA_ALPHABET "ACGU" #define WHITESPACE " \t\n" #define isgap(c) ((c) == ' ' || (c) == '.' || (c) == '_' || (c) == '-') /**************************************************** * Alignment information ****************************************************/ /* Structure: aliinfo_s * * Purpose: Optional information returned from an alignment file. * * flags: always used. Flags for which info is valid/alloced. * * alen: always returned. Alignments are always flushed right * with gaps so that all aseqs are the same length, alen. * Available for all alignment formats. * * cs: 0..alen-1, just like the alignment. Contains single-letter * secondary structure codes for consensus structure; "<>^+" * for RNA, "EHL." for protein. May be NULL if unavailable * from seqfile. Only available for SELEX format files. * * rf: 0..alen-1, just like the alignment. rf is an arbitrary string * of characters, used for annotating columns. Blanks are * interpreted as non-canonical columns and anything else is * considered canonical. Only available from SELEX format files. * * sqinfo: always returned. Array of 0..nseq-1 * per-sequence information structures, carrying * name, id, accession, coords, and weight. * */ struct aliinfo_s { int flags; /* flags for what info is valid */ int alen; /* length of alignment (columns) */ char au[64]; /* "author" information */ char *cs; /* consensus secondary structure string */ char *rf; /* reference coordinate system */ struct seqinfo_s *sqinfo; /* name, id, coord info for each sequence */ }; typedef struct aliinfo_s AINFO; #define AINFO_ALEN (1 << 0) #define AINFO_AUTH (1 << 1) #define AINFO_CS (1 << 2) #define AINFO_RF (1 << 3) /**************************************************** * Cluster analysis and phylogenetic tree support ****************************************************/ /* struct phylo_s - a phylogenetic tree * * For N sequences, there will generally be an array of 0..N-2 * phylo_s structures. [0] is the root. The indexes of left and * right children are somewhat confusing so be careful. The * indexes can have values of 0..2N-2. If they are 0..N-1, they * represent pointers to individual sequences. If they are * >= N, they represent pointers to a clustree_s structure * at (index - N). */ struct phylo_s { int parent; /* index of parent, N..2N-2, or -1 for root */ int left; /* index of one of the branches, 0..2N-2 */ int right; /* index of other branch, 0..2N-2 */ float diff; /* difference score between seqs */ float lblen; /* left branch length */ float rblen; /* right branch length */ char *is_in; /* 0..N flag array, 1 if seq included */ int incnum; /* number of seqs included at this node */ }; /* Strategies for cluster analysis; cluster by mean distance, * minimum distance, or maximum distance. */ enum clust_strategy { CLUSTER_MEAN, CLUSTER_MAX, CLUSTER_MIN }; /**************************************************** * Generic data structure support ****************************************************/ /* a struct intstack_s implements a pushdown stack for storing * single integers. */ struct intstack_s { int data; struct intstack_s *nxt; }; /**************************************************** * Binary nucleotide alphabet support ****************************************************/ /* Binary encoding of the IUPAC code for nucleotides * * four-bit "word", permitting rapid degenerate matching * A C G T/U * 0 0 1 0 */ #define NTA 8 #define NTC 4 #define NTG 2 #define NTT 1 #define NTU 1 #define NTN 15 /* A|C|G|T */ #define NTR 10 /* A|G */ #define NTY 5 /* C|T */ #define NTM 12 /* A|C */ #define NTK 3 /* G|T */ #define NTS 6 /* C|G */ #define NTW 9 /* A|T */ #define NTH 13 /* A|C|T */ #define NTB 7 /* C|G|T */ #define NTV 14 /* A|C|G */ #define NTD 11 /* A|G|T */ #define NTGAP 16 /* GAP */ #define NTEND 0 /* null string terminator */ /* ntmatch(): bitwise comparison of two nuc's * note that it's sensitive to the order; * probe may be degenerate but target should not be */ #define ntmatch(probe, target) ((probe & target) == target) /**************************************************** * Support for a portable, flexible Getopt() ****************************************************/ /* Structure: opt_s * * Structure for declaring options to a main(). */ struct opt_s { char *name; /* name of option, e.g. "--option1" or "-o" */ int single; /* TRUE if a single letter option */ int argtype; /* for typechecking, e.g. ARG_INT */ }; /* acceptable argtype's... */ #define ARG_NONE 0 /* no argument */ #define ARG_INT 1 /* something that atoi() can grok */ #define ARG_FLOAT 2 /* something that atof() can grok */ #define ARG_CHAR 3 /* require single character or digit */ #define ARG_STRING 4 /* anything goes */ /**************************************************** * Miscellaneous macros and defines ****************************************************/ #define CHOOSE(a) ((int) (sre_random() * (a))) /* must declare swapfoo to use SWAP() */ #define SWAP(a,b) {swapfoo = b; b = a; a = swapfoo;} #define Free2DArray(ptr, n) \ { int fooidx;\ if (ptr != NULL) { \ for (fooidx = 0; fooidx < (n); fooidx++) if (ptr[fooidx] != NULL) free(ptr[fooidx]);\ free(ptr);\ } } #define ScalarsEqual(a,b) (fabs((a)-(b)) < 1e-7) #ifndef MIN #define MIN(a,b) ((ab)?a:b) #endif #ifndef TRUE #define TRUE 1 #endif #ifndef True #define True 1 #endif #ifndef FALSE #define FALSE 0 #endif #ifndef False #define False 0 #endif /* someday, Sun Microsystems will conform to ANSI... */ #ifndef EXIT_SUCCESS #define EXIT_SUCCESS 0 #define EXIT_FAILURE 1 #endif #include "sqfuncs.h" /* squid function declarations */ #endif /* SQUIDH_INCLUDED */ tRNAscan-SE-2.0/src/shuffle_main.c0000644000543100007160000000553611021467311016232 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* main for shuffle * * shuffle - generate shuffled sequences * Mon Feb 26 16:56:08 1996 */ #include #include #include #include "squid.h" struct opt_s OPTIONS[] = { { "-h", TRUE, ARG_NONE }, /* help */ { "-n", TRUE, ARG_INT }, /* number of shuffled seqs per input seq */ { "--seed", FALSE, ARG_INT }, /* set the random number seed */ }; #define NOPTIONS (sizeof(OPTIONS) / sizeof(struct opt_s)) char usage[] = "Usage: shuffle [-options] \n\ Generate shuffled copies of input sequences.\n\ Available options:\n\ -h : help; print version and usage info\n\ -n : make shuffles per input seq (default 1)\n\ --seed : set random number seed to \n\ "; int main(int argc, char **argv) { char *seqfile; /* name of sequence file */ SQFILE *dbfp; /* open sequence file */ int fmt; /* format of seqfile */ char *seq; /* sequence */ SQINFO sqinfo; /* additional sequence info */ char *shuff; /* shuffled sequence */ int num; /* number to generate */ int seed; /* random number generator seed */ int i; char *optname; /* option name */ char *optarg; /* option argument (or NULL) */ int optind; /* index of next argv[] */ /*********************************************** * Parse command line ***********************************************/ num = 1; seed = (int) time ((time_t *) NULL); while (Getopt(argc, argv, OPTIONS, NOPTIONS, usage, &optind, &optname, &optarg)) { if (strcmp(optname, "-n") == 0) { num = atoi(optarg); } else if (strcmp(optname, "--seed") == 0) { seed = atoi(optarg); } else if (strcmp(optname, "-h") == 0) { printf("shuffle %s, %s\n%s\n", squid_version, squid_date, usage); exit(EXIT_SUCCESS); } } if (argc - optind != 1) Die("%s\n", usage); seqfile = argv[optind]; sre_srandom(seed); if (! SeqfileFormat(seqfile, &fmt, NULL)) Die("Failed to determine format of file %s", seqfile); if ((dbfp = SeqfileOpen(seqfile, fmt, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); while (ReadSeq(dbfp, fmt, &seq, &sqinfo)) { shuff = (char *) MallocOrDie ((sqinfo.len + 1) * sizeof(char)); for (i = 0; i < num; i++) { StrShuffle(shuff, seq); WriteSeq(stdout, kPearson, shuff, &sqinfo); } free(shuff); FreeSequence(seq, &sqinfo); } SeqfileClose(dbfp); return 0; } tRNAscan-SE-2.0/src/sqerror.c0000644000543100007160000000271111021467305015262 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* sqerror.c * * error handling for the squid library */ /* a global errno equivalent */ int squid_errno; #include #include #include #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: Die() * * Purpose: Print an error message and die. The arguments * are formatted exactly like arguments to printf(). * * Return: None. Exits the program. */ /* VARARGS0 */ int Die(char *format, ...) { va_list argp; /* format the error mesg */ fprintf(stderr, "FATAL: "); va_start(argp, format); vfprintf(stderr, format, argp); va_end(argp); fprintf(stderr, "\n"); fflush(stderr); /* exit */ exit(1); /*NOTREACHED*/ return 1; /* fool lint */ } /* Function: Warn() * * Purpose: Print an error message and return. The arguments * are formatted exactly like arguments to printf(). * * Return: (void) */ /* VARARGS0 */ int Warn(char *format, ...) { va_list argp; /* format the error mesg */ fprintf(stderr, "WARNING: "); va_start(argp, format); vfprintf(stderr, format, argp); va_end(argp); fprintf(stderr, "\n"); fflush(stderr); return 1; } tRNAscan-SE-2.0/src/sre_math.c0000644000543100007160000002622111021467305015371 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* sre_math.c * * Portability for and extensions to C math library. * */ #include #include #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static int sre_reseed = 0; /* TRUE to reinit sre_random() */ static int sre_randseed = 666; /* default seed for sre_random() */ /* Function: Gaussrandom() * * Pick a Gaussian-distributed random variable * with some mean and standard deviation, and * return it. * * Based on RANLIB.c public domain implementation. * Thanks to the authors, Barry W. Brown and James Lovato, * University of Texas, M.D. Anderson Cancer Center, Houston TX. * Their implementation is from Ahrens and Dieter, "Extensions * of Forsythe's method for random sampling from the normal * distribution", Math. Comput. 27:927-937 (1973). * * Impenetrability of the code is to be blamed on its FORTRAN/f2c lineage. * */ float Gaussrandom(float mean, float stddev) { static float a[32] = { 0.0,3.917609E-2,7.841241E-2,0.11777,0.1573107,0.1970991,0.2372021,0.2776904, 0.3186394,0.36013,0.4022501,0.4450965,0.4887764,0.5334097,0.5791322, 0.626099,0.6744898,0.7245144,0.7764218,0.8305109,0.8871466,0.9467818, 1.00999,1.077516,1.150349,1.229859,1.318011,1.417797,1.534121,1.67594, 1.862732,2.153875 }; static float d[31] = { 0.0,0.0,0.0,0.0,0.0,0.2636843,0.2425085,0.2255674,0.2116342,0.1999243, 0.1899108,0.1812252,0.1736014,0.1668419,0.1607967,0.1553497,0.1504094, 0.1459026,0.14177,0.1379632,0.1344418,0.1311722,0.128126,0.1252791, 0.1226109,0.1201036,0.1177417,0.1155119,0.1134023,0.1114027,0.1095039 }; static float t[31] = { 7.673828E-4,2.30687E-3,3.860618E-3,5.438454E-3,7.0507E-3,8.708396E-3, 1.042357E-2,1.220953E-2,1.408125E-2,1.605579E-2,1.81529E-2,2.039573E-2, 2.281177E-2,2.543407E-2,2.830296E-2,3.146822E-2,3.499233E-2,3.895483E-2, 4.345878E-2,4.864035E-2,5.468334E-2,6.184222E-2,7.047983E-2,8.113195E-2, 9.462444E-2,0.1123001,0.136498,0.1716886,0.2276241,0.330498,0.5847031 }; static float h[31] = { 3.920617E-2,3.932705E-2,3.951E-2,3.975703E-2,4.007093E-2,4.045533E-2, 4.091481E-2,4.145507E-2,4.208311E-2,4.280748E-2,4.363863E-2,4.458932E-2, 4.567523E-2,4.691571E-2,4.833487E-2,4.996298E-2,5.183859E-2,5.401138E-2, 5.654656E-2,5.95313E-2,6.308489E-2,6.737503E-2,7.264544E-2,7.926471E-2, 8.781922E-2,9.930398E-2,0.11556,0.1404344,0.1836142,0.2790016,0.7010474 }; static long i; static float snorm,u,s,ustar,aa,w,y,tt; u = sre_random(); s = 0.0; if(u > 0.5) s = 1.0; u += (u-s); u = 32.0*u; i = (long) (u); if(i == 32) i = 31; if(i == 0) goto S100; /* * START CENTER */ ustar = u-(float)i; aa = *(a+i-1); S40: if(ustar <= *(t+i-1)) goto S60; w = (ustar-*(t+i-1))**(h+i-1); S50: /* * EXIT (BOTH CASES) */ y = aa+w; snorm = y; if(s == 1.0) snorm = -y; return (stddev*snorm + mean); S60: /* * CENTER CONTINUED */ u = sre_random(); w = u*(*(a+i)-aa); tt = (0.5*w+aa)*w; goto S80; S70: tt = u; ustar = sre_random(); S80: if(ustar > tt) goto S50; u = sre_random(); if(ustar >= u) goto S70; ustar = sre_random(); goto S40; S100: /* * START TAIL */ i = 6; aa = *(a+31); goto S120; S110: aa += *(d+i-1); i += 1; S120: u += u; if(u < 1.0) goto S110; u -= 1.0; S140: w = u**(d+i-1); tt = (0.5*w+aa)*w; goto S160; S150: tt = u; S160: ustar = sre_random(); if(ustar > tt) goto S50; u = sre_random(); if(ustar >= u) goto S150; u = sre_random(); goto S140; } /* Function: Linefit() * * Purpose: Given points x[0..N-1] and y[0..N-1], fit to * a straight line y = a + bx. * a, b, and the linear correlation coefficient r * are filled in for return. * * Args: x - x values of data * y - y values of data * N - number of data points * ret_a - RETURN: intercept * ret_b - RETURN: slope * ret_r - RETURN: correlation coefficient * * Return: 1 on success, 0 on failure. */ int Linefit(float *x, float *y, int N, float *ret_a, float *ret_b, float *ret_r) { float xbar, ybar; float sxx, syy, sxy; int i; /* Calculate averages, xbar and ybar */ xbar = ybar = 0.0; for (i = 0; i < N; i++) { xbar += x[i]; ybar += y[i]; } xbar /= N; ybar /= N; sxx = syy = sxy = 0.0; for (i = 0; i < N; i++) { sxx += (x[i] - xbar) * (x[i] - xbar); syy += (y[i] - ybar) * (y[i] - xbar); sxy += (x[i] - xbar) * (y[i] - ybar); } *ret_b = sxy / sxx; *ret_a = ybar - xbar*(*ret_b); *ret_r = sxy / (sqrt(sxx) * sqrt(syy)); return 1; } /* Function: Gammln() * * Returns the natural log of the gamma function of x. * x is > 0.0. * * Adapted from a public domain implementation in the * NCBI core math library. Thanks to John Spouge and * the NCBI. (According to the NCBI, that's Dr. John * "Gammas Galore" Spouge to you, pal.) */ float Gammln(float x) { int i; double xx, tx; double tmp, value; static double cof[11] = { 4.694580336184385e+04, -1.560605207784446e+05, 2.065049568014106e+05, -1.388934775095388e+05, 5.031796415085709e+04, -9.601592329182778e+03, 8.785855930895250e+02, -3.155153906098611e+01, 2.908143421162229e-01, -2.319827630494973e-04, 1.251639670050933e-10 }; /* Protect against x=0. We see this in Dirichlet code, * for terms alpha = 0. This is a severe hack but it is effective * and safe. (due to GJM) */ if (x <= 0.0) return 999999.; xx = x - 1.0; tx = tmp = xx + 11.0; value = 1.0; for (i = 10; i >= 0; i--) /* sum least significant terms first */ { value += cof[i] / tmp; tmp -= 1.0; } value = log(value); tx += 0.5; value += 0.918938533 + (xx+0.5)*log(tx) - tx; return (float) value; } /* Vector operations for doubles and floats. * DNorm(), FNorm() -- normalize a probability vector of length n. * return 0 if all values were zero. * DScale(), FScale() -- multiply all items in vector by scale * DSet(), FSet() -- set all items in vector to value. */ int DNorm(double *vec, int n) { int x; double sum; sum = 0.0; for (x = 0; x < n; x++) sum += vec[x]; if (sum != 0.0) for (x = 0; x < n; x++) vec[x] /= sum; else { squid_errno = SQERR_DIVZERO; return 0; } return 1; } int FNorm(float *vec, int n) { int x; float sum; sum = 0.0; for (x = 0; x < n; x++) sum += vec[x]; if (sum != 0.0) for (x = 0; x < n; x++) vec[x] /= sum; else { squid_errno = SQERR_DIVZERO; return 0; } return 1; } void DScale(double *vec, int n, double scale) { int x; for (x = 0; x < n; x++) vec[x] *= scale; } void FScale(float *vec, int n, float scale) { int x; for (x = 0; x < n; x++) vec[x] *= scale; } void DSet(double *vec, int n, double value) { int x; for (x = 0; x < n; x++) vec[x] *= value; } void FSet(float *vec, int n, float value) { int x; for (x = 0; x < n; x++) vec[x] *= value; } double DSum(double *vec, int n) { double sum = 0.; int x; for (x = 0; x < n; x++) sum += vec[x]; return sum; } float FSum(float *vec, int n) { float sum = 0.; int x; for (x = 0; x < n; x++) sum += vec[x]; return sum; } /* Function: sre_random() * * Purpose: Return a uniform deviate from 0.0 to 1.0. * sre_randseed is a static variable, set * by sre_srandom(). sre_reseed is a static flag * raised by sre_srandom(), saying that we need * to re-initialize. * [0.0 <= x < 1.0] * * Uses a simple linear congruential generator with * period 2^28. Based on discussion in Robert Sedgewick's * _Algorithms in C_, Addison-Wesley, 1990. * * Requires that long int's have at least 32 bits. * * Reliable and portable, but slow. Benchmarks on wol, * using IRIX cc and IRIX C library rand() and random(): * sre_random(): 0.8 usec/call * random(): 0.3 usec/call * rand(): 0.3 usec/call */ #define RANGE 268435456 /* 2^28 */ #define DIV 16384 /* sqrt(RANGE) */ #define MULT 72530821 /* my/Cathy's birthdays, x21, x even (Knuth)*/ float sre_random(void) { static long rnd; static int firsttime = 1; long high1, low1; long high2, low2; if (sre_reseed || firsttime) { sre_reseed = firsttime = 0; if (sre_randseed <= 0) sre_randseed = 666; /* seeds of zero break me */ high1 = sre_randseed / DIV; low1 = sre_randseed % DIV; high2 = MULT / DIV; low2 = MULT % DIV; rnd = (((high2*low1 + high1*low2) % DIV)*DIV + low1*low2) % RANGE; } high1 = rnd / DIV; low1 = rnd % DIV; high2 = MULT / DIV; low2 = MULT % DIV; rnd = (((high2*low1 + high1*low2) % DIV)*DIV + low1*low2) % RANGE; return ((float) rnd / (float) RANGE); } #undef RANGE #undef DIV #undef MULT /* Function: sre_srandom() * * Purpose: Initialize with a random seed. Seed can be * any integer. */ void sre_srandom(int seed) { if (seed < 0) seed = -1 * seed; sre_reseed = 1; sre_randseed = seed; } /* Functions: DChoose(), FChoose() * * Purpose: Make a random choice from a normalized distribution. * DChoose() is for double-precision vectors; * FChoose() is for single-precision float vectors. * Returns the number of the choice. */ int DChoose(double *p, int N) { double roll; /* random fraction */ double sum; /* integrated prob */ int i; /* counter over the probs */ roll = sre_random(); sum = 0.0; for (i = 0; i < N; i++) { sum += p[i]; if (roll < sum) return i; } return (int) (sre_random() * N); /* bulletproof */ } int FChoose(float *p, int N) { float roll; /* random fraction */ float sum; /* integrated prob */ int i; /* counter over the probs */ roll = sre_random(); sum = 0.0; for (i = 0; i < N; i++) { sum += p[i]; if (roll < sum) return i; } return (int) (sre_random() * N); /* bulletproof */ } /* Functions: DLogSum(), FLogSum() * * Calculate the sum of a log vector * *in normal space*, and return the log of the sum. */ double DLogSum(double *logp, int n) { int x; double max = -1.0e30; double sum; for (x = 0; x < n; x++) if (logp[x] > max) max = logp[x]; sum = 0.0; for (x = 0; x < n; x++) if (logp[x] > max - 50.) sum += exp(logp[x] - max); sum = log(sum) + max; return sum; } float FLogSum(float *logp, int n) { int x; float max = -1.0e30; float sum; for (x = 0; x < n; x++) if (logp[x] > max) max = logp[x]; sum = 0.0; for (x = 0; x < n; x++) if (logp[x] > max - 50.) sum += exp(logp[x] - max); sum = log(sum) + max; return sum; } tRNAscan-SE-2.0/src/probify.c0000644000543100007160000001561711021467305015250 0ustar pchanlowelab/* probify.c * Convert counts to probabilities, using regularization. * SRE, Fri Sep 3 08:02:49 1993 * * Because our training sequence set is finite (and often small) * and our number of free parameters is large, we have a small * sample statistics problem in estimating each parameter. * * The simplest way to deal with this problem is to use the * so-called Laplace law of succession. If I have N sequences * with a base symbol assigned to some state, and see n A's, * I calculate the emission probability of A as (n+1)/(N+4), * i.e., adding 1 to the numerator and the number of possible * outcomes (4) to the denominator. A summary of the proof of * this appears in Berg & von Hippel (J Mol Biol 193:723-750, 1987). * It is referred to as the "plus-one prior" by David Haussler * and by us. * * The plus-one prior implies that we have no knowledge at all about * the prior probabilities; in absence of any data, the probabilities * default to 1/4. What if we do have prior information? (For instance, * for state transitions, we know that deletes and inserts are * relatively rare.) We use a generalization of the Laplace law * of succession: * n(x) + alpha * R(x) * P(x) = ------------------- * --- * \ n(i) + alpha * R(i) * /__ * i * * Here, R(x) is a "regularizer" and alpha is a weight applied * to the regularizer. Both were 1.0 in the plus-one prior. * Now, we can bias R(x) to reflect our prior expectations * about the probability distribution P(x). (In practice, * we calculate R(x) by specifying a prior probability distribution * and multiplying each term by the number of possible outcomes.) * alpha is a "confidence" term; the higher alpha is, the more * data it takes to outweigh the prior. We usually set alpha to * 1.0, but sometimes -- such as for insert state emissions, * where we may assert that the emission probabilities are * the same as random regardless of the data -- we might use * arbitrarily high alpha's to freeze certain probability distributions * at their priors. * * All this follows the description in Krogh et. al's HMM paper * (in press, JMB, 1993). * */ #include "structs.h" #include "funcs.h" /* Function: ProbifyCM() * * Purpose: Convert all the state transitions and symbol emissions in * a covariance model from counts to probabilities. * * Args: cm - the model to convert * * Return: (void). Counts in cm become probabilities. */ void ProbifyCM(struct cm_s *cm, struct prior_s *prior) { int k; for (k = 0; k < cm->nodes; k++) { if (cm->nd[k].type != BIFURC_NODE) { if (cm->nd[k].nxt == -1) ProbifyTransitionMatrix(cm->nd[k].tmx, cm->nd[k].type, END_NODE, prior); else ProbifyTransitionMatrix(cm->nd[k].tmx, cm->nd[k].type, cm->nd[k+1].type, prior); } switch (cm->nd[k].type) { case MATP_NODE: ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); ProbifySingletEmission(cm->nd[k].ir_emit, uINSR_ST, prior); ProbifySingletEmission(cm->nd[k].ml_emit, uMATL_ST, prior); ProbifySingletEmission(cm->nd[k].mr_emit, uMATR_ST, prior); ProbifyPairEmission(cm->nd[k].mp_emit, prior); break; case MATL_NODE: ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); ProbifySingletEmission(cm->nd[k].ml_emit, uMATL_ST, prior); break; case MATR_NODE: ProbifySingletEmission(cm->nd[k].ir_emit, uINSR_ST, prior); ProbifySingletEmission(cm->nd[k].mr_emit, uMATR_ST, prior); break; case BEGINR_NODE: ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); break; case ROOT_NODE: ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); ProbifySingletEmission(cm->nd[k].ir_emit, uINSR_ST, prior); break; case BIFURC_NODE: break; case BEGINL_NODE: break; default: Die("Unrecognized node type %d at node %d", cm->nd[k].type, k); } } } /* Function: ProbifyTransitionMatrix() * * Purpose: Convert the state transition matrix between two nodes * from counts to probabilities. * * Args: tmx: 6x6 state transition matrix of counts * from_node: e.g. MATP_NODE, type of node we transit from * to_node: type of node we transit to * prior: prior probability distributions * * Return: (void). Values in tmx become probabilities. */ void ProbifyTransitionMatrix(double tmx[STATETYPES][STATETYPES], int from_node, int to_node, struct prior_s *prior) { int i,j; double denom; for (i = 0; i < STATETYPES; i++) { /* if no transitions to DEL in prior, this must be an unused vector */ if (prior->tprior[from_node][to_node][i][0] > 0.0) { denom = 0.0; for (j = 0; j < STATETYPES; j++) { tmx[i][j] = tmx[i][j] + prior->talpha[i] * prior->tprior[from_node][to_node][i][j]; denom += tmx[i][j]; } for (j = 0; j < STATETYPES; j++) tmx[i][j] /= denom; } } } /* Function: ProbifySingletEmission() * * Purpose: Convert a singlet emission vector from counts to probabilities. * * Args: emvec: the emission vector * statetype: type of state: uMATL_ST, uMATR_ST, uINSL_ST, uINSR_ST * prior: prior probability distributions * * Return: (void). Values in emvec become probabilities. */ void ProbifySingletEmission(double emvec[ALPHASIZE], int statetype, struct prior_s *prior) { int x; double denom; double *em_prior; /* Choose the correct prior probability distribution to use. */ switch (statetype) { case uMATL_ST: em_prior = prior->matl_prior; break; case uMATR_ST: em_prior = prior->matr_prior; break; case uINSL_ST: em_prior = prior->insl_prior; break; case uINSR_ST: em_prior = prior->insr_prior; break; default: Die("statetype %d is not a singlet emitting state\n", statetype); } denom = 0.0; for (x = 0; x < ALPHASIZE; x++) { emvec[x] = emvec[x] + prior->emalpha[StatetypeIndex(statetype)] * em_prior[x]; denom += emvec[x]; } if (denom > 0.0) for (x = 0; x < ALPHASIZE; x++) emvec[x] /= denom; } /* Function: ProbifyPairEmission() * * Purpose: Convert a MATP pairwise emission matrix from counts to probabilities. * * Args: emx: the emission matrix * prior: prior probability distributions * * Return: (void). Values in emx become probabilities. */ void ProbifyPairEmission(double emx[ALPHASIZE][ALPHASIZE], struct prior_s *prior) { int x,y; double denom; denom = 0.0; for (x = 0; x < ALPHASIZE; x++) for (y = 0; y < ALPHASIZE; y++) { emx[x][y] = emx[x][y] + prior->emalpha[MATP_ST] * prior->matp_prior[x][y]; denom += emx[x][y]; } if (denom > 0.0) for (x = 0; x < ALPHASIZE; x++) for (y = 0; y < ALPHASIZE; y++) emx[x][y] /= denom; } tRNAscan-SE-2.0/src/prior.c0000644000543100007160000002673411021467305014733 0ustar pchanlowelab/* prior.c * Configure prior probability distributions * Mon Sep 6 09:42:16 1993 * * Designed to make it fairly easy to replace the prior with * different numbers, or ever completely different structures, * but for now we just copy a default prior out of prior.h */ #include #include #include "structs.h" #include "prior.h" static int get_real(FILE *fp, double *ret_real); /* Function: DefaultPrior() * * Purpose: Copy the default prior from prior.h into a structure. * * Args: ret_prior: RETURN: new struct containing prior prob. distributions * * Return: 1 on success, 0 on failure. ret_prior is malloc'ed here and * must be free'd by caller by a free(*ret_prior). */ int DefaultPrior(struct prior_s **ret_prior) { struct prior_s *prior; int i,j,fy,ty; /* counters */ if ((prior = (struct prior_s *) malloc (sizeof(struct prior_s))) == NULL) Die("malloc failed"); for (i = 0; i < 7; i++) for (j = 0; j < 4; j++) for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) prior->tprior[i][j][fy][ty] = def_tprior[i][j][fy][ty]; for (i = 0; i < ALPHASIZE; i++) { prior->rfreq[i] = def_rfreq[i]; prior->matl_prior[i] = def_matl_prior[i]; prior->matr_prior[i] = def_matr_prior[i]; prior->insl_prior[i] = def_insl_prior[i]; prior->insr_prior[i] = def_insr_prior[i]; for (j = 0; j < ALPHASIZE; j++) prior->matp_prior[i][j] = def_matp_prior[i][j]; } for (ty = 0; ty < STATETYPES; ty++) { prior->talpha[ty] = def_talpha[ty]; prior->emalpha[ty] = def_emalpha[ty]; } *ret_prior = prior; return 1; } /* Function: ReadPrior() * * Purpose: Get a prior from a file. * * Return: 1 on success, 0 on failure. * ret_prior is alloced here, must be free'd by caller */ int ReadPrior(FILE *fp, struct prior_s **ret_prior) { struct prior_s *prior; double param; int fnode,tnode,fs,ts; /* counters */ int i,j; if ((prior = (struct prior_s *) malloc (sizeof(struct prior_s))) == NULL) Die("malloc failed"); /* Read rfreq's: expected symbol emission probability distribution for * unrelated background sequence (the "random model") */ if (!get_real(fp, ¶m)) return 0; prior->rfreq[0] = param; for (i = 1; i < ALPHASIZE; i++) { if (!get_real(NULL, ¶m)) return 0; prior->rfreq[i] = param; } /* Read talpha's: weights attached to state transition priors. * Often all 1.0 */ for (i = 0; i < STATETYPES; i++) { if (!get_real(NULL, ¶m)) return 0; prior->talpha[i] = param; } /* Read emalpha's: weights attached to symbol emission priors. * Often all 1.0. INSR_ST, INSL_ST sometimes set very high to * fix insert states as unlearnable */ for (i = 0; i < STATETYPES; i++) { if (!get_real(NULL, ¶m)) return 0; prior->emalpha[i] = param; } /* Read matp_prior: symbol emission priors for matp */ for (i = 0; i < ALPHASIZE; i++) for (j = 0; j < ALPHASIZE; j++) { if (!get_real(NULL, ¶m)) return 0; prior->matp_prior[i][j] = param; } /* Read singlet emission priors, in order MATL, MATR, INSL, INSR */ for (i = 0; i < ALPHASIZE; i++) { if (!get_real(NULL, ¶m)) return 0; prior->matl_prior[i] = param; } for (i = 0; i < ALPHASIZE; i++) { if (!get_real(NULL, ¶m)) return 0; prior->matr_prior[i] = param; } for (i = 0; i < ALPHASIZE; i++) { if (!get_real(NULL, ¶m)) return 0; prior->insl_prior[i] = param; } for (i = 0; i < ALPHASIZE; i++) { if (!get_real(NULL, ¶m)) return 0; prior->insr_prior[i] = param; } /* Read tprior: state transition priors. * In order [7 from nodes][4 to nodes][from state][to state] */ for (fnode = 0; fnode < 7; fnode++) for (tnode = 0; tnode < 4; tnode++) for (fs = 0; fs < STATETYPES; fs++) for (ts = 0; ts < STATETYPES; ts++) { if (!get_real(NULL, ¶m)) return 0; prior->tprior[fnode][tnode][fs][ts] = param; } *ret_prior = prior; return 1; } /* Function: WritePrior() * * Purpose: Write a prior to an open file pointer. * The file is usable as a prior.h header file. * * Return: 1 on success, 0 on failure. */ int WritePrior(FILE *fp, struct prior_s *prior) { int fnode,tnode,fs,ts; /* counters */ int i,j; if (fp == NULL) return 0; fprintf(fp, "#ifdef PRIORH_INCLUDED\n\n"); fprintf(fp, "#include \"structs.h\"\n\n"); /* Write rfreq */ fprintf(fp, "static double def_rfreq[ALPHASIZE] = { "); for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%f%s", prior->rfreq[i], (i == ALPHASIZE-1) ? " };\n\n" : ", "); /* Write talpha */ fprintf(fp, "static double def_talpha[STATETYPES] =\n{ "); for (i = 0; i < STATETYPES; i++) fprintf(fp, "%f%s", prior->talpha[i], (i == STATETYPES-1) ? " };\n\n" : ", "); /* Write emalpha */ fprintf(fp, "static double def_emalpha[STATETYPES] =\n{ "); for (i = 0; i < STATETYPES; i++) fprintf(fp, "%f%s", prior->emalpha[i], (i == STATETYPES-1) ? " };\n\n" : ", "); /* Write matp_prior */ fprintf(fp, "static double def_matp_prior[ALPHASIZE][ALPHASIZE] =\n{\n"); for (i = 0; i < ALPHASIZE; i++) { fprintf(fp, " { "); for (j = 0; j < ALPHASIZE; j++) fprintf(fp, "%f%s", prior->matp_prior[i][j], (j == ALPHASIZE-1) ? " },\n" : ", "); } fprintf(fp, "};\n\n"); /* Write the singlet emission priors, in order MATL, MATR, INSL, INSR */ fprintf(fp, "static double def_matl_prior[ALPHASIZE] = { "); for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%f%s", prior->matl_prior[i], (i == ALPHASIZE-1) ? " };\n\n" : ", "); fprintf(fp, "static double def_matr_prior[ALPHASIZE] = { "); for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%f%s", prior->matr_prior[i], (i == ALPHASIZE-1) ? " };\n\n" : ", "); fprintf(fp, "static double def_insl_prior[ALPHASIZE] = { "); for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%f%s", prior->insl_prior[i], (i == ALPHASIZE-1) ? " };\n\n" : ", "); fprintf(fp, "static double def_insr_prior[ALPHASIZE] = { "); for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%f%s", prior->insr_prior[i], (i == ALPHASIZE-1) ? " };\n\n" : ", "); /* Write the state transition priors */ fprintf(fp, "static double def_tprior[7][4][STATETYPES][STATETYPES] =\n{\n"); for (fnode = 0; fnode < 7; fnode++) { fprintf(fp, " {\n"); /* open block of 4 tonodes */ for (tnode = 0; tnode < 4; tnode++) { fprintf(fp, " { "); /* open block of 6 from states */ for (fs = 0; fs < STATETYPES; fs++) { fprintf(fp, "%s", fs == 0? " { " : " { "); for (ts = 0; ts < STATETYPES; ts++) fprintf(fp, "%f%s", prior->tprior[fnode][tnode][fs][ts], (ts == STATETYPES-1) ? " },\n" : ", "); } fprintf(fp, " },\n\n"); /* end block of 6 from states */ } fprintf(fp, " },\n\n"); /* end block of 4 tonodes */ } fprintf(fp, "};\n"); fprintf(fp, "#endif /* PRIORH_INCLUDED */\n"); return 1; } /* Function: NormalizePrior() * * Purpose: convert a prior containing counts to one suitable for saving; * the sum of each vector is the number of possibilities. * i.e., an emission vector sums to ALPHASIZE, a state transition * vector sums to the number of downstream states, and the MATP * emission table sums to ALPHASIZE*ALPHASIZE. */ void NormalizePrior(struct prior_s *prior) { int fnode, tnode, fs, ts; /* counters */ double sum; double conn; /* count of downstream connected states */ /* Normalize the vectors */ DNorm(prior->rfreq, ALPHASIZE); /* rfreq, random model */ DNorm((double *) prior->matp_prior, ALPHASIZE * ALPHASIZE); /* MATP emission prior */ DNorm(prior->matl_prior, ALPHASIZE); /* MATL emission prior */ DNorm(prior->matr_prior, ALPHASIZE); /* MATR emission prior */ DNorm(prior->insl_prior, ALPHASIZE); /* INSL emission prior */ DNorm(prior->insr_prior, ALPHASIZE); /* INSR emission prior */ /* Scale them to ALPHASIZE or ALPHASIZE*ALPHASIZE */ DScale(prior->rfreq, ALPHASIZE, (double) ALPHASIZE); /* rfreq, random model */ DScale((double *) prior->matp_prior, ALPHASIZE*ALPHASIZE, (double)(ALPHASIZE * ALPHASIZE)); /* MATP */ DScale(prior->matl_prior, ALPHASIZE, (double) ALPHASIZE); /* MATL emission prior */ DScale(prior->matr_prior, ALPHASIZE, (double) ALPHASIZE); /* MATR emission prior */ DScale(prior->insl_prior, ALPHASIZE, (double) ALPHASIZE); /* INSL emission prior */ DScale(prior->insr_prior, ALPHASIZE, (double) ALPHASIZE); /* INSR emission prior */ /* state transition priors * deal with specially */ for (fnode = 0; fnode < 7; fnode++) for (tnode = 0; tnode < 4; tnode++) for (fs = 0; fs < STATETYPES; fs++) { sum = conn = 0.0; for (ts = 0; ts < STATETYPES; ts++) if (prior->tprior[fnode][tnode][fs][ts] > 0.0) { conn += 1.0; sum += prior->tprior[fnode][tnode][fs][ts]; } if (sum > 0.0) for (ts = 0; ts < STATETYPES; ts++) prior->tprior[fnode][tnode][fs][ts] = prior->tprior[fnode][tnode][fs][ts] * conn / sum; } } /* Function: get_real() * * Purpose: Read next parameter from fp. * This is a very general reading function for reading * parameters from files with C-style comments. * As long as the caller * knows the order of what he's reading, he can format * the file any way he wants. * * Works somewhat like strtok. Call it with fp * on first invocation; call with NULL on subsequent * invocations. Can't work on multiple files * simultaneously, and can't do anything else * to them (lest we lose track of begin/end comments) * * Also note that we use strtok internally, so * the caller can't call strtok() between get_real calls * on the same file. * * Return: 1 on success; 0 on failure (such as end of file) */ static int get_real(FILE *fp, double *ret_real) { static int in_comment = 0; static FILE *internalfp = NULL; static char *lineptr = NULL; static char stripbuffer[512]; /* buffer with comments removed */ char buffer[512]; char *sptr; char *stripptr; if (fp != NULL) { internalfp = fp; lineptr = NULL; } while (1) { if (lineptr == NULL) { /* Get next line. */ if (fgets(buffer, 512, internalfp) == NULL) return 0; /* Preprocess the line, stripping out comments. * The stripped copy goes into stripbuffer. */ stripptr = stripbuffer; for (sptr = buffer; *sptr; sptr++) { /* If we're in a comment, we're ignoring stuff * until we see end-comment. Else, we're saving * stuff until we see start-comment. */ if (in_comment) { if (*sptr == '*' && *(sptr+1) == '/') { in_comment = 0; sptr++; } } else { if (*sptr == '/' && *(sptr+1) == '*') { in_comment = 1; sptr++; } else { *stripptr = *sptr; stripptr++; } } } *stripptr = '\0'; lineptr = strtok(stripbuffer, WHITESPACE); } /* Now, get the first real and return it */ while (lineptr != NULL) { if (IsReal(lineptr)) { *ret_real = atof(lineptr); lineptr = strtok(NULL, WHITESPACE); return 1; } else lineptr = strtok(NULL, WHITESPACE); } } /*NOTREACHED*/ return 0; } tRNAscan-SE-2.0/src/dbmalloc.h0000644000543100007160000004322511021467306015355 0ustar pchanlowelab/* * (c) Copyright 1990, 1991, 1992 Conor P. Cahill (uunet!virtech!cpcahil). * You may copy, distribute, and use this software as long as this * copyright statement is not removed. */ /* * $Id: malloc.h.org,v 1.31 1992/06/22 23:40:10 cpcahil Exp $ */ #ifndef _DEBUG_MALLOC_INC #define _DEBUG_MALLOC_INC 1 #ifdef force_cproto_to_use_defines /* * these are just here because cproto used the c-preprocessor to generate * the prototypes and if they were left as #defines the prototypes.h file * would have the contents of the define, not the define itself */ typedef char DATATYPE; typedef int SIZETYPE; typedef void VOIDTYPE; typedef char MEMDATA; typedef int MEMSIZE; typedef int STRSIZE; #ifdef WRTSIZE #undef WRTSIZE #endif typedef unsigned int WRTSIZE; /* * for now, define CONST as const. A sed script in the makefile will change * this back to CONST in the prototypes.h file. */ #define CONST const #else /* force_cproto_to_use_defines */ /* * The following entries are automatically added by the Configure script. * If they are not correct for your system, then Configure is not handling * your system correctly. Please report this to the author along with * a description of your system and the correct values */ #if __GNUC__ && __STDC__ && __cplusplus #define VOIDTYPE void #define CONST const #define DATATYPE void #define SIZETYPE size_t #define MEMDATA void #define MEMSIZE size_t #define MEMCMPTYPE unsigned char #define STRSIZE size_t #define STRCMPTYPE unsigned char #else /* __GNUC__ && __STDC__ && __cplusplus */ #define VOIDTYPE void #define CONST const #define DATATYPE void #define SIZETYPE size_t #define MEMDATA void #define MEMSIZE int #define MEMCMPTYPE unsigned char #define STRSIZE size_t #define STRCMPTYPE unsigned char #endif /* __GNUC__ && __STDC__ && __cplusplus */ /* * END of automatic configuration stuff. */ /* * if DATATYPE is not defined, then the configure script must have had a * problem, or was used with a different compiler. So we have to stop * here and get the user to fix the problem. */ #ifndef DATATYPE /* * the following string should cause a comilation error and get the * user to look at this stuff to find out what is wrong. */ "This file is not configured correctly for this system. Run configure and check its results" char * malloc(); /* DON'T REMOVE THIS LINE if you get a compiler error here it is because the malloc.h file is not configured correctly See the readme/problems files for more info */ #endif /* DATATYPE */ #endif /* force_cproto_to_use_defines */ #define VOIDCAST (VOIDTYPE) /* * since we redefine much of the stuff that is #defined in string.h and * memory.h, we should do what we can to make sure that they don't get * included after us. This is typically accomplished by a special symbol * (similar to _DEBUG_MALLOC_INC defined above) that is #defined when the * file is included. Since we don't want the file to be included we will * #define the symbol ourselves. These will typically have to change from * one system to another. I have put in several standard mechanisms used to * support this mechanism, so hopefully you won't have to modify this file. */ #ifndef _H_STRING #define _H_STRING 1 #endif #ifndef __STRING_H #define __STRING_H 1 #endif #ifndef _STRING_H_ #define _STRING_H_ 1 #endif #ifndef _STRING_H #define _STRING_H 1 #endif #ifndef _STRING_INCLUDED #define _STRING_INCLUDED 1 #endif #ifndef __string_h #define __string_h 1 #endif #ifndef _string_h #define _string_h 1 #endif #ifndef _strings_h #define _strings_h 1 #endif #ifndef __strings_h #define __strings_h 1 #endif #ifndef _H_MEMORY #define _H_MEMORY 1 #endif #ifndef __MEMORY_H #define __MEMORY_H 1 #endif #ifndef _MEMORY_H_ #define _MEMORY_H_ 1 #endif #ifndef _MEMORY_H #define _MEMORY_H 1 #endif #ifndef _MEMORY_INCLUDED #define _MEMORY_INCLUDED 1 #endif #ifndef __memory_h #define __memory_h 1 #endif #ifndef _memory_h #define _memory_h 1 #endif /* * Malloc warning/fatal error handler defines... */ #define M_HANDLE_DUMP 0x80 /* 128 */ #define M_HANDLE_IGNORE 0 #define M_HANDLE_ABORT 1 #define M_HANDLE_EXIT 2 #define M_HANDLE_CORE 3 /* * Mallopt commands and defaults * * the first four settings are ignored by the debugging mallopt, but are * here to maintain compatibility with the system malloc.h. */ #define M_MXFAST 1 /* ignored by mallopt */ #define M_NLBLKS 2 /* ignored by mallopt */ #define M_GRAIN 3 /* ignored by mallopt */ #define M_KEEP 4 /* ignored by mallopt */ #define MALLOC_WARN 100 /* set malloc warning handling */ #define MALLOC_FATAL 101 /* set malloc fatal handling */ #define MALLOC_ERRFILE 102 /* specify malloc error file */ #define MALLOC_CKCHAIN 103 /* turn on chain checking */ #define MALLOC_FILLAREA 104 /* turn off area filling */ #define MALLOC_LOWFRAG 105 /* use best fit allocation mech */ #define MALLOC_CKDATA 106 /* turn off/on data checking */ #define MALLOC_REUSE 107 /* turn off/on freed seg reuse */ #define MALLOC_SHOWLINKS 108 /* turn off/on adjacent link disp */ union malloptarg { int i; char * str; }; /* * Malloc warning/fatal error codes */ #define M_CODE_CHAIN_BROKE 1 /* malloc chain is broken */ #define M_CODE_NO_END 2 /* chain end != endptr */ #define M_CODE_BAD_PTR 3 /* pointer not in malloc area */ #define M_CODE_BAD_MAGIC 4 /* bad magic number in header */ #define M_CODE_BAD_CONNECT 5 /* chain poingers corrupt */ #define M_CODE_OVERRUN 6 /* data overrun in malloc seg */ #define M_CODE_REUSE 7 /* reuse of freed area */ #define M_CODE_NOT_INUSE 8 /* pointer is not in use */ #define M_CODE_NOMORE_MEM 9 /* no more memory available */ #define M_CODE_OUTOF_BOUNDS 10 /* gone beyound bounds */ #define M_CODE_FREELIST_BAD 11 /* inuse segment on freelist */ #define M_CODE_NOBOUND 12 /* can't calculate boundry */ #define M_CODE_STK_NOCUR 13 /* no current element on stack */ #define M_CODE_STK_BADFUNC 14 /* current func doesn't match */ #define M_CODE_UNDERRUN 15 /* data underrun in malloc seg */ #ifndef __STDCARGS #if __STDC__ || __cplusplus #define __STDCARGS(a) a #else #define __STDCARGS(a) () #endif #endif #if __cplusplus extern "C" { #endif VOIDTYPE malloc_dump __STDCARGS((int)); VOIDTYPE malloc_list __STDCARGS((int,unsigned long, unsigned long)); int mallopt __STDCARGS((int, union malloptarg)); DATATYPE * debug_calloc __STDCARGS((CONST char *,int,SIZETYPE,SIZETYPE)); VOIDTYPE debug_cfree __STDCARGS((CONST char *, int, DATATYPE *)); VOIDTYPE debug_free __STDCARGS((CONST char *, int, DATATYPE *)); DATATYPE * debug_malloc __STDCARGS((CONST char *,int, SIZETYPE)); DATATYPE * debug_realloc __STDCARGS((CONST char *,int, DATATYPE *,SIZETYPE)); unsigned long DBmalloc_size __STDCARGS((CONST char *,int,unsigned long *)); int DBmalloc_chain_check __STDCARGS((CONST char *,int,int)); void StackEnter __STDCARGS((CONST char *, CONST char *, int)); void StackLeave __STDCARGS((CONST char *, CONST char *, int)); /* * X allocation related prototypes */ char * debug_XtMalloc __STDCARGS((CONST char *, int, unsigned int)); char * debug_XtRealloc __STDCARGS((CONST char *, int, char *, unsigned int)); char * debug_XtCalloc __STDCARGS((CONST char *, int, unsigned int, unsigned int)); void debug_XtFree __STDCARGS((CONST char *, int, char *)); void * debug_XtBCopy __STDCARGS((CONST char *, int, char *, char *, int)); extern void (*XtAllocErrorHandler) __STDCARGS((CONST char *)); /* * memory(3) related prototypes */ MEMDATA * DBmemccpy __STDCARGS((CONST char *file, int line, MEMDATA *ptr1, CONST MEMDATA *ptr2, int ch, MEMSIZE len)); MEMDATA * DBmemchr __STDCARGS((CONST char *file, int line, CONST MEMDATA *ptr1, int ch, MEMSIZE len)); MEMDATA * DBmemmove __STDCARGS((CONST char *file, int line, MEMDATA *ptr1, CONST MEMDATA *ptr2, MEMSIZE len)); MEMDATA * DBmemcpy __STDCARGS((CONST char *file, int line, MEMDATA *ptr1, CONST MEMDATA *ptr2, MEMSIZE len)); int DBmemcmp __STDCARGS((CONST char *file, int line, CONST MEMDATA *ptr1, CONST MEMDATA *ptr2, MEMSIZE len)); MEMDATA * DBmemset __STDCARGS((CONST char *file, int line, MEMDATA *ptr1, int ch, MEMSIZE len)); MEMDATA * DBbcopy __STDCARGS((CONST char *file, int line, CONST MEMDATA *ptr2, MEMDATA *ptr1, MEMSIZE len)); MEMDATA * DBbzero __STDCARGS((CONST char *file, int line, MEMDATA *ptr1, MEMSIZE len)); int DBbcmp __STDCARGS((CONST char *file, int line, CONST MEMDATA *ptr2, CONST MEMDATA *ptr1, MEMSIZE len)); /* * string(3) related prototypes */ char * DBstrcat __STDCARGS((CONST char *file,int line, char *str1, CONST char *str2)); char * DBstrdup __STDCARGS((CONST char *file, int line, CONST char *str1)); char * DBstrncat __STDCARGS((CONST char *file, int line, char *str1, CONST char *str2, STRSIZE len)); int DBstrcmp __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2)); int DBstrncmp __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2, STRSIZE len)); int DBstricmp __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2)); int DBstrincmp __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2, STRSIZE len)); char * DBstrcpy __STDCARGS((CONST char *file, int line, char *str1, CONST char *str2)); char * DBstrncpy __STDCARGS((CONST char *file, int line, char *str1, CONST char *str2, STRSIZE len)); STRSIZE DBstrlen __STDCARGS((CONST char *file, int line, CONST char *str1)); char * DBstrchr __STDCARGS((CONST char *file, int line, CONST char *str1, int c)); char * DBstrrchr __STDCARGS((CONST char *file, int line, CONST char *str1, int c)); char * DBindex __STDCARGS((CONST char *file, int line, CONST char *str1, int c)); char * DBrindex __STDCARGS((CONST char *file, int line, CONST char *str1, int c)); char * DBstrpbrk __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2)); STRSIZE DBstrspn __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2)); STRSIZE DBstrcspn __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2)); char * DBstrstr __STDCARGS((CONST char *file, int line, CONST char *str1, CONST char *str2)); char * DBstrtok __STDCARGS((CONST char *file, int line, char *str1, CONST char *str2)); #if __cplusplus }; #endif /* * Macro which enables logging of the file and line number for each allocation * so that it is easier to determine where the offending malloc comes from. * * NOTE that only code re-compiled with this include file will have this * additional info. Calls from libraries that have not been recompiled will * just have a null string for this info. */ #ifndef IN_MALLOC_CODE /* * allocation functions */ #define malloc(len) debug_malloc( __FILE__,__LINE__, (len)) #define realloc(ptr,len) debug_realloc(__FILE__,__LINE__, (ptr), (len)) #define calloc(numelem,size) debug_calloc(__FILE__,__LINE__,(numelem),(size)) #define cfree(ptr) debug_cfree(__FILE__,__LINE__,(ptr)) #define free(ptr) debug_free(__FILE__,__LINE__,(ptr)) #define malloc_size(histptr) DBmalloc_size(__FILE__,__LINE__,(histptr)) #define malloc_chain_check(todo) DBmalloc_chain_check(__FILE__,__LINE__,(todo)) /* * X allocation routines */ #define XtCalloc(_num,_size) debug_XtCalloc(__FILE__,__LINE__,_num,_size) #define XtMalloc(_size) debug_XtMalloc(__FILE__,__LINE__,_size) #define XtRealloc(_ptr,_size) debug_XtRealloc(__FILE__,__LINE__,_ptr,_size) #define XtFree(_ptr) debug_XtFree(__FILE__,__LINE__,_ptr) #define _XtBCopy(ptr1,ptr2,len) debug_XtBcopy(__FILE__,__LINE__,ptr1,ptr2,len) /* * Other allocation functions */ #define _malloc(_size) debug_malloc(__FILE__,__LINE__,_size) #define _realloc(_ptr,_size) debug_realloc(__FILE__,__LINE__,_ptr,_size) #define _calloc(_num,_size) debug_calloc(__FILE__,__LINE__,_num,_size) #define _free(_ptr) debug_free(__FILE__,__LINE__,_ptr) /* * memory(3) related functions */ #ifdef bcopy #undef bcopy #endif #ifdef bzero #undef bzero #endif #ifdef bcmp #undef bcmp #endif #define memccpy(ptr1,ptr2,ch,len) DBmemccpy(__FILE__,__LINE__,ptr1,ptr2,ch,len) #define memchr(ptr1,ch,len) DBmemchr(__FILE__,__LINE__,ptr1,ch,len) #define memmove(ptr1,ptr2,len) DBmemmove(__FILE__,__LINE__,ptr1, ptr2, len) #define memcpy(ptr1,ptr2,len) DBmemcpy(__FILE__, __LINE__, ptr1, ptr2, len) #define memcmp(ptr1,ptr2,len) DBmemcmp(__FILE__,__LINE__,ptr1, ptr2, len) #define memset(ptr1,ch,len) DBmemset(__FILE__,__LINE__,ptr1, ch, len) #define bcopy(ptr2,ptr1,len) DBbcopy(__FILE__,__LINE__,ptr2,ptr1,len) #define bzero(ptr1,len) DBbzero(__FILE__,__LINE__,ptr1,len) #define bcmp(ptr2,ptr1,len) DBbcmp(__FILE__, __LINE__, ptr2, ptr1, len) #define _bcopy(ptr2,ptr1,len) DBbcopy(__FILE__,__LINE__,ptr2,ptr1,len) #define _bzero(ptr1,len) DBbzero(__FILE__,__LINE__,ptr1,len) #define _bcmp(ptr2,ptr1,len) DBbcmp(__FILE__,__LINE__,ptr2,ptr1,len) #define __dg_bcopy(ptr2,ptr1,len) DBbcopy(__FILE__,__LINE__,ptr2,ptr1,len) #define __dg_bzero(ptr1,len) DBbzero(__FILE__,__LINE__,ptr1,len) #define __dg_bcmp(ptr2,ptr1,len) DBbcmp(__FILE__,__LINE__,ptr2,ptr1,len) /* * string(3) related functions */ #ifdef index #undef index #endif #ifdef rindex #undef rindex #endif #ifdef strcpy #undef strcpy #endif #ifdef strcpy #undef strcmp #endif #define index(str1,c) DBindex(__FILE__, __LINE__, str1, c) #define rindex(str1,c) DBrindex(__FILE__, __LINE__, str1, c) #define strcat(str1,str2) DBstrcat(__FILE__,__LINE__,str1,str2) #define strchr(str1,c) DBstrchr(__FILE__, __LINE__, str1,c) #define strcmp(str1,str2) DBstrcmp(__FILE__, __LINE__, str1, str2) #define strcpy(str1,str2) DBstrcpy(__FILE__, __LINE__, str1, str2) #define strcspn(str1,str2) DBstrcspn(__FILE__, __LINE__, str1,str2) #define strdup(str1) DBstrdup(__FILE__, __LINE__, str1) #define stricmp(str1,str2) DBstricmp(__FILE__, __LINE__, str1, str2) #define strincmp(str1,str2,len) DBstrincmp(__FILE__, __LINE__, str1,str2,len) #define strlen(str1) DBstrlen(__FILE__, __LINE__, str1) #define strncat(str1,str2,len) DBstrncat(__FILE__, __LINE__, str1,str2,len) #define strncpy(str1,str2,len) DBstrncpy(__FILE__,__LINE__,str1,str2,len) #define strncmp(str1,str2,len) DBstrncmp(__FILE__, __LINE__, str1,str2,len) #define strpbrk(str1,str2) DBstrpbrk(__FILE__, __LINE__, str1,str2) #define strrchr(str1,c) DBstrrchr(__FILE__,__LINE__,str1,c) #define strspn(str1,str2) DBstrspn(__FILE__, __LINE__, str1,str2) #define strstr(str1,str2) DBstrstr(__FILE__, __LINE__, str1, str2) #define strtok(str1,str2) DBstrtok(__FILE__, __LINE__, str1, str2) /* * malloc stack related functions */ #define malloc_enter(func) StackEnter(func,__FILE__,__LINE__) #define malloc_leave(func) StackLeave(func,__FILE__,__LINE__) #endif /* IN_MALLOC_CODE */ #endif /* _DEBUG_MALLOC_INC */ /* * $Log: malloc.h.org,v $ * Revision 1.31 1992/06/22 23:40:10 cpcahil * many fixes for working on small int systems * * Revision 1.30 1992/05/06 04:53:29 cpcahil * performance enhancments * * Revision 1.29 1992/04/22 18:17:32 cpcahil * added support for Xt Alloc functions, linted code * * Revision 1.28 1992/04/13 19:08:18 cpcahil * fixed case insensitive stuff * * Revision 1.27 1992/04/13 18:41:18 cpcahil * added case insensitive string comparison routines * * Revision 1.26 1992/04/13 17:26:25 cpcahil * minor portability changes * * Revision 1.25 1992/04/13 14:13:18 cpcahil * cleanup of log message. * * Revision 1.24 1992/04/13 03:09:14 cpcahil * lots of changes. * * Revision 1.23 1992/03/01 12:42:38 cpcahil * added support for managing freed areas and fixed doublword bndr problems * * Revision 1.22 1992/02/07 15:51:07 cpcahil * mods for sun4 * * Revision 1.21 1992/01/29 01:35:32 cpcahil * added sgi definition. * * Revision 1.20 1992/01/28 21:42:25 cpcahil * changes for the ibmRS6000 * * Revision 1.19 1992/01/28 18:05:37 cpcahil * misc fixes for patch 7 * * Revision 1.18 1992/01/22 16:21:35 cpcahil * added code to prevent inclusions of string.h and memory.h after malloc.h * was included. * * Revision 1.17 1992/01/10 17:26:46 cpcahil * fixed prototypes use of void. * * Revision 1.16 1992/01/10 16:53:39 cpcahil * added more info on sizetype and datatype. added support for overriding * use of void type. * * Revision 1.15 1992/01/09 17:19:11 cpcahil * put the close brace in the correct position. * * Revision 1.14 1992/01/09 17:12:36 cpcahil * added code to support inclusion in C++ modules * * Revision 1.13 1991/12/31 21:31:26 cpcahil * changes for patch 6. See CHANGES file for more info * * Revision 1.12 1991/12/26 22:31:29 cpcahil * added check to make sure file is not included twice. * * Revision 1.11 1991/12/06 17:58:46 cpcahil * added cfree() for compatibility with some wierd systems * * Revision 1.10 91/12/06 08:54:18 cpcahil * cleanup of __STDC__ usage and addition of CHANGES file * * Revision 1.9 91/12/04 09:23:40 cpcahil * several performance enhancements including addition of free list * * Revision 1.8 91/12/02 19:10:11 cpcahil * changes for patch release 5 * * Revision 1.7 91/11/25 14:42:00 cpcahil * Final changes in preparation for patch 4 release * * Revision 1.6 91/11/24 00:49:28 cpcahil * first cut at patch 4 * * Revision 1.5 91/11/20 11:54:10 cpcahil * interim checkin * * Revision 1.4 90/08/29 22:23:38 cpcahil * fixed mallopt to use a union as an argument. * * Revision 1.3 90/05/11 11:04:10 cpcahil * took out some extraneous lines * * Revision 1.2 90/05/11 00:13:09 cpcahil * added copyright statment * * Revision 1.1 90/02/23 07:09:03 cpcahil * Initial revision * */ tRNAscan-SE-2.0/src/train_main.c0000644000543100007160000003407011021467306015712 0ustar pchanlowelab/* train_main.c * 2.0: Fri Oct 1 16:02:11 1993 * SRE, Mon Jun 28 17:52:54 1993 * * main() for covet: training of a covariance hmm from aligned seqs */ #include #include #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "squid.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "a:A:b:fhG:i:mp:s:X:" static char usage[] = "\ Usage: covet [-options] \n\ where options are:\n\ -a : make starting model from alignment\n\ -A : save alignments to filename.1, etc., for animation\n\ -b : each iteration, back up curr model to \n\ -f : use flat text save formats, portable but clumsy\n\ -G : gap-open prob 0 < gop < 1 for random alignment generation\n\ -h : print short help and version info\n\ -i : take start model from \n\ -m : do maximum likelihood model construction (slow!)\n\ -p : use prior in ; default is Laplace plus-one\n\ -s : set random() seed\n\ -X : gap-extend prob 0 < gex < 1 for random alignment generation\n"; static char banner[] = "covet: training of a covariance model"; int main(int argc, char **argv) { char **rseqs; /* training sequences */ SQINFO *sqinfo; /* array of sqinfo structures for rseqs */ AINFO ainfo; /* alignment info */ int nseq; /* number of seqs */ char *seqfile; /* training sequence file */ int format; /* seqfile format */ char *cmfile; /* OUTPUT: saved cvhmm */ FILE *cmfp; /* OUTPUT: fp to cvfile */ struct cm_s *cm; /* model */ struct cm_s *newcm; /* new model */ struct istate_s *icm; /* model, integer log odds form */ int statenum; /* # of states in the model */ struct prior_s *prior; /* prior prob. distributions */ int idx; /* counter for sequences */ double score; /* score of individual alignment */ double totscore; /* summed scores over training seqs */ double oldscore; /* previous totscore for old model */ double delta; /* fractional change in scores for iteration */ int iteration; /* iteration number we're on */ struct trace_s **tr; /* tracebacks for each sequence */ double rfreq[ALPHASIZE]; /* expected background symbol frequencies */ int max_iterations; double threshold; /* fractional tolerance, test for convergence */ char *aseqfile; /* sequence alignment for model building */ char **aseqs; /* aligned sequences in aseqfile */ int num_aseqs; /* number of aseqs in aseqfile */ char *in_cmfile; /* file containing input model */ char *bckfile; /* backup file for saving models each iteration */ FILE *bckfp; /* open pointer to backup file */ int do_flatformat; /* TRUE if we save in flat text format */ int seed; /* seed for random() */ char *animateroot; /* root name for alignment animation save files */ char animationfile[256]; /* full animation file name (root.1, etc.) */ FILE *animfp; double random_open; /* insert-open probability for random alignment */ double random_extend; /* ins-extend probability for random alignment */ int fast_version; /* do Fastmodelmaker(), not Maxmodelmaker() */ char *prifile; /* file to obtain prior from */ FILE *prifp; /* open prifile for reading */ int watsoncrick; /* if TRUE, annotate only canonical pairs */ int optc; extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ #ifdef MEMDEBUG unsigned long histid1, histid2, orig_size, current_size; #endif /*********************************************** * Parse command line ***********************************************/ threshold = 0.01; /* default: 1% */ max_iterations = 100; aseqfile = NULL; in_cmfile = NULL; bckfile = NULL; do_flatformat = 0; seed = (int) time (0); /* default: "random" seed */ animateroot = NULL; random_open = 0.02; random_extend = 0.39; fast_version = TRUE; prifile = NULL; watsoncrick = TRUE; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'a': aseqfile = optarg; break; case 'A': animateroot = optarg; break; case 'b': bckfile = optarg; break; case 'f': do_flatformat = 1; break; case 'G': random_open = atof(optarg); break; case 'i': in_cmfile = optarg; break; case 'm': fast_version = FALSE; break; case 'p': prifile = optarg; break; case 's': seed = atoi(optarg); break; case 'X': random_extend = atof(optarg); break; case 'h': printf("%s\n version %s (%s)\n%s\n", banner, RELEASE, RELEASEDATE, usage); exit(0); default: Die("Error: unrecognized option %c\n", optc); } if (argc - optind != 2) Die("%s\n", usage); if (aseqfile != NULL && in_cmfile != NULL) Die("options -i and -a are exclusive\n%s", usage); cmfile = argv[argc-2]; seqfile = argv[argc-1]; sre_srandom(seed); #ifdef MEMDEBUG orig_size = malloc_size(&histid1); #endif /*********************************************** * Get sequence data and a prior ***********************************************/ /* random background model */ rfreq[0] = rfreq[1] = rfreq[2] = rfreq[3] = 0.25; if (! SeqfileFormat(seqfile, &format, NULL)) Die("Failed to determine format of sequence file %s", seqfile); /* read the training seqs from file */ if (! ReadMultipleRseqs(seqfile, format, &rseqs, &sqinfo, &nseq)) Die("Failed to read sequences from file %s", seqfile); for (idx = 0; idx < nseq; idx++) PrepareSequence(rseqs[idx]); if (prifile == NULL) { if (! DefaultPrior(&prior)) Die("Failed to copy prior probability distribution information"); } else { if ((prifp = fopen(prifile, "r")) == NULL) Die("Failed to open prior probability file %s", prifile); if (! ReadPrior(prifp, &prior)) Die("Failed to read prior probabilities from %s", prifile); fclose(prifp); } /*********************************************** * Create the starting model ***********************************************/ if (aseqfile != NULL) /* A start from an alignment */ { if (! SeqfileFormat(aseqfile, &format, NULL)) Die("Failed to determine format of seed alignment file %s", aseqfile); if (! ReadAlignment(aseqfile, format, &aseqs, &num_aseqs, &ainfo)) Die("Failed to read alignment from %s", aseqfile); for (idx = 0; idx < num_aseqs; idx++) s2upper(aseqs[idx]); if (fast_version) { if (! Fastmodelmaker(aseqs, &ainfo, nseq, prior, 0.70, NULL, &cm, NULL)) Die("Fastmodelmaker failed to create starting model from alignment"); } else { if (! Maxmodelmaker(aseqs, &ainfo, num_aseqs, -1.0, prior, NULL, &cm, NULL)) Die("Failed to create starting model from alignment"); } FreeAlignment(aseqs, num_aseqs, &ainfo); } else if (in_cmfile) /* A start from an existing model */ { if (! ReadCM(in_cmfile, &cm)) Die("Failed to read starting model from file %s", in_cmfile); } else /* A start from a flat model */ { RandomAlignment(rseqs, sqinfo, nseq, random_open, random_extend, &aseqs, &ainfo); if (fast_version) { if (! Fastmodelmaker(aseqs, &ainfo, nseq, prior, 0.70, NULL, &cm, NULL)) Die("Fastmodelmaker failed to create starting model from alignment"); } else { if (! Maxmodelmaker(aseqs, &ainfo, nseq, -1.0, prior, NULL, &cm, NULL)) Die("Failed to create starting model from alignment"); } FreeAlignment(aseqs, nseq, &ainfo); } /*********************************************** * Print banner ***********************************************/ puts(banner); printf(" release %s, %s\n\n", RELEASE, RELEASEDATE); printf("---------------------------------------------------\n"); printf("Training data: %s (%d sequences)\n", seqfile, nseq); if (aseqfile != NULL) printf("Starting model: from alignment in %s (%d seqs)\n", aseqfile, num_aseqs); else if (in_cmfile != NULL ) printf("Starting model: from existing model in %s\n", in_cmfile); else printf("Starting model: random alignment\n"); printf("Prior distributions: %s\n", prifile == NULL ? "plus-one" : prifile); printf("Modelmaking strategy: %s\n", fast_version ? "fast heuristic" : "max likelihood"); printf("Convergence threshold: %.4f\n", threshold); printf("Maximum iterations: %d\n", max_iterations); if (bckfile != NULL) printf("Backup model file: %s\n", bckfile); printf("seed for random(): %d\n", seed); printf("---------------------------------------------------\n"); puts(""); /*********************************************** * Train model by expectation maximization ***********************************************/ if ((tr = (struct trace_s **) malloc (nseq * sizeof(struct trace_s *))) == NULL) Die("Memory failure, line %d of %s", __LINE__, __FILE__); oldscore = -1.0 * HUGE_VAL; iteration = 0; while (iteration < max_iterations) { iteration++; printf("Iteration %4d : model of %d nodes, ", iteration, cm->nodes); /* Make a search model */ if (! RearrangeCM(cm, rfreq, &icm, &statenum)) Die("Failed to make an integer log-odds model"); /* First we align all the sequences to the model, * and construct a multiple sequence alignment */ totscore = 0.0; for (idx = 0; idx < nseq; idx++) { if (! ViterbiAlign(icm, statenum, rseqs[idx], &score, &tr[idx])) Die("viterbi alignment failed on sequence %d", idx); totscore += score; } /* An option for producing cool figures and animations: * save the alignment at each iteration, so we can animate * the learning process. I produced covariance matrices * with MIXY for each iteration, and used GNUPLOT to * animate the data as a series of 3D surface plots. */ if (animateroot != NULL) { sprintf(animationfile, "%s%d", animateroot, iteration); if ((animfp = fopen(animationfile, "w")) == NULL) Warn("Failed to open animation output file %s", animationfile); else { if (! Traces2Alignment(rseqs, sqinfo, tr, nseq, cm, watsoncrick, &aseqs, &ainfo)) Warn("Traces2Alignment() failed for animation"); WriteSELEX(animfp, aseqs, nseq, &ainfo, 60); FreeAlignment(aseqs, nseq, &ainfo); fclose(animfp); } } /* If we've converged, stop. * Else, make a new model from the alignment. */ delta = (totscore - oldscore) / fabs(totscore); printf("score %.3f, delta %.3f\n", totscore / (double) nseq, delta); if (delta > threshold || delta < 0) { if (! Traces2Alignment(rseqs, sqinfo, tr, nseq, cm, watsoncrick, &aseqs, &ainfo)) Die("Traces2Alignment() failed"); for (idx = 0; idx < nseq; idx++) s2upper(aseqs[idx]); if (fast_version) { if (! Fastmodelmaker(aseqs, &ainfo, nseq, prior, 0.70, NULL, &newcm, NULL)) Die("Failed to create new model from alignment"); } else { if (! Maxmodelmaker(aseqs, &ainfo, nseq, -1.0, prior, NULL, &newcm, NULL)) Die("Failed to create new model from alignment"); } FreeAlignment(aseqs, nseq, &ainfo); for (idx = 0; idx < nseq; idx++) FreeTrace(tr[idx], NULL); oldscore = totscore; } else { /* we've converged. Free traces and break out of iteration loop. */ for (idx = 0; idx < nseq; idx++) FreeTrace(tr[idx], NULL); break; } /* switch new model for old */ FreeCM(cm); free(icm); cm = newcm; /* Training takes a long time, and sysadmins are nasty evil * people who like to shut machines down without warning, particularly * during a long training run right before one gives a talk. * Therefore, we have an option for backing up the model every * iteration so we can resume after a crash or shutdown... */ if (bckfile != NULL) { if ((bckfp = fopen(bckfile, "w")) == NULL) Warn("Failed to open backup file %s\n", bckfile); else { if (! WriteBinaryCM(bckfp, newcm)) Warn("Failed to save to backup file %s\n", bckfile); fclose(bckfp); } } } /*********************************************** * Save the new model and exit. ***********************************************/ if ((cmfp = fopen(cmfile, "w")) == NULL) Die("Failed to open %s for writing", cmfile); if (do_flatformat && ! WriteCM(cmfp, cm)) Die("Failed to save the model to %s", cmfile); else if (! WriteBinaryCM(cmfp, cm)) Die("Failed to save the model to %s", cmfile); fclose(cmfp); free(tr); FreeCM(cm); for (idx = 0; idx < nseq; idx++) FreeSequence(rseqs[idx], &(sqinfo[idx])); free(sqinfo); printf("New covariance model written to file %s\n", cmfile); #ifdef MEMDEBUG current_size = malloc_size(&histid2); if (current_size != orig_size) malloc_list(2, histid1, histid2); else fprintf(stderr, "No memory leaks, sir.\n"); #endif return 0; } tRNAscan-SE-2.0/src/structs.c0000644000543100007160000001733511021467306015305 0ustar pchanlowelab/* structs.c * 1.0: SRE, Tue Jul 6 18:52:34 1993 * 2.0: SRE, Thu Sep 9 14:19:19 1993 * * Boring stuff which had better be flawless. * * Implementation of data structures. Includes * various pushdown stacks used for traversing model trees and * traceback trees, and linked lists used for collapsing trees * into linear alignments/strings. * * Stacks have dummy start states. The end is just a NULL * pointer off the last state in the stack. * * Linked lists have dummy start and end states, to facilitate * insertion and deletion. * * Pop functions only return values when the passed pointers * are non-NULL, so you can ask for whatever fields you want. * * For implementation of traceback tree structures, see trace.c. * For implementation of model structures, see model.c. */ #include #include #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: StatetypeIndex() * * Purpose: Convert a unique statetype identifier to a valid * array index */ int StatetypeIndex(int type) { switch (type) { case uBEGIN_ST: return BEGIN_ST; case uBIFURC_ST: return BIFURC_ST; case uDEL_ST: return DEL_ST; case uEND_ST: return END_ST; case uMATP_ST: return MATP_ST; case uMATL_ST: return MATL_ST; case uMATR_ST: return MATR_ST; case uINSR_ST: return INSR_ST; case uINSL_ST: return INSL_ST; default: Die("no such state, %d", type); } /*NOTREACHED*/ return 0; } /* Function: UniqueStatetype() * * Purpose: Convert an array index statetype into a unique statetype, * using the additional information of what kind of node * the state is from. */ int UniqueStatetype(int nodetype, int stidx) { switch (stidx) { case DEL_ST: switch (nodetype) { case -1: return uEND_ST; case BIFURC_NODE: return uBIFURC_ST; case BEGINL_NODE: case BEGINR_NODE: return uBEGIN_ST; default: return uDEL_ST; } case MATP_ST: return uMATP_ST; case MATL_ST: return uMATL_ST; case MATR_ST: return uMATR_ST; case INSR_ST: return uINSR_ST; case INSL_ST: return uINSL_ST; default: Die("no such state index %d", stidx); } /*NOTREACHED*/ return 0; } /************************************************************ * m2ali_s implementation. * * Functions: Init_m2ali() * Push_m2ali() * Pop_m2ali() * Free_m2ali() * * Implementation of the pushdown stack for traversing a model * and producing an alignment as a linked list of align_s * structures. Must keep track of a current node in the model * tree (stateidx, subtype) and a current insertion point in * the alignment (insafter) *************************************************************/ struct m2ali_s * Init_m2ali(void) { struct m2ali_s *stack; if ((stack = (struct m2ali_s *) malloc (sizeof(struct m2ali_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); stack->nxt = NULL; return stack; } void Push_m2ali(struct m2ali_s *stack, int nodeidx, int type, struct align_s *after) { struct m2ali_s *new; if ((new = (struct m2ali_s *) malloc (sizeof(struct m2ali_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); new->nodeidx= nodeidx; new->type = type; new->after = after; new->nxt = stack->nxt; stack->nxt = new; } int Pop_m2ali(struct m2ali_s *stack, int *ret_nodeidx, int *ret_type, struct align_s **ret_after) { struct m2ali_s *old; if (stack->nxt == NULL) return 0; old = stack->nxt; stack->nxt = old->nxt; if (ret_nodeidx != NULL) *ret_nodeidx = old->nodeidx; if (ret_type != NULL) *ret_type = old->type; if (ret_after != NULL) *ret_after = old->after; free(old); return 1; } void Free_m2ali( struct m2ali_s *stack ) { while (Pop_m2ali(stack, (int *) NULL, (int *) NULL, (struct align_s **) NULL)) ; free(stack); } /*************************************************************** * t2ali_s implementation. * * Functions: Init_t2ali() * Push_t2ali() * Pop_t2ali() * Free_t2ali() * * Implementation of the pushdown stack for traversing a traceback * and producing a linked list of align_s structures. ****************************************************************/ struct t2ali_s * Init_t2ali(void) { struct t2ali_s *stack; if ((stack = (struct t2ali_s *) malloc (sizeof(struct t2ali_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); stack->nxt = NULL; return stack; } void Push_t2ali(struct t2ali_s *stack, struct trace_s *tracenode, struct align_s *after) { struct t2ali_s *new; if ((new = (struct t2ali_s *) malloc (sizeof(struct t2ali_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); new->tracenode = tracenode; new->after = after; new->nxt = stack->nxt; stack->nxt = new; } int Pop_t2ali(struct t2ali_s *stack, struct trace_s **ret_tracenode, struct align_s **ret_after) { struct t2ali_s *old; if (stack->nxt == NULL) return 0; old = stack->nxt; stack->nxt = old->nxt; if (ret_tracenode != NULL) *ret_tracenode = old->tracenode; if (ret_after != NULL) *ret_after = old->after; free(old); return 1; } void Free_t2ali( struct t2ali_s *stack ) { while (Pop_t2ali(stack, (struct trace_s **) NULL, (struct align_s **) NULL)) ; free(stack); } /************************************************************ * align_s implementation * * Functions: Init_align() * Insafter_align() * Free_align() * Print_align() * * Implementation of a forward-linked list for alignment of * a model to a sequence. ************************************************************/ struct align_s * Init_align(void) { struct align_s *head; struct align_s *tail; if ((head = (struct align_s *) malloc (sizeof(struct align_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); if ((tail = (struct align_s *) malloc (sizeof(struct align_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); head->sym = tail->sym = ' '; head->ss = tail->ss = ' '; head->pos = tail->pos = -1; head->nodeidx = tail->nodeidx = -1; head->type = tail->type = -1; head->nxt = tail; tail->nxt = NULL; return head; } struct align_s * Insafter_align(int pos, char sym, /* ACGU base character */ char ss, /* <.> secondary structure character */ int nodeidx, int type, struct align_s *after) { struct align_s *new; if ((new = (struct align_s *) malloc (sizeof(struct align_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); new->pos = pos; new->sym = sym; new->ss = ss; new->nodeidx = nodeidx; new->type = type; new->nxt = after->nxt; after->nxt = new; return new; } void Delafter_align(struct align_s *after) { struct align_s *old; old = after->nxt; after->nxt = old->nxt; free(old); } void Free_align(struct align_s *head) { struct align_s *old; while (head != NULL) { old = head; head = head->nxt; free(old); } } #ifdef DEBUG void Print_align(struct align_s *head) { struct align_s *curr; for (curr = head->nxt; curr->nxt != NULL; curr = curr->nxt) fprintf(stderr, "%2d %c %c %2d %2d\n", curr->pos, curr->sym, curr->ss, curr->nodeidx, curr->type); } #endif /* DEBUG */ tRNAscan-SE-2.0/src/sre_ctype.c0000644000543100007160000000122511021467305015561 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* sre_ctype.c * * For portability. Some systems have functions tolower, toupper * as macros (for instance, MIPS M-2000 RISC/os!) */ #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif int sre_tolower(int c) { if (isupper(c)) return tolower(c); else return c; } int sre_toupper(int c) { if (islower(c)) return toupper(c); else return c; } tRNAscan-SE-2.0/src/trace.c0000644000543100007160000004163411021467306014673 0ustar pchanlowelab/* trace.c * cove 1.0: Mon May 17 09:38:14 1993 * moved to cove 2.0, Mon Sep 6 13:34:55 1993 * * Unlike a traceback of a normal HMM alignment, which is linear, * the traceback of a covariance HMM is a tree structure. Here * we provide support for the traceback data structures: the * tree itself, and a pushdown stack used for traversing the * tree. * * The trace tree structure has a dummy node at its beginning, * and dummy end nodes at the termination of each branch. Non-BIFURC * states have a NULL right branch. * * The pushdown stack structure has a dummy begin node, and the * end is signified by a final NULL ptr. */ #include #include #include #include "structs.h" /* struct trace_s and struct tracestack_s */ #include "funcs.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #ifdef DEBUG #include #endif /* Function: InitTrace() * * Purpose: Initialize a traceback tree structure. * ret_tmem may be passed as NULL for default behavior; * if ret_tmem is passed, enables optimized memory * behavior for traces. * * Return: ptr to the new tree. */ void InitTrace(struct trace_s **ret_new, struct trmem_s **ret_tmem) { struct trace_s *new; struct trace_s *end; struct trmem_s *pool; if (ret_tmem != NULL) { InitTracepool(&pool); new = PopTracepool(pool); } else if ((new = (struct trace_s *) malloc (sizeof(struct trace_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); new->emitl = new->emitr = -1; new->nodeidx = 0; new->type = uBEGIN_ST; new->nxtr = NULL; new->prv = NULL; if (ret_tmem != NULL) end = PopTracepool(pool); else if ((end = (struct trace_s *) malloc (sizeof(struct trace_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); end->type = uEND_ST; end->emitl = end->emitr = end->nodeidx = -1; end->nxtr = end->nxtl = NULL; end->prv = new; new->nxtl = end; *ret_new = new; if (ret_tmem != NULL) *ret_tmem = pool; } /* Function: AttachTrace() * * Purpose: attach a new node to a tracetree node. * There are dummy END nodes. * * Because of the mechanics of tracebacks through a Viterbi matrix, * we have to make sure that BIFURC children are attached * right first, left second. * * trmem_s may be NULL (default behavior) or an active * trace pool (optimized memory behavior) * * Returns: ptr to the new node, or NULL on failure. */ struct trace_s * AttachTrace(struct trace_s *parent, struct trmem_s *pool, int emitl, int emitr, int nodeidx, int type) { struct trace_s *new; struct trace_s *end; if (parent->nxtr != NULL) Die("That trace node is already full, fool."); /* If left branch is already connected to something, swap it over to the * right (thus enforcing the necessary rule that BIFURCS attach to the right * branch first), and attach a new dummy end to the left branch. */ if (parent->nxtl->nxtl != NULL) { parent->nxtr = parent->nxtl; if (pool != NULL) end = PopTracepool(pool); else if ((end = (struct trace_s *) malloc (sizeof(struct trace_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); end->type = uEND_ST; end->emitl = end->emitr = end->nodeidx = -1; end->nxtl = end->nxtr = NULL; end->prv = parent; parent->nxtl = end; } if (pool != NULL) new = PopTracepool(pool); else if ((new = (struct trace_s *) malloc (sizeof(struct trace_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); new->nxtr = NULL; new->nxtl = parent->nxtl; new->prv = parent; parent->nxtl->prv = new; /* end state also points back, to new */ parent->nxtl = new; new->emitl = emitl; new->emitr = emitr; new->nodeidx = nodeidx; new->type = type; return new; } void FreeTrace(struct trace_s *tr, struct trmem_s *pool) { if (pool == NULL) { struct tracestack_s *stack; struct trace_s *currtr; stack = InitTracestack(); PushTracestack(stack, tr); while ((currtr = PopTracestack(stack)) != NULL) { if (currtr->nxtr != NULL) PushTracestack(stack, currtr->nxtr); if (currtr->nxtl != NULL) PushTracestack(stack, currtr->nxtl); free(currtr); } FreeTracestack(stack); } else FreeTracepool(pool); } void DeleteTracenode(struct trace_s *oldtr, struct trmem_s *pool) { struct trace_s *parent; parent = oldtr->prv; parent->nxtl = oldtr->nxtl; parent->nxtr = oldtr->nxtr; oldtr->nxtl->prv = parent; if (oldtr->nxtr) oldtr->nxtr->prv = parent; if (pool == NULL) free(oldtr); } /* Functions: InitTracepool(), PopTracepool(), FreeTracepool() * * Purpose: Malloc() optimizations for building lots of * trace trees. A "trace pool" just lets me malloc * a lot of trace_s structures at once (InitTracepool). * They are retrieved one at a time using PopTracepool(). * When done (free'ing the trace), one would call * FreeTracepool(). * * Make one trace pool per trace, if using this optimization. */ void InitTracepool(struct trmem_s **ret_tmem) { struct trmem_s *tmem; tmem = (struct trmem_s *) MallocOrDie (sizeof(struct trmem_s)); tmem->next = 0; tmem->num = TMEM_BLOCK; tmem->pool = (struct trace_s *) MallocOrDie (TMEM_BLOCK * sizeof(struct trace_s)); tmem->used = InitTracestack(); *ret_tmem = tmem; } struct trace_s * PopTracepool(struct trmem_s *tmem) { struct trace_s *tr; if (tmem->next == tmem->num) { /* need a new pool */ PushTracestack(tmem->used, tmem->pool); tmem->next = 0; tmem->num = TMEM_BLOCK; tmem->pool = (struct trace_s *) MallocOrDie (TMEM_BLOCK * sizeof(struct trace_s)); } tr = tmem->pool + tmem->next; tmem->next++; return tr; } void FreeTracepool(struct trmem_s *tmem) { struct trace_s *pop; while ((pop = PopTracestack(tmem->used)) != NULL) free(pop); FreeTracestack(tmem->used); free(tmem->pool); free(tmem); } /* Functions: InitTracestack() * PushTracestack() * PopTracestack() * FreeTracestack() * * Purpose: Implementation of the pushdown stack for * traversing traceback trees. */ struct tracestack_s * InitTracestack(void) { struct tracestack_s *stack; stack = (struct tracestack_s *) MallocOrDie (sizeof(struct tracestack_s)); stack->next = 0; stack->num = TSTACK_BLOCK; stack->list = (struct trace_s **) MallocOrDie (sizeof(struct trace_s *) * TSTACK_BLOCK); return stack; } void PushTracestack(struct tracestack_s *stack, struct trace_s *tracenode) { if (stack->next == stack->num) { stack->num += TSTACK_BLOCK; stack->list = (struct trace_s **) ReallocOrDie (stack->list, sizeof(struct trace_s *) * stack->num); } stack->list[stack->next] = tracenode; stack->next++; } struct trace_s * PopTracestack(struct tracestack_s *stack) { struct trace_s *pop; if (stack->next == 0) return NULL; stack->next--; pop = stack->list[stack->next]; return pop; } void FreeTracestack(struct tracestack_s *stack) { free(stack->list); free(stack); } /* Function: TraceCount() * * Purpose: Given a trace structure, and the sequence it traces across, * and a nascent model (counts form), bump the appropriate * emission and transition counters in the model. * * Return: 1 on success, 0 on failure. */ int TraceCount(struct cm_s *cm, /* model */ char *seq, /* sequence, 0..len-1 */ double weight, /* weight on sequence */ struct trace_s *tr) /* traceback */ { struct tracestack_s *dolist; /* stack for traversal of traceback tree */ struct trace_s *curr; /* current node in the tree */ int symr, syml; #ifdef DEBUG int len; len = strlen(seq); #endif dolist = InitTracestack(); PushTracestack(dolist, tr->nxtl); while ((curr = PopTracestack(dolist)) != NULL) { /* ignore END states */ if (curr->nodeidx == -1 || curr->nxtl == NULL) continue; /* BIFURC states: no transits, no emission */ if (curr->nxtr != NULL) { #ifdef DEBUG assert(curr->nxtr != NULL && curr->nxtl != NULL); #endif PushTracestack(dolist, curr->nxtr); PushTracestack(dolist, curr->nxtl); } else if (curr->type == uINSL_ST) { #ifdef DEBUG assert(curr->emitl >= 0 && curr->emitl < len); #endif syml = SymbolIndex(seq[curr->emitl]); #ifdef DEBUG assert(syml >= 0 && syml < 4); assert(curr->nodeidx >= 0 && curr->nodeidx < cm->nodes); assert(curr->nxtl != NULL); #endif cm->nd[curr->nodeidx].tmx[INSL_ST][StatetypeIndex(curr->nxtl->type)] += weight; cm->nd[curr->nodeidx].il_emit[syml] += weight; PushTracestack(dolist, curr->nxtl); } else if (curr->type == uINSR_ST) { #ifdef DEBUG assert(curr->emitr >= 0 && curr->emitr < len); #endif symr = SymbolIndex(seq[curr->emitr]); #ifdef DEBUG assert(symr >= 0 && symr < 4); assert(curr->nodeidx >= 0 && curr->nodeidx < cm->nodes); assert(curr->nxtl != NULL); #endif cm->nd[curr->nodeidx].tmx[INSR_ST][StatetypeIndex(curr->nxtl->type)] += weight; cm->nd[curr->nodeidx].ir_emit[symr] += weight; PushTracestack(dolist, curr->nxtl); } else if (curr->type == uMATP_ST) { #ifdef DEBUG assert(curr->emitr >= 0 && curr->emitr < len); assert(curr->emitl >= 0 && curr->emitl < len); #endif syml = SymbolIndex(seq[curr->emitl]); symr = SymbolIndex(seq[curr->emitr]); #ifdef DEBUG assert(syml >= 0 && syml < 4); assert(symr >= 0 && symr < 4); assert(curr->nodeidx > 0 && curr->nodeidx < cm->nodes); assert(curr->nxtl != NULL); #endif cm->nd[curr->nodeidx].tmx[MATP_ST][StatetypeIndex(curr->nxtl->type)] += weight; cm->nd[curr->nodeidx].mp_emit[syml][symr] += weight; PushTracestack(dolist, curr->nxtl); } else if (curr->type == uMATL_ST) { #ifdef DEBUG assert(curr->emitl >= 0 && curr->emitl < len); #endif syml = SymbolIndex(seq[curr->emitl]); #ifdef DEBUG assert(syml >= 0 && syml < 4); assert(curr->nodeidx > 0 && curr->nodeidx < cm->nodes); assert(curr->nxtl != NULL); #endif cm->nd[curr->nodeidx].tmx[MATL_ST][StatetypeIndex(curr->nxtl->type)] += weight; cm->nd[curr->nodeidx].ml_emit[syml] += weight; PushTracestack(dolist, curr->nxtl); } else if (curr->type == uMATR_ST) { #ifdef DEBUG assert(curr->emitr >= 0 && curr->emitr < len); #endif symr = SymbolIndex(seq[curr->emitr]); #ifdef DEBUG assert(symr >= 0 && symr < 4); assert(curr->nodeidx > 0 && curr->nodeidx < cm->nodes); assert(curr->nxtl != NULL); #endif cm->nd[curr->nodeidx].tmx[MATR_ST][StatetypeIndex(curr->nxtl->type)] += weight; cm->nd[curr->nodeidx].mr_emit[symr] += weight; PushTracestack(dolist, curr->nxtl); } else /* DEL or BEGIN state */ { #ifdef DEBUG assert(curr->nodeidx >= 0 && curr->nodeidx < cm->nodes); assert(curr->nxtl->type >= 0 && curr->nxtl->type < STATETYPES); assert(curr->nxtl != NULL); #endif cm->nd[curr->nodeidx].tmx[DEL_ST][StatetypeIndex(curr->nxtl->type)] += weight; PushTracestack(dolist, curr->nxtl); } } FreeTracestack(dolist); return 1; } /* Function: TraceCountPrior() * * Purpose: Same as above, except that we register the counts * in a prior instead of a model. Used for "training" * new priors. * * Return: 1 on success, 0 on failure. */ int TraceCountPrior(struct cm_s *cm, /* covariance model */ struct prior_s *prior, /* prior to count into */ char *seq, /* sequence, 0..len-1 */ double weight, /* weight on sequence */ struct trace_s *tr) /* traceback */ { struct tracestack_s *dolist; /* stack for traversal of traceback tree */ struct trace_s *curr; /* current node in the tree */ int symr, syml; int fnode, tnode; int fs, ts; dolist = InitTracestack(); PushTracestack(dolist, tr->nxtl); while ((curr = PopTracestack(dolist)) != NULL) { /* ignore END states */ if (curr->nodeidx == -1 || curr->nxtl == NULL) continue; /* BIFURC states: no transits, no emission */ if (curr->nxtr != NULL) { PushTracestack(dolist, curr->nxtr); PushTracestack(dolist, curr->nxtl); continue; } syml = symr = 0; if (curr->emitl != -1 && !isgap(seq[curr->emitl])) syml = SymbolIndex(seq[curr->emitl]); if (curr->emitr != -1 && !isgap(seq[curr->emitr])) symr = SymbolIndex(seq[curr->emitr]); fnode = cm->nd[curr->nodeidx].type; tnode = (cm->nd[curr->nodeidx].nxt != -1) ? cm->nd[cm->nd[curr->nodeidx].nxt].type : END_NODE; fs = StatetypeIndex(curr->type); ts = (cm->nd[curr->nodeidx].nxt != -1) ? StatetypeIndex(curr->nxtl->type) : END_ST; /* Verify where we're writing in memory. Had some problems here! */ if (fnode < 0 || fnode > 6) Die("fnode is %d", fnode); if (tnode < 0 || tnode > 3) Die("tnode is %d", tnode); if (fs < 0 || fs >= STATETYPES) Die("fs is %d", fs); if (ts < 0 || ts >= STATETYPES) Die("ts is %d", ts); if (syml < 0 || syml >= ALPHASIZE) Die("syml is %d", syml); if (symr < 0 || symr >= ALPHASIZE) Die("symr is %d", symr); prior->tprior[fnode][tnode][fs][ts] += weight; switch (curr->type) { case uMATP_ST: prior->matp_prior[syml][symr] += weight; break; case uMATL_ST: prior->matl_prior[syml] += weight; break; case uMATR_ST: prior->matr_prior[symr] += weight; break; case uINSL_ST: prior->insl_prior[syml] += weight; break; case uINSR_ST: prior->insr_prior[symr] += weight; break; case uDEL_ST: break; default: Die("no such state type %d", curr->type); } PushTracestack(dolist, curr->nxtl); } FreeTracestack(dolist); return 1; } /* Function: TraceScore() * * Purpose: Given a trace structure, and the sequence it traces across, * and a model (probability form), calculate the log-odds * probability score. * * * Return: 1 on success, 0 on failure. */ double TraceScore(struct cm_s *cm, /* model */ char *seq, /* sequence, 0..len-1 */ struct trace_s *tr) /* traceback */ { struct tracestack_s *dolist; /* stack for traversal of traceback tree */ struct trace_s *curr; /* current node in the tree */ int symr, syml; double score; score = 0; dolist = InitTracestack(); PushTracestack(dolist, tr->nxtl); while ((curr = PopTracestack(dolist)) != NULL) { /* ignore END states */ if (curr->nodeidx == -1 || curr->nxtl == NULL) continue; /* BIFURC states: no transits, no emission */ if (curr->nxtr != NULL) { PushTracestack(dolist, curr->nxtr); PushTracestack(dolist, curr->nxtl); } else if (curr->type == uINSL_ST) { syml = SymbolIndex(seq[curr->emitl]); score += log(cm->nd[curr->nodeidx].tmx[INSL_ST][StatetypeIndex(curr->nxtl->type)]); score += log(cm->nd[curr->nodeidx].il_emit[syml]); score += log(4.0); /* for log-odds */ PushTracestack(dolist, curr->nxtl); } else if (curr->type == uINSR_ST) { symr = SymbolIndex(seq[curr->emitr]); score += log(cm->nd[curr->nodeidx].tmx[INSR_ST][StatetypeIndex(curr->nxtl->type)]); score += log(cm->nd[curr->nodeidx].ir_emit[symr]); score += log(4.0); /* for log-odds */ PushTracestack(dolist, curr->nxtl); } else if (curr->type == uMATP_ST) { syml = SymbolIndex(seq[curr->emitl]); symr = SymbolIndex(seq[curr->emitr]); score += log(cm->nd[curr->nodeidx].tmx[MATP_ST][StatetypeIndex(curr->nxtl->type)]); score += log(cm->nd[curr->nodeidx].mp_emit[syml][symr]); score += log(16.0); /* for log-odds */ PushTracestack(dolist, curr->nxtl); } else if (curr->type == uMATL_ST) { syml = SymbolIndex(seq[curr->emitl]); score += log(cm->nd[curr->nodeidx].tmx[MATL_ST][StatetypeIndex(curr->nxtl->type)]); score += log(cm->nd[curr->nodeidx].ml_emit[syml]); score += log(4.0); /* for log-odds */ PushTracestack(dolist, curr->nxtl); } else if (curr->type == uMATR_ST) { symr = SymbolIndex(seq[curr->emitr]); score += log(cm->nd[curr->nodeidx].tmx[MATR_ST][StatetypeIndex(curr->nxtl->type)]); score += log(cm->nd[curr->nodeidx].mr_emit[symr]); score += log(4.0); /* for log-odds */ PushTracestack(dolist, curr->nxtl); } else /* DEL or BEGIN state */ { score += log(cm->nd[curr->nodeidx].tmx[DEL_ST][StatetypeIndex(curr->nxtl->type)]); PushTracestack(dolist, curr->nxtl); } } FreeTracestack(dolist); score = score / log(2.0); /* convert to bits */ return score; } tRNAscan-SE-2.0/src/score_main.c0000644000543100007160000001412711021467305015710 0ustar pchanlowelab/* score_main.c * Fri Feb 18 10:31:48 1994 * * main() for scoring test sequences with a model. * Also, can print out alignments of model to sequence so * that the pairwise assignments can be seen. */ #include #include #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "squid.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "ag:ms" static char usage[] = "\ Usage: coves [-options] \n\ where options are:\n\ -a : show all pairs, not just Watson-Crick\n\ -g : set expected background GC composition (default 0.5)\n\ -m : mountain representation of structural alignment\n\ -s : secondary structure string representation of \n\ structural alignment\n"; static char banner[] = "\ coves - scoring and structure prediction of RNA sequences\n\ using a covariance model"; int main(int argc, char **argv) { char *seq; /* a sequence to score */ SQINFO sqinfo; /* info about seq */ char *seqfile; /* sequence file */ int fmt; /* format of sequence file */ SQFILE *dbfp; /* open sequence file for reading */ char *cmfile; /* file containing covariance model */ struct cm_s *cm; /* model */ double score; /* score of alignment */ struct trace_s *tr; /* traceback of alignment */ struct align_s *ali; /* alignment of seq to model */ char *aseq; /* "aligned" sequence string */ char *khstruct; /* secondary structure string */ char buffer[61]; /* output buffer for structures */ int len; /* length of aseq, khstruct */ int apos; /* position in aseq, khstruct */ double rfreq[ALPHASIZE]; /* expected background symbol frequencies */ struct istate_s *icm; /* integer log odds model */ int statenum; /* # of states in icm */ int do_khstructure; /* TRUE if we print a structure string */ int do_mountain; /* TRUE if we show a mountain structure */ int watsoncrick; /* TRUE if only canonical pairs are indicated */ double gcfrac; /* expected background GC fraction */ #ifdef MEMDEBUG unsigned long histid1, histid2, orig_size, curr_size; #endif int optc; extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ /*********************************************** * Parse command line ***********************************************/ do_khstructure = FALSE; do_mountain = FALSE; watsoncrick = TRUE; gcfrac = 0.5; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'a': watsoncrick = FALSE; break; case 'g': gcfrac = (double) atof(optarg); break; case 'm': do_mountain = TRUE; break; case 's': do_khstructure = TRUE; break; case 'h': printf("%s\n version %s (%s)\n%s\n", banner, RELEASE, RELEASEDATE, usage); exit(0); default: Die("unrecognized option %c\n", optc); } if (argc - optind != 2) Die("%s\n", usage); cmfile = argv[argc-2]; seqfile = argv[argc-1]; if (! SeqfileFormat(seqfile, &fmt, NULL)) Die("Failed to determine format of sequence database %s", seqfile); if ((dbfp = SeqfileOpen(seqfile, fmt, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); if (! ReadCM(cmfile, &cm)) Die("Failed to read model from file %s", cmfile); rfreq[1] = rfreq[2] = gcfrac / 2.; rfreq[0] = rfreq[3] = (1. - gcfrac) / 2.; if (! RearrangeCM(cm, rfreq, &icm, &statenum)) Die("failed to make integer log odds model"); /*********************************************** * Print banner ***********************************************/ puts(banner); printf(" version %s, %s\n\n", RELEASE, RELEASEDATE); printf("---------------------------------------------------\n"); printf("Database to search/score: %s\n", seqfile); printf("Model: %s\n", cmfile); printf("GC%% of background model: %.0f%%\n", (gcfrac*100.)); printf("---------------------------------------------------\n"); puts(""); /*********************************************** * Score each sequence ***********************************************/ #ifdef MEMDEBUG orig_size = malloc_size(&histid1); #endif while (ReadSeq(dbfp, fmt, &seq, &sqinfo)) { char *prepseq; prepseq = Strdup(seq); PrepareSequence(prepseq); if (! ViterbiAlign(icm, statenum, prepseq, &score, &tr)) Die("ViterbiAlign() failed on sequence %s", sqinfo.name); free(prepseq); printf("%6.2f bits : %s\n", score, sqinfo.name); if (do_khstructure || do_mountain) { if (! Trace2ali(seq, tr, watsoncrick, &ali)) Die("Trace2ali failed"); if (do_khstructure) { if (! Align2kh(ali, &aseq, &khstruct)) Die("Align2kh failed\n"); /* Print out the sequence and structure */ len = strlen(aseq); buffer[60] = '\0'; for (apos = 1; apos <= len; apos += 60) { strncpy(buffer, aseq + apos - 1, 60); printf(" %10s %s\n", sqinfo.name, buffer); strncpy(buffer, khstruct + apos - 1, 60); printf(" %10s %s\n", sqinfo.name, buffer); puts(""); } free(aseq); free(khstruct); } if (do_mountain) { PrintAliLandscape(stdout, cm, ali); puts(""); } Free_align(ali); } FreeSequence(seq, &sqinfo); #ifdef MEMDEBUG curr_size = malloc_size(&histid2); if (curr_size != orig_size) { Warn("malloc-debug: current size %ul, starting size %ul\n", curr_size, orig_size); malloc_list(2,histid1, histid2); } #endif } SeqfileClose(dbfp); FreeCM(cm); free(icm); return 0; } tRNAscan-SE-2.0/src/instman.pl0000644000543100007160000000154411021467312015430 0ustar pchanlowelab#! /usr/bin/perl # Sean Eddy, Wed Jul 29 15:24:43 1992 # instman - "cp" replacement for formatting and installing man pages # Requires that GNU groff is installed: geqn, gtbl, groff. # # Usage: instman # $usage = "Usage: instman \n where is a man-formatted input file,\n and is the name to store the formatted file under\n (such as /usr/catman/local/cat1/foo)\n"; if ($#ARGV != 1) { die "Incorrect argument number.\n$usage"; } $man = shift(@ARGV); $dest = shift(@ARGV); print "Reading $man, installing as $dest\n"; die "Error: can't read $man.\n$usage" unless -r $man; die "Error: can't write $dest.\n$usage" unless -w $man; die "Error: $dest is a directory, not a file name\n$usage" if -d $dest; system "geqn $man | gtbl | groff -man -Tascii > $dest"; tRNAscan-SE-2.0/src/maspar.h0000644000543100007160000000051611021467306015057 0ustar pchanlowelab/* Header file specifically for MasPar parallelized version */ /* These define's affect mpcovels. */ #define NYPROC 64 /* how many rows of processors (nyproc) */ #define BLOCKSIZE 128 /* size of sequence blocks sent to DPU */ #define VPENUM 3 /* # of virtual PE's per PE. N = NYPROC * VPENUM -1 */ tRNAscan-SE-2.0/src/getopt.c0000644000543100007160000001467311021467312015077 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ #include #include #include #include "squid.h" /* Function: Getopt() * * Purpose: Portable command line option parsing with abbreviated * option switches. Replaces UNIX getopt(). Using UNIX getopt() * hinders portability to non-UNIX platforms, and getopt() * is also limited to single letter options. * * Getopt() implements a superset of UNIX getopt(). * All of getopt()'s single-character switch behavior * is emulated, and "--" by itself terminates the options. * Additionally, Getopt() provides extended switches * like "--youroptionhere", and Getopt() type checks * arguments. * * Extended options must start with "--", as in "--option1". * Normal options must start with "-", as in "-o". * Normal options may be concatenated, as in "-a -b" == "-ab". * * See bottom of this .c file after #fdef GETOPT_TESTDRIVER * for an example of calling Getopt(). * * Args: argc - from main(). number of elems in argv. * argv - from main(). argv[0] is the name of the command. * opt - array of opt_s structures, defining option switches * nopts - number of switches in opt * usage - a (possibly long) string to print if usage error. * ret_optind - RETURN: the index in argv[] of the next * valid command-line token. * ret_optname- RETURN: ptr to the name of option switch * seen, or NULL if no option was seen. * ret_optarg - RETURN: ptr to the optional argument, if any; * NULL if option takes no argument. * * Return: 1 if a valid option was parsed. * 0 if no option was found, and command-line parsing is complete. * Die()'s here if an error is detected. */ int Getopt(int argc, char **argv, struct opt_s *opt, int nopts, char *usage, int *ret_optind, char **ret_optname, char **ret_optarg) { int i; int arglen; int nmatch; static int optind = 1; /* init to 1 on first call */ static char *optptr = NULL; /* ptr to next valid switch */ int opti; /* Check to see if we've run out of options. */ if (optind >= argc || argv[optind][0] != '-') { *ret_optind = optind; *ret_optarg = NULL; *ret_optname = NULL; return 0; } /* Check to see if we're being told that this is the end * of the options. */ if (strcmp(argv[optind], "--") == 0) { optind++; *ret_optind = optind; *ret_optname = NULL; *ret_optarg = NULL; return 0; } /* We have a real option. Find which one it is. * We handle single letter switches "-o" separately * from full switches "--option", based on the "-" vs. "--" * prefix -- single letter switches can be concatenated. */ /* full option */ if (optptr == NULL && strncmp(argv[optind], "--", 2) == 0) { optptr = NULL; /* full options can't concantenate */ arglen = strlen(argv[optind]); nmatch = 0; for (i = 0; i < nopts; i++) if (opt[i].single == FALSE && strncmp(opt[i].name, argv[optind], arglen) == 0) { nmatch++; opti = i; } if (nmatch > 1) Die("Option \"%s\" is ambiguous; please be more specific.\n%s", argv[optind], usage); if (nmatch == 0) Die("No such option \"%s\".\n%s", argv[optind], usage); *ret_optname = opt[opti].name; /* Set the argument, if there is one */ if (opt[opti].argtype != ARG_NONE) { if (optind+1 >= argc) Die("Option %s requires an argument\n%s", opt[opti].name, usage); *ret_optarg = argv[optind+1]; optind+=2; } else /* ARG_NONE */ { *ret_optarg = NULL; optind++; } } else /* else, a single letter option "-o" */ { /* find the option */ if (optptr == NULL) optptr = argv[optind]+1; for (opti = -1, i = 0; i < nopts; i++) if (opt[i].single == TRUE && *optptr == opt[i].name[1]) { opti = i; break; } if (opti == -1) Die("No such option \"%c\".\n%s", *optptr, usage); *ret_optname = opt[opti].name; /* set the argument, if there is one */ if (opt[opti].argtype != ARG_NONE) { if (*(optptr+1) != '\0') /* attached argument */ { *ret_optarg = optptr+1; optind++; } else if (optind+1 < argc) /* unattached argument */ { *ret_optarg = argv[optind+1]; optind+=2; } else Die("Option %s requires an argument\n%s", opt[opti].name, usage); optptr = NULL; /* can't concatenate after an argument */ } else /* ARG_NONE */ { *ret_optarg = NULL; if (*(optptr+1) != '\0') /* concatenation */ optptr++; else { optind++; /* move to next field */ optptr = NULL; } } } /* Type check the argument, if there is one */ if (opt[opti].argtype != ARG_NONE) { if (opt[opti].argtype == ARG_INT && ! IsInt(*ret_optarg)) Die("Option %s requires an integer argument\n%s", opt[opti].name, usage); else if (opt[opti].argtype == ARG_FLOAT && ! IsReal(*ret_optarg)) Die("Option %s requires a numerical argument\n%s", opt[opti].name, usage); else if (opt[opti].argtype == ARG_CHAR && strlen(*ret_optarg) != 1) Die("Option %s requires a single-character argument\n%s", opt[opti].name, usage); /* ARG_STRING is always ok, no type check necessary */ } *ret_optind = optind; return 1; } #ifdef GETOPT_TESTDRIVER struct opt_s OPTIONS[] = { { "--test1", FALSE, ARG_INT }, { "--test2", FALSE, ARG_FLOAT }, { "--test3", FALSE, ARG_STRING }, { "--test4", FALSE, ARG_CHAR }, { "-a", TRUE, ARG_NONE }, { "-b", TRUE, ARG_INT }, }; #define NOPTIONS (sizeof(OPTIONS) / sizeof(struct opt_s)) int main(int argc, char **argv) { int optind; char *optarg; char *optname; while (Getopt(argc, argv, OPTIONS, NOPTIONS, "Usage/help here", &optind, &optname, &optarg)) { printf("index: %d name: %s argument: %s\n", optind, optname, optarg); } } #endif /*GETOPT_TESTDRIVER*/ tRNAscan-SE-2.0/src/emit_main.c0000644000543100007160000001111311021467304015522 0ustar pchanlowelab/* emit_main.c * main() for emitting sequences from a stored model * written as a debugging aid * * 1.0: SRE, Tue Jun 15 09:32:43 1993 * 2.0: SRE, Fri Sep 10 08:06:37 1993 */ #include #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "abls:L" static char usage[] = "\ Usage: covee [-options] \n\ where options are:\n\ -a : annotate all pairs, not just canonical ones\n\ -b : emit single most probable sequence\n\ -l : print as mountain landscape\n\ -s : set seed for random()\n\ EXPERIMENTAL OPTIONS:\n\ -L : calculate expected length distributions for states\n"; static char banner[] = "covee: emit sequences from a covariance model"; int main(int argc, char **argv) { char *cmfile; /* file to read model from */ struct cm_s *cm; /* model */ int i; /* counter for sequences */ char *seq; /* generated sequence */ char *khseq; /* generated structure */ struct align_s *ali; /* generated "alignment" */ int emitnum; /* number of sequences to emit */ int seed; /* seed for random number generator */ int do_best; /* TRUE if generating only best seq */ int do_landscape; /* TRUE if printing as landscape */ int watsoncrick; /* TRUE to annotate only canonical pairs */ int do_lengths; /* TRUE to do length distributions */ int optc; extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ /*********************************************** * Parse command line ***********************************************/ emitnum = 20; seed = (int) time (0); do_best = FALSE; do_landscape = FALSE; watsoncrick = TRUE; do_lengths = FALSE; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'a': watsoncrick = FALSE; break; case 'b': do_best = TRUE; break; case 'l': do_landscape = TRUE; break; case 's': seed = atoi(optarg); break; case 'L': do_lengths = TRUE; break; default: Die("Error: unrecognized option %c\n", optc); } if (argc - optind != 1) Die("Wrong number of arguments.\n%s", usage); cmfile = argv[optind]; sre_srandom((unsigned) seed); /*********************************************** * Read in the model ***********************************************/ if (! ReadCM(cmfile, &cm)) Die("Failed to read model from file %s\n", cmfile); /*********************************************** * Generate sequences from model and print them. ***********************************************/ puts(banner); printf(" version %s, %s\n\n", RELEASE, RELEASEDATE); if (do_lengths) { struct pstate_s *pcm; int statenum; double **lmx; int *min, *max; int y; MakePCM(cm, &pcm, &statenum); NormalizePCM(pcm, statenum); LengthDistribution(pcm, statenum, 200, &lmx); LengthBounds(lmx, statenum, 200, 1.0e-6, &min, &max); for (y = 0; y < statenum; y++) printf("%4d %4d %4d (%4d) %8.8f %s\n", y, min[y], max[y], max[y]-min[y]+1, (float) (max[y]-min[y]+1) / 200.0, UstatetypeName(pcm[y].statetype)); Free2DArray(lmx, statenum); free(min); free(max); free(pcm); } else if (do_best) { if (! EmitBestSequence(cm, watsoncrick, &ali, &khseq, &seq)) Die("EmitBestSequence() failed"); if (do_landscape) { if (! PrintAliLandscape(stdout, cm, ali)) Warn("PrintAliLandscape failed\n"); } else { printf("%s\n", seq); printf("%s\n", khseq); puts(""); } free(ali); free(khseq); free(seq); } else { for (i = 0; i < emitnum; i++) { if (! EmitSequence(cm, watsoncrick, &ali, &khseq, &seq)) Die("failed to generate a sequence from the model."); if (do_landscape) PrintAliLandscape(stdout, cm, ali); else { printf("seq %2d: %s\n", i, seq); printf(" %s\n", khseq); puts(""); } free(ali); free(khseq); free(seq); } } /*********************************************** * Cleanup and exit ***********************************************/ FreeCM(cm); return 0; } tRNAscan-SE-2.0/src/fast-dbviterbi.c0000644000543100007160000003622111021467304016474 0ustar pchanlowelab/* fast-dbviterbi.c * SRE, Fri Sep 30 15:09:06 1994 * * Search with a covariance model * Fast "banded search" version of dbviterbi.c; subsequence * lengths are bounded by probabilistically determined bounds. * ********** * * To optimize memory access patterns, the score storage is implemented * as a two-matrix version. amx is the * main storage. bmx is a smaller auxiliary matrix with a different * access pattern, holding scores of BEGIN state alignments; it * is used when calculating BIFURC scores. * * amx is [j = 0..1] [y = 0..statenum] [diff = 0..j] * diff == 0 is for off-diagonal boundary conditions (this is why diff is shifted +1) * diff == 1 is for the diagonal, i==j * We only need to keep two j rows in memory (current and previous). * Note that this is yet *another* memory access pattern and it's different * from dbviterbi.c!!! * * bmx is [y = 0..statenum] [j = 0..N] [ diff = 0..j] * a j,diff matrix exists only where y is a BEGIN state * * The 2.0 implementation allows variable storage per node rather * than storing and calculating a fixed max number of states per node, * which should save up to 2x in both time and space. * * An optimization is made which requires END states to be explicitly * added, so statenum (the number of states in the integer model) * is *inclusive* of ENDs. */ #include #include #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static int allocate_mx(struct istate_s *icm, int statenum, int window, int ****ret_amx, int ****ret_bmx); static int init_mx (struct istate_s *icm, int statenum, int N, int ***amx, int ***bmx); static int recurse_mx (struct istate_s *icm, int statenum, int *minb, int *maxb, char *seq, int seqlen, int window, int ***amx, int ***bmx, int ithresh, int (*gotone_f)(int, int, double)); static void free_mx (int ***amx, int ***bmx, int statenum, int window); /* Function: FastViterbiScan() * * Purpose: Scanning version of the Viterbi alignment algorithm, * for finding matches in a long sequence. * * Args: icm - the model to align sequence to (int log-odds) * statenum - length of model in states (inclusive of END) * minb - minimum length bounds for states * maxb - maximum length bounds for states * seq - sequence to align model to * window - scanning window size (nucleotides) * thresh - scores above this are reported through gotone_f() * gotone_f - function which gets told about a match * * Return: 1 on success, 0 on failure. */ int FastViterbiScan(struct istate_s *icm, int statenum, int *minb, int *maxb, char *seq, int window, double thresh, int (*gotone_f)(int, int, double)) { int ***amx; /* the main score matrix */ int ***bmx; /* the BEGIN score matrix */ int N; /* length of sequence */ int ithresh; /* thresh, converted and scaled to int */ N = strlen(seq); seq--; /* convert to 1..N. Ugh! */ ithresh = (int) (thresh * INTPRECISION); if (! allocate_mx(icm, statenum, window, &amx, &bmx)) return 0; #ifdef DEBUG printf("allocated matrices\n"); #endif if (! init_mx(icm, statenum, window, amx, bmx)) return 0; #ifdef DEBUG printf("matrices initialized\n"); #endif if (! recurse_mx(icm, statenum, minb, maxb, seq, N, window, amx, bmx, ithresh, gotone_f)) return 0; #ifdef DEBUG printf("recursion finished\n"); #endif /* terminate scanning hit reporting */ ReportScanHit(-1,-1, 0.0, gotone_f); free_mx(amx, bmx, statenum, window); return 1; } /* Function: allocate_mx() * * Purpose: Malloc space for the score matrices. * amx and atr are indexed as j, i, y. * bmx and btr are indexed as k, j, i. * In the two sequence dimensions j, i they are * diagonal (+1 off diagonal) matrices with * rows j = 0..N, i = 1..j+1. * In the node dimension k bmx and btr are k = 0..M. * In the state dimension y amx and atr are y = 0..numstates. * * Args: icm - the int, log-odds, state-based model * statenum - number of states in model * window - length of scanning window * ret_amx - RETURN: main score matrix * ret_bmx - RETURN: BEGIN score matrix * * Return: Ptr to allocated scoring matrix, or * dies and exits. */ static int allocate_mx(struct istate_s *icm, int statenum, int window, int ****ret_amx, int ****ret_bmx) { int ***amx; int ***bmx; int diag, j, y; /* Main matrix, amx: fastest varying index is y (j,i,y) * we only keep two rows for j, 0 and 1. */ /* malloc for j = 0..1 rows */ if ((amx = (int ***) malloc (2 * sizeof(int **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (j = 0; j <= 1; j++) /* loop over rows j = 0..1 */ { /* malloc for diag = 0..window cols */ if ((amx[j] = (int **) malloc ((window + 1) * sizeof(int *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* loop over cols diag = 0..window */ for (diag = 0; diag <= window; diag++) /* malloc for y = 0..statenum-1 decks */ if ((amx[j][diag] = (int *) malloc ((statenum) * sizeof (int ))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } /* B auxiliary matrix: fastest varying index is diag (y,j,diag) * bmx keeps score decks for BEGIN states */ /* 0..statenum-1 decks */ if ((bmx = (int ***) malloc (statenum * sizeof(int **))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); for (y = 0; y < statenum; y++) { bmx[y] = NULL; /* we keep score info for BEGIN states */ if (icm[y].statetype == uBEGIN_ST) { /* j= 0..window-1 rows */ if ((bmx[y] = (int **) malloc ((window) * sizeof(int *))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); /* diff = 0..window columns */ for (j = 0; j < window; j++) if ((bmx[y][j] = (int *) malloc ((window+1) * sizeof(int ))) == NULL) Die("Memory allocation error in %s line %d", __FILE__, __LINE__); } } *ret_amx = amx; *ret_bmx = bmx; return 1; } /* Function: free_mx() * * Purpose: Free the space allocated to the scoring and traceback matrices. * Precisely mirrors the allocations above in allocate_cvmx(). * * Return: (void) */ static void free_mx(int ***amx, int ***bmx, int statenum, int window) { int diag, j, y; /* Free the main matrix, amx: * amx[j][i][y] = [0..1] [0..window] [0..statenum-1] */ for (j = 0; j <= 1; j++) { for (diag = 0; diag <= window; diag++) free(amx[j][diag]); free(amx[j]); } free(amx); /* Free the auxiliary matrix, bmx * bmx[y][j][i] = [0..statenum-1] [0..window] [0..window] */ for (y = 0; y < statenum; y++) { if (bmx[y] != NULL) { for (j = 0; j < window; j++) free(bmx[y][j]); free(bmx[y]); } } free(bmx); } /* Function: init_mx() * * Purpose: Initialization of the scoring matrices. We initialize the off-diagonal, * the diagonal, and the "floor" (end states) of the cube. * * Return: 1 on success, 0 on failure. */ static int init_mx(struct istate_s *icm, /* integer model */ int statenum, /* number of states in icm */ int window, /* size of scanning window on sequence */ int ***amx, int ***bmx) { int diag, j, y; /* counters for indices over the cvmx */ int ynext; /* index of next state k+1 */ int *beam; /* z-axis vector of numbers in amx */ /* Init the whole amx to -Infinity. We do this with memcpy, trying * to be fast. We fill in j=0,diag=0 by hand, then memcpy() the other * columns. */ for (y = 0; y < statenum; y++) amx[0][0][y] = amx[1][0][y] = NEGINFINITY; for (diag = 1; diag <= window; diag++) { memcpy(amx[0][diag], amx[0][0], statenum * sizeof(int)); memcpy(amx[1][diag], amx[0][0], statenum * sizeof(int)); } /* Init the whole bmx to -Inf. We know state 0 is a begin (it's ROOT), so we * start there, and memcpy rows as needed. */ for (diag = 0; diag <= window; diag++) bmx[0][0][diag] = NEGINFINITY; for (j = 1; j < window; j++) memcpy(bmx[0][j], bmx[0][0], (window+1) * sizeof(int)); for (y = 1; y < statenum; y++) if (bmx[y] != NULL) for (j = 0; j < window; j++) memcpy(bmx[y][j], bmx[0][0], (window+1) * sizeof(int)); /* Init the off-diagonal (j = 0..window-1; diag == 0) with -log P scores. * End state = 0; * del, bifurc states are calc'ed * begin states same as del's * THIS IS WASTEFUL AND SHOULD BE CHANGED. */ for (j = 0; j < window; j++) for (y = statenum-1; y >= 0; y--) { /* Set the alignment of END states to the off-diagonal (diag = 0) * to be zero, and never touch them again. */ if (icm[y].statetype == uEND_ST) amx[j%2][0][y] = 0; else if (icm[y].statetype == uBIFURC_ST) amx[j%2][0][y] = bmx[icm[y].tmx[0]][j][0] + bmx[icm[y].tmx[1]][j][0]; else if (icm[y].statetype == uDEL_ST || icm[y].statetype == uBEGIN_ST) { /* only calc DEL-DEL and BEGIN-DEL transitions. Since * we optimized the state transition tables, removing * the unused ones, we don't know where the number * for "to DEL" is! But we can find it, because it'll * be the connection to a non-infinite score */ beam = amx[j%2][0] + y + icm[y].offset; for (ynext = 0; ynext < icm[y].connectnum; ynext++) { if (*beam != NEGINFINITY) amx[j%2][0][y] = *beam + icm[y].tmx[ynext]; beam++; } } /* make a copy into bmx if y is a BEGIN */ if (icm[y].statetype == uBEGIN_ST) bmx[y][j][0] = amx[j%2][0][y]; } return 1; } /* Function: recurse_mx() * * Purpose: Carry out the fill stage of the dynamic programming * algorithm. After each j row is filled in, check the score * of best full alignment ending at this row; if greater * than threshold (ithresh), report it. * * Returns: 1 on success, 0 on failure. */ static int recurse_mx(struct istate_s *icm, /* integer, state-form model */ int statenum, /* number of states in icm */ int *minb, int *maxb, char *seq, /* sequence, 1..seqlen */ int seqlen, /* length of seq */ int window, /* length of scanning window on seq */ int ***amx, /* main scoring matrix */ int ***bmx, /* bifurc scoring matrix */ int ithresh, /* reporting threshold */ int (*gotone_f)(int, int, double)) { int i, j, y; /* indices for 3 dimensions */ int aj; /* 0 or 1, index for j in A matrix */ int bj; /* 0..window-1, index for j in B matrix */ int diff; /* loop counter for difference: diff = j-i + 1 */ int symi, symj; /* symbol indices for seq[i], seq[j] */ int sc; /* tmp for a score */ int ynext; /* index of next state y */ int bestdiff, bestscore; int *beam; /* ptr to a beam (z-axis vector) */ int leftdiff; /* diff coord of BEGIN_L of a bifurc */ int leftj; /* j coord of BEGIN_L of a bifurc */ int **left_p; /* pointer into whole 2D deck of BEGINL's of a bifurc */ int *right_p; /* ptr into row of BEGIN_R's of a bifurc */ int *scp; /* score pointer: ptr into beam of scores being calc'ed */ struct istate_s *st; /* state pointer: ptr at current state in icm */ int *tmx; int emitsc; for (j = 1; j <= seqlen; j++) { aj = j % 2; /* 0 or 1 index in amx */ bj = j % window; /* 0..window-1 index in bmx */ symj = SymbolIndex(seq[j]); for (y = statenum-1; y >= 0; y--) { st = &icm[y]; for (diff = minb[y]; diff <= maxb[y] && diff <= j; diff++) { i = j - diff + 1; symi = SymbolIndex(seq[i]); scp = &amx[aj][diff][y]; if (st->statetype != uBIFURC_ST) /* a normal (non-BIFURC) state */ { /* Connect the "beam" pointer to the appropriate * starting place in the ynext scores we're connecting * y to */ switch (st->statetype) { case uBEGIN_ST: case uDEL_ST: beam = amx[aj][diff]; emitsc = 0; break; case uMATP_ST: /* !aj toggles from 0 to 1 and vice versa */ if (diff == 1) continue; beam = amx[!aj][diff-2]; emitsc = st->emit[symi * ALPHASIZE + symj]; break; case uMATR_ST: case uINSR_ST: beam = amx[!aj][diff-1]; emitsc = st->emit[symj]; break; case uMATL_ST: case uINSL_ST: beam = amx[aj][diff-1]; emitsc = st->emit[symi]; break; case uEND_ST: continue; default: Die("no such state type %d", st->statetype); } beam += y + st->offset; tmx = st->tmx; /* Init for ynext == 0 case */ *scp = *beam + *tmx; /* Calculate remaining cases */ for (ynext = 1; ynext < st->connectnum; ynext++) { beam++; tmx++; if (*beam > *scp) { sc = *beam + *tmx; if (sc > *scp) *scp = sc; } } /* Add emission scores now */ *scp += emitsc; /* Make a copy into bmx, btr if necessary */ if (st->statetype == uBEGIN_ST) bmx[y][bj][diff] = *scp; } /* end block of normal state stuff */ else /* a BIFURC state */ { leftdiff = diff; leftj = bj; right_p = bmx[st->tmx[1]][leftj]; left_p = bmx[st->tmx[0]]; /* init w/ case that left branch emits it all */ *scp = left_p[leftj][leftdiff] + *right_p; while (leftdiff > 0) { leftdiff--; leftj = leftj ? leftj-1 : window-1; /* scan window wraparound */ right_p++; sc = left_p[leftj][leftdiff] + *right_p; if (sc > *scp) *scp = sc; } } } /* end loop over states */ } /* end loop over diff */ /* We've completed a row. Now we can examine the scores in diff, * aj, ROOT_ST to decide whether to report this row. If we do, * we report the 1..seqlen i, j coords of the matching subsequence * in seq, as well as the score converted to double-precision bits. */ bestdiff = 1; bestscore = bmx[0][bj][1]; for (diff = 2; diff <= window; diff++) if (bmx[0][bj][diff] > bestscore) { bestscore = bmx[0][bj][diff]; bestdiff = diff; } if (bestscore > ithresh) if (! ReportScanHit(j - bestdiff + 1, j, (double)(bestscore / INTPRECISION), gotone_f)) Warn("caller ignored report of a match!"); } /* end loop over j */ return 1; } tRNAscan-SE-2.0/src/msf.c0000644000543100007160000001036111021467305014352 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* msf.c * SRE, Sun Jul 11 16:17:32 1993 * * Export of GCG MSF multiple sequence alignment * formatted files. * */ #include #include #include #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: WriteMSF() * * Purpose: Write aseqs, names, weights to an open fp, * in GCG MSF format. The alignment must * be flushed (all aseqs the same length, padded * with gaps) * * Returns 1 on success. Returns 0 on failure, and sets * squid_errno to indicate the cause. */ int WriteMSF(FILE *fp, /* open fp for writing */ char **aseqs, /* aligned sequences */ int num, struct aliinfo_s *ainfo) { int still_going; /* True if writing another block */ int idx; /* counter for sequences */ int pos; /* position counter */ int namelen; /* maximum name length used */ int len; /* tmp variable for name lengths */ char buffer[51]; /* buffer for writing seq */ char **sqptr; /* ptrs into each sequence */ int charcount; /* num. symbols we're writing */ float weight; /* allocate seq pointers that we'll move across each sequence */ if ((sqptr = (char **) malloc (num * sizeof(char *))) == NULL) { squid_errno = SQERR_MEM; return 0; } /* set sqptrs to start of each seq */ for (idx = 0; idx < num; idx++) sqptr[idx] = aseqs[idx]; /* calculate max namelen used */ namelen = 0; for (idx = 0; idx < num; idx++) if ((len = strlen(ainfo->sqinfo[idx].name)) > namelen) namelen = len; /***************************************************** * Write the title line *****************************************************/ fprintf(fp, "\n"); /* ack! we're writing bullshit here */ fprintf(fp, " MSF: 000 Type: X Check: 0000 ..\n"); fprintf(fp, "\n"); /***************************************************** * Write the names *****************************************************/ for (idx = 0; idx < num; idx++) { weight = 1.0; if (ainfo->sqinfo[idx].flags & SQINFO_WGT) weight = ainfo->sqinfo[idx].weight; fprintf(fp, " Name: %-*.*s Len: %5d Check: %5d Weight: %.4f\n", namelen, namelen, ainfo->sqinfo[idx].name, ainfo->alen, GCGchecksum(aseqs[idx], ainfo->alen), weight); } fprintf(fp, "\n"); fprintf(fp, "//\n"); fprintf(fp, "\n"); /***************************************************** * Write the sequences *****************************************************/ still_going = 1; while (still_going) { still_going = 0; for (idx = 0; idx < num; idx++) { fprintf(fp, "%-*.*s ", namelen, namelen, ainfo->sqinfo[idx].name); /* get next line's worth of 50 from seq */ strncpy(buffer, sqptr[idx], 50); buffer[50] = '\0'; charcount = strlen(buffer); /* is there still more to go? */ if (charcount == 50 && sqptr[idx][50] != '\0') still_going = 1; /* shift the seq ptr by a line */ sqptr[idx] += charcount; /* draw the sequence line */ pos = 0; while (pos < charcount) { if (isgap(buffer[pos])) fputc('.', fp); else fputc(buffer[pos], fp); pos++; if (!(pos % 10)) fputc(' ', fp); } fputc('\n', fp); } /* put blank line between blocks */ fputc('\n', fp); } free(sqptr); return 1; } void FlushAlignment(char **aseqs, int num, int *ret_alen) { int len, alen; int idx; int apos; alen = strlen(aseqs[0]); for (idx = 1; idx < num; idx++) if ((len = strlen(aseqs[idx])) > alen) alen = len; for (idx = 0; idx < num; idx++) { if ((aseqs[idx] = (char *) realloc (aseqs[idx], sizeof(char) * (alen+1))) == NULL) Die("realloc failed"); for (apos = strlen(aseqs[idx]); apos < alen; apos++) aseqs[idx][apos] = '.'; aseqs[idx][apos] = '\0'; } *ret_alen = alen; } tRNAscan-SE-2.0/src/debug.c0000644000543100007160000001234311704460714014662 0ustar pchanlowelab/* debug.c * Fri Jan 28 14:10:59 1994 * * Code specifically for debugging the package. */ #include #include "structs.h" #include "funcs.h" /* Function: UstatetypeName() * * Purpose: "Ustatetypes" -- unique state types -- are used in the * integer-style models of the alignment algorithms. * Given such a flag, return a string representation of * the unique statetype. */ char * UstatetypeName(int ustatetype) { switch (ustatetype) { case uDEL_ST: return "uDEL_ST"; case uMATP_ST: return "uMATP_ST"; case uMATL_ST: return "uMATL_ST"; case uMATR_ST: return "uMATR_ST"; case uINSL_ST: return "uINSL_ST"; case uINSR_ST: return "uINSR_ST"; case uBEGIN_ST: return "uBEGIN_ST"; case uEND_ST: return "uEND_ST"; case uBIFURC_ST: return "uBIFURC_ST"; default: return "Unknown state type"; } } /* Function: StatetypeName() * * Purpose: Given a statetype integer, return a string representation * for that statetype. */ char * StatetypeName(int statetype) { switch (statetype) { case DEL_ST: return "DEL/BEG/BIF/END"; case MATP_ST: return "MATP_ST"; case MATL_ST: return "MATL_ST"; case MATR_ST: return "MATR_ST"; case INSL_ST: return "INSL_ST"; case INSR_ST: return "INSR_ST"; default: return "Unknown State"; } } /* Function: NodetypeName() * * Purpose: Given a node type integer, return a printable name * for the node type. */ char * NodetypeName(int nodetype) { switch (nodetype) { case BIFURC_NODE: return "BIF/END NODE"; case MATP_NODE: return "MATP_NODE"; case MATL_NODE: return "MATL_NODE"; case MATR_NODE: return "MATR_NODE"; case BEGINL_NODE: return "BEGINL_NODE"; case BEGINR_NODE: return "BEGINR_NODE"; case ROOT_NODE: return "ROOT_NODE"; default: return "Unknown Node"; } } /* Function: PrintViterbiAMX() * * Purpose: Print out a normal main matrix from the original * Viterbi alignment algorithm. * */ void PrintViterbiAMX(FILE *fp, /* usually stderr/stdout */ struct istate_s *icm, /* integer model */ int statenum, /* length of model in states */ char *seq, /* sequence, 1..N */ int N, /* length of seq */ int ***amx) /* 'A' matrix */ { int diff, j, y; /* indices for three dimensions */ for (y = 0; y < statenum; y++) { fprintf(fp, "### A Matrix for state %d, type %d (%s), from node %d\n", y, icm[y].statetype, UstatetypeName(icm[y].statetype), icm[y].nodeidx); fprintf(fp, " "); for (diff = 0; diff <= N; diff++) fprintf(fp, "%6d ", diff); fprintf(fp, "\n"); for (j = 0; j <= N; j++) { fprintf(fp, "%c %3d ", ((j > 0) ? seq[j] : '*'), j); for (diff = 0; diff <= j; diff++) fprintf(fp, "%6d ", amx[j][diff][y]); fprintf(fp, "\n"); } fprintf(fp, "\n\n"); } } /* Function: PrintTrace() * * Purpose: Debugging tool. Print a traceback tree. */ void PrintTrace(FILE *fp, struct trace_s *tr) { struct tracestack_s *stack; struct trace_s *currtr; stack = InitTracestack(); PushTracestack(stack, tr->nxtl); fprintf(fp, " address emitl emitr nodeidx type nxtl nxtr prv\n"); while ((currtr = PopTracestack(stack)) != NULL) { fprintf(fp, "(%p) %3d %3d %3d %3d %p %p %p %s\n", currtr, currtr->emitl, currtr->emitr, currtr->nodeidx, currtr->type, currtr->nxtl, currtr->nxtr, currtr->prv, UstatetypeName(currtr->type)); if (currtr->nxtr != NULL) PushTracestack(stack, currtr->nxtr); if (currtr->nxtl != NULL) PushTracestack(stack, currtr->nxtl); } FreeTracestack(stack); } /* Function: PrintAli() * * Purpose: Debugging tool. Print out an align_s structure */ void PrintAli(FILE *fp, struct align_s *ali) { struct align_s *curr; for (curr = ali; curr != NULL; curr = curr->nxt) fprintf(fp, "%4d %c %c %4d %s\n", curr->pos, curr->sym, curr->ss, curr->nodeidx, UstatetypeName(curr->type)); } /* Function: PrintICM() * * Purpose: Print an integer-version CM, as used by the alignment * algorithms. */ void PrintICM(FILE *fp, struct cm_s *cm, struct istate_s *icm, int nstates) { int y; int x; for (y = 0; y < nstates; y++) { fprintf(fp, "node %d (%s) state %d (%s)\n", icm[y].nodeidx, NodetypeName(cm->nd[icm[y].nodeidx].type), y, UstatetypeName(icm[y].statetype)); fprintf(fp, " connectnum %d offset %d (connections start at %d)\n", icm[y].connectnum, icm[y].offset, y + icm[y].offset); fprintf(fp, " Transitions: "); for (x = 0; x < icm[y].connectnum; x++) fprintf(fp, "%d ", icm[y].tmx[x]); fputs("\n", fp); fprintf(fp, " Emissions: "); switch (icm[y].statetype) { case uMATP_ST: for (x = 0; x < ALPHASIZE * ALPHASIZE; x++) fprintf(fp, "%d ", icm[y].emit[x]); fputs("\n", fp); break; case uMATR_ST: case uMATL_ST: case uINSR_ST: case uINSL_ST: for (x = 0; x < ALPHASIZE; x++) fprintf(fp, "%d ", icm[y].emit[x]); fputs("\n", fp); break; default: fputs("NONE\n", fp); break; } } } tRNAscan-SE-2.0/src/sstofa.in0000644000543100007160000000235713100451015015245 0ustar pchanlowelab#! @PERL@ if ($#ARGV < 0) { die "\nConvert secondary structure file to fasta format\n", "\nUsage: sstofa \n\n"; } $ss_file = shift; open (SSFILE, $ss_file) || die "Couldn't find $ss_file\n"; open(SEQFILE,">-"); $ct = 0; while ($line = ) { if ($line =~ /^(\S+)\s+(\(\d+\-\d+\))\s+Length:\s(\d+)\sbp/) { $SeqName = $1; $bounds = $2; $SeqLen = $3; } elsif ($line =~ /^Type:\s(\S+)\s+Anticodon:\s(\S+).+Score:\s(\S+)/) { $isotype = $1; $ac = $2; $SeqName .= "-".$isotype.$ac; $score = $3; $SeqDescription = "$bounds $isotype ($ac) $SeqLen bp Sc: $score"; } elsif ($line =~ /pseudogene/) { $SeqDescription .= " Pseudo"; } elsif ($line =~ /^Seq:\s(\S+)$/) { $Seq = $1; &write_fasta($SeqName,$SeqDescription,length($Seq), uc($Seq),SEQFILE); $SeqName = ""; $bounds = ""; $SeqLen = 0; $isotype = ""; $ac = ""; $score = 0.0; $SeqDescription = ""; $Seq = ""; } } # End Main sub write_fasta { local($name, $description, $length, $sequence,*FAHANDLE) = @_; local($pos, $line); print FAHANDLE ">$name $description\n"; for ($pos = 0; $pos < $length; $pos += 60) { $line = substr($sequence,$pos,60); print FAHANDLE $line, "\n"; } 1; } tRNAscan-SE-2.0/src/pavesi.c0000644000543100007160000003252111704453133015060 0ustar pchanlowelab/* eufindtRNA - Eukaryotic tRNA finder * * pavesi.c - functions for finding transcriptional control regions * * C implementation of algorithm described by Pavesi, Conterio, * Bolchi, Dieci, & Ottonello in NAR 22:1247-56 (94) * "Identification of new eukaryotic tRNA genes in genomic DNA * databases by a multistep weight matix analysis of transcriptional * control regions" * * To be used in tRNAscan-SE package to increase sensitivity by * complementing tRNAscan 1.3 first-pass scan * * by Todd MJ Lowe 4/8/96 * * Uses Sean Eddy's function library for biological sequence analysis * (Squid v1.5g) * */ #include #include #include #include "squid.h" #include "eufind_const.h" /* #define NO_AMBIG -use this option to eliminate conservative * calling of 'N's as best possible matches * in tRNAs -- useful for unfinished seqs with many N's */ /* log scores for each position in A Box */ /* six rows are for 1) A, 2) C, 3) G, 4) T, 5) (gap), 6) ambiguous base the ambiguous base value is the MIN (best score) of the ACGT rows */ /* position 17a eliminated since always an empty pos (gap) */ float Abox_Mat[6][ABOX_LEN] = { {-1.268,-3.651,-0.899,-4.749,-5.442,-2.351,-3.363,-0.009,-1.977,-3.497,-5.442, -5.442,-5.442,-2.498,-4.749,-5.442,-0.031,-1.417,-1.180,-1.048,-4.344}, {-3.651,-5.442,-4.056,-2.958,-0.480,-1.073,-0.857,-5.442,-5.442,-1.887,-2.498, -5.442,-5.442,-2.958,-2.224,-5.442,-5.442,-3.363,-1.417,-3.651,-0.393}, {-0.779,-5.442,-0.598,-0.076,-3.651,-1.435,-1.614,-4.749,-0.154,-2.803,-5.442, 0.000,0.000,-3.363,-3.651,-5.442,-3.497,-0.672,-1.012,-0.473,-3.651}, {-1.453,-0.026,-3.651,-4.344,-1.036,-1.125,-1.073,-5.442,-5.442,-0.278,-1.399, -5.442,-5.442,-0.185,-0.827,-2.041,-5.442,-1.551,-2.447,-5.442,-1.253}, {-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-0.412, -5.442,-5.442,-5.442,-0.868,-0.144,-5.442,-5.442,-5.442,-5.442,-5.442}, #ifdef NO_AMBIG {-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245, -3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245} #else {-0.779,-0.026,-0.598,-0.076,-0.480,-1.073,-0.857,-0.009,-0.154,-0.278,-1.399, 0.000,0.000,-0.185,-0.827,-2.041,-0.031,-0.672,-1.012,-0.473,-0.393} #endif }; #define GAP_ROW 4 /* row in ABox mat with Gap weight */ float Bbox_Mat[6][BBOX_LEN] = { {-2.351,-5.442,-2.670,-5.442,-5.442,-1.472,0.000,-0.798,-2.498,-5.442,-3.497}, {-3.245,-5.442,-5.442,-5.442,-0.004,-5.442,-5.442,-2.498,-1.435,-0.009,-0.190}, {-0.175,-0.004,-5.442,-5.442,-5.442,-0.272,-5.442,-2.147,-5.442,-5.442,-3.651}, {-3.651,-5.442,-0.072,0.000,-5.442,-4.749,-5.442,-1.048,-0.393,-5.442,-2.147}, {-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442,-5.442}, #ifdef NO_AMBIG {-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245,-3.245} #else {-0.175,-0.004,-0.072,0.000,-0.004,-0.272,0.000,-0.798,-0.393,-0.009,-0.190} #endif }; #define ABDIST_MAT_SIZE 7 int ABDistIdx_Mat[ABDIST_MAT_SIZE] = {30,36,42,48,54,60,66}; float ABDistSc_Mat[ABDIST_MAT_SIZE] = {-0.46,-1.83,-2.35,-3.24, -4.06,-3.83,-4.75}; #define BTERM_MAT_SIZE 9 int BTermDistIdx_Mat[BTERM_MAT_SIZE] = {17,23,29,35,41,47,53,59,100}; float BTermDistSc_Mat[BTERM_MAT_SIZE] = {-0.54,-1.40,-2.80,-3.36, -3.24,-5.44,-5.44,-4.06,-5.44}; int Init_tRNA(TRNA_TYPE *tRNA) { strcpy(tRNA->iso_type,"???"); strcpy(tRNA->acodon,"???"); tRNA->start = tRNA->end = 0; tRNA->Abox_st = tRNA->Abox_end = tRNA->Abox_gap = 0; tRNA->Bbox_st = tRNA->Bbox_end = tRNA->Term_st = tRNA->acodon_idx= 0; tRNA->intron = tRNA->idno = 0; tRNA->totSc = tRNA->AboxSc = tRNA->BboxSc = -1000; tRNA->ABdistSc = tRNA->TermSc = -100; } int IntEncodeSeq (char *intseq, char *seq, int seqlen) { int i; for (i=0; i BBOX_CUTOFF) { if (verbose) if (strand == 0) { printf("Bbox at %i (End=%d), Sc= %.2f\n",i,i+BBOX_LEN+11, *score); } else { printf("Bbox at %i (End=%d), Sc= %.2f\n",seqlen-i+1, seqlen-(i+BBOX_LEN+11)+1,*score); } *seqidx = i; return 1; } } return 0; } float Get_ABdist_weight(int ABdist) { int ct; if (ABdist < MIN_AB_BOX_DIST) return MAX_PENALTY; for (ct=0; ct < ABDIST_MAT_SIZE; ct++) { if (ABdist <= ABDistIdx_Mat[ct]) return ABDistSc_Mat[ct]; } return MAX_PENALTY; } int GetSecABox(TRNA_TYPE *tRNA, char *seq) { char *seqp; int i, startidx; /* Search for eukaryotic SelCys motif */ startidx = tRNA->Bbox_st - ABOX_LEN - SEC_AB_BOX_DIST - 1; seqp = seq + MAX(0,startidx); for (i=0; i<5; i++, seqp++) { if ((!strncmp(seqp,"GGTC",4) && (seqp[4] == 'T' || seqp[4] == 'C') && (seqp[5] == 'G') && (seqp[6] == 'T' || seqp[6] == 'G') && (seqp[7] == 'G') && (seqp[8] == 'G') && (seqp[9] == 'T'))) { tRNA->Abox_st = MAX(0,startidx+i-SEC_BBOX_DIST_CORR); strcpy(tRNA->iso_type,"SeCe"); return 1; } } /* Search for Prokaryotic SelCys */ startidx = tRNA->Bbox_st - 46 - 1; seqp = seq + MAX(0,startidx); for (i=0; i<16; i++, seqp++) { if ((!strncmp(seqp,"GG",2) && (seqp[2] == 'A' || seqp[2] == 'T') && (seqp[3] == 'C' || seqp[3] == 'T') && (seqp[4] == 'T') && (seqp[5] == 'T') && (seqp[6] == 'C') && (seqp[7] == 'A') && (seqp[8] == 'A') && (seqp[9] == 'A') && (seqp[10] == 'A' || seqp[10] == 'T') && (seqp[11] == 'C') && (seqp[12] == 'C'))) { tRNA->Abox_st = MAX(0,startidx+i-23); strcpy(tRNA->iso_type,"SeCp"); return 1; } } return 0; } int GetBestABox (TRNA_TYPE *tRNA, char *seq, char *iseq, int seqlen, int strand, int verbose, int Max_AB_dist, int prev_Abox_st) { int i, /* sequence position index */ startidx, endidx, abox_end; int j, /* matrix position index */ offset1, offset2, /* offset counters to keep track of gaps */ gapct, /* keeps track of 4 types of 2bp gaps in positions 20a & 20b */ best_gap, /* gapct & offset1 vals for best score so far */ best_offset1; float sc1, sc2, sc3, /* components of total score */ bestsc, /* best score so far */ abdistSc; startidx = MAX(MAX(0,(tRNA->Bbox_st - Max_AB_dist - ABOX_LEN)), prev_Abox_st+2); endidx = MAX(0,(tRNA->Bbox_st - MIN_AB_BOX_DIST - ABOX_LEN +4)); for (i=startidx; i < endidx; i++) { sc1=sc2=sc3=0; /* scoring Abox with weight matrix at tRNA pos 7-16 */ for (j=0; j<=9; j++) { sc1 += Abox_Mat[(int)(iseq[i+j])][j]; } j=10; /* score gap at pos 17 by looking for conserved 'GG' at pos 18 & 19 */ if ((seq[i+j] == 'G')) { /* && (seq[i+j+1] == 'G')) { */ sc2 = Abox_Mat[GAP_ROW][j]; offset1 = 1; } else { sc2 = 0; offset1 = 0; } /* scoring Abox with weight matrix at tRNA pos 18-20 */ for (j=10; (j+offset1) < 14; j++) { sc2 += Abox_Mat[(int)(iseq[i+j])][j+offset1]; } /* score potential gap at 20a & 20b, plus rest of matrix up to position; gapct, enumerates all possible 2bp gaps */ for (gapct=0; gapct<4; gapct++) { j=14-offset1; offset2=0; switch (gapct) { case 0: sc3 = Abox_Mat[(int)(iseq[i+j])][j+offset1+offset2]; j++; sc3 += Abox_Mat[(int)(iseq[i+j])][j+offset1+offset2]; j++; break; case 1: sc3 = Abox_Mat[GAP_ROW][j+offset1+offset2]; offset2++; sc3 += Abox_Mat[(int)(iseq[i+j])][j+offset1+offset2]; j++; break; case 2: sc3 = Abox_Mat[(int)(iseq[i+j])][j+offset1+offset2]; j++; sc3 += Abox_Mat[GAP_ROW][j+offset1+offset2]; offset2++; break; case 3: sc3 = Abox_Mat[GAP_ROW][j+offset1+offset2]; offset2++; sc3 += Abox_Mat[GAP_ROW][j+offset1+offset2]; offset2++; break; } for (; (j+offset1+offset2) < ABOX_LEN; j++) { sc3+= Abox_Mat[(int)(iseq[i+j])][j+offset1+offset2]; } abox_end = i+ABOX_LEN-offset1-offset2-1; abdistSc = Get_ABdist_weight(tRNA->Bbox_st-abox_end-1); if ((sc1 + sc2 + sc3 + abdistSc) > (tRNA->AboxSc + tRNA->ABdistSc)) { tRNA->Abox_st = i; tRNA->Abox_end = abox_end; tRNA->ABdistSc = abdistSc; tRNA->AboxSc = sc1+sc2+sc3; best_offset1= offset1; best_gap = gapct; if (verbose) if (strand == 0) { printf("Abox at %d (St=%d) A:%.2f AB(%d):%.2f I:%.2f\n", i,i-5,tRNA->AboxSc, tRNA->Bbox_st-abox_end-1,tRNA->ABdistSc, tRNA->AboxSc+tRNA->BboxSc+tRNA->ABdistSc); } else { printf("Abox at %d (St=%d) A:%.2f AB(%d):%.2f I:%.2f\n", seqlen-i+1,seqlen-(i-5)+1,tRNA->AboxSc, tRNA->Bbox_st-abox_end-1,tRNA->ABdistSc, tRNA->AboxSc+tRNA->BboxSc+tRNA->ABdistSc); } } } /* for gapct, enumerating all possible gaps */ } /* for i, starting pos for A box */ } int GetBestTrxTerm (TRNA_TYPE *tRNA, char *seq, int seqlen, float TermPenalty) { int i, /* current seq position */ startidx, endidx; /* start & end points for term search */ int ct, BTermdist; float score; /* current score */ startidx = tRNA->Bbox_end+MIN_BTERM_DIST-1; endidx = MIN(startidx+MAX_TERM_SEARCH,(seqlen-4)); for (i=startidx; iBbox_end-1; for (ct=0; BTermDistIdx_Mat[ct] < BTermdist; ct++) { } tRNA->TermSc = BTermDistSc_Mat[ct]; tRNA->Term_st = i; return 1; } } tRNA->Term_st = -1; if (endidx == (seqlen-4)) { tRNA->TermSc = TOT_SCORE_THRESH - (INT_SCORE_THRESH); return 1; } else { tRNA->TermSc = MAX_PENALTY; return 0; } } /* Uses tranlation scheme & AA lookup table from Squid library */ void Get_IsoType (TRNA_TYPE *tRNA) { int i, codon; char codon_seq[4]; revcomp(codon_seq,tRNA->acodon); codon = 0; for (i = 0; i < 3; i++) { codon *= 4; switch (codon_seq[i]) { case 'A': case 'a': break; case 'C': case 'c': codon += 1; break; case 'G': case 'g': codon += 2; break; case 'T': case 't': codon += 3; break; case 'U': case 'u': codon += 3; break; default: codon = 64; break; } if (codon == 64) break; } strcpy(tRNA->iso_type,stdcode3[codon]); } void Get_anticodon (TRNA_TYPE *tRNA, char *seq) { char *acodonp; int startidx, i, besti, score, bestsc; startidx = tRNA->Abox_end + 7; acodonp = seq + startidx; bestsc = besti = 0; for (i=0; i<7; i++) { score = 0; if ((acodonp[i-2] == 'C') || (acodonp[i-2] == 'T')) score++; if (acodonp[i-1] == 'T') score++; if ((acodonp[i+3] == 'A') || (acodonp[i+3] == 'G')) score++; if (score > bestsc) { bestsc = score; besti = i; } } strncpy(tRNA->acodon,acodonp+besti,3); /* tRNA->acodon[3]='\0'; */ tRNA->acodon_idx = startidx + besti; } void Get_tRNA_stats (TRNA_TYPE *tRNA, char *seq, int seqlen, int strand) { tRNA->start = MAX(1,(tRNA->Abox_st - 5)); tRNA->end = MIN((tRNA->Bbox_end + 12),seqlen); if (strand == -1) { tRNA->start = seqlen - tRNA->start + 1; tRNA->end = seqlen - tRNA->end + 1; } if (!strncmp("SeC",tRNA->iso_type,3)) { strcpy(tRNA->acodon,"TCA"); tRNA->Bbox_end++; } else { Get_anticodon(tRNA,seq); Get_IsoType(tRNA); } } void Save_tRNA (TRNA_TYPE *tRNA, SQINFO *sqinfo, char *seq, int strand, int ShowScores, long int sqoffset) { if (ShowScores) printf("%s.%d\t%ld\t%ld\t%s\t%d\tA:%.2f B:%.2f AB:%.2f T:%.2f Tot:%.2f\n", sqinfo->name,tRNA->idno,tRNA->start+sqoffset,tRNA->end+sqoffset, tRNA->acodon,strand, tRNA->AboxSc,tRNA->BboxSc,tRNA->ABdistSc, tRNA->TermSc,tRNA->totSc); else printf("%-10s\t%d\t%ld\t%ld\t%s\t%s\t0\t0\t%.2f\n", sqinfo->name,tRNA->idno,tRNA->start+sqoffset,tRNA->end+sqoffset, tRNA->iso_type,tRNA->acodon,tRNA->totSc); } int tRNAOverlap (TRNA_TYPE *tRNA1, TRNA_TYPE *tRNA2, int strand) { if (strand == 0) { if ((((tRNA1->start >= tRNA2->start) && (tRNA1->start < tRNA2->end-MAX_OVLAP)) || ((tRNA1->end > tRNA2->start+MAX_OVLAP) && (tRNA1->end <= tRNA2->end))) || (((tRNA2->start >= tRNA1->start) && (tRNA2->start < tRNA1->end-MAX_OVLAP)) || ((tRNA2->end > tRNA1->start+MAX_OVLAP) && (tRNA2->end <= tRNA1->end)))) return 1; else return 0; } else { if ((((tRNA1->start <= tRNA2->start) && (tRNA1->start > tRNA2->end+MAX_OVLAP)) || ((tRNA1->end < tRNA2->start-MAX_OVLAP) && (tRNA1->end >= tRNA2->end))) || (((tRNA2->start <= tRNA1->start) && (tRNA2->start > tRNA1->end+MAX_OVLAP)) || ((tRNA2->end < tRNA1->start-MAX_OVLAP) && (tRNA2->end >= tRNA1->end)))) return 1; else return 0; } } tRNAscan-SE-2.0/src/modelmaking.c0000644000543100007160000004104211021467304016053 0ustar pchanlowelab/* modelmaking.c * Tue Oct 4 15:33:21 1994 * * Bring together common elements of the model construction process. * Also, provides EasyModelmaker() for making a model given a structure. * * All model makers have in common that they construct a "master" traceback * for the alignment, specifying which columns are match vs. insert and * how the model tree branches. This traceback is assigned a numbering * system by NumberMasterTrace(), which returns the number of nodes; * the caller then allocates a new CM. This new model is numbered (assigned * a branching structure) by TopofyNewCM(). Then individual tracebacks * are constructed from individual aligned sequences by Transmogrify(). * The individual tracebacks are counted into a new model with TraceCount() * and the counts converted to probabilities with ProbifyCM(). * * The master tree is a (slightly misused) trace_s structure with the following * properties: * insert columns are not represented at all. Transmogrify() must deal. * * emitl, emitr == 0..alen-1 coords of assigned columns. Set and valid for all * nodes, even non-emitters. END values will be * on the off-diagonal, emitl = emitr+1. (If this is * not true, Transmogrify() breaks.) The trace * construction function is responsible for this. * * nodeidx == this is numbered by preorder traversal by NumberMasterTrace(), * which also numbers a model. ENDs are not explicitly * represented in a CM, so they get nodeidx = -1. * * type == a number 0..6 for *node* type. (Usually this is a unique * state type identifier.) ENDs are -1. The trace construction * function is reponsible for this. */ #include #include #include "version.h" #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: NumberMasterTrace() * * Purpose: Given a master trace for an alignment, number the trace tree * (in the nodeidx field) in preorder traversal. END nodes * will not be represented explicitly in the final CM. They * get numbered -1. */ void NumberMasterTrace(struct trace_s *mtr, int *ret_nodes) { struct trace_s *curr; struct tracestack_s *dolist; int nodes = 0; dolist = InitTracestack(); PushTracestack(dolist, mtr->nxtl); /* push root onto stack */ while ((curr = PopTracestack(dolist)) != NULL) { if (curr->nxtl == NULL) /* END node */ curr->nodeidx = -1; else /* other nodes */ curr->nodeidx = nodes++; if (curr->nxtr != NULL) PushTracestack(dolist, curr->nxtr); if (curr->nxtl != NULL) PushTracestack(dolist, curr->nxtl); } FreeTracestack(dolist); *ret_nodes = nodes; } /* Function: TopofyNewCM() * * Purpose: Given the mtr master traceback tree, which defines the * topology of the model, write the nxt and nxt2 connections * into the model. For the most part, these are already * contained in mtr thanks to NumberMasterTrace(); the * only tricky bit is converting END states from multiple * real states (in mtr) to -1 nxt flags in the cm. * * Return: 1 on success, 0 on failure. */ void TopofyNewCM(struct cm_s *cm, struct trace_s *mtr) { struct tracestack_s *dolist; struct trace_s *curr; dolist = InitTracestack(); PushTracestack(dolist, mtr->nxtl); /* push ROOT onto stack */ while ((curr = PopTracestack(dolist)) != NULL) { if (curr->nxtl == NULL) continue; /* ignore ENDs */ if (curr->nxtr != NULL) /* deal with BIFURC states */ { cm->nd[curr->nodeidx].nxt2 = curr->nxtr->nodeidx; PushTracestack(dolist, curr->nxtr); } else cm->nd[curr->nodeidx].nxt2 = -1; /* watch out for curr pointing to END states. */ cm->nd[curr->nodeidx].type = curr->type; cm->nd[curr->nodeidx].nxt = (curr->nxtl->nxtl == NULL) ? -1 : curr->nxtl->nodeidx; PushTracestack(dolist, curr->nxtl); } FreeTracestack(dolist); } /* Function: Transmogrify() * * Purpose: Given a master consensus traceback, create an individual * "fake" traceback. The fake traceback contains inserts * and converts the type field of mtr (which contains NODE * type indices) into _ST type indices, including proper * classification of nodes into DEL_ST or the various match * states depending on what aseq[idx] looks like. * * Args: mtr - master consensus traceback tree * aseq - 0..alen-1 aligned sequence. * ret_tr - RETURN: individual traceback * ret_pool - RETURN: memory pool for traceback * * Return: (void). *ret_tr must be free'd by the caller */ void Transmogrify(struct trace_s *mtr, char *aseq, struct trace_s **ret_tr, struct trmem_s **ret_pool) { struct trace_s *tr; struct trmem_s *pool; struct tracestack_s *mtr_stack; struct tracestack_s *tr_stack; struct trace_s *curr_mtr; struct trace_s *curr_tr; int i2,j2; mtr_stack = InitTracestack(); tr_stack = InitTracestack(); InitTrace(&tr, &pool); /* Push ROOT onto both stacks */ PushTracestack(mtr_stack, mtr->nxtl); PushTracestack(tr_stack, AttachTrace(tr, pool, -1, -1, 0, uBEGIN_ST)); while ((curr_mtr = PopTracestack(mtr_stack)) != NULL) { curr_tr = PopTracestack(tr_stack); switch (curr_mtr->type) { case uEND_ST: DeleteTracenode(curr_tr, pool); break; case MATP_NODE: if (isgap(aseq[curr_mtr->emitl])) { if (isgap(aseq[curr_mtr->emitr])) curr_tr->type = uDEL_ST; else curr_tr->type = uMATR_ST; } else { if (isgap(aseq[curr_mtr->emitr])) curr_tr->type = uMATL_ST; else curr_tr->type = uMATP_ST; } /* May have to deal with INSL and INSR; INSL precedes INSR */ for (i2 = curr_mtr->emitl+1; i2 < curr_mtr->nxtl->emitl; i2++) if (!isgap(aseq[i2])) curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); /* May have to deal with INSR */ for (j2 = curr_mtr->emitr-1; j2 > curr_mtr->nxtl->emitr; j2--) if (! isgap(aseq[j2])) curr_tr = AttachTrace(curr_tr, pool, curr_mtr->nxtl->emitl, j2, curr_mtr->nodeidx, uINSR_ST); break; case MATL_NODE: if (isgap(aseq[curr_mtr->emitl])) curr_tr->type = uDEL_ST; else curr_tr->type = uMATL_ST; /* May have to deal with INSL */ for (i2 = curr_mtr->emitl+1; i2 < curr_mtr->nxtl->emitl; i2++) if (!isgap(aseq[i2])) curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); break; case MATR_NODE: if (isgap(aseq[curr_mtr->emitr])) curr_tr->type = uDEL_ST; else curr_tr->type = uMATR_ST; /* May have to deal with INSR */ for (j2 = curr_mtr->emitr-1; j2 > curr_mtr->nxtl->emitr; j2--) if (! isgap(aseq[j2])) curr_tr = AttachTrace(curr_tr, pool, curr_mtr->nxtl->emitl, j2, curr_mtr->nodeidx, uINSR_ST); break; case BIFURC_NODE: curr_tr->type = uBIFURC_ST; break; case BEGINL_NODE: curr_tr->type = uBEGIN_ST; break; case BEGINR_NODE: curr_tr->type = uBEGIN_ST; /* May have to deal with INSL. * Inserts from BEGINR are *inclusive* of i */ for (i2 = curr_mtr->emitl; i2 < curr_mtr->nxtl->emitl; i2++) if (!isgap(aseq[i2])) curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); break; case ROOT_NODE: curr_tr->type = uBEGIN_ST; /* May have to deal with INSL and INSR; note INSL precedes INSR * inserts from root are inclusive of i */ for (i2 = curr_mtr->emitl; i2 < curr_mtr->nxtl->emitl; i2++) if (!isgap(aseq[i2])) curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); /* May have to deal with INSR */ for (j2 = curr_mtr->emitr; j2 > curr_mtr->nxtl->emitr; j2--) if (! isgap(aseq[j2])) curr_tr = AttachTrace(curr_tr, pool, curr_mtr->nxtl->emitl, j2, curr_mtr->nodeidx, uINSR_ST); break; default: Die("Invalid node type %d", curr_mtr->type); } /* Push the children onto stacks, if they're not END nodes */ if (curr_mtr->nxtr != NULL) { PushTracestack(mtr_stack, curr_mtr->nxtr); PushTracestack(tr_stack, AttachTrace(curr_tr, pool, curr_mtr->nxtr->emitl, curr_mtr->nxtr->emitr, curr_mtr->nxtr->nodeidx, curr_mtr->nxtr->type)); } if (curr_mtr->nxtl != NULL) { PushTracestack(mtr_stack, curr_mtr->nxtl); PushTracestack(tr_stack, AttachTrace(curr_tr, pool, curr_mtr->nxtl->emitl, curr_mtr->nxtl->emitr, curr_mtr->nxtl->nodeidx, curr_mtr->nxtl->type)); } } FreeTracestack(mtr_stack); FreeTracestack(tr_stack); *ret_pool = pool; *ret_tr = tr; } /* Function: EasyModelmaker() * * Purpose: The customer always knows best. * * Construct a model given a stated structure. The structure * is provided via a "cs" (consensus sequence) line, as would * occur in an annotated SELEX file. Only > and < characters * in this line are interpreted (as base pairs). * * Match vs. insert can be determined one of two ways. By default, * the assignment is made by "gapthresh"; for columns with * fractional occurence of gaps greater than this, the column * is assigned to insert. If "use_rf" is TRUE, the rf (reference) * line is interpreted as the assignment -- columns with non-space * characters in the rf line are assigned to MATCH. * * Both rf and cs are provided in the ainfo structure. * * Args: aseq - aligned sequences. [0..nseq-1] by [0..alen-1] * ainfo - info about the alignment, including alen, cs, * and rf * nseq - number of seqs in aseq * prior - prior distributions for CM construction * gapthresh - over this fraction of gaps, assign column as INS * use_rf - if TRUE, use rf field of ainfo for MAT/INS assignment * ret_cm - RETURN: new model (maybe NULL) * ret_mtr - RETURN: master traceback for alignment (maybe NULL) * * Return: void * cm is allocated here. FreeCM(*ret_cm). * tr is allocated here. FreeTrace() on each one, then free(*ret_tr). */ void EasyModelmaker(char **aseq, AINFO *ainfo, int nseq, struct prior_s *prior, double gapthresh, int use_rf, struct cm_s **ret_cm, struct trace_s **ret_mtr) { struct cm_s *cm; /* new covariance model */ struct trace_s *mtr; /* master traceback tree for alignment */ struct trace_s *tr; /* individual sequence traceback tree */ struct trmem_s *pool; /* memory pool for traceback tree */ struct tracestack_s *dolist; struct trace_s *cur; int *matassign; int nodes; int idx, apos; int *ct; int i,j, nxti, nxtj; if (! (ainfo->flags & AINFO_CS)) Die("No cs (consensus structure) line available for that alignment."); /* Determine match/insert assignments * matassign is 0..alen-1. Values are 1 if MAT, 0 if INS. */ matassign = (int *) MallocOrDie(sizeof(int) * ainfo->alen); if (use_rf) { if (! (ainfo->flags & AINFO_RF)) Die("No rf (reference coord) line available for that alignment."); for (apos = 0; apos < ainfo->alen; apos++) matassign[apos] = (ainfo->rf[apos] == ' ') ? 0 : 1; } else { int gaps; for (apos = 0; apos < ainfo->alen; apos++) { for (gaps = 0, idx = 0; idx < nseq; idx++) if (isgap(aseq[idx][apos])) gaps++; matassign[apos] = ((double) gaps / (double) nseq > gapthresh) ? 0 : 1; } } /* Determine a "ct" array, base-pairing partners for each position */ if (! KHS2ct(ainfo->cs, ainfo->alen, FALSE, &ct)) Die("Consensus structure string is inconsistent"); /* Make sure the consensus structure "ct" is consistent with the match assignments. * Wipe out all structure under INS; including the base-paired * partner of INS-assigned positions */ for (apos = 0; apos < ainfo->alen; apos++) if (! matassign[apos]) { if (ct[apos] != -1) ct[ct[apos]] = -1; ct[apos] = -1; } /* Construct a master traceback tree. * This code is borrowed from yarn's KHS2Trace(). * mtr's emitl, emitr, and type are properly set by this section. */ InitTrace(&mtr, NULL); dolist = InitTracestack(); cur = AttachTrace(mtr, NULL, 0, ainfo->alen-1, -1, ROOT_NODE); /* attach the root */ PushTracestack(dolist, cur); while ((cur = PopTracestack(dolist)) != NULL) { i = cur->emitl; j = cur->emitr; /* This node accounts for i..j, but we don't know how yet. * Six possibilities: * i > j; this is an END state; do nothing. * this is already assigned as a BEGIN; push i,j * i is unpaired; this is a MATL state; push i+1, j * j is unpaired; this is a MATR state; push i,j-1 * i,j pair to each other; this is a MATP state; push i+1,j-1 * i,j pair but not to each other; this is a BIFURC state; * pick mid ip <= mid < jp; push BEGIN i,mid and working i,mid, * and push BEGIN mid+1,j and working mid+1,j */ if (i > j) cur->type = uEND_ST; else if (cur->type == ROOT_NODE) { /* try to push i,j; but deal with INSL and INSR */ for (nxti = i; nxti <= j; nxti++) if (matassign[nxti]) break; for (nxtj = j; nxtj >= nxti; nxtj--) if (matassign[nxtj]) break; if (nxti <= nxtj) PushTracestack(dolist, AttachTrace(cur, NULL, nxti, nxtj, -1, uEND_ST)); else { cur->nxtl->emitl = nxti; cur->nxtl->emitr = nxtj; } /* deal with END_ST */ } else if (cur->type == BEGINL_NODE) /* no inserts */ { if (i <= j) PushTracestack(dolist, AttachTrace(cur, NULL, i, j, -1, uEND_ST)); else { cur->nxtl->emitl = nxti; cur->nxtl->emitr = j; } } else if (cur->type == BEGINR_NODE) /* INSL */ { for (nxti = i; nxti <= j; nxti++) if (matassign[nxti]) break; if (nxti <= j) PushTracestack(dolist, AttachTrace(cur, NULL, nxti, j, -1, uEND_ST)); else { cur->nxtl->emitl = nxti; cur->nxtl->emitr = j; } /* deal with END_ST */ } else if (ct[i] == -1) /* i unpaired. This is a MATL node; allow INSL */ { cur->type = MATL_NODE; for (nxti = i+1; nxti <= j; nxti++) if (matassign[nxti]) break; if (nxti <= j) PushTracestack(dolist, AttachTrace(cur, NULL, nxti, j, -1, uEND_ST)); else { cur->nxtl->emitl = nxti; cur->nxtl->emitr = j; } /* deal with END_ST */ } else if (ct[j] == -1) /* j unpaired. MATR node. Deal with INSR */ { cur->type = MATR_NODE; for (nxtj = j-1; nxtj >= i; nxtj--) if (matassign[nxtj]) break; if (i <= nxtj) PushTracestack(dolist, AttachTrace(cur, NULL, i, nxtj, -1, uEND_ST)); else { cur->nxtl->emitl = i; cur->nxtl->emitr = nxtj; } /* deal with END_ST */ } else if (ct[i] == j) /* i,j paired to each other. MATP. deal with INSL, INSR */ { cur->type = MATP_NODE; for (nxti = i+1; nxti <= j; nxti++) if (matassign[nxti]) break; for (nxtj = j-1; nxtj >= nxti; nxtj--) if (matassign[nxtj]) break; if (nxti <= nxtj) PushTracestack(dolist, AttachTrace(cur, NULL, nxti, nxtj, -1, uEND_ST)); else { cur->nxtl->emitl = nxti; cur->nxtl->emitr = nxtj; } /* deal with END_ST */ } else /* i,j paired but not to each other. BIFURC. no INS. */ { /* by convention, right side of bifurc deals with insert in middle */ cur->type = BIFURC_NODE; PushTracestack(dolist, AttachTrace(cur, NULL, ct[i]+1, j, -1, BEGINR_NODE)); PushTracestack(dolist, AttachTrace(cur, NULL, i, ct[i], -1, BEGINL_NODE)); } } /* while something's on dolist stack */ FreeTracestack(dolist); free(ct); /* Now, do the drill for constructing a model using this master trace. */ NumberMasterTrace(mtr, &nodes); if ((cm = AllocCM(nodes)) == NULL) Die("failed to allocate for new model of %d nodes\n", nodes); TopofyNewCM(cm, mtr); for (idx = 0; idx < nseq; idx++) { Transmogrify(mtr, aseq[idx], &tr, &pool); if (! TraceCount(cm, aseq[idx], (ainfo->sqinfo[idx].flags & SQINFO_WGT) ? (double) ainfo->sqinfo[idx].weight : 1.0, tr)) Die("TraceCount() failed"); FreeTrace(tr, pool); } ProbifyCM(cm, prior); free(matassign); if (ret_cm != NULL) *ret_cm = cm; else FreeCM(cm); if (ret_mtr != NULL) *ret_mtr = mtr; else FreeTrace(mtr, NULL); } tRNAscan-SE-2.0/src/sqio.c0000644000543100007160000013242611672026406014554 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* File: sqio.c * From: ureadseq.c in Don Gilbert's sequence i/o package * * Reads and writes nucleic/protein sequence in various * formats. Data files may have multiple sequences. * * Heavily modified from READSEQ package * Copyright (C) 1990 by D.G. Gilbert * Biology Dept., Indiana University, Bloomington, IN 47405 * email: gilbertd@bio.indiana.edu * Thanks Don! * * SRE: Modifications as noted. Fri Jul 3 09:44:54 1992 * Packaged for squid, Thu Oct 1 10:07:11 1992 * ANSI conversion in full swing, Mon Jul 12 12:22:21 1993 */ #include #include #include #include #ifndef SEEK_SET #include /* may Sun Microsystems rot in hell */ #endif #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Our hack for "sequential" access of sequences in * interleaved-format alignment files (MSF, SELEX): * static pointers at data for the entire alignment. */ static char **ali_aseqs; static char **ali_rseqs; static struct aliinfo_s ali_ainfo; static int ali_num; static int curridx; #define kStartLength 500 static char *aminos = "ABCDEFGHIKLMNPQRSTVWXYZ*"; static char *primenuc = "ACGTUN"; static char *protonly = "EFIPQZ"; /* static char stdsymbols[6] = "_.-*?"; */ static char allsymbols[32] = "_.-*?<>{}[]()!@#$%^&=+;:'|`~\"\\"; static char *seqsymbols = allsymbols; /* use general form of isseqchar -- all chars + symbols. no formats except nbrf (?) use symbols in data area as anything other than sequence chars. (wrong. PIR-CODATA does. Remove /) */ void FreeSequence(char *seq, SQINFO *sqinfo) { if (seq != NULL) free(seq); if (sqinfo->flags & SQINFO_SS) free(sqinfo->ss); if (sqinfo->flags & SQINFO_SA) free(sqinfo->sa); } int SetSeqinfoString(SQINFO *sqinfo, char *sptr, int flag) { int len; int pos; while (*sptr == ' ') sptr++; /* ignore leading whitespace */ for (pos = strlen(sptr)-1; pos >= 0; pos--) if (! isspace(sptr[pos])) break; sptr[pos+1] = '\0'; /* ignore trailing whitespace */ switch (flag) { case SQINFO_NAME: if (*sptr != '-') { strncpy(sqinfo->name, sptr, SQINFO_NAMELEN-1); sqinfo->name[SQINFO_NAMELEN-1] = '\0'; sqinfo->flags |= SQINFO_NAME; } break; case SQINFO_ID: if (*sptr != '-') { strncpy(sqinfo->id, sptr, SQINFO_NAMELEN-1); sqinfo->id[SQINFO_NAMELEN-1] = '\0'; sqinfo->flags |= SQINFO_ID; } break; case SQINFO_ACC: if (*sptr != '-') { strncpy(sqinfo->acc, sptr, SQINFO_NAMELEN-1); sqinfo->acc[SQINFO_NAMELEN-1] = '\0'; sqinfo->flags |= SQINFO_ACC; } break; case SQINFO_DESC: if (*sptr != '-') { if (sqinfo->flags & SQINFO_DESC) /* append? */ { len = strlen(sqinfo->desc); if (len < SQINFO_DESCLEN-2) /* is there room? */ { strncat(sqinfo->desc, " ", SQINFO_DESCLEN-1-len); len++; strncat(sqinfo->desc, sptr, SQINFO_DESCLEN-1-len); } } else /* else copy */ strncpy(sqinfo->desc, sptr, SQINFO_DESCLEN-1); sqinfo->desc[SQINFO_DESCLEN-1] = '\0'; sqinfo->flags |= SQINFO_DESC; } break; case SQINFO_START: if (!IsInt(sptr)) { squid_errno = SQERR_FORMAT; return 0; } sqinfo->start = atoi(sptr); if (sqinfo->start != 0) sqinfo->flags |= SQINFO_START; break; case SQINFO_STOP: if (!IsInt(sptr)) { squid_errno = SQERR_FORMAT; return 0; } sqinfo->stop = atoi(sptr); if (sqinfo->stop != 0) sqinfo->flags |= SQINFO_STOP; break; case SQINFO_OLEN: if (!IsInt(sptr)) { squid_errno = SQERR_FORMAT; return 0; } sqinfo->olen = atoi(sptr); if (sqinfo->olen != 0) sqinfo->flags |= SQINFO_OLEN; break; case SQINFO_WGT: if (*sptr != '-') { if (!IsReal(sptr)) { squid_errno = SQERR_FORMAT; return 0; } sqinfo->weight = (float) atof(sptr); sqinfo->flags |= SQINFO_WGT; } break; default: Die("Invalid flag %d to SetSeqinfoString()"); } return 1; } void SeqinfoCopy(SQINFO *sq1, SQINFO *sq2) { sq1->flags = sq2->flags; if (sq2->flags & SQINFO_NAME) strcpy(sq1->name, sq2->name); if (sq2->flags & SQINFO_ID) strcpy(sq1->id, sq2->id); if (sq2->flags & SQINFO_ACC) strcpy(sq1->acc, sq2->acc); if (sq2->flags & SQINFO_DESC) strcpy(sq1->desc, sq2->desc); if (sq2->flags & SQINFO_LEN) sq1->len = sq2->len; if (sq2->flags & SQINFO_START) sq1->start = sq2->start; if (sq2->flags & SQINFO_STOP) sq1->stop = sq2->stop; if (sq2->flags & SQINFO_OLEN) sq1->olen = sq2->olen; if (sq2->flags & SQINFO_TYPE) sq1->type = sq2->type; if (sq2->flags & SQINFO_WGT) sq1->weight = sq2->weight; if (sq2->flags & SQINFO_SS) sq1->ss = Strdup(sq2->ss); if (sq2->flags & SQINFO_SA) sq1->sa = Strdup(sq2->sa); } /* Function: ToDNA() * * Purpose: Convert a sequence to DNA. * U --> T */ void ToDNA(char *seq) { for (; *seq != '\0'; seq++) { if (*seq == 'U') *seq = 'T'; else if (*seq == 'u') *seq = 't'; } } /* Function: ToRNA() * * Purpose: Convert a sequence to RNA. * T --> U */ void ToRNA(char *seq) { for (; *seq != '\0'; seq++) { if (*seq == 'T') *seq = 'U'; else if (*seq == 't') *seq = 'u'; } } static int isSeqChar(int c) { if (c > 127) return 0; /* IRIX 4.0 bug! isascii(255) returns TRUE */ return (isalpha(c) || strchr(seqsymbols,c)); } static void readline(FILE *f, char *s) { char *cp; if (NULL == fgets(s, LINEBUFLEN, f)) *s = 0; else { cp = strchr(s, '\n'); if (cp != NULL) *cp = 0; } } static void GetLine(struct ReadSeqVars *V) { readline(V->f, V->sbuffer); } /* Function: addseq() * * Purpose: Add a line of sequence to the growing string in V. */ static void addseq(char *s, struct ReadSeqVars *V) { char *ptr; while (*s != 0) { if (isSeqChar((int) *s)) { if (*s == '-' && V->dash_equals_n) *s = 'N'; if (V->seqlen >= V->maxseq) { V->maxseq += kStartLength; ptr = (char*) realloc(V->seq, V->maxseq+1); if (ptr==NULL) { squid_errno = SQERR_MEM; return; } else V->seq = ptr; } V->seq[(V->seqlen)++] = *s; } s++; } } static void addstruc(char *s, struct ReadSeqVars *V) { char *sptr; if (! (V->sqinfo->flags & SQINFO_SS)) { if ((V->sqinfo->ss = (char *) malloc ((V->maxseq+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return; } V->sqinfo->flags |= SQINFO_SS; sptr = V->sqinfo->ss; } else { if ((V->sqinfo->ss = (char *) realloc(V->sqinfo->ss, V->maxseq+1)) == NULL) { squid_errno = SQERR_MEM; return; } sptr = V->sqinfo->ss; while (*sptr != '\0') sptr++; } while (*s != 0) { if (isSeqChar((int)*s)) { *sptr = *s; sptr++; } s++; } *sptr = '\0'; } static void readLoop(int addfirst, int (*endTest)(char *,int *), struct ReadSeqVars *V) { int addend = 0; int done = 0; V->seqlen = 0; if (addfirst) addseq(V->sbuffer, V); do { GetLine(V); done = feof(V->f); done |= (*endTest)(V->sbuffer, &addend); if (addend || !done) addseq(V->sbuffer, V); } while (!done); } static int endPIR(char *s, int *addend) { *addend = 0; if ((strncmp(s, "///", 3) == 0) || (strncmp(s, "ENTRY", 5) == 0)) return 1; else return 0; } static void readPIR(struct ReadSeqVars *V) { char *sptr; /* load first line of entry */ while (!feof(V->f) && strncmp(V->sbuffer, "ENTRY", 5) != 0) GetLine(V); if (feof(V->f)) return; if ((sptr = strtok(V->sbuffer + 15, "\n\t ")) != NULL) { SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); SetSeqinfoString(V->sqinfo, sptr, SQINFO_ID); } do { GetLine(V); if (!feof(V->f) && strncmp(V->sbuffer, "TITLE", 5) == 0) SetSeqinfoString(V->sqinfo, V->sbuffer+15, SQINFO_DESC); else if (!feof(V->f) && strncmp(V->sbuffer, "ACCESSION", 9) == 0) { if ((sptr = strtok(V->sbuffer+15, " \t\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_ACC); } } while (! feof(V->f) && (strncmp(V->sbuffer,"SEQUENCE", 8) != 0)); GetLine(V); /* skip next line, coords */ readLoop(0, endPIR, V); /* reading a real PIR-CODATA database file, we keep the source coords */ V->sqinfo->start = 1; V->sqinfo->stop = V->seqlen; V->sqinfo->olen = V->seqlen; V->sqinfo->flags |= SQINFO_START | SQINFO_STOP | SQINFO_OLEN; /* get next line */ while (!feof(V->f) && strncmp(V->sbuffer, "ENTRY", 5) != 0) GetLine(V); } static int endIG(char *s, int *addend) { *addend = 1; /* 1 or 2 occur in line w/ bases */ return((strchr(s,'1')!=NULL) || (strchr(s,'2')!=NULL)); } static void readIG(struct ReadSeqVars *V) { char *nm; /* position past ';' comments */ do { GetLine(V); } while (! (feof(V->f) || ((*V->sbuffer != 0) && (*V->sbuffer != ';')) )); if (!feof(V->f)) { if ((nm = strtok(V->sbuffer, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, nm, SQINFO_NAME); readLoop(0, endIG, V); } while (!(feof(V->f) || ((*V->sbuffer != '\0') && (*V->sbuffer == ';')))) GetLine(V); } static int endStrider(char *s, int *addend) { *addend = 0; return (strstr( s, "//") != NULL); } static void readStrider(struct ReadSeqVars *V) { char *nm; while ((!feof(V->f)) && (*V->sbuffer == ';')) { if (strncmp(V->sbuffer,"; DNA sequence", 14) == 0) { if ((nm = strtok(V->sbuffer+16, ",\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, nm, SQINFO_NAME); } GetLine(V); } if (! feof(V->f)) readLoop(1, endStrider, V); /* load next line */ while ((!feof(V->f)) && (*V->sbuffer != ';')) GetLine(V); } static int endGB(char *s, int *addend) { *addend = 0; return ((strstr(s,"//") != NULL) || (strstr(s,"LOCUS") == s)); } static void readGenBank(struct ReadSeqVars *V) { char *sptr; int in_definition; while (strncmp(V->sbuffer, "LOCUS", 5) != 0) GetLine(V); if ((sptr = strtok(V->sbuffer+12, "\n\t ")) != NULL) { SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); SetSeqinfoString(V->sqinfo, sptr, SQINFO_ID); } in_definition = FALSE; while (! feof(V->f)) { GetLine(V); if (! feof(V->f) && strstr(V->sbuffer, "DEFINITION") == V->sbuffer) { if ((sptr = strtok(V->sbuffer+12, "\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_DESC); in_definition = TRUE; } else if (! feof(V->f) && strstr(V->sbuffer, "ACCESSION") == V->sbuffer) { if ((sptr = strtok(V->sbuffer+12, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_ACC); in_definition = FALSE; } else if (strncmp(V->sbuffer,"ORIGIN", 6) != 0) { if (in_definition) SetSeqinfoString(V->sqinfo, V->sbuffer, SQINFO_DESC); } else break; } readLoop(0, endGB, V); /* reading a real GenBank database file, we keep the source coords */ V->sqinfo->start = 1; V->sqinfo->stop = V->seqlen; V->sqinfo->olen = V->seqlen; V->sqinfo->flags |= SQINFO_START | SQINFO_STOP | SQINFO_OLEN; while (!(feof(V->f) || ((*V->sbuffer!=0) && (strstr(V->sbuffer,"LOCUS") == V->sbuffer)))) GetLine(V); /* SRE: V->s now holds "//", so sequential reads are wedged: fixed Tue Jul 13 1993 */ while (!feof(V->f) && strstr(V->sbuffer, "LOCUS ") != V->sbuffer) GetLine(V); } static int endNBRF(char *s, int *addend) { char *a; if ((a = strchr(s, '*')) != NULL) { /* end of 1st seq */ /* "*" can be valid base symbol, drop it here */ *a = 0; *addend = 1; return(1); } else if (*s == '>') { /* start of next seq */ *addend = 0; return(1); } else return(0); } static void readNBRF(struct ReadSeqVars *V) { char *sptr; if ((sptr = strtok(V->sbuffer+4, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); GetLine(V); /*skip title-junk line*/ readLoop(0, endNBRF, V); while (!(feof(V->f) || (*V->sbuffer != 0 && *V->sbuffer == '>'))) GetLine(V); } static int endGCGdata(char *s, int *addend) { *addend = 0; return (*s == '>'); } static void readGCGdata(struct ReadSeqVars *V) { char *sptr, *lptr; int binary = FALSE; /* whether data are binary or not */ int blen; /* length of binary sequence */ /* first line contains ">>>>" followed by name */ if (Strparse(">>>>([^ ]+) .+2BIT +Len: ([0-9]+)", V->sbuffer, NULL, 2, &sptr, &lptr) == 0) { binary = TRUE; SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); blen = atoi(lptr); free(sptr); free(lptr); } else if (Strparse(">>>>([^ ]+) .+ASCII +Len: [0-9]+", V->sbuffer, NULL, 1, &sptr) == 0) { SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); free(sptr); } else Die("bogus GCGdata format? %s", V->sbuffer); /* second line contains free text description */ GetLine(V); SetSeqinfoString(V->sqinfo, V->sbuffer, SQINFO_DESC); if (binary) { /* allocate for blen characters +3... (allow for 3 bytes of slop) */ if (blen >= V->maxseq) { V->maxseq = blen; if ((V->seq = (char *) realloc (V->seq, sizeof(char)*(V->maxseq+4)))==NULL) Die("malloc failed"); } /* read (blen+3)/4 bytes from file */ if (fread(V->seq, sizeof(char), (blen+3)/4, V->f) < ((blen+3)/4)) Die("fread failed"); V->seqlen = blen; /* convert binary code to seq */ GCGBinaryToSequence(V->seq, blen); } else readLoop(0, endGCGdata, V); while (!(feof(V->f) || ((*V->sbuffer != 0) && (*V->sbuffer == '>')))) GetLine(V); } static int endPearson(char *s, int *addend) { *addend = 0; return(*s == '>'); } static void readPearson(struct ReadSeqVars *V) { char *sptr; /* check for my special FASTA format */ if (strstr(V->sbuffer, "..") != NULL && strstr(V->sbuffer, "::") != NULL) { if ((sptr = strtok(V->sbuffer+1, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); if ((sptr = strtok(NULL, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_WGT); if ((sptr = strtok(NULL, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_ID); if ((sptr = strtok(NULL, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_ACC); if ((sptr = strtok(NULL, ".")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_START); if ((sptr = strtok(NULL, ".:")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_STOP); if ((sptr = strtok(NULL, ":\t\n ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_OLEN); if ((sptr = strtok(NULL, "\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_DESC); } else /* else we're normal FASTA format */ { if ((sptr = strtok(V->sbuffer+1, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); if ((sptr = strtok(NULL, "\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_DESC); } readLoop(0, endPearson, V); while (!(feof(V->f) || ((*V->sbuffer != 0) && (*V->sbuffer == '>')))) GetLine(V); } static int endEMBL(char *s, int *addend) { *addend = 0; /* Some people (Berlin 5S rRNA database, f'r instance) use * an extended EMBL format that attaches extra data after * the sequence -- watch out for that. We use the fact that * real EMBL sequence lines begin with five spaces. * * We can use this as the sole end test because readEMBL() will * advance to the next ID line before starting to read again. */ return (strncmp(s," ",5) != 0); /* return ((strstr(s,"//") != NULL) || (strstr(s,"ID ") == s)); */ } static void readEMBL(struct ReadSeqVars *V) { char *sptr; /* make sure we have first line */ while (!feof(V->f) && strncmp(V->sbuffer, "ID ", 4) != 0) GetLine(V); if ((sptr = strtok(V->sbuffer+5, "\n\t ")) != NULL) { SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); SetSeqinfoString(V->sqinfo, sptr, SQINFO_ID); } do { GetLine(V); if (!feof(V->f) && strstr(V->sbuffer, "AC ") == V->sbuffer) { if ((sptr = strtok(V->sbuffer+5, "; \t\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_ACC); } else if (!feof(V->f) && strstr(V->sbuffer, "DE ") == V->sbuffer) { if ((sptr = strtok(V->sbuffer+5, "\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_DESC); } } while (! feof(V->f) && strncmp(V->sbuffer,"SQ",2) != 0); readLoop(0, endEMBL, V); /* reading a real EMBL database file, we keep the source coords */ V->sqinfo->start = 1; V->sqinfo->stop = V->seqlen; V->sqinfo->olen = V->seqlen; V->sqinfo->flags |= SQINFO_START | SQINFO_STOP | SQINFO_OLEN; /* load next record's ID line */ while (!feof(V->f) && strncmp(V->sbuffer, "ID ", 4) != 0) GetLine(V); } static int endZuker(char *s, int *addend) { *addend = 0; return( *s == '(' ); } static void readZuker(struct ReadSeqVars *V) { char *sptr; GetLine(V); /*s == "seqLen seqid string..."*/ if ((sptr = strtok(V->sbuffer+6, " \t\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); if ((sptr = strtok(NULL, "\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_DESC); readLoop(0, endZuker, V); while (!(feof(V->f) | ((*V->sbuffer != '\0') & (*V->sbuffer == '(')))) GetLine(V); } static void readUWGCG(struct ReadSeqVars *V) { char *si; char *sptr; int done; V->seqlen = 0; /*writeseq: " %s Length: %d (today) Check: %d ..\n" */ /*drop above or ".." from id*/ if ((si = strstr(V->sbuffer," Length: ")) != NULL) *si = 0; else if ((si = strstr(V->sbuffer,"..")) != NULL) *si = 0; if ((sptr = strtok(V->sbuffer, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); do { done = feof(V->f); GetLine(V); if (! done) addseq(V->sbuffer, V); } while (!done); } static void readSquid(struct ReadSeqVars *V) { char *sptr; int dostruc = FALSE; while (strncmp(V->sbuffer, "NAM ", 4) != 0) GetLine(V); if ((sptr = strtok(V->sbuffer+4, "\n\t ")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_NAME); /*CONSTCOND*/ while (1) { GetLine(V); if (feof(V->f)) {squid_errno = SQERR_FORMAT; return; } if (strncmp(V->sbuffer, "SRC ", 4) == 0) { if ((sptr = strtok(V->sbuffer+4, " \t\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_ID); if ((sptr = strtok(NULL, " \t\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_ACC); if ((sptr = strtok(NULL, ".")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_START); if ((sptr = strtok(NULL, ".:")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_STOP); if ((sptr = strtok(NULL, ": \t\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_OLEN); } else if (strncmp(V->sbuffer, "DES ", 4) == 0) { if ((sptr = strtok(V->sbuffer+4, "\n")) != NULL) SetSeqinfoString(V->sqinfo, sptr, SQINFO_DESC); } else if (strncmp(V->sbuffer,"SEQ", 3) == 0) break; } if (strstr(V->sbuffer, "+SS") != NULL) dostruc = TRUE; V->seqlen = 0; /*CONSTCOND*/ while (1) { /* sequence line */ GetLine(V); if (feof(V->f) || strncmp(V->sbuffer, "++", 2) == 0) break; addseq(V->sbuffer, V); /* structure line */ if (dostruc) { GetLine(V); if (feof(V->f)) { squid_errno = SQERR_FORMAT; return; } addstruc(V->sbuffer, V); } } while (!feof(V->f) && strncmp(V->sbuffer, "NAM ", 4) != 0) GetLine(V); } /* Function: SeqfileOpen() * * Purpose : Open a sequence database file and prepare for reading * sequentially. * * Args: filename - name of file to open * format - format of file * env - environment variable for path (e.g. BLASTDB) * * Returns opened SQFILE ptr, or NULL on failure. */ SQFILE * SeqfileOpen(char *filename, int format, char *env) { SQFILE *dbfp; if ((dbfp = (SQFILE *) malloc (sizeof(SQFILE))) == NULL) { squid_errno = SQERR_MEM; return NULL; } if ((dbfp->f = fopen(filename, "r")) == NULL && (dbfp->f = EnvFileOpen(filename, env)) == NULL) { squid_errno = SQERR_NOFILE; return NULL; } /* If it's a SELEX- or MSF-formatted alignment file, we * hack a way to fake sequential access: read the whole * alignment into a static at once. Relies on the prediction * that these files will always be relatively small, unlike * GenBank or EMBL databases. */ /* Note (Tue Aug 30 11:57:19 1994): This cause a bug: * ReadSeq() is not reentrant for alignment files. */ if (format == kSelex || format == kMSF || format == kClustal) { if (! ReadAlignment(filename, format, &ali_aseqs, &ali_num, &ali_ainfo)) return NULL; if (! DealignAseqs(ali_aseqs, ali_num, &ali_rseqs)) return NULL; curridx = 0; } /* Load the first line. */ GetLine(dbfp); return dbfp; } /* Function: SeqfilePosition() * * Purpose: Move to a particular offset in a seqfile. * Will not work on interleaved files (SELEX, MSF). */ void SeqfilePosition(SQFILE *sqfp, long offset) { fseek(sqfp->f, offset, SEEK_SET); GetLine(sqfp); } void SeqfileClose(SQFILE *sqfp) { fclose(sqfp->f); free(sqfp); } /* Function: ReadSeq() * * Purpose: Read next sequence from an open database file. * Return the sequence and associated info. * * Args: fp - open sequence database file pointer * format - format of the file (previously determined * by call to SeqfileFormat()) * ret_seq - RETURN: sequence * sqinfo - RETURN: filled in w/ other information * * Return: 1 on success, 0 on failure. * ret_seq and some field of sqinfo are allocated here, * The preferred call mechanism to properly free the memory is: * * SQINFO sqinfo; * char *seq; * * ReadSeq(fp, format, &seq, &sqinfo); * ... do something... * FreeSequence(seq, &sqinfo); */ int ReadSeq(SQFILE *V, int format, char **ret_seq, SQINFO *sqinfo) { int gotuw; squid_errno = SQERR_OK; if (format < kMinFormat || format > kMaxFormat) { squid_errno = SQERR_FORMAT; *ret_seq = NULL; return 0; } /* Here's the hack for accessing sequences from * the multiple sequence alignment formats */ if (format == kMSF || format == kSelex || format == kClustal) { if (curridx >= ali_num) { /* none left; free static ptrs */ FreeAlignment(ali_aseqs, ali_num, &ali_ainfo); free(ali_rseqs); /* only free rseqs pointer array */ return 0; } SeqinfoCopy(sqinfo, &(ali_ainfo.sqinfo[curridx])); *ret_seq = ali_rseqs[curridx]; curridx++; return 1; } else { if (feof(V->f)) return 0; V->seq = (char*) calloc (kStartLength+1, sizeof(char)); V->maxseq = kStartLength; V->seqlen = 0; V->sqinfo = sqinfo; V->sqinfo->flags = 0; V->dash_equals_n = (format == kEMBL) ? TRUE : FALSE; switch (format) { case kIG : readIG(V); break; case kStrider : readStrider(V); break; case kGenBank : readGenBank(V); break; case kNBRF : readNBRF(V); break; case kPearson : readPearson(V); break; case kXPearson: readPearson(V); break; case kEMBL : readEMBL(V); break; case kZuker : readZuker(V); break; case kPIR : readPIR(V); break; case kSquid : readSquid(V); break; case kGCGdata : readGCGdata(V); break; case kGCG: do { /* skip leading comments on GCG file */ gotuw = (strstr(V->sbuffer,"..") != NULL); if (gotuw) readUWGCG(V); GetLine(V); } while (! feof(V->f)); break; case kIdraw: /* SRE: no attempt to read idraw postscript */ default: squid_errno = SQERR_FORMAT; free(V->seq); return 0; } V->seq[V->seqlen] = 0; /* stick a string terminator on it */ } /* Cleanup */ sqinfo->len = V->seqlen; sqinfo->flags |= SQINFO_LEN; *ret_seq = V->seq; if (squid_errno == SQERR_OK) return 1; else return 0; } /* Function: SeqfileFormat() * * Purpose: Determine format of seqfile, and return it * through ret_format. From Gilbert's seqFileFormat(). * * Args: filename - name of sequence file * ret_format - RETURN: format code for file, see squid.h * for codes. * env - name of environment variable containing * a directory path that filename might also be * found in. "BLASTDB", for example. Can be NULL. * * Return: 1 on success, 0 on failure. */ int SeqfileFormat(char *filename, int *ret_format, char *env) { int foundIG = 0; int foundStrider = 0; int foundGB = 0; int foundEMBL = 0; int foundNBRF = 0; int foundPearson = 0; int foundXPearson= 0; int foundZuker = 0; int gotGCGdata = 0; int gotPIR = 0; int gotSquid = 0; int gotuw = 0; int gotMSF = 0; int gotClustal = 0; int done = 0; int format = kUnknown; int nlines= 0, dnalines= 0; int splen = 0; char sp[LINEBUFLEN]; FILE *fseq; #define ReadOneLine(sp) \ { done |= (feof(fseq)); \ readline( fseq, sp); \ if (!done) { splen = (int) strlen(sp); ++nlines; } } if ((fseq = fopen(filename, "r")) == NULL && (fseq = EnvFileOpen(filename, env)) == NULL) { squid_errno = SQERR_NOFILE; return 0; } /* Look at a line at a time */ while ( !done ) { ReadOneLine(sp); if (sp==NULL || *sp=='\0') /*EMPTY*/ ; /* high probability identities: */ else if (strstr(sp, " MSF:") != NULL && strstr(sp, " Type:") != NULL && strstr(sp, " Check:") != NULL) gotMSF = 1; else if (strncmp(sp, "CLUSTAL ", 8) == 0 && strstr( sp, "multiple sequence alignment")) gotClustal = 1; else if (strstr(sp," Check: ") != NULL) gotuw= 1; else if (strncmp(sp, "///", 3) == 0 || strncmp(sp, "ENTRY ", 6) == 0) gotPIR = 1; else if (strncmp(sp, "++", 2) == 0 || strncmp(sp, "NAM ", 4) == 0) gotSquid = 1; else if (strncmp(sp, ">>>>", 4) == 0 && strstr(sp, "Len: ")) gotGCGdata = 1; /* uncertain identities: */ else if (*sp ==';') { if (strstr(sp,"Strider") !=NULL) foundStrider= 1; else foundIG= 1; } else if (strncmp(sp,"LOCUS",5) == 0 || strncmp(sp,"ORIGIN",5) == 0) foundGB= 1; else if (*sp == '>') { if (sp[3] == ';') foundNBRF = 1; else if (strstr(sp, "::") && strstr(sp, "..")) foundXPearson = 1; else foundPearson = 1; } else if (strstr(sp,"ID ") == sp || strstr(sp,"SQ ") == sp) foundEMBL= 1; else if (*sp == '(') foundZuker= 1; else { switch (Seqtype( sp )) { case kDNA: case kRNA: if (splen>20) dnalines++; break; default: break; } } if (gotMSF) {format = kMSF; done = 1; } else if (gotClustal) {format = kClustal; done = 1; } else if (gotSquid) {format = kSquid; done = 1; } else if (gotPIR) {format = kPIR; done = 1; } else if (gotGCGdata) {format = kGCGdata; done = 1; } else if (gotuw) { if (foundIG) format= kIG; /* a TOIG file from GCG for certain */ else format= kGCG; done= 1; } else if ((dnalines > 1) || done || (nlines > 500)) { /* decide on most likely format */ /* multichar idents: */ if (foundStrider) format= kStrider; else if (foundGB) format= kGenBank; else if (foundEMBL) format= kEMBL; else if (foundNBRF) format= kNBRF; /* single char idents: */ else if (foundIG) format= kIG; else if (foundPearson) format= kPearson; else if (foundXPearson)format= kXPearson; else if (foundZuker) format= kZuker; /* spacing ident: */ else if (IsSELEXFormat(filename)) format= kSelex; /* no format chars: */ else { squid_errno = SQERR_FORMAT; return 0; } done= 1; } } if (fseq!=NULL) fclose(fseq); *ret_format = format; return 1; #undef ReadOneLine } /* Function: GCGBinaryToSequence() * * Purpose: Convert a GCG 2BIT binary string to DNA sequence. * 0 = C 1 = T 2 = A 3 = G * 4 nts/byte * * Args: seq - binary sequence. Converted in place to DNA. * len - length of DNA. binary is (len+3)/4 bytes */ int GCGBinaryToSequence(char *seq, int len) { int bpos; /* position in binary */ int spos; /* position in sequence */ char twobit; int i; for (bpos = (len-1)/4; bpos >= 0; bpos--) { twobit = seq[bpos]; spos = bpos*4; for (i = 3; i >= 0; i--) { switch (twobit & 0x3) { case 0: seq[spos+i] = 'C'; break; case 1: seq[spos+i] = 'T'; break; case 2: seq[spos+i] = 'A'; break; case 3: seq[spos+i] = 'G'; break; } twobit = twobit >> 2; } } seq[len] = '\0'; return 1; } int GCGchecksum(char *seq, int seqlen) { int check = 0, count = 0, i; for (i = 0; i < seqlen; i++) { count++; check += count * sre_toupper((int) seq[i]); if (count == 57) count = 0; } return (check % 10000); } /* Function: GCGMultchecksum() * * Purpose: Simple modification of GCGchecksum(), * to create a checksum for multiple sequences. * Gaps count. * * Args: seqs - sequences to be checksummed * nseq - number of sequences * * Return: the checksum, a number between 0 and 9999 */ int GCGMultchecksum(char **seqs, int nseq) { int check = 0; int count = 0; int idx; char *sptr; for (idx = 0; idx < nseq; idx++) for (sptr = seqs[idx]; *sptr; sptr++) { count++; check += count * sre_toupper((int) *sptr); if (count == 57) count = 0; } return (check % 10000); } /* Function: Seqtype() * * Purpose: Returns a (very good) guess about type of sequence: * kDNA, kRNA, kAmino, or kOtherSeq. * * Modified from, and replaces, Gilbert getseqtype(). */ int Seqtype(char *seq) { int saw; /* how many non-gap characters I saw */ char c; int po = 0; /* count of protein-only */ int nt = 0; /* count of t's */ int nu = 0; /* count of u's */ int na = 0; /* count of nucleotides */ int aa = 0; /* count of amino acids */ int no = 0; /* count of others */ /* Look at the first 300 non-gap characters */ for (saw = 0; *seq != '\0' && saw < 300; seq++) { c = sre_toupper((int) *seq); if (! isgap(c)) { if (strchr(protonly, c)) po++; else if (strchr(primenuc,c)) { na++; if (c == 'T') nt++; else if (c == 'U') nu++; } else if (strchr(aminos,c)) aa++; else if (isalpha(c)) no++; saw++; } } if (no > 0) return kOtherSeq; else if (po > 0) return kAmino; else if (na > aa) { if (nu > nt) return kRNA; else return kDNA; } else return kAmino; } int WriteSeq(FILE *outf, int outform, char *seq, SQINFO *sqinfo) { int numline = 0; int lines = 0, spacer = 0, width = 50, tab = 0; int i, j, l, l1, ibase; char endstr[10]; char s[100]; /* buffer for sequence */ char ss[100]; /* buffer for structure */ int checksum = 0; int seqlen; int which_case; /* 0 = do nothing. 1 = upper case. 2 = lower case */ int dostruc; /* TRUE to print structure lines*/ which_case = 0; dostruc = FALSE; seqlen = (sqinfo->flags & SQINFO_LEN) ? sqinfo->len : strlen(seq); /* intercept Selex-format requests - SRE */ if (outform == kSelex) { fprintf(outf, "%10s %s\n", sqinfo->name, seq); return 1; } if (outform == kClustal || outform == kMSF) { Warn("Tried to write Clustal or MSF with WriteSeq() -- bad, bad."); return 1; } strcpy( endstr,""); l1 = 0; /* 10Nov91: write this out in all possible formats: */ checksum = GCGchecksum(seq, seqlen); switch (outform) { case kUnknown: /* no header, just sequence */ strcpy(endstr,"\n"); /* end w/ extra blank line */ break; case kGenBank: fprintf(outf,"LOCUS %s %d bp\n", (sqinfo->flags & SQINFO_ID) ? sqinfo->id : sqinfo->name, seqlen); fprintf(outf,"DEFINITION %s\n", (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : "-"); fprintf(outf,"ACCESSION %s\n", (sqinfo->flags & SQINFO_ACC) ? sqinfo->acc : "-"); fprintf(outf,"ORIGIN \n"); spacer = 11; numline = 1; strcpy(endstr, "\n//"); break; case kGCGdata: fprintf(outf, ">>>>%s 9/95 ASCII Len: %d\n", sqinfo->name, seqlen); fprintf(outf, "%s\n", (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : "-"); break; case kNBRF: if (Seqtype(seq) == kAmino) fprintf(outf,">P1;%s\n", sqinfo->name); else fprintf(outf,">DL;%s\n", sqinfo->name); fprintf(outf,"%s %s\n", sqinfo->name, (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : ""); spacer = 11; strcpy(endstr,"*"); break; case kPIR: fprintf(outf, "ENTRY %s\n", (sqinfo->flags & SQINFO_ID) ? sqinfo->id : sqinfo->name); fprintf(outf, "TITLE %s\n", (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : "-"); fprintf(outf, "ACCESSION %s\n", (sqinfo->flags & SQINFO_ACC) ? sqinfo->acc : "-"); fprintf(outf, "SUMMARY #Length %d #Checksum %d\n", sqinfo->len, checksum); fprintf(outf, "SEQUENCE\n"); fprintf(outf, " 5 10 15 20 25 30\n"); spacer = 2; /* spaces after every residue */ numline = 1; /* number lines w/ coords */ width = 30; /* 30 aa per line */ strcpy(endstr, "\n///"); break; case kSquid: fprintf(outf, "NAM %s\n", sqinfo->name); if (sqinfo->flags & (SQINFO_ID | SQINFO_ACC | SQINFO_START | SQINFO_STOP | SQINFO_OLEN)) fprintf(outf, "SRC %s %s %d..%d::%d\n", (sqinfo->flags & SQINFO_ID) ? sqinfo->id : "-", (sqinfo->flags & SQINFO_ACC) ? sqinfo->acc : "-", (sqinfo->flags & SQINFO_START) ? sqinfo->start : 0, (sqinfo->flags & SQINFO_STOP) ? sqinfo->stop : 0, (sqinfo->flags & SQINFO_OLEN) ? sqinfo->olen : 0); if (sqinfo->flags & SQINFO_DESC) fprintf(outf, "DES %s\n", sqinfo->desc); if (sqinfo->flags & SQINFO_SS) { fprintf(outf, "SEQ +SS\n"); dostruc = TRUE; /* print structure lines too */ } else fprintf(outf, "SEQ\n"); numline = 1; /* number seq lines w/ coords */ strcpy(endstr, "\n++"); break; case kEMBL: fprintf(outf,"ID %s\n", (sqinfo->flags & SQINFO_ID) ? sqinfo->id : sqinfo->name); fprintf(outf,"AC %s\n", (sqinfo->flags & SQINFO_ACC) ? sqinfo->acc : "-"); fprintf(outf,"DE %s\n", (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : "-"); fprintf(outf,"SQ %d BP\n", seqlen); strcpy(endstr, "\n//"); /* 11Oct90: bug fix*/ tab = 5; /** added 31jan91 */ spacer = 11; /** added 31jan91 */ break; case kGCG: fprintf(outf,"%s\n", sqinfo->name); if (sqinfo->flags & SQINFO_ACC) fprintf(outf,"ACCESSION %s\n", sqinfo->acc); if (sqinfo->flags & SQINFO_DESC) fprintf(outf,"DEFINITION %s\n", sqinfo->desc); fprintf(outf," %s Length: %d (today) Check: %d ..\n", sqinfo->name, seqlen, checksum); spacer = 11; numline = 1; strcpy(endstr, "\n"); /* this is insurance to help prevent misreads at eof */ break; case kStrider: /* ?? map ?*/ fprintf(outf,"; ### from DNA Strider ;-)\n"); fprintf(outf,"; DNA sequence %s, %d bases, %d checksum.\n;\n", sqinfo->name, seqlen, checksum); strcpy(endstr, "\n//"); break; /* SRE: Don had Zuker default to Pearson, which is not intuitive or helpful, since Zuker's MFOLD can't read Pearson format. More useful to use kIG */ case kZuker: which_case = 1; /* MFOLD requires upper case. */ /*FALLTHRU*/ case kIG: fprintf(outf,";%s %s\n", sqinfo->name, (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : ""); fprintf(outf,"%s\n", sqinfo->name); strcpy(endstr,"1"); /* == linear dna */ break; case kRaw: /* Raw: just print the whole sequence. */ fprintf(outf, "%s\n", seq); return 1; case kXPearson: if (sqinfo->flags & SQINFO_WGT) fprintf(outf, "> %s %f ", sqinfo->name, sqinfo->weight); else fprintf(outf, "> %s - ", sqinfo->name); fprintf(outf, "%s %s %d..%d::%d %s\n", (sqinfo->flags & SQINFO_ID) ? sqinfo->id : "-", (sqinfo->flags & SQINFO_ACC) ? sqinfo->acc : "-", (sqinfo->flags & SQINFO_START) ? sqinfo->start : 0, (sqinfo->flags & SQINFO_STOP) ? sqinfo->stop : 0, (sqinfo->flags & SQINFO_OLEN) ? sqinfo->olen : 0, (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : "-"); break; default : case kPearson: fprintf(outf,">%s %s\n", sqinfo->name, (sqinfo->flags & SQINFO_DESC) ? sqinfo->desc : ""); break; } if (which_case == 1) s2upper(seq); if (which_case == 2) s2lower(seq); width = MIN(width,100); for (i=0, l=0, ibase = 1, lines = 0; i < seqlen; ) { if (l1 < 0) l1 = 0; else if (l1 == 0) { if (numline) fprintf(outf,"%8d ",ibase); for (j=0; jflags & SQINFO_SS) ? sqinfo->ss[i] : '.'; l++; i++; l1++; /* don't count spaces for width*/ if (l1 == width || i == seqlen) { s[l] = ss[l] = '\0'; l = 0; l1 = 0; if (dostruc) { fprintf(outf, "%s\n", s); if (numline) fprintf(outf," "); for (j=0; jgsifp = fopen(gsifile, "r")) == NULL) { squid_errno = SQERR_NOFILE; return NULL; } if (! fread(magic, GSI_KEYSIZE, 1, gsi->gsifp)) { squid_errno = SQERR_NODATA; return NULL; } if (strcmp(magic, "GSI") != 0) { squid_errno = SQERR_FORMAT; return NULL; } if (! fread(&(gsi->nfiles), sizeof(short), 1, gsi->gsifp)) { squid_errno = SQERR_NODATA; return NULL; } if (! fread(&(gsi->recnum), sizeof(long), 1, gsi->gsifp)) { squid_errno = SQERR_NODATA; return NULL; } return gsi; } /* Function: GSIGetOffset() * * Purpose: From a key (sequence name), find a disk offset * in an open general sequence index file by binary * search. Presumably GSI indexing could be even faster * if we used hashing. * * Args: gsi - GSI index file, opened by GSIOpen() * key - name of key to retrieve indices for * ret_seqfile - pre-alloced char[32] array for seqfile name * ret_offset - return: disk offset in seqfile. */ int GSIGetOffset(GSIFILE *gsi, char *key, char *ret_seqfile, long *ret_offset) { long left, right, mid; int cmp; char name[GSI_KEYSIZE + 1]; short filenum; name[GSI_KEYSIZE] = '\0'; left = gsi->nfiles + 1; right = gsi->nfiles + gsi->recnum; mid = (left + right) / 2; fseek(gsi->gsifp, mid * GSI_RECSIZE, SEEK_SET); while (fread(name, GSI_KEYSIZE, 1, gsi->gsifp)) { cmp = strcmp(name, key); if (cmp == 0) break; /* name same as key: done! */ else if (left >= right) return 0; /* failed to find key: fail! */ else if (cmp < 0) left = mid + 1; /* name greater than key */ else if (cmp > 0) right = mid - 1; /* name less than key */ mid = (left + right) / 2; fseek(gsi->gsifp, mid * GSI_RECSIZE, SEEK_SET); } /* Read the remainder of the record */ if (! fread(&filenum, sizeof(short), 1, gsi->gsifp)) { squid_errno = SQERR_NODATA; return 0; } if (! fread(ret_offset, sizeof(long), 1, gsi->gsifp)) { squid_errno = SQERR_NODATA; return 0; } /* Look up the sequence name */ fseek(gsi->gsifp, filenum * GSI_RECSIZE, SEEK_SET); if (! fread(ret_seqfile, GSI_KEYSIZE, 1, gsi->gsifp)) { squid_errno = SQERR_NODATA; return 0; } return 1; } /* Function: GSIClose() * * Purpose: Close an open GSI sequence index file. */ void GSIClose(GSIFILE *gsi) { fclose(gsi->gsifp); free(gsi); } /* Function: EnvFileOpen() * Date: Sun Feb 12 10:55:29 1995 * * Purpose: Open a file, given a file name and an environment * variable that contains a directory path. Files * are opened read-only. Uses UNIX getenv() and * thus is UNIX-specific. * * For instance: * fp = EnvFileOpen("BLOSUM45", "BLASTMAT"); * or: * fp = EnvFileOpen("swiss", "BLASTDB"); * * Args: fname - name of file to open * env - name of environment variable containing path * * Return: FILE * to open file, or NULL on failure -- same as fopen() */ FILE * EnvFileOpen(char *fname, char *env) { FILE *fp; char *path; char full[512]; if (env == NULL) return NULL; if ((path = getenv(env)) == NULL) return NULL; if (((int) strlen(fname) + (int) strlen(env) + 2) > 512) return NULL; sprintf(full, "%s/%s", path, fname); fp = fopen(full, "r"); return fp; } tRNAscan-SE-2.0/src/scan_main.c0000644000543100007160000002176111021467305015523 0ustar pchanlowelab/* scan_main.c * Mon Jan 31 11:04:57 1994 * * main() for database scanning with a covariance model. */ #include #include #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "squid.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "cg:ho:t:w:D:E:F" static char usage[] = "\ Usage: covels [-options] \n\ where options are:\n\ -c : do complementary strand too\n\ -g : set background expected GC content (0.5 default)\n\ -h : print short help and version info\n\ -o : save hits in \n\ -t : set score reporting threshold\n\ -w : set scanning window size\n\ CRASH PROTECTION OPTIONS:\n\ -D : save name of last sequence processed\n\ EXPERIMENTAL OPTIONS:\n\ -E : set epsilon for fast search\n\ -F : fast heuristic search\n"; static char banner[] = "covels - scan sequences for matches to an RNA covariance model"; static char *ext_seqname; static int ext_seqlen; static int in_complement; static FILE *ext_ofp; static int print_hit(int i, int j, double sc); int main(int argc, char **argv) { char *seq; /* a sequence to score */ SQINFO sqinfo; /* info about sequence */ char *rev; /* rev complement of seq */ char *seqfile; /* sequence file */ int fmt; /* format of sequence file */ SQFILE *dbfp; /* open sequence file for reading */ char *cmfile; /* file containing covariance model */ struct cm_s *cm; /* model */ struct istate_s *icm; /* integer log-odds search model */ struct pstate_s *pcm; /* rearranged probability model */ int statenum; /* # of states in icm, pcm */ int *minb, *maxb; /* bounds for fast heuristic search */ double rfreq[ALPHASIZE]; /* random model */ int fast; /* TRUE if trying fast heuristic search */ double epsilon; /* how much probability we're willing to lose */ int do_complement; /* TRUE if searching complementary strand too */ double thresh; /* threshold score for reporting a match */ char *outfile; /* save file for scores */ int window; /* size of search window, symbols */ char *donefile; /* crash protection: save name of last seq */ double gcfrac; /* background gc fraction */ #ifdef MEMDEBUG unsigned long histid1, histid2, orig_size, curr_size; #endif int optc; extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ /*********************************************** * Parse command line ***********************************************/ do_complement = FALSE; thresh = 0.0; window = 100; outfile = NULL; fast = FALSE; epsilon = 1e-9; donefile = NULL; gcfrac = 0.5; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'c': do_complement = TRUE; break; case 'g': gcfrac = (double) atof(optarg); break; case 'o': outfile = optarg; break; case 't': thresh = (double) atof(optarg); break; case 'w': window = atoi(optarg); break; case 'D': donefile = optarg; break; case 'E': epsilon = atof(optarg); break; case 'F': fast = TRUE; break; case 'h': printf("%s\n version %s (%s)\n%s\n", banner, RELEASE, RELEASEDATE, usage); exit(0); default: Die("unrecognized option %c\n", optc); } if (argc - optind != 2) Die("%s\n", usage); cmfile = argv[argc-2]; seqfile = argv[argc-1]; /* The random model probabilities */ rfreq[1] = rfreq[2] = gcfrac / 2.0; rfreq[0] = rfreq[3] = (1.0 - gcfrac) / 2.0; if (! SeqfileFormat(seqfile, &fmt, NULL)) Die("Failed to determine format of sequence database %s", seqfile); if ((dbfp = SeqfileOpen(seqfile, fmt, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); if (! ReadCM(cmfile, &cm)) Die("Failed to read model from file %s", cmfile); if (! RearrangeCM(cm, rfreq, &icm, &statenum)) Die("Failed to create search CM"); /* Fast version. * Use lower/upper bounds on possible subsequence lengths * for each state. These are obtained probabilistically. */ if (fast) { double **lmx; if (! MakePCM(cm, &pcm, &statenum)) Die("Failed to rearrange CM for bounds calculations"); NormalizePCM(pcm, statenum); LengthDistribution(pcm, statenum, window, &lmx); LengthBounds(lmx, statenum, window, epsilon, &minb, &maxb); Free2DArray(lmx, statenum); free(pcm); } ext_ofp = NULL; if (outfile != NULL) if ((ext_ofp = fopen(outfile, "w")) == NULL) Die("Failed to open score output file %s for writing", outfile); /*********************************************** * Print banner ***********************************************/ puts(banner); printf(" version %s, %s\n\n", RELEASE, RELEASEDATE); printf("---------------------------------------------------\n"); printf("Database to search/score: %s\n", seqfile); printf("Model: %s\n", cmfile); printf("Reporting threshold: %.2f\n", thresh); printf("Maximum match size: %d\n", window); printf("Complementary strand searched: %s\n", do_complement? "yes":"no"); if (outfile != NULL) printf("Scores saved to file: %s\n", outfile); printf("GC%% of background model: %.0f%%\n", (gcfrac*100.)); printf("---------------------------------------------------\n"); puts(""); /*********************************************** * Score each sequence ***********************************************/ #ifdef MEMDEBUG orig_size = malloc_size(&histid1); #endif while (ReadSeq(dbfp, fmt, &seq, &sqinfo)) { s2upper(seq); /* some communication to report_local through statics */ ext_seqname = sqinfo.name; ext_seqlen = sqinfo.len; in_complement = FALSE; if (fast) { if (! FastViterbiScan(icm, statenum, minb, maxb, seq, window, thresh, print_hit)) Die("Search across sequence %s failed", sqinfo.name); } else if (! ViterbiScan(icm, statenum, seq, window, thresh, print_hit)) Die("Search across sequence %s failed", sqinfo.name); if (do_complement) { in_complement = TRUE; if ((rev = (char *) malloc ((sqinfo.len+1) * sizeof(char))) == NULL) Die("malloc failed"); revcomp(rev, seq); if (fast) { if (! FastViterbiScan(icm, statenum, minb, maxb, rev, window, thresh, print_hit)) Die("Search across sequence %s failed", sqinfo.name); } else if (! ViterbiScan(icm, statenum, rev, window, thresh, print_hit)) Die("Search across complement of sequence %s failed", sqinfo.name); free(rev); } if (donefile != NULL) { FILE *dfp; if ((dfp = fopen(donefile, "w")) == NULL) Die("Failed to open file for saving name of last finished sequence"); fprintf(dfp, "%s\n", sqinfo.name); fclose(dfp); } FreeSequence(seq, &sqinfo); #ifdef MEMDEBUG curr_size = malloc_size(&histid2); if (curr_size != orig_size) { Warn("memory leak: current size %ul, starting size %ul\n", curr_size, orig_size); malloc_list(2,histid1, histid2); } #endif } if (donefile != NULL) { FILE *dfp; if ((dfp = fopen(donefile, "w")) == NULL) Die("Failed to open file for saving name of last finished sequence"); fprintf(dfp, "Search complete."); fclose(dfp); } if (fast) { free(minb); free(maxb); } free(icm); FreeCM(cm); SeqfileClose(dbfp); return 0; } /* Function: print_hit() * * Purpose: Simple function that determines the format of printing * out scanning hits. It gets the start point, end point, * and score of the match; any other info it wants to print * must come through static external variables in this file. * * Args: i - start point of match * j - end point of match * sc - score of match * * Return: (void) */ static int print_hit(int i, int j, double sc) { if (in_complement) printf("%6.2f %5d %5d : %s\n", sc, ext_seqlen-i+1, ext_seqlen-j+1, ext_seqname); else printf("%6.2f %5d %5d : %s\n", sc, i, j, ext_seqname); if (ext_ofp != NULL) { if (in_complement) fprintf(ext_ofp, "%6.2f %5d %5d : %s\n", sc, ext_seqlen-i+1, ext_seqlen-j+1, ext_seqname); else fprintf(ext_ofp, "%6.2f %5d %5d : %s\n", sc, i, j, ext_seqname); fflush(ext_ofp); } return 1; } tRNAscan-SE-2.0/src/sqfuncs.h0000644000543100007160000001633211021467306015261 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ #ifndef SQFUNCSH_INCLUDED #define SQFUNCSH_INCLUDED /* sqfuncs.h * SRE, Mon Jul 12 12:20:00 1993 * * Prototypes for squid library functions; * also makes a good reference list for what the package contains. * Slowly being added to as I ANSI-fy squid. */ /* * from aligneval.c */ extern float ComparePairAlignments(char *known1, char *known2, char *calc1, char *calc2); extern float CompareRefPairAlignments(int *ref, char *known1, char *known2, char *calc1, char *calc2); extern float CompareMultAlignments(char **kseqs, char **tseqs, int N); extern float CompareRefMultAlignments(int *ref, char **kseqs, char **tseqs, int N); extern void PairwiseIdentity(char *s1, char *s2, int allow_ragged, float *ret_id1, float *ret_id2, float *ret_idtot); /* * from alignio.c */ extern void FreeAlignment(char **aseqs, int nseq, struct aliinfo_s *ainfo); extern int MakeAlignedString(char *aseq, int alen, char *ss, char **ret_s); extern int MakeDealignedString(char *aseq, int alen, char *ss, char **ret_s); extern int WritePairwiseAlignment(FILE *ofp, char *aseq1, char *name1, int spos1, char *aseq2, char *name2, int spos2, int **pam, int indent); extern int MingapAlignment(char **aseqs, int num, struct aliinfo_s *ainfo); extern int RandomAlignment(char **rseqs, SQINFO *sqinfo, int nseq, float pop, float pex, char ***ret_aseqs, AINFO *ainfo); /* from cluster.c */ extern int Cluster(float **mx, int N, enum clust_strategy mode, struct phylo_s **ret_tree); extern struct phylo_s *AllocPhylo(int N); extern void FreePhylo(struct phylo_s *tree, int N); extern int MakeDiffMx(char **aseqs, int num, int alen, int allow_ragged, float ***ret_dmx); extern int MakeIdentityMx(char **aseqs, int num, int alen, int allow_ragged, float ***ret_dix); /* * from dayhoff.c */ extern int ParsePAMFile(FILE *fp, int ***ret_pam, float *ret_scale); extern void ScalePAM(int **pam, int scale); /* from getopt.c */ extern int Getopt(int argc, char **argv, struct opt_s *opt, int nopts, char *usage, int *ret_optind, char **ret_optname, char **ret_optarg); /* from interleaved.c */ extern int ReadInterleaved(char *seqfile, int (*parse_header)(FILE *, AINFO *, int *), int (*is_dataline)(char *, char *), char ***ret_aseqs, int *ret_num, AINFO *ainfo); extern int ReadAlignment(char *seqfile, int format, char ***ret_aseqs, int *ret_num, struct aliinfo_s *ainfo); /* * from msf.c */ extern int WriteMSF(FILE *fp, char **aseqs, int num, struct aliinfo_s *ainfo); extern void FlushAlignment(char **aseqs, int num, int *ret_alen); /* from revcomp.c */ extern char *revcomp(char *comp, char *seq); /* * from selex.c */ extern int ReadSELEX(char *seqfile, char ***ret_aseqs, int *ret_num, struct aliinfo_s *ret_aliinfo); extern int WriteSELEX(FILE *fp, char **aseqs, int num, struct aliinfo_s *ainfo, int cpl); extern int DealignAseqs(char **aseqs, int num, char ***ret_rseqs); extern int IsSELEXFormat(char *filename); extern int TruncateNames(char **names, int N); /* OBSOLETE? */ extern FILE *EnvFileOpen(char *fname, char *env); /* * from seqencode.c */ extern int seqcmp(char *s1, char *s2, int allow); extern int seqncmp(char *s1, char *s2, int n, int allow); extern int seqencode(char *codeseq,char *str); extern int coded_revcomp(char *comp, char *seq); extern int seqdecode(char *str, char *codeseq); extern int seqndecode(char *str, char *codeseq, int n); /* * from sqerror.c */ extern int Die(char *format, ...); extern int Warn(char *format, ...); /* * from sqio.c */ extern void FreeSequence(char *seq, SQINFO *sqinfo); extern int SetSeqinfoString(SQINFO *sqinfo, char *sptr, int flag); extern void SeqinfoCopy(SQINFO *sq1, SQINFO *sq2); extern void ToDNA(char *seq); extern void ToRNA(char *seq); extern int ReadMultipleRseqs(char *seqfile, int fformat, char ***ret_rseqs, SQINFO **ret_sqinfo, int *ret_num); extern SQFILE *SeqfileOpen(char *filename, int format, char *env); extern void SeqfilePosition(SQFILE *sqfp, long offset); extern void SeqfileClose(SQFILE *sqfp); extern int ReadSeq(SQFILE *fp, int format, char **ret_seq, SQINFO *sqinfo); extern int GCGBinaryToSequence(char *seq, int len); extern int GCGchecksum(char *seq, int seqlen); extern int GCGMultchecksum(char **seqs, int nseq); extern int SeqfileFormat(char *filename, int *ret_format, char *env); extern int WriteSeq(FILE *outf, int outfmt, char *seq, SQINFO *sqinfo); extern int Seqtype(char *seq); extern char *SeqFormatString(int code); extern GSIFILE *GSIOpen(char *gsifile); extern int GSIGetOffset(GSIFILE *gsi, char *key, char *sqfile, long *ret_offset); extern void GSIClose(GSIFILE *gsi); /* from sre_ctype.c */ extern int sre_tolower(int c); extern int sre_toupper(int c); /* from sre_math.c */ extern float Gaussrandom(float mean, float stddev); extern int Linefit(float *x, float *y, int N, float *ret_a, float *ret_b, float *ret_r); extern float Gammln(float xx); extern int DNorm(double *vec, int n); extern int FNorm(float *vec, int n); extern void DScale(double *vec, int n, double scale); extern void FScale(float *vec, int n, float scale); extern void DSet(double *vec, int n, double value); extern void FSet(float *vec, int n, float value); extern double DSum(double *vec, int n); extern float FSum(float *vec, int n); extern float sre_random(void); extern void sre_srandom(int seed); extern int DChoose(double *p, int n); extern int FChoose(float *p, int n); extern double DLogSum(double *logp, int n); extern float FLogSum(float *logp, int n); /* from sre_string.c */ #ifdef NOSTR extern char *strstr(char *s, char *subs); #endif extern char *Strdup(char *s); extern int Strinsert(char *s1, char c, int pos); extern int Strdelete(char *s1, int pos); extern void s2lower(char *s); extern void s2upper(char *s); extern void *MallocOrDie(size_t size); extern void *ReallocOrDie(void *p, size_t size); extern int Strparse(char *rexp, char *s, char **buf, int ntok, ...); extern void StrShuffle(char *s1, char *s2); /* from stack.c */ extern struct intstack_s *InitIntStack(void); extern void PushIntStack(struct intstack_s *stack, int data); extern int PopIntStack(struct intstack_s *stack, int *ret_data); extern void ReverseIntStack(struct intstack_s *stack); extern int FreeIntStack( struct intstack_s *stack ); /* * from translate.c */ extern char *Translate(char *seq, char **code); /* * from types.c */ extern int IsInt(char *s); extern int IsReal(char *s); /* * from weight.c */ extern int SonnhammerWeights(char **aseq, int nseq, int alen, float **ret_weights); extern int VoronoiWeights(char **aseq, int nseq, int alen, float **ret_weights); extern void FilterAlignment(char **aseq, int nseq, AINFO *ainfo, float cutoff, char ***ret_anew, int *ret_nnew, AINFO **ret_newinfo); extern void SampleAlignment(char **aseq, int nseq, AINFO *ainfo, int sample, char ***ret_anew, int *ret_nnew, AINFO **ret_newinfo); #endif /* SQFUNCSH_INCLUDED */ tRNAscan-SE-2.0/src/fasta2gsi.in0000644000543100007160000000550313100451015015625 0ustar pchanlowelab#! @PERL@ # Usage: fasta2gsi # Creates seqfile.gsi # # Create a .gsi sequence database index file. # # GSI allows multiple files per index, but fasta2gsi.pl # creates a GSI index for a single FASTA file. # # Part of the SQUID sequence analysis library. # Copyright (C) 1992-1996 Sean R. Eddy $seqfile = shift; $gsifile = $seqfile.".gsi"; $tmpfile = $seqfile.".tmpgsi"; # Library of Perl functions for creating GSI index files. # # GSI definition: # 1 + + total records. # Each record = 38 bytes. # # one header record : <"GSI" (32)> # file records : # key records : # # Part of the SQUID sequence analysis library. # Copyright (C) 1992-1996 Sean R. Eddy # The following numbers MUST match their counterparts in squid.h # $sqd_fmt_genbank = 2; $sqd_fmt_embl = 4; $sqd_fmt_fasta = 7; $sqd_fmt_pir = 12; # Function: GSI_WriteHeader(GSIFILE, $filenum, $keynum) # # Write the header of an open GSI file. # sub GSI_WriteHeader { local(*GSIFILE, $filenum, $keynum) = @_; local($header); $header = pack("a32 n N", "GSI", $filenum, $keynum); print GSIFILE $header; 1; } # Function: GSI_WriteFileRecord(GSIFILE, $filename, $idx, $fmt) # # Write a file record to an open GSI file. # sub GSI_WriteFileRecord { local(*GSIFILE, $filename, $idx, $fmt) = @_; local($record); $record = pack("a32 n N", $filename, $idx, $fmt); print GSIFILE $record; 1; } # Function: GSI_WriteKeyRecord(GSIFILE, $key, $filenum, $offset) # # Write a key record to an open GSI file. # sub GSI_WriteKeyRecord { local(*GSIFILE, $key, $filenum, $offset) = @_; local($record); $record = pack("a32 n N", $key, $filenum, $offset); print GSIFILE $record; 1; } # First pass. Create an unsorted flat text file. # $curr_offset = 0; $recnum = 0; print "Calculating offsets for $seqfile...\n"; open(TMPFILE,">$tmpfile"); open(SEQFILE,$seqfile); while () { if (($key) = /^>\s*(\S+)/) { print TMPFILE "$key 1 $curr_offset\n"; $recnum++; } $curr_offset = tell; } close(SEQFILE); close(TMPFILE); # Sort the temporary file alphabetically on the key. print "Sorting the intermediate index file...\n"; system("sort -o $tmpfile $tmpfile"); # Second pass. Convert flat text file to binary GSI. # print "Writing the final binary GSI file...\n"; open(GSIFILE,">$gsifile"); &GSI_WriteHeader(GSIFILE, 1, $recnum); &GSI_WriteFileRecord(GSIFILE, $seqfile, 1, $sqd_fmt_fasta); open(TMPFILE,$tmpfile); while () { ($key, $filenum, $offset) = split; &GSI_WriteKeyRecord(GSIFILE, $key, $filenum, $offset); } close(TMPFILE); close(GSIFILE); unlink $tmpfile; print "Complete.\n"; print "$gsifile indexes $recnum sequence names.\n"; tRNAscan-SE-2.0/src/gnuregex.h0000644000543100007160000004426511021467306015431 0ustar pchanlowelab/* Definitions for data structures and routines for the regular expression library, version 0.12. Copyright (C) 1985,1989,1990,1991,1992,1993 Free Software Foundation, Inc. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. */ #ifndef __REGEXP_LIBRARY_H__ #define __REGEXP_LIBRARY_H__ /* POSIX says that must be included (by the caller) before . */ #ifdef VMS /* VMS doesn't have `size_t' in , even though POSIX says it should be there. */ #include #endif /* The following bits are used to determine the regexp syntax we recognize. The set/not-set meanings are chosen so that Emacs syntax remains the value 0. The bits are given in alphabetical order, and the definitions shifted by one from the previous bit; thus, when we add or remove a bit, only one other definition need change. */ typedef unsigned reg_syntax_t; /* If this bit is not set, then \ inside a bracket expression is literal. If set, then such a \ quotes the following character. */ #define RE_BACKSLASH_ESCAPE_IN_LISTS (1) /* If this bit is not set, then + and ? are operators, and \+ and \? are literals. If set, then \+ and \? are operators and + and ? are literals. */ #define RE_BK_PLUS_QM (RE_BACKSLASH_ESCAPE_IN_LISTS << 1) /* If this bit is set, then character classes are supported. They are: [:alpha:], [:upper:], [:lower:], [:digit:], [:alnum:], [:xdigit:], [:space:], [:print:], [:punct:], [:graph:], and [:cntrl:]. If not set, then character classes are not supported. */ #define RE_CHAR_CLASSES (RE_BK_PLUS_QM << 1) /* If this bit is set, then ^ and $ are always anchors (outside bracket expressions, of course). If this bit is not set, then it depends: ^ is an anchor if it is at the beginning of a regular expression or after an open-group or an alternation operator; $ is an anchor if it is at the end of a regular expression, or before a close-group or an alternation operator. This bit could be (re)combined with RE_CONTEXT_INDEP_OPS, because POSIX draft 11.2 says that * etc. in leading positions is undefined. We already implemented a previous draft which made those constructs invalid, though, so we haven't changed the code back. */ #define RE_CONTEXT_INDEP_ANCHORS (RE_CHAR_CLASSES << 1) /* If this bit is set, then special characters are always special regardless of where they are in the pattern. If this bit is not set, then special characters are special only in some contexts; otherwise they are ordinary. Specifically, * + ? and intervals are only special when not after the beginning, open-group, or alternation operator. */ #define RE_CONTEXT_INDEP_OPS (RE_CONTEXT_INDEP_ANCHORS << 1) /* If this bit is set, then *, +, ?, and { cannot be first in an re or immediately after an alternation or begin-group operator. */ #define RE_CONTEXT_INVALID_OPS (RE_CONTEXT_INDEP_OPS << 1) /* If this bit is set, then . matches newline. If not set, then it doesn't. */ #define RE_DOT_NEWLINE (RE_CONTEXT_INVALID_OPS << 1) /* If this bit is set, then . doesn't match NUL. If not set, then it does. */ #define RE_DOT_NOT_NULL (RE_DOT_NEWLINE << 1) /* If this bit is set, nonmatching lists [^...] do not match newline. If not set, they do. */ #define RE_HAT_LISTS_NOT_NEWLINE (RE_DOT_NOT_NULL << 1) /* If this bit is set, either \{...\} or {...} defines an interval, depending on RE_NO_BK_BRACES. If not set, \{, \}, {, and } are literals. */ #define RE_INTERVALS (RE_HAT_LISTS_NOT_NEWLINE << 1) /* If this bit is set, +, ? and | aren't recognized as operators. If not set, they are. */ #define RE_LIMITED_OPS (RE_INTERVALS << 1) /* If this bit is set, newline is an alternation operator. If not set, newline is literal. */ #define RE_NEWLINE_ALT (RE_LIMITED_OPS << 1) /* If this bit is set, then `{...}' defines an interval, and \{ and \} are literals. If not set, then `\{...\}' defines an interval. */ #define RE_NO_BK_BRACES (RE_NEWLINE_ALT << 1) /* If this bit is set, (...) defines a group, and \( and \) are literals. If not set, \(...\) defines a group, and ( and ) are literals. */ #define RE_NO_BK_PARENS (RE_NO_BK_BRACES << 1) /* If this bit is set, then \ matches . If not set, then \ is a back-reference. */ #define RE_NO_BK_REFS (RE_NO_BK_PARENS << 1) /* If this bit is set, then | is an alternation operator, and \| is literal. If not set, then \| is an alternation operator, and | is literal. */ #define RE_NO_BK_VBAR (RE_NO_BK_REFS << 1) /* If this bit is set, then an ending range point collating higher than the starting range point, as in [z-a], is invalid. If not set, then when ending range point collates higher than the starting range point, the range is ignored. */ #define RE_NO_EMPTY_RANGES (RE_NO_BK_VBAR << 1) /* If this bit is set, then an unmatched ) is ordinary. If not set, then an unmatched ) is invalid. */ #define RE_UNMATCHED_RIGHT_PAREN_ORD (RE_NO_EMPTY_RANGES << 1) /* This global variable defines the particular regexp syntax to use (for some interfaces). When a regexp is compiled, the syntax used is stored in the pattern buffer, so changing this does not affect already-compiled regexps. */ extern reg_syntax_t re_syntax_options; /* Define combinations of the above bits for the standard possibilities. (The [[[ comments delimit what gets put into the Texinfo file, so don't delete them!) */ /* [[[begin syntaxes]]] */ #define RE_SYNTAX_EMACS 0 #define RE_SYNTAX_AWK \ (RE_BACKSLASH_ESCAPE_IN_LISTS | RE_DOT_NOT_NULL \ | RE_NO_BK_PARENS | RE_NO_BK_REFS \ | RE_NO_BK_VBAR | RE_NO_EMPTY_RANGES \ | RE_UNMATCHED_RIGHT_PAREN_ORD) #define RE_SYNTAX_POSIX_AWK \ (RE_SYNTAX_POSIX_EXTENDED | RE_BACKSLASH_ESCAPE_IN_LISTS) #define RE_SYNTAX_GREP \ (RE_BK_PLUS_QM | RE_CHAR_CLASSES \ | RE_HAT_LISTS_NOT_NEWLINE | RE_INTERVALS \ | RE_NEWLINE_ALT) #define RE_SYNTAX_EGREP \ (RE_CHAR_CLASSES | RE_CONTEXT_INDEP_ANCHORS \ | RE_CONTEXT_INDEP_OPS | RE_HAT_LISTS_NOT_NEWLINE \ | RE_NEWLINE_ALT | RE_NO_BK_PARENS \ | RE_NO_BK_VBAR) #define RE_SYNTAX_POSIX_EGREP \ (RE_SYNTAX_EGREP | RE_INTERVALS | RE_NO_BK_BRACES) /* P1003.2/D11.2, section 4.20.7.1, lines 5078ff. */ #define RE_SYNTAX_ED RE_SYNTAX_POSIX_BASIC #define RE_SYNTAX_SED RE_SYNTAX_POSIX_BASIC /* Syntax bits common to both basic and extended POSIX regex syntax. */ #define _RE_SYNTAX_POSIX_COMMON \ (RE_CHAR_CLASSES | RE_DOT_NEWLINE | RE_DOT_NOT_NULL \ | RE_INTERVALS | RE_NO_EMPTY_RANGES) #define RE_SYNTAX_POSIX_BASIC \ (_RE_SYNTAX_POSIX_COMMON | RE_BK_PLUS_QM) /* Differs from ..._POSIX_BASIC only in that RE_BK_PLUS_QM becomes RE_LIMITED_OPS, i.e., \? \+ \| are not recognized. Actually, this isn't minimal, since other operators, such as \`, aren't disabled. */ #define RE_SYNTAX_POSIX_MINIMAL_BASIC \ (_RE_SYNTAX_POSIX_COMMON | RE_LIMITED_OPS) #define RE_SYNTAX_POSIX_EXTENDED \ (_RE_SYNTAX_POSIX_COMMON | RE_CONTEXT_INDEP_ANCHORS \ | RE_CONTEXT_INDEP_OPS | RE_NO_BK_BRACES \ | RE_NO_BK_PARENS | RE_NO_BK_VBAR \ | RE_UNMATCHED_RIGHT_PAREN_ORD) /* Differs from ..._POSIX_EXTENDED in that RE_CONTEXT_INVALID_OPS replaces RE_CONTEXT_INDEP_OPS and RE_NO_BK_REFS is added. */ #define RE_SYNTAX_POSIX_MINIMAL_EXTENDED \ (_RE_SYNTAX_POSIX_COMMON | RE_CONTEXT_INDEP_ANCHORS \ | RE_CONTEXT_INVALID_OPS | RE_NO_BK_BRACES \ | RE_NO_BK_PARENS | RE_NO_BK_REFS \ | RE_NO_BK_VBAR | RE_UNMATCHED_RIGHT_PAREN_ORD) /* [[[end syntaxes]]] */ /* Maximum number of duplicates an interval can allow. Some systems (erroneously) define this in other header files, but we want our value, so remove any previous define. */ #ifdef RE_DUP_MAX #undef RE_DUP_MAX #endif #define RE_DUP_MAX ((1 << 15) - 1) /* POSIX `cflags' bits (i.e., information for `regcomp'). */ /* If this bit is set, then use extended regular expression syntax. If not set, then use basic regular expression syntax. */ #define REG_EXTENDED 1 /* If this bit is set, then ignore case when matching. If not set, then case is significant. */ #define REG_ICASE (REG_EXTENDED << 1) /* If this bit is set, then anchors do not match at newline characters in the string. If not set, then anchors do match at newlines. */ #define REG_NEWLINE (REG_ICASE << 1) /* If this bit is set, then report only success or fail in regexec. If not set, then returns differ between not matching and errors. */ #define REG_NOSUB (REG_NEWLINE << 1) /* POSIX `eflags' bits (i.e., information for regexec). */ /* If this bit is set, then the beginning-of-line operator doesn't match the beginning of the string (presumably because it's not the beginning of a line). If not set, then the beginning-of-line operator does match the beginning of the string. */ #define REG_NOTBOL 1 /* Like REG_NOTBOL, except for the end-of-line. */ #define REG_NOTEOL (1 << 1) /* If any error codes are removed, changed, or added, update the `re_error_msg' table in regex.c. */ typedef enum { REG_NOERROR = 0, /* Success. */ REG_NOMATCH, /* Didn't find a match (for regexec). */ /* POSIX regcomp return error codes. (In the order listed in the standard.) */ REG_BADPAT, /* Invalid pattern. */ REG_ECOLLATE, /* Not implemented. */ REG_ECTYPE, /* Invalid character class name. */ REG_EESCAPE, /* Trailing backslash. */ REG_ESUBREG, /* Invalid back reference. */ REG_EBRACK, /* Unmatched left bracket. */ REG_EPAREN, /* Parenthesis imbalance. */ REG_EBRACE, /* Unmatched \{. */ REG_BADBR, /* Invalid contents of \{\}. */ REG_ERANGE, /* Invalid range end. */ REG_ESPACE, /* Ran out of memory. */ REG_BADRPT, /* No preceding re for repetition op. */ /* Error codes we've added. */ REG_EEND, /* Premature end. */ REG_ESIZE, /* Compiled pattern bigger than 2^16 bytes. */ REG_ERPAREN /* Unmatched ) or \); not returned from regcomp. */ } reg_errcode_t; /* This data structure represents a compiled pattern. Before calling the pattern compiler, the fields `buffer', `allocated', `fastmap', `translate', and `no_sub' can be set. After the pattern has been compiled, the `re_nsub' field is available. All other fields are private to the regex routines. */ struct re_pattern_buffer { /* [[[begin pattern_buffer]]] */ /* Space that holds the compiled pattern. It is declared as `unsigned char *' because its elements are sometimes used as array indexes. */ unsigned char *buffer; /* Number of bytes to which `buffer' points. */ unsigned long allocated; /* Number of bytes actually used in `buffer'. */ unsigned long used; /* Syntax setting with which the pattern was compiled. */ reg_syntax_t syntax; /* Pointer to a fastmap, if any, otherwise zero. re_search uses the fastmap, if there is one, to skip over impossible starting points for matches. */ char *fastmap; /* Either a translate table to apply to all characters before comparing them, or zero for no translation. The translation is applied to a pattern when it is compiled and to a string when it is matched. */ char *translate; /* Number of subexpressions found by the compiler. */ size_t re_nsub; /* Zero if this pattern cannot match the empty string, one else. Well, in truth it's used only in `re_search_2', to see whether or not we should use the fastmap, so we don't set this absolutely perfectly; see `re_compile_fastmap' (the `duplicate' case). */ unsigned can_be_null : 1; /* If REGS_UNALLOCATED, allocate space in the `regs' structure for `max (RE_NREGS, re_nsub + 1)' groups. If REGS_REALLOCATE, reallocate space if necessary. If REGS_FIXED, use what's there. */ #define REGS_UNALLOCATED 0 #define REGS_REALLOCATE 1 #define REGS_FIXED 2 unsigned regs_allocated : 2; /* Set to zero when `regex_compile' compiles a pattern; set to one by `re_compile_fastmap' if it updates the fastmap. */ unsigned fastmap_accurate : 1; /* If set, `re_match_2' does not return information about subexpressions. */ unsigned no_sub : 1; /* If set, a beginning-of-line anchor doesn't match at the beginning of the string. */ unsigned not_bol : 1; /* Similarly for an end-of-line anchor. */ unsigned not_eol : 1; /* If true, an anchor at a newline matches. */ unsigned newline_anchor : 1; /* [[[end pattern_buffer]]] */ }; typedef struct re_pattern_buffer regex_t; /* search.c (search_buffer) in Emacs needs this one opcode value. It is defined both in `regex.c' and here. */ #define RE_EXACTN_VALUE 1 /* Type for byte offsets within the string. POSIX mandates this. */ typedef int regoff_t; /* This is the structure we store register match data in. See regex.texinfo for a full description of what registers match. */ struct re_registers { unsigned num_regs; regoff_t *start; regoff_t *end; }; /* If `regs_allocated' is REGS_UNALLOCATED in the pattern buffer, `re_match_2' returns information about at least this many registers the first time a `regs' structure is passed. */ #ifndef RE_NREGS #define RE_NREGS 30 #endif /* POSIX specification for registers. Aside from the different names than `re_registers', POSIX uses an array of structures, instead of a structure of arrays. */ typedef struct { regoff_t rm_so; /* Byte offset from string's start to substring's start. */ regoff_t rm_eo; /* Byte offset from string's start to substring's end. */ } regmatch_t; /* Declarations for routines. */ /* To avoid duplicating every routine declaration -- once with a prototype (if we are ANSI), and once without (if we aren't) -- we use the following macro to declare argument types. This unfortunately clutters up the declarations a bit, but I think it's worth it. */ #if __STDC__ #define _RE_ARGS(args) args #else /* not __STDC__ */ #define _RE_ARGS(args) () #endif /* not __STDC__ */ /* Sets the current default syntax to SYNTAX, and return the old syntax. You can also simply assign to the `re_syntax_options' variable. */ extern reg_syntax_t re_set_syntax _RE_ARGS ((reg_syntax_t syntax)); /* Compile the regular expression PATTERN, with length LENGTH and syntax given by the global `re_syntax_options', into the buffer BUFFER. Return NULL if successful, and an error string if not. */ extern char *re_compile_pattern _RE_ARGS ((char *pattern, int length, struct re_pattern_buffer *buffer)); /* Compile a fastmap for the compiled pattern in BUFFER; used to accelerate searches. Return 0 if successful and -2 if was an internal error. */ extern int re_compile_fastmap _RE_ARGS ((struct re_pattern_buffer *buffer)); /* Search in the string STRING (with length LENGTH) for the pattern compiled into BUFFER. Start searching at position START, for RANGE characters. Return the starting position of the match, -1 for no match, or -2 for an internal error. Also return register information in REGS (if REGS and BUFFER->no_sub are nonzero). */ extern int re_search _RE_ARGS ((struct re_pattern_buffer *buffer, char *string, int length, int start, int range, struct re_registers *regs)); /* Like `re_search', but search in the concatenation of STRING1 and STRING2. Also, stop searching at index START + STOP. */ extern int re_search_2 _RE_ARGS ((struct re_pattern_buffer *buffer, char *string1, int length1, char *string2, int length2, int start, int range, struct re_registers *regs, int stop)); /* Like `re_search', but return how many characters in STRING the regexp in BUFFER matched, starting at position START. */ extern int re_match _RE_ARGS ((struct re_pattern_buffer *buffer, char *string, int length, int start, struct re_registers *regs)); /* Relates to `re_match' as `re_search_2' relates to `re_search'. */ extern int re_match_2 _RE_ARGS ((struct re_pattern_buffer *buffer, char *string1, int length1, char *string2, int length2, int start, struct re_registers *regs, int stop)); /* Set REGS to hold NUM_REGS registers, storing them in STARTS and ENDS. Subsequent matches using BUFFER and REGS will use this memory for recording register information. STARTS and ENDS must be allocated with malloc, and must each be at least `NUM_REGS * sizeof (regoff_t)' bytes long. If NUM_REGS == 0, then subsequent matches should allocate their own register data. Unless this function is called, the first search or match using PATTERN_BUFFER will allocate its own register data, without freeing the old data. */ extern void re_set_registers _RE_ARGS ((struct re_pattern_buffer *buffer, struct re_registers *regs, unsigned num_regs, regoff_t *starts, regoff_t *ends)); /* 4.2 bsd compatibility. */ extern char *re_comp _RE_ARGS ((char *)); extern int re_exec _RE_ARGS ((char *)); /* POSIX compatibility. */ extern int regcomp _RE_ARGS ((regex_t *preg, char *pattern, int cflags)); extern int regexec _RE_ARGS ((regex_t *preg, char *string, size_t nmatch, regmatch_t pmatch[], int eflags)); extern size_t regerror _RE_ARGS ((int errcode, regex_t *preg, char *errbuf, size_t errbuf_size)); extern void regfree _RE_ARGS ((regex_t *preg)); #endif /* not __REGEXP_LIBRARY_H__ */ /* Local variables: make-backup-files: t version-control: t trim-versions-without-asking: nil End: */ tRNAscan-SE-2.0/src/build_main.c0000644000543100007160000002771711021467304015704 0ustar pchanlowelab/* build_main.c * SRE, Mon Sep 6 09:18:35 1993 * * coveb - construct a covariance model from aligned sequences */ #include #include #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "squid.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "ap:g:ho:P:" static void mtr2rf(struct trace_s *mtr, int alen, char **ret_rf); static char usage[] = "\ Usage: coveb [-options] \n\ where options are:\n\ -a : annotate all pairs, not just canonical Watson-Crick\n\ -g : -P1 or -P2 only - columns above this fractional gap \n\ occurrence are assigned to INS (default 0.7)\n\ -h : print out short help info\n\ -o : save structure-annotated alignment to \n\ -p : use prior probability info from \n\ Construction plans:\n\ (default) : Maximum likelihood (slow)\n\ -P1 : fast heuristic (MIXY based)\n\ -P2 : use specified consensus structure (CS line)\n\ -P3 : use both specified consensus and reference info\n"; static char banner[] = "coveb: construct covariance model from aligned sequences"; int main(int argc, char **argv) { char **aseqs; /* training sequences */ AINFO ainfo; /* misc. associated alignment info */ int nseq; /* number of seqs */ char *seqfile; /* sequence file */ int format; /* format of sequence file */ char *cmfile; /* OUTPUT: saved cm */ FILE *cmfp; /* OUTPUT: fp to cmfile */ struct cm_s *cm; /* model */ struct prior_s *prior; /* prior prob. distributions */ int idx; /* index for sequences */ double secinfo; /* secondary structure info content */ struct trace_s *mtr; /* master traceback for alignment */ struct trace_s *tr; /* a traceback for indiv seq */ struct trmem_s *pool; /* memory pool for traceback */ char **ss; /* secondary structures */ double worstscore; double bestscore; double sqsum; double tot_score; double score; int leftcount, rightcount; int apos; enum plan_e { PLAN_ML, PLAN_MIXY, PLAN_CS, PLAN_CSRF } plan; char *prifile; /* file to get prior from */ FILE *prifp; /* open priorfile */ char *structfile; /* file to save structure-annotation to */ FILE *structfp; /* open structfile */ double gapthresh; /* heuristic INS assignment parameter */ int watsoncrick; /* TRUE to annotate canonical pairs only */ int optc; /* for getopt() */ extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ #ifdef MEMDEBUG /* for Cahill's dbmalloc */ unsigned long histid1, histid2, orig_size, current_size; #endif /*********************************************** * Parse command line ***********************************************/ prifile = NULL; /* forces use of default prior in prior.h */ gapthresh = .70; structfile = NULL; watsoncrick = TRUE; plan = PLAN_ML; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'a': watsoncrick = FALSE; break; case 'g': gapthresh = atof(optarg); break; case 'o': structfile = optarg; break; case 'p': prifile = optarg; break; case 'P': switch (*optarg) { case '1': plan = PLAN_MIXY; break; case '2': plan = PLAN_CS; break; case '3': plan = PLAN_CSRF; break; default: Die("No such construction plan.\n%s", usage); } break; case 'h': printf("%s\n version %s (%s)\n%s", banner, RELEASE, RELEASEDATE, usage); exit(0); default: Die("Error: unrecognized option %c\n", optc); } if (argc - optind != 2) Die("Wrong number of command line arguments.\n%s\n", usage); cmfile = argv[argc-2]; seqfile = argv[argc-1]; #ifdef MEMDEBUG orig_size = malloc_size(&histid1); #endif /*********************************************** * Get sequence data and prior ***********************************************/ if (! SeqfileFormat(seqfile, &format, NULL)) Die("Can't determine format of file %s", seqfile); /* read the training seqs from file */ if (! ReadAlignment(seqfile, format, &aseqs, &nseq, &ainfo)) Die("Failed to read aligned sequence file %s", seqfile); /* convert seq to all upper case */ for (idx = 0; idx < nseq; idx++) s2upper(aseqs[idx]); if (prifile == NULL) { if (! DefaultPrior(&prior)) Die("Failed to copy prior probability distribution information"); } else { if ((prifp = fopen(prifile, "r")) == NULL) Die("Failed to open prior probability info file %s", prifile); if (! ReadPrior(prifp, &prior)) Die("Failed to read prior probability info file %s", prifile); fclose(prifp); } /*********************************************** * Print banner ***********************************************/ puts(banner); printf(" release %s, %s\n\n", RELEASE, RELEASEDATE); printf("---------------------------------------------------\n"); printf("Training alignment: %s (%d sequences)\n", seqfile, nseq); printf("Prior distributions: "); if (prifile == NULL) printf("default (plus-one, Laplace)\n"); else printf("from file %s\n", prifile); printf("Construction plan: "); switch (plan) { case PLAN_ML: printf("maximum likelihood\n"); break; case PLAN_MIXY: printf("fast (MIXY-based) heuristic\n"); break; case PLAN_CS: printf("specified consensus structure\n"); break; case PLAN_CSRF: printf("specified structure and match columns\n"); break; } if (plan == PLAN_MIXY || plan == PLAN_CS) printf("INS if gap freq >: %.2f\n", gapthresh); printf("---------------------------------------------------\n"); /*********************************************** * Create the starting model ***********************************************/ #ifdef MEMDEBUG printf("Checking malloc chain "); malloc_chain_check(0); printf("... done.\n"); #endif switch (plan) { case PLAN_ML: if (! Maxmodelmaker(aseqs, &ainfo, nseq, -1, prior, &secinfo, &cm, &mtr)) Die("Maxmodelmaker failed to create starting model from alignment"); break; case PLAN_MIXY: if (! Fastmodelmaker(aseqs, &ainfo, nseq, prior, gapthresh, &secinfo, &cm, &mtr)) Die("Fastmodelmaker failed to create starting model from alignment"); break; case PLAN_CS: EasyModelmaker(aseqs, &ainfo, nseq, prior, gapthresh, FALSE, &cm, &mtr); break; case PLAN_CSRF: EasyModelmaker(aseqs, &ainfo, nseq, prior, gapthresh, TRUE, &cm, &mtr); break; default: Die("That must be a secret plan, pal, because I've never heard of it."); } if (! VerifyCM(cm)) Die("Bad covariance model. Bad, bad covariance model...\n"); /* Use master traceback to reconstruct individual traces. * Use individual traces to a) find individual secondary structures * b) calculate avg, high, low scores * Some duplication of effort here, because the modelmakers * already had to construct tracebacks and threw them away. */ if ((ss = (char **) malloc (sizeof(char *) * nseq)) == NULL) Die("malloc failed"); worstscore = HUGE_VAL; bestscore = -HUGE_VAL; tot_score = sqsum = 0.0; for (idx = 0; idx < nseq; idx++) { Transmogrify(mtr, aseqs[idx], &tr, &pool); score = TraceScore(cm, aseqs[idx], tr); tot_score += score; sqsum += score * score; if (score > bestscore) bestscore = score; if (score < worstscore) worstscore = score; if (ainfo.sqinfo[idx].flags & SQINFO_SS) free(ainfo.sqinfo[idx].ss); Trace2KHS(tr, aseqs[idx], ainfo.alen, watsoncrick, &(ss[idx])); MakeDealignedString(aseqs[idx], ainfo.alen, ss[idx], &(ainfo.sqinfo[idx].ss)); ainfo.sqinfo[idx].flags |= SQINFO_SS; FreeTrace(tr, pool); } /* Construct a consensus structure string and reference * line as annotation. * Secondary structure strings, ss, are currently aligned to * the aseqs. Calculate an aligned consensus structure from * them. */ if (plan == PLAN_MIXY || plan == PLAN_ML) { if (ainfo.flags & AINFO_CS) free(ainfo.cs); if ((ainfo.cs = (char *) malloc (sizeof(char) * (ainfo.alen+1))) == NULL) Die("malloc failed"); for (apos = 0; apos < ainfo.alen; apos++) { leftcount = rightcount = 0; for (idx = 0; idx < nseq; idx++) if (ss[idx][apos] == '<') rightcount++; else if (ss[idx][apos] == '>') leftcount++; if (rightcount >= nseq / 2) ainfo.cs[apos] = '<'; else if (leftcount >= nseq / 2) ainfo.cs[apos] = '>'; else ainfo.cs[apos] = '.'; } ainfo.cs[ainfo.alen] = '\0'; ainfo.flags |= AINFO_CS; } /* Construct a reference line to indicate which columns were assigned * as match states. */ if (plan != PLAN_CSRF) { if (ainfo.flags & AINFO_RF) free(ainfo.rf); mtr2rf(mtr, ainfo.alen, &(ainfo.rf)); ainfo.flags |= AINFO_RF; } if ((cmfp = fopen(cmfile, "w")) == NULL) Die("Failed to open %s for writing", cmfile); if (! WriteCM(cmfp, cm)) Die("Failed to save the model to %s", cmfile); fclose(cmfp); if (structfile != NULL) { if ((structfp = fopen(structfile, "w")) == NULL) Die("Failed to open structure annotation alignment file %s", structfile); if (! WriteSELEX(structfp, aseqs, nseq, &ainfo, 60)) Die("Failed to write annotated alignment to %s", structfile); fclose(structfp); printf("Structure annotated alignment file written to %s\n", structfile); } printf("Constructed a covariance model (%d nodes)\n", cm->nodes); printf("Average score: %10.2f bits\n", tot_score / (double) nseq); printf("Minimum score: %10.2f bits\n", worstscore); printf("Maximum score: %10.2f bits\n", bestscore); printf("Std. deviation: %10.2f bits\n", sqrt((sqsum - (tot_score * tot_score / (double) nseq)) / ((double) nseq - 1.0))); printf("\nCM written to file %s\n", cmfile); FreeCM(cm); FreeTrace(mtr, NULL); free(prior); FreeAlignment(aseqs, nseq, &ainfo); Free2DArray(ss, nseq); #ifdef MEMDEBUG current_size = malloc_size(&histid2); if (current_size != orig_size) malloc_list(2, histid1, histid2); else fprintf(stderr, "No memory leaks, sir.\n"); #endif return 0; } /* Function: mtr2rf() * * Purpose: Make an #=RF line from a master traceback, to indicate * which columns were used as match columns in building * a model. Keep in mind that master traces use node type * indices, rather than state type indices like traces * are supposed to. */ static void mtr2rf(struct trace_s *mtr, int alen, char **ret_rf) { struct tracestack_s *dolist; struct trace_s *curr; char *rf; rf = (char *) MallocOrDie(sizeof(char) * (alen+1)); memset(rf, ' ', alen); rf[alen] = '\0'; dolist = InitTracestack(); PushTracestack(dolist, mtr->nxtl); while ((curr = PopTracestack(dolist)) != NULL) { if ( curr->type == MATP_NODE ) rf[curr->emitl] = rf[curr->emitr] = '.'; else if ( curr->type == MATL_NODE ) rf[curr->emitl] = '.'; else if ( curr->type == MATR_NODE ) rf[curr->emitr] = '.'; if (curr->nxtr) PushTracestack(dolist, curr->nxtr); if (curr->nxtl) PushTracestack(dolist, curr->nxtl); } FreeTracestack(dolist); *ret_rf = rf; } tRNAscan-SE-2.0/src/seqstat_main.c0000644000543100007160000000676411021467311016266 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* seqstat_main.c * Wed Aug 10 15:47:14 1994 * * Look at a sequence file, determine some simple statistics. */ #include #include #include "squid.h" #define OPTIONS "ah" #ifdef MEMDEBUG #include "dbmalloc.h" #endif char usage[] = "Usage: seqstat [-options] \n\ Verify a sequence file; print some simple statistics and info.\n\ Available options:\n\ -a : report per-sequence info, not just a summary\n\ -h : help; display usage and version\n"; int main(int argc, char **argv) { char *seqfile; /* name of sequence file */ SQFILE *dbfp; /* open sequence file */ int fmt; /* format of seqfile */ char *seq; /* sequence */ SQINFO sqinfo; /* extra info about sequence */ int nseqs; int small; /* smallest length */ int large; /* largest length */ int total; /* total length */ int optchar; /* option character, command line */ extern int optind; int allreport; #ifdef MEMDEBUG unsigned long histid1, histid2, orig_size, current_size; #endif /*********************************************** * Parse command line ***********************************************/ allreport = FALSE; /* default: summary only */ while ((optchar = getopt(argc, argv, OPTIONS)) != -1) switch (optchar) { case 'a': allreport = TRUE; break; case 'h': printf("seqstat %s, %s\n%s\n", squid_version, squid_date, usage); exit(EXIT_SUCCESS); default: Die("%s\n", usage); } if (argc - optind != 1) Die("%s\n", usage); seqfile = argv[argc-1]; #ifdef MEMDEBUG orig_size = malloc_size(&histid1); #endif /*********************************************** * Read the file. ***********************************************/ printf("seqstat %s, %s\n\n", squid_version, squid_date); if (! SeqfileFormat(seqfile, &fmt, NULL)) Die("Can't determine format of file %s\n", seqfile); if ((dbfp = SeqfileOpen(seqfile, fmt, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); if (allreport) { printf(" %-15s %-5s %s\n", " NAME", "LEN", "DESCRIPTION"); printf(" --------------- ----- -----------\n"); } small = 9999999; large = 0; nseqs = 0; total = 0; while (ReadSeq(dbfp, fmt, &seq, &sqinfo)) { if (allreport) printf("* %-15s %5d %-50.50s\n", sqinfo.name, sqinfo.len, sqinfo.flags & SQINFO_DESC ? sqinfo.desc : ""); if (sqinfo.len < small) small = sqinfo.len; if (sqinfo.len > large) large = sqinfo.len; total += sqinfo.len; nseqs++; FreeSequence(seq, &sqinfo); } if (allreport) puts(""); printf("Format: %s\n", SeqFormatString(fmt)); printf("Number of sequences: %d\n", nseqs); printf("Total # residues: %d\n", total); printf("Smallest: %d\n", small); printf("Largest: %d\n", large); printf("Average length: %.1f\n", (float) total / (float) nseqs); SeqfileClose(dbfp); #ifdef MEMDEBUG current_size = malloc_size(&histid2); if (current_size != orig_size) malloc_list(2, histid1, histid2); else fprintf(stderr, "[No memory leaks]\n"); #endif return 0; } tRNAscan-SE-2.0/src/structcheck_main.c0000644000543100007160000003023511021467306017116 0ustar pchanlowelab/* structcheck_main.c * SRE, Mon Dec 20 07:48:07 1993 * * Check a set of individual RNA structures for non-Watson-Crick * or GU base pairs. Keep statistics on the number of such "errors" found * overall and per sequence. Convert the offending base pairs to "*" * characters in the structure string and print out the structures * and sequences. */ #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "squid.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "hmo:psu" static char usage[] = "\ Usage: structcheck [-options] \n\ where options are:\n\ -h : print short help and usage info\n\ -m : only check for more possible base pairs\n\ -o : save flagged structure annotation alignment to \n\ -p : only check for non-Watson-Crick pair assignments\n\ -s : only check for agreement with consensus structure\n\ -u : only check for upper-case structured positions\n"; static char banner[] = "structcheck: check RNA secondary structures, flag questionables"; extern int VerifyKHS(char *ss); int main(int argc, char **argv) { char **aseqs; /* RNA sequences */ AINFO ainfo; /* misc. associated alignment info */ int nseq; /* number of seqs */ char *seqfile; /* sequence file */ int idx; /* index for sequences */ int pos; /* position index in a seq */ int *ct; /* CT0 representation of a structure */ int badseq; /* number of bad structures */ int badpairs; /* total bad base pairs */ int pairs; /* total base pairs */ int is_bad_seq; int structure_agrees; /* TRUE if consensus and secondary structure are same */ int nonconsensus; /* count seqs w/ differing cons/indiv ss assignments */ int noncons_positions; /* count of pos w/ differing cons/indiv ss assignments */ int npos; /* number of non-gap positions */ int has_morepairs; /* TRUE if more base pairs are possible than indicated in ss */ int morepairs; /* how many more pairs should've been made in alignment */ int morepair_seqs; /* how many seqs should've had more pairs made in them */ int badupper_seqs; int badupper_bases; int has_badupper; char *ss; /* aligned secondary structure string */ char *outfile; /* save flagged annotated alignment to */ FILE *ofp; /* open outfile for writing */ int check_pairs; /* if TRUE, check that pairs are complementary */ int check_consensus; /* if TRUE, compare indiv structs against consensus */ int check_morepairs; /* if TRUE, check for more obvious base-pairing in ss */ int check_isupper; /* if TRUE, check structured pos's are upper, single-s is lower */ int optc; /* for getopt() */ extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ #ifdef MEMDEBUG /* for Cahill's dbmalloc */ unsigned long histid1, histid2, orig_size, current_size; #endif /*********************************************** * Parse command line ***********************************************/ outfile = NULL; check_pairs = FALSE; check_consensus = FALSE; check_morepairs = FALSE; check_isupper = FALSE; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'o': outfile = optarg; break; case 'm': check_morepairs = TRUE; break; case 'p': check_pairs = TRUE; break; case 's': check_consensus = TRUE; break; case 'u': check_isupper = TRUE; break; case 'h': printf("%s\n version %s (%s)\n%s", banner, RELEASE, RELEASEDATE, usage); exit(0); default: Die("%s", usage); } /* Default behaviour if we're not doing a single thing */ if (! check_morepairs && ! check_pairs && ! check_consensus && ! check_isupper) { check_morepairs = TRUE; check_pairs = TRUE; check_consensus = TRUE; check_isupper = FALSE; /* did this only for SRP-RNA alignment */ } if (argc - optind != 1) Die("Wrong number of command line arguments.\n%s\n", usage); seqfile = argv[argc-1]; #ifdef MEMDEBUG orig_size = malloc_size(&histid1); #endif /*********************************************** * Get sequence data ***********************************************/ /* read the training seqs from file */ if (! ReadSELEX(seqfile, &aseqs, &nseq, &ainfo)) Die("Failed to read aligned sequence file %s", seqfile); for (idx = 0; idx < nseq; idx++) if (ainfo.sqinfo[idx].flags & SQINFO_SS) break; if (idx == nseq) Die("No secondary structure info in sequence file %s", seqfile); if ( check_consensus == TRUE && !(ainfo.flags & AINFO_CS)) { check_consensus = FALSE; Warn("No consensus structure in %s; can't check against it", seqfile); } /*********************************************** * Print banner ***********************************************/ puts(banner); printf(" release %s, %s\n", RELEASE, RELEASEDATE); printf("---------------------------------------------------\n"); puts(""); badpairs = pairs = badseq = 0; nonconsensus = npos = noncons_positions = 0; morepairs = morepair_seqs = 0; badupper_seqs = badupper_bases = 0; for (idx = 0; idx < nseq; idx++) { if (! (ainfo.sqinfo[idx].flags & SQINFO_SS)) continue; /* Make an aligned secondary structure string for our tests */ MakeAlignedString(aseqs[idx], ainfo.alen, ainfo.sqinfo[idx].ss, &ss); /* Get a ct structure to do the other tests */ if (! KHS2ct(ss, ainfo.sqinfo[idx].len, FALSE, &ct)) { printf("sequence %-10.10s (#%d) has an improper secondary structure\n", ainfo.sqinfo[idx].name, idx); free(ct); ct = NULL; VerifyKHS(ss); } /* Check if structured positions are upper-case and unstructured * positions are not. I used this for checking the SRP-RNA alignment * of Larsen and Zwieb, and it may come in handy later too. */ if (check_isupper) { has_badupper = FALSE; for (pos = 0; pos < ainfo.alen; pos++) { if (isgap(aseqs[idx][pos])) continue; if ( (ss[pos] == '.' && ! islower(aseqs[idx][pos])) || (ss[pos] != '.' && ! isupper(aseqs[idx][pos])) ) { has_badupper = TRUE; badupper_bases++; ss[pos] = '*'; } } if (has_badupper) badupper_seqs++; } /* Test for non-Watson-Crick base pairs */ if (check_pairs && ct != NULL) { is_bad_seq = False; for (pos = 0; pos < ainfo.alen; pos++) /* second test makes sure we only look at * each bp once */ if (ct[pos] != -1 && pos < ct[pos]) { pairs++; if (! IsRNAComplement(aseqs[idx][pos], aseqs[idx][ct[pos]], TRUE)) { ss[pos] = ss[ct[pos]] = '*'; is_bad_seq = True; badpairs++; } } if (is_bad_seq) badseq++; } /* Test for disagreement with consensus structure */ if (check_consensus) { structure_agrees = True; for (pos = 0; pos < ainfo.alen; pos++) { if (isgap(aseqs[idx][pos])) continue; npos++; if (ss[pos] != ainfo.cs[pos] ) { structure_agrees = False; ss[pos] = '*'; noncons_positions++; } } if (! structure_agrees) nonconsensus++; } /* Test for whether more pairs are obviously possible in the structure. * *Very* crude. For each base pair i,j, if (i-1,j+1) or * (i+1,j-1) are unpaired but complementary, flag them. This is *not* * a full-blown structure optimization algorithm (such a thing * is possible, but would require dynamic programming), but it should * flag most suspicious spots. */ if (check_morepairs && ct != NULL) { has_morepairs = FALSE; for (pos = 0; pos < ainfo.alen; pos++) /* second test makes sure we only look at * each bp once */ if (ct[pos] != -1 && pos < ct[pos]) { /* check i-1,j+1 pair; careful of ends */ if (pos > 0 && ct[pos] < ainfo.alen && ct[pos-1] == -1 && ct[ct[pos]+1] == -1 && IsRNAComplement(aseqs[idx][pos-1], aseqs[idx][ct[pos]+1], TRUE)) { has_morepairs = TRUE; morepairs++; ss[pos-1] = ss[ct[pos]+1] = '*'; } /* check i+1,j-1 pair; don't need to worry about ends */ if (ct[pos+1] == -1 && ct[ct[pos]-1] == -1 && IsRNAComplement(aseqs[idx][pos+1], aseqs[idx][ct[pos]-1], TRUE)) { has_morepairs = TRUE; morepairs++; ss[pos+1] = ss[ct[pos]-1] = '*'; } } if (has_morepairs) morepair_seqs++; } free(ct); /* Convert aligned ss back to dealigned ss */ free(ainfo.sqinfo[idx].ss); MakeDealignedString(aseqs[idx], ainfo.alen, ss, &(ainfo.sqinfo[idx].ss)); free(ss); } if (outfile == NULL) { if (! WriteSELEX(stdout, aseqs, nseq, &ainfo, 60)) Die("Failed to write alignment to stdout"); } else { if ((ofp = fopen(outfile, "w")) == NULL) Die("Failed to open flagged annotated alignment file %s", outfile); if (! WriteSELEX(ofp, aseqs, nseq, &ainfo, 60)) Die("Failed to write alignment to %s", outfile); fclose(ofp); printf("Wrote flagged annotated alignment file to %s\n", outfile); } if (check_pairs) { printf("\nComplementarity check:\n"); printf("%d/%d structures contain non-Watson-Crick, non-GU pairs\n", badseq, nseq); printf("%d/%d base pairs are questionable\n", badpairs, pairs); } if (check_consensus) { printf("\nConsensus structure check:\n"); printf("%d/%d structures disagree with consensus\n", nonconsensus, nseq); printf("%d/%d non-gap sequence positions disagree\n", noncons_positions, npos); } if (check_morepairs) { printf("\nAdditional structure check:\n"); printf("%d/%d structures have obvious additional pairings\n", morepair_seqs, nseq); printf("%d additional base pairs are predicted\n", morepairs); } if (check_isupper) { printf("\nCheck that structured positions are upper case:\n"); printf("%d/%d structures have conflicts\n", badupper_seqs, nseq); printf("%d conflicts are detected\n", badupper_bases); } FreeAlignment(aseqs, nseq, &ainfo); #ifdef MEMDEBUG current_size = malloc_size(&histid2); if (current_size != orig_size) malloc_list(2, histid1, histid2); else fprintf(stderr, "No memory leaks, sir.\n"); #endif return 0; } /* Function: VerifyKHS() * * Purpose: Examine a bad structure string and print out diagnostics * about it. * * Return: 1 if string is OK, 0 if string is bad. */ int VerifyKHS(char *ss) { int symcount[27]; /* 0 is normal pairs. 1-26 for pseudoknots */ int i; int pos; int status = 1; for (i = 0; i < 27; i++) symcount[i] = 0; for (pos = 0; ss[pos] != '\0'; pos++) { if (ss[pos] > 127) /* evade SGI ctype.h islower(), isupper() bug */ { status = 0; fprintf(stderr, " structure has garbage symbol (val %d) at position %d\n", (int) ss[pos], pos); } else if (ss[pos] == '>') symcount[0] ++; else if (ss[pos] == '<') symcount[0] --; else if (isupper((int) ss[pos])) symcount[ss[pos] - 'A' + 1] ++; else if (islower((int) ss[pos])) symcount[ss[pos] - 'a' + 1] --; else if (ss[pos] != '.') { status = 0; fprintf(stderr, " structure has invalid symbol %c at position %d\n", ss[pos], pos); } } if (symcount[0] != 0) { status = 0; fprintf(stderr, " structure has extra paired bases: %d on %s\n", abs(symcount[0]), (symcount[0] > 0) ? "left" : "right"); } for (i = 1; i < 27; i++) if (symcount[i] != 0) { status = 0; fprintf(stderr, " structure has extra paired bases for pseudoknot %c: %d on %s\n", (char) (i + 'A' - 1), abs(symcount[i]), (symcount[i] > 0) ? "left" : "right"); } return status; } tRNAscan-SE-2.0/src/stack.c0000644000543100007160000000441611021467306014677 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* stack.c * SRE, Thu Mar 3 10:08:48 1994 * * Implementation of generic stack structures. */ #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /************************************************************ * intstack_s implementation. * * Functions: InitIntStack() - returns ptr to new stack * PushIntStack() - (void) * PopIntStack() - returns 1 on success, 0 if stack empty * FreeIntStack() - returns number of elements free'd, or 0 if * stack was empty. * * Implementation of the pushdown stack for storing single * integers. *************************************************************/ struct intstack_s * InitIntStack(void) { struct intstack_s *stack; if ((stack = (struct intstack_s *) malloc (sizeof(struct intstack_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); stack->nxt = NULL; return stack; } void PushIntStack(struct intstack_s *stack, int data) { struct intstack_s *new; if ((new = (struct intstack_s *) malloc (sizeof(struct intstack_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); new->data = data; new->nxt = stack->nxt; stack->nxt = new; } int PopIntStack(struct intstack_s *stack, int *ret_data) { struct intstack_s *old; if (stack->nxt == NULL) return 0; old = stack->nxt; stack->nxt = old->nxt; *ret_data = old->data; free(old); return 1; } void ReverseIntStack(struct intstack_s *stack) { struct intstack_s *old; struct intstack_s *new; old = stack->nxt; stack->nxt = NULL; while (old != NULL) { new = old; /* remove one from top of old stack */ old = old->nxt; new->nxt = stack->nxt; /* push it onto new stack */ stack->nxt = new; } } int FreeIntStack( struct intstack_s *stack ) { int data; int count = 0; while (PopIntStack(stack, &data)) count++; free(stack); return count; } tRNAscan-SE-2.0/src/selex.c0000644000543100007160000006061011021467305014707 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* selex.c * * Fri Dec 4 17:43:24 1992, SRE: * Reading and writing aligned sequences to/from disk files. * Implements a new, broader specification of SELEX format * and supercedes alignio.c. * * SRE, Tue Nov 9 17:40:50 1993: * major revision. #= special comments and aliinfo_s optional * alignment info support added. Support for #=CS (consensus * secondary structure), #=SS (individual secondary structure), * #=RF (reference coordinate system), #=SQ (per-sequence header info), * and #=AU ("author") added. * * SRE, Mon Jan 30 14:41:49 1995: * #=SA side chain % surface accessibility annotation supported * * SELEX format is documented in Docs/formats.tex. **************************************************************************** */ #include #include #include #include #include #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static void homogenize_gapsym(char *s, char gapsym); static int copy_alignment_line(char *aseq, int apos, int name_rcol, char *buffer, int lcol, int rcol, char gapsym); static char commentsyms[] = "%#"; /* Function: ReadSELEX() * * Read multiple aligned sequences from the file seqfile. * Store aligned sequences in aseqs, names in names, and * the number of sequences in num. * * Memory is allocated for aseqs and names, and they must be * free'd by the caller. * * If optional information is desired, a non-NULL ainfo * pointer is passed. * * Returns 1 on success. Returns 0 on failure and sets * squid_errno to indicate the cause of the failure. */ int ReadSELEX(char *seqfile, char ***ret_aseqs, int *ret_num, AINFO *ainfo) { FILE *fp; /* ptr to opened seqfile */ char **aseqs; /* aligned seqs */ int num; /* number of seqs read */ char buffer[LINEBUFLEN]; /* input buffer for lines */ char bufcpy[LINEBUFLEN]; /* strtok'able copy of buffer */ struct block_struc { /** alignment data for a block: */ int lcol; /* furthest left aligned sym */ int rcol; /* furthest right aligned sym */ } *blocks; int blocknum; /* number of blocks in file */ char *nptr; /* ptr to start of name on line */ char *sptr; /* ptr into sequence on line */ int currnum; /* num. seqs in given block */ int currblock; /* index for blocks */ int i; /* loop counter */ int seqidx; /* counter for seqs */ int alen; /* length of alignment */ int warn_names; /* becomes TRUE if names don't match between blocks */ int headnum; /* seqidx in per-sequence header info */ int currlen; int count; /*************************************************** * First pass across file. * Count seqs, get names, determine column info * Determine what sorts of info are active in this file. ***************************************************/ ainfo->flags = 0; /* open the file for reading */ fp = fopen(seqfile, "r"); if (fp == NULL) { squid_errno = SQERR_NOFILE; return 0; } /* get first line of the block * (non-comment, non-blank) */ do { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { squid_errno = SQERR_NODATA; return 0; } strcpy(bufcpy, buffer); if (*buffer == '#') { if (strncmp(buffer, "#=CS", 4) == 0) ainfo->flags |= AINFO_CS; else if (strncmp(buffer, "#=RF", 4) == 0) ainfo->flags |= AINFO_RF; } } while ((nptr = strtok(bufcpy, WHITESPACE)) == NULL || (strchr(commentsyms, *nptr) != NULL)); blocknum = 0; warn_names = FALSE; while (!feof(fp)) { /* allocate for info about this block. */ if (blocknum == 0) blocks = (struct block_struc *) malloc (sizeof(struct block_struc)); else blocks = (struct block_struc *) realloc (blocks, (blocknum+1) * sizeof(struct block_struc)); if (blocks == NULL) { squid_errno = SQERR_MEM; return 0; } blocks[blocknum].lcol = LINEBUFLEN+1; blocks[blocknum].rcol = -1; currnum = 0; while (nptr != NULL) /* becomes NULL when this block ends. */ { /* First block only: save names */ if (blocknum == 0) { if (currnum == 0) ainfo->sqinfo = (SQINFO *) malloc (sizeof(SQINFO)); else ainfo->sqinfo = (SQINFO *) realloc (ainfo->sqinfo, (currnum + 1) * sizeof(SQINFO)); if (ainfo->sqinfo == NULL) { squid_errno = SQERR_MEM; return 0; } ainfo->sqinfo[currnum].flags = 0; SetSeqinfoString(&(ainfo->sqinfo[currnum]), nptr, SQINFO_NAME); } else /* in each additional block: check names */ { if (strcmp(ainfo->sqinfo[currnum].name, nptr) != 0) warn_names = TRUE; } currnum++; /* check rcol, lcol */ if ((sptr = strtok(NULL, WHITESPACE)) != NULL) { /* is this the furthest left we've seen word 2 in this block? */ if (sptr - bufcpy < blocks[blocknum].lcol) blocks[blocknum].lcol = sptr - bufcpy; /* look for right side in buffer */ for (sptr = buffer + strlen(buffer) - 1; strchr(WHITESPACE, *sptr) != NULL; sptr --) /* do nothing */ ; if (sptr - buffer > blocks[blocknum].rcol) blocks[blocknum].rcol = sptr - buffer; } /* get the next line; blank line means end of block */ do { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { nptr = NULL; break; } strcpy(bufcpy, buffer); if (strncmp(buffer, "#=SS", 4) == 0) ainfo->sqinfo[currnum-1].flags |= SQINFO_SS; else if (strncmp(buffer, "#=SA", 4) == 0) ainfo->sqinfo[currnum-1].flags |= SQINFO_SA; else if (strncmp(buffer, "#=CS", 4) == 0) ainfo->flags |= AINFO_CS; else if (strncmp(buffer, "#=RF", 4) == 0) ainfo->flags |= AINFO_RF; if ((nptr = strtok(bufcpy, WHITESPACE)) == NULL) break; } while (strchr(commentsyms, *nptr) != NULL); } /* check that number of sequences matches expected */ if (blocknum == 0) num = currnum; else if (currnum != num) { squid_errno = SQERR_FORMAT; return 0; } blocknum++; /* get first line of next block * (non-comment, non-blank) */ do { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { nptr = NULL; break; } strcpy(bufcpy, buffer); } while ((nptr = strtok(bufcpy, WHITESPACE)) == NULL || (strchr(commentsyms, *nptr) != NULL)); } /*************************************************** * Get ready for second pass: * figure out the length of the alignment * malloc space * rewind the file ***************************************************/ alen = 0; for (currblock = 0; currblock < blocknum; currblock++) alen += blocks[currblock].rcol - blocks[currblock].lcol + 1; rewind(fp); /* allocations */ if ((aseqs = (char **) malloc (num * sizeof(char *))) == NULL) { squid_errno = SQERR_MEM; return 0; } if ((ainfo->flags & AINFO_CS) && (ainfo->cs = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } if ((ainfo->flags & AINFO_RF) && (ainfo->rf = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } for (i = 0; i < num; i++) { if ((aseqs[i] = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } if ((ainfo->sqinfo[i].flags & SQINFO_SS) && (ainfo->sqinfo[i].ss = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } if ((ainfo->sqinfo[i].flags & SQINFO_SA) && (ainfo->sqinfo[i].sa = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } } ainfo->alen = alen; ainfo->flags |= AINFO_ALEN; /*************************************************** * Second pass across file. Parse header; assemble sequences ***************************************************/ /* We've now made a complete first pass over the file. We know how * many blocks it contains, we know the number of seqs in the first * block, and we know every block has the same number of blocks; * so we can be a bit more cavalier about error-checking as we * make the second pass. */ /* Look for header */ headnum = 0; for (;;) { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { squid_errno = SQERR_NODATA; return 0; } strcpy(bufcpy, buffer); if ((nptr = strtok(bufcpy, WHITESPACE)) == NULL) continue; /* skip blank lines */ if (strcmp(nptr, "#=AU") == 0 && /* "author" info */ (sptr = strtok(NULL, "\n")) != NULL) { strncpy(ainfo->au,sptr,63); ainfo->au[63] = '\0'; ainfo->flags |= AINFO_AUTH; } else if (strcmp(nptr, "#=SQ") == 0) /* per-sequence header info */ { /* first field is the name */ if ((sptr = strtok(NULL, WHITESPACE)) == NULL) { squid_errno = SQERR_FORMAT; return 0; } if (strcmp(sptr, ainfo->sqinfo[headnum].name) != 0) warn_names = TRUE; /* second field is the weight */ if ((sptr = strtok(NULL, WHITESPACE)) == NULL) { squid_errno = SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[headnum]), sptr, SQINFO_WGT); /* third field is database source id */ if ((sptr = strtok(NULL, WHITESPACE)) == NULL) { squid_errno = SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[headnum]), sptr, SQINFO_ID); /* fourth field is database accession number */ if ((sptr = strtok(NULL, WHITESPACE)) == NULL) { squid_errno = SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[headnum]), sptr, SQINFO_ACC); /* fifth field is start..stop::olen */ if ((sptr = strtok(NULL, ".:")) == NULL) { squid_errno = SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[headnum]), sptr, SQINFO_START); if ((sptr = strtok(NULL, ".:")) == NULL) { squid_errno = SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[headnum]), sptr, SQINFO_STOP); if ((sptr = strtok(NULL, ":\t ")) == NULL) { squid_errno = SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[headnum]), sptr, SQINFO_OLEN); /* rest of line is optional description */ if ((sptr = strtok(NULL, "\n")) != NULL) SetSeqinfoString(&(ainfo->sqinfo[headnum]), sptr, SQINFO_DESC); headnum++; } else if (strcmp(nptr, "#=CS") == 0) break; else if (strcmp(nptr, "#=RF") == 0) break; else if (strchr(commentsyms, *nptr) == NULL) break; /* non-comment, non-header */ } currlen = 0; for (currblock = 0 ; currblock < blocknum; currblock++) { /* parse the block */ seqidx = 0; while (nptr != NULL) { /* Consensus structure */ if (strcmp(nptr, "#=CS") == 0) { if (! copy_alignment_line(ainfo->cs, currlen, strlen(nptr)-1, buffer, blocks[currblock].lcol, blocks[currblock].rcol, (char) '.')) { squid_errno = SQERR_FORMAT; return 0; } } /* Reference coordinates */ else if (strcmp(nptr, "#=RF") == 0) { if (! copy_alignment_line(ainfo->rf, currlen, strlen(nptr)-1, buffer, blocks[currblock].lcol, blocks[currblock].rcol, (char) ' ')) { squid_errno = SQERR_FORMAT; return 0; } } /* Individual secondary structure */ else if (strcmp(nptr, "#=SS") == 0) { if (! copy_alignment_line(ainfo->sqinfo[seqidx-1].ss, currlen, strlen(nptr)-1, buffer, blocks[currblock].lcol, blocks[currblock].rcol, (char) '.')) { squid_errno = SQERR_FORMAT; return 0; } } /* Side chain % surface accessibility code */ else if (strcmp(nptr, "#=SA") == 0) { if (! copy_alignment_line(ainfo->sqinfo[seqidx-1].sa, currlen, strlen(nptr)-1, buffer, blocks[currblock].lcol, blocks[currblock].rcol, (char) '.')) { squid_errno = SQERR_FORMAT; return 0; } } /* Aligned sequence; avoid unparsed machine comments */ else if (strncmp(nptr, "#=", 2) != 0) { if (! copy_alignment_line(aseqs[seqidx], currlen, strlen(nptr)-1, buffer, blocks[currblock].lcol, blocks[currblock].rcol, (char) '.')) { squid_errno = SQERR_FORMAT; return 0; } seqidx++; } /* get next line */ for (;;) { nptr = NULL; if (fgets(buffer, LINEBUFLEN, fp) == NULL) break; /* EOF */ strcpy(bufcpy, buffer); if ((nptr = strtok(bufcpy, WHITESPACE)) == NULL) break; /* blank */ if (strncmp(buffer, "#=", 2) == 0) break; /* machine comment */ if (strchr(commentsyms, *nptr) == NULL) break; /* data */ } } /* end of a block */ currlen += blocks[currblock].rcol - blocks[currblock].lcol + 1; /* get line 1 of next block */ for (;;) { if (fgets(buffer, LINEBUFLEN, fp) == NULL) break; /* no data */ strcpy(bufcpy, buffer); if ((nptr = strtok(bufcpy, WHITESPACE)) == NULL) continue; /* blank */ if (strncmp(buffer, "#=", 2) == 0) break; /* machine comment */ if (strchr(commentsyms, *nptr) == NULL) break; /* non-comment */ } } /* end of the file */ /* Lengths in sqinfo are for raw sequence (ungapped), * and SS, SA are 0..rlen-1 not 0..alen-1. * Only the seqs with structures come out of here with lengths set. */ for (seqidx = 0; seqidx < num; seqidx++) { int apos, rpos; /* secondary structures */ if (ainfo->sqinfo[seqidx].flags & SQINFO_SS) { for (apos = rpos = 0; apos < alen; apos++) if (! isgap(aseqs[seqidx][apos])) { ainfo->sqinfo[seqidx].ss[rpos] = ainfo->sqinfo[seqidx].ss[apos]; rpos++; } ainfo->sqinfo[seqidx].ss[rpos] = '\0'; homogenize_gapsym(ainfo->sqinfo[seqidx].ss, (char) '.'); } /* Surface accessibility */ if (ainfo->sqinfo[seqidx].flags & SQINFO_SA) { for (apos = rpos = 0; apos < alen; apos++) if (! isgap(aseqs[seqidx][apos])) { ainfo->sqinfo[seqidx].sa[rpos] = ainfo->sqinfo[seqidx].sa[apos]; rpos++; } ainfo->sqinfo[seqidx].sa[rpos] = '\0'; homogenize_gapsym(ainfo->sqinfo[seqidx].sa, (char) '.'); } } /* NULL-terminate all the strings */ if (ainfo->flags & AINFO_RF) ainfo->rf[alen] = '\0'; if (ainfo->flags & AINFO_CS) { ainfo->cs[alen] = '\0'; homogenize_gapsym(ainfo->cs, (char) '.'); } for (seqidx = 0; seqidx < num; seqidx++) { aseqs[seqidx][alen] = '\0'; homogenize_gapsym(aseqs[seqidx], (char) '.'); } /* find raw sequence lengths for sqinfo */ for (seqidx = 0; seqidx < num; seqidx++) { count = 0; for (sptr = aseqs[seqidx]; *sptr != '\0'; sptr++) if (!isgap(*sptr)) count++; ainfo->sqinfo[seqidx].len = count; ainfo->sqinfo[seqidx].flags |= SQINFO_LEN; } /*************************************************** * Garbage collection and return ***************************************************/ fclose(fp); free(blocks); if (warn_names) Warn("sequences may be in different orders in blocks of %s?", seqfile); *ret_num = num; *ret_aseqs = aseqs; return 1; } /* Function: WriteSELEX() * * Write aligned sequences to an open file pointer, * breaking into multiple blocks if the sequences are * long. Number of symbols written per line is set by cpl. * The alignment must be flushed (all aseqs the same length). * * cpl cannot exceed 255. * * May also write optional information from ainfo; * ainfo may be NULL. * * Returns 1 on success. Returns 0 on failure, and sets * squid_errno to indicate the cause. */ int WriteSELEX(FILE *fp, char **aseqs, int num, struct aliinfo_s *ainfo, int cpl) { int idx; /* counter for sequences */ int namelen; /* maximum name length used */ int len; /* tmp variable for name lengths */ char buffer[256]; /* buffer for writing seq */ int alen; int currpos; char **ss; /* aligned secondary structure strings */ char **sa; /* aligned accessibility strings */ alen = (ainfo->flags & AINFO_ALEN) ? ainfo->alen : strlen(aseqs[0]); /* calculate max namelen used */ namelen = 0; for (idx = 0; idx < num; idx++) if ((len = strlen(ainfo->sqinfo[idx].name)) > namelen) namelen = len; if (namelen < 6) namelen = 6; /* Make aligned secondary structure strings */ ss = (char **) MallocOrDie(sizeof(char *) * num); sa = (char **) MallocOrDie(sizeof(char *) * num); for (idx = 0; idx < num; idx++) { if (ainfo->sqinfo[idx].flags & SQINFO_SS) MakeAlignedString(aseqs[idx], alen, ainfo->sqinfo[idx].ss, &(ss[idx])); if (ainfo->sqinfo[idx].flags & SQINFO_SA) MakeAlignedString(aseqs[idx], alen, ainfo->sqinfo[idx].sa, &(sa[idx])); } /* Write header info */ if (ainfo->flags & AINFO_AUTH) fprintf(fp, "#=AU %s\n", ainfo->au); if ((ainfo->sqinfo[0].flags & SQINFO_WGT) || (ainfo->sqinfo[0].flags & SQINFO_ID) || (ainfo->sqinfo[0].flags & SQINFO_ACC) || (ainfo->sqinfo[0].flags & SQINFO_START) || (ainfo->sqinfo[0].flags & SQINFO_STOP) || (ainfo->sqinfo[0].flags & SQINFO_OLEN) || (ainfo->sqinfo[0].flags & SQINFO_DESC)) for (idx = 0; idx < num; idx++) fprintf(fp, "#=SQ %-*.*s %6.4f %s %s %d..%d::%d %s\n", namelen, namelen, ainfo->sqinfo[idx].name, (ainfo->sqinfo[idx].flags & SQINFO_WGT) ? ainfo->sqinfo[idx].weight : 1.0, (ainfo->sqinfo[idx].flags & SQINFO_ID) ? ainfo->sqinfo[idx].id : "-", (ainfo->sqinfo[idx].flags & SQINFO_ACC) ? ainfo->sqinfo[idx].id : "-", (ainfo->sqinfo[idx].flags & SQINFO_START) ? ainfo->sqinfo[idx].start : 0, (ainfo->sqinfo[idx].flags & SQINFO_STOP) ? ainfo->sqinfo[idx].stop : 0, (ainfo->sqinfo[idx].flags & SQINFO_OLEN) ? ainfo->sqinfo[idx].olen : 0, (ainfo->sqinfo[idx].flags & SQINFO_DESC) ? ainfo->sqinfo[idx].desc : "-"); fprintf(fp, "\n"); /* main loop: write seqs in blocks. */ for (currpos = 0; currpos < alen; currpos += cpl) { /* Reference coord system */ if (ainfo->flags & AINFO_RF) { strncpy(buffer, ainfo->rf + currpos, cpl); buffer[cpl] = '\0'; fprintf(fp, "%-*.*s %s\n", namelen, namelen, "#=RF", buffer); } /* Consensus secondary structure */ if (ainfo->flags & AINFO_CS) { strncpy(buffer, ainfo->cs + currpos, cpl); buffer[cpl] = '\0'; fprintf(fp, "%-*.*s %s\n", namelen, namelen, "#=CS", buffer); } for (idx = 0; idx < num; idx++) { /* Aligned sequence */ strncpy(buffer, aseqs[idx] + currpos, cpl); buffer[cpl] = '\0'; fprintf(fp, "%-*.*s %s\n", namelen, namelen, ainfo->sqinfo[idx].name, buffer); /* Individual secondary structure */ if (ainfo->sqinfo[idx].flags & SQINFO_SS) { strncpy(buffer, ss[idx] + currpos, cpl); buffer[cpl] = '\0'; fprintf(fp, "%-*.*s %s\n", namelen, namelen, "#=SS", buffer); } /* Surface accessibility */ if (ainfo->sqinfo[idx].flags & SQINFO_SA) { strncpy(buffer, sa[idx] + currpos, cpl); buffer[cpl] = '\0'; fprintf(fp, "%-*.*s %s\n", namelen, namelen, "#=SA", buffer); } } /* put blank line between blocks */ fprintf(fp, "\n"); } /* Garbage collection */ for (idx = 0; idx < num; idx++) if (ainfo->sqinfo[idx].flags & SQINFO_SS) free(ss[idx]); free(ss); return 1; } /* Function: homogenize_gapsym() * * Purpose: Make gap symbols homogeneous. */ static void homogenize_gapsym(char *s, char gapsym) { for (; *s != '\0'; s++) if (isgap(*s)) *s = gapsym; } /* Function: copy_alignment_line() * * Purpose: Given a line from an alignment file, and bounds lcol,rcol * on what part of it may be sequence, save the alignment into * aseq starting at position apos. * * name_rcol is set to the rightmost column this aseqs's name * occupies; if name_rcol >= lcol, we have a special case in * which the name intrudes into the sequence zone. */ static int copy_alignment_line(char *aseq, int apos, int name_rcol, char *buffer, int lcol, int rcol, char gapsym) { char *s1, *s2; int i; s1 = aseq + apos; s2 = buffer; /* be careful that buffer doesn't end before lcol! */ for (i = 0; i < lcol; i++) if (*s2) s2++; for (i = lcol; i <= rcol; i++) { if (*s2 == '\t') { Warn("TAB characters will corrupt a SELEX alignment! Please remove them first."); return 0; } if (name_rcol >= i) /* name intrusion special case: pad left w/ gaps */ *s1 = gapsym; /* short buffer special case: pad right w/ gaps */ else if (*s2 == '\0' || *s2 == '\n') *s1 = gapsym; else /* normal case: copy buffer into aseq */ *s1 = *s2; s1++; if (*s2) s2++; } return 1; } /* Function: DealignAseqs() * * Given an array of (num) aligned sequences aseqs, * strip the gaps, represented by ' ' space characters. * Store the raw sequences in a new allocated array. * * Caller is responsible for free'ing the memory allocated to * rseqs. * * Returns 1 on success. Returns 0 and sets squid_errno on * failure. */ int DealignAseqs(char **aseqs, int num, char ***ret_rseqs) { char **rseqs; /* de-aligned sequence array */ int idx; /* counter for sequences */ int depos; /* position counter for dealigned seq*/ int apos; /* position counter for aligned seq */ int seqlen; /* length of aligned seq */ /* alloc space */ if ((rseqs = (char **) malloc (num * sizeof(char *))) == NULL) { squid_errno = SQERR_MEM; return 0; } /* main loop */ for (idx = 0; idx < num; idx++) { seqlen = strlen(aseqs[idx]); /* alloc space */ if ((rseqs[idx] = (char *) malloc ((seqlen + 1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } /* strip gaps */ depos = 0; for (apos = 0; aseqs[idx][apos] != '\0'; apos++) if (!isgap(aseqs[idx][apos])) { rseqs[idx][depos] = aseqs[idx][apos]; depos++; } rseqs[idx][depos] = '\0'; } *ret_rseqs = rseqs; return 1; } /* Function: IsSELEXFormat() * * Return TRUE if filename may be in SELEX format. * * Accuracy is sacrificed for speed; a TRUE return does * *not* guarantee that the file will pass the stricter * error-checking of ReadSELEX(). All it checks is that * the first 500 non-comment lines of a file are * blank, or if there's a second "word" on the line * it looks like sequence (i.e., it's not kOtherSeq). * * Returns TRUE or FALSE. */ int IsSELEXFormat(char *filename) { FILE *fp; /* ptr to open sequence file */ char buffer[LINEBUFLEN]; char *sptr; /* ptr to first word */ int linenum; if ((fp = fopen(filename, "r")) == NULL) { squid_errno = SQERR_NOFILE; return 0; } linenum = 0; while (linenum < 500 && fgets(buffer, LINEBUFLEN, fp) != NULL) { linenum++; /* dead giveaways for extended SELEX */ if (strncmp(buffer, "#=AU", 4) == 0) goto DONE; else if (strncmp(buffer, "#=SQ", 4) == 0) goto DONE; else if (strncmp(buffer, "#=SS", 4) == 0) goto DONE; else if (strncmp(buffer, "#=CS", 4) == 0) goto DONE; else if (strncmp(buffer, "#=RF", 4) == 0) goto DONE; /* a comment? */ if (strchr(commentsyms, *buffer) != NULL) continue; /* a blank line? */ if ((sptr = strtok(buffer, WHITESPACE)) == NULL) continue; /* a one-word line (name only) is possible, though rare */ if ((sptr = strtok(NULL, "\n")) == NULL) continue; if (Seqtype(sptr) == kOtherSeq) {fclose(fp); return 0;} } DONE: fclose(fp); return 1; } /* Function: TruncateNames() * * Make sure all names are a single word. * - if they are blank, make a name up (use the number of the sequence) * - if it's already one word, leave it alone * - if it's more than one word, put a terminator '\0' after the * first word * * Used to check an array of names before writing a SELEX-format file. * * Returns 1 on success. Returns 0 on failure and sets squid_errno * to indicate the cause. */ int TruncateNames(char **names, int N) { int idx; char newname[32]; for (idx = 0; idx < N; idx++) if (names[idx] == NULL || strtok(names[idx], " \t\n") == NULL) { (void) sprintf(newname, "%d", idx); if (names[idx] != NULL) free(names[idx]); names[idx] = Strdup(newname); } return 1; } tRNAscan-SE-2.0/src/interleaved.c0000644000543100007160000004016611021467304016074 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* interleaved.c * I/O of interleaved format multiple alignments. * Modified from selex.c * * Fri Dec 4 17:43:24 1992, SRE: * Reading and writing aligned sequences to/from disk files. * Implements a new, broader specification of SELEX format * and supercedes alignio.c. * * SRE, Tue Nov 9 17:40:50 1993: * major revision. #= special comments and aliinfo_s optional * alignment info support added. Support for #=CS (consensus * secondary structure), #=SS (individual secondary structure), * #=RF (reference coordinate system), #=SQ (per-sequence header info), * and #=AU ("author") added. * * SRE, Mon Jan 30 14:41:49 1995: * #=SA side chain % surface accessibility annotation supported * * SRE, Mon Sep 11 09:20:08 1995 * selex.c generalized and simplified to make interleaved.c * * SELEX format is documented in Docs/formats.tex. **************************************************************************** */ #include #include #include #include #include #include /* SunOS 4.x isn't fully ANSI-compliant. */ #include "squid.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static void homogenize_gapsym(char *s, char gapsym); static int copy_alignment_line(char *aseq, int apos, int name_rcol, char *buffer, int lcol, int rcol); static char commentsyms[] = "#%"; /* Function: homogenize_gapsym() * * Purpose: Make gap symbols homogeneous. */ static void homogenize_gapsym(char *s, char gapsym) { for (; *s != '\0'; s++) if (isgap(*s)) *s = gapsym; } /* Function: copy_alignment_line() * * Purpose: Given a line from an alignment file, and bounds lcol,rcol * on what part of it may be sequence, save the alignment into * aseq starting at position apos. * * name_rcol is set to the rightmost column this aseqs's name * occupies; if name_rcol >= lcol, we have a special case in * which the name intrudes into the sequence zone. */ static int copy_alignment_line(char *aseq, int apos, int name_rcol, char *buffer, int lcol, int rcol) { char *s1, *s2; int i; s1 = aseq + apos; s2 = buffer; /* be careful that buffer doesn't end before lcol! */ for (i = 0; i < lcol; i++) if (*s2) s2++; for (i = lcol; i <= rcol; i++) { if (*s2 == '\t') { Warn("TAB characters will corrupt a SELEX alignment! Please remove them first."); return 0; } if (name_rcol >= i) *s1 = '.'; /* name intrusion: pad left w/ gaps */ else if (*s2 == '\0' || *s2 == '\n') *s1 = '.'; /* short buffer: pad right w/ gaps */ else *s1 = *s2; /* normal: copy buffer into aseq */ s1++; if (*s2) s2++; } return 1; } /* Function: is_blankline() * * Return TRUE if line is all whitespace. */ static int is_blankline(char *buffer) { for (; *buffer != '\0'; buffer++) if (! isspace(*buffer)) return 0; return 1; } /* CLUSTALV and CLUSTALW support * * parse_header() and is_dataline() functions for ClustalV and ClustalW * interleaved multiple alignment format */ /*ARGSUSED*/ static int parse_clustal(FILE *fp, AINFO *ainfo, int *got_sqinfo) { char buffer[LINEBUFLEN]; do { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { squid_errno = SQERR_FORMAT; return 0; } } while (strncmp(buffer, "CLUSTAL ", 8) != 0 || strstr(buffer, "multiple sequence alignment") == NULL); *got_sqinfo = FALSE; return 1; } static int dataline_clustal(char *buf, char *expected_name) { while (*buf && isspace(*buf)) buf++; if (*buf == '\0' || strchr(commentsyms, *buf) != NULL) return 0; /* blank or comment */ if (expected_name != NULL && strncmp(buf, expected_name, strlen(expected_name) == 0)) return 1; /* matches expected seq name */ for (; *buf != '\0'; buf++) { /* Clustal has no coord lines to worry about */ if (*buf == '*' || *buf == '.') continue; /* possible consensus line */ if (isalnum(*buf)) return 1; /* name or seq character */ if (*buf != ' ' && isgap(*buf)) return 1; /* possible all-gap line */ } return 0; } /* GCG MSF support * * parse_header() and is_dataline() routines for GCG MSF alignments */ static int parse_MSF(FILE *fp, AINFO *ainfo, int *got_sqinfo) { char buffer[LINEBUFLEN]; char *sptr; int nseq; /* Get first dividing line. MSF format specifies ints after MSF: and Check: * but we don't make sure of this */ do { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { squid_errno = SQERR_FORMAT; return 0; } } while (strstr(buffer, " MSF: ") == NULL || strstr(buffer, " Check: ") == NULL || strstr(buffer, " ..") == NULL); /* Get names, weight from header */ nseq = 0; /*CONSTCOND*/ while (1) { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { squid_errno = SQERR_FORMAT; return 0; } if (is_blankline(buffer)) continue; if (strncmp(buffer, "//", 2) == 0) break; sptr = strtok(buffer, WHITESPACE); if (sptr == NULL || strcmp(sptr, "Name:") != 0 || strstr(sptr+5, "Weight:") != 0) { squid_errno = SQERR_FORMAT; return 0; } if (nseq == 0) ainfo->sqinfo = (SQINFO *) malloc (sizeof(SQINFO)); else ainfo->sqinfo = (SQINFO *) realloc (ainfo->sqinfo, (nseq + 1) * sizeof(SQINFO)); if (ainfo->sqinfo == NULL) { squid_errno = SQERR_MEM; return 0; } ainfo->sqinfo[nseq].flags = 0; if ((sptr = strtok(NULL, WHITESPACE)) == NULL) {squid_errno=SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[nseq]), sptr, SQINFO_NAME); while (sptr != NULL && strcmp(sptr, "Weight:") != 0) sptr = strtok(NULL, WHITESPACE); if ((sptr = strtok(NULL, WHITESPACE)) == NULL) {squid_errno=SQERR_FORMAT; return 0; } SetSeqinfoString(&(ainfo->sqinfo[nseq]), sptr, SQINFO_WGT); nseq++; } *got_sqinfo = TRUE; return 1; } static int dataline_MSF(char *buf, char *expected_name) { while (*buf && isspace(*buf)) buf++; if (*buf == '\0' || strchr(commentsyms, *buf) != NULL) return 0; /* blank or comment */ if (expected_name != NULL && strncmp(buf, expected_name, strlen(expected_name) == 0)) return 1; /* matches expected seq name */ for (; *buf != '\0'; buf++) { /* MSF has coordinate lines to worry about */ if (isspace(*buf)) continue; /* no info from spaces */ if (isalpha(*buf)||isgap(*buf)) return 1; /* has data on it */ } return 0; } /* Function: ReadInterleaved() * * Purpose: Read multiple aligned sequences from the file seqfile. * Store aligned sequences in aseqs, names in names, and * the number of sequences in num. * * Memory is allocated for aseqs and names, and they must be * free'd by the caller. * * If optional information is desired, a non-NULL ainfo * pointer is passed. * * Args: seqfile: name of alignment file to read. * parse_header(): routine to parse the header of the file * is_dataline(): routine to determine if a line contains data * ret_aseqs: RETURN: 2D array of aligned sequences * ret_anum: RETURN: number of aligned sequences * ainfo: RETURN: optional alignment information * * Returns 1 on success. Returns 0 on failure and sets * squid_errno to indicate the cause of the failure. */ int ReadInterleaved(char *seqfile, int (*parse_header)(FILE *, AINFO *, int *), int (*is_dataline)(char *, char *), char ***ret_aseqs, int *ret_num, AINFO *ainfo) { FILE *fp; /* ptr to opened seqfile */ char **aseqs; /* aligned seqs */ int nseq; /* number of seqs read */ char buffer[LINEBUFLEN]; /* input buffer for lines */ char bufcpy[LINEBUFLEN]; /* copy of buffer for strtok */ struct block_struc { /** alignment data for a block: */ int lcol; /* furthest left aligned sym */ int rcol; /* furthest right aligned sym */ } *blocks; int blocknum; /* number of blocks in file */ char *sptr; /* ptr into line during parsing */ int currblock; /* index for blocks */ int seqidx; /* counter for seqs */ int alen; /* length of alignment */ int warn_names; /* becomes TRUE if names don't match between blocks */ int currlen; int count; int inblock; /* TRUE if in a block of data */ long offset; /* used for skipping header */ int got_sqinfo; /* TRUE if header gave us sqinfo */ /*************************************************** * Parse the header of the file, according to caller-supplied function. * The parser is responsible for making sure there are * no non-comment lines before the first block. Comment * or blank lines are OK. The parser may also fill fields * into ainfo. ***************************************************/ /* open the file for reading */ fp = fopen(seqfile, "r"); if (fp == NULL) { squid_errno = SQERR_NOFILE; return 0; } if (! (*parse_header) (fp, ainfo, &got_sqinfo)) return 0; offset = ftell(fp); /* where are we in the file? */ /*************************************************** * First pass across file. * Count seqs, get names, determine column info ***************************************************/ ainfo->flags = 0; blocknum = 0; nseq = 0; inblock = FALSE; blocks = NULL; warn_names = FALSE; while (!feof(fp)) { /* allocate for info about this block. */ if (blocknum == 0) blocks = (struct block_struc *) malloc (sizeof(struct block_struc)); else blocks = (struct block_struc *) realloc (blocks, (blocknum+1) * sizeof(struct block_struc)); if (blocks == NULL) { squid_errno = SQERR_MEM; return 0; } blocks[blocknum].lcol = LINEBUFLEN+1; blocks[blocknum].rcol = -1; seqidx = 0; /*CONSTCOND*/ while (1) /* breaks out when blank line or EOF is hit, see below */ { /* get a data line */ do { if (fgets(buffer, LINEBUFLEN, fp) == NULL) goto BREAKOUT; if (inblock && is_blankline(buffer)) goto BREAKOUT; } while (! (*is_dataline)(buffer, (got_sqinfo || (seqidx < nseq && blocknum > 0)) ? ainfo->sqinfo[seqidx].name : NULL)); /* copy line for strtok'ing. set sptr to first word */ inblock = TRUE; strcpy(bufcpy, buffer); sptr = strtok(bufcpy, WHITESPACE); /* First block only: save names */ if (blocknum == 0 && !got_sqinfo) { if (seqidx == 0) ainfo->sqinfo = (SQINFO *) malloc (sizeof(SQINFO)); else ainfo->sqinfo = (SQINFO *) realloc (ainfo->sqinfo, (seqidx + 1) * sizeof(SQINFO)); if (ainfo->sqinfo == NULL) { squid_errno = SQERR_MEM; return 0; } ainfo->sqinfo[seqidx].flags = 0; SetSeqinfoString(&(ainfo->sqinfo[seqidx]), sptr, SQINFO_NAME); } else /* in each additional block: check names */ { if (strcmp(ainfo->sqinfo[seqidx].name, sptr) != 0) warn_names = TRUE; } seqidx++; /* bump sequence counter */ /* check rcol, lcol */ if ((sptr = strtok(NULL, WHITESPACE)) != NULL) { /* is this the furthest left we've seen word 2 in this block? */ if (sptr - bufcpy < blocks[blocknum].lcol) blocks[blocknum].lcol = sptr - bufcpy; /* look for right side in buffer */ for (sptr = buffer + strlen(buffer) - 1; isspace(*sptr); sptr --) /* do nothing */ ; if (sptr - buffer > blocks[blocknum].rcol) blocks[blocknum].rcol = sptr - buffer; } } /* check that number of sequences matches expected */ BREAKOUT: if (inblock) { if (blocknum != 0 && seqidx != nseq) { squid_errno = SQERR_FORMAT; return 0; } nseq = seqidx; blocknum++; inblock = FALSE; } } /*************************************************** * Get ready for second pass: * figure out the length of the alignment * malloc space * rewind the file ***************************************************/ alen = 0; for (currblock = 0; currblock < blocknum; currblock++) alen += blocks[currblock].rcol - blocks[currblock].lcol + 1; fseek(fp, offset, SEEK_SET); /* rewind to first data block */ /* allocations */ if ((aseqs = (char **) malloc (nseq * sizeof(char *))) == NULL) { squid_errno = SQERR_MEM; return 0; } for (seqidx = 0; seqidx < nseq; seqidx++) if ((aseqs[seqidx] = (char *) malloc ((alen+1) * sizeof(char))) == NULL) { squid_errno = SQERR_MEM; return 0; } ainfo->alen = alen; ainfo->flags |= AINFO_ALEN; /*************************************************** * Second pass across file. Parse alignment ***************************************************/ /* We've now made a complete first pass over the file. We know how * many blocks it contains, we know the number of seqs in the first * block, and we know every block has the same number of blocks; * so we can be a bit more cavalier about error-checking as we * make the second pass. */ currlen = 0; for (currblock = 0 ; currblock < blocknum; currblock++) { for (seqidx = 0; seqidx < nseq; seqidx++) { /* get next line */ do { if (fgets(buffer, LINEBUFLEN, fp) == NULL) { squid_errno = SQERR_FORMAT; return 0; } } while (! (*is_dataline)(buffer, ainfo->sqinfo[seqidx].name)); /* find right boundary of name */ sptr = buffer; while (*sptr && isspace(*sptr)) sptr++; while (*sptr && !isspace(*sptr)) sptr++; /* parse line */ if (! copy_alignment_line(aseqs[seqidx], currlen, sptr - buffer, buffer, blocks[currblock].lcol, blocks[currblock].rcol)) { squid_errno = SQERR_FORMAT; return 0; } } currlen += blocks[currblock].rcol - blocks[currblock].lcol + 1; } /* NULL-terminate all the strings */ for (seqidx = 0; seqidx < nseq; seqidx++) { aseqs[seqidx][alen] = '\0'; homogenize_gapsym(aseqs[seqidx], (char) '.'); } /* find raw sequence lengths for sqinfo */ for (seqidx = 0; seqidx < nseq; seqidx++) { count = 0; for (sptr = aseqs[seqidx]; *sptr != '\0'; sptr++) if (!isgap(*sptr)) count++; ainfo->sqinfo[seqidx].len = count; ainfo->sqinfo[seqidx].flags |= SQINFO_LEN; } /* tidy up the alignment */ MingapAlignment(aseqs, nseq, ainfo); /*************************************************** * Garbage collection and return ***************************************************/ fclose(fp); free(blocks); if (warn_names) Warn("sequences may be in different orders in blocks of %s?", seqfile); *ret_num = nseq; *ret_aseqs = aseqs; return 1; } /* Function: ReadAlignment() * * Purpose: Given a seqfile name and format, hand it off to appropriate * parser. * * Currently, squid can parse alignments from the following * multiple sequence alignment formats: * MSF (U. of Wisconsin GCG package MSF format) * SELEX (NeXagen/CU Boulder SELEX format) * CLUSTAL (Des Higgins' CLUSTALV and CLUSTALW programs) * * Return: 1 on success; 0 on failure. * Returned data should be freed by caller with FreeAlignment() */ int ReadAlignment(char *seqfile, int format, char ***ret_aseqs, int *ret_num, struct aliinfo_s *ret_ainfo) { switch (format) { case kMSF: if (! ReadInterleaved(seqfile, parse_MSF, dataline_MSF, ret_aseqs, ret_num, ret_ainfo)) return 0; break; case kSelex: if (! ReadSELEX(seqfile, ret_aseqs, ret_num, ret_ainfo)) return 0; break; case kClustal: if (! ReadInterleaved(seqfile, parse_clustal, dataline_clustal, ret_aseqs, ret_num, ret_ainfo)) return 0; break; default: squid_errno = SQERR_FORMAT; return 0; } return 1; } tRNAscan-SE-2.0/src/eufind_main.c0000644000543100007160000002147611021467303016052 0ustar pchanlowelab /* eufindtRNA - Eukaryotic tRNA finder * * C implementation of algorithm described by Pavesi, Conterio, * Bolchi, Dieci, & Ottonello in NAR 22:1247-56 (94) * "Identification of new eukaryotic tRNA genes in genomic DNA * databases by a multistep weight matix analysis of transcriptional * control regions" * * To be used in tRNAscan-SE package to increase sensitivity by * complementing tRNAscan 1.3 first-pass scan * * by Todd MJ Lowe 4/8/96 * * Uses Sean Eddy's function library for biological sequence analysis * (Squid v1.5g) * * v1.1: Small bug fixed 8/2000 that caused second of two consecutive tRNAs * (within 40bp) to be missed if the second tRNA scored lower than the first */ #include #include #include #include "squid.h" #include "sqfuncs.h" #include "eufind_const.h" char eufind_version[] = "1.1"; char eufind_date[] = "Aug 2000"; #define OPTIONS "ho:l:X:I:rsDFi:" char usage[] = "\n\ Usage: eufindtRNA [-options] \n\ Find tRNAs in eukaryotic sequences\n\n\ Available options:\n\ -h : help - print version and usage info\n\ -o : save tRNAs in \n\ -r : relaxed mode (no terminators searched for)\n\ -s : strict mode (discard tRNAs with missing terminators)\n\ -l : set max intron+variable loop length (default=140)\n\ -X : manually set final score cutoff to (def=-31.8)\n\ -I : set cutoff for intermediate score (def=-31.25)\n\ -D : save tRNA score components (for Debugging)\n\ -F : don't check for uppercase or DNA alphabet\n\ -i : start nucleotide numbering at (def=1)\n\n"; int main (int argc, char **argv) { char *seqfile; /* file containing aligned seqs */ char *outfile; /* destination file for tRNAs */ int fmt; /* format of seqfile */ FILE *outfp; /* open outfile */ SQFILE *seqfp; SQINFO sqinfo; int i, errno, ShowScores, /* flag for type of info output when saving tRNAs */ RelaxedMode, /* flag for relaxed scanning mode, do not look for poly T terminator signal */ StrictMode, /* require poly T terminator */ NoReformat; /* flag to prevent extra work of /* changing seqs to DNA & upper case */ /* alphabet */ float NoTermPenalty; /* penalty val for tRNAs with no */ /* poly T terminator */ long int sqoffset; /* nucleotide numbering offset (set with -i param) */ char *seq, *revseq, /* sequence */ *iseq, *reviseq; /* encoded seq & encoded reverse comp */ int strand, /* 1 for orig seq, -1 for rev comp */ seqidx; /* current position in seq */ float FirstScore, /* initial (Bbox) logodds score */ IntScore, TotScore, /* cum tRNA logodds scores */ IntScoreCutoff, TotScoreCutoff; /* cutoff for reporting tRNAs */ TRNA_TYPE *tRNA, *prev_tRNA, *swap_tRNA; /* current & previous tRNA info */ int Max_AB_dist; /* max nuc. distance searched upstream */ /* of candidate B boxes for A boxes */ int tRNA_ct; int optchar; extern char *optarg; extern int optind; /*********************************************** * Parse command line ***********************************************/ outfile = NULL; TotScoreCutoff = TOT_SCORE_THRESH; IntScoreCutoff = INT_SCORE_THRESH; Max_AB_dist = MIN_AB_BOX_DIST + AB_BOX_DIST_RANGE; sqoffset = 0; ShowScores = 0; NoTermPenalty = MAX_PENALTY; RelaxedMode = 0; StrictMode = 0; NoReformat = 0; while ((optchar = getopt(argc, argv, OPTIONS)) != -1) switch (optchar) { case 'o': outfile = optarg; break; case 'h': printf("eufindtRNA %s, %s\n%s\n", eufind_version, eufind_date, usage); exit(EXIT_SUCCESS); case 'r': RelaxedMode = 1; break; case 's': NoTermPenalty = 10*MAX_PENALTY; StrictMode = 1; break; case 'X': TotScoreCutoff = atof(optarg); break; case 'D': ShowScores = 1; break; case 'F': NoReformat = 1; break; case 'l': Max_AB_dist = MIN_AB_BOX_DIST + atof(optarg); break; case 'I': IntScoreCutoff = atof(optarg); break; case 'i': sqoffset = atof(optarg)-1; break; default: Die("%s\n", usage); } if (argc -optind != 1) Die("Wrong number of arguments specified on command line\n%s\n", usage); seqfile = argv[optind]; if (outfile == NULL) outfp = stdout; else if ((outfp = fopen(outfile, "w")) == NULL) Die("Failed to open tRNA output file %s", outfile); if ((tRNA = (TRNA_TYPE *) malloc (sizeof(TRNA_TYPE))) == NULL) Die("Memory failure, couldn't allocate tRNA memory\n"); if ((prev_tRNA = (TRNA_TYPE *) malloc (sizeof(TRNA_TYPE))) == NULL) Die("Memory failure, couldn't allocate tRNA memory\n"); /*********************************************** * Determine seq format & open for reading * ***********************************************/ if (! SeqfileFormat(seqfile, &fmt, NULL)) Die("Can't determine format of file %s\n", seqfile); if ((seqfp = SeqfileOpen(seqfile, fmt, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); while (ReadSeq(seqfp, fmt, &seq, &sqinfo)) { if (ShowScores) printf ("Seq: %s\n",sqinfo.name); tRNA_ct = 0; if (!NoReformat) { ToDNA(seq); s2upper(seq); } /* allocate mem for integer-encoded seq (A=0,C=1,G=2,T=3) */ if ((iseq = calloc (sqinfo.len+2, sizeof(char))) == NULL) Die("Memory failure, couldn't allocate sequence\n"); /* integer-encode sequence */ if (errno = IntEncodeSeq(iseq,seq,sqinfo.len)) Die("Unable to encode sequence %s at base %d\n", sqinfo.name,errno); /* Search both strands (0=top strand, -1=bottom strand) */ for (strand=0; strand >= -1; strand--) { Init_tRNA(prev_tRNA); /* clear previous tRNA */ /* take reverse complement of encoded seq if searching bottom strand */ if (strand == -1) { if ((revseq = calloc (sqinfo.len+2, sizeof(char))) == NULL) Die("Memory failure, couldn't allocate reverse sequence\n"); revcomp(revseq, seq); free(seq); seq = revseq; if (IntEncodeSeq(iseq,seq,sqinfo.len)) Die("Unable to encode sequence\n"); } /*********************************************** * Find transcriptional promotor elements * ***********************************************/ seqidx=BBOX_START_IDX-2; while (GetBbox(&FirstScore,&seqidx,iseq,sqinfo.len,strand, ShowScores)) { Init_tRNA(tRNA); tRNA->Bbox_st = seqidx; tRNA->Bbox_end = seqidx + BBOX_LEN-1; tRNA->BboxSc = FirstScore; if (((FirstScore >= SEC_LOBOUND) && (FirstScore <= SEC_HIBOUND)) && (GetSecABox(tRNA,seq))){ if (!GetBestTrxTerm(tRNA,seq,sqinfo.len,NoTermPenalty) && StrictMode) continue; /* look for next B box */ strcpy(tRNA->acodon,"TCA"); /* tRNA->Bbox_end++; */ tRNA->totSc = FirstScore; } else { /* Searching for non-SelCys tRNA */ GetBestABox(tRNA,seq,iseq,sqinfo.len,strand,ShowScores, Max_AB_dist,prev_tRNA->Abox_st); IntScore = tRNA->AboxSc + tRNA->BboxSc + tRNA->ABdistSc; if (IntScore < IntScoreCutoff) continue; /* look for next B box */ if (!RelaxedMode) { if (!GetBestTrxTerm(tRNA,seq,sqinfo.len,NoTermPenalty) && StrictMode) continue; TotScore = IntScore + tRNA->TermSc; if (TotScore < TotScoreCutoff) continue; /* look for next B box */ tRNA->totSc = TotScore; } else tRNA->totSc = IntScore; } Get_tRNA_stats(tRNA,seq,sqinfo.len,strand); if (tRNAOverlap(tRNA,prev_tRNA,strand)) { if (tRNA->totSc < prev_tRNA->totSc) { Init_tRNA(tRNA); /* skip repeat tRNA */ } else { /* swap, but don't save yet */ swap_tRNA = prev_tRNA; prev_tRNA = tRNA; Init_tRNA(swap_tRNA); tRNA = swap_tRNA; } } else { /* no overlap, save & then swap */ if (prev_tRNA->start > 0) { prev_tRNA->idno = ++tRNA_ct; Save_tRNA(prev_tRNA,&sqinfo,seq,strand,ShowScores,sqoffset); } swap_tRNA = prev_tRNA; prev_tRNA = tRNA; Init_tRNA(swap_tRNA); tRNA = swap_tRNA; } } /* find B box */ /* save last buffered tRNA before going to other strand */ if (prev_tRNA->start > 0) { prev_tRNA->idno = ++tRNA_ct; Save_tRNA(prev_tRNA,&sqinfo,seq,strand,ShowScores,sqoffset); } } /* search both strands */ FreeSequence(seq, &sqinfo); free(iseq); } SeqfileClose(seqfp); fclose(outfp); return 0; } tRNAscan-SE-2.0/src/funcs.h0000644000543100007160000001645411021467306014722 0ustar pchanlowelab/* funcs.h * Declarations and prototypes of functions * SRE, Fri Sep 3 09:19:50 1993 * */ #include #include "structs.h" /* * from align.c */ extern int Trace2ali(char *seq, struct trace_s *tr, int watsoncrick, struct align_s **ret_ali); extern int Traces2Alignment(char **rseqs, SQINFO *sqinfo, struct trace_s **tr, int nseq, struct cm_s *cm, int watsoncrick, char ***ret_aseqs, AINFO *ainfo); /* from dbviterbi.c */ extern int ViterbiScan(struct istate_s *icm, int statenum, char *seq, int window, double thresh, int (*gotone_f)(int, int, double)); /* from debug.c */ extern char *UstatetypeName(int ustatetype); extern char *StatetypeName(int statetype); extern char *NodetypeName(int nodetype); extern void PrintViterbiAMX(FILE *fp, struct istate_s *icm, int statenum, char *seq, int N, int ***amx); extern void PrintTrace(FILE *fp, struct trace_s *tr); extern void PrintAli(FILE *fp, struct align_s *ali); extern void PrintICM(FILE *fp, struct cm_s *cm, struct istate_s *icm, int nstates); /* * from emit.c * * Generate sequences from a CVHMM */ extern int EmitSequence(struct cm_s *cm, int watsoncrick, struct align_s **ret_ali, char **ret_khseq, char **ret_seq); extern int EmitBestSequence(struct cm_s *cm, int watsoncrick, struct align_s **ret_ali, char **ret_khseq, char **ret_seq); /* * from fastmodelmaker.c */ extern int Fastmodelmaker(char **aseqs, AINFO *ainfo, int nseq, struct prior_s *prior, double gapthresh, double *ret_secinfo, struct cm_s **ret_cm, struct trace_s **ret_mtr); /* from fast-dbviterbi.c */ extern int FastViterbiScan(struct istate_s *icm, int statenum, int *minb, int *maxb, char *seq, int window, double thresh, int (*gotone_f)(int, int, double)); /* * from konings.c * * ASCII representation of structures and structural alignments */ extern int Align2kh(struct align_s *ali, char **ret_aseq, char **ret_khseq); extern int PrintAliLandscape(FILE *fp, struct cm_s *cm, struct align_s *ali); extern void Trace2KHS(struct trace_s *tr, char *seq, int rlen, int watsoncrick, char **ret_ss); extern int KHS2ct(char *ss, int len, int allow_pknots, int **ret_ct); extern int IsRNAComplement(char sym1, char sym2, int allow_gu); /* * from lengthdist.c */ extern void LengthDistribution(struct pstate_s *pcm, int statenum, int N, double ***ret_lmx); extern void LengthBounds(double **lmx, int statenum, int N, double epsilon, int **ret_min, int **ret_max); /* * from maxmodelmaker.c */ extern int Maxmodelmaker(char **aseqs, AINFO *ainfo, int nseq, double gapthresh, struct prior_s *prior, double *ret_ssinfo, struct cm_s **ret_cm, struct trace_s **ret_mtr); /* * from misc.c */ extern int SymbolIndex(char sym); extern int PrepareSequence(char *seq); /* * from model.c */ extern struct cm_s *AllocCM(int nodes); extern void FreeCM(struct cm_s *cm); extern void NormalizeCM(struct cm_s *cm); extern int VerifyCM(struct cm_s *cm); extern int RearrangeCM(struct cm_s *cm, double *rfreq, struct istate_s **ret_icm, int *ret_statenum); extern int MakePCM(struct cm_s *cm, struct pstate_s **ret_pcm, int *ret_statenum); extern void NormalizePCM(struct pstate_s *pcm, int M); /* from modelmaking.c */ extern void NumberMasterTrace(struct trace_s *mtr, int *ret_nodes); extern void TopofyNewCM(struct cm_s *cm, struct trace_s *mtr); extern void Transmogrify(struct trace_s *mtr, char *aseq, struct trace_s **ret_tr, struct trmem_s **ret_pool); extern void EasyModelmaker(char **aseq, AINFO *ainfo, int nseq, struct prior_s *prior, double gapthresh, int use_rf, struct cm_s **ret_cm, struct trace_s **ret_mtr); /* * from prior.c */ extern int DefaultPrior(struct prior_s **ret_prior); extern int WritePrior(FILE *fp, struct prior_s *prior); extern int ReadPrior(FILE *fp, struct prior_s **ret_prior); extern void NormalizePrior(struct prior_s *prior); /* * from probify.c */ extern void ProbifyCM(struct cm_s *cm, struct prior_s *prior); extern void ProbifyTransitionMatrix(double tmx[STATETYPES][STATETYPES],int from_node, int to_node, struct prior_s *prior); extern void ProbifySingletEmission(double emvec[ALPHASIZE], int statetype, struct prior_s *prior); extern void ProbifyPairEmission(double emx[ALPHASIZE][ALPHASIZE], struct prior_s *prior); /* * from save.c */ extern int WriteCM(FILE *fp, struct cm_s *cm); extern int WriteBinaryCM(FILE *fp, struct cm_s *cm); extern int ReadCM(char *filename, struct cm_s **ret_cm); /* from scorestack.c */ extern int ReportScanHit(int left, int right, double score, int (*print_hit)(int,int,double)); /* from smallviterbi.c */ extern int SmallViterbiAlign(struct istate_s *icm, int statenum, char *seq, double *ret_score, struct trace_s **ret_trace); /* * from structs.c * * Implementation of data structures: trees, stacks, and linked lists */ extern int StatetypeIndex(int type); extern int UniqueStatetype(int nodetype, int stidx); extern struct m2ali_s *Init_m2ali(void); extern void Push_m2ali(struct m2ali_s *stack, int nodeidx, int type, struct align_s *after); extern int Pop_m2ali(struct m2ali_s *stack, int *ret_nodeidx, int *ret_type, struct align_s **ret_after); extern void Free_m2ali( struct m2ali_s *stack ); extern struct t2ali_s *Init_t2ali(void); extern void Push_t2ali(struct t2ali_s *stack, struct trace_s *tracenode, struct align_s *after); extern int Pop_t2ali(struct t2ali_s *stack, struct trace_s **ret_tracenode, struct align_s **ret_after); extern void Free_t2ali( struct t2ali_s *stack ); extern struct align_s *Init_align(void); extern struct align_s *Insafter_align(int pos, char sym, char ss, int nodeidx, int type, struct align_s *after); extern void Delafter_align(struct align_s *after); extern void Free_align(struct align_s *head); extern struct intstack_s *InitIntStack(void); extern void PushIntStack(struct intstack_s *stack, int data); extern int PopIntStack(struct intstack_s *stack, int *ret_data); extern int FreeIntStack( struct intstack_s *stack ); /* * from trace.c */ extern void InitTrace(struct trace_s **ret_new, struct trmem_s **ret_pool); extern struct trace_s *AttachTrace(struct trace_s *parent, struct trmem_s *pool, int emitl, int emitr, int nodeidx, int type); extern void FreeTrace(struct trace_s *tr, struct trmem_s *pool); extern void DeleteTracenode(struct trace_s *oldtr, struct trmem_s *pool); extern void InitTracepool(struct trmem_s **ret_pool); extern struct trace_s *PopTracepool(struct trmem_s *pool); extern void FreeTracepool(struct trmem_s *pool); extern struct tracestack_s *InitTracestack(void); extern void PushTracestack(struct tracestack_s *stack, struct trace_s *node); extern struct trace_s *PopTracestack(struct tracestack_s *stack); extern void FreeTracestack(struct tracestack_s *stack); extern int TraceCount(struct cm_s *cm, char *seq, double weight, struct trace_s *tr); extern int TraceCountPrior(struct cm_s *cm, struct prior_s *prior, char *seq, double weight, struct trace_s *tr); extern double TraceScore(struct cm_s *cm, char *seq, struct trace_s *tr); /* * from viterbi.c */ extern int ViterbiAlign(struct istate_s *cm, int statenum, char *seq, double *ret_score, struct trace_s **ret_trace); tRNAscan-SE-2.0/src/scorestack.c0000644000543100007160000001673111672025272015742 0ustar pchanlowelab/* scorestack.c * SRE, Tue Aug 17 09:50:39 1993 * * For unidirectional scanning search procedures, implement * a score reporting system that filters out hits that overlap * with higher-scoring printed scores. * * The simplest rule to use would be to keep a record of the last hit; * on receiving a new hit: 1) if new hit overlaps with last hit and * new hit is higher, replace last with new; 2) if new hit overlaps * with last hit and new hit is lower, ignore new; 3) if new hit * does not overlap with last, report last and assign new to last. * At end, report last. This is essentially the rule used by the * original hmm and cove scanning procedures. * * There is a small weakness in this strategy, in that for three * hits A > B > C which all overlap, only A will be reported; but * although A overlaps B and B overlaps C, A may not overlap C. * (Will this ever happen in reality? I dunno. I don't want to * be surprised.) * * Thus, this more complicated strategy. * Keep a stack of last hits. * On receiving a new hit: * 1) if new overlaps last and new > last, push new onto stack * 2) if new overlaps last and new <= last, ignore new * 3) if new doesn't overlap, resolve stack; start new stack and * push new onto it. * At end: resolve stack. * * Stack resolution: * set "previously reported hit" to -1,-1 so it won't overlap w/ anything * while something is in the stack: * pop top hit off stack * if it overlaps with previously reported hit, continue; * if it doesn't overlap, report it * * Testing overlap: * Given two subsequences with endpoints al,ar and bl, br, * with no other knowledge, we would need to test whether any of * the four endpoints are within the opposing subsequence. * However, because we're scanning unidirectionally, we know * that the new right end is greater than the old right end, * so we only need to test whether the old right end >= new left * end. * * External function: * * ReportScanHit() - report a hit * or, if reported coords are -1,-1, resolve old * stack, cleanup and exit. * */ #include #include #include #ifdef MEMDEBUG #include "dbmalloc.h" #endif #include "squid.h" /* Data structure for the stack of previous hits; * declarations of the functions to manipulate it. */ struct hitstack_s { int left; /* left coord of matched segment */ int right; /* right coord of matched segment */ double score; /* score of match */ struct hitstack_s *nxt; /* pointer to next elem in stack */ }; static struct hitstack_s *init_hitstack(void); static void push_hitstack(struct hitstack_s *hstack,int left,int right, double score); static int pop_hitstack(struct hitstack_s *hstack, int *ret_left, int *ret_right, double *ret_score); static void free_hitstack(struct hitstack_s *hstack); /* Function: ReportScanHit() * * Purpose: Caller reports a hit during a search scan, and * provides a pointer to a function we can call to * print non-overlapping hits. Caller reports * -1,-1 for coords to request cleanup and end. * * Two special cases must be dealt with: * INIT: If the hit stack hasn't been started yet, * we need to initialize it before doing * anything else * END: If coords are -1,-1, we resolve the stack * and cleanup; caller is finished with us * for now. * * Args: left - left coord of hit segment * right - right coord of hit segment * score - score of the hit * print_hit - pointer to a function to print * nonoverlapping hits * * Return: 1 on success, 0 on failure. */ int ReportScanHit(int left, int right, double score, int (*print_hit)(int,int,double)) { static struct hitstack_s *hstack = NULL; /* static local handle; set to NULL on 1st entry */ static int oldright = -1; /* -1 is guaranteed not to overlap w/ first report */ int oldleft; int newleft, newright; double newscore; /* Check whether this is first entry; * init hit stack if so. */ if (hstack == NULL) hstack = init_hitstack(); /* Check whether we have to resolve the old stack: * if caller is reporting it's done (-1,-1 coords), * or if new hit doesn't overlap last stacked hit. */ if (left > oldright || (left == -1 && right == -1)) { /* Stack resolution. */ oldleft = INT_MAX; while (pop_hitstack(hstack, &newleft, &newright, &newscore)) { /* does this hit not overlap w/ previous printed one? */ if (newright < oldleft) { (*print_hit)(newleft, newright, newscore); oldleft = newleft; } } free_hitstack(hstack); hstack = NULL; oldright = -1; /* Start new stack, if not done. */ if (left != -1 || right != -1) { hstack = init_hitstack(); push_hitstack(hstack, left, right, score); oldright = right; } } /* else, they overlap; if new reported score is better than last one, * push new one. We're guaranteed to have something in * the stack, so we can use the score in hstack->nxt->score. * Reset oldright to be the new right edge of the stack, if we add something. */ else if (score > hstack->nxt->score) { push_hitstack(hstack, left, right, score); oldright = right; } /* else, they overlap and the newly reported score * isn't better, so we ignore it. */ return 1; } /* Functions: init_hitstack() * push_hitstack() * pop_hitstack() * free_hitstack() * * Purpose: Implementation of the pushdown stack for * keeping old hit positions and scores. * * The hitstack has a dummy begin element, * so the first legitimate element is * hstack->nxt. The last legitimate element * has a NULL nxt pointer. */ static struct hitstack_s * init_hitstack(void) { struct hitstack_s *hstack; if ((hstack = (struct hitstack_s *) malloc (sizeof(struct hitstack_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); hstack->nxt = NULL; return hstack; } static void push_hitstack(struct hitstack_s *hstack, int left, int right, double score) { struct hitstack_s *new; if ((new = (struct hitstack_s *) malloc (sizeof(struct hitstack_s))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); new->left = left; new->right = right; new->score = score; new->nxt = hstack->nxt; hstack->nxt = new; } static int pop_hitstack(struct hitstack_s *hstack, int *ret_left, int *ret_right, double *ret_score) { struct hitstack_s *old; if (hstack->nxt == NULL) return 0; old = hstack->nxt; hstack->nxt = old->nxt; *ret_left = old->left; *ret_right = old->right; *ret_score = old->score; free(old); return 1; } static void free_hitstack(struct hitstack_s *hstack) { int left, right; double score; while (pop_hitstack(hstack, &left, &right, &score) != 0) ; /* do nothing */ free(hstack); } tRNAscan-SE-2.0/src/maxmodelmaker.c0000644000543100007160000017513111021467304016421 0ustar pchanlowelab/* maxmodelmaker.c - maximum likelihood construction of a covariance model * Tue Aug 31 14:54:35 1993 * * Given a multiple sequence alignment, construct the model * which generates that alignment with maximal likelihood. * Uses a dynamic programming algorithm to assign a score * to the optimal subtree with a "root" node MATP, MATR, MATL, * BEGINL, BEGINR, or BIFURC aligned to matrix cell i,j, * where i and j are column and row positions in a multiple * sequence alignment. The alignment of ROOT to i=0,j=N-1 is * the score of the best model; a traceback from this point * creates the optimal tree structure. The tree structure is * explicitly aligned to the multiple sequence alignment, * so it is trivial to estimate the parameters of the model. * * * */ #include #include #include #include "version.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define MAXINSERT 6 /* maximum INSL or INSR path length between MATP nodes */ /* Structure maxmx_s * * One per cell of the 2D diagonal matrix of the alignment * against itself. */ struct maxmx_s { int sc[NODETYPES-1]; /* scores of assigning each possible node type */ /*** Traceback info: */ short matp_i2; /* matp assignment connects to node ftype at i2,j2 */ short matp_j2; char matp_ftype; short matl_i2; /* matl assignment connects to node ftype at i2,j */ char matl_ftype; short matr_j2; /* matr assignment connects to node ftype at i,j2 */ char matr_ftype; char begl_ftype; /* begl assignment connects to node ftype at i,j */ short begr_i2; /* begr assignment connects to node ftype at i2, j */ char begr_ftype; short bifurc_mid; /* best bifurcation is into i,mid, mid+1,j */ }; static struct maxmx_s **alloc_maxmx(int alen); static void init_maxmx(struct maxmx_s **mmx, int nseq, int alen, struct prior_s *prior, int *mscore, double *gapcount); static void recurse_maxmx(int **aseqsT, float *weights, int alen, int nseq, struct prior_s *prior, int *mscore, double *gapcount, double gapthresh, struct maxmx_s **mmx); static void trace_maxmx(struct maxmx_s **mmx, int alen, struct trace_s **ret_mtr); static void transpose_alignment(char **aseqs, int alen, int nseq, int ***ret_aseqsT); static void singlet_emissions(int **aseqsT, float *weights, int alen,int nseq, struct prior_s *prior, int **ret_mscore, double **ret_gapcount); static int pair_emissioncost(int *coli, int *colj,float *weights, int nseq, struct prior_s *prior); static void frommatp_transtable(int **aseqsT, float *weights, int nseq, int i, int j, int i2, int j2, int *accum_insl, int *accum_insr, double trans[STATETYPES][STATETYPES]); static void frommatl_transtable(int **aseqsT, float *weights, int nseq, int i, int j, int i2, int *accum_insl, double trans[STATETYPES][STATETYPES]); static void frommatr_transtable(int **aseqsT, float *weights, int nseq, int i, int j, int j2, int *accum_insr, double trans[STATETYPES][STATETYPES]); static void frombeginr_transtable(int **aseqsT, float *weights, int nseq, int j, int i2, int *accum_insl, double trans[STATETYPES][STATETYPES]); static void frombeginl_transtable(int **aseqsT, float *weights, int nseq, int i, int j, double trans[STATETYPES][STATETYPES]); static void fromroot_transtable(int **aseqsT, float *weights, int nseq, int i2,int j2, int *accum_insl, int *accum_insr, double trans[STATETYPES][STATETYPES]); static int assign_cell(int i, int j, int symi, int symj); static void to_matp_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]); static void to_matr_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]); static void to_matl_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]); static void to_bifurc_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]); static int dot_score(double *cvec, double *pvec, int veclen); #ifdef DEBUG static void print_mmx(struct maxmx_s **mmx, int alen); static void print_assignments(struct trace_s *mtr, int nseq, int alen, double *gapcount); #endif /* MACROS: copy_transtable() * copy_singlet() * copy_pairwise() * * For speed, we use memcpy() to do the operations, relying * on the fact that C stores 2D arrays in 1D. */ #define copy_transtable(tomx, frommx) memcpy((void *) tomx, (void *) frommx, sizeof(double) * STATETYPES * STATETYPES) #define copy_singlet(tovec, fromvec) memcpy((void *) tovec, (void *) fromvec, sizeof(double) * ALPHASIZE) #define copy_pairwise(tomx, frommx) memcpy((void *) tomx, (void *) frommx, sizeof(double) * ALPHASIZE * ALPHASIZE) /* MACROS: zero_transtable() * zero_singlet() * zero_pairwise() * * For speed, we use memset() to initialize, relying * on the fact that C stores 2D arrays in 1D. Are doubles * really eight 0 bytes when they're == 0.0? */ #define zero_transtable(mx) memset(mx, (char) 0, sizeof(double) * STATETYPES * STATETYPES) #define zero_singlet(vec) memset(vec, (char) 0, sizeof(double) * ALPHASIZE) #define zero_pairwise(mx) memset(mx, (char) 0, sizeof(double) * ALPHASIZE * ALPHASIZE) /* Function: Maxmodelmaker() * * Purpose: Create a maximally likely model structure from a multiple * sequence alignment. * * Args: aseqs - flushed sequence alignment; each seq is 0..alen-1 * ainfo - information about the alignment * nseq - number of sequences * gapthresh - heuristic: fractional occupancy <= a column must be a MAT of some kind * prior - prior probability distributions, and alphabet info * ret_ssinfo - RETURN: total info content of the alignment (may pass NULL) * ret_cm - RETURN: the new covariance model (may pass NULL) * ret_mtr - RETURN: master traceback for aseqs (may pass NULL) * * Return: 1 on success, 0 on failure. * ret_cm is alloc'ed here and must be free'd by the caller. */ int Maxmodelmaker(char **aseqs, AINFO *ainfo, int nseq, double gapthresh, struct prior_s *prior, double *ret_ssinfo, struct cm_s **ret_cm, struct trace_s **ret_mtr) { int **aseqsT; /* transpose of alignment, [1..alen+1][0..nseq-1] */ int *mscore; /* emission scores of single columns as MATR or MATL */ double *gapcount; /* weighted count of gap occurrence in each column */ struct maxmx_s **mmx; /* saved score and traceback pointer matrix */ struct cm_s *cm; /* RETURN: new model */ int nodes; /* size of new model in nodes */ struct trace_s *mtr; /* consensus master traceback */ struct trace_s *tr; /* individual "fake" traceback */ struct trmem_s *pool; /* memory pool for traceback */ int idx; /* counter for sequences */ float *wt; /* array of 0..nseq-1 weights */ double ssinfo; /* information content */ /* Set up an array of sequence weights */ if ((wt = (float *) malloc (sizeof(float) * nseq)) == NULL) Die("malloc failed"); for (idx = 0; idx < nseq; idx++) wt[idx] = (ainfo->sqinfo[idx].flags & SQINFO_WGT) ? ainfo->sqinfo[idx].weight : 1.0; /* Transpose (and shift by 1 column index) aseqs[0..nseq-1][0..alen-1] to * aseqsT[1..alen+1][0..nseq-1]. */ transpose_alignment(aseqs, ainfo->alen, nseq, &aseqsT); /* Pre-calculate expected singlet emission scores for each column; * also, pick up a weighted count of gap occurrences in each column. */ singlet_emissions(aseqsT, wt, ainfo->alen, nseq, prior, &mscore, &gapcount); /* Allocate the scoring matrix. It is j=0..alen rows by i=1..j+1 columns; * i.e., a lower left diagonal matrix for 1..alen, with an extra off-diagonal * (j+1,j) for boundary conditions. */ mmx = alloc_maxmx(ainfo->alen); /* Initialize the off-diagonal (j+1,j) and the diagonal (j,j), to * set our boundary conditions. */ init_maxmx(mmx, nseq, ainfo->alen, prior, mscore, gapcount); /* The heart of the calculation: recursively calculate scores for all * subsequences i..j, and save traceback pointers. */ recurse_maxmx(aseqsT, wt, ainfo->alen, nseq, prior, mscore, gapcount, gapthresh, mmx); #ifdef DEBUG print_mmx(mmx,ainfo->alen); #endif /* Now we know the info content */ ssinfo = (double) (mmx[ainfo->alen][0].sc[MATP_NODE] / INTPRECISION); /* Traceback, constructing a consensus tree. */ trace_maxmx(mmx, ainfo->alen, &mtr); /* PrintTrace(stdout, mtr); */ /* Count nodes in the consensus tree and number them */ NumberMasterTrace(mtr, &nodes); /* Create a new model */ if ((cm = AllocCM(nodes)) == NULL) Die("failed to allocate for new model of %d nodes\n", nodes); TopofyNewCM(cm, mtr); /* For each sequence, construct an individual "fake" traceback * using the master, and count it into the new model. */ for (idx = 0; idx < nseq; idx++) { Transmogrify(mtr, aseqs[idx], &tr, &pool); if (! TraceCount(cm, aseqs[idx], wt[idx], tr)) Die("TraceCount() failed"); FreeTrace(tr, pool); } #ifdef DEBUG printf("Checking model after trace counts\n"); if (! VerifyCM(cm)) Die("Verification fails -- baaaad model\n"); #endif /* And, finally, convert the new model to probabilities. * There. Wasn't that simple? */ ProbifyCM(cm, prior); #ifdef DEBUG printf("Checking model after probify\n"); if (! VerifyCM(cm)) Die("Verification fails -- baaaad model\n"); #endif free(mscore); free(gapcount); Free2DArray(mmx, ainfo->alen+1); Free2DArray(aseqsT, ainfo->alen+2); free(wt); if (ret_mtr != NULL) *ret_mtr = mtr; else FreeTrace(mtr, NULL); if (ret_ssinfo != NULL) *ret_ssinfo = ssinfo; if (ret_cm != NULL) *ret_cm = cm; else FreeCM(cm); return 1; } /* Function: alloc_maxmx() * * Purpose: allocate the storage matrix. It is a lower left diagonal * matrix with inverted indexing, mmx[j][i], i <= j+1. * * Args: alen - width of alignment * * Return: mmx: allocated storage matrix. Can be free'd by Free2DArray(mmx, alen+1). */ static struct maxmx_s ** alloc_maxmx(int alen) { struct maxmx_s **mmx; int i, j, y; if ((mmx = (struct maxmx_s **) malloc ((alen+1) * sizeof(struct maxmx_s))) == NULL) Die("malloc failed"); for (j = 0; j <= alen; j++) if ((mmx[j] = (struct maxmx_s *) malloc ((j+2) * sizeof(struct maxmx_s))) == NULL) Die("malloc failed"); /* Set the whole matrix so that scores are NEGINFINITY and * each cell's traceback pointers point at itself. */ for (j = 0; j <= alen; j++) for (i = 0; i <= j+1; i++) { for (y = 0; y < NODETYPES-1; y++) mmx[j][i].sc[y] = NEGINFINITY; mmx[j][i].matp_i2 = (short) i; mmx[j][i].matp_j2 = (short) j; mmx[j][i].matp_ftype = (char) MATP_NODE; mmx[j][i].matl_i2 = (short) i; mmx[j][i].matl_ftype = (char) MATL_NODE; mmx[j][i].matr_j2 = (short) j; mmx[j][i].matr_ftype = (char) MATR_NODE; mmx[j][i].begl_ftype = (char) BEGINL_NODE; mmx[j][i].begr_i2 = (short) i; mmx[j][i].begr_ftype = (char) BEGINR_NODE; mmx[j][i].bifurc_mid = (short) i; } return mmx; } /* Function: init_maxmx() * * Purpose: Initialize the scoring matrix. The offdiagonal j+1,j and the * diagonal j,j are initialized. * * In the offdiagonal, we use BIFURC to represent END, and set * its score to zero. * * In the diagonal, it doesn't matter whether we use MATL or * MATR to generate single symbols; we use MATL for an implementation- * specific reason (if we use MATR, we need an extra row for i=0,j=-1) * MATL's get calculated scores and traceback pointers to * (j+1,j,END). BEGINL, BEGINR are also calculated here. * MATR, MATP, BIFURC are left at NEGINFINITY. * * Args: mmx: saved score/traceback pointer matrix * nseq: number of sequences in alignment * alen: number of columns in alignment * prior: prior probability distributions * mscore: singlet emission costs for each column * gapcount: weighted counts of gaps in each column * * Return: (void). maxmx() is initialized. */ static void init_maxmx(struct maxmx_s **mmx, int nseq, int alen, struct prior_s *prior, int *mscore, double *gapcount) { int j; int fromstate, tostate; double trans[STATETYPES][STATETYPES]; /* state transition matrix */ /* Do the offdiagonal (j+1,j). * set BIFURC/END alignment costs to zero. * Everything else is left at -oo. */ for (j = 0; j <= alen; j++) mmx[j][j+1].sc[END_NODE] = 0; /* Do the diagonal (j,j). * MATL is calculated; MATR is the same; then BEGINL, BEGINR are calculated. */ for (j = 1; j <= alen; j++) { /* Make a transition matrix for MATL -> END for this (j,j) */ for (fromstate = 0; fromstate < STATETYPES; fromstate++) for (tostate = 0; tostate < STATETYPES; tostate++) trans[fromstate][tostate] = 0.0; trans[MATL_ST][END_ST] = (double) nseq - gapcount[j]; trans[DEL_ST][END_ST] = gapcount[j]; ProbifyTransitionMatrix(trans, MATL_NODE, END_NODE, prior); /* Score = sum P(j | MATL) + sum T(END | j,j,(DEL|MATL)) * Set traceback pointers. */ mmx[j][j].sc[MATL_NODE] = mscore[j] + (int) (INTPRECISION * ((log(trans[MATL_ST][END_ST]) * ((double) nseq - gapcount[j])) + (log(trans[DEL_ST][END_ST]) * gapcount[j])) ); mmx[j][j].matl_i2 = j+1; mmx[j][j].matl_ftype = END_NODE; /* MATR_NODE scores are exactly the same as MATL_NODE on * the diagonal */ mmx[j][j].sc[MATR_NODE] = mmx[j][j].sc[MATL_NODE]; mmx[j][j].matr_j2 = j-1; mmx[j][j].matr_ftype = END_NODE; /* Calculate BEGINL -> MATL; * set traceback pointer. */ for (fromstate = 0; fromstate < STATETYPES; fromstate++) for (tostate = 0; tostate < STATETYPES; tostate++) trans[fromstate][tostate] = 0.0; trans[BEGIN_ST][MATL_ST] = (double) nseq - gapcount[j]; trans[BEGIN_ST][DEL_ST] = gapcount[j]; ProbifyTransitionMatrix(trans, BEGINL_NODE, MATL_NODE, prior); mmx[j][j].sc[BEGINL_NODE] = mmx[j][j].sc[MATL_NODE] + (int) (INTPRECISION * ((log(trans[BEGIN_ST][MATL_ST]) * ((double) nseq - gapcount[j])) + (log(trans[BEGIN_ST][DEL_ST]) * gapcount[j])) ); mmx[j][j].begl_ftype = MATL_NODE; /* Make a transition matrix for BEGINR -> MATL for this (j,j) */ for (fromstate = 0; fromstate < STATETYPES; fromstate++) for (tostate = 0; tostate < STATETYPES; tostate++) trans[fromstate][tostate] = 0.0; trans[BEGIN_ST][DEL_ST] = gapcount[j]; trans[BEGIN_ST][MATL_ST] = (double) nseq - gapcount[j]; ProbifyTransitionMatrix(trans, BEGINR_NODE, MATL_NODE, prior); /* Score for (j,j,BEGINR_NODE), and set traceback pointers */ mmx[j][j].sc[BEGINR_NODE] = mmx[j][j].sc[MATL_NODE] + (int) (INTPRECISION * ((log(trans[BEGIN_ST][MATL_ST]) * ((double) nseq - gapcount[j])) + (log(trans[BEGIN_ST][DEL_ST]) * gapcount[j])) ); mmx[j][j].begr_i2 = j; mmx[j][j].begr_ftype = MATL_NODE; } } /* Function: recurse_maxmx() * * Purpose: Recursion calculations of the maximum likelihood CM construction * algorithm. * * Args: aseqsT - transposed alignment; [1..alen+1][0..nseq-1] * weights - weights assigned to each sequence, usually 1.0 * alen - number of columns in alignment * nseq - number of aseqs * prior - structure containing prior probability distributions * mscore - singlet match emission costs * mmx - scoring matrix we fill in; mmx[j][i], lower diagonal * * Return: (void). mmx is filled with scores and traceback pointers. */ static void recurse_maxmx(int **aseqsT, float *weights, int alen, int nseq, struct prior_s *prior, int *mscore, double *gapcount, double gapthresh, struct maxmx_s **mmx) { int **insl_accum; /* accumulated INSL counts for all starting positions, all seqs */ int **insr_accum; /* accumulated INSR counts for all starting positions, all seqs */ double tmaster[STATETYPES][STATETYPES]; /* master copy of state transition table, counts */ double tcounts[STATETYPES][STATETYPES]; /* state transition table, counts */ double tmx[STATETYPES][STATETYPES]; /* state transition probabilities post-regularization */ int tonode; /* node type to connect to */ int i,j; /* current cell column, row */ int i2, j2; /* i', j': cell to connect to */ int idx; /* counter for sequences */ int sc; /* temp variable holding a score */ int mid; /* midpoint for a bifurcation */ if ((insr_accum = (int **) malloc ((alen+1) * sizeof(int *))) == NULL || (insl_accum = (int **) malloc ((alen+2) * sizeof(int *))) == NULL) Die("malloc failed"); for (i = 0; i <= alen; i++) if ((insr_accum[i] = (int *) malloc (nseq * sizeof(int))) == NULL) Die("malloc failed"); for (i = 0; i <= alen+1; i++) if ((insl_accum[i] = (int *) malloc (nseq * sizeof(int))) == NULL) Die("malloc failed"); gapthresh *= (double) nseq; /* scale gapthresh to be comparable to counts in gapcount array */ /* Initialize insr_accum. (Vertical, j insertion accumulator) * insr_accum contains, for each sequence, a count of how many symbols * must be inserted to get from any row fromj to the current row (exclusive * of fromj and the current column). * insr_accum is therefore [0..alen-1][0..nseq-1] */ for (j2 = 1; j2 <= alen; j2++) for (idx = 0; idx < nseq; idx++) insr_accum[j2][idx] = 0; for (idx = 0; idx < nseq; idx++) if (aseqsT[1][idx] >= 0) insr_accum[0][idx] = 1; for (j = 2; j <= alen; j++) { /* Initialize insl_accum (horizontal, i insertion) array each time we start * a new row. insl_accum contains, for each sequence, how many symbols * must be inserted to get from any column i2 to the current column, * exclusive. insl_accum is therefore [1..alen+1][0..nseq] */ for (i2 = 1; i2 <= j+1; i2++) for (idx = 0; idx < nseq; idx++) insl_accum[i2][idx] = 0; for (idx = 0; idx < nseq; idx++) if (aseqsT[j][idx] >= 0) insl_accum[j+1][idx]++; for (i = j-1; i > 0; i--) { /* BIFURC: explain i,j as sum of i,mid,BEGINL + mid+1,j,BEGINR * i <= mid <= j */ for (mid = i; mid <= j; mid++) { sc = mmx[mid][i].sc[BEGINL_NODE] + mmx[j][mid+1].sc[BEGINR_NODE]; if (sc > mmx[j][i].sc[BIFURC_NODE]) { mmx[j][i].sc[BIFURC_NODE] = sc; mmx[j][i].bifurc_mid = mid; } } /* MATP: Score subsequence i,j, given that i,j are emitted by MATP * Look at all possible connections i'j': i < i' < j, i < j' < j, * i' <= j'+1 * Could be i < i' <= j' < j: the extra i' <= j'+1 condition * allows for checking all the ways of generating i'..j' * as entirely insertion, and we may just as well define a * default... */ for (j2 = j-1; j2 >= i && j - j2 - 1 <= MAXINSERT ; j2--) /* for (j2 = j-1; j2 >= i; j2--) */ { for (i2 = i+1; i2 <= j2+1 && i2 - i - 1 <= MAXINSERT; i2++) /* for (i2 = i+1; i2 <= j2+1; i2++) */ { if (mmx[j2][i2].sc[MATP_NODE] < mmx[j][i].sc[MATP_NODE] && mmx[j2][i2].sc[MATL_NODE] < mmx[j][i].sc[MATP_NODE] && mmx[j2][i2].sc[MATR_NODE] < mmx[j][i].sc[MATP_NODE] && mmx[j2][i2].sc[BIFURC_NODE] < mmx[j][i].sc[MATP_NODE]) continue; frommatp_transtable(aseqsT, weights, nseq, i,j, i2, j2, insl_accum[i2], insr_accum[j2], tmaster); for (tonode = 0; tonode < 4; tonode++) { if (i2 > j2 && tonode != BIFURC_NODE) continue; if (i2 == j2 && tonode == MATP_NODE) continue; if (mmx[j2][i2].sc[tonode] < mmx[j][i].sc[MATP_NODE]) continue; switch (tonode) { case MATP_NODE: to_matp_transtable(tmaster, tcounts); break; case MATL_NODE: to_matl_transtable(tmaster, tcounts); break; case MATR_NODE: to_matr_transtable(tmaster, tcounts); break; case BIFURC_NODE: to_bifurc_transtable(tmaster, tcounts); break; default: Die("Gotcha. MATP, MATL, MATR, BIFURC nodes must be numbered 0..3"); } copy_transtable(tmx, tcounts); ProbifyTransitionMatrix(tmx, MATP_NODE, tonode, prior); sc = dot_score((double *) tcounts, (double *) tmx, STATETYPES*STATETYPES) + mmx[j2][i2].sc[tonode]; if (sc > mmx[j][i].sc[MATP_NODE]) { mmx[j][i].sc[MATP_NODE] = sc; mmx[j][i].matp_i2 = i2; mmx[j][i].matp_j2 = j2; mmx[j][i].matp_ftype = tonode; } } if (gapcount[i2] <= gapthresh) break; } if (gapcount[j2] <= gapthresh) break; } mmx[j][i].sc[MATP_NODE] += pair_emissioncost(aseqsT[i], aseqsT[j], weights, nseq, prior); /* MATR: i,j is accounted for by emitting j and connecting * to some i,j2. */ for (j2 = j-1; j2 >= i-1; j2--) { if (mmx[j2][i].sc[MATP_NODE] < mmx[j][i].sc[MATR_NODE] && mmx[j2][i].sc[MATL_NODE] < mmx[j][i].sc[MATR_NODE] && mmx[j2][i].sc[MATR_NODE] < mmx[j][i].sc[MATR_NODE] && mmx[j2][i].sc[BIFURC_NODE] < mmx[j][i].sc[MATR_NODE]) continue; frommatr_transtable(aseqsT, weights, nseq, i, j, j2, insr_accum[j2], tmaster); for (tonode = 0; tonode < 4; tonode++) { if (i > j2 && tonode != BIFURC_NODE) continue; if (i == j2 && tonode == MATP_NODE) continue; if (mmx[j2][i].sc[tonode] < mmx[j][i].sc[MATR_NODE]) continue; switch (tonode) { case MATP_NODE: to_matp_transtable(tmaster, tcounts); break; case MATL_NODE: to_matl_transtable(tmaster, tcounts); break; case MATR_NODE: to_matr_transtable(tmaster, tcounts); break; case BIFURC_NODE: to_bifurc_transtable(tmaster, tcounts); break; default: Die("Gotcha. MATP, MATL, MATR, BIFURC nodes must be numbered 0..3"); } copy_transtable(tmx, tcounts); ProbifyTransitionMatrix(tmx, MATR_NODE, tonode, prior); sc = dot_score((double *) tcounts, (double *) tmx, STATETYPES*STATETYPES) + mmx[j2][i].sc[tonode]; if (sc > mmx[j][i].sc[MATR_NODE]) { mmx[j][i].sc[MATR_NODE] = sc; mmx[j][i].matr_j2 = j2; mmx[j][i].matr_ftype = tonode; } } if (gapcount[j2] <= gapthresh) break; } mmx[j][i].sc[MATR_NODE] += mscore[j]; /* MATL: account for i,j by emitting i and connecting to some (i2,j) */ for (i2 = i+1; i2 <= j+1; i2++) { if (mmx[j][i2].sc[MATP_NODE] < mmx[j][i].sc[MATL_NODE] && mmx[j][i2].sc[MATL_NODE] < mmx[j][i].sc[MATL_NODE] && mmx[j][i2].sc[MATR_NODE] < mmx[j][i].sc[MATL_NODE] && mmx[j][i2].sc[BIFURC_NODE] < mmx[j][i].sc[MATL_NODE]) continue; frommatl_transtable(aseqsT, weights, nseq, i, j, i2, insl_accum[i2], tmaster); for (tonode = 0; tonode < 4; tonode++) { if (i2 > j && tonode != BIFURC_NODE) continue; if (i2 == j && tonode == MATP_NODE) continue; if (mmx[j][i2].sc[tonode] < mmx[j][i].sc[MATL_NODE]) continue; switch (tonode) { case MATP_NODE: to_matp_transtable(tmaster, tcounts); break; case MATL_NODE: to_matl_transtable(tmaster, tcounts); break; case MATR_NODE: to_matr_transtable(tmaster, tcounts); break; case BIFURC_NODE: to_bifurc_transtable(tmaster, tcounts); break; default: Die("Gotcha. MATP, MATL, MATR, BIFURC nodes must be numbered 0..3"); } copy_transtable(tmx, tcounts); ProbifyTransitionMatrix(tmx, MATL_NODE, tonode, prior); sc = dot_score((double *) tcounts, (double *) tmx, STATETYPES*STATETYPES) + mmx[j][i2].sc[tonode]; if (sc > mmx[j][i].sc[MATL_NODE]) { mmx[j][i].sc[MATL_NODE] = sc; mmx[j][i].matl_i2 = i2; mmx[j][i].matl_ftype = tonode; } } if (gapcount[i2] <= gapthresh) break; } mmx[j][i].sc[MATL_NODE] += mscore[i]; /* bump insl_accum: add column i to horizontal accumulator as insertion. */ for (i2 = i+1; i2 <= j+1; i2++) for (idx = 0; idx < nseq; idx++) if (aseqsT[i][idx] >= 0) insl_accum[i2][idx]++; /* BEGINR: has an INSL state, so it can connect to any * (i2,j) *inclusive* of (i,j) -- that's why we just bumped * the insl_accum insert counters */ for (i2 = i; i2 <= j+1; i2++) { if (mmx[j][i2].sc[MATP_NODE] < mmx[j][i].sc[BEGINR_NODE] && mmx[j][i2].sc[MATL_NODE] < mmx[j][i].sc[BEGINR_NODE] && mmx[j][i2].sc[MATR_NODE] < mmx[j][i].sc[BEGINR_NODE] && mmx[j][i2].sc[BIFURC_NODE] < mmx[j][i].sc[BEGINR_NODE]) continue; frombeginr_transtable(aseqsT, weights, nseq, j, i2, insl_accum[i2], tmaster); for (tonode = 0; tonode < 4; tonode++) { if (i2 > j && tonode != BIFURC_NODE) continue; if (i2 == j && tonode == MATP_NODE) continue; if (mmx[j][i2].sc[tonode] < mmx[j][i].sc[BEGINR_NODE]) continue; switch (tonode) { case MATP_NODE: to_matp_transtable(tmaster, tcounts); break; case MATL_NODE: to_matl_transtable(tmaster, tcounts); break; case MATR_NODE: to_matr_transtable(tmaster, tcounts); break; case BIFURC_NODE: to_bifurc_transtable(tmaster, tcounts); break; default: Die("Gotcha. MATP, MATL, MATR, BIFURC nodes must be numbered 0..3"); } copy_transtable(tmx, tcounts); ProbifyTransitionMatrix(tmx, BEGINR_NODE, tonode, prior); sc = dot_score((double *) tcounts, (double *) tmx, STATETYPES*STATETYPES) + mmx[j][i2].sc[tonode]; if (sc > mmx[j][i].sc[BEGINR_NODE]) { mmx[j][i].sc[BEGINR_NODE] = sc; mmx[j][i].begr_i2 = i2; mmx[j][i].begr_ftype = tonode; } } if (gapcount[i2] <= gapthresh) break; } /* BEGINL: has no inserts, so must connect to (i,j) */ frombeginl_transtable(aseqsT, weights, nseq, i, j, tmaster); for (tonode = 0; tonode < 4; tonode++) { if (mmx[j][i].sc[MATP_NODE] < mmx[j][i].sc[BEGINL_NODE] && mmx[j][i].sc[MATL_NODE] < mmx[j][i].sc[BEGINL_NODE] && mmx[j][i].sc[MATR_NODE] < mmx[j][i].sc[BEGINL_NODE] && mmx[j][i].sc[BIFURC_NODE] < mmx[j][i].sc[BEGINL_NODE]) continue; switch (tonode) { case MATP_NODE: to_matp_transtable(tmaster, tcounts); break; case MATL_NODE: to_matl_transtable(tmaster, tcounts); break; case MATR_NODE: to_matr_transtable(tmaster, tcounts); break; case BIFURC_NODE: to_bifurc_transtable(tmaster, tcounts); break; default: Die("Gotcha. MATP, MATL, MATR, BIFURC nodes must be numbered 0..3"); } copy_transtable(tmx, tcounts); ProbifyTransitionMatrix(tmx, BEGINL_NODE, tonode, prior); sc = dot_score((double *) tcounts, (double *) tmx, STATETYPES*STATETYPES) + mmx[j][i].sc[tonode]; if (sc > mmx[j][i].sc[BEGINL_NODE]) { mmx[j][i].sc[BEGINL_NODE] = sc; mmx[j][i].begl_ftype = tonode; } } } /* end loop over columns i */ /* bump insr_accum: add row j to vertical accumulator as insertion. */ for (j2 = 0; j2 < j; j2++) for (idx = 0; idx < nseq; idx++) if (aseqsT[j][idx] >= 0) insr_accum[j2][idx]++; } /* end loop over rows j */ /* Termination. ROOT can connect anywhere. * We hack here: ROOT alignment info is stored in the cell mmx[alen][0] * (otherwise, the i==0 column is unused), and score/traceback info is kept as if * for MATP_NODE (because ROOT and MATP have similar traceback requirements, * since they permit inserts on both sides.) * */ for (j2 = alen; j2 >= 0; j2--) { for (i2 = 1; i2 <= j2+1; i2++) { if (mmx[j2][i2].sc[MATP_NODE] < mmx[alen][0].sc[MATP_NODE] && mmx[j2][i2].sc[MATL_NODE] < mmx[alen][0].sc[MATP_NODE] && mmx[j2][i2].sc[MATR_NODE] < mmx[alen][0].sc[MATP_NODE] && mmx[j2][i2].sc[BIFURC_NODE] < mmx[alen][0].sc[MATP_NODE]) continue; fromroot_transtable(aseqsT, weights, nseq, i2, j2, insl_accum[i2], insr_accum[j2], tmaster); for (tonode = 0; tonode < 4; tonode++) { if (i2 > j2 && tonode != BIFURC_NODE) continue; if (i2 == j2 && tonode == MATP_NODE) continue; if (mmx[j2][i2].sc[tonode] < mmx[alen][0].sc[MATP_NODE]) continue; switch (tonode) { case MATP_NODE: to_matp_transtable(tmaster, tcounts); break; case MATL_NODE: to_matl_transtable(tmaster, tcounts); break; case MATR_NODE: to_matr_transtable(tmaster, tcounts); break; case BIFURC_NODE: to_bifurc_transtable(tmaster, tcounts); break; default: Die("Gotcha. MATP, MATL, MATR, BIFURC nodes must be numbered 0..3"); } copy_transtable(tmx, tcounts); ProbifyTransitionMatrix(tmx, ROOT_NODE, tonode, prior); sc = dot_score((double *) tcounts, (double *) tmx, STATETYPES*STATETYPES) + mmx[j2][i2].sc[tonode]; if (sc > mmx[alen][0].sc[MATP_NODE]) { mmx[alen][0].sc[MATP_NODE] = sc; mmx[alen][0].matp_i2 = i2; mmx[alen][0].matp_j2 = j2; mmx[alen][0].matp_ftype = tonode; } } if (gapcount[i2] <= gapthresh) break; } if (gapcount[j2] <= gapthresh) break; } Free2DArray(insr_accum, alen+1); Free2DArray(insl_accum, alen+2); } /* Function: trace_maxmx() * * Purpose: Traceback of the filled matrix. Constructs a consensus * tree structure. The trace_s structures are only partially * used: emitl and emitr hold 0..alen-1 column coords of emitted * columns (even if not responsible for the emission); nodeidx * is unused; type holds a *node* type, not a state type. * * Note that the alignment of ROOT_NODE has been stored in * mmx[alen][0] like a MATP_NODE, due to some convenient * hacking by the recursion routine. * * The mmx[] scoring matrix traceback pointers are 1..alen coords. * They have to be converted to 0..alen-1 for the traceback tree. * * Args: mmx - filled scoring matrix: mmx[j][i], lower diagonal * alen - width of alignment * ret_mtr - RETURN: master (consensus) traceback * * Return: (void). ret_mtr must be free'd by the caller. */ static void trace_maxmx(struct maxmx_s **mmx, int alen, struct trace_s **ret_mtr) { struct trace_s *mtr; /* master (consensus) traceback */ struct trace_s *curr_mtr; /* current node on traceback tree */ struct tracestack_s *dolist; /* pushdown stack for traversing mtr */ int i,j; /* coords to connect to, next trace ssegment */ int nxti, nxtj; InitTrace(&mtr, NULL); dolist = InitTracestack(); /* Initialization. First attach a root node. Then, trace first segment, * attach it, and start the tracestack to-do list with it. */ curr_mtr = AttachTrace(mtr, NULL, 0, alen-1, 0, ROOT_NODE); PushTracestack(dolist, AttachTrace(curr_mtr, NULL, mmx[alen][0].matp_i2 -1, mmx[alen][0].matp_j2 -1, 0, mmx[alen][0].matp_ftype)); while ((curr_mtr = PopTracestack(dolist)) != NULL) { i = curr_mtr->emitl + 1; /* i,j are 1..alen */ j = curr_mtr->emitr + 1; /* avoid dummy END node on trace tree leaves, and * avoid tracing back from off-diagonal */ if (curr_mtr->nxtl == NULL || i > j) continue; switch (curr_mtr->type) { case MATP_NODE: nxti = mmx[j][i].matp_i2 - 1; nxtj = mmx[j][i].matp_j2 - 1; if (nxti <= nxtj) PushTracestack(dolist, AttachTrace(curr_mtr, NULL, nxti, nxtj, 0, mmx[j][i].matp_ftype)); else { curr_mtr->nxtl->emitl = nxti; curr_mtr->nxtl->emitr = nxtj; } break; case MATL_NODE: nxti = mmx[j][i].matl_i2 - 1; nxtj = j-1; if (nxti <= nxtj) PushTracestack(dolist, AttachTrace(curr_mtr, NULL, nxti, nxtj, 0, mmx[j][i].matl_ftype)); else { curr_mtr->nxtl->emitl = nxti; curr_mtr->nxtl->emitr = nxtj; } break; case MATR_NODE: nxti = i-1; nxtj = mmx[j][i].matr_j2 -1; if (nxti <= nxtj) PushTracestack(dolist, AttachTrace(curr_mtr, NULL, nxti, nxtj, 0, mmx[j][i].matr_ftype)); else { curr_mtr->nxtl->emitl = nxti; curr_mtr->nxtl->emitr = nxtj; } break; case BIFURC_NODE: /* BIFURC must attach right side first */ PushTracestack(dolist, AttachTrace(curr_mtr, NULL, mmx[j][i].bifurc_mid, j -1, 0, BEGINR_NODE)); PushTracestack(dolist, AttachTrace(curr_mtr, NULL, i -1, mmx[j][i].bifurc_mid -1, 0, BEGINL_NODE)); break; case BEGINL_NODE: nxti = i-1; nxtj = j-1; if (nxti <= nxtj) PushTracestack(dolist, AttachTrace(curr_mtr, NULL, nxti, nxtj, 0, mmx[j][i].begl_ftype)); else { curr_mtr->nxtl->emitl = nxti; curr_mtr->nxtl->emitr = nxtj; } break; case BEGINR_NODE: nxti = mmx[j][i].begr_i2 - 1; nxtj = j-1; if (nxti <= nxtj) PushTracestack(dolist, AttachTrace(curr_mtr, NULL, nxti, nxtj, 0, mmx[j][i].begr_ftype)); else { curr_mtr->nxtl->emitl = nxti; curr_mtr->nxtl->emitr = nxtj; } break; default: Die("Invalid node type %d", curr_mtr->type); } } FreeTracestack(dolist); *ret_mtr = mtr; } /* Function: transpose_alignment() * * Purpose: Alignments are indexed [seqidx][position]; it turns out to * be more convenient here to index them as [position][seqidx], * because of memory access patterns. This transpose also * lets us switch to a 1..alen indexing scheme for the alignment * columns, from 0..alen-1; this is important for implementing * boundary conditions properly in the scoring matrix. And * finally, we store the symbols as indices to save time in * further lookups: -1 for gaps, 0..3 for ACGU (or 0..19 for aminos) * * Args: aseqs - flushed sequence alignment, each seq indexed 0..alen-1 * alen - number of columns in alignment * nseq - number of sequences * prior - contains alphabet info * ret_aseqsT - RETURN: transposed alignment, [1..alen][0..nseq-1] * * Return: (void). ret_aseqsT is malloc'ed here and must be free'd * by caller. */ static void transpose_alignment(char **aseqs, int alen, int nseq, int ***ret_aseqsT) { int **aseqsT; int acol; int seqidx; if ((aseqsT = (int **) malloc ((alen+2) * sizeof(int *))) == NULL) Die("malloc failed"); for (acol = 0; acol <= alen+1; acol++) if ((aseqsT[acol] = (int *) malloc (nseq * sizeof(int))) == NULL) Die("malloc failed"); /* "guard" columns 0 and alen+1 */ for (seqidx = 0; seqidx < nseq; seqidx++) { aseqsT[0][seqidx] = -1; aseqsT[alen+1][seqidx] = -1; } /* gaps are assigned value -1 in aseqsT */ for (seqidx = 0; seqidx < nseq; seqidx++) for (acol = 0; acol < alen; acol++) aseqsT[acol+1][seqidx] = isgap(aseqs[seqidx][acol]) ? -1 : SymbolIndex(aseqs[seqidx][acol]); *ret_aseqsT = aseqsT; } /* Function: singlet_emissions() * * Purpose: Count emission statistics for all the columns of * a multiple alignment; calculate and return an * array of emission scores for each column emitted * by MATL. (The caller can assume that MATR is scored * the same way.) * * Args: aseqsT - [1..alen][0..nseqs-1] transpose of sequence alignment * weights - weights on sequences (usually just 1.0 for each) * alen - number of columns in alignment * nseq - number of sequences * prior - prior probability distributions, and alphabet info * ret_mscore - RETURN: array of singlet emission costs * ret_gapcount - RETURN: weighted counts of gaps in each column * * Return: (void). ret_mscore is passed back; it is malloc'ed here * and must be free'd by the caller. */ static void singlet_emissions(int **aseqsT, float *weights, int alen, int nseq, struct prior_s *prior, int **ret_mscore, double **ret_gapcount) { double **emcounts; double *gapcount; int *mscore; double emvec[ALPHASIZE]; int i; int idx; int sym; /* Allocations */ if ((emcounts = (double **) malloc ((alen+1) * sizeof(double *))) == NULL || (mscore = (int *) malloc ((alen+1) * sizeof(int))) == NULL || (gapcount = (double *) malloc ((alen+2) * sizeof(double))) == NULL) Die("malloc failed"); for (i = 0; i <= alen; i++) if ((emcounts[i] = (double *) malloc (ALPHASIZE * sizeof(double))) == NULL) Die("malloc failed"); /* Count symbol occurrences in each column */ for (i = 1; i <= alen; i++) { gapcount[i] = 0.0; for (sym = 0; sym < ALPHASIZE; sym++) emcounts[i][sym] = 0.0; for (idx = 0; idx < nseq; idx++) { if (aseqsT[i][idx] >= 0) emcounts[i][aseqsT[i][idx]] += weights[idx]; else gapcount[i] += weights[idx]; } } gapcount[0] = 0.0; gapcount[alen+1] = 0.0; /* For each column, create an emission probability vector, * and calculate score using emcounts. */ for (i = 1; i <= alen; i++) { for (sym = 0; sym < ALPHASIZE; sym++) emvec[sym] = emcounts[i][sym]; ProbifySingletEmission(emvec, uMATL_ST, prior); mscore[i] = dot_score(emcounts[i], emvec, ALPHASIZE); mscore[i] += (nseq - gapcount[i]) * (int) (INTPRECISION * log((float) ALPHASIZE)); } Free2DArray(emcounts, alen+1); *ret_gapcount = gapcount; *ret_mscore = mscore; } /* Function: pair_emissioncost() * * Purpose: Count emission statistics for a given MATP_NODE-assigned * i,j, and assign a cost. * * Args: coli - ptr to column i from aseqsT transposed alignment, [0..nseq-1] * colj - ptr to column j from aseqsT transposed alignment, [0..nseq-1] * weights - weights on sequences (usually just 1.0 for each) * nseq - number of sequences * prior - prior probability distributions * * Return: The cost of emitting the (i,j) column pair (integer). */ static int pair_emissioncost(int *coli, int *colj, float *weights, int nseq, struct prior_s *prior) { double matp_count[ALPHASIZE][ALPHASIZE]; double matl_count[ALPHASIZE]; double matr_count[ALPHASIZE]; double matp_emit[ALPHASIZE][ALPHASIZE]; double matl_emit[ALPHASIZE]; double matr_emit[ALPHASIZE]; int sc; int symi, symj; int idx; /* Zero the counter arrays */ for (symi = 0; symi < ALPHASIZE; symi++) { matr_count[symi] = 0.0; matl_count[symi] = 0.0; for (symj = 0; symj < ALPHASIZE; symj++) matp_count[symi][symj] = 0.0; } /* Count pairs, singlets */ for (idx = 0; idx < nseq; idx++) { if (coli[idx] == -1) { if (colj[idx] == -1) continue; else matl_count[colj[idx]] += weights[idx]; } else if (colj[idx] == -1) matr_count[coli[idx]] += weights[idx]; else matp_count[coli[idx]][colj[idx]] += weights[idx]; } /* Create probability matrices */ copy_singlet(matl_emit, matl_count); copy_singlet(matr_emit, matr_count); copy_pairwise(matp_emit, matp_count); ProbifySingletEmission(matl_emit, uMATL_ST, prior); ProbifySingletEmission(matr_emit, uMATR_ST, prior); ProbifyPairEmission(matp_emit, prior); /* convert probs to log odds */ for (symi = 0; symi < ALPHASIZE; symi++) { matl_emit[symi] *= (double) ALPHASIZE; matr_emit[symi] *= (double) ALPHASIZE; for (symj = 0; symj < ALPHASIZE; symj ++) matp_emit[symi][symj] *= (double) (ALPHASIZE*ALPHASIZE); } /* Score is the sum of dot products of counts and probability matrices */ sc = dot_score((double *) matl_count, (double *) matl_emit, ALPHASIZE) + dot_score((double *) matr_count, (double *) matr_emit, ALPHASIZE) + dot_score((double *) matp_count, (double *) matp_emit, ALPHASIZE*ALPHASIZE); return sc; } /* Function: frommatp_transtable() * * Purpose: Given an starting cell i,j and an ending cell * i',j' (i < i' < j' < j), calculate the * 6x6 transition table between these pairs, * assuming both (i,j) and (i',j') are assigned * to MATP. Transitions to other types of nodes * at i',j' (MATR, MATL, BIFURC) are easily derived from this one. * * Args: aseqsT - transpose of alignment, [1..alen][0..nseq-1] * weights - weights on sequences (usually just 1.0 for each) * nseq - number of sequences * i,j - i,j * i2,j2 - i',j' * accum_insl - (0..nseq-1) array of number of inserted symbols * between i,i' for each sequence * accum_insr - (0..nseq-1) array of number of inserted symbols * between j',j for each sequence * trans[][] - filled in: state transition matrix (counts) * * Return: (void) * trans[][] is filled in. */ static void frommatp_transtable(int **aseqsT, float *weights, int nseq, int i, int j, int i2, int j2, int *accum_insl, int *accum_insr, double trans[STATETYPES][STATETYPES]) { int fy, ty; /* from state index, to state index */ int idx; /* counter for sequences */ /* Zero the counter array */ for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) trans[fy][ty] = 0.0; /* For each sequence: * assign fy, based on symbols vs. gaps at i,j * assign ty, based on symbols vs. gaps at i',j' * use accum_insr and accum_insl and bump counters appropriately. */ for (idx = 0; idx < nseq; idx++) { fy = assign_cell(i,j,aseqsT[i][idx], aseqsT[j][idx]); ty = assign_cell(i2,j2,aseqsT[i2][idx], aseqsT[j2][idx]); if (accum_insl[idx] == 0 && accum_insr[idx] == 0) { trans[fy][ty] += weights[idx]; } else if (accum_insl[idx] > 0) { trans[fy][INSL_ST] += weights[idx]; trans[INSL_ST][INSL_ST] += (accum_insl[idx]-1) * weights[idx]; if (accum_insr[idx] > 0) { trans[INSL_ST][INSR_ST] += weights[idx]; trans[INSR_ST][INSR_ST] += (accum_insr[idx]-1) * weights[idx]; trans[INSR_ST][ty] += weights[idx]; } else { trans[INSL_ST][ty] += weights[idx]; } } else if (accum_insr[idx] > 0) { trans[fy][INSR_ST] += weights[idx]; trans[INSR_ST][INSR_ST] += (accum_insr[idx]-1) * weights[idx]; trans[INSR_ST][ty] += weights[idx]; } } /* end loop over all sequences */ } /* Function: frommatl_transtable() * * Purpose: Given an starting cell i,j assigned to MATL_NODE * and an ending cell i',j (i < i' < j), calculate the * 6x6 transition table between these pairs, * assuming (i',j) is assigned to MATP. * Transitions to other types of nodes * at i',j (MATR, MATL, BIFURC) are easily derived from this one. * * Args: aseqsT - transpose of alignment, [1..alen][0..nseq-1] * weights - weights on sequences (usually just 1.0 for each) * nseq - number of sequences * i,j - i,j * i2 - i' * accum_insl - (0..nseq-1) array of number of inserted symbols * between i,i' for each sequence * trans[][] - filled in: state transition matrix (counts) * * Return: (void) * trans[][] is filled in. */ static void frommatl_transtable(int **aseqsT, float *weights, int nseq, int i, int j, int i2, int *accum_insl, double trans[STATETYPES][STATETYPES]) { int fy, ty; /* from state index, to state index */ int idx; /* counter for sequences */ /* Zero the counter array */ for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) trans[fy][ty] = 0.0; /* For each sequence: * assign fy, based on symbols vs. gaps at i * assign ty, based on symbols vs. gaps at i',j * use accum_insl and bump counters appropriately. */ for (idx = 0; idx < nseq; idx++) { fy = (aseqsT[i][idx] == -1) ? DEL_ST : MATL_ST; ty = assign_cell(i2, j, aseqsT[i2][idx], aseqsT[j][idx]); if (accum_insl[idx] == 0) { trans[fy][ty] += weights[idx]; } else { trans[fy][INSL_ST] += weights[idx]; trans[INSL_ST][INSL_ST] += (accum_insl[idx]-1) * weights[idx]; trans[INSL_ST][ty] += weights[idx]; } } /* end loop over all sequences */ } /* Function: frommatr_transtable() * * Purpose: Given an starting cell i,j assigned to MATR_NODE * and an ending cell i,j' (i < j' < j), calculate the * 6x6 transition table between these pairs, * assuming (i,j') is assigned to MATP. * Transitions to other types of nodes * at i,j' (MATR, MATL, BIFURC) are easily derived from this one. * * Args: aseqsT - transpose of alignment, [1..alen][0..nseq-1] * weights - weights on sequences (usually just 1.0 for each) * nseq - number of sequences * i,j - i,j * j2 - j' * accum_insr - (0..nseq-1) array of number of inserted symbols * between j',j for each sequence * trans[][] - filled in: state transition matrix (counts) * * Return: (void) * trans[][] is filled in. */ static void frommatr_transtable(int **aseqsT, float *weights, int nseq, int i, int j, int j2, int *accum_insr, double trans[STATETYPES][STATETYPES]) { int fy, ty; /* from state index, to state index */ int idx; /* counter for sequences */ /* Zero the counter array */ for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) trans[fy][ty] = 0.0; /* For each sequence: * assign fy, based on symbols vs. gaps at j * assign ty, based on symbols vs. gaps at i,j' * use accum_insr and bump counters appropriately. */ for (idx = 0; idx < nseq; idx++) { fy = (aseqsT[j][idx] == -1) ? DEL_ST : MATR_ST; ty = assign_cell(i, j2, aseqsT[i][idx], aseqsT[j2][idx]); if (accum_insr[idx] == 0) { trans[fy][ty] += weights[idx]; } else { trans[fy][INSR_ST] += weights[idx]; trans[INSR_ST][INSR_ST] += (accum_insr[idx]-1) * weights[idx]; trans[INSR_ST][ty] += weights[idx]; } } /* end loop over all sequences */ } /* Function: frombeginr_transtable() * * Purpose: Given an starting cell i,j assigned to BEGINR_NODE * and an ending cell i',j (i < i' < j), calculate the * 6x6 transition table between these pairs, * assuming (i',j) is assigned to MATP. * Transitions to other types of nodes * at i',j (MATR, MATL, BIFURC) are easily derived from this one. * * Args: aseqsT - transpose of alignment, [1..alen][0..nseq-1] * weights - weights on sequences (usually just 1.0 for each) * nseq - number of sequences * i,j - i,j * i2 - i' * accum_insl - (0..nseq-1) array of number of inserted symbols * between j',j for each sequence * trans[][] - filled in: state transition matrix (counts) * * Return: (void) * trans[][] is filled in. */ static void frombeginr_transtable(int **aseqsT, float *weights, int nseq, int j, int i2, int *accum_insl, double trans[STATETYPES][STATETYPES]) { int fy, ty; /* from state index, to state index */ int idx; /* counter for sequences */ /* Zero the counter array */ for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) trans[fy][ty] = 0.0; /* For each sequence: * assign ty, based on symbols vs. gaps at i',j * use accum_insr and bump counters appropriately. */ fy = BEGIN_ST; for (idx = 0; idx < nseq; idx++) { ty = assign_cell(i2, j, aseqsT[i2][idx], aseqsT[j][idx]); if (accum_insl[idx] == 0) { trans[fy][ty] += weights[idx]; } else { trans[fy][INSL_ST] += weights[idx]; trans[INSL_ST][INSL_ST] += (accum_insl[idx]-1) * weights[idx]; trans[INSL_ST][ty] += weights[idx]; } } /* end loop over all sequences */ } /* Function: frombeginl_transtable() * * Purpose: Given an starting cell i,j assigned to BEGINR_NODE (which must * connect to i,j itself), * calculate the 6x6 transition table between the BEGINR * and the other states in the cell, assuming i,j is * assigned to MATP. * Transitions to other types of nodes * at i,j (MATR, MATL, BIFURC) are easily derived from this one. * * Args: aseqsT - transpose of alignment, [1..alen][0..nseq-1] * weights - weights on sequences (usually just 1.0 for each) * nseq - number of sequences * i,j - i,j * trans[][] - filled in: state transition matrix (counts) * * Return: (void) * trans[][] is filled in. */ static void frombeginl_transtable(int **aseqsT, float *weights, int nseq, int i, int j, double trans[STATETYPES][STATETYPES]) { int fy, ty; /* from state index, to state index */ int idx; /* counter for sequences */ /* Zero the counter array */ for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) trans[fy][ty] = 0.0; /* For each sequence: * assign ty, based on symbols vs. gaps at i',j * use accum_insr and bump counters appropriately. */ fy = BEGIN_ST; for (idx = 0; idx < nseq; idx++) { ty = assign_cell(i, j, aseqsT[i][idx], aseqsT[j][idx]); trans[fy][ty] += weights[idx]; } } /* Function: fromroot_transtable() * * Purpose: Given an ending cell i2,j2, calculate the * 6x6 transition table between 1,alen,ROOT and this pair, * assuming (i',j') is assigned * to MATP. Transitions to other types of nodes * at i',j' (MATR, MATL, BIFURC) are easily derived from this one. * * Args: aseqsT - transpose of alignment, [1..alen][0..nseq-1] * weights - weights on sequences (usually just 1.0 for each) * nseq - number of sequences * i2,j2 - i',j' * accum_insl - (0..nseq-1) array of number of inserted symbols * between i,i' for each sequence * accum_insr - (0..nseq-1) array of number of inserted symbols * between j',j for each sequence * trans[][] - filled in: state transition matrix (counts) * * Return: (void) * trans[][] is filled in. */ static void fromroot_transtable(int **aseqsT, float *weights, int nseq, int i2, int j2, int *accum_insl, int *accum_insr, double trans[STATETYPES][STATETYPES]) { int fy, ty; /* from state index, to state index */ int idx; /* counter for sequences */ /* Zero the counter array */ for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) trans[fy][ty] = 0.0; /* For each sequence: * assign ty, based on symbols vs. gaps at i',j' * use accum_insr and accum_insl and bump counters appropriately. */ for (idx = 0; idx < nseq; idx++) { ty = assign_cell(i2,j2,aseqsT[i2][idx], aseqsT[j2][idx]); if (accum_insl[idx] == 0 && accum_insr[idx] == 0) { trans[BEGIN_ST][ty] += weights[idx]; } else if (accum_insl[idx] > 0) { trans[BEGIN_ST][INSL_ST] += weights[idx]; trans[INSL_ST][INSL_ST] += (accum_insl[idx]-1) * weights[idx]; if (accum_insr[idx] > 0) { trans[INSL_ST][INSR_ST] += weights[idx]; trans[INSR_ST][INSR_ST] += (accum_insr[idx]-1) * weights[idx]; trans[INSR_ST][ty] += weights[idx]; } else { trans[INSL_ST][ty] += weights[idx]; } } else if (accum_insr[idx] > 0) { trans[BEGIN_ST][INSR_ST] += weights[idx]; trans[INSR_ST][INSR_ST] += (accum_insr[idx]-1) * weights[idx]; trans[INSR_ST][ty] += weights[idx]; } } /* end loop over all sequences */ } /* Function: assign_cell() * * Purpose: Given that we assign a cell i,j to MATP for the * whole alignment, return the actual assignment * for the given sequence seq. This will be MATP * if seq has symbols in both columns i,j; * MATL if j is a gap; MATR if i is a gap; * DEL if both i,j are gaps. * * If i == j, assign_cell returns MATP or DEL even though * MATP is not a valid assignment; the to_matr or to_matl functions * straighten this out later. * * Args: i,j : coordinates (columns in alignment) * symi: symbol in position i * symj: symbol in position j * * Return: DEL_ST, MATP_ST, MATR_ST, or MATL_ST */ static int assign_cell(int i, int j, int symi, int symj) { if (i > j) return END_ST; else if (symi >= 0) { if (symj >= 0) return MATP_ST; else return MATL_ST; } else if (symj >= 0) return MATR_ST; else return DEL_ST; } /* Function: to_matp_transtable() * * Purpose: Given a master state transition tables containing * counts, create a table specific for transitions * to an (i',j') assigned to MATP_NODE. * * Args: master_table[][] - the master table containing counts * trans[][] - the new table, returned containing counts * * Return: (void) * trans[][] is filled. */ static void to_matp_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]) { int fy,ty; /* indices for from state, to state */ /* Just copy the table. */ for (fy = 0; fy < STATETYPES; fy++) for (ty = 0; ty < STATETYPES; ty++) trans[fy][ty] = master_table[fy][ty]; } /* Function: to_matr_transtable() * * Purpose: Given a master state transition tables containing * counts, create a table specific for transitions * to an (i',j') assigned to MATR_NODE. * * Args: master_table[][] - the master table containing counts * trans[][] - the new table, returned containing counts * * Return: (void) * trans[][] is filled. */ static void to_matr_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]) { int fy; /* indices for from state, to state */ for (fy = 0; fy < STATETYPES; fy++) { trans[fy][DEL_ST] = master_table[fy][DEL_ST] + master_table[fy][MATL_ST]; trans[fy][MATP_ST] = 0.0; trans[fy][MATL_ST] = 0.0; trans[fy][MATR_ST] = master_table[fy][MATR_ST] + master_table[fy][MATP_ST]; trans[fy][INSL_ST] = master_table[fy][INSL_ST]; trans[fy][INSR_ST] = master_table[fy][INSR_ST]; } } /* Function: to_matl_transtable() * * Purpose: Given a master state transition tables containing * counts, create a table specific for transitions * to an (i',j') assigned to MATL_NODE. * * Args: master_table[][] - the master table containing counts * trans[][] - the new table, returned containing counts * * Return: (void) * trans[][] is filled. */ static void to_matl_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]) { int fy; /* indices for from state, to state */ for (fy = 0; fy < STATETYPES; fy++) { trans[fy][DEL_ST] = master_table[fy][DEL_ST] + master_table[fy][MATR_ST]; trans[fy][MATP_ST] = 0.0; trans[fy][MATL_ST] = master_table[fy][MATL_ST] + master_table[fy][MATP_ST]; trans[fy][MATR_ST] = 0.0; trans[fy][INSL_ST] = master_table[fy][INSL_ST]; trans[fy][INSR_ST] = master_table[fy][INSR_ST]; } } /* Function: to_bifurc_transtable() * * Purpose: Given a master state transition tables containing * counts, create a table specific for transitions * to an (i',j') assigned to BIFURC_NODE. * * Args: master_table[][] - the master table containing counts * trans[][] - the new table, returned containing counts * * Return: (void) * trans[][] is filled. */ static void to_bifurc_transtable(double master_table[STATETYPES][STATETYPES], double trans[STATETYPES][STATETYPES]) { int fy; /* indices for from state, to state */ for (fy = 0; fy < STATETYPES; fy++) { trans[fy][BIFURC_ST] = master_table[fy][DEL_ST] + master_table[fy][MATR_ST] + master_table[fy][MATL_ST] + master_table[fy][MATP_ST]; trans[fy][MATP_ST] = 0.0; trans[fy][MATL_ST] = 0.0; trans[fy][MATR_ST] = 0.0; trans[fy][INSL_ST] = master_table[fy][INSL_ST]; trans[fy][INSR_ST] = master_table[fy][INSR_ST]; } } /* Function: dot_score() * * Purpose: Calculate the dot product of counts by probabilities * for s set of state transitions: i.e. a total score * * Args: cmx: count vector * pmx: probability vector * * Return: score, the dot product, as an integer */ static int dot_score(double *cvec, double *pvec, int veclen) { int i; double score = 0.0; for (i = 0; i < veclen; i++, cvec++, pvec++) if (*pvec > 0.0) score += *cvec * log(*pvec); return ((int) INTPRECISION * score); } #ifdef DEBUG static void print_mmx(struct maxmx_s **mmx, int alen) { int i,j,y; for (j = 0; j <= alen; j++) { for (y = 0; y < NODETYPES-1; y++) { for (i = 0; i <= j+1; i++) printf("%5d ", mmx[j][i].sc[y] * 10 / (int) INTPRECISION); printf("\n"); } puts(""); } } /* Function: print_assignments() * * Purpose: Using a master max likelihood tree constructed from an * alignment, print a line for each column of the alignment: * (column) (fractional occupancy) (assignment) * * The master tree, mtr, is a traceback tree with some of * the fields misused. emitl, emitr contain 0..alen-1 column * coordinates (even if only one of them is emitted by * this tree node). nodeidx is unused. type contains * a node type, not a state type. * * Code partly borrowed from Trace2ali(). */ static void print_assignments(struct trace_s *mtr, int nseq, int alen, double *gapcount) { struct align_s *ali; /* linear list of alignment */ struct t2ali_s *stack; /* stack used to traverse the traceback tr */ struct trace_s *currtr; struct align_s *currali; struct align_s *newafter; struct align_s *oldafter; int currpos; /* First, we generate a linear linked align_s list from the tree. * The align_s structure fields are used as follows: * pos = 0..alen-1 position in alignment * sym = unused * nodeidx = unused * type = node type (e.g. MATP_NODE) */ /* Initialize the linked list for the alignment of sequence to model */ ali = Init_align(); /* Initialize the pushdown stack for traversal of the traceback */ stack = Init_t2ali(); Push_t2ali(stack, mtr->nxtl, ali); while (Pop_t2ali(stack, &currtr, &oldafter)) { if (currtr->nxtl == NULL) continue; /* ignore END nodes */ if (currtr->nxtr != NULL) /* BIFURC node */ { /* deal with right branch; insert a dummy */ newafter = Insafter_align(-1, '-', ' ', 0, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtr, newafter); /* deal with left branch */ Push_t2ali(stack, currtr->nxtl, oldafter); } else{ switch (currtr->type) { case BEGINL_NODE: case BEGINR_NODE: case ROOT_NODE: Push_t2ali(stack, currtr->nxtl, oldafter); break; case MATP_NODE: (void) Insafter_align(currtr->emitr, ' ', ' ', 0, currtr->type, oldafter); newafter = Insafter_align(currtr->emitl, ' ', ' ', 0, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtl, newafter); break; case MATL_NODE: newafter = Insafter_align(currtr->emitl, ' ', ' ', 0, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtl, newafter); break; case MATR_NODE: (void) Insafter_align(currtr->emitr, ' ', ' ', 0, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtl, oldafter); break; case END_NODE: break; default: Die("no such node type %d", currtr->type); } } } Free_t2ali(stack); currpos = 0; for (currali = ali->nxt; currali != NULL; currali = currali->nxt) { currpos++; while (currpos < currali->pos) { printf("%4d %.3f INS\n", currpos, ((double) nseq - gapcount[currpos]) / (double) nseq); currpos++; } switch (currali->type) { case BEGINL_NODE: case BEGINR_NODE: case ROOT_NODE: break; case MATL_NODE: case MATR_NODE: printf("%4d %.3f MAT singlet\n", currali->pos, ((double) nseq - gapcount[currali->pos]) / (double) nseq); break; case MATP_NODE: printf("%4d %.3f MAT pairwise\n", currali->pos, ((double) nseq - gapcount[currali->pos]) / (double) nseq); break; } } while (currpos <= alen) { printf("%4d %.3f INS\n", currpos, ((double) nseq - gapcount[currpos]) / (double) nseq); currpos++; } Free_align(ali); } #endif /* DEBUG */ tRNAscan-SE-2.0/src/revcomp_main.c0000644000543100007160000000447011021467312016246 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* main for revcomp * * revcomp - generate reverse complement of sequences * SRE, Thu Aug 5 17:36:57 1993 */ #include #include #include "squid.h" #define OPTIONS "h" char usage[] = "Usage: revcomp [-options] \n\ Reverse complement a nucleic acid sequence.\n\ Available options:\n\ -h : help; print version and usage info\n"; int main(int argc, char **argv) { char *seqfile; /* name of sequence file */ SQFILE *dbfp; /* open sequence file */ int fmt; /* format of seqfile */ char *seq; /* sequence */ SQINFO sqinfo; /* additional sequence info */ char *rev; /* reverse complement */ int swap; int optchar; /* option character, command line */ extern int optind; /*********************************************** * Parse command line ***********************************************/ while ((optchar = getopt(argc, argv, OPTIONS)) != -1) switch (optchar) { case 'h': printf("revcomp %s, %s\n%s\n", squid_version, squid_date, usage); exit(EXIT_SUCCESS); default: Die("%s\n", usage); } if (argc - optind != 1) Die("%s\n", usage); seqfile = argv[optind]; if (! SeqfileFormat(seqfile, &fmt, NULL)) Die("Failed to determine format of file %s", seqfile); if ((dbfp = SeqfileOpen(seqfile, fmt, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); while (ReadSeq(dbfp, fmt, &seq, &sqinfo)) { if ((rev = (char *) malloc ((sqinfo.len + 1) * sizeof(char))) == NULL) Die("malloc failed"); revcomp(rev, seq); if (sqinfo.flags & (SQINFO_START | SQINFO_STOP)) { swap = sqinfo.start; sqinfo.start = sqinfo.stop; sqinfo.stop = swap; } /* secondary structure of reverse strand is nonsense */ if (sqinfo.flags & SQINFO_SS) { sqinfo.flags = sqinfo.flags & ~SQINFO_SS; free(sqinfo.ss); } WriteSeq(stdout, kPearson, rev, &sqinfo); free(rev); FreeSequence(seq, &sqinfo); } SeqfileClose(dbfp); return 0; } tRNAscan-SE-2.0/src/mpcovels_main.c0000644000543100007160000002741211021467305016426 0ustar pchanlowelab/* mpcovels_main.c * Sun Aug 21 12:25:52 1994 * * main() for MasPar version of covels * */ #include #include #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "squid.h" #include "version.h" #include "maspar.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "cg:ho:t:A:D:" static char usage[] = "\ Usage: mpcovels [-options] \n\ where options are:\n\ -c : do complementary strand too\n\ -g : set background expected GC content (0.5 default)\n\ -h : print short help and version info\n\ -o : save hits in \n\ -t : set score reporting threshold\n\ CRASH PROTECTION OPTIONS:\n\ -A : maintain file of names of active seqs\n\ -D : save names of finished seqs here\n"; static char banner[] = "mpcovels - scan sequences for matches to an RNA covariance model"; extern int MPViterbiScan(struct istate_s *fe_icm, int *fe_statenum, int *fe_threshold, char *fe_buffer); /* Because we do some back-and-forth communication between the * DPU and the front end, I need to make the following variables * available externally to the functions that the DPU calls back to. */ static SQFILE *fp; /* open sequence file */ static int format; /* format of sequence file */ static char **seq; /* array of NYPROC sequences */ static SQINFO *sqinfo; /* array of NYPROC sequence info structures */ static char **sptr; /* ptrs into NYPROC active sequences */ static char *buffer; /* NYPROC blocks of processed seq to go to PE's */ static int moreseqs; /* TRUE if there's still more seqs in the file */ static int morebases; /* TRUE if there's still more bases in **seq */ static int ithresh; /* scaled integer score threshold */ static FILE *ofp; /* output file for scores */ static int do_revcomp; /* TRUE to do reverse complements too */ static int inrev[NYPROC]; /* TRUE if we're doing a revcomp in this row now */ static char *activefile; /* name of active seq file to save to, or NULL */ static FILE *donefp; /* open finished seq name file, or NULL */ int main(int argc, char **argv) { char *seqfile; /* sequence file */ char *cmfile; /* file containing covariance model */ struct cm_s *cm; /* model */ struct istate_s *icm; /* integer log-odds model */ int statenum; /* number of states in icm */ int y; /* counter for rows */ double rfreq[ALPHASIZE]; /* expected background symbol frequencies */ char *outfile; /* save file for scores */ char *donefile; /* save file for finished seq names */ float thresh; /* threshold score for reporting a match */ double gcfrac; /* fraction GC expected background */ int optc; extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ #ifdef MEMDEBUG unsigned long histid1, histid2, orig_size, curr_size; #endif /*********************************************** * Parse command line ***********************************************/ thresh = 0.0; do_revcomp = FALSE; outfile = NULL; activefile = NULL; donefile = NULL; gcfrac = 0.5; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'c': do_revcomp = TRUE; break; case 'g': gcfrac = (double) atof(optarg);break; case 'o': outfile = optarg; break; case 't': thresh = (float) atof(optarg); break; case 'A': activefile = optarg; break; case 'D': donefile = optarg; break; case 'h': printf("%s\n version %s (%s)\n%s\n", banner, RELEASE, RELEASEDATE, usage); exit(0); default: Die("unrecognized option %c\n", optc); } if (argc - optind != 2) Die("%s\n", usage); cmfile = argv[optind]; optind++; seqfile = argv[optind]; /* The random model probabilities */ rfreq[1] = rfreq[2] = gcfrac / 2.0; rfreq[0] = rfreq[3] = (1.0 - gcfrac) / 2.0; ofp = stdout; if (outfile != NULL && (ofp = fopen(outfile, "w")) == NULL) Die("Failed to open output file %s", outfile); donefp = NULL; if (donefile != NULL && (donefp = fopen(donefile, "w")) == NULL) Die("Failed to open finished sequence names file %s", donefile); /*********************************************** * Print banner ***********************************************/ puts(banner); printf(" version %s, %s\n\n", RELEASE, RELEASEDATE); printf("---------------------------------------------------\n"); printf("Database to search/score: %s\n", seqfile); printf("Model: %s\n", cmfile); printf("Reporting threshold: %.2f\n", thresh); if (outfile != NULL) printf("Scores saved to file: %s\n", outfile); printf("Reverse complement too? %s\n", do_revcomp ? "yes" : "no"); printf("---------------------------------------------------\n"); puts(""); /*********************************************** * Get the model, open the sequence database ***********************************************/ if (! ReadCM(cmfile, &cm)) Die("Failed to read model from file %s", cmfile); if (! RearrangeCM(cm, rfreq, &icm, &statenum)) Die("Failed to convert CM to integer log-odds form\n"); if (! SeqfileFormat(seqfile, &format, NULL)) switch (squid_errno) { case SQERR_NOFILE: Die("Sequence file %s could not be opened for reading", seqfile); case SQERR_FORMAT: default: Die("Failed to determine format of sequence file %s", seqfile); } if ((fp = SeqfileOpen(seqfile, format, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); ithresh = (int) (thresh * INTPRECISION); /* Load the first set of sequences */ if ((seq = (char **) malloc (sizeof(char *) * NYPROC)) == NULL || (sqinfo= (SQINFO *) malloc (sizeof(SQINFO) * NYPROC)) == NULL || (sptr = (char **) malloc (sizeof(char *) * NYPROC)) == NULL || (buffer= (char *) malloc (sizeof(char) * (NYPROC * BLOCKSIZE))) == NULL) Die("malloc failed"); moreseqs = TRUE; morebases = TRUE; for (y = 0; y < NYPROC; y++) { if (! moreseqs || ! ReadSeq(fp, format, &seq[y], &(sqinfo[y]))) { moreseqs = FALSE; seq[y] = NULL; } if (seq[y] != NULL) s2upper(seq[y]); sptr[y] = seq[y]; inrev[y] = FALSE; } /* Call the parallel scanning function. * It will load the model up, then immediately call us * back and ask us to prepare the first block of sequence data. * We tell it where the sequence data is by passing the address of buffer. */ callRequest(MPViterbiScan, 16, icm, &statenum, &ithresh, buffer); /* Cleanup and exit */ free(seq); free(sqinfo); free(sptr); free(buffer); SeqfileClose(fp); fclose(ofp); if (donefp != NULL) fclose(donefp); return 0; } /* Function: NextSequenceBlock() * * Purpose: Prepare a sequence buffer for the DPU. * The buffer consists of NYPROC blocks of size BLOCKSIZE. * The values are 0,1,2,3 for A,C,G,U, or 4 for no seq. * If we return 1, the DPU blockIn()'s this buffer. * If we return 0, the DPU concludes that the search is complete. * * Note: * There's some intricacy below, so be careful what you muck with. * These next two functions are written carefully to make sure that * sqinfo[y] is still valid for the hits that are reported to * DPUReportsHit(). This has the following consequences: * 1) NextSequenceBlock() must make sure that there's only one * sequence in a BLOCKSIZE. It must wait for the next block * to start sending a new sequence. * 2) Moreover, it's got to make sure that the terminating '\0' * was part of the block -- so the DPU can clean up and report * the final hit on that sequence *before* we free it and its * info. Hence, the delayed FreeSequence() call here. * * This results in some inefficiency, since we can't start new sequences * until the next block. */ int NextSequenceBlock(void) { int changed; /* TRUE if active sequence list changed */ int y, pos; char *rev; /* Load new sequences if we have to. */ morebases = FALSE; changed = FALSE; for (y = 0; y < NYPROC; y++) { /* where we have a seq, but now we're * done with it... * free the old seq, load a new one */ if (seq[y] != NULL && sptr[y] == NULL) { if (do_revcomp && !inrev[y]) { if ((rev = (char *) malloc (sizeof(char) * (sqinfo[y].len + 1))) == NULL) Die("malloc failed"); if (revcomp(rev, seq[y]) == NULL) Die("revcomp failed"); free(seq[y]); seq[y] = sptr[y] = rev; inrev[y] = TRUE; changed = TRUE; } else { if (donefp != NULL) /* save name to finished seq file */ { fprintf(donefp, "%s\n", sqinfo[y].name); fflush(donefp); } FreeSequence(seq[y], &sqinfo[y]); if (! moreseqs || ! ReadSeq(fp, format, &seq[y], &sqinfo[y])) { moreseqs = FALSE; seq[y] = NULL; } if (seq[y] != NULL) s2upper(seq[y]); sptr[y] = seq[y]; inrev[y] = FALSE; changed = TRUE; } } if (seq[y] != NULL) morebases = TRUE; } if (morebases == FALSE) return 0; /* Construct a new block of sequence data for the DPU to blockIn(). */ for (y = 0; y < NYPROC; y++) { for (pos = 0; pos < BLOCKSIZE; pos++) { if (seq[y] == NULL || sptr[y] == NULL) buffer[y * BLOCKSIZE + pos] = 4; else if (*(sptr[y]) == '\0') { buffer[y * BLOCKSIZE + pos] = 4; sptr[y] = NULL; /* signal that we're done w/ this seq */ } else { buffer[y * BLOCKSIZE + pos] = SymbolIndex(*(sptr[y])); sptr[y] ++; } } } /* crash protection: maintain list of active names */ if (changed == TRUE && activefile != NULL) { FILE *actfp; if ((actfp = fopen(activefile, "w")) == NULL) Die("failed to open active sequence name list file %s", activefile); for (y = 0; y < NYPROC; y++) fprintf(actfp, "%s\n", sqinfo[y].name); fclose(actfp); } return 1; } /* Function: DPUReportsHit() * * Purpose: The DPU is reporting one or more hits (up to NYPROC). * The easiest thing to do is to blockIn() from *all* * NYPROC rows, and find what rows actually have real * hits here. */ int DPUReportsHit(int *dpu_seeme, int *dpu_i, int *dpu_j, int *dpu_score) { int seeme[NYPROC]; /* TRUE if we're reporting in this row */ int start[NYPROC]; int end[NYPROC]; int score[NYPROC]; int y; blockIn(dpu_seeme, seeme, 0, 0, 1, NYPROC, sizeof(int)); blockIn(dpu_i, start, 0, 0, 1, NYPROC, sizeof(int)); blockIn(dpu_j, end, 0, 0, 1, NYPROC, sizeof(int)); blockIn(dpu_score, score, 0, 0, 1, NYPROC, sizeof(int)); for (y = 0; y < NYPROC; y++) if (seeme[y]) { if (inrev[y]) fprintf(ofp, "%6.2f %5d %5d : %s %s\n", (float) score[y] / INTPRECISION, sqinfo[y].len - start[y], sqinfo[y].len - end[y], sqinfo[y].name, (sqinfo[y].flags & SQINFO_DESC) ? sqinfo[y].desc : ""); else fprintf(ofp, "%6.2f %5d %5d : %s %s\n", (float) score[y] / INTPRECISION, start[y] + 1, end[y] + 1, sqinfo[y].name, (sqinfo[y].flags & SQINFO_DESC) ? sqinfo[y].desc : ""); fflush(ofp); } return 1; } tRNAscan-SE-2.0/src/eufind_const.h0000644000543100007160000000232411021467303016250 0ustar pchanlowelab /* tRNA scanning cutoffs */ #define BBOX_CUTOFF -14.14 #define BBOX_START_IDX 45 #define SEC_LOBOUND -4.9 /* orig: -3.6 euk: -3.8 prok (hflu) -4.9 */ #define SEC_HIBOUND -2.1 /* -2.2 */ #define MAX_PENALTY -5.442 /* log(1/231) */ #define INT_SCORE_THRESH -31.25 #define TOT_SCORE_THRESH -31.8 /* -31.8 */ #define MAX_AB_BOX_DIST 140 /* not used anymore, instead /* AB_BOX_DIST_RANGE used */ #define MIN_AB_BOX_DIST 24 #define AB_BOX_DIST_RANGE 116 /* check this far over MIN_AB_BOX /* distance for A-B box pairs */ #define SEC_AB_BOX_DIST 26 #define SEC_BBOX_DIST_CORR 12 #define MIN_BTERM_DIST 11 #define MAX_TERM_SEARCH 133 /* Max distance to search for termination signal (was 59, changed to 133 (as in Pavesi paper) on 11/96 since was missing 4 yeast tRNAs */ #define ABOX_LEN 21 #define BBOX_LEN 11 #define MAX_OVLAP 10 /* max #bp tRNA hits are allowed to overlap */ struct trna_info_s { char iso_type[5]; char acodon[4]; int start, end, Abox_st, Abox_end, Abox_gap, Bbox_st, Bbox_end, Term_st, acodon_idx, intron, idno; float totSc, AboxSc, BboxSc, ABdistSc, TermSc; }; typedef struct trna_info_s TRNA_TYPE; tRNAscan-SE-2.0/src/trnascan.c0000644000543100007160000017553013210443477015416 0ustar pchanlowelab/* * Copyright, 1991, The Regents of the University of California. * This software was produced by the Los Alamos National Laboratory, * which is operated by the University of California for the United * States Department of Energy under contract W-7405-ENG-36. The * U. S. Government is licensed to use, reproduce, and distribute * this software. Permission is granted to the public to copy and * use this software without charge, provided that this Notice and * any statement of authorship are reproduced on all copies. * Neither the Government nor the University makes any warranty, * express or implied, or assumes any liability or responsibility * for the use of this software. */ #define PROGRAM "trnascan" #define RELEASE "1.4 (Feb 96)" #define DERIV_VERSION "1.3 (Oct 91)" #define BRIEF "'Identification of tRNA genes in genomic DNA'" #define CITATION "Fichant and Burks, J. Mol. Biol. (1991) 220:659-671." #define MODIF "(modified & optimized for use in tRNAscan-SE package by T. Lowe 2/96)" /* Modified by T. Lowe 11/95 */ /* Changes: 1) Search parameters named in #define constants 2) Print statements added to help trace progress of search - VERBOSE constant must be defined Trace statements sent to "tscan.verb.out" 3) Bug that caused program to crash on any non-ACGT sequence characters fixed 4) fgetseq() modified to correctly read in fasta sequences 5) compstrand() modified to increase efficiency & getseqsize() added to allow input sequences of any length (memory allowing) 6) Numerous calls to strlen(sequence) eliminated for efficiency 7) Calls to myindex() function eliminated - replaced by in-line switch statements for efficiency 8) basepairings() function rewritten for efficiency 9) program ANSI-fied to allow compilation with gcc 10) Fixed bug: indexing out of 'ntab' array bounds causing unpredictable side-effects ** Modifications result in over 200-fold speed increase ** -T. Lowe 9/2000 added "-i" option to allow alternate start of sequence nuc numbering */ /* #define NO_AMBIG -use this option to eliminate conservative * calling of 'N's as base pairing matches * in tRNAs (this gives more false positives) */ static char banner[] = "trnascan: scan a sequence for tRNAs"; char usage[] = "\n\ Usage: trnascan [-options] \n\ where supported options are:\n\ -s : use original tRNAscan 1.3 parameters (default)\n\ -r : use relaxed search parameters (used with tRNAscan-SE)\n\ -a : use alternate (user-set) search parameters\n\ -c : suppress credits\n\ -o : write results to \n\ -i : start sequence numbering at (def=1)\n\ -h : print (this) short help message\n\n"; #include #include #include #include #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define TRUE 1 #define FALSE 0 #ifndef TSCANDIR #define TSCANDIR "/usr/local/lib/trnascan" #endif #define MAXLINE 1000 /* max input seq line length */ #define BUF_SIZE 100 /* extra room added onto allocated sequence */ /* over that determined by getseqsize() */ #define MAX(x,y) (((x) > (y)) ? (x) : (y)) /* #define VERBOSE */ /* Original version 1.3 default parameters */ #define ST_SG_CUTOFF 5 /* general score (SG) cutoff */ #define ST_TPC_SIG_THRESH 0.40 /* TPC signal sequence matrix score */ /* cutoff */ #define ST_D_SIG_THRESH 0.40 /* D signal sequence matrix score cutoff */ #define ST_TPC_INV 2 /* Number of TPC matrix invariant bases */ /* allowed NOT to be invariant */ #define ST_TPC_INCSG 5 /* Number of base pairs required in TPC */ /* stem to increment general score */ #define ST_TPC_KEEP 4 /* Number of base pairs required in TPC */ /* stem to keep trna as a candidate */ #define ST_D_INV 1 /* Number of D matrix invariant bases */ /* allowed NOT to be invariant */ #define ST_LOOK_FOR_ACLOOP_SG 4 /* Minimum SG required to begin looking */ /* for anticodon loop */ #define ST_ACLOOP_MIN 4 /* Minimum base pairs required in */ /* anticodon loop */ #define ST_AA_INCSG 7 /* Number of base pairs in Amino acyl */ /* stem needed to increment SG */ #define ST_AA_KEEP 6 /* Number of base pairs in Amino acyl */ /* stem needed to keep tRNA candidate */ /* "Relaxed" parameters - used by default with */ /* tRNAscan-SE program. Makes tRNAscan into */ /* rough pre-filter for Covariance tRNA prediction */ /* program by S. Eddy */ #define RX_SG_CUTOFF 5 #define RX_TPC_SIG_THRESH 0.40 #define RX_D_SIG_THRESH 0.30 #define RX_TPC_INV 2 #define RX_TPC_INCSG 4 #define RX_TPC_KEEP 2 #define RX_D_INV 2 #define RX_LOOK_FOR_ACLOOP_SG 3 #define RX_ACLOOP_MIN 3 #define RX_AA_INCSG 5 #define RX_AA_KEEP 4 /* "Alternate" params - for experimenting */ /* with other param values */ #define ALT_SG_CUTOFF 4 #define ALT_TPC_SIG_THRESH 0.40 #define ALT_D_SIG_THRESH 0.30 #define ALT_TPC_INV 2 #define ALT_TPC_INCSG 4 #define ALT_TPC_KEEP 2 #define ALT_D_INV 2 #define ALT_LOOK_FOR_ACLOOP_SG 3 #define ALT_ACLOOP_MIN 3 #define ALT_AA_INCSG 6 #define ALT_AA_KEEP 4 #define MIN_VAR_LOOP 28 /* Minimum variable loop size, assumes min */ /* intron length = 8bp */ #define MAX_INTRON_LEN 60 /* Maximum allowable intron length */ #define MIN_SEQ_LEN 70 /* Minimum length of sequence that will be */ /* for tRNAs */ #define STRICT_PARAMS 1; #define RELAXED_PARAMS 2; #define ALT_PARAMS 3; typedef struct pset { float tpc_sig_thresh, d_sig_thresh; int sg_cutoff, tpc_inv, tpc_incsg, tpc_keep, d_inv, look_for_acloop_sg, acloop_min, aa_incsg, aa_keep; } Param_set_type; Param_set_type ps; void set_search_params (Param_set_type *ps, int params); /* Subroutine that accomplishes the end of the test for the presence of a tRNA gene */ void following_search(long int pos, /* first position of the found T-Psi-C signal */ long int pos1, /* first position of the found D signal */ char *ptr1, /* pointer to the first position of the D signal */ char *ptr3, /* ptr3=ptr1+2 pointer to first position of the D arm */ int lpair, int nloop, /*nloop=0 test of the sequence, */ /*nloop=1 test of the complementary sequence */ char *sequence, long int seqlen, FILE *fpo, /*pointer to the output file */ FILE *fpverb, char *name, int score, /* Value of the general score SG */ int match2, /* integer testing the presence of D */ /* arm with 3 base-pairings */ int *ntrna, int *npred, int *match, long int sqoffset /* offset nucleotide numbering by this much (set with -i param) */ ); /* Subroutine to read the consensus matrix */ void lectval(FILE *fp, /* pointer to the consensus matrix file */ float (*table_cons)[4], /* table containing the frequency of each base at each position of the signal */ int (*table_inv)[2], /* table containing the position and the nature of the invariant bases found in the signal. Code for the bases: A=0, C=1, G=2 and T=3. */ int *lsig, /*lsig=length of the signal */ int *ktot, /* ktot= number of invariant bases */ float *maxtot /* maxtot= sum of the maximum frequencies */ ); /* Subroutine reading the sequence */ /* Modified to correctly read FASTA sequence files */ int fgetseq(char *name, /* string w/name of the sequence */ char *sequence, /* character string containing the sequence */ long int *seqlen, /* length of sequence */ FILE *fpi); /* input file pointer */ /* Subroutine reading & returning the sequence length */ int getseqsize(FILE *fpi); /* input file pointer */ /* Subroutine looking for the presence of a given signal, returns 1 if a signal is found and 0 otherwise. It also return the table 'weight' containing the frequencies of the oberved bases in the windowed sequence and the number 'ninv' of invariant bases found in the windowed sequence*/ int readsignal(char *ptr, /* pointer to the sequence */ int (*table_inv)[2], /* table containing the position and nature of the invariant bases found in the consensus matrix */ int *lsig, /* lsig= length of the signal */ int *ktot, /* ktot= number of invariant bases in the consensus matrix */ float *weight, /* table containing the frequencies of the observed base at each position of the windowed sequence tested */ float (*table_cons)[4], /* table corresponding to the consensus matrix */ int *ninv, /* ninv= number of invariant */ /* bases in the windowed sequence */ int threshold_inv); /* Number of invariant bases */ /* allowed not to b e invariant */ /* Subroutine that calculates the similarity score on the potential signal previously retained by the subroutine readsignal. This subroutine returns 1 it the computed score is greater or equal to the defined threshold and 0 otherwise. It returns also the value of the computed score (score) */ int scoring(float *weight, /* table containing the frequencies of the observed base at each position of the potential signal */ int lsig, /* length of the signal */ float max, /* sum of the maximum frequencies found in */ /* the consensus matrix */ int ktot, /* number of invariant bases found in the consensus matrix */ float *score, /* value of the computed score on the potential signal */ float ThresholdValue, /* defined threshold for the similarity score */ int ninv /* number of invariant bases found in the potential signal */ ); /* Subroutine looking for base-pairings between two parts of the sequence. It returns the number of base-pairings found (ncomp) */ void basepairing(char *ptr, /* pointer to the sequence */ int npair, /* number of base-pairings forming a given arm */ int lpair, /* number of nucleotides found between the first position of the first part of the sequence involved in the stem and the last position of the second part of the sequence involved in the stem */ int *ncomp /* number of base-pairings observed between the two parts of the sequence tested */ ); /* Subroutine that complements the sequence. It returns the complementary sequence to the main */ void compstrand(char **sequence, /* pointer to the sequence string */ long int seqlen /* sequence length */ ); /* Subroutine that codes the anticodon signal sequence by a number comprised between 1 and 65. It returns this number. */ void codage(char *anticodon, /* anticodon signal sequence */ int length1, /* length of the anticodon signal, lenght1=3 */ int *num /* number associated to the anticodon signal sequence */ ); /* Subroutine that determines the tRNA gene family */ void corresaa(int num, /* Number coding the anticodon signal sequence */ char *type_trna /* tRNA gene family */ ); /* Subroutine that prints the results of the search */ void printresult(FILE *fpo, /* output file pointer */ FILE *fpverb, /* character string for the name of the sequence */ char *name, long int pos1, /* first position of the D signal */ long int pos, /* first position of the T-Psi-C signal */ int lpair, /* number of nucleotides between the */ /* first position of the D arm and the last one */ int lpair1, /* number of nucleotides between the first position of the aminoacyl arm and the last one */ int lpair2, /* number of nucleotides between the first position of the anticodon arm and the last one */ int nloop, /* nloop=0, scanning of the direct strand; nloop=1 scanning of the complementary strand */ int *ntrna, /* number of tRNA genes predicted in the sequence */ char *chaine2, /* character string for the predicted tRNA gene sequence */ char *sequence, /* character string containing the sequence tested */ long int length, /* length of the sequence */ int *match, /* match=1 if at least one tRNA gene has been found on the direct strand and 0 otherwise */ int ncomp, /* number of base-pairings in the anticodon arm of the predicted tRNA gene */ char *type_trna, /* character string for the tRNA gene family */ char *anticodon, /* character string for the anticodon signal sequence */ long int sqoffset /* offset nucleotide numbering by this much (set with -i param) */ ); main(int argc, char **argv) { /* pointers to the different files fpi=input file, fpo=output file, fpcons1= T-Psi-C matrix file, fpcons2= D matrix file */ extern Param_set_type ps; /* search parameters */ FILE *fpi,*fpo,*fpcons1,*fpcons2, *fpverb; /* lsig1= length of the T-Psi-C signal, lsig2= length of the D signal ktot1= number of invariant bases in the T-Psi-C signal ktot2= number of invariant bases in the D signal */ int lsig1=0, lsig2=0, ktot1=0, ktot2=0; long int pos,pos1, begin; /* start position of the T-Psi-C signal (pos) and D signal (pos1) and of the search for the D signal (begin) */ int npair=0, lpair=0; /* variables used to test the presence of a stem, see definition further in the program */ float table_cons1[30][4]; /* table containing the frequency of each base at each position of the T-Psi-C signal */ float table_cons2[30][4]; /* table containing the frequency of each base at each position of the D signal */ float maxtot1=0, maxtot2=0; /* sum of the maximum frequencies found in the T-Psi-C matrix (maxtot1) and in the D matrix (maxtot2) */ float weight1[30]; /* table containing the frequency of the observed base at each position of the windowed sequence tested (T-Psi-C matrix) */ float weight2[30]; /* table containing the frequency of the observed base at each position of the windowed sequence tested (D matrix) */ int table_inv1[30][2]; /* table containing the position and the nature of the invariant bases found in the T-Psi-C matrix */ int table_inv2[30][2]; /* table containing the position and the nature of the invariant bases found in the D matrix */ int ntab[5][2]; /* table containing for each potential D arm found in the windowed sequence, the number of base-pairings and the number of nucleotides that separates the first position of the D arm and the last one */ char *sequence; /* character string containing the sequence */ long int seqlen; /* keeps the length of the current sequence */ long int sqoffset=0; /* start numbering nucleotides by this offset (def=0) */ char *ptr,*ptr1,*ptr3, *ptrstart; /* pointers to the sequence, their definitions are given at the place they are used in the program */ char name[80]; /* character string containing the name of the sequence */ char tscan_dir[120]; /* holds name of directory of consensus files */ int ntrna; /* number of tRNA genes predicted in the sequence and its complement */ int npred=0; /* Total number of tRNA genes predicted in the sequences of the input file */ int nseq=0; /* Number of sequences tested (number of sequences of the input file) */ long int lseq=0; /* Number of nucleotides tested */ int score; /* variable corresponding to the general score SG */ int ninv=0; /* number of invariant bases oberved in the windowed sequence for each signal */ int ncomp=0; /* number of base-pairings observed in the sequence tested for the presence of one of the four arms */ int threshold_inv; /* number of invariant bases that are allowed not to be invariant */ int match; /* if at least one tRNA gene is predicted of the direct strand, match=1, if no tRNA gene is found on the direct strand, match=0 */ int first_score=0,match2,h, nloop; /* ThresholdValue1= threshold value of the similarity score used to retain a T-Psi-C signal ThresholdValue2= threshold value of the similarity score used to retain a D signal Changing the threshold value of the similarity score, MODIFY '0.4' in the following line. */ float ThresholdValue1, ThresholdValue2; float score1=0, score2=0; int i,j; int params; int suppress_credits; /* flag for display of credits */ char *seqfile, /* name of input sequence file */ *outfile, /* name of output file (if not sent to stdout) */ *verbfile; /* name of file for verbose output */ int optc; extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ /*********************************************** * Parse command line ***********************************************/ suppress_credits = FALSE; params = STRICT_PARAMS; outfile = NULL; verbfile = NULL; while ((optc = getopt(argc, argv, "csraho:v:i:")) != -1) switch (optc) { case 'c': suppress_credits = TRUE; break; case 's': params = STRICT_PARAMS; break; case 'r': params = RELAXED_PARAMS; break; case 'a': params = ALT_PARAMS; break; case 'o': outfile = optarg; break; case 'v': verbfile = optarg; break; case 'i': sqoffset = atoi(optarg)-1; break; case 'h': printf("%s\n version %s\n%s\n", banner, RELEASE, usage); exit(0); default: fprintf(stderr,"unrecognized option %c\n", optc); exit(1); } if (argc - optind != 1) { fprintf(stderr,"%s\n", usage); exit(1); } seqfile = argv[argc-1]; /* open the sequence file */ if ((fpi=fopen(seqfile,"r")) == NULL) { fprintf(stderr,"tRNAscan1.4: FATAL: Cannot open the input sequence file %s\n",seqfile); exit(1); } /* open the output file */ if (outfile == NULL) { fpo = stdout; } else if ((fpo=fopen(outfile,"w")) == NULL) { fprintf(stderr,"tRNAscan1.4: FATAL: Cannot open the output file %s\n",outfile); exit(1); } /* open Verbose output file */ if (verbfile != NULL) if ((fpverb=fopen(verbfile,"w")) == NULL) { fprintf(stderr,"tRNAscan1.4: Cannot open verbose output file %s\n",verbfile); exit(1); } /* open the consensus matrix file for the T-Psi-C signal */ strcpy(tscan_dir,TSCANDIR); if (((fpcons1=fopen("TPCsignal","r")) == NULL) && ((fpcons1=fopen(strcat(tscan_dir,"/TPCsignal"),"r")) == NULL)) { fprintf(stderr,"tRNAscan1.4: main cannot open TPCsignal consensus file\n"); exit(1); } /* open the consensus matrix file for the D signal */ strcpy(tscan_dir,TSCANDIR); if (((fpcons2=fopen("Dsignal","r")) == NULL) && ((fpcons2=fopen(strcat(tscan_dir,"/Dsignal"),"r")) == NULL)) { fprintf(stderr,"tRNAscan1.4: main cannot open Dsignal consensus file\n"); exit(1); } /* Set search parameters */ set_search_params(&ps,params); ThresholdValue1 = ps.tpc_sig_thresh; ThresholdValue2 = ps.d_sig_thresh; /* Credits */ if (!suppress_credits) { printf("\n %s %s -- derived from version %s\n", PROGRAM, RELEASE, DERIV_VERSION); printf("\n Please cite: %s\n %s\n", BRIEF,CITATION); printf(" %s\n\n",MODIF); } /* reading the two consensus file */ lectval(fpcons1,table_cons1,table_inv1,&lsig1,&ktot1,&maxtot1); lectval(fpcons2,table_cons2,table_inv2,&lsig2,&ktot2,&maxtot2); /* main loop for reading & analyzing one sequence at a time */ while (!feof(fpi)) { /* find out sequence size before allocating memory & reading in */ seqlen = getseqsize(fpi); sequence= (char *) calloc (seqlen+BUF_SIZE,sizeof(char)); if (sequence == NULL ) { fprintf(stderr,"tRNAscan1.4: Can't malloc for sequence\n"); exit(-1); } /* reading the name of the sequence and the sequence from the input file */ if (fgetseq(name,sequence,&seqlen,fpi) == 0) break; nseq++; lseq += seqlen; match=0; for (nloop=0; nloop <=1; nloop++) { /* if the sequence is shorter than 70 bp long it is skipped */ if (seqlen < MIN_SEQ_LEN) break; ntrna=0; /* search of tRNA genes starts pos= first position of the T-Psi-C signal ptr= pointer to the first position of the T-Psi-C signal */ for (pos=44, ptr=(sequence+43); pos= 3 (ktot1=4) change in the threshold of the T-Psi-C signal for the increment of SG, MODIFY the following line */ if (ninv >= ktot1-1) { score++; #ifdef VERBOSE fprintf(fpverb,"+ TPC invariant bp: %d. SG++\n",ninv); } else { fprintf(fpverb,"X TPC invariant bp: %d. NO SG++\n",ninv); #endif } /* Computation of the score on the found T-Psi-C signal, signal retains if the computed score is >= ThresholdValue1 */ if(scoring(weight1,lsig1,maxtot1,ktot1,&score1,ThresholdValue1, ninv)) { #ifdef VERBOSE fprintf(fpverb,"+ TPC signal over thresh: %f\n",score1); #endif /* npair= number of base-pairings in the T-Psi-C stem lpair= number of nucleotides between the first position of the T-Psi-C arm and the last position of the T-Psi-C arm */ npair = 5; lpair = 16; /* Test for the presence of the T-Psi-C stem */ basepairing(ptr+1,npair,lpair,&ncomp); /* If the number of base-pairings (ncomp) equal 5, SG (score) incremented by 1. Change in the threshold of base-pairings in the T-Psi-C arm for the increment of SG, MODIFY the value '5' in the following line */ if (ncomp >= ps.tpc_incsg) { score++; #ifdef VERBOSE fprintf(fpverb,"+ TPC parings (%d) add to SG=%d\n",ncomp,score); } else { fprintf(fpverb,"X TPC parings (%d) NO add to SG=%d\n",ncomp,score); #endif } /* Change in the threshold to retain a stem as a potential T-Psi-C arm, MODIFY the value '4' in the following line */ #ifdef VERBOSE if (ncomp < ps.tpc_keep) { fprintf(fpverb,"X TPC parings retain loop: %d\n",ncomp); } else { fprintf(fpverb,"+ TPC parings retain loop: %d\n",ncomp); #else if (ncomp >= ps.tpc_keep) { #endif /* For the same found T-Psi-C region, different potential D region can be found because of the possible different lengthes of the D loop. As the search for the tRNA gene is applied for each potential D arm, the value of SG computed on the T-Psi-C region is stored in 'first_score' */ first_score=score; /*Change in the number of invariant bases to be present in the D signal, MODIFY the value of threshold_inv here */ threshold_inv= ps.d_inv; /* Search for the presence of a D region between -120 and -37 nucleotides upstream from the found T-Psi-C region. 37 nucleotides is the observed minimum length assuming no insertion in the D and variable loop. 120 nucleotides allows for an intron of up to 60 nucleotides. Change in the length of the intron, MODIFY the value '120' in the definition of begin and ptrstart. ptr1= pointer to the first position of the D signal pos1= first position of the D signal begin= starting position for the search of the D signal ptrsart= pointer to the starting position for the search of the D signal */ /* If the sequence does not have 127 nucleotides upstream of the T-Psi-C signal, the search for the D signal starts at position 8 */ if (pos <=127) { begin = 8; ptrstart = sequence+7; } else { begin = pos-(MAX_INTRON_LEN+60); ptrstart = ptr-(MAX_INTRON_LEN+60); } for(pos1=begin,ptr1=ptrstart; pos1<=(pos-37);pos1++, ptr1++) { /* Search for the D signal */ #ifdef VERBOSE if(!readsignal(ptr1,table_inv2,&lsig2,&ktot2,weight2, table_cons2,&ninv,threshold_inv)) { fprintf(fpverb,"X D invariant bp: %d\n",ninv); } else { fprintf(fpverb,"+ D invariant bp: %d\n",ninv); #else if(readsignal(ptr1,table_inv2,&lsig2,&ktot2,weight2, table_cons2,&ninv,threshold_inv)) { #endif /* Number of invariant bases found in the windowed sequence equal to the number of invariant bases of the matrix (ktot2=3), then SG (score) is incremented by 1 Change in the increment of SG for the D signal, MODIFY the following line */ if (ninv >= ktot2) { score++; #ifdef VERBOSE fprintf(fpverb,"+ D invariant (%d) inc SG\n",ninv); } else { fprintf(fpverb,"X D invariant (%d) NO add to SG\n",ninv); #endif } /* Computation of the score on the found D signal, signal retains if the computed score is >= TresholdValue2 */ #ifdef VERBOSE if(!scoring(weight2,lsig2,maxtot2,ktot2,&score2, ThresholdValue2,ninv)) { fprintf(fpverb,"X D signal threshold: %f\n",score2); } else { fprintf(fpverb,"+ D signal threshold: %f\n",score2); #else if(scoring(weight2,lsig2,maxtot2,ktot2,&score2, ThresholdValue2,ninv)) { #endif /* ptr3= pointer pointing on the first position of the D arm npair= number of base-pairings in the D stem lpair= number of nucleotides between the first position of the D arm and the last one. As the D loop presents some variation in length, lpair can take different values: lpair=14 smallest length of the D loop lpair=18 greatest length of the D loop */ ptr3=ptr1+2; npair = 3; for (i=0; i < 5; i++) for (j=0; j < 2; j++) ntab[i][j]=0; for (lpair=14,h=0; lpair <=18; lpair++,h++) { /* Search for the presence of the D arm */ basepairing(ptr3,npair,lpair,&ncomp); /* For each potential stem found, the number of base-pairings (ncomp) and lpair are stored in ntab */ ntab[h][0]=ncomp; ntab[h][1]=lpair; } match2=0; for (h=0; h < 5;h++) { /* If stems with 3 base-pairings are found for the D arm, the following steps of the algorithm are applied on each of these potential stems. The 2 base-pairings stems are discarded */ if (ntab[h][0] == 3) { lpair=ntab[h][1]; match2=1; following_search(pos,pos1,ptr1,ptr3,lpair,nloop, sequence,seqlen,fpo,fpverb,name,score,match2,&ntrna,&npred,&match,sqoffset); } } /* If no stems with 3 base-pairings have been found, then the stems with 2 base-pairings are used in the following steps */ if (!match2) { for (h=0; h < 5;h++) { if (ntab[h][0] == 2) { lpair=ntab[h][1]; following_search(pos,pos1,ptr1,ptr3,lpair,nloop, sequence,seqlen,fpo,fpverb,name,score,match2,&ntrna,&npred,&match,sqoffset); } } } } score=first_score; } } } } } } /* The sequence is complemented and the algorithm is applied on the complementary strand */ compstrand(&sequence,seqlen); #ifdef VERBOSE if (nloop == 0) fprintf(fpverb,"\n== Trying COMPLEMENTARY strand\n"); #endif } free(sequence); /* free up mem to ready for next sequence */ } fprintf(fpo,"number of sequences= %d\n", nseq); fprintf(fpo,"number of bases tested (one strand)=%ld\n", lseq); lseq = 2* lseq; fprintf(fpo,"number of bases tested (both strands)= %ld\n", lseq); fprintf(fpo,"number of predicted tRNA=%d\n", npred); exit(0); } /* Subroutine that accomplishes the end of the test for the presence of a tRNA gene */ void following_search(long int pos, /* first position of the found T-Psi-C signal */ long int pos1, /* first position of the found D signal */ char *ptr1, /* pointer to the first position of the D signal */ char *ptr3, /* ptr3=ptr1+2 pointer to first position of the D arm */ int lpair, int nloop, /*nloop=0 test of the sequence, */ /*nloop=1 test of the complementary sequence */ char *sequence, long int seqlen, FILE *fpo, /*pointer to the output file */ FILE *fpverb, char *name, int score, /* Value of the general score SG */ int match2, /* integer testing the presence of D */ /* arm with 3 base-pairings */ int *ntrna, int *npred, int *match, long int sqoffset /* offset nucleotide numbering by this much (set with -i param) */ ) { extern Param_set_type ps; char chaine2[300]; /* character string containing the predicted tRNA gene sequence */ char anticodon[4]; /* character string containing the anticodon signal sequence */ char type_trna[4]; /* character string containing the tRNA gene family */ char *ptr2,*ptr4,*ptr5; /*pointers to the sequence, see their definition below*/ int score2, score1; /* variables for the general score SG */ int npair1=0; /* number of base-pairings in the aminoacyl arm */ int lpair1=0; /* number of nucleotides between the first position of the aminoacyl arm and the last one */ int lpair2=0; /* number of nucleotides between the first position of the anticodon arm and the last one */ int npair2=0; /* number of base-pairings in the anticodon arm */ int pos6=0; /* number of nucleotides found between the first position of the anticodon arm and the first position of the T-Psi-C signal. */ int pos4=0; /* number of nucleotides present in the variable loop.*/ int length1=3; /* length of the anticodon signal */ int num=0; /* variable that codes the anticodon signal sequence (comprised between 1 and 65). */ int match1; /* match1=1 if a tRNA without intron has been predicted and 0 otherwise*/ int ncomp=0; /* number of base-pairings observed in the sequence tested for the presence of a given arm */ int i; #ifdef VERBOSE fprintf(fpverb,"IN following search...\n"); #endif score1=score; /* If match2=1, the found D arm present 3 base-pairings, the general score SG (score1) is incremented by 1 Change in the threshold of base-pairings in the D arm for the increment of SG, MODIFY the following line */ if (match2) { score1++; #ifdef VERBOSE fprintf(fpverb,"+ D arm found 3 bp\n"); } else { fprintf(fpverb,"X D arm found less than 3 bp\n"); #endif } npair1=7; /* Number of base-pairings in the aminoacyl arm */ lpair1=pos-pos1+8+23; /* Number of nucleotides between the first position of the aminoacyl arm and the last one */ ptr2=(ptr1-7); /* pointer to the first position of the amino acyl arm */ /* Test for the presence of the aminoacyl arm */ basepairing(ptr2,npair1,lpair1,&ncomp); /* If the number of base-pairings (ncomp) equal 7, the general score SG (score1) is incremented by 1 . Change in the threshold of base-pairings in the aminoacyl arm for the increment of SG, MODIFY the value '7' in the following line */ if (ncomp >= ps.aa_incsg) { score1++; #ifdef VERBOSE fprintf(fpverb,"+ AA arm found %d base pairings\n",ncomp); } else { fprintf(fpverb,"X AA arm found %d base pairings\n",ncomp); #endif } /* Change in the threshold to retain a stem as a potential aminoacyl arm MODIFY the value '6' in the following line */ if (ncomp >= ps.aa_keep) { i = 0; while (i< 300) { chaine2[i]='\0'; i++; } /* If the general score SG is >= 4, the algorithm looks for the presence of an anticodon stem, otherwise the algorithm is initiated again on the following windowed sequence */ if (score1 >= ps.look_for_acloop_sg) { #ifdef VERBOSE fprintf(fpverb,"Looking for anticodon stem\n"); #endif ptr4=ptr3+lpair+2; /* pointer to the first position of the anticodon arm */ match1=0; npair2=5; /* Number of base-pairings in the anticodon arm */ lpair2=16; /* Number of nucleotides between the first position of the anticodon arm and the last position */ /* Test for the presence of an anticodon arm */ basepairing(ptr4,npair2,lpair2,&ncomp); /* If 4 or 5 base-pairings are observed, the windowed sequence is retained as a potential anticodon arm */ if (ncomp >= ps.acloop_min) { if (nloop == 0) *match=1; i=0; while (i< 4) { anticodon[i]='\0'; type_trna[i]='\0'; i++; } /* Test of the presence of the residue T at the position preceding the anticodon signal. If the residue T is present, the general score is incremented by 1.*/ if ((*(ptr4+6)) == 't') { score1++; #ifdef VERBOSE fprintf(fpverb,"+ Invariant T found in anticodon. SG++\n"); } else { fprintf(fpverb,"X Invariant T NOT found in anticodon. No SG inc\n"); #endif } /* If SG >= 5, the windowed sequence is retained as a potential tRNA gene. The tRNA gene predicted at that level is without intron */ #ifdef VERBOSE if (score1 < ps.sg_cutoff) { fprintf(fpverb,"X Under SG threshold: %d\n",score1); } else { fprintf(fpverb,"+ Over SG threshold: %d\n",score1); #else if (score1 >= ps.sg_cutoff) { #endif /* Identification of the tRNA gene family */ strncpy(anticodon,ptr4+7,3); codage(anticodon,length1,&num); corresaa(num,type_trna); strncpy(chaine2,(ptr1-7),lpair1+2); (*ntrna)++; (*npred)++; match1=1; /* match1=1 indicates that a tRNA gene without intron has been predicted */ /* The results are printed in the output file */ printresult(fpo,fpverb,name,pos1,pos,lpair,lpair1,lpair2,nloop,ntrna, chaine2,sequence,seqlen,match,ncomp,type_trna,anticodon,sqoffset); } } /* If no anticodon arm has been found for a value of lpair2=16, i. e. an anticodon loop of 7 nucleotides (without intron), the algorithm searchs for the presence of an anticodon arm assuming the presence of an intron in the anticodon loop */ /* pos6 corresponds to the number of nucleotides found between the first position of the anticodon arm and the first position of the T-Psi-C signal. */ #ifdef VERBOSE fprintf(fpverb,"+ Looking for anticodon stem WITH intron...\n"); #endif pos6=pos-(pos1+lpair+3); /* The search for the presence of an anticodon stem is initiated only if an intron of at least 8 bases long is expected to be present. The value 28 for pos6 corresponds to the number of nucleotides found for the smallest length of the variable loop and for an intron length of 8 nucleotides. Change in the smallest length of the intron, MODIFY the value of pos6 in the following line and also the start value of lpair2 (lpair2=24) in the loop (lpair2 is the number of nucleotides found between the first position of the anticodon arm and the last position of the anticodon arm. lpair2=16 when no intron in the anticodon loop). */ if ((!match1) && (pos6 >=MIN_VAR_LOOP)) { for (lpair2=MIN_VAR_LOOP-4;lpair2= 3. */ pos4=pos-pos1-lpair-lpair2-4; /* ptr5 = pointer to the position preceding the intron. */ ptr5=ptr4+10; /* The anticodon arm is retained if 4 or 5 base-pairings are formed and if pos4 >= 3 */ if ((ncomp >=4) && (pos4 >= 3)) { /* Test for the presence of the residues A or G at the position preceding the intron */ if(((*ptr5) == 'a') || ((*ptr5) == 'g')) { if (nloop == 0) (*match)=1; i=0; while (i<4) { anticodon[i]='\0'; type_trna[i]='\0'; i++; } /* Test for the presence of the residue T at the position preceding the anticodon signal. If the residue T is present, the general score is incremented by 1.*/ if ((*(ptr4+6)) == 't') { score2++; #ifdef VERBOSE fprintf(fpverb,"+ Found invariant T. SG= %d\n",score2); } else { fprintf(fpverb,"X Did NOT find invariant T. SG= %d\n",score2); #endif } /* If SG >= 5, the windowed sequence is retained as a potential tRNA gene. The tRNA gene predicted at that level has one intron in the anticodon loop. */ if (score2 >= ps.sg_cutoff) { /* Identification of the tRNA gene family */ strncpy(anticodon,ptr4+7,3); codage(anticodon,length1,&num); corresaa(num, type_trna); strncpy(chaine2,(ptr1-7),lpair1+2); (*ntrna)++; (*npred)++; /* The results are printed in the output file */ printresult(fpo,fpverb,name,pos1,pos,lpair,lpair1,lpair2,nloop, ntrna,chaine2,sequence,seqlen,match,ncomp,type_trna,anticodon,sqoffset); } } } } } } } } /* Subroutine to read the consensus matrix */ void lectval(FILE *fp, /* pointer to the consensus matrix file */ float (*table_cons)[4], /* table containing the frequency of each base at each position of the signal */ int (*table_inv)[2], /* table containing the position and the nature of the invariant bases found in the signal. Code for the bases: A=0, C=1, G=2 and T=3. */ int *lsig, /*lsig=length of the signal */ int *ktot, /* ktot= number of invariant bases */ float *maxtot /* maxtot= sum of the maximum frequencies */ ) { int i=0,j, k=0,l,m; float max=0; int ret = 0; for (l=0; l< 30; l++) for (m=0; m<4; m++) table_cons[l][m]=0; for (l=0; l< 30; l++) for (m=0; m < 2; m++) table_inv[l][m]=0; while(feof(fp) == 0) { for(j=0;j<4;j++) { ret = fscanf(fp,"%f",&table_cons[i][j]); } i++; } *lsig=i-1; for (i=0; i<*lsig; i++) { for (j=0; j<4; j++) { if (table_cons[i][j] == 1.0) { k++; table_inv[k][1]=i; table_inv[k][2]=j; } } } for (i=0; i<*lsig; i++) { max=table_cons[i][0]; for (j=1; j<4; j++) max= MAX(max,table_cons[i][j]); *maxtot += max; } *ktot=k; } /* Subroutine reading the sequence */ /* Modified to correctly read FASTA sequence files */ int fgetseq(char *name, /* string w/name of the sequence */ char *sequence, /* character string containing the sequence */ long int *seqlen, /* length of sequence */ FILE *fpi) /* input file pointer */ { char line[MAXLINE]; /* character string used to read a line */ char *ptr; /* pointer to the sequence */ long int i,j,c; char *ptrRet; line[0]='\0'; *sequence='\0'; *seqlen = 0; /* Test the first character to choose between the two formats available */ if (fgets(line, MAXLINE, fpi) == NULL) { return 0; } else if (line[0] == ';') { /* File in the non-GenBank format */ if (line[1] != ' ') { for (i=0, ptr= &(line[1]); *ptr != ' ' && *ptr !='\n';i++) name[i]= *ptr++; name[i] = '\0'; while ((c = getc(fpi)) == ';') ptrRet = fgets(line, MAXLINE, fpi); ungetc(c, fpi); ptr = sequence; while ((c= getc(fpi)) != ';' && c != EOF) if (isalpha(c)) { *ptr = tolower(c); ptr++; (*seqlen)++; } if (c != EOF) ungetc(c, fpi); *ptr= '\0'; } else if (line[1] == ' ') { /* Intelligenetics format */ while ((c = getc(fpi)) == ';') ptrRet = fgets(line,MAXLINE, fpi); ungetc(c, fpi); ptrRet = fgets(line, MAXLINE, fpi); for (i=0, ptr= &(line[0]); *ptr != ' ' && *ptr !='\n';i++) name[i]= *ptr++; name[i] = '\0'; ptr = sequence; while ((c= getc(fpi)) != ';' && c != EOF) if (isalpha(c)){ *ptr = tolower(c); ptr++; (*seqlen)++; } if (c != EOF) ungetc(c, fpi); *ptr= '\0'; } } else if (line[0] == '>') { /* Fasta Format */ for (i=1; line[i] == ' '; i++) ; for (j = 0, ptr = &line[i]; *ptr != ' '; ptr++, j++) name[j] = *ptr; name[j] = '\0'; ptr = sequence; while ((c= getc(fpi)) != '>' && c != EOF) if (isalpha(c)) { *ptr = tolower(c); *seqlen += 1; ptr++; } if (c != EOF) ungetc(c, fpi); *ptr= '\0'; } else { /* File in GenBank format */ while (strncmp(line, "LOCUS", 5) != 0) if (fgets(line, MAXLINE, fpi) == NULL) exit(1); for (i = 0, ptr = &line[12]; *ptr != ' '; ptr++, i++) name[i] = *ptr; name[i] = '\0'; while (strncmp(line, "ORIGIN", 6) != 0) if (fgets(line, MAXLINE, fpi) == NULL) exit(1); ptr = sequence; *seqlen=0; ptrRet = fgets(line, MAXLINE, fpi); while (strncmp(line, "//", 2) != 0) { for (i = 0; line[i] != '\n'; i++) if (isalpha(line[i])) { *ptr++ = tolower(line[i]); (*seqlen)++; } ptrRet = fgets(line, MAXLINE, fpi); } *ptr = '\0'; } return (1); } /* Subroutine reading & returning the sequence length */ int getseqsize(FILE *fpi /* input file pointer */ ) { char line[MAXLINE]; /* character string used to read a line */ long int i,c, seqlen, fpi_save_pos; char* ptrRet; line[0]='\0'; seqlen = 0; fpi_save_pos = ftell(fpi); /* save current position in file */ /* Test the first character to choose between the two formats available */ if (fgets(line, MAXLINE, fpi) == NULL) { return 0; } else if (line[0] == ';') { /* File in the non-GenBank format */ if (line[1] != ' ') { while ((c = getc(fpi)) == ';') ptrRet = fgets(line, MAXLINE, fpi); ungetc(c, fpi); while ((c= getc(fpi)) != ';' && c != EOF) if (isalpha(c)) { seqlen++; } } else if (line[1] == ' ') { /* Intelligenetics format */ while ((c = getc(fpi)) == ';') ptrRet = fgets(line,MAXLINE, fpi); ungetc(c, fpi); ptrRet = fgets(line, MAXLINE, fpi); while ((c= getc(fpi)) != ';' && c != EOF) if (isalpha(c)){ seqlen++; } } } else if (line[0] == '>') { /* Fasta Format */ while ((c= getc(fpi)) != '>' && c != EOF) if (isalpha(c)) seqlen++; } else { /* File in GenBank format */ while (strncmp(line, "LOCUS", 5) != 0) if (fgets(line, MAXLINE, fpi) == NULL) exit(1); while (strncmp(line, "ORIGIN", 6) != 0) if (fgets(line, MAXLINE, fpi) == NULL) exit(1); ptrRet = fgets(line, MAXLINE, fpi); while (strncmp(line, "//", 2) != 0) { for (i = 0; line[i] != '\n'; i++) if (isalpha(line[i])) { seqlen++; } ptrRet = fgets(line, MAXLINE, fpi); } } fseek(fpi,fpi_save_pos,0); /* reposition file pointer */ return seqlen; } /* Subroutine that returns the position in the string s where the string t begins or -1 if s does not contain t */ /* Calls to this function eliminated for efficiency T. Lowe 11/95 */ myindex (char *s, char *t) { int i, j, k; for (i=0; s[i] != '\0'; i++) { for (j=i, k=0; t[k] != '\0' && s[j] == t[k]; j++, k++) ; if (t[k] == '\0') return(i); } return(-1); } /* Subroutine looking for the presence of a given signal, returns 1 if a signal is found and 0 otherwise. It also return the table 'weight' containing the frequencies of the oberved bases in the windowed sequence and the number 'ninv' of invariant bases found in the windowed sequence*/ int readsignal(char *ptr, /* pointer to the sequence */ int (*table_inv)[2], /* table containing the position and nature of the invariant bases found in the consensus matrix */ int *lsig, /* lsig= length of the signal */ int *ktot, /* ktot= number of invariant bases in the consensus matrix */ float *weight, /* table containing the frequencies of the observed base at each position of the windowed sequence tested */ float (*table_cons)[4], /* table corresponding to the consensus matrix */ int *ninv, /* ninv= number of invariant */ /* bases in the windowed sequence */ int threshold_inv) /* Number of invariant bases */ /* allowed not to b e invariant */ { extern Param_set_type ps; int k = 1, i=0, j,match1; int l; int tab[30]; (*ninv)=0; for (l=0; l< 30; l++) { weight[l]=0; tab[l]=0; } /* If the consensus matrix contains some invariant bases, the subroutine calculates the number of invariant bases that are found in the windowed sequence (ninv) */ if (*ktot) { for (k=1; k <= (*ktot); k++) { /* (original code commented out) temp[0]= *(ptr+table_inv[k][1]); j = myindex(base,temp); */ switch (*(ptr+table_inv[k][1])) { case 'a': j=0; break; case 'c': j=1; break; case 'g': j=2; break; case 't': j=3; break; default: j=-1; } /* trap for non-ATGC chars, assume match for ambiguous bases (j= -1)*/ #ifdef NO_AMBIG if (j == table_inv[k][2]) #else if ((j == table_inv[k][2]) || (j == -1)) #endif (*ninv)++; } } /* If the number of invariant bases found in the windowed sequence is < to the threshold allowed, the windowed sequence is discarded as a potential signal. */ if ((*ninv) < (*ktot)-threshold_inv) return(0); /* If the number of invariant bases is >= to the threshold, the table 'weight' is constructed */ if((*ninv) >= (*ktot)-threshold_inv) { match1=1; while(match1 && (i<*lsig)) { /* (original code commented out) temp[0]= *(ptr+i); tab[i]= myindex(base,temp); */ switch (*(ptr+i)) { case 'a': tab[i]=0; break; case 'c': tab[i]=1; break; case 'g': tab[i]=2; break; case 't': tab[i]=3; break; default: tab[i]=-1; } /* trap for non-ATGC chars, assume match for ambig bases (tab[i]= -1) */ if (tab[i] == -1) #ifdef NO_AMBIG weight[i] = 0; #else weight[i] = 1; #endif else weight[i]=table_cons[i][tab[i]]; if((ktot == 0) && (weight[i] == 0)) { match1=0; return(0); } else { i++; } } } return(1); } /* Subroutine that calculates the similarity score on the potential signal previously retained by the subroutine readsignal. This subroutine returns 1 it the computed score is greater or equal to the defined threshold and 0 otherwise. It returns also the value of the computed score (score) */ int scoring(float *weight, /* table containing the frequencies of the observed base at each position of the potential signal */ int lsig, /* length of the signal */ float max, /* sum of the maximum frequencies found in */ /* the consensus matrix */ int ktot, /* number of invariant bases found in the */ /* consensus matrix */ float *score, /* value of the computed score on the */ /* potential signal */ float ThresholdValue, /* defined threshold for the */ /* similarity score */ int ninv /* number of invariant bases found */ /* in the potential signal */ ) { float tot; int i; /* Computation of the value of the score on the potential signal */ tot=0; for(i=0; i< lsig; i++) tot += weight[i]; tot -= ninv; max -= ktot; *score = tot / max; /* Comparison of the computed score with the defined threshold value */ if (*score >= ThresholdValue) return(1); else { return(0); } } /* Subroutine looking for base-pairings between two parts of the sequence. It returns the number of base-pairings found (ncomp) */ /* rewritten to improve efficiency & eliminate use of myindex() calls */ void basepairing(char *ptr, /* pointer to the sequence */ int npair, /* number of base-pairings forming a given arm */ int lpair, /* number of nucleotides found between the first position of the first part of the sequence involved in the stem and the last position of the second part of the sequence involved in the stem */ int *ncomp) /* number of base-pairings observed between the two parts of the sequence tested */ { int n; /* loop counter */ *ncomp=0; #ifdef NO_AMBIG for(n=0; n=1;i--) { switch (anticodon[i-1]) { case 'a': j=0; break; case 'c': j=1; break; case 'g': j=2; break; case 't': j=3; break; default: j=-1; } if (j == -1) { match=1; i=1; } *num=(*num)+j*iba; iba=4*iba; } if (match) *num=65; } /* Subroutine that determines the tRNA gene family */ void corresaa(int num, /* Number coding the anticodon signal sequence */ char *type_trna /* tRNA gene family */ ) { /*The table 'amino_acid' gives the correspondence between the number (num) coding the anticodon signal and the amino acid that is added to the protein by the tRNA. For example, if the anticodon is AAA then num=1 and the table will associate the amino acid Phe to that anticodon. The tRNA gene in that case will be a Phe tRNA gene. */ static char *amino_acid[]= {"Phe","Val","Leu","Ile","Cys","Trp","Arg","Ser", "Ser","Ala","Pro","Thr","Tyr","Asp","His","Asn", "Leu","Val","Leu","Met","Trp","Gly","Arg","Arg", "Ser","Ala","Pro","Thr","Sup","Glu","Gln","Lys", "Phe","Val","Leu","Ile","Cys","Gly","Arg","Ser", "Ser","Ala","Pro","Thr","Tyr","Asp","His","Asn", "Leu","Val","Leu","Ile","Sup","Gly","Arg","Arg", "Ser","Ala","Pro","Thr","Sup","Glu","Gln","Lys", "Ind"}; strncpy(type_trna,amino_acid[num-1],3); } /* Subroutine that prints the results of the search */ void printresult(FILE *fpo, /* output file pointer */ FILE *fpverb, /* character string for the name of the sequence */ char *name, long int pos1, /* first position of the D signal */ long int pos, /* first position of the T-Psi-C signal */ int lpair, /* number of nucleotides between the */ /* first position of the D arm and the last one */ int lpair1, /* number of nucleotides between the first position of the aminoacyl arm and the last one */ int lpair2, /* number of nucleotides between the first position of the anticodon arm and the last one */ int nloop, /* nloop=0, scanning of the direct strand; nloop=1 scanning of the complementary strand */ int *ntrna, /* number of tRNA genes predicted in the sequence */ char *chaine2, /* character string for the predicted tRNA gene sequence */ char *sequence, /* character string containing the sequence tested */ long int length, /* length of the sequence */ int *match, /* match=1 if at least one tRNA gene has been found on the direct strand and 0 otherwise */ int ncomp, /* number of base-pairings in the anticodon arm of the predicted tRNA gene */ char *type_trna, /* character string for the tRNA gene family */ char *anticodon, /* character string for the anticodon signal sequence */ long int sqoffset /* offset nucleotide numbering by this much (set with -i param) */ ) { long int pos2; /* first position of the predicted tRNA gene when it is found on the complementary strand */ long int posstart; /* first position of the intron */ long int posend; /* last position of the intron */ /* If lpair2 > 16, treatment of the tRNA gene with one intron */ /* Results for the tRNA genes predicted on the direct strand */ #ifdef VERBOSE fprintf(fpverb,"*** tRNA found\n\n"); #endif if ((nloop) == 0) { if((*ntrna) == 1) fprintf(fpo,"sequence name= %s\n", name); fprintf(fpo,"start position= %ld end position= %ld\n",pos1-7+sqoffset,pos1-6+lpair1+sqoffset); fprintf(fpo,"potential tRNA sequence= %s\n",chaine2); fprintf(fpo,"D signal= %ld %ld TpsyC signal= %ld %ld\n", pos1+sqoffset,pos1+7+sqoffset, pos+sqoffset, pos+14+sqoffset); fprintf(fpo,"amino-acyl stem= %ld-%ld;%ld-%ld\n",pos1-7+sqoffset,pos1-1+sqoffset,pos1-13+lpair1+sqoffset, pos1-7+lpair1+sqoffset); fprintf(fpo,"D stem= %ld-%ld;%ld-%ld\n",pos1+2+sqoffset,pos1+4+sqoffset,pos1+lpair+sqoffset, pos1+lpair+2+sqoffset); if(lpair2 > 16) { fprintf(fpo,"anticodon stem= %ld-%ld;%ld-%ld\n",pos1+lpair+4+sqoffset,pos1+lpair+8+sqoffset, pos1+lpair+lpair2+sqoffset,pos1+lpair+lpair2+4+sqoffset); } else { fprintf(fpo,"anticodon stem= %ld-%ld;%ld-%ld\n",pos1+lpair+4+sqoffset,pos1+lpair+8+sqoffset, pos1+lpair+16+sqoffset,pos1+lpair+20+sqoffset); } fprintf(fpo,"TpsyC stem= %ld-%ld;%ld-%ld\n",pos+1+sqoffset,pos+5+sqoffset,pos+13+sqoffset,pos+17+sqoffset); if (strcmp(type_trna,"Ind") != 0) { fprintf(fpo,"tRNA predict as a tRNA- %s : anticodon %s\n", type_trna, anticodon); } else { fprintf(fpo,"anticodon includes unknown bases\n"); } if (lpair2 > 16) { posstart=pos1+lpair+15; posend= pos1+lpair+lpair2-2; fprintf(fpo,"potential intron between positions %ld %ld\n",posstart+sqoffset, posend+sqoffset); } fprintf(fpo,"number of base pairing in the anticodon stem= %d\n",ncomp); fprintf(fpo,"\n"); } else { /* Results on the complementary strand */ /* If no tRNA gene is predicted on the direct strand, then for the first tRNA gene predicted on the complementary strand the two following lines are printed in the output file */ if( (!(*match)) && ((*ntrna) == 1)) { fprintf(fpo,"sequence name= %s\n", name); fprintf(fpo,"complementary strand\n"); } /* If tRNA genes are predicted on the direct strand, then for the first tRNA gene predicted on the complemetary strand the following line is printed in the output file */ else if ((*ntrna) == 1) { fprintf(fpo,"complementary strand\n"); } pos2= length-pos1+8; fprintf(fpo,"start position= %ld end position= %ld\n",pos2+sqoffset,pos2-lpair1-1+sqoffset); fprintf(fpo,"potential tRNA sequence= %s\n",chaine2); fprintf(fpo,"D signal= %ld %ld TpsyC signal= %ld %ld\n",length-pos1+1+sqoffset, length-pos1-6+sqoffset,length-pos+1+sqoffset,length-pos-13+sqoffset); fprintf(fpo,"amino-acyl stem= %ld-%ld;%ld-%ld\n",pos2+sqoffset,pos2-6+sqoffset, pos2-lpair1+6+sqoffset, pos2-lpair1+sqoffset); fprintf(fpo,"D stem= %ld-%ld;%ld-%ld\n",length-pos1-1+sqoffset,length-pos1-3+sqoffset, length-pos1-lpair+1+sqoffset,length-pos1-lpair-1+sqoffset); if (lpair2 > 16) { posstart=pos1+lpair+15; posend=pos1+lpair+lpair2-2; fprintf(fpo,"anticodon stem= %ld-%ld;%ld-%ld\n",length-pos1-lpair-3+sqoffset, length-pos1-lpair-7+sqoffset,length-posend-1+sqoffset,length-posend-5+sqoffset); } else { fprintf(fpo,"anticodon stem= %ld-%ld;%ld-%ld\n",length-pos1-lpair-3+sqoffset, length-pos1-lpair-7+sqoffset,length-pos1-lpair-lpair2+1+sqoffset, length-pos1-lpair-lpair2-3+sqoffset); } fprintf(fpo,"TpsyC stem= %ld-%ld;%ld-%ld\n",length-pos+sqoffset,length-pos-4+sqoffset, length-pos-12+sqoffset,length-pos-16+sqoffset); if (strcmp(type_trna,"Ind") != 0) { fprintf(fpo,"tRNA predict as a tRNA- %s : anticodon %s\n", type_trna, anticodon); } else { fprintf(fpo,"anticodon includes unknown bases\n"); } if (lpair2 > 16) { posstart=pos1+lpair+15; posend=pos1+lpair+lpair2-2; fprintf(fpo,"potential intron between positions %ld %ld\n", length-posstart+1+sqoffset ,length-posend+1+sqoffset); } fprintf(fpo,"number of base pairing in the anticodon stem=%d\n",ncomp); fprintf(fpo,"\n"); } } void set_search_params (Param_set_type *ps, int params) { if (params == 1) { ps->tpc_sig_thresh = ST_TPC_SIG_THRESH; ps->d_sig_thresh = ST_D_SIG_THRESH; ps->sg_cutoff = ST_SG_CUTOFF; ps->tpc_inv = ST_TPC_INV; ps->tpc_incsg = ST_TPC_INCSG; ps->tpc_keep = ST_TPC_KEEP; ps->d_inv = ST_D_INV; ps->look_for_acloop_sg = ST_LOOK_FOR_ACLOOP_SG; ps->acloop_min = ST_ACLOOP_MIN; ps->aa_incsg = ST_AA_INCSG; ps->aa_keep = ST_AA_KEEP; } else if (params == 2) { ps->tpc_sig_thresh = RX_TPC_SIG_THRESH; ps->d_sig_thresh = RX_D_SIG_THRESH; ps->sg_cutoff = RX_SG_CUTOFF; ps->tpc_inv = RX_TPC_INV; ps->tpc_incsg = RX_TPC_INCSG; ps->tpc_keep = RX_TPC_KEEP; ps->d_inv = RX_D_INV; ps->look_for_acloop_sg = RX_LOOK_FOR_ACLOOP_SG; ps->acloop_min = RX_ACLOOP_MIN; ps->aa_incsg = RX_AA_INCSG; ps->aa_keep = RX_AA_KEEP; } else if (params == 3) { ps->tpc_sig_thresh = ALT_TPC_SIG_THRESH; ps->d_sig_thresh = ALT_D_SIG_THRESH; ps->sg_cutoff = ALT_SG_CUTOFF; ps->tpc_inv = ALT_TPC_INV; ps->tpc_incsg = ALT_TPC_INCSG; ps->tpc_keep = ALT_TPC_KEEP; ps->d_inv = ALT_D_INV; ps->look_for_acloop_sg = ALT_LOOK_FOR_ACLOOP_SG; ps->acloop_min = ALT_ACLOOP_MIN; ps->aa_incsg = ALT_AA_INCSG; ps->aa_keep = ALT_AA_KEEP; } else { fprintf (stderr,"tRNAscan1.4: FATAL: Unable to select search parameter set.\n"); exit(1); } } tRNAscan-SE-2.0/src/misc.c0000644000543100007160000001524011021467304014520 0ustar pchanlowelab/* misc.c * Stuff with no obvious other place to go; * mostly alphabet-related functions. * SRE, Mon Sep 6 10:50:46 1993 */ #include #include #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif char *ALPHABET = RNA_ALPHABET; /* Function: SymbolIndex() * * Purpose: Given a sequence symbol, return an array index. * Used for retrieving emission statistics from the * model. This would be trivial, except that we must * expect to see degenerate codes for both RNA and * protein sequence. The rule we follow for degenerate * codes is like BLAST -- we choose one possibility * at random. Note that this is unlike the HMM package, * which goes to the trouble of calculating a weighted * average of the possibilities. * * If the symbol is not recognized, print a warning but * treat it as a fully ambiguous position (N or X). * * Return: the index, usually 0..3 or 0..19. */ int SymbolIndex(char sym) { char *sptr; /* trivial case: sym is in alphabet */ if ((sptr = strchr(ALPHABET, sym)) != NULL) return (sptr - ALPHABET); /* non-trivial case: possible degenerate symbol */ if (ALPHATYPE == kAmino) { switch (sym) { case 'B': return (strchr(ALPHABET, "ND"[CHOOSE(2)]) - ALPHABET); case 'Z': return (strchr(ALPHABET, "QE"[CHOOSE(2)]) - ALPHABET); default: Warn("Warning: unrecognized character %c in sequence\n", sym); /* break thru to case 'X' */ case 'X': return(CHOOSE(20)); } } else if (ALPHATYPE == kDNA) { switch (sym) { case 'B': return (strchr(ALPHABET, "CGT"[CHOOSE(3)]) - ALPHABET); case 'D': return (strchr(ALPHABET, "AGT"[CHOOSE(3)]) - ALPHABET); case 'H': return (strchr(ALPHABET, "ACT"[CHOOSE(3)]) - ALPHABET); case 'K': return (strchr(ALPHABET, "GT" [CHOOSE(2)]) - ALPHABET); case 'M': return (strchr(ALPHABET, "AC" [CHOOSE(2)]) - ALPHABET); case 'R': return (strchr(ALPHABET, "AG" [CHOOSE(2)]) - ALPHABET); case 'S': return (strchr(ALPHABET, "CG" [CHOOSE(2)]) - ALPHABET); case 'U': return (strchr(ALPHABET, 'T') - ALPHABET); case 'V': return (strchr(ALPHABET, "ACG"[CHOOSE(3)]) - ALPHABET); case 'W': return (strchr(ALPHABET, "AT" [CHOOSE(2)]) - ALPHABET); case 'Y': return (strchr(ALPHABET, "CT" [CHOOSE(2)]) - ALPHABET); case 'N': return (CHOOSE(4)); case 'X': return (CHOOSE(4)); /* X is not IUPAC, but that doesn't stop biologists from using it. */ default: Warn("Warning: unrecognized character %c in sequence\n", sym); return (CHOOSE(4)); } } else if (ALPHATYPE == kRNA) { switch (sym) { case 'B': return (strchr(ALPHABET, "CGU"[CHOOSE(3)]) - ALPHABET); case 'D': return (strchr(ALPHABET, "AGU"[CHOOSE(3)]) - ALPHABET); case 'H': return (strchr(ALPHABET, "ACU"[CHOOSE(3)]) - ALPHABET); case 'K': return (strchr(ALPHABET, "GU" [CHOOSE(2)]) - ALPHABET); case 'M': return (strchr(ALPHABET, "AC" [CHOOSE(2)]) - ALPHABET); case 'R': return (strchr(ALPHABET, "AG" [CHOOSE(2)]) - ALPHABET); case 'S': return (strchr(ALPHABET, "CG" [CHOOSE(2)]) - ALPHABET); case 'T': return (strchr(ALPHABET, 'U') - ALPHABET); case 'V': return (strchr(ALPHABET, "ACG"[CHOOSE(3)]) - ALPHABET); case 'W': return (strchr(ALPHABET, "AU" [CHOOSE(2)]) - ALPHABET); case 'Y': return (strchr(ALPHABET, "CU" [CHOOSE(2)]) - ALPHABET); case 'N': return (CHOOSE(4)); case 'X': return (CHOOSE(4)); /* X is not IUPAC, but that doesn't stop biologists from using it. */ default: Warn("Warning: unrecognized character %c in sequence\n", sym); return (CHOOSE(4)); } } return 0; /* not reached */ } /* Function: PrepareSequence() * * Purpose: Ran into a severe bug caused by degenerate symbols. Original * strategy was to randomly assign a single symbol as we do * Viterbi calculations, but since we don't keep traceback pointers * when the trace tries to recalculate, it doesn't know the * random choices made by VitFill(). * * This is a fix, and it's a bit more extreme. Go through a * sequence and *replace* degenerate symbols once * and for all with single randomly chosen ones. Also, * we convert to upper case ALPHATYPE alphabet. * * Args: seq - sequence to prepare. * * Return: 1 on success, 0 on failure. */ int PrepareSequence(char *seq) { char *sym; for (sym = seq; *sym != '\0'; sym++) { *sym = toupper((int)*sym); /* sym is in alphabet, or a gap? ok, go to next one */ if (strchr(ALPHABET, *sym) != NULL || isgap(*sym)) continue; /* then it's a degenerate symbol. * According to alphabet, choose a single symbol to represent it. * watch out for too-clever scheme for random choice: "ABC"[random() % 3] */ if (ALPHATYPE == kRNA) { switch (*sym) { case 'B': *sym = "CGU"[CHOOSE(3)]; break; case 'D': *sym = "AGU"[CHOOSE(3)]; break; case 'H': *sym = "ACU"[CHOOSE(3)]; break; case 'K': *sym = "GU" [CHOOSE(2)]; break; case 'M': *sym = "AC" [CHOOSE(2)]; break; case 'R': *sym = "AG" [CHOOSE(2)]; break; case 'S': *sym = "CG" [CHOOSE(2)]; break; case 'T': *sym = 'U'; break; case 'V': *sym = "ACG"[CHOOSE(3)]; break; case 'W': *sym = "AU" [CHOOSE(2)]; break; case 'Y': *sym = "CU" [CHOOSE(2)]; break; default: Warn("Warning: unrecognized character %c in sequence\n", *sym); /* break through to case 'N' */ case 'N': *sym = ALPHABET[CHOOSE(4)]; break; } } else if (ALPHATYPE == kDNA) { switch (*sym) { case 'B': *sym = "CGT"[CHOOSE(3)]; break; case 'D': *sym = "AGT"[CHOOSE(3)]; break; case 'H': *sym = "ACT"[CHOOSE(3)]; break; case 'K': *sym = "GT" [CHOOSE(2)]; break; case 'M': *sym = "AC" [CHOOSE(2)]; break; case 'R': *sym = "AG" [CHOOSE(2)]; break; case 'S': *sym = "CG" [CHOOSE(2)]; break; case 'U': *sym = 'T'; break; case 'V': *sym = "ACG"[CHOOSE(3)]; break; case 'W': *sym = "AT" [CHOOSE(2)]; break; case 'Y': *sym = "CT" [CHOOSE(3)]; break; default: Warn("Warning: unrecognized character %c in sequence\n", *sym); /* break through to case 'N' */ case 'N': *sym = ALPHABET[CHOOSE(4)]; break; } } else { Warn("Warning: non-nucleic acid alphabet, unrecognized character %c in sequence\n", *sym); *sym = ALPHABET[CHOOSE(ALPHASIZE)]; } } return 1; } tRNAscan-SE-2.0/src/align_main.c0000644000543100007160000001622411021467303015665 0ustar pchanlowelab/* align_main.c * SRE, Wed Jun 30 09:56:15 1993 * 2.0 Thu Sep 30 14:23:57 1993 * * main() for covea * Multiple sequence alignment to a covariance HMM model. */ #include #include #include #include #include #ifdef NEED_GETOPTH #include #endif #include "structs.h" #include "funcs.h" #include "squid.h" #include "version.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #define OPTIONS "aho:s:S" static char usage[] = "\ Usage: covea [-options] \n\ where supported options are:\n\ -a : annotate all base pairs, not just canonical ones\n\ -h : print short help and version info\n\ -o : write alignment to in SELEX format\n\ -s : save individual alignment scores to \n\ \n\ Experimental options:\n\ -S : use small-memory variant of alignment algorithm\n"; static char banner[] = "covea: multiple sequence alignment to a covariance model"; int main(int argc, char **argv) { char **rseqs; /* raw sequences to align */ char **aseqs; /* multiple sequence alignment */ SQINFO *sqinfo; /* array of info structures */ int nseq; /* number of seqs */ char *seqfile; /* sequence file */ int format; /* format of sequence file */ char *cmfile; /* cvhmm save file to read */ struct cm_s *cm; /* model */ struct trace_s **tr; /* array of tracebacks for seqs */ int idx; /* counter for sequences */ double score; /* score of indiv. alignment */ double tot_score; /* sum of scores */ AINFO ainfo; /* optional alignment info (sec structure) */ struct istate_s *icm; /* model, integer log odds form */ int statenum; /* # of states in icm */ double rfreq[ALPHASIZE]; /* expected background symbol frequencies */ char *outfile; /* file to write alignment to */ char *scorefile; /* file to save scores to */ FILE *ofp; /* opened outfile */ FILE *sfp; /* opened scorefile */ int do_smallmemory; /* use small-memory viterbi variant */ int watsoncrick; /* annotate only canonical pairs */ int optc; extern char *optarg; /* for getopt() */ extern int optind; /* for getopt() */ #ifdef MEMDEBUG unsigned long histid1, histid2, orig_size, current_size; #endif /*********************************************** * Parse command line ***********************************************/ outfile = NULL; scorefile = NULL; do_smallmemory = FALSE; watsoncrick = TRUE; while ((optc = getopt(argc, argv, OPTIONS)) != -1) switch (optc) { case 'a': watsoncrick = FALSE; break; case 'o': outfile = optarg; break; case 's': scorefile = optarg; break; case 'S': do_smallmemory = TRUE; break; case 'h': printf("%s\n version %s (%s)\n%s\n", banner, RELEASE, RELEASEDATE, usage); exit(0); default: Die("unrecognized option %c\n", optc); } if (argc - optind != 2) Die("%s\n", usage); cmfile = argv[argc-2]; seqfile = argv[argc-1]; #ifdef MEMDEBUG orig_size = malloc_size(&histid1); #endif /*********************************************** * Get sequence data and model; open output ptrs ***********************************************/ if (! SeqfileFormat(seqfile, &format, NULL)) Die("Failed to determine format of file %s\n", seqfile); if (! ReadMultipleRseqs(seqfile, format, &rseqs, &sqinfo, &nseq)) Die("Failed to read sequences from file %s", seqfile); if (! ReadCM(cmfile, &cm)) Die("Failed to read model from file %s", cmfile); rfreq[0] = rfreq[1] = rfreq[2] = rfreq[3] = 0.25; if (! RearrangeCM(cm, rfreq, &icm, &statenum)) Die("Failed to convert CM to integer log odds"); if (outfile != NULL) if ((ofp = fopen(outfile, "w")) == NULL) Die("Open failed for alignment output file %s", outfile); if (scorefile != NULL) if ((sfp = fopen(scorefile, "w")) == NULL) Die("Open failed for score output file %s", scorefile); /*********************************************** * Print banner ***********************************************/ puts(banner); printf(" release %s, %s\n\n", RELEASE, RELEASEDATE); printf("---------------------------------------------------\n"); printf("Sequence data: %s (%d sequences)\n", seqfile, nseq); printf("Covariance model: %s (%d nodes)\n", cmfile, cm->nodes); if (outfile != NULL) printf("Alignment saved to: %s\n", outfile); if (scorefile != NULL) printf("Indiv. scores saved to: %s\n", scorefile); printf("---------------------------------------------------\n"); puts(""); /*********************************************** * Do the alignment ***********************************************/ if ((tr = (struct trace_s **) malloc (nseq * sizeof(struct trace_s *))) == NULL) Die("Memory failure, line %d of %s", __LINE__, __FILE__); tot_score = 0.0; for (idx = 0; idx < nseq; idx++) { char *prepseq; prepseq = Strdup(rseqs[idx]); PrepareSequence(prepseq); if (do_smallmemory) { if (! SmallViterbiAlign(icm, statenum, prepseq, &score, &tr[idx])) Die("SmallViterbiAlign() failed on sequence %d", idx); } else if (! ViterbiAlign(icm, statenum, prepseq, &score, &tr[idx])) Die("ViterbiAlign() failed on sequence %d", idx); tot_score += score; if (scorefile != NULL) fprintf(sfp, "%-8.3f : %s\n", score, sqinfo[idx].name); free(prepseq); } if (do_smallmemory) { printf("aborting... no traceback/alignment code yet for small memory variant\n"); Free2DArray(rseqs, nseq); FreeCM(cm); exit(0); } if (! Traces2Alignment(rseqs, sqinfo, tr, nseq, cm, watsoncrick, &aseqs, &ainfo)) Die("Traces2Alignment() failed"); /*********************************************** * Print the alignment ***********************************************/ if (outfile != NULL) { if (! WriteSELEX(ofp, aseqs, nseq, &ainfo, 60)) Die("Write failed: can't save alignment to %s", outfile); fclose(ofp); printf("Alignment written to %s\n", outfile); } else { if (! WriteSELEX(stdout, aseqs, nseq, &ainfo, 60)) Die("Write failed: can't print alignment"); } if (scorefile != NULL) fclose(sfp); printf("Overall alignment score: %.2f\n", tot_score / (double) nseq); /*********************************************** * Garbage collect and exit ***********************************************/ for (idx = 0; idx < nseq; idx++) { FreeTrace(tr[idx], NULL); FreeSequence(rseqs[idx],&(sqinfo[idx])); } free(tr); free(sqinfo); FreeAlignment(aseqs, nseq, &ainfo); FreeCM(cm); free(icm); #ifdef MEMDEBUG current_size = malloc_size(&histid2); if (current_size != orig_size) malloc_list(2, histid1, histid2); else fprintf(stderr, "No memory leaks, sir.\n"); #endif return 0; } tRNAscan-SE-2.0/src/save.c0000644000543100007160000002063411672025122014526 0ustar pchanlowelab/* save.c * Saving models to disk, and reading them back in * SRE, Wed Sep 8 17:14:43 1993 * * Both binary and flat text save formats are supported. */ #include #include #include #include "funcs.h" #include "structs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* The magic number for our binary file is "cm20" + 0x80808080 */ static int v20magic = 0xe3edb2b0; static int read_cm20 (FILE *fp, struct cm_s **ret_cm); static int read_bincm20(FILE *fp, struct cm_s **ret_cm); /* Function: WriteCM() * * Purpose: Print a flat text copy of the data from a model * to a file handle. * * Returns: 1 on success, 0 on failure. */ int WriteCM(FILE *fp, struct cm_s *cm) { int i, j, k; /* header info */ fprintf(fp, "### cove V2\n"); fprintf(fp, "%d \tnodes\n", cm->nodes); /* over all nodes, 0..cm->nodes-1 */ for (k = 0; k < cm->nodes; k++) { fprintf(fp, "### node %d type %d\n", k, cm->nd[k].type); fprintf(fp, "%d %d\n", cm->nd[k].nxt, cm->nd[k].nxt2); /* transitions */ for (i = 0; i < STATETYPES; i++) { for (j = 0; j < STATETYPES; j++) fprintf(fp, "%.5f ", cm->nd[k].tmx[i][j]); putc('\n', fp); } /* INSL emissions */ for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%.5f ", cm->nd[k].il_emit[i]); fputs("# INSL\n", fp); /* INSR emissions */ for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%.5f ", cm->nd[k].ir_emit[i]); fputs("# INSR\n", fp); /* MATP emissions */ for (i = 0; i < ALPHASIZE; i++) { for (j = 0; j < ALPHASIZE; j++) fprintf(fp, "%.5f ", cm->nd[k].mp_emit[i][j]); fputs("# MATP\n", fp); } /* MATL emissions */ for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%.5f ", cm->nd[k].ml_emit[i]); fputs("# MATL\n", fp); /* MATR emissions */ for (i = 0; i < ALPHASIZE; i++) fprintf(fp, "%.5f ", cm->nd[k].mr_emit[i]); fputs("# MATR\n", fp); } return 1; } /* Function: WriteBinaryCM() * * Purpose: Save a model in binary format; somewhat nonportable * but much more compressed. * * Args: fp - open file pointer to write to * cm - model to save * * Return: 1 on success, 0 on failure. */ int WriteBinaryCM(FILE *fp, struct cm_s *cm) { int k; /* counter for nodes */ /* Write the four-byte magic number. It identifies the file * as binary (because the high bits are set), and identifies * the major version of the program. It can be used to * identify and possibly humor byte-swapped architectures, * although we don't bother for now. */ fwrite((void *) &v20magic, 4, 1, fp); /* header info */ fwrite((void *) &(cm->nodes), sizeof(int), 1, fp); /* loop over all nodes in model */ for (k = 0; k < cm->nodes; k++) { /* type of node */ fwrite((void *) &cm->nd[k].type, sizeof(int), 1, fp); /* indices of child nodes */ fwrite((void *) &cm->nd[k].nxt, sizeof(int), 1, fp); fwrite((void *) &cm->nd[k].nxt2, sizeof(int), 1, fp); /* transitions */ fwrite((void *) cm->nd[k].tmx, sizeof(double), STATETYPES*STATETYPES, fp); /* INS emissions */ fwrite((void *) cm->nd[k].il_emit, sizeof(double), ALPHASIZE, fp); fwrite((void *) cm->nd[k].ir_emit, sizeof(double), ALPHASIZE, fp); /* MAT emissions */ fwrite((void *) cm->nd[k].mp_emit, sizeof(double), ALPHASIZE * ALPHASIZE, fp); fwrite((void *) cm->nd[k].ml_emit, sizeof(double), ALPHASIZE, fp); fwrite((void *) cm->nd[k].mr_emit, sizeof(double), ALPHASIZE, fp); } return 1; } /* Function: ReadCM() * * Purpose: Read a flat text copy of the data from a model * from a file. * * Returns: 1 on success, 0 on failure. */ int ReadCM(char *filename, struct cm_s **ret_cm) { FILE *fp; char buffer[512]; int magic_number; /* Open file for reading */ if ((fp = fopen(filename, "r")) == NULL) { Warn("Cannot open model file %s for reading", filename); return 0; } /* Look for "magic" header and dispatch reading * to the appropriate routine. First we check the leading * 4 bytes to see if it's a binary save file. */ if (! fread((void *) &magic_number, 4, 1, fp)) Die("Failed to read magic number from model file %s", filename); if (magic_number == v20magic) { if (! read_bincm20(fp, ret_cm)) Die("Failed to read binary model file %s", filename); } else { rewind(fp); if (fgets(buffer, 512, fp) == NULL) { Warn("ain't no data in the model file %s, pal", filename); return 0; } if (strncmp(buffer, "### cove V2", 11) == 0) { if (! read_cm20(fp, ret_cm)) return 0; } else { Warn("File %s is not a recognized covariance model format", filename); return 0; } } /* We're vulnerable to some roundoff error when we've read * files in; make sure all probabilities sum to 1. */ NormalizeCM(*ret_cm); fclose(fp); return 1; } /* Function: read_cm20() * * Purpose: Read flat text model files from version 2.0 of the * package. The file pointer fp is positioned on the line * just after the "magic" header. Allocates, reads in, * and returns the model. */ static int read_cm20(FILE *fp, struct cm_s **ret_cm) { struct cm_s *cm; int i, j, k; int nodes; int ret = 0; /* header info */ ret = fscanf(fp, "%d \tnodes\n", &nodes); /* Given that header info, alloc for a model. */ cm = AllocCM(nodes); if (cm == NULL) { Warn("Failed to allocate model"); return 0; } /* over all nodes, 0..nodes-1 */ for (k = 0; k < nodes; k++) { ret = fscanf(fp, "### node %*d"); ret = fscanf(fp, " type %d\n", &cm->nd[k].type); ret = fscanf(fp, "%d %d\n", &cm->nd[k].nxt, &cm->nd[k].nxt2); /* transitions */ for (i = 0; i < STATETYPES; i++) { for (j = 0; j < STATETYPES; j++) ret = fscanf(fp, "%lf ", &cm->nd[k].tmx[i][j]); ret = fscanf(fp, "\n"); } /* INSL emissions */ for (i = 0; i < ALPHASIZE; i++) ret = fscanf(fp, "%lf ", &cm->nd[k].il_emit[i]); ret = fscanf(fp, "# INSL\n"); /* INSR emissions */ for (i = 0; i < ALPHASIZE; i++) ret = fscanf(fp, "%lf ", &cm->nd[k].ir_emit[i]); ret = fscanf(fp, "# INSR\n"); /* MATP emissions */ for (i = 0; i < ALPHASIZE; i++) { for (j = 0; j < ALPHASIZE; j++) ret = fscanf(fp, "%lf ", &cm->nd[k].mp_emit[i][j]); ret = fscanf(fp, "# MATP\n"); } /* MATL emissions */ for (i = 0; i < ALPHASIZE; i++) ret = fscanf(fp, "%lf ", &cm->nd[k].ml_emit[i]); ret = fscanf(fp, "# MATL\n"); /* MATR emissions */ for (i = 0; i < ALPHASIZE; i++) ret = fscanf(fp, "%lf ", &cm->nd[k].mr_emit[i]); ret = fscanf(fp, "# MATR\n"); } *ret_cm = cm; return 1; } /* Function: read_bincm20() * * Purpose: Read binary save files. * * Args: fp - open file pointer for reading, positioned after magic number * ret_cm - RETURN: model * * Return: 1 on success, 0 on failure */ static int read_bincm20(FILE *fp, struct cm_s **ret_cm) { struct cm_s *cm; int nodes; int k; /* counter for nodes */ if (! fread((void *) &(nodes), sizeof(int), 1, fp)) return 0; /* now create space for CM. */ cm = AllocCM(nodes); if (cm == NULL) return 0; /* everything else is nodes */ for (k = 0; k < nodes; k++) { /* type of node */ if (! fread((void *) &cm->nd[k].type, sizeof(int), 1, fp)) return 0; /* indices of child nodes */ if (! fread((void *) &cm->nd[k].nxt, sizeof(int), 1, fp)) return 0; if (! fread((void *) &cm->nd[k].nxt2, sizeof(int), 1, fp)) return 0; /* transitions */ if (! fread((void *) cm->nd[k].tmx, sizeof(double), STATETYPES*STATETYPES, fp)) return 0; /* INS emissions */ if (! fread((void *) cm->nd[k].il_emit, sizeof(double), ALPHASIZE, fp)) return 0; if (! fread((void *) cm->nd[k].ir_emit, sizeof(double), ALPHASIZE, fp)) return 0; /* MAT emissions */ if (! fread((void *) cm->nd[k].mp_emit, sizeof(double), ALPHASIZE*ALPHASIZE, fp)) return 0; if (! fread((void *) cm->nd[k].ml_emit, sizeof(double), ALPHASIZE, fp)) return 0; if (! fread((void *) cm->nd[k].mr_emit, sizeof(double), ALPHASIZE, fp)) return 0; } *ret_cm = cm; return 1; } tRNAscan-SE-2.0/src/fastmodelmaker.c0000644000543100007160000004460111021467304016566 0ustar pchanlowelab/* fastmodelmaker.c * * Construct a covariance model from an alignment, using an approximate * but fast algorithm. Complexity is N^2 in memory, N^3 in time. Get * back a covariance model, and information contents in bits for * both primary and secondary structure. * * - use Stormo/Gutell MIXY algorithm to calculate pairwise covariances * for all aligned column pairs i,j. This produces the matrix **mxy; * it is indexed 0..alen-1 by 0..alen-1, as a flipped diagonal matrix * mxy[j][i], j > i. The diagonal (i == j) is unused (and unallocated * for). * * - use a quick and dirty Zuker-like algorithm to reduce this N^2 * matrix to the optimal model of non-overlapping chords. This * produces the matrix **zmat. zmat is a flipped diagonal matrix, * zmat[j][i], j >= i. The diagonal (i==j) is initialized to zero. * All other cells take on positive values, summing covariances. * * - traceback thru the zmat matrix and construct a dynamic binary * tree *ztr, excluding inserted columns. *ztr * is constructed much the same as a normal traceback tree is constructed. * emitl and emitr store the 0..alen-1 indices of the column this node is * responsible for, even for BEGIN and BIFURC nodes. type is * a node type (MATP_NODE), not a state type. * Note that these are exceptions to the indexing scheme used * by traceback structures everywhere else! * * - Then, for each *individual* sequence, construct a fake traceback based * on *ztr. Use these tracebacks to collect statistics from the alignment * and initialize probabilities in a new model. */ #include #include #include #include #include "version.h" #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static void mixy(char **aseq, int nseq, int alen, int ***ret_mixy); static void free_mixy(int **mxy, int acol); static void zfill(int **mxy, int acol, int ***ret_zmat, double *ret_sum); static void free_zmat(int **zmat, int acol); static void ztrace(int **zmat, double *gapfq, double gapthresh, int **mxy, int acol, struct trace_s **ret_ztr); #ifdef DEBUG static void dump_mixy(int **mxy, int alen); static void dump_zmat(int **zmat, int alen); static void dump_ztr(struct trace_s *ztr); #endif /* DEBUG */ /* Function: Fastmodelmaker() * * Purpose: Given a sequence alignment, construct a reasonable * starting model. Returns the model, as well as numbers * for the primary and secondary structure information * content of the alignment. * * Args: aseqs - sequence alignment. * ainfo - info about the alignment * nseq - number of sequences * prior - prior distributions for CM construction * gapthresh - over this fraction of gaps, assign to INS * ret_secinfo - RETURN: sec structure info content (bits) (maybe NULL) * ret_cm - RETURN: new model (maybe NULL) * ret_mtr - RETURN: master traceback for aseqs (maybe NULL) * * Return: 1 on success, 0 on failure. */ int Fastmodelmaker(char **aseqs, AINFO *ainfo, int nseq, struct prior_s *prior, double gapthresh, double *ret_secinfo, struct cm_s **ret_cm, struct trace_s **ret_mtr) { struct cm_s *cm; int **mxy; int **zmat; int M; double secinfo; double *gapfq; /* frequencies of gap occurrence per column */ struct trace_s *ztr; struct trace_s *tr; /* individual traceback */ struct trmem_s *pool; /* memory pool for traceback */ int idx; int gaps; int apos; /* Precalculate gap frequencies seen in each column of alignment */ if ((gapfq = (double *) malloc (sizeof(double) * ainfo->alen)) == NULL) Die("malloc failed, line %d file %s", __LINE__, __FILE__); for (apos = 0; apos < ainfo->alen; apos++) { gaps = 0; for (idx = 0; idx < nseq; idx++) if (isgap(aseqs[idx][apos])) gaps++; gapfq[apos] = (double) gaps / (double) nseq; } /* build Mxy matrix */ mixy(aseqs, nseq, ainfo->alen, &mxy); /* dynamic programming fill of zmat, using mxy */ zfill(mxy, ainfo->alen, &zmat, &secinfo); /* traceback of zmat to make ztr tree */ ztrace(zmat, gapfq, gapthresh, mxy, ainfo->alen, &ztr); /* PrintTrace(stdout, ztr); */ NumberMasterTrace(ztr, &M); /* allocate for a model */ if ((cm = AllocCM(M)) == NULL) Die("AllocCM() failed"); TopofyNewCM(cm, ztr); /* For each sequence: convert consensus tree ztr to individual fake traceback. * Count traceback into new model. */ for (idx = 0; idx < nseq; idx++) { Transmogrify(ztr, aseqs[idx], &tr, &pool); if (! TraceCount(cm, aseqs[idx], (ainfo->sqinfo[idx].flags & SQINFO_WGT) ? ainfo->sqinfo[idx].weight : 1.0, tr)) Die("TraceCount() failed"); FreeTrace(tr, pool); } if (! VerifyCM(cm)) Die("Bad cm after trace counts."); /* convert CM to probabilities */ ProbifyCM(cm, prior); /* garbage collect & return */ free_mixy(mxy, ainfo->alen); free_zmat(zmat, ainfo->alen); free(gapfq); if (ret_mtr != NULL) *ret_mtr = ztr; else FreeTrace(ztr, NULL); if (ret_cm != NULL) *ret_cm = cm; else FreeCM(cm); if (ret_secinfo != NULL) *ret_secinfo = secinfo / (double) nseq; return 1; } /* Function: mixy() * * Purpose: given a set of N aligned sequences aseq, calculate * pairwise covariances (mutual information). ret_mixy * is allocated, filled, and returned, as a diagonal 2D * (NxN) matrix of values. It must be freed by * the caller. It is a lower diagonal matrix mxy[j][i], * j > i, 0..alen-1 by 0..j-1. * * The values in mxy are integers. They are the average * secondary structure information content (i.e. weighted for * the number of pairs actually occurring in columns i,j) * in bits, to two decimal places (i.e. info*100). * * Returns: mxy, which must be free'd by caller with free_mixy(). */ static void mixy(char **aseq, /* array of aligned sequences, flushed right */ int nseq, /* number of aligned sequences */ int alen, /* length of each sequence (all the same) */ int ***ret_mxy) /* RETURN: mxy array */ { int **mxy; /* RETURN: diagonal covariance matrix */ float fx[ALPHASIZE]; /* singlet frequency vector */ float fy[ALPHASIZE]; /* another singlet frequency vector */ float fxy[ALPHASIZE][ALPHASIZE]; /* pairwise frequency 2D array */ int idx; /* counter for sequences */ int i, j; /* counters for columns x,y */ int symi, symj; /* counters for symbols */ int pairs; /* counter for pairs in which there are no gaps */ long test; /* Allocate for mxy */ if ((mxy = (int **) malloc (alen * sizeof(int *))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); for (j = 1; j < alen; j++) if ((mxy[j] = (int *) malloc (j * sizeof(int))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); test = (long) mxy[20]; /* calculate mxy */ for (j = 1; j < alen; j++) for (i = 0; i < j; i++) { /* zero counter array */ for (symj = 0; symj < ALPHASIZE; symj++) { fx[symj] = fy[symj] = 0.0; for (symi = 0; symi < ALPHASIZE; symi++) fxy[symj][symi] = 0.0; } /* count symbols in a column */ pairs = 0; for (idx = 0; idx < nseq; idx++) { if (isgap(aseq[idx][i]) || isgap(aseq[idx][j])) continue; symi = SymbolIndex(aseq[idx][i]); symj = SymbolIndex(aseq[idx][j]); fx[symi] += 1.0; fy[symj] += 1.0; fxy[symi][symj] += 1.0; pairs++; } /* convert to frequencies */ if (pairs > 0) for (symi = 0; symi < ALPHASIZE; symi++) { fx[symi] /= (float) pairs; fy[symi] /= (float) pairs; for (symj = 0; symj < ALPHASIZE; symj++) fxy[symi][symj] /= (float) pairs; } /* calculate mxy. 144.269504 is a conversion of ln's into * bits * 100: i.e. 100 * (1/log(2)) */ mxy[j][i] = 0; for (symi = 0; symi < ALPHASIZE; symi++) for (symj = 0; symj < ALPHASIZE; symj++) { if (fxy[symi][symj] > 0.0) mxy[j][i] += (int) (144.269504 * fxy[symi][symj] * log((fxy[symi][symj] / (fx[symi] * fy[symj])))); } /* Sat Jul 17 22:17:17 1993: We weight by pairs to get an expected score * over all the sequences. Fixes a problem that columns with few symbols * could dominate the calculation just because of noise. */ mxy[j][i] = (mxy[j][i] * pairs) / nseq; } /* dump debugging info */ #ifdef DEBUG dump_mixy(mxy, alen); #endif *ret_mxy = mxy; } /* Function: free_mixy() * * Purpose: free the space allocated for a flipped diagonal * covariance matrix. To do this we also need to * know alen, the number of columns in the starting * sequence alignment. * * Returns: (void) */ static void free_mixy(int **mxy, int alen) { int j; for (j = 1; j < alen; j++) free(mxy[j]); free(mxy); } /* Function: zfill() * * Purpose: Calculate the optimal structure for a covariance matrix * produced by mixy(). Uses a way-simplified form of the * Zuker/Nussinov dynamic programming RNA folding algorithm * to find the structure which a) the emitted pairs sum * to a maximum number of bits of covariance and b) * has no overlapping chords (no pseudoknots). The dynamic * programming matrix is allocated, filled, and returned. * * Returns: ret_zmat is returned thru a passed pointer; it must be * free'd by the caller using free_zmat(). */ static void zfill(int **mxy, /* diagonal covariance matrix from mixy() */ int acol, /* size of mxy; number of aligned columns */ int ***ret_zmat, /* RETURN: filled dynamic programming matrix */ double *ret_sum) /* RETURN: total sum of Mxy for tree (bits) */ { int **zmat; int i, j; int diff; int mid; /* Allocations. * zmat is a flipped diagonal matrix, inclusive of the diagonal; * positions on both axes are numbered 0..acol-1. */ if ((zmat = (int **) malloc (acol * sizeof (int *))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); for (j = 0; j < acol; j++) if ((zmat[j] = (int *) malloc ((j+1) * sizeof(int))) == NULL) Die("Memory allocation failure at %s line %d", __FILE__, __LINE__); /* Initialization. * We initialize the diagonal to 0. */ for (j = 0; j < acol; j++) zmat[j][j] = 0; /* Dynamic programming stage. * Our recursion is: * Sij = max { Si+1,j (emit left, no covariance) * Si,j-1 (emit right, no covariance) * Si+1,j-1 + mxy[j][i]. * max over mid: Si,mid + Smid+1,j (bifurcation) * } */ for (diff = 1; diff < acol; diff++) for (i = 0; (j = i+diff) < acol; i++) { if (j-1 >= i+1) zmat[j][i] = zmat[j-1][i+1] + mxy[j][i]; else zmat[j][i] = mxy[j][i]; if (zmat[j][i+1] > zmat[j][i]) zmat[j][i] = zmat[j][i+1]; if (zmat[j-1][i] > zmat[j][i]) zmat[j][i] = zmat[j-1][i]; for (mid = i+1; mid < j-1; mid++) if (zmat[mid][i] + zmat[j][mid+1] > zmat[j][i]) zmat[j][i] = zmat[mid][i] + zmat[j][mid+1]; } /* Return */ #ifdef DEBUG dump_zmat(zmat, acol); #endif *ret_sum = (double) zmat[acol-1][0] / 100.0; *ret_zmat = zmat; } static void free_zmat(int **zmat, int acol) { int j; for (j = 0; j < acol; j++) free(zmat[j]); free(zmat); } /* Function: ztrace() * * Purpose: Traceback through the dynamic programming matrix constructed * by zfill(). Constructs a dynamic binary tree (ztr) of ztrace_s * structures, which keep track of both topology and the * order in which various aligned columns are emitted. * * ztr ends up being the "shell" or template upon which the * final model is built. ztr captures the branching structure * of the model tree. * * Inserts are dealt with at this point. Columns with a gap frequency * exceeding gapthresh are excluded from ztr. The final tree ztr contains * MATR, MATL, MATP nodes only (with BEGIN and BIFURC of course). * * Data: ztr: a traceback tree. * emitl = index of column emitted left (0..acol-1) * or -1 * emitr = index of column emitted right (0..acol-1) * or -1 * nodeidx = index of node in new model * type = type of node (MATP_NODE, etc.) * * Return: ret_ztr is allocated here and must be free'd by the caller. */ static void ztrace(int **zmat, /* dynamic programming matrix from zfill() */ double *gapfq, /* frequencies of gaps in columns 0..acol-1 */ double gapthresh, /* above this, column is INS-generated */ int **mxy, /* the covariance matrix from mixy() */ int acol, /* number of aligned columns (size of zmat) */ struct trace_s **ret_ztr)/* RETURN: binary tree of best structure */ { struct trace_s *ztr; /* binary tree of best structure */ struct trace_s *curr_ztr; /* ptr to node of ztr we're working on */ struct tracestack_s *dolist; /* pushdown stack of active ztr nodes */ int i,j; /* coords in zmat (0..acol-1) */ int mid; /* midpoint of a bifurcation */ /* Initialize. * Start at i = 0, j = acol-1 and work towards diagonal. */ InitTrace(&ztr, NULL); /* start a trace tree */ dolist = InitTracestack(); /* start a stack for traversing the trace tree */ /* start with root aligned to 0..acol-1 */ curr_ztr = AttachTrace(ztr, NULL, 0, acol-1, -1, ROOT_NODE); curr_ztr = AttachTrace(curr_ztr, NULL, 0, acol-1, -1, -1); PushTracestack(dolist, curr_ztr); while ((curr_ztr = PopTracestack(dolist)) != NULL) { /* where we are now in the traceback. */ i = curr_ztr->emitl; j = curr_ztr->emitr; /* dummy END state on trace tree leaves. */ if (i > j) curr_ztr->type = uEND_ST; /* never executes. */ /* watch out for diagonal, where j-1,i+1 is nonsense */ else if (i == j) /* default to push-left; i is explained */ { curr_ztr->type = MATL_NODE; curr_ztr->nxtl->emitl = i+1; curr_ztr->nxtl->emitr = j; } else if (j-1 == i && zmat[j][i] == mxy[j][i]) { curr_ztr->type = MATP_NODE; curr_ztr->nxtl->emitl = i+1; curr_ztr->nxtl->emitr = j-1; } else if (zmat[j][i] == zmat[j-1][i+1] + mxy[j][i]) { curr_ztr->type = MATP_NODE; if (j-1 >= i+1) PushTracestack(dolist, AttachTrace(curr_ztr, NULL, i+1, j-1, -1,-1)); else { curr_ztr->nxtl->emitl = i+1; curr_ztr->nxtl->emitr = j-1; } } else if (zmat[j][i] == zmat[j][i+1]) { curr_ztr->type = MATL_NODE; if ( j >= i+1) PushTracestack(dolist, AttachTrace(curr_ztr, NULL, i+1, j, -1,-1)); else { curr_ztr->nxtl->emitl = i+1; curr_ztr->nxtl->emitr = j; } } else if (zmat[j][i] == zmat[j-1][i]) { curr_ztr->type = MATR_NODE; if ( j-1 >= i) PushTracestack(dolist, AttachTrace(curr_ztr, NULL, i, j-1, -1,-1)); else { curr_ztr->nxtl->emitl = i; curr_ztr->nxtl->emitr = j-1; } } else { for (mid = i+1; mid < j-1; mid++) if (zmat[j][i] == zmat[mid][i] + zmat[j][mid+1]) { struct trace_s *branch; /* the current node is a bifurc node */ curr_ztr->type = BIFURC_NODE; /* it will connect to BEGIN-SEGMENT * nodes on either side, which are followed * by normal segments again */ /* right branch */ branch = AttachTrace(curr_ztr, NULL, mid+1, j, -1, BEGINR_NODE); if (mid+1 <= j) PushTracestack(dolist, AttachTrace(branch, NULL, mid+1, j, -1,-1)); else { branch->nxtl->emitl = mid+1; branch->nxtl->emitr = j; } /* left branch */ branch = AttachTrace(curr_ztr, NULL, i, mid, -1, BEGINL_NODE); if (i <= mid) PushTracestack(dolist, AttachTrace(branch, NULL, i, mid, -1,-1)); else { branch->nxtl->emitl = i; branch->nxtl->emitr = mid; } break; } } /* clean up current node: deal with insertions */ if (curr_ztr->type == MATP_NODE) { if (gapfq[i] > gapthresh && gapfq[j] > gapthresh) DeleteTracenode(curr_ztr, NULL); else if (gapfq[i] > gapthresh) curr_ztr->type = MATR_NODE; else if (gapfq[j] > gapthresh) curr_ztr->type = MATL_NODE; } else if ( (curr_ztr->type == MATR_NODE && gapfq[j] > gapthresh) || (curr_ztr->type == MATL_NODE && gapfq[i] > gapthresh)) DeleteTracenode(curr_ztr, NULL); } FreeTracestack(dolist); *ret_ztr = ztr; } #ifdef DEBUG static void dump_mixy(int **mxy, int alen) { int i, j; for (j = 1; j < alen; j++) { for (i = 0; i < j; i++) printf("%6d", mxy[j][i]); puts("\n"); } } static void dump_zmat(int **zmat, int alen) { int i, j; for (j = 0; j < alen; j++) { for (i = 0; i <= j; i++) printf("%6d", zmat[j][i]); puts("\n"); } } static void dump_ztr(struct trace_s *ztr) { struct tracestack_s *dolist; struct trace_s *curr; dolist = InitTracestack(); PushTracestack(dolist, ztr->nxtl); while ((curr = PopTracestack(dolist)) != NULL) { printf("## ZTR STATE %#x\n", curr); printf("emitl : %d\n", curr->emitl); printf("emitr : %d\n", curr->emitr); printf("nodeidx : %d\n", curr->nodeidx); printf("type : %d\n", curr->type); if (curr->nxtl != NULL) printf("nxtl : %#x\n", curr->nxtl); else printf("nxtl : NULL\n"); if (curr->nxtr != NULL) printf("nxtr : %#x\n", curr->nxtr); else printf("nxtr : NULL\n"); if (curr->nxtr != NULL) PushTracestack(dolist, curr->nxtr); if (curr->nxtl != NULL) PushTracestack(dolist, curr->nxtl); } FreeTracestack(dolist); } #endif tRNAscan-SE-2.0/src/konings.c0000644000543100007160000002124011021467304015232 0ustar pchanlowelab/* konings.c * 1.0: SRE, Wed Jul 7 08:53:37 1993 * adapted for 2.0: SRE, Thu Sep 9 13:38:13 1993 * * Representation of secondary structure and secondary structural * alignments using Danielle Konings' string notation, and Hogeweg's * mountain notation. * * See: Konings and Hogeweg, J. Mol. Biol. 207:597-614 1989 */ #include #include #include #include #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: Align2kh() * * Purpose: Convert an alignment (align_s linked list) into * a secondary structure string. The symbols used * are > and < for the two sides of a MATP; '.' * for other symbols. * * Also may return the "aligned" sequence; this * sequence is only aligned in the sense that deleted * consensus positions are represented as '.' * and insert positions are lower case. * * Either ret_aseq or ret_khseq may be passed as NULL * if you don't want one of them. */ int Align2kh(struct align_s *ali, char **ret_aseq, char **ret_khseq) { struct align_s *curr; /* ptr into alignment list */ char *aseq; /* RETURN: aligned seq */ char *khseq; /* RETURN: structure string */ int len; /* length of alignment, khseq */ int pos; /* position in khseq */ /* Count the length of the list and malloc for khseq. */ len = 0; for (curr = ali->nxt; curr->nxt != NULL; curr = curr->nxt) len++; if ((khseq = (char *) malloc ((len+1) * sizeof(char))) == NULL || (aseq = (char *) malloc ((len+1) * sizeof(char))) == NULL) Die("Memory allocation failed, line %d of %s", __LINE__, __FILE__); /* This used to be harder. Now align_s already has a field for * secondary structure annotation, and we just have to copy it. */ pos = 0; for (curr = ali->nxt; curr->nxt != NULL; curr = curr->nxt) { switch (curr->type) { case uBEGIN_ST: case uBIFURC_ST: break; /* neither should appear in an align_s! */ case uDEL_ST: khseq[pos] = ' '; aseq[pos] = '-'; break; case uINSL_ST: case uINSR_ST: khseq[pos] = curr->ss; aseq[pos] = sre_tolower(curr->sym); break; case uMATL_ST: case uMATR_ST: case uMATP_ST: khseq[pos] = curr->ss; aseq[pos] = sre_toupper(curr->sym); break; default: Die("unrecognized state type %d in Align2kh()", curr->type); } pos++; } khseq[pos] = '\0'; aseq[pos] = '\0'; if (ret_khseq == NULL) free(khseq); else *ret_khseq = khseq; if (ret_aseq == NULL) free(aseq); else *ret_aseq = aseq; return 1; } /* Function: PrintAliLandscape() * * Purpose: Print an alignment of sequence to model in the form * of a Konings/Hogeweg "mountain". */ int PrintAliLandscape(FILE *fp, struct cm_s *cm, struct align_s *ali) { int altitude; /* current height on the mountain */ struct align_s *curr; /* ptr to current ali element */ struct align_s *prev; /* ptr to previous ali element */ int i; altitude = 0; prev = NULL; for (curr = ali->nxt; curr->nxt != NULL; curr = curr->nxt) { if (curr->pos >= 0) fprintf(fp, "%4d %c ", curr->pos+1, curr->sym); else fprintf(fp, " %c ", curr->sym); for (i = 0; i < altitude; i++) fputc(' ', fp); switch (curr->type) { case uBEGIN_ST: case uBIFURC_ST: break; case uDEL_ST: fputs(" DEL ", fp); break; case uINSL_ST: fputs("` INSL", fp); break; case uINSR_ST: fputs("\' INSR", fp); break; case uMATL_ST: fputs("\\ MATL", fp); break; case uMATR_ST: fputs("/ MATR", fp); break; case uMATP_ST: if (prev == NULL || curr->nodeidx > prev->nodeidx) { fputs(" v MATP", fp); altitude++; } else { fputs("^ MATP", fp); altitude--; } break; default: Die("unrecognized state type %d in PrintAliLandscape()", curr->type); } printf(" %d\n", curr->nodeidx); prev = curr; } return 1; } /* Function: Trace2KHS() * * Purpose: From a traceback tree of seq, produce a * secondary structure string. ">" and "<" are * used for pairwise emissions; "." for single-stranded stuff. * Note that structure is defined by pairwise emissions, * not by Watson-Crick-isms and stacking rules. * * Args: tr - traceback structure * seq - sequence, 0..rlen-1 * rlen - length of seq and returned ss string * watsoncrick - TRUE to annotate canonical pairs only * ret_ss - RETURN: alloc'ed secondary structure string * * Return: ret_ss contains a string 0..rlen-1 containing the * secondary structure. Must be free'd by caller. */ void Trace2KHS(struct trace_s *tr, char *seq, int rlen, int watsoncrick, char **ret_ss) { struct tracestack_s *dolist; struct trace_s *curr; char *ss; if ((ss = (char *) malloc (sizeof(char) * rlen+1)) == NULL) Die("malloc failed"); memset(ss, '.', rlen); ss[rlen] = '\0'; dolist = InitTracestack(); PushTracestack(dolist, tr->nxtl); while ((curr = PopTracestack(dolist)) != NULL) { if ( curr->type == uMATP_ST ) { if (! watsoncrick || IsRNAComplement(seq[curr->emitl], seq[curr->emitr], TRUE)) { ss[curr->emitl] = '>'; ss[curr->emitr] = '<'; } } if (curr->nxtr) PushTracestack(dolist, curr->nxtr); if (curr->nxtl) PushTracestack(dolist, curr->nxtl); } FreeTracestack(dolist); *ret_ss = ss; } /* Function: IsRNAComplement() * * Purpose: Returns TRUE if sym1, sym2 are Watson-Crick complementary. * If allow_gu is TRUE, GU pairs also return TRUE. */ int IsRNAComplement(char sym1, char sym2, int allow_gu) { sym1 = toupper(sym1); sym2 = toupper(sym2); if (sym1 == 'T') sym1 = 'U'; if (sym2 == 'T') sym2 = 'U'; if ((sym1 == 'A' && sym2 == 'U') || (sym1 == 'C' && sym2 == 'G') || (sym1 == 'G' && sym2 == 'C') || (sym1 == 'U' && sym2 == 'A') || (allow_gu && sym1 == 'G' && sym2 == 'U') || (allow_gu && sym1 == 'U' && sym2 == 'G')) return TRUE; else return FALSE; } /* Function: KHS2ct() * * Purpose: Convert a secondary structure string to an array of integers * representing what position each position is base-paired * to (0..len-1), or -1 if none. This is off-by-one from a * Zuker .ct file representation. * * The .ct representation can accomodate pseudoknots but the * secondary structure string cannot easily; the string contains * "Aa", "Bb", etc. pairs as a limited representation of * pseudoknots. The string contains "><" for base pairs. * Other symbols are ignored. If allow_pseudoknots is FALSE, * the pseudoknot symbols will be ignored and these positions * will be treated as single stranded. * * Return: ret_ct is allocated here and must be free'd by caller. * Returns 1 on success, 0 if ss is somehow inconsistent. */ int KHS2ct(char *ss, int len, int allow_pseudoknots, int **ret_ct) { struct intstack_s *dolist[27]; int *ct; int i; int pos, pair; int status = 1; /* success or failure return status */ for (i = 0; i < 27; i++) dolist[i] = InitIntStack(); if ((ct = (int *) malloc (len * sizeof(int))) == NULL) Die("malloc failed"); for (pos = 0; pos < len; pos++) ct[pos] = -1; for (pos = 0; ss[pos] != '\0'; pos++) { if (ss[pos] > 127) status = 0; /* bulletproof against SGI buggy ctype.h */ else if (ss[pos] == '>') /* left side of a pair: push onto stack 0 */ PushIntStack(dolist[0], pos); else if (ss[pos] == '<') /* right side of a pair; resolve pair */ { if (! PopIntStack(dolist[0], &pair)) { status = 0; } else { ct[pos] = pair; ct[pair] = pos; } } /* same stuff for pseudoknots */ else if (allow_pseudoknots && isupper((int) ss[pos])) PushIntStack(dolist[ss[pos] - 'A' + 1], pos); else if (allow_pseudoknots && islower((int) ss[pos])) { if (! PopIntStack(dolist[ss[pos] - 'a' + 1], &pair)) { status = 0; } else { ct[pos] = pair; ct[pair] = pos; } } else if (allow_pseudoknots && !isgap(ss[pos])) status = 0; /* bad character */ } for (i = 0; i < 27; i++) if ( FreeIntStack(dolist[i]) > 0) status = 0; *ret_ct = ct; return status; } tRNAscan-SE-2.0/src/lengthdist.c0000644000543100007160000001246211021467304015735 0ustar pchanlowelab/* lengthdist.c * SRE, Fri Sep 30 09:51:14 1994 * * Calculate length distributions expected at each state. */ #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif #ifdef DEBUG #include #endif /* Function: LengthDistribution() * * Purpose: Given a covariance model, calculate the * length distribution that we expect each state * to be aligned to. Uses a full forward * (summed probabilities) calculation. * * Args: cm - covariance model (probability form) * N - maximum length to look at. * ret_lmx - RETURN: (0..M-1) by (0..N) matrix of probabilities * for states 0..M-1 emitting lengths of (0..N). * * Return: (void) * ret_lmx is alloc'ed here. Free2DArray(*ret_lmx, M) */ void LengthDistribution(struct pstate_s *pcm, int statenum, int N, double ***ret_lmx) { double **lmx; int y, len; int ynext; int mid; /* Allocate the matrix for storing probability * distributions. */ lmx = (double **) MallocOrDie(statenum * sizeof(double *)); for (y = 0; y < statenum; y++) lmx[y] = (double *) MallocOrDie ( (N+1) * sizeof(double)); /* Set whole thing to zero. */ for (y = 0; y < statenum; y++) for (len = 0; len <= N; len++) lmx[y][len] = 0.0; /* Initialize at length = 0. */ for (y = statenum-1; y >= 0; y--) switch (pcm[y].statetype) { case uEND_ST: lmx[y][0] = 1.0; break; case uBIFURC_ST: lmx[y][0] = lmx[y+1][0] * lmx[pcm[y].bifr][0]; break; case uDEL_ST: case uBEGIN_ST: for (ynext = 0; ynext < pcm[y].connectnum; ynext++) lmx[y][0] += pcm[y].tmx[ynext] * lmx[y + pcm[y].offset + ynext][0]; break; } /* Recurse for lengths 1..N. */ for (len = 1; len <= N; len++) for (y = statenum-1; y >= 0; y--) switch (pcm[y].statetype) { case uEND_ST: break; case uBIFURC_ST: for (mid = 0; mid <= len; mid++) lmx[y][len] += lmx[y+1][mid] * lmx[pcm[y].bifr][len-mid]; break; case uDEL_ST: case uBEGIN_ST: for (ynext = 0; ynext < pcm[y].connectnum; ynext++) lmx[y][len] += pcm[y].tmx[ynext] * lmx[y + pcm[y].offset + ynext][len]; break; case uMATP_ST: if (len > 1) for (ynext = 0; ynext < pcm[y].connectnum; ynext++) lmx[y][len] += pcm[y].tmx[ynext] * lmx[y + pcm[y].offset + ynext][len-2]; break; case uMATR_ST: case uMATL_ST: case uINSL_ST: case uINSR_ST: for (ynext = 0; ynext < pcm[y].connectnum; ynext++) lmx[y][len] += pcm[y].tmx[ynext] * lmx[y + pcm[y].offset + ynext][len-1]; break; default: Die("unrecognized state type %d", pcm[y].statetype); } *ret_lmx = lmx; return; } /* Function: LengthBounds() * * Purpose: Takes the probability distributions produced by * LengthDistribution() and produces a set of * minimum and maximum length bounds, within which * lies a specified amount of the probability. * * The algorithm is simple. Find the peak of the * probability distribution and include it. Then * look left and right; choose whichever one is * higher P, and include it. Continue until the * included probability exceeds the target. * * Args: lmx: probability distributions from LengthDistribution() * statenum: # of rows in lmx * N: max length (lmx is [0..statenum-1[0..N]) * epsilon: target probability is 1.0 - epsilon. * ret_min: RETURN: [0..statenum-1] array of minimum * lengths for each state * ret_max: RETURN: [0..statenum-1] array of maximum * lengths for each state * * Return: (void) * ret_min, ret_max alloced here. free(). */ void LengthBounds(double **lmx, int statenum, int N, double epsilon, int **ret_min, int **ret_max) { int *min, *max; int y, len; int cmin, cmax; /* current min and max */ double best; double p_remain; min = (int *) MallocOrDie (sizeof(int) * statenum); max = (int *) MallocOrDie (sizeof(int) * statenum); for (y = 0; y < statenum; y++) { /* danger! assuming that N was large enough! */ DNorm(lmx[y], (N+1)); /* step 1. find peak */ best = lmx[y][0]; cmin = 0; for (len = 1; len <= N; len++) if (lmx[y][len] > best) { best = lmx[y][len]; cmin = len; } /* that's where we start */ cmax = cmin; p_remain = 1.0 - lmx[y][cmin]; /* extend to find bounds */ while (p_remain > epsilon) { if (cmin == 0 && cmax == N) break; /* Die("state %d distribution not within set bound of %d; %f remains\n", y, N, p_remain); */ else if (cmin == 0) /* must look right */ p_remain -= lmx[y][++cmax]; else if (cmax == N) /* must look left */ p_remain -= lmx[y][--cmin]; else /* look left and right */ { if (lmx[y][cmin-1] > lmx[y][cmax+1]) p_remain -= lmx[y][--cmin]; else p_remain -= lmx[y][++cmax]; } } min[y] = cmin; max[y] = cmax; } *ret_min = min; *ret_max = max; } tRNAscan-SE-2.0/src/structs.h0000644000543100007160000002103211021467306015277 0ustar pchanlowelab#ifndef STRUCTSH_INCLUDED #define STRUCTSH_INCLUDED /* structs.h - declarations of data structures * SRE, Tue Aug 31 15:17:12 1993 */ #include "squid.h" /* Alphabet information. * The package is designed to be configurable for protein analysis * just by changing these define's. Dunno if it would be *useful* * to apply it to protein work -- but the possibility's there. */ #define ALPHATYPE kRNA #define ALPHASIZE 4 extern char *ALPHABET; /* defined at top of misc.c */ /* * Node types. * These are used for clarity in the code, not to make it easy * to change them: the program makes assumptions about the order * they come in, so DON'T CHANGE THESE. * * Specifically, the following assumptions are made: * - that they come in *exactly* this order (static state transition array in prior.h) * - that BIFURC, MATP, MATL, MATR are all less than 4 * (second index, prior.h; also some loops in maxmodelmaker.c) * - ROOT is last (indexing of scores of mmx model construction matrix, maxmodelmaker.c) */ #define BIFURC_NODE 0 #define MATP_NODE 1 #define MATL_NODE 2 #define MATR_NODE 3 #define BEGINL_NODE 4 #define BEGINR_NODE 5 #define ROOT_NODE 6 #define NODETYPES 7 /* number of different node types */ #define END_NODE BIFURC_NODE /* * State types. * These are used for clarity in the code, not to make it easy * to change them: the program makes assumptions about the order * they come in, so DON'T CHANGE THESE. */ #define DEL_ST 0 #define MATP_ST 1 #define MATL_ST 2 #define MATR_ST 3 #define INSL_ST 4 #define INSR_ST 5 #define STATETYPES 6 /* MATP nodes contain 6 states */ #define BEGIN_ST DEL_ST #define BIFURC_ST DEL_ST #define END_ST DEL_ST /* Unique identifiers for state types, used as flags not indexes * in the alignment algorithms. */ #define uDEL_ST (1<<0) #define uMATP_ST (1<<1) #define uMATL_ST (1<<2) #define uMATR_ST (1<<3) #define uINSL_ST (1<<4) #define uINSR_ST (1<<5) #define uBEGIN_ST (1<<6) #define uEND_ST (1<<7) #define uBIFURC_ST (1<<8) /* Structure: node_s * * Purpose: Contains all the information necessary to describe a node. */ struct node_s { int type; double tmx[STATETYPES][STATETYPES]; /* up to 49 transition probs */ double mp_emit[ALPHASIZE][ALPHASIZE]; /* 4x4 MATP emission probs */ double il_emit[ALPHASIZE]; /* 4 INSL emission probs */ double ir_emit[ALPHASIZE]; /* 4 INSR emission probs */ double ml_emit[ALPHASIZE]; /* 4 MATL emission probs */ double mr_emit[ALPHASIZE]; /* 4 MATR emission probs */ int nxt; /* connection to left child */ int nxt2; /* connection to right child */ }; /* Structure: cm_s * * Purpose: A covariance model. */ struct cm_s { int nodes; /* number of nodes */ struct node_s *nd; /* array of nodes 0..nodes-1 */ }; /* Structure: istate_s * * In the alignment algorithms, a CM is converted to an array of states, * each represented by one of these structures. Each state contains * probability info as integers instead of floating point. * * The order of the state transition vector is different than in * the CM. INSL and INSR are first: INSL, INSR, DEL, MATP, MATL, MATR. */ struct istate_s { int nodeidx; /* index of node this state belongs to */ int statetype; /* unique id for type of this state (uMATP_ST, etc.) */ int offset; /* offset in state array to first INS state */ int connectnum; /* number of elements in tmx */ int tmx[STATETYPES]; /* rearranged transition vector, int log-odds */ int emit[ALPHASIZE*ALPHASIZE]; /* int lod emission vector (4 or 16) or NULL */ }; struct pstate_s { int nodeidx; /* index of node this state belongs to */ int statetype; /* unique id for type of this state (uMATP_ST, etc.) */ int offset; /* offset in state array to first INS state */ int connectnum; /* number of elements in tmx */ int bifr; /* (uBIF_ST only) index of right connection */ double tmx[STATETYPES]; /* rearranged transition vector */ double emit[ALPHASIZE*ALPHASIZE]; /* emission vector (4 or 16) or NULL */ }; /* Structure: prior_s * * Purpose: Contains the prior probability distributions for * state transitions and symbol emissions, as well * as the alpha "confidence" values applied during * regularization, and alphabet information. */ struct prior_s { double tprior[7][4][STATETYPES][STATETYPES]; /* state transitions */ double matp_prior[ALPHASIZE][ALPHASIZE]; /* MATP_ST emissions */ double matl_prior[ALPHASIZE]; /* MATL_ST emissions */ double matr_prior[ALPHASIZE]; /* MATR_ST emissions */ double insl_prior[ALPHASIZE]; /* INSL_ST emissions */ double insr_prior[ALPHASIZE]; /* INSR_ST emissions */ double talpha[STATETYPES]; /* alpha's for state transitions */ double emalpha[STATETYPES]; /* alpha's for symbol emissions */ double rfreq[ALPHASIZE]; /* background symbol freqs for random model */ }; /* Structure: trace_s * * Binary tree structure for storing a traceback of an alignment; * also used for tracebacks of model constructions. */ struct trace_s { int emitl; /* i position (1..N) or 0 if nothing */ int emitr; /* j position (1..N) or 0 if nothing */ int nodeidx; /* index of node responsible for this alignment */ int type; /* type of substate (uMATP_ST, etc.) used (unique) */ struct trace_s *nxtl; /* ptr to left (or only) branch, or NULL for end */ struct trace_s *nxtr; /* ptr to right branch, BIFURC only, else NULL */ struct trace_s *prv; /* ptr to parent */ }; /* Structure: trmem_s * * It's expensive in malloc()'s to build trace trees. This structure * allows trace.c to cut down malloc overhead, by keeping a pool * of trace_s structures. */ struct trmem_s { int next; /* index of next trace_s to use in pool */ int num; /* how many trace_s total in pool */ struct trace_s *pool; /* alloced array of trace_s structs */ struct tracestack_s *used; /* old (fully used) pools, waiting to be freed */ }; #define TMEM_BLOCK 256 /* how many trace_s to alloc per malloc() call */ /* Structure: tracestack_s * * Formerly a pushdown stack used for traversing a binary tree of trace_s structures. * Reimplemented as an array for malloc efficiency. */ struct tracestack_s { int next; /* index of next trace_s pointer to use */ int num; /* number of trace_s pointers alloc'ed */ struct trace_s **list; /* array of trace_s pointers */ }; #define TSTACK_BLOCK 64 /* A struct align_s implements a linked list describing the alignment * of a model to a sequence. Note that this is the inverse of what * trace_s trees are for; align_s is a linear representation of * the alignment (from the sequence's point of view, if you will) */ struct align_s { int pos; /* pos in seq emitted (0..N-1; -1 if none) */ char sym; /* symbol emitted (ACGU, . if none) */ char ss; /* secondary structure character, <>. */ int nodeidx; /* index of model state aligned to this position */ int type; /* type of substate reponsible for this emission (unique) */ struct align_s *nxt; }; /* A struct m2ali_s implements a pushdown stack used for traversing * a model and producing an align_s alignment list. */ struct m2ali_s { int nodeidx; /* index of position in model (0..M) */ int type; /* subtype of position in model */ struct align_s *after; /* position in align_s list */ struct m2ali_s *nxt; }; /* A struct t2ali_s implements a pushdown stack for traversing a * traceback tree and producing an align_s alignment list. */ struct t2ali_s { struct trace_s *tracenode; struct align_s *after; struct t2ali_s *nxt; }; /* some stuff used when we store sums of log scores as integers, * for speed and precision */ #define INTPRECISION 1000.0 /* pick up three decimal places in our ints */ #define NEGINFINITY -999999 /* -999.999 is small enough for -Inf */ #define POSINFINITY 999999 /* +999.999 is large enough for +Inf */ #define ILOG2(a) (((a) > 0.0) ? (log(a) / 0.69314718 * INTPRECISION) : NEGINFINITY) #endif /* STRUCTSH_INCLUDED */ tRNAscan-SE-2.0/src/emit.c0000644000543100007160000003736311021467304014535 0ustar pchanlowelab/* emit.c * 1.0: Fri Jun 11 12:59:33 1993 * 2.0: SRE, Thu Sep 9 13:44:18 1993 * * generate sequences randomly from a model. * * The growing sequence is kept as a linked list (align_s). * The model tree is traversed by pushing nodes onto a stack * (m2ali_s). The information kept for each active node * is nodeidx, state type, and a pointer into the growing linked * list where the next emissions should go. * * The recursion is to pop an active node off; * then, switch (statetype) * MATP: pick symbol pair. insert right symbol. insert * left symbol. new insertion pointer on left symbol. * INSL, MATL: pick symbol. insert symbol. new insertion pointer * on new symbol. * INSR, MATR: pick symbol. insert symbol. new insertion pointer * stays where it was. * BIFURC: insert dummy symbol. one new insertion pointer * stays where it was (BIFL), other points to the * new dummy (BIFR). * DELETE: no symbol. new insertion pointer stays where it * was. */ #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static void pick_transit(struct cm_s *cm, int oldidx, int oldtype, int *ret_newidx, int *ret_newtype); static void pick_double_emit(struct cm_s *cm, int nodeidx, char *ret_syml, char *ret_symr); static void pick_single_emit(struct cm_s *cm, int nodeidx, int type, char *ret_sym); static void pick_best_transit(struct cm_s *cm, int oldidx, int oldtype, int *ret_newidx, int *ret_newtype); static void pick_best_double(struct cm_s *cm, int nodeidx, char *ret_syml, char *ret_symr); static void pick_best_single(struct cm_s *cm, int nodeidx, int type, char *ret_sym); /* Function: EmitSequence() * * Purpose: Generate a sequence probabilistically from a model. * The returned sequence contains upper case letters * for MATCH-generated positions, lower case letters * for INSERT-generated positions. * * Caller is reponsible for free'ing memory allocated * to the sequence. * */ int EmitSequence(struct cm_s *cm, /* model */ int watsoncrick,/* if TRUE, annotate only canonical pairs */ struct align_s **ret_ali, /* RETURN: generated "alignment" */ char **ret_khseq, /* RETURN: generated structure */ char **ret_seq) /* RETURN: generated sequence */ { struct m2ali_s *emstack; struct align_s *emlist; int oldidx; int oldtype; struct align_s *oldafter; int newidx; int newtype; struct align_s *newafter; char syml; char symr; int pos; char *seq; char *khseq; char ssl, ssr; /* secondary structure annotation */ /* Initialize the linked list of emitted sequence, emlist. */ emlist = Init_align(); /* Initialize the pushdown stack for traversing the model, * emstack. */ emstack = Init_m2ali(); pick_transit(cm, 0, uBEGIN_ST, &newidx, &newtype); Push_m2ali(emstack, newidx, newtype, emlist); /* While there's still active model nodes in the stack, * pop one off and deal with it. */ while (Pop_m2ali(emstack, &oldidx, &oldtype, &oldafter)) { /* look out for end */ if (oldidx == -1) continue; /* check for BIFURC, which makes automatic transits to BEGIN states * of next two segments. */ if (cm->nd[oldidx].type == BIFURC_NODE) { /* deal with right branch */ newafter = Insafter_align(0, '-', ' ', oldidx, uBIFURC_ST, oldafter); /* insert a dummy */ Push_m2ali(emstack, cm->nd[oldidx].nxt2, uBEGIN_ST, newafter); /* deal with left branch */ Push_m2ali(emstack, cm->nd[oldidx].nxt, uBEGIN_ST, oldafter); } else { switch (oldtype) { case uDEL_ST: pick_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(emstack, newidx, newtype, oldafter); break; case uMATP_ST: pick_double_emit(cm, oldidx, &syml, &symr); if (! watsoncrick || IsRNAComplement(syml, symr, TRUE)) { ssl = '>'; ssr = '<'; } else { ssl = ssr = '.'; } (void) Insafter_align(0, symr, ssr, oldidx, oldtype, oldafter); newafter = Insafter_align(0, syml, ssl, oldidx, oldtype, oldafter); pick_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(emstack, newidx, newtype, newafter); break; case uINSL_ST: case uMATL_ST: pick_single_emit(cm, oldidx, oldtype, &syml); newafter = Insafter_align(0, syml, '.', oldidx, oldtype, oldafter); pick_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(emstack, newidx, newtype, newafter); break; case uINSR_ST: case uMATR_ST: pick_single_emit(cm, oldidx, oldtype, &symr); (void) Insafter_align(0, symr, '.', oldidx, oldtype, oldafter); pick_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(emstack, newidx, newtype, oldafter); break; default: Die("Unrecognized state type %d in model.", oldtype); } } } Free_m2ali(emstack); /* Now go through and write the correct 'pos' fields in *emlist, * because the caller might expect them for some reason. */ pos = 0; for (newafter = emlist->nxt; newafter->nxt != NULL; newafter = newafter->nxt) { if (newafter->type == uDEL_ST) newafter->pos = -1; else { newafter->pos = pos; pos++; } } /* Now we extract the sequence from the linked list. * For now, we leave the dummy characters in. */ if (! Align2kh(emlist, &seq, &khseq)) Warn("Align2kh() failed"); *ret_ali = emlist; *ret_khseq = khseq; *ret_seq = seq; return 1; } /* Function: EmitBestSequence() * * Purpose: Generate the most probable sequence from a model by picking * the most probable transitions and emissions. * Very similar to EmitSequence(), above. * */ int EmitBestSequence(struct cm_s *cm, /* model */ int watsoncrick, /* if TRUE, annotate only canonical pairs */ struct align_s **ret_ali, /* RETURN: generated "alignment" */ char **ret_khseq, /* RETURN: generated structure */ char **ret_seq) /* RETURN: generated sequence */ { struct align_s *ali; /* generated "alignment" linked list */ struct align_s *curr; /* ptr to current insertion pt in ali */ struct align_s *new; /* ptr to newly inserted pt in ali */ struct m2ali_s *stack; /* pushdown stack for traversing model */ int oldidx; /* stateidx of current insertion pt in ali */ int oldtype; /* subtype of current insertion pt in ali */ int newidx; /* stateidx of newly inserted pt in ali */ int newtype; /* subtype of newly inserted pt in ali */ char syml; /* emitted symbol to the left */ char symr; /* emitted symbol to the right */ int pos; /* position in seq */ char *seq; /* RETURN: generated most probable sequence*/ char *khseq; /* RETURN: structure rep. of seq */ char ssl, ssr; /* secondary structure annotation */ /* Initialize the linked list of emitted sequence, ali */ ali = Init_align(); /* Initialize the pushdown stack for traversing the model */ stack = Init_m2ali(); pick_best_transit(cm, 0, uBEGIN_ST, &newidx, &newtype); Push_m2ali(stack, newidx, newtype, ali); /* While there's still active model nodes in the stack, * pop one off and deal with it. */ while (Pop_m2ali(stack, &oldidx, &oldtype, &curr)) { /* look out for end */ if (oldidx == -1) continue; /* check for BIFURC, which makes automatic transits to BEGIN states * of next two segments. */ if (cm->nd[oldidx].type == BIFURC_NODE) { /* deal with right branch */ new = Insafter_align(0, '-', ' ', oldidx, uBIFURC_ST, curr); /* insert a dummy */ Push_m2ali(stack, cm->nd[oldidx].nxt2, uBEGIN_ST, new); /* deal with left branch */ Push_m2ali(stack, cm->nd[oldidx].nxt, uBEGIN_ST, curr); } else { switch (oldtype) { case uDEL_ST: pick_best_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(stack, newidx, newtype, curr); break; case uMATP_ST: pick_best_double(cm, oldidx, &syml, &symr); if (! watsoncrick || IsRNAComplement(syml, symr, TRUE)) { ssl = '>'; ssr = '<'; } else { ssl = '.'; ssr = '.'; } (void) Insafter_align(0, symr, ssr, oldidx, oldtype, curr); new = Insafter_align(0, syml, ssl, oldidx, oldtype, curr); pick_best_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(stack, newidx, newtype, new); break; case uINSL_ST: case uMATL_ST: pick_best_single(cm, oldidx, oldtype, &syml); new = Insafter_align(0, syml, '.', oldidx, oldtype, curr); pick_best_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(stack, newidx, newtype, new); break; case uINSR_ST: case uMATR_ST: pick_best_single(cm, oldidx, oldtype, &symr); (void) Insafter_align(0, symr, '.', oldidx, oldtype, curr); pick_best_transit(cm, oldidx, oldtype, &newidx, &newtype); Push_m2ali(stack, newidx, newtype, curr); break; default: Die("Unrecognized state type %d in model.", oldtype); } } } Free_m2ali(stack); /* Now go through and write the correct 'pos' fields in *ali, * because the caller might expect them for some reason. */ pos = 0; for (curr = ali->nxt; curr->nxt != NULL; curr = curr->nxt) { if (curr->type == uDEL_ST) curr->pos = -1; else { curr->pos = pos; pos++; } } /* Now we extract the sequence from the linked list. * For now, we leave the dummy characters in. */ if (! Align2kh(ali, &seq, &khseq)) Warn("Align2kh() failed"); *ret_ali = ali; *ret_khseq = khseq; *ret_seq = seq; return 1; } /* Function: pick_transit() * * Purpose: Pick a random state transition, given a current state * (specified by a stateidx and a subtype). Pass back * the new state (newidx, newtype). */ static void pick_transit(struct cm_s *cm, int oldidx, int oldtype, int *ret_newidx, int *ret_newtype) { int newidx; int newtype; double sum; double roll; /* Picking a new subtype involves rolling a random * fraction and examining the appropriate row of the * 7x7 state transition matrix. */ sum = 0.0; roll = sre_random(); for (newtype = 0; newtype < STATETYPES; newtype++) { sum += cm->nd[oldidx].tmx[oldtype][newtype]; if (roll <= sum) break; } if (newtype == STATETYPES) Die("Failed to transit from stateidx %d subtype %d, roll %.2f", oldidx, oldtype, roll); /* Picking a new nodeidx is a function of the current * state type. This function should never be called for BIFURCs. */ if (newtype == INSL_ST || newtype == INSR_ST) newidx = oldidx; else newidx = cm->nd[oldidx].nxt; *ret_newidx = newidx; *ret_newtype = UniqueStatetype(cm->nd[newidx].type, newtype); } /* Function: pick_double_emit() * * Purpose: Given a model and a current state (stateidx, subtype), * which must be an INSC or MATC, pick a pairwise emission * (syml, symr) according to the probabilities in the * appropriate emission matrix. */ static void pick_double_emit(struct cm_s *cm, int nodeidx, char *ret_syml, char *ret_symr) { double sum; double roll; int i, j; sum = 0.0; roll = sre_random(); for (i = 0; i < ALPHASIZE; i++) for (j = 0; j < ALPHASIZE; j++) { sum += cm->nd[nodeidx].mp_emit[i][j]; if (roll <= sum) goto breakout; } breakout: *ret_syml = ALPHABET[i]; *ret_symr = ALPHABET[j]; } /* Function: pick_single_emit() * * Purpose: Given a model and a current state (nodeidx, type), * which must be an INS(L/R) or MAT(L/R), pick an emission * (sym) according to the probabilities in the * appropriate emission vector. */ static void pick_single_emit(struct cm_s *cm, int nodeidx, int type, char *ret_sym) { double sum; double roll; int i; double *emit; /* find correct emission vector */ switch (type) { case uINSL_ST: emit = cm->nd[nodeidx].il_emit; break; case uINSR_ST: emit = cm->nd[nodeidx].ir_emit; break; case uMATL_ST: emit = cm->nd[nodeidx].ml_emit; break; case uMATR_ST: emit = cm->nd[nodeidx].mr_emit; break; default: Die("can't single emit from state type %d", type); } sum = 0.0; roll = sre_random(); for (i = 0; i < ALPHASIZE; i++) { sum += emit[i]; if (roll <= sum) break; } *ret_sym = ALPHABET[i]; } /* Function: pick_best_transit() * * Purpose: Pick most probable state transition, given a current state * (specified by a nodeidx and a type). Pass back * the new state (newidx, newtype). */ static void pick_best_transit(struct cm_s *cm, int oldidx, int oldtype, int *ret_newidx, int *ret_newtype) { int y; int newidx; int newtype; double best; /* find maximum probability */ best = 0.0; for (y = 0; y < STATETYPES; y++) if (cm->nd[oldidx].tmx[oldtype][y] > best) { best = cm->nd[oldidx].tmx[oldtype][y]; newtype = y; } /* Picking a new nodeidx is a function of the current * type. This function should never be called for BIFURCs. */ if (newtype == INSL_ST || newtype == INSR_ST) newidx = oldidx; else newidx = cm->nd[oldidx].nxt; *ret_newidx = newidx; *ret_newtype = UniqueStatetype(cm->nd[newidx].type, newtype); } /* Function: pick_best_double() * * Purpose: Given a model and a current state (nodeidx, type), * (which must a MATP), pick most probable pairwise emission * (syml, symr) according to the probabilities in the * appropriate emission matrix. * */ static void pick_best_double(struct cm_s *cm, int nodeidx, char *ret_syml, char *ret_symr) { double best; int i, j; int besti, bestj; best = 0.0; for (i = 0; i < ALPHASIZE; i++) for (j = 0; j < ALPHASIZE; j++) if (cm->nd[nodeidx].mp_emit[i][j] > best) { best = cm->nd[nodeidx].mp_emit[i][j]; besti = i; bestj = j; } *ret_syml = ALPHABET[besti]; *ret_symr = ALPHABET[bestj]; } /* Function: pick_best_single() * * Purpose: Given a model and a current state (nodeidx, type), * which must be an INS(L/R) or MAT(L/R), pick most probable emission * (sym) according to the probabilities in the * appropriate emission vector. */ static void pick_best_single(struct cm_s *cm, int nodeidx, int type, char *ret_sym) { double best; int besti; int i; double *emit; /* find correct emission vector */ switch (type) { case uINSL_ST: emit = cm->nd[nodeidx].il_emit; break; case uINSR_ST: emit = cm->nd[nodeidx].ir_emit; break; case uMATL_ST: emit = cm->nd[nodeidx].ml_emit; break; case uMATR_ST: emit = cm->nd[nodeidx].mr_emit; break; default: Die("can't single emit from type %d", type); } best = 0.0; for (i = 0; i < ALPHASIZE; i++) if (emit[i] > best) { best = emit[i]; besti = i; } *ret_sym = ALPHABET[besti]; } tRNAscan-SE-2.0/src/align.c0000644000543100007160000003517611021467303014670 0ustar pchanlowelab/* align.c * SRE, Tue Jun 29 14:05:48 1993 * 2.0: Thu Sep 30 14:43:05 1993 * * Code for producing a multiple sequence alignment from tracebacks. * * */ #include #include #include #include #include "squid.h" #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif /* Function: create_master() * * Purpose: Produce a "master copy" of the linear order in * which a model's states produce a sequence. Used * for reference during alignment construction. * * This linked list is created with Init_align() * and must be free'd by Free_align(). Each structure * in the list represents a possible emission from * a match state, and contains the index of the responsible * state. The sym field is used as an internal flag * (temporary dummy structures are used for bifurc's, and * flagged in the sym field for later removal). The * pos and substate fields are not used or meaningful. ret_len * is the maximum number of symbols that can be * emitted by non-insert states. */ static int create_master(struct cm_s *cm, struct align_s **ret_master, int *ret_len) { struct m2ali_s *stack; /* stack used to traverse the model cv */ struct align_s *master; /* RETURN: maximal match emission alignment */ struct align_s *curr; int oldidx; int oldtype; struct align_s *oldafter; int newidx; int newtype; struct align_s *newafter; int len; /* Initialize the linked list of state order, master */ master = Init_align(); /* Initialize pushdown stack for traversing the model. */ stack = Init_m2ali(); newidx = (cm->nodes > 1) ? 1 : -1; newtype = uMATP_ST; /* assume 'worst' case, all nodes generate pairs */ Push_m2ali(stack, newidx, newtype, master); /* While there are still active nodes on the stack, pop one off * and deal with it. */ len = 0; while (Pop_m2ali(stack, &oldidx, &oldtype, &oldafter)) { if (oldidx == -1) continue; /* END */ if (cm->nd[oldidx].type == BIFURC_NODE) { /* deal with right branch. * Gotta insert a dummy temporarily */ newafter = Insafter_align(-1, '-', ' ', oldidx, uBIFURC_ST, oldafter); Push_m2ali(stack, cm->nd[oldidx].nxt2, uBEGIN_ST, newafter); len++; /* deal with left branch */ Push_m2ali(stack, cm->nd[oldidx].nxt, uBEGIN_ST, oldafter); } else if (cm->nd[oldidx].type == BEGINL_NODE || cm->nd[oldidx].type == BEGINL_NODE || cm->nd[oldidx].type == ROOT_NODE) { /* BEGIN's aren't reponsible for any MAT states */ Push_m2ali(stack, cm->nd[oldidx].nxt, uBEGIN_ST, oldafter); } else { (void) Insafter_align(-1, '.', ' ', oldidx, uMATP_ST, oldafter); newafter = Insafter_align(-1, '.', ' ', oldidx, uMATP_ST, oldafter); len += 2; Push_m2ali(stack, cm->nd[oldidx].nxt, uBEGIN_ST, newafter); } } /* Remove the temporary dummies used to BIFURC */ for (curr = master->nxt; curr->nxt != NULL; curr = curr->nxt) if (curr->nxt->sym == '-') { Delafter_align(curr); len--; } Free_m2ali(stack); *ret_len = len; *ret_master = master; #ifdef DEBUG /* print_align(master); */ #endif return 1; } /* Function: Trace2ali() * * Purpose: Given a traceback (tree-structure alignment of a model * to a sequence), construct a linear linked list representation * (align_s) of the sequence alignment to the model. * * Args: seq - 0..len-1 sequence to align * tr - traceback containing tree-wise alignment * watsoncrick - if TRUE, only canonical pairs get structure annotation * ret_ali - RETURN: linear list alignment */ int Trace2ali(char *seq, struct trace_s *tr, int watsoncrick, struct align_s **ret_ali) { struct align_s *ali; /* RETURN: linear list of alignment */ struct t2ali_s *stack; /* stack used to traverse the traceback tr */ struct trace_s *currtr; struct align_s *newafter; struct align_s *oldafter; struct align_s *curr; char ssl, ssr;/* symbols <.> for secondary structure rep. */ /* Initialize the linked list for the alignment of sequence to model */ ali = Init_align(); /* Initialize the pushdown stack for traversal of the traceback */ stack = Init_t2ali(); Push_t2ali(stack, tr, ali); while (Pop_t2ali(stack, &currtr, &oldafter)) { switch (currtr->type) { case END_ST: break; /* ignore END states */ case uBIFURC_ST: /* deal with right branch; insert a dummy */ newafter = Insafter_align(-1, '*', ' ', currtr->nodeidx, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtr, newafter); /* deal with left branch */ Push_t2ali(stack, currtr->nxtl, oldafter); break; case uBEGIN_ST: Push_t2ali(stack, currtr->nxtl, oldafter); break; case uDEL_ST: Insafter_align(-1, '-', '.', currtr->nodeidx, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtl, oldafter); break; case uMATP_ST: if (! watsoncrick || IsRNAComplement(seq[currtr->emitr], seq[currtr->emitl], TRUE)) { ssr = '<'; ssl = '>'; } else { ssr = '.'; ssl = '.'; } (void) Insafter_align(currtr->emitr, seq[currtr->emitr], ssr, currtr->nodeidx, currtr->type, oldafter); newafter = Insafter_align(currtr->emitl, seq[currtr->emitl], ssl, currtr->nodeidx, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtl, newafter); break; case uINSL_ST: case uMATL_ST: newafter = Insafter_align(currtr->emitl, seq[currtr->emitl], '.', currtr->nodeidx, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtl, newafter); break; case uINSR_ST: case uMATR_ST: (void) Insafter_align(currtr->emitr, seq[currtr->emitr], '.', currtr->nodeidx, currtr->type, oldafter); Push_t2ali(stack, currtr->nxtl, oldafter); break; } } /* Remove the temporary dummies used to BIFURC */ for (curr = ali->nxt; curr->nxt != NULL; curr = curr->nxt) if (curr->nxt->sym == '*') Delafter_align(curr); Free_t2ali(stack); *ret_ali = ali; #ifdef DEBUG /* print_align(ali); */ #endif return 1; } /* Function: Traces2Alignment() * * Purpose: Given a set of tracebacks for alignments of multiple sequences to * a model, construct a multiple sequence alignment. * * The tricky bit, which involves some precalculations, is allowing * the proper amount of space for insertions. */ int Traces2Alignment(char **rseqs, SQINFO *sqinfo, struct trace_s **tr, int nseq, struct cm_s *cm, int watsoncrick, /* TRUE to annotate only canonical pairs */ char ***ret_aseqs, AINFO *ainfo) { struct align_s *master; /* representation of how MAT columns map onto the model */ struct align_s **ali; /* array of align_s alignments of the sequences to model */ int *matuse; /* 0 if MAT column is never used, 1 otherwise, 1..len */ int *insuse; /* per sequence, count use of inserts between MAT columns; 0..len */ int *max_insuse; /* overall maxima, keep track of ins use between columns */ int *matpos; /* array of MAT column positions in the alignment, 1..len */ int len; /* length of master - maximum number of MAT columns */ int idx; /* counter for sequences */ struct align_s *currmaster; struct align_s *currali; int aseqlen; /* length of multiple sequence alignment */ char **aseqs; /* RETURN: multiple sequence alignment */ char **ss; /* secondary structures */ int apos; /* position in absolute alignment columns */ int matcol; /* position in MAT column coord arrays (matuse, matpos) */ /* First we use the model to calculate "master", which will define * the columns of the multiple sequence alignment (MAT-produced) and * represents how they map onto the model states. Only the stateidx field of * the align_s structures is meaningful. */ if (! create_master(cm, &master, &len)) return 0; /* Next we "invert" each traceback (from seq->model tree alignments * to model->seq linear alignments) and create an array "ali" of individual * alignments of the model to the sequences. */ if ((ali = (struct align_s **) malloc (nseq * sizeof(struct align_s *))) == NULL) { Die("Memory failure, line %d of %s", __LINE__, __FILE__); return 0; } for (idx = 0; idx < nseq; idx++) if (! Trace2ali(rseqs[idx], tr[idx], watsoncrick, &ali[idx])) return 0; /* Now we're ready to start counting MAT and INS use. * * For MAT use, all we're doing is determining whether a given * column in the master alignment is used or not (matuse[1..len] is * 1 if yes, 0 if no) * * For INS use, we are counting the maximum number of occurrences * of insert emissions between each MAT column of the master. max_insuse[0..len] * keeps these numbers. max_insuse[5] is the maximum number of inserted * symbols between columns 5 and 6, for example. Because there is * some redundancy in the model -- different INS states may emit in * the same place -- we have to first increment a counter array, insuse, * for each individual sequence. */ if (((matuse = (int *) calloc (len+1, sizeof(int))) == NULL) || ((insuse = (int *) calloc (len+1, sizeof(int))) == NULL) || ((max_insuse = (int *) calloc (len+1, sizeof(int))) == NULL) ) { Die("Memory failure, line %d of %s", __LINE__, __FILE__); return 0; } for (idx = 0; idx < nseq; idx++) { for (matcol = 0; matcol <= len; matcol++) insuse[matcol] = 0; matcol = 0; currmaster = master->nxt; for (currali = ali[idx]->nxt; currali != NULL; currali = currali->nxt) { switch (currali->type) { case uMATP_ST: case uMATR_ST: case uMATL_ST: case uDEL_ST: matcol++; while (currmaster->nodeidx != currali->nodeidx) { currmaster = currmaster->nxt; matcol++; } matuse[matcol] = 1; currmaster = currmaster->nxt; break; case uINSR_ST: case uINSL_ST: insuse[matcol]++; break; } } /* update max_insuse with new maxima, if any*/ for (matcol = 0; matcol <= len; matcol++) if (insuse[matcol] > max_insuse[matcol]) max_insuse[matcol] = insuse[matcol]; } /* calculate length of mult seq alignment, and alloc */ aseqlen = 0; for (matcol = 0; matcol <= len; matcol++) { if (matuse[matcol] == 1) aseqlen++; aseqlen += max_insuse[matcol]; } if ((aseqs = (char **) malloc (nseq * sizeof(char *))) == NULL || (ss = (char **) malloc (nseq * sizeof(char *))) == NULL) { Die("Memory failure, line %d of %s", __LINE__, __FILE__); return 0; } for (idx = 0; idx < nseq; idx++) if ((aseqs[idx] = (char *) malloc ((aseqlen+1) * sizeof(char))) == NULL || (ss[idx] = (char *) malloc ((aseqlen+1) * sizeof(char))) == NULL) { Die("Memory failure, line %d of %s", __LINE__, __FILE__); return 0; } /* Now we use matuse and max_insuse to calculate an array for the * coordinates of the MAT columns in the multiple alignment. */ if ((matpos = (int *) calloc (len+1 , sizeof(int))) == NULL) { Die("Memory failure, line %d of %s", __LINE__, __FILE__); return 0; } for (matcol = 1; matcol <= len; matcol++) matpos[matcol] = matpos[matcol-1] + max_insuse[matcol-1] + matuse[matcol-1]; /* And finally, we're ready to actually construct the multiple sequence * alignment. The resulting alignment is flushed-right with gaps. */ for (idx = 0; idx < nseq; idx++) { matcol = 0; apos = 0; currmaster = master; for (currali = ali[idx]->nxt; currali != NULL; currali = currali->nxt) { switch (currali->type) { case uMATP_ST: case uMATR_ST: case uMATL_ST: /* goes in a MAT column */ while (currmaster->nodeidx != currali->nodeidx) { currmaster = currmaster->nxt; matcol++; } for (; apos < matpos[matcol]; apos++) { aseqs[idx][apos] = '.'; ss[idx][apos] = ' '; } aseqs[idx][apos] = toupper((int)currali->sym); ss[idx][apos] = currali->ss; apos++; currmaster = currmaster->nxt; matcol++; break; case uINSR_ST: case uINSL_ST: aseqs[idx][apos] = tolower((int)currali->sym); ss[idx][apos] = currali->ss; apos++; break; case uDEL_ST: aseqs[idx][apos] = '.'; ss[idx][apos] = ' '; apos++; currmaster = currmaster->nxt; matcol++; break; } } /* flush right */ for (; apos < aseqlen; apos++) { aseqs[idx][apos] = '.'; ss[idx][apos] = ' '; } aseqs[idx][apos] = '\0'; ss[idx][apos] = '\0'; } for (idx = 0; idx < nseq; idx++) Free_align(ali[idx]); Free_align(master); free(matpos); free(max_insuse); free(insuse); free(matuse); free(ali); if (ainfo != NULL) { int leftcount; int rightcount; ainfo->flags = 0; strcpy(ainfo->au, "CM RNA automatic alignment"); ainfo->flags |= AINFO_AUTH; ainfo->alen = aseqlen; ainfo->flags |= AINFO_ALEN; /* copy sqinfo structure array */ if ((ainfo->sqinfo = (SQINFO *) malloc (sizeof(SQINFO) * nseq)) == NULL) Die("malloc failed"); for (idx = 0; idx < nseq; idx++) SeqinfoCopy(&(ainfo->sqinfo[idx]), &(sqinfo[idx])); /* Construct a consensus structure string. * Secondary structure strings, ss, are currently aligned to * the aseqs. Calculate an aligned consensus structure from * them. */ if ((ainfo->cs = (char *) malloc (sizeof(char) * (aseqlen+1))) == NULL) Die("malloc failed"); for (apos = 0; apos < aseqlen; apos ++) { leftcount = rightcount = 0; for (idx = 0; idx < nseq; idx++) if (ss[idx][apos] == '<') rightcount++; else if (ss[idx][apos] == '>') leftcount++; if (rightcount > nseq / 2) ainfo->cs[apos] = '<'; else if (leftcount > nseq / 2) ainfo->cs[apos] = '>'; else ainfo->cs[apos] = '.'; } ainfo->cs[aseqlen] = '\0'; ainfo->flags |= AINFO_CS; /* Construct individual secondary structure strings by de-aligning * the individuals. */ for (idx = 0; idx < nseq; idx++) { MakeDealignedString(aseqs[idx], aseqlen, ss[idx], &(ainfo->sqinfo[idx].ss)); ainfo->sqinfo[idx].flags |= SQINFO_SS; } } Free2DArray(ss, nseq); *ret_aseqs = aseqs; return 1; } tRNAscan-SE-2.0/src/model.c0000644000543100007160000005126511021467304014674 0ustar pchanlowelab/* model.c * Allocation, initialization, free'ing of models. * * Includes code supporting both original node-based CM structure, as well * as the modified, state-based CM structure used by the newer alignment * implementations. * * SRE, Tue Sep 7 09:22:03 1993 * */ #include #include #include "structs.h" #include "funcs.h" #ifdef MEMDEBUG #include "dbmalloc.h" #endif static void fill_state(struct istate_s *st, int nodeidx, int statetype, int offset); static void copy_singlet_emissions(struct istate_s *st, double *emvec, double *rfreq); static void copy_pairwise_emissions(struct istate_s *st, double *em, double *rfreq); static void copy_state_transitions(struct istate_s *st, double *tvec, int tflags); static void copy_pstate_transitions(struct pstate_s *st, double *tvec, int tflags); static void fill_pstate(struct pstate_s *st, int nodeidx, int statetype, int offset); /* Function: AllocCM() * * Purpose: Allocate for a model containing some number of nodes, * inclusive of root but exclusive of ENDs. Blank the model. * * Args: nodes - number of nodes to allocate for * * Return: pointer to the new model. Caller must free, with FreeCM() */ struct cm_s * AllocCM(int nodes) { struct cm_s *cm; int k; if ((cm = (struct cm_s *) malloc (sizeof(struct cm_s))) == NULL) Die("malloc failed"); cm->nodes = nodes; if ((cm->nd = (struct node_s *) malloc (nodes * sizeof(struct node_s))) == NULL) Die("malloc failed"); /* fast way to wipe everything to zero */ memset(cm->nd, 0, (nodes * sizeof(struct node_s))); /* set all the topology connections to -1 */ for (k = 0; k < nodes; k++) cm->nd[k].nxt = cm->nd[k].nxt2 = -1; return cm; } /* Function: FreeCM() * * Purpose: Free memory allocated to a covariance model. * * Return: (void) */ void FreeCM(struct cm_s *cm) { free(cm->nd); free(cm); } /* Function: NormalizeCM() * * Purpose: Normalize all the probability distributions in a model. * Only normalizes the meaningful ones: i.e., matr_emit * emission statistics are ignored for MATL_NODEs, etc. * * Return: (void) */ void NormalizeCM(struct cm_s *cm) { int k; /* counter over nodes */ int fy; /* from statetype, to statetype */ for (k = 0; k < cm->nodes; k++) { for (fy = 0; fy < STATETYPES; fy++) DNorm(cm->nd[k].tmx[fy], STATETYPES); /* state transitions */ DNorm((double *) cm->nd[k].mp_emit, ALPHASIZE * ALPHASIZE); /* MATP emissions */ DNorm(cm->nd[k].ml_emit, ALPHASIZE); /* MATL emissions */ DNorm(cm->nd[k].mr_emit, ALPHASIZE); /* MATR emissions */ DNorm(cm->nd[k].il_emit, ALPHASIZE); /* INSL emissions */ DNorm(cm->nd[k].ir_emit, ALPHASIZE); /* INSR emissions */ } } /* Function: VerifyCM() * * Purpose: Have a look at a CM and make sure nothing stupid * is wrong with it. Returns 0 if something's wrong * and writes diagnostics to stderr. Returns 1 if * everything looks OK. */ int VerifyCM(struct cm_s *cm) { int status = 1; int k; /* counter over nodes */ for (k = 0; k < cm->nodes; k++) { if (cm->nd[k].type < 0 || cm->nd[k].type >= NODETYPES) { status = 0; fprintf(stderr, "Node %d has invalid type %d\n", k, cm->nd[k].type); } if ((cm->nd[k].nxt <= k && cm->nd[k].nxt != -1) || (cm->nd[k].nxt >= cm->nodes)) { status = 0; fprintf(stderr, "Node %d points to invalid left child %d\n", k, cm->nd[k].nxt); } if ((cm->nd[k].nxt2 <= k && cm->nd[k].nxt2 != -1) || (cm->nd[k].nxt2 >= cm->nodes)) { status = 0; fprintf(stderr, "Node %d points to invalid right child %d\n", k, cm->nd[k].nxt2); } } return status; } /* Function: RearrangeCM() * * Purpose: Convert a cm into an "integer cm", a specialized structure * used only in the alignment algorithms. * * The integer CM is an array of istate_s structures; i.e., rather * than a node-oriented form, a state-oriented form. Rearrange * transition tables to optimize the recursion in recurse_mx(). * * The node is expanded into states in proper order (uDEL_ST, * uMATP_ST, uMATL_ST, uMATR_ST, uINSL_ST, uINSR_ST). However, the * state transition vectors are rearranged such that INSL, INSR * are the first elements. * * Insert states are explicitly assumed to have a zero emission * score! * * Args: cm - a covariance model, probability form * rfreq - frequencies to use as a random model (expected background) * ret_icm - RETURN: array of istate_s structures for states * in model. Contains a state 0 for the root; * does not contain anything for the end * ret_statenum - number of states in ret_icm, 0..statenum-1 * * Return: 1 on success, 0 on failure. * ret_icm is malloc'ed here and must be free'ed by caller; * use free(*ret_icm). */ int RearrangeCM(struct cm_s *cm, double *rfreq, struct istate_s **ret_icm, int *ret_statenum) { struct istate_s *icm; /* new int-lod states-based model */ struct istate_s *smallicm; /* streamlined (realloc'ed) icm */ struct m2ali_s *bifstack; /* pda for deferring bifurc connection assignment */ int bifidx; /* state index of a BEGINR's parent bifurc */ int k; /* counter for nodes */ int y; /* counter for states */ int tflags; /* flags for which to state transitions are used */ int fflags; /* flags for which from state transitions are used */ int offset; /* offset to next connected state */ /* We know we can fit the new model into cm->nodes * STATETYPES * states. We'll give back the excess memory later. */ if ((icm = (struct istate_s *) calloc ((cm->nodes * STATETYPES), sizeof(struct istate_s))) == NULL) return 0; bifstack = Init_m2ali(); y = 0; for (k = 0; k < cm->nodes; k++) { /* figure out what we're connected to */ if (cm->nd[k].nxt == -1) tflags = uEND_ST; else { switch (cm->nd[cm->nd[k].nxt].type) { case BIFURC_NODE: tflags = uBIFURC_ST; break; case MATP_NODE: tflags = uDEL_ST | uMATP_ST | uMATR_ST | uMATL_ST; break; case MATL_NODE: tflags = uDEL_ST | uMATL_ST; break; case MATR_NODE: tflags = uDEL_ST | uMATR_ST; break; case BEGINL_NODE: case BEGINR_NODE: tflags = uBEGIN_ST; break; default: Die("no such node type %d", cm->nd[cm->nd[k].nxt].type); } } /* figure out what we're coming from */ switch (cm->nd[k].type) { case BIFURC_NODE: fflags = uBIFURC_ST; offset = 1; break; case MATP_NODE: fflags = uDEL_ST | uMATP_ST | uMATL_ST | uMATR_ST | uINSL_ST | uINSR_ST; tflags |= uINSL_ST | uINSR_ST; offset = 4; break; case MATL_NODE: fflags = uDEL_ST | uMATL_ST | uINSL_ST; tflags |= uINSL_ST; offset = 2; break; case MATR_NODE: fflags = uDEL_ST | uMATR_ST | uINSR_ST; tflags |= uINSR_ST; offset = 2; break; case BEGINL_NODE: fflags = uBEGIN_ST; offset = 1; break; case BEGINR_NODE: fflags = uBEGIN_ST | uINSL_ST; offset = 1; tflags |= uINSL_ST; break; case ROOT_NODE: fflags = uBEGIN_ST | uINSL_ST | uINSR_ST; offset = 1; tflags |= uINSL_ST | uINSR_ST; break; default: Die("No such node type %d\n", cm->nd[k].type); } if (fflags & uDEL_ST) { fill_state(&icm[y], k, uDEL_ST, offset); copy_state_transitions(&icm[y], cm->nd[k].tmx[DEL_ST], tflags); offset--; y++; } else if (fflags & uBIFURC_ST) { fill_state(&icm[y], k, uBIFURC_ST, offset); /* A hack. tmx[0] gets the state index of the left connected BEGIN * child; tmx[1] gets the right connected BEGIN child. The left * child is guaranteed to be the next state, but the assignment * of the right state must be deferred: we push the bifurc state index * into a pda */ icm[y].tmx[0] = y+1; Push_m2ali(bifstack, y, 0, NULL); y++; } else if (fflags & uBEGIN_ST) { fill_state(&icm[y], k, uBEGIN_ST, offset); copy_state_transitions(&icm[y], cm->nd[k].tmx[DEL_ST], tflags); /* continuation of the above commentary. If we're a right BEGIN_ST, * then we pop the state index of our parent bifurc off the pda */ if (cm->nd[k].type == BEGINR_NODE) { Pop_m2ali(bifstack, &bifidx, (int *) NULL, (struct align_s **) NULL); icm[bifidx].tmx[1] = y; } offset--; y++; } if (fflags & uMATP_ST) { fill_state(&icm[y], k, uMATP_ST, offset); copy_pairwise_emissions(&icm[y], (double *) cm->nd[k].mp_emit, rfreq); copy_state_transitions(&icm[y], cm->nd[k].tmx[MATP_ST], tflags); offset--; y++; } if (fflags & uMATL_ST) { fill_state(&icm[y], k, uMATL_ST, offset); copy_singlet_emissions(&icm[y], cm->nd[k].ml_emit, rfreq); copy_state_transitions(&icm[y], cm->nd[k].tmx[MATL_ST], tflags); offset--; y++; } if (fflags & uMATR_ST) { fill_state(&icm[y], k, uMATR_ST, offset); copy_singlet_emissions(&icm[y], cm->nd[k].mr_emit, rfreq); copy_state_transitions(&icm[y], cm->nd[k].tmx[MATR_ST], tflags); offset--; y++; } if (fflags & uINSL_ST) { fill_state(&icm[y], k, uINSL_ST, 0); copy_singlet_emissions(&icm[y], cm->nd[k].il_emit, rfreq); copy_state_transitions(&icm[y], cm->nd[k].tmx[INSL_ST], tflags); y++; } if (fflags & uINSR_ST) { /* beware an asymmetry: INSR->INSL transits are disallowed */ fill_state(&icm[y], k, uINSR_ST, 0); copy_singlet_emissions(&icm[y], cm->nd[k].ir_emit, rfreq); copy_state_transitions(&icm[y], cm->nd[k].tmx[INSR_ST], tflags & ~uINSL_ST); y++; } /* End states must be added */ if (cm->nd[k].nxt == -1) { fill_state(&icm[y], -1, uEND_ST, 0); y++; } } /* end loop over nodes */ Free_m2ali(bifstack); /* Return some of the alloc'ed memory */ smallicm = (struct istate_s *) realloc (icm, y * sizeof(struct istate_s)); *ret_icm = (smallicm != NULL) ? smallicm : icm; *ret_statenum = y; return 1; } /* Function: fill_state() * * Purpose: fill in values in a state: node index, state type unique * identifier, offset to first of the next states, and number * of ynext connections. * * transition and emission probabilities are dealt with * elsewhere. * */ static void fill_state(struct istate_s *st, int nodeidx, int statetype, int offset) { st->nodeidx = nodeidx; st->statetype = statetype; st->offset = offset; } /* Function: copy_singlet_emissions() * * Purpose: Copy a singlet emission vector into a state structure, * converting the probabilities into integer log odds. */ static void copy_singlet_emissions(struct istate_s *st, double *emvec, double *rfreq) { int x; for (x = 0; x < ALPHASIZE; x++) st->emit[x] = ILOG2(emvec[x] / rfreq[x]); } /* Function: copy_pairwise_emissions() * * Purpose: Copy a pairwise emission table into a state structure, * converting the probabilities into integer log odds. * Beware the funny business with the pairwise emission * array; it was mp_emit[4][4], now cast to a pointer, * and accessed like a vector. */ static void copy_pairwise_emissions(struct istate_s *st, double *em, double *rfreq) { int x; for (x = 0; x < ALPHASIZE * ALPHASIZE; x++) st->emit[x] = ILOG2(em[x] / (rfreq[x % ALPHASIZE] * rfreq[x / ALPHASIZE])); } /* Function: copy_state_transitions() * * Purpose: Copy a state transition vector from a CM into a state * structure, copying only the used state transitions * as given by tflags. The state transition vector is * rearranged for an optimization: transits to INSL, INSR * are placed first. */ static void copy_state_transitions(struct istate_s *st, double *tvec, int tflags) { int stx; /* counter for state vector */ stx = 0; if (tflags & uINSL_ST) { st->tmx[stx] = ILOG2(tvec[INSL_ST]); stx++; } if (tflags & uINSR_ST) { st->tmx[stx] = ILOG2(tvec[INSR_ST]); stx++; } if (tflags & uDEL_ST || tflags & uBIFURC_ST || tflags & uBEGIN_ST || tflags & uEND_ST) { st->tmx[stx] = ILOG2(tvec[DEL_ST]); stx++; } if (tflags & uMATP_ST) { st->tmx[stx] = ILOG2(tvec[MATP_ST]); stx++; } if (tflags & uMATL_ST) { st->tmx[stx] = ILOG2(tvec[MATL_ST]); stx++; } if (tflags & uMATR_ST) { st->tmx[stx] = ILOG2(tvec[MATR_ST]); stx++; } st->connectnum = stx; } /* Function: MakePCM() * * Purpose: Like RearrangeCM(), but leaving the model * in floating-point probabilities in struct pstate_s * structures. * * Args: cm - a covariance model, probability form * ret_pcm - RETURN: array of pstate_s structures for states * in model. Contains a state 0 for the root. * end states are explicit. * ret_statenum - number of states in ret_pcm, 0..statenum-1 * * Return: 1 on success, 0 on failure. * ret_pcm is malloc'ed here and must be free'ed by caller; * use free(*ret_pcm). */ int MakePCM(struct cm_s *cm, struct pstate_s **ret_pcm, int *ret_statenum) { struct pstate_s *pcm; /* new states-based model */ struct pstate_s *smallpcm; /* streamlined (realloc'ed) pcm */ struct intstack_s *bifstack; /* pda for deferring bifurc connection assignment */ int bifidx; /* state index of a BEGINR's parent bifurc */ int k; /* counter for nodes */ int y; /* counter for states */ int tflags; /* flags for which to state transitions are used */ int fflags; /* flags for which from state transitions are used */ int offset; /* offset to next connected state */ /* We know we can fit the new model into cm->nodes * STATETYPES * states. We'll give back the excess memory later. */ if ((pcm = (struct pstate_s *) calloc ((cm->nodes * STATETYPES), sizeof(struct pstate_s))) == NULL) return 0; bifstack = InitIntStack(); y = 0; for (k = 0; k < cm->nodes; k++) { /* figure out what we're connected to */ if (cm->nd[k].nxt == -1) tflags = uEND_ST; else { switch (cm->nd[cm->nd[k].nxt].type) { case BIFURC_NODE: tflags = uBIFURC_ST; break; case MATP_NODE: tflags = uDEL_ST | uMATP_ST | uMATR_ST | uMATL_ST; break; case MATL_NODE: tflags = uDEL_ST | uMATL_ST; break; case MATR_NODE: tflags = uDEL_ST | uMATR_ST; break; case BEGINL_NODE: tflags = uBEGIN_ST; break; case BEGINR_NODE: tflags = uBEGIN_ST; break; default: Die("no such node type %d", cm->nd[cm->nd[k].nxt].type); } } /* figure out what we're coming from */ switch (cm->nd[k].type) { case BIFURC_NODE: fflags = uBIFURC_ST; offset = 1; break; case MATP_NODE: fflags = uDEL_ST | uMATP_ST | uMATL_ST | uMATR_ST | uINSL_ST | uINSR_ST; tflags |= uINSL_ST | uINSR_ST; offset = 4; break; case MATL_NODE: fflags = uDEL_ST | uMATL_ST | uINSL_ST; tflags |= uINSL_ST; offset = 2; break; case MATR_NODE: fflags = uDEL_ST | uMATR_ST | uINSR_ST; tflags |= uINSR_ST; offset = 2; break; case BEGINL_NODE: fflags = uBEGIN_ST; offset = 1; break; case BEGINR_NODE: fflags = uBEGIN_ST | uINSL_ST; offset = 1; tflags |= uINSL_ST; break; case ROOT_NODE: fflags = uBEGIN_ST | uINSL_ST | uINSR_ST; offset = 1; tflags |= uINSL_ST | uINSR_ST; break; default: Die("No such node type %d\n", cm->nd[k].type); } if (fflags & uDEL_ST) { fill_pstate(&pcm[y], k, uDEL_ST, offset); copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[DEL_ST], tflags); offset--; y++; } else if (fflags & uBIFURC_ST) { fill_pstate(&pcm[y], k, uBIFURC_ST, offset); /* We defer the assignment of bifr */ PushIntStack(bifstack, y); y++; } else if (fflags & uBEGIN_ST) { fill_pstate(&pcm[y], k, uBEGIN_ST, offset); copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[DEL_ST], tflags); /* continuation of the above commentary. If we're a right BEGIN_ST, * then we pop the state index of our parent bifurc off the pda */ if (cm->nd[k].type == BEGINR_NODE) { PopIntStack(bifstack, &bifidx); pcm[bifidx].bifr = y; } offset--; y++; } if (fflags & uMATP_ST) { fill_pstate(&pcm[y], k, uMATP_ST, offset); memcpy(pcm[y].emit, cm->nd[k].mp_emit, sizeof(double) * ALPHASIZE * ALPHASIZE); copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[MATP_ST], tflags); offset--; y++; } if (fflags & uMATL_ST) { fill_pstate(&pcm[y], k, uMATL_ST, offset); memcpy(pcm[y].emit, cm->nd[k].ml_emit, sizeof(double) * ALPHASIZE); copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[MATL_ST], tflags); offset--; y++; } if (fflags & uMATR_ST) { fill_pstate(&pcm[y], k, uMATR_ST, offset); memcpy(pcm[y].emit, cm->nd[k].mr_emit, sizeof(double) * ALPHASIZE); copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[MATR_ST], tflags); offset--; y++; } if (fflags & uINSL_ST) { fill_pstate(&pcm[y], k, uINSL_ST, 0); memcpy(pcm[y].emit, cm->nd[k].il_emit, sizeof(double) * ALPHASIZE); copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[INSL_ST], tflags); y++; } if (fflags & uINSR_ST) { /* beware an asymmetry: INSR->INSL transits are disallowed */ fill_pstate(&pcm[y], k, uINSR_ST, 0); memcpy(pcm[y].emit, cm->nd[k].ir_emit, sizeof(double) * ALPHASIZE); copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[INSR_ST], tflags & ~uINSL_ST); y++; } /* End states must be added */ if (cm->nd[k].nxt == -1) { fill_pstate(&pcm[y], -1, uEND_ST, 0); y++; } } /* end loop over nodes */ FreeIntStack(bifstack); /* Return some of the alloc'ed memory */ smallpcm = (struct pstate_s *) realloc (pcm, y * sizeof(struct pstate_s)); *ret_pcm = (smallpcm != NULL) ? smallpcm : pcm; *ret_statenum = y; return 1; } /* Function: copy_pstate_transitions() * * Purpose: Copy a state transition vector from a CM into a state * structure, copying only the used state transitions * as given by tflags. The state transition vector is * rearranged for an optimization: transits to INSL, INSR * are placed first. */ static void copy_pstate_transitions(struct pstate_s *st, double *tvec, int tflags) { int stx; /* counter for state vector */ stx = 0; if (tflags & uINSL_ST) { st->tmx[stx] = tvec[INSL_ST]; stx++; } if (tflags & uINSR_ST) { st->tmx[stx] = tvec[INSR_ST]; stx++; } if (tflags & uDEL_ST || tflags & uBIFURC_ST || tflags & uBEGIN_ST || tflags & uEND_ST) { st->tmx[stx] = tvec[DEL_ST]; stx++; } if (tflags & uMATP_ST) { st->tmx[stx] = tvec[MATP_ST]; stx++; } if (tflags & uMATL_ST) { st->tmx[stx] = tvec[MATL_ST]; stx++; } if (tflags & uMATR_ST) { st->tmx[stx] = tvec[MATR_ST]; stx++; } st->connectnum = stx; } /* Function: fill_pstate() * * Purpose: fill in values in a state: node index, state type unique * identifier, offset to first of the next states. * * transition and emission probabilities are dealt with * elsewhere. * */ static void fill_pstate(struct pstate_s *st, int nodeidx, int statetype, int offset) { st->nodeidx = nodeidx; st->statetype = statetype; st->offset = offset; } /* Function: NormalizePCM() * * Purpose: Make damn sure a probability-form, states-based CM is * properly normalized. Workaround for a bug! */ void NormalizePCM(struct pstate_s *pcm, int M) { int y; for (y = 0; y < M; y++) { /* emission distributions */ switch (pcm[y].statetype) { case uMATP_ST: DNorm(pcm[y].emit, ALPHASIZE * ALPHASIZE); break; case uMATL_ST: case uMATR_ST: case uINSL_ST: case uINSR_ST: DNorm(pcm[y].emit, ALPHASIZE); break; } /* transition distributions */ if (pcm[y].statetype != uBIFURC_ST) DNorm(pcm[y].tmx, pcm[y].connectnum); } } tRNAscan-SE-2.0/src/reformat_main.c0000644000543100007160000001166411021467311016414 0ustar pchanlowelab/* SQUID - A C function library for biological sequence analysis * Copyright (C) 1992-1996 Sean R. Eddy * * This source code is distributed under terms of the * GNU General Public License. See the files COPYING * and GNULICENSE for further details. * */ /* reformat_main.c * Mon Sep 13 13:06:51 1993 * * reformat - reformat sequence files. */ #include #include #include "squid.h" #define OPTIONS "dhlru" char usage[] = "Usage: reformat [-options] \n\ Convert between sequence file formats.\n\ Available formats are:\n\ embl\n\ fasta\n\ xfasta\n\ genbank\n\ gcg\n\ gcgdata\n\ msf\n\ strider\n\ zuker\n\ ig\n\ nbrf\n\ pir\n\ selex\n\ squid\n\ raw\n\n\ Available options are:\n\ -d : force DNA alphabet for nucleic acid sequence\n\ -r : force RNA alphabet for nucleic acid sequence\n\ -l : force lower case\n\ -u : force upper case\n\ -h : print short help and usage info\n"; struct seqfmt_s { char *formatname; int fmt; } seqfmt[] = { { "embl", kEMBL }, { "fasta", kPearson }, { "xfasta", kXPearson}, { "genbank", kGenBank }, { "gcg", kGCG }, { "gcgdata", kGCGdata }, { "msf", kMSF }, { "strider", kStrider }, { "zuker", kZuker }, { "ig", kIG }, { "nbrf", kNBRF }, { "pir", kPIR }, { "selex", kSelex }, { "squid", kSquid }, { "raw", kRaw }, }; #define NUMFORMATS (sizeof(seqfmt) / sizeof(struct seqfmt_s)) int main(int argc, char **argv) { char *seqfile; /* name of sequence file */ char *format; SQFILE *dbfp; /* open sequence file */ int fmt; /* format of seqfile */ int outfmt; /* output format */ char *seq; /* sequence */ SQINFO sqinfo; int i; int force_rna; /* TRUE to force RNA alphabet */ int force_dna; /* TRUE to force DNA alphabet */ int force_lower; /* TRUE to force lower case */ int force_upper; /* TRUE to force upper case */ int optchar; /* option character, command line */ extern int optind; /*********************************************** * Parse command line ***********************************************/ force_rna = FALSE; force_dna = FALSE; force_upper = FALSE; force_lower = FALSE; while ((optchar = getopt(argc, argv, OPTIONS)) != -1) switch (optchar) { case 'd': force_dna = TRUE; break; case 'l': force_lower = TRUE; break; case 'r': force_rna = TRUE; break; case 'u': force_upper = TRUE; break; case 'h': printf("reformat %s, %s\n%s\n", squid_version, squid_date, usage); exit(EXIT_SUCCESS); default: Die("%s\n", usage); } if (argc - optind != 2) Die("%s\n", usage); if (force_lower && force_upper) Die("Can't force both upper case and lower case. Stop trying to confuse me.\n%s", usage); if (force_rna && force_dna) Die("Can't force both RNA and DNA. Stop trying to find bugs, you'll be sorry.\n%s", usage); format = argv[optind]; optind++; seqfile = argv[optind]; optind++; /*********************************************** * Figure out what format we're supposed to write ***********************************************/ outfmt = kUnknown; for (i = 0; i < NUMFORMATS; i++) if (strcasecmp(format, seqfmt[i].formatname) == 0) outfmt = seqfmt[i].fmt; if (outfmt == kUnknown) Die("Unknown output format %s\n%s", format, usage); /*********************************************** * Reformat the file, printing to stdout. ***********************************************/ if (! SeqfileFormat(seqfile, &fmt, NULL)) Die("Can't determine format of file %s\n", seqfile); if ((fmt == kMSF || fmt == kSelex || fmt == kClustal) && (outfmt == kMSF || outfmt == kSelex)) { char **aseqs; int num; AINFO ainfo; ReadAlignment(seqfile, fmt, &aseqs, &num, &ainfo); for (i = 0; i < num; i++) { if (force_dna) ToDNA(aseqs[i]); if (force_rna) ToRNA(aseqs[i]); if (force_lower) s2lower(aseqs[i]); if (force_upper) s2upper(aseqs[i]); } switch (outfmt) { case kMSF: WriteMSF(stdout, aseqs, num, &ainfo); break; case kSelex: WriteSELEX(stdout, aseqs, num, &ainfo, 50); break; } FreeAlignment(aseqs, num, &ainfo); } else if (outfmt == kMSF || outfmt == kSelex) { Die("Sorry, you can't make alignment files from unaligned files"); } else { if ((dbfp = SeqfileOpen(seqfile, fmt, NULL)) == NULL) Die("Failed to open sequence file %s for reading", seqfile); while (ReadSeq(dbfp, fmt, &seq, &sqinfo)) { if (force_dna) ToDNA(seq); if (force_rna) ToRNA(seq); if (force_lower) s2lower(seq); if (force_upper) s2upper(seq); WriteSeq(stdout, outfmt, seq, &sqinfo); FreeSequence(seq, &sqinfo); } SeqfileClose(dbfp); } return 0; } tRNAscan-SE-2.0/src/prior.h0000644000543100007160000004406211021467306014733 0ustar pchanlowelab#ifndef PRIORH_INCLUDED #define PRIORH_INCLUDED /* prior.h -- prior probability distributions, for regularization * SRE, Wed Sep 1 15:47:42 1993 * * There are 24 different node-node transitions; 6 kinds of node * we can come from (BIFURC_NODES are the exception, always with p=1.0 * transitions), and four kinds of node we can go to (MATP, MATL, * MATR, BIFURC; END is treated the same as BIFURC). * * There are 256 different kinds of state transitions, total. * For ease of indexing, we keep them in a [7][4][6][6] sparse * array, indexed [from node][to node][from statetype][to statetype]. * Thus there are 1008 numbers, 752 are 0's. Any given row * tprior[fn][tn][fs] sums to 1.0 * the number of possible * transitions. * * The tables are currently set up to do Laplace corrections; i.e., * a "plus-one" prior. * * Christ. This really _is_ the best way to do it, I think. */ /* DO NOT CHANGE THE ORDER OF THE DEFINITIONS IN THIS FILE. * The prior.h header files are sometimes parsed at run-time, * and they're expected to be in this format. */ #include "structs.h" /* A C G T */ static double def_rfreq[ALPHASIZE] = { 0.25, 0.25, 0.25, 0.25 }; static double def_talpha[STATETYPES] = /* DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }; static double def_emalpha[STATETYPES] = /* DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }; static double def_matp_prior[ALPHASIZE][ALPHASIZE] = { { 1.00, 1.00, 1.00, 1.00 }, { 1.00, 1.00, 1.00, 1.00 }, { 1.00, 1.00, 1.00, 1.00 }, { 1.00, 1.00, 1.00, 1.00 }, }; /* A C G T */ static double def_matl_prior[ALPHASIZE] = { 1.00, 1.00, 1.00, 1.00 }; static double def_matr_prior[ALPHASIZE] = { 1.00, 1.00, 1.00, 1.00 }; static double def_insl_prior[ALPHASIZE] = { 1.00, 1.00, 1.00, 1.00 }; static double def_insr_prior[ALPHASIZE] = { 1.00, 1.00, 1.00, 1.00 }; static double def_tprior[7][4][STATETYPES][STATETYPES] = { { /* BIFURC_NODE --> BIFURC_NODE or END: never happens */ /* fs: */ /* ts: BIFURC_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BIFURC_NODE --> MATP_NODE: never happens. */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BIFURC_NODE --> MATL_NODE: never happens. */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BIFURC_NODE --> MATR_NODE: never happens */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, }, { /* MATP_NODE --> BIFURC_NODE or END */ /* fs: */ /* ts: BIFURC_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 0.00, 1.00, 1.00 }, /* MATP_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 1.00 }, /* MATL_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 1.00 }, /* MATR_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 1.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 0.00, 0.00, 0.00, 0.00, 1.00 }, }, /* MATP_NODE --> MATP_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* MATP_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* MATL_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* MATR_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* INSL_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 1.00, 1.00, 1.00, 0.00, 1.00 }, }, /* MATP_NODE --> MATL_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 1.00, 0.00, 1.00, 1.00 }, /* MATP_ST */ { 1.00, 0.00, 1.00, 0.00, 1.00, 1.00 }, /* MATL_ST */ { 1.00, 0.00, 1.00, 0.00, 1.00, 1.00 }, /* MATR_ST */ { 1.00, 0.00, 1.00, 0.00, 1.00, 1.00 }, /* INSL_ST */ { 1.00, 0.00, 1.00, 0.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 0.00, 1.00, 0.00, 0.00, 1.00 }, }, /* MATP_NODE --> MATR_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 1.00, 1.00, 1.00 }, /* MATP_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 1.00 }, /* MATL_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 1.00 }, /* MATR_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 1.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 0.00, 0.00, 1.00, 0.00, 1.00 }, }, }, { /* MATL_NODE --> BIFURC_NODE or END */ /* fs: */ /* ts: BIFURC_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 0.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* MATL_NODE --> MATP_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 1.00, 1.00, 1.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* MATL_NODE --> MATL_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 1.00, 0.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 1.00, 0.00, 1.00, 0.00, 1.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 1.00, 0.00, 1.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* MATL_NODE --> MATR_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 1.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, }, { /* MATR_NODE --> BIFURC_NODE or END */ /* fs: */ /* ts: BIFURC_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 0.00, 0.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 1.00, 0.00, 0.00, 0.00, 0.00, 1.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 1.00, 0.00, 0.00, 0.00, 0.00, 1.00 }, }, /* MATR_NODE --> MATP_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 1.00, 1.00, 1.00, 0.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 1.00, 1.00, 1.00, 1.00, 0.00, 1.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 1.00, 1.00, 1.00, 1.00, 0.00, 1.00 }, }, /* MATR_NODE --> MATL_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 1.00, 0.00, 0.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 1.00, 0.00, 1.00, 0.00, 0.00, 1.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 1.00, 0.00, 1.00, 0.00, 0.00, 1.00 }, }, /* MATR_NODE --> MATR_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 1.00, 0.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 1.00, 0.00, 0.00, 1.00, 0.00, 1.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 1.00, 0.00, 0.00, 1.00, 0.00, 1.00 }, }, }, { /* BEGINL_NODE --> BIFURC_NODE or END */ /* fs: */ /* ts: BIFURC_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BEGINL_NODE --> MATP_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 1.00, 1.00, 1.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BEGINL_NODE --> MATL_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 0.00, 1.00, 0.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BEGINL_NODE --> MATR_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 0.00, 0.00, 1.00, 0.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, }, { /* BEGINR_NODE --> BIFURC_NODE or END */ /* fs: */ /* ts: BIFURC_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 0.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BEGINR_NODE --> MATP_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 1.00, 1.00, 1.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BEGINR_NODE --> MATL_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 1.00, 0.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, /* BEGINR_NODE --> MATR_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* DEL_ST */ { { 1.00, 0.00, 0.00, 1.00, 1.00, 0.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 0.00 }, /* INSR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, }, }, { /* ROOT_NODE --> BIFURC_NODE or END */ /* fs: */ /* ts: BIFURC_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 0.00, 0.00, 0.00, 1.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 0.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 0.00, 0.00, 0.00, 0.00, 1.00 }, }, /* ROOT_NODE --> MATP_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 1.00, 1.00, 1.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 1.00, 1.00, 1.00, 0.00, 1.00 }, }, /* ROOT_NODE --> MATL_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 0.00, 1.00, 0.00, 1.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 1.00, 0.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 0.00, 1.00, 0.00, 0.00, 1.00 }, }, /* ROOT_NODE --> MATR_NODE */ /* fs: */ /* ts: DEL_ST MATP_ST MATL_ST MATR_ST INSL_ST INSR_ST */ /* BEGIN */ { { 1.00, 0.00, 0.00, 1.00, 1.00, 1.00 }, /* MATP_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATL_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* MATR_ST */ { 0.00, 0.00, 0.00, 0.00, 0.00, 0.00 }, /* INSL_ST */ { 1.00, 0.00, 0.00, 1.00, 1.00, 1.00 }, /* INSR_ST */ { 1.00, 0.00, 0.00, 1.00, 0.00, 1.00 }, }, }, }; #endif /* PRIORH_INCLUDED */ tRNAscan-SE-2.0/EukHighConfidenceFilter.in0000644000543100007160000006723613276407662017665 0ustar pchanlowelab#! @PERL@ -w # # -------------------------------------------------------------------- # EukHighConfidenceFilter v1.0 # # Annotate eukaryotic tRNA high confidence set from tRNAscan-SE 2.0 predictions # # Copyright (C) 2017 Patricia Chan and Todd Lowe # # Baskin School of Engineering, University of California, Santa Cruz # lowe@soe.ucsc.edu # http://lowelab.ucsc.edu/ # -------------------------------------------------------------------- use strict; use lib "@libdir@/tRNAscan-SE"; use Getopt::Long; use tRNAscanSE::tRNA; use tRNAscanSE::ArraytRNA; our @isotypes = ('Ala', 'Gly', 'Pro', 'Thr', 'Val', 'Ser', 'Arg', 'Leu', 'Phe','Asn', 'Lys', 'Asp', 'Glu', 'His', 'Gln', 'Ile', 'Met', 'Tyr', 'Sup', 'Cys', 'Trp', 'SeC'); our %ac_list = ( 'Ala' => [qw/AGC GGC CGC TGC/], 'Gly' => [qw/ACC GCC CCC TCC/], 'Pro' => [qw/AGG GGG CGG TGG/], 'Thr' => [qw/AGT GGT CGT TGT/], 'Val' => [qw/AAC GAC CAC TAC/], 'Ser' => [qw/AGA GGA CGA TGA ACT GCT    /], 'Arg' => [qw/ACG GCG CCG TCG     CCT TCT/], 'Leu' => [qw/AAG GAG CAG TAG     CAA TAA/], 'Phe' => [qw/AAA GAA    /], 'Asn' => [qw/ATT GTT    /], 'Lys' => [qw/    CTT TTT/], 'Asp' => [qw/ATC GTC     /], 'Glu' => [qw/    CTC TTC/], 'His' => [qw/ATG GTG     /], 'Gln' => [qw/    CTG TTG/], 'Tyr' => [qw/ATA GTA     /], 'Sup' => [qw/    CTA TTA/], 'Ile' => [qw/AAT GAT   TAT/], 'Met' => [qw/    CAT  /], 'Cys' => [qw/ACA GCA     /], 'Trp' => [qw/    CCA  /], 'SeC' => [qw/      TCA/] ); our %aa_list = ( 'AGC'=>'Ala', 'GGC'=>'Ala', 'CGC'=>'Ala', 'TGC'=>'Ala', 'ACC'=>'Gly', 'GCC'=>'Gly', 'CCC'=>'Gly', 'TCC'=>'Gly', 'AGG'=>'Pro', 'GGG'=>'Pro', 'CGG'=>'Pro', 'TGG'=>'Pro', 'AGT'=>'Thr', 'GGT'=>'Thr', 'CGT'=>'Thr', 'TGT'=>'Thr', 'AAC'=>'Val', 'GAC'=>'Val', 'CAC'=>'Val', 'TAC'=>'Val', 'AGA'=>'Ser', 'GGA'=>'Ser', 'CGA'=>'Ser', 'TGA'=>'Ser', 'ACT'=>'Ser', 'GCT'=>'Ser', 'ACG'=>'Arg', 'GCG'=>'Arg', 'CCG'=>'Arg', 'TCG'=>'Arg', 'CCT'=>'Arg', 'TCT'=>'Arg', 'AAG'=>'Leu', 'GAG'=>'Leu', 'CAG'=>'Leu', 'TAG'=>'Leu', 'CAA'=>'Leu', 'TAA'=>'Leu', 'AAA'=>'Phe', 'GAA'=>'Phe', 'ATT'=>'Asn', 'GTT'=>'Asn', 'CTT'=>'Lys', 'TTT'=>'Lys', 'ATC'=>'Asp', 'GTC'=>'Asp', 'CTC'=>'Glu', 'TTC'=>'Glu', 'ATG'=>'His', 'GTG'=>'His', 'CTG'=>'Gln', 'TTG'=>'Gln', 'ATA'=>'Tyr', 'GTA'=>'Tyr', 'CTA'=>'Sup', 'TTA'=>'Sup', 'AAT'=>'Ile', 'GAT'=>'Ile', 'TAT'=>'Ile', 'CAT'=>'Met', 'ACA'=>'Cys', 'GCA'=>'Cys', 'CCA'=>'Trp', 'TCA'=>'SeC', ); our %euk_aa_list = ( 'AGC'=>'Ala', 'CGC'=>'Ala', 'TGC'=>'Ala', 'GCC'=>'Gly', 'CCC'=>'Gly', 'TCC'=>'Gly', 'AGG'=>'Pro', 'CGG'=>'Pro', 'TGG'=>'Pro', 'AGT'=>'Thr', 'CGT'=>'Thr', 'TGT'=>'Thr', 'AAC'=>'Val', 'CAC'=>'Val', 'TAC'=>'Val', 'AGA'=>'Ser', 'CGA'=>'Ser', 'TGA'=>'Ser', 'GCT'=>'Ser', 'ACG'=>'Arg', 'CCG'=>'Arg', 'TCG'=>'Arg', 'CCT'=>'Arg', 'TCT'=>'Arg', 'AAG'=>'Leu', 'CAG'=>'Leu', 'TAG'=>'Leu', 'CAA'=>'Leu', 'TAA'=>'Leu', 'GAA'=>'Phe', 'GTT'=>'Asn', 'CTT'=>'Lys', 'TTT'=>'Lys', 'GTC'=>'Asp', 'CTC'=>'Glu', 'TTC'=>'Glu', 'GTG'=>'His', 'CTG'=>'Gln', 'TTG'=>'Gln', 'GTA'=>'Tyr', 'CTA'=>'Sup', 'TTA'=>'Sup', 'AAT'=>'Ile', 'GAT'=>'Ile', 'TAT'=>'Ile', 'CAT'=>'Met', 'GCA'=>'Cys', 'CCA'=>'Trp', 'TCA'=>'SeC', ); our ($opt_result, $opt_ss, $opt_output, $opt_prefix, $opt_remove, $opt_cmscore1, $opt_ssscore1, $opt_isoscore1, $opt_isoscore2, $opt_isomaxscore2, $opt_help); our $ANTICODON_COUNT_CUTOFF = 40; our %file_names = (); our $tRNAs = tRNAscanSE::ArraytRNA->new(); our %tRNA_counts = (); &set_options(); &set_file_names(); my ($sec_pass_filtered_ac, $iso_score_cutoff, $ac_count) = &filtering(); &print_results($sec_pass_filtered_ac, $iso_score_cutoff, $ac_count); exit; sub set_options { $opt_result = ""; $opt_ss = ""; $opt_output = ""; $opt_prefix = ""; $opt_remove = 0; $opt_cmscore1 = 50; $opt_ssscore1 = 10; $opt_isoscore1 = 70; $opt_isoscore2 = 70; $opt_isomaxscore2 = 95; Getopt::Long::GetOptions("result|i=s", "ss|s=s", "output|o=s", "prefix|p=s", "remove|r", "cmscore1|c1=f", "ssscore1|m1=f", "isoscore1|e1=f", "isoscore2|e2=f", "isomaxscore2|x=f", "help|h"); if ($opt_help || $opt_result eq "" || $opt_ss eq "" || $opt_output eq "" || $opt_prefix eq "" || $opt_cmscore1 < -1 || $opt_ssscore1 < -1 || $opt_isoscore1 < -1 || $opt_isoscore2 < -1 || $opt_isomaxscore2 < -1) { die "Usage: EukQualityFilter [options]\n", "Options\n", "--result -i tRNAscan-SE output file used as input\n", "--ss -s tRNAscan-SE secondary structure file used as input\n", "--output -o Directory where output files will be written\n", "--prefix -p Prefix for output file name\n", "--remove -r Remove filtered tRNA hits (default: filtered tRNA hits are only tagged)\n", "--cmscore1 -c1 Domain-specific model score cutoff for secondary filtering (default = 50; -1 if not used for filtering)\n", "--ssscore1 -m1 Secondary structure score cutoff for secondary filtering (default = 10; -1 if not used for filtering)\n", "--isoscore1 -e1 Isotype-specific model score cutoff for secondary filtering (default = 70; -1 if not used for filtering)\n", "--isoscore2 -e2 Isotype-specific model starting score cutoff for tertiary filtering (default = 70; -1 if not used for filtering)\n", "--isomaxscore2 -x Maximum isotype-specific model score cutoff for tertiary filtering (default = 95)\n", "--help -h Print this help\n\n"; } } sub set_file_names { system("mkdir -p ".$opt_output); $file_names{tRNAscan_out} = $opt_result; $file_names{tRNAscan_ss} = $opt_ss; $file_names{output_tRNAscan_out} = $opt_output."/".$opt_prefix.".out"; $file_names{output_tRNAscan_ss} = $opt_output."/".$opt_prefix.".ss"; $file_names{log} = $opt_output."/".$opt_prefix.".log"; } sub filtering { my $sec_pass_filtered_ac = {}; my $iso_score_cutoff = {}; &pseudogene_filter(); &secondary_filter(); if ($opt_isoscore2 != -1) { ($sec_pass_filtered_ac, $iso_score_cutoff) = &tertiary_filter(); } $tRNAs->sort_array("tRNAscan_id"); my $ac_count = &get_ac_count(); return ($sec_pass_filtered_ac, $iso_score_cutoff, $ac_count); } sub print_results { my ($sec_pass_filtered_ac, $iso_score_cutoff, $ac_count) = @_; &write_out_file($ac_count); &write_ss_file(); &write_summary($sec_pass_filtered_ac, $iso_score_cutoff); } sub pseudogene_filter { my $line = ""; my $tRNA = undef; my %header = (); my ($startpos, $endpos); my @columns = (); my $ct = 0; $tRNA_counts{total} = 0; $tRNA_counts{pseudo_filter} = 0; print "Status: Filtering pseudogenes\n"; open(FILE_IN, "$file_names{tRNAscan_out}") or die "Fail to open $file_names{tRNAscan_out}\n"; while ($line = ) { $ct++; print STDERR "." if ($ct % 1000 == 0); print STDERR "\n" if ($ct % 50000 == 0); chomp($line); if ($line =~ /^Name/) { $line =~ s/tRNA #/tRNA#/; } if ($line =~ /^Sequence/) { $line =~ s/Intron Bounds/Intron\tBound/; } @columns = split(/\t/, $line, -1); for (my $i = 0; $i < scalar(@columns); $i++) { $columns[$i] = &trim($columns[$i]); } if ($columns[0] =~ /^Sequence/ || $columns[0] =~ /^Name/ || $columns[0] =~ /^-----/) { if ($columns[0] =~ /^Sequence/) { for (my $i = 0; $i < scalar(@columns); $i++) { if ($columns[$i] eq "Sequence") { $header{seqname} = $i; } elsif ($columns[$i] eq "Anti") { $header{anticodon} = $i; } elsif ($columns[$i] eq "Intron") { $header{intron_start} = $i; $header{intron_end} = $i+1; } elsif ($columns[$i] eq "Inf") { $header{score} = $i; } elsif ($columns[$i] eq "Cove") { $header{score} = $i; } elsif ($columns[$i] eq "HMM") { $header{hmm_score} = $i; } elsif ($columns[$i] eq "2'Str") { $header{ss_score} = $i; } elsif ($columns[$i] eq "Hit") { $header{hit_origin} = $i; } elsif ($columns[$i] eq "HMM") { $header{hmm_score} = $i; } elsif ($columns[$i] eq "Type") { $header{isotype_type} = $i; } } } elsif ($columns[0] =~ /^Name/) { for (my $i = 0; $i < scalar(@columns); $i++) { if ($columns[$i] eq "tRNA#") { $header{trna_id} = $i; } elsif ($columns[$i] eq "Begin" and !defined $header{start}) { $header{start} = $i; $header{end} = $i+1; } elsif ($columns[$i] eq "Type") { $header{isotype} = $i; } elsif ($columns[$i] eq "CM") { $header{isotype_cm} = $i; $header{isotype_score} = $i+1; } elsif ($columns[$i] eq "Note") { $header{note} = $i; } elsif ($columns[$i] eq "Count") { $header{intron_count} = $i; } } } } else { if (!defined $header{isotype_cm}) { die "Error: This filter requires isotype-specific model scan result in the tRNAscan-SE v2 output file.\n"; } if (!defined $header{note}) { die "Error: This filter requires tRNAscan-SE v2 output file.\n"; } $tRNA_counts{total}++; if ($columns[$header{seqname}] eq "chrM" or $columns[$header{seqname}] eq "M" or $columns[$header{seqname}] eq "chrMT" or $columns[$header{seqname}] eq "MT") { $tRNA_counts{total}--; next; } elsif ($columns[$header{note}] =~ /pseudo/) { $tRNA_counts{pseudo_filter}++; next; } else { $tRNA = tRNAscanSE::tRNA->new; $tRNA->seqname($columns[$header{seqname}]); $tRNA->tRNAscan_id($columns[$header{seqname}].".trna".$columns[$header{trna_id}]); $startpos = $columns[$header{start}]; $endpos = $columns[$header{end}]; if ($startpos < $endpos) { $tRNA->start($startpos); $tRNA->end($endpos); $tRNA->strand("+"); } else { $tRNA->end($startpos); $tRNA->start($endpos); $tRNA->strand("-"); } $tRNA->category("cyto"); $tRNA->isotype($columns[$header{isotype}]); $tRNA->anticodon($columns[$header{anticodon}]); $tRNA->score($columns[$header{score}]); $tRNA->hmm_score($columns[$header{hmm_score}]); $tRNA->ss_score($columns[$header{ss_score}]); $tRNA->tRNAscan_id($tRNA->tRNAscan_id()."-".$tRNA->isotype().$tRNA->anticodon()); my $isotype_type = "cytosolic"; if (defined $header{isotype_type}) { $isotype_type = $columns[$header{isotype_type}]; } $tRNA->add_model_hit($isotype_type, $columns[$header{isotype_cm}], $columns[$header{isotype_score}], ""); $tRNAs->put($tRNA); } } } close(FILE_IN); print STDERR "\n"; } sub euk_anticodon_filter { my ($ac_count, $tRNA) = @_; my $tag = ""; if (!$tRNA->is_pseudo()) { if ($tRNA->isotype() eq "Sup") { $tag = "unexpected anticodon"; $tRNA_counts{ac_filter}++; } elsif (!defined $euk_aa_list{$tRNA->anticodon()}) { my $alt_anticodon = $tRNA->anticodon(); if (substr($tRNA->anticodon(), 0, 1) eq "A") { $alt_anticodon = "G".substr($tRNA->anticodon(), 1); } elsif (substr($tRNA->anticodon(), 0, 1) eq "G") { $alt_anticodon = "A".substr($tRNA->anticodon(), 1); } if (defined $aa_list{$tRNA->anticodon()} and defined $aa_list{$alt_anticodon} and defined $euk_aa_list{$alt_anticodon} and $ac_count->{$tRNA->anticodon()} > $ac_count->{$alt_anticodon}) {} else { $tag = "unexpected anticodon"; $tRNA_counts{ac_filter}++; } } } return $tag; } sub secondary_filter { print "Status: Secondary filtering\n"; $tRNA_counts{secondary_filter} = 0; for (my $i = 0; $i < $tRNAs->get_count(); $i++) { my $tRNA = $tRNAs->get($i); my ($type, $model, $iso_score, $iso_ss) = $tRNA->get_highest_score_model(); if ($opt_isoscore1 > -1 and !$tRNA->is_pseudo() and ($type eq "mito" or ($type eq "cytosolic" and $iso_score < $opt_isoscore1))) { $tRNA->pseudo(1); $tRNA_counts{secondary_filter}++; } elsif ($opt_cmscore1 > -1 and !$tRNA->is_pseudo() and $tRNA->score() < $opt_cmscore1) { $tRNA->pseudo(1); $tRNA_counts{secondary_filter}++; } elsif ($opt_ssscore1 > -1 and !$tRNA->is_pseudo() and $tRNA->ss_score() < $opt_ssscore1 and $tRNA->isotype() ne "SeC") { $tRNA->pseudo(1); $tRNA_counts{secondary_filter}++; } } } sub get_ac_count { my %ac_count = (); for my $ac (sort keys %aa_list) { $ac_count{$ac} = 0; } for (my $i = 0; $i < $tRNAs->get_count(); $i++) { my $tRNA = $tRNAs->get($i); if ($tRNA->is_cytosolic() and !$tRNA->is_pseudo()) { $ac_count{$tRNA->anticodon()} += 1; } } return \%ac_count; } sub get_isotype_count { my %isotype_count = (); my $iso = ""; for my $isotype (sort @isotypes) { $isotype_count{$isotype} = 0; } for (my $i = 0; $i < $tRNAs->get_count(); $i++) { my $tRNA = $tRNAs->get($i); if ($tRNA->is_cytosolic() and !$tRNA->is_pseudo()) { $isotype_count{$tRNA->isotype()} += 1; } } return \%isotype_count; } sub tertiary_filter { print "Status: Tertiary filtering\n"; $tRNA_counts{tertiary_filter} = 0; my %sec_pass_filtered_ac = (); my %iso_score_cutoff = (); my $count_pair = []; my %filtering_isotypes = (); my $tRNA_index = 0; my $start_index = -1; my $end_index = -1; my $isotype_tRNAs = tRNAscanSE::ArraytRNA->new(); my $trna = undef; my $find = 0; my $ac_count = &get_ac_count(); foreach my $ac (sort {$ac_count->{$b} <=> $ac_count->{$a}} keys %$ac_count) { if ($ac_count->{$ac} > $ANTICODON_COUNT_CUTOFF) { if (!defined $filtering_isotypes{$aa_list{$ac}}) { $filtering_isotypes{$aa_list{$ac}} = 1; } } else { last; } } $tRNAs->sort_array("isotype"); foreach my $isotype (sort keys %filtering_isotypes) { $iso_score_cutoff{$isotype} = $opt_isoscore2; $find = 0; $isotype_tRNAs->clear(); $start_index = -1; $end_index = -1; while (!$find and $tRNA_index < $tRNAs->get_count()) { if ($tRNAs->get($tRNA_index)->isotype() lt $isotype) { $tRNA_index++; } elsif ($tRNAs->get($tRNA_index)->isotype() eq $isotype) { if ($start_index == -1) { $start_index = $tRNA_index; } $end_index = $tRNA_index; my $tRNA = $tRNAs->get($tRNA_index); if (!$tRNA->is_pseudo()) { my ($type, $model, $iso_score, $iso_ss) = $tRNA->get_highest_score_model(); $trna = tRNAscanSE::tRNA->new; $trna->tRNAscan_id($tRNA->tRNAscan_id()); $trna->anticodon($tRNA->anticodon()); $trna->score($iso_score); $isotype_tRNAs->put($trna); } $tRNA_index++; } else { $find = 1; } } if ($find) { foreach my $ac (@{$ac_list{$isotype}}) { if ($ac ne " ") { my $local_ac_count = $ac_count->{$ac}; while ($local_ac_count > $ANTICODON_COUNT_CUTOFF and $iso_score_cutoff{$isotype} <= $opt_isomaxscore2) { $local_ac_count = &iso_score_filter($isotype_tRNAs, $ac, $iso_score_cutoff{$isotype}, $local_ac_count); $iso_score_cutoff{$isotype}++; } if ($ac_count->{$ac} > $local_ac_count) { $iso_score_cutoff{$isotype}--; } } } foreach my $ac (@{$ac_list{$isotype}}) { if ($ac ne " ") { $count_pair = []; $count_pair->[0] = $ac_count->{$ac}; $sec_pass_filtered_ac{$ac} = $count_pair; for (my $i = $start_index; $i <= $end_index; $i++) { my $tRNA = $tRNAs->get($i); my ($type, $model, $iso_score, $iso_ss) = $tRNA->get_highest_score_model(); if ($tRNA->isotype() eq $isotype and !$tRNA->is_pseudo()) { if ($type eq "mito" or ($type eq "cytosolic" and $iso_score < $iso_score_cutoff{$isotype})) { $tRNA->pseudo(2); $tRNA_counts{tertiary_filter}++; } } } } } } } $ac_count = &get_ac_count(); foreach my $ac (sort keys %sec_pass_filtered_ac) { $sec_pass_filtered_ac{$ac}->[1] = $ac_count->{$ac}; } return (\%sec_pass_filtered_ac, \%iso_score_cutoff); } sub iso_score_filter { my ($isotype_tRNAs, $ac, $isotype_score_cutoff, $local_ac_count) = @_; my $count = $local_ac_count; for (my $i = 0; $i < $isotype_tRNAs->get_count(); $i++) { my $tRNA = $isotype_tRNAs->get($i); if ($tRNA->anticodon() eq $ac and !$tRNA->is_pseudo()) { if ($tRNA->score() < $isotype_score_cutoff) { $tRNA->pseudo(1); $count--; } } } return $count; } sub write_out_file { my ($ac_count) = @_; my $line = ""; my $tRNA = undef; my %header = (); my @columns = (); my $tRNAscan_id = ""; my $index = -1; my $include = 0; my $tag = ""; my $ct = 0; $tRNA_counts{iso_filter} = 0; $tRNA_counts{undet_filter} = 0; $tRNA_counts{ac_filter} = 0; print "Status: Writing output file $file_names{output_tRNAscan_out}\n"; open(FILE_IN, "$file_names{tRNAscan_out}") or die "Fail to open $file_names{tRNAscan_out}\n"; open(FILE_OUT, ">$file_names{output_tRNAscan_out}") or die "Fail to open $file_names{output_tRNAscan_out}\n"; while ($line = ) { $ct++; print STDERR "." if ($ct % 1000 == 0); print STDERR "\n" if ($ct % 50000 == 0); chomp($line); if ($line =~ /^Name/) { $line =~ s/tRNA #/tRNA#/; } @columns = split(/\t/, $line, -1); for (my $i = 0; $i < scalar(@columns); $i++) { $columns[$i] = &trim($columns[$i]); } if ($columns[0] =~ /^Sequence/ || $columns[0] =~ /^Name/ || $columns[0] =~ /^-----/) { print FILE_OUT $line."\n"; if ($columns[0] =~ /^Sequence/) { for (my $i = 0; $i < scalar(@columns); $i++) { if ($columns[$i] eq "Sequence") { $header{seqname} = $i; } elsif ($columns[$i] eq "Anti") { $header{anticodon} = $i; } elsif ($columns[$i] eq "Type") { $header{isotype_type} = $i; } } } elsif ($columns[0] =~ /^Name/) { for (my $i = 0; $i < scalar(@columns); $i++) { if ($columns[$i] eq "tRNA#") { $header{trna_id} = $i; } elsif ($columns[$i] eq "Type") { $header{isotype} = $i; } elsif ($columns[$i] eq "CM") { $header{isotype_cm} = $i; $header{isotype_score} = $i+1; } elsif ($columns[$i] eq "Note") { $header{note} = $i; } } } } else { $include = 0; $tag = ""; $tRNAscan_id = $columns[$header{seqname}].".trna".$columns[$header{trna_id}]."-".$columns[$header{isotype}].$columns[$header{anticodon}]; $index = $tRNAs->bsearch_id($tRNAscan_id, "tRNAscan_id"); if ($index == -1) { if ($columns[$header{seqname}] eq "chrM" or $columns[$header{seqname}] eq "M" or $columns[$header{seqname}] eq "chrMT" or $columns[$header{seqname}] eq "MT") {} elsif (!$opt_remove) { $include = 1; } } else { $tRNA = $tRNAs->get($index); if ($tRNA->is_pseudo() and !$opt_remove) { $include = 1; if ($tRNA->pseudo() == 1) { $tag = "secondary filtered"; } elsif ($tRNA->pseudo() == 2) { $tag = "tertiary filtered"; } } elsif (!$tRNA->is_pseudo()) { $include = 1; if ($columns[$header{note}] =~ /IPD/ and $columns[$header{isotype}] ne "Sup") { $tRNA_counts{iso_filter}++; $tag = "isotype mismatch"; } elsif ($columns[$header{isotype}] eq "Undet") { $tRNA_counts{undet_filter}++; $tag = "undetermined isotype"; } else { $tag = &euk_anticodon_filter($ac_count, $tRNA); if ($tag eq "") { $tag = "high confidence set"; } } } } if ($include) { for (my $i = 0; $i < $header{note}; $i++) { print FILE_OUT $columns[$i]."\t"; } if ($columns[$header{note}] ne "") { print FILE_OUT $columns[$header{note}]; if ($tag ne "") { print FILE_OUT ",".$tag; } } else { print FILE_OUT $tag; } for (my $i = $header{note} + 1; $i < scalar(@columns); $i++) { print FILE_OUT "\t".$columns[$i]; } print FILE_OUT "\n"; } } } close(FILE_IN); close(FILE_OUT); print STDERR "\n"; } sub write_ss_file { my $tRNA = undef; my $line = ""; my $tRNAscan_id = ""; my $seqname = ""; my $index = -1; my $print_line = ""; my $include = 0; my $tag = ""; my $ct = 0; print "Status: Writing secondary structure file $file_names{output_tRNAscan_ss}\n"; open(FILE_IN, "$file_names{tRNAscan_ss}") || die "Error: Fail to open $file_names{tRNAscan_ss}\n"; open(FILE_OUT, ">$file_names{output_tRNAscan_ss}") or die "Fail to open $file_names{output_tRNAscan_ss}\n"; while ($line = ) { if ($line =~ /^(\S+)\s+\(\d+\-\d+\)\s+Length:\s\d+\sbp/) { $tRNAscan_id = $1; $seqname = substr($tRNAscan_id, 0, rindex($tRNAscan_id, ".")); $print_line = $line; $include = 0; $tag = ""; $ct++; print STDERR "." if ($ct % 1000 == 0); print STDERR "\n" if ($ct % 50000 == 0); } elsif ($line =~ /^Type:\s(\S+)\s+Anticodon:\s(\S+)\sat\s.+\s\(.+\)\s+Score:\s\S+/) { $tRNAscan_id .= "-".$1.$2; $print_line .= $line; $index = $tRNAs->bsearch_id($tRNAscan_id, "tRNAscan_id"); if ($index == -1) { if (!$opt_remove) { $include = 1; $tag = "Filtered"; } } else { $tRNA = $tRNAs->get($index); if ($tRNA->is_pseudo() and !$opt_remove) { $include = 1; $tag = "Filtered"; } elsif (!$tRNA->is_pseudo()) { $include = 1; } } } elsif ($line =~ /^HMM Sc=\S+\s+Sec struct Sc=\S+/) { if ($tag ne "") { $print_line .= $tag.": ".$line; } else { $print_line .= $line; } } elsif (($line =~ /^Possible pseudogene:\s+HMM Sc=\S+\s+Sec struct Sc=\S+/) or ($line =~ /^Possible truncation, pseudogene:\s+HMM Sc=\S+\s+Sec struct Sc=\S+/)) { if ($tag ne "") { $print_line .= $tag.", ".$line; } else { $print_line .= $line; } } elsif ($line =~ /^Possible intron: \d+-\d+ \(\d+-\d+\)/) { $print_line .= $line; } elsif (index($line, " * | * | * |") > -1) { $print_line .= $line; } elsif ($line =~ /^Seq:\s\S+$/) { $print_line .= $line; } elsif ($line =~ /^Str:\s\S+$/) { $print_line .= $line; if ($seqname eq "chrM" or$seqname eq "M" or $seqname eq "chrMT" or $seqname eq "MT") {} elsif ($include) { print FILE_OUT $print_line."\n"; } } } close(FILE_IN); close(FILE_OUT); print STDERR "\n"; } sub write_summary { my ($sec_pass_filtered_ac, $iso_score_cutoff) = @_; print "Status: Writing summary file $file_names{log}\n"; open(FILE_OUT, ">$file_names{log}") or die "Fail to open $file_names{log}\n"; print FILE_OUT "EukHighConfidenceFilter v1.0 Summary\n", "Completed Time: ".localtime()."\n\n"; print FILE_OUT "Inputs\n", "------------------------------------------------------\n", "tRNAscan-SE output file: ".$file_names{tRNAscan_out}."\n", "tRNAscan-SE ss file: ".$file_names{tRNAscan_ss}."\n"; if ($opt_cmscore1 == -1) { print FILE_OUT "Secondary filtering domain-specific model score: Disabled\n"; } else { print FILE_OUT "Secondary filtering domain-specific model score cutoff: $opt_cmscore1\n"; } if ($opt_ssscore1 == -1) { print FILE_OUT "Secondary filtering secondary structure score: Disabled\n"; } else { print FILE_OUT "Secondary filtering secondary structure score cutoff: $opt_ssscore1\n"; } if ($opt_isoscore1 == -1) { print FILE_OUT "Secondary filtering isotype-specific model score: Disabled\n"; } else { print FILE_OUT "Secondary filtering isotype-specific model score cutoff: $opt_isoscore1\n"; } if ($opt_isoscore2 == -1) { print FILE_OUT "Tertiary filtering isotype-specific model score: Disabled\n"; } else { print FILE_OUT "Tertiary filtering isotype-specific model starting score cutoff: $opt_isoscore2\n"; print FILE_OUT "Tertiary filtering maximum isotype-specific model score cutoff: $opt_isomaxscore2\n"; } if ($opt_remove) { print FILE_OUT "Remove filtered hits: Yes\n"; } else { print FILE_OUT "Remove filtered hits: No\n"; } print FILE_OUT "\n"; print FILE_OUT "Outputs\n", "------------------------------------------------------\n", "tRNAscan-SE output file: ".$file_names{output_tRNAscan_out}."\n", "tRNAscan-SE ss file: ".$file_names{output_tRNAscan_ss}."\n", "Summary file: ".$file_names{log}."\n\n"; my $remaining_hits = $tRNA_counts{total} - $tRNA_counts{pseudo_filter}; print FILE_OUT "Summary statistics\n", "------------------------------------------------------\n"; print FILE_OUT "Total tRNA predictions: ".$tRNA_counts{total}."\n"; print FILE_OUT "Possible pseudogenes: ".$tRNA_counts{pseudo_filter}."\n"; if ($opt_isoscore1 > -1 or $opt_ssscore1 > -1 or $opt_cmscore1 > -1) { print FILE_OUT "tRNAs with scores lower than secondary cutoffs: ".$tRNA_counts{secondary_filter}."\n"; $remaining_hits -= $tRNA_counts{secondary_filter}; } if ($opt_isoscore2 > -1) { $remaining_hits -= $tRNA_counts{tertiary_filter}; print FILE_OUT "tRNAs failed tertiary filter: ".$tRNA_counts{tertiary_filter}."\n\n"; } print FILE_OUT "tRNAs after filtering: ".$remaining_hits."\n\n"; print FILE_OUT "tRNAs with mismatched isotype: ".$tRNA_counts{iso_filter}."\n"; print FILE_OUT "tRNAs with undetermined isotype: ".$tRNA_counts{undet_filter}."\n"; print FILE_OUT "tRNAs with unexpected anticodon: ".$tRNA_counts{ac_filter}."\n\n"; print FILE_OUT "High confidence set: ".($remaining_hits - $tRNA_counts{iso_filter} - $tRNA_counts{undet_filter} - $tRNA_counts{ac_filter})."\n\n"; if ($opt_isoscore2 > -1 and $tRNA_counts{tertiary_filter} > 0) { print FILE_OUT "Tertiary filter - anticodon counts\n", "------------------------------------------------------\n\n"; print FILE_OUT "Isotype Anticodon BeforeFiltering AfterFiltering FinalScoreCutoff\n"; foreach my $isotype (sort keys %$iso_score_cutoff) { foreach my $ac (@{$ac_list{$isotype}}) { if ($ac ne " " and defined $euk_aa_list{$ac}) { printf FILE_OUT "%-7s %-9s %-15d %-14d %-16d\n", $isotype, $ac, $sec_pass_filtered_ac->{$ac}->[0], $sec_pass_filtered_ac->{$ac}->[1], $iso_score_cutoff->{$isotype}; } } } print FILE_OUT "\n"; } my $ac_count = &get_ac_count(); my %isotype_count = (); foreach my $ac (sort keys %aa_list) { if (!defined $isotype_count{$aa_list{$ac}}) { $isotype_count{$aa_list{$ac}} = $ac_count->{$ac}; } else { $isotype_count{$aa_list{$ac}} += $ac_count->{$ac}; } } print FILE_OUT "Isotype / Anticodon Counts After Filtering\n", "------------------------------------------------------\n\n"; foreach my $aa (@isotypes) { my $iso_count = 0; if (defined $isotype_count{$aa}) { $iso_count = $isotype_count{$aa}; } if ($aa eq "SeC") { printf FILE_OUT ("%-8s: %d\t", "SelCys", $iso_count); } elsif ($aa eq "Sup") { printf FILE_OUT ("%-8s: %d\t", "Supres", $iso_count); } else { printf FILE_OUT ("%-8s: %d\t", $aa, $iso_count); } foreach my $ac (@{$ac_list{$aa}}) { if ($ac eq " ") { print FILE_OUT " "; } else { if (defined $ac_count->{$ac}) { printf FILE_OUT ("%5s: %-6s", $ac, $ac_count->{$ac}); } else { printf FILE_OUT ("%5s: %-6s", $ac, ""); } } } print FILE_OUT "\n"; } print FILE_OUT "\n"; close(FILE_OUT); } sub trim { my $string = shift; $string =~ s/^\s+//; $string =~ s/\s+$//; return $string; } tRNAscan-SE-2.0/config.h.in0000644000543100007160000000673113100451013014650 0ustar pchanlowelab/* config.h.in. Generated from configure.ac by autoheader. */ /* Define to one of `_getb67', `GETB67', `getb67' for Cray-2 and Cray-YMP systems. This function is required for `alloca.c' support on those systems. */ #undef CRAY_STACKSEG_END /* Define to 1 if using `alloca.c'. */ #undef C_ALLOCA /* Define to 1 if you have `alloca', as a function or macro. */ #undef HAVE_ALLOCA /* Define to 1 if you have and it should be used (not on Ultrix). */ #undef HAVE_ALLOCA_H /* Define to 1 if you have the `bzero' function. */ #undef HAVE_BZERO /* Define to 1 if you have the header file. */ #undef HAVE_INTTYPES_H /* Define to 1 if you have the header file. */ #undef HAVE_LIMITS_H /* Define to 1 if your system has a GNU libc compatible `malloc' function, and to 0 otherwise. */ #undef HAVE_MALLOC /* Define to 1 if you have the header file. */ #undef HAVE_MEMORY_H /* Define to 1 if you have the `memset' function. */ #undef HAVE_MEMSET /* Define to 1 if your system has a GNU libc compatible `realloc' function, and to 0 otherwise. */ #undef HAVE_REALLOC /* Define to 1 if you have the `regcomp' function. */ #undef HAVE_REGCOMP /* Define to 1 if you have the `re_comp' function. */ #undef HAVE_RE_COMP /* Define to 1 if you have the `sqrt' function. */ #undef HAVE_SQRT /* Define to 1 if you have the header file. */ #undef HAVE_STDDEF_H /* Define to 1 if you have the header file. */ #undef HAVE_STDINT_H /* Define to 1 if you have the header file. */ #undef HAVE_STDLIB_H /* Define to 1 if you have the `strcasecmp' function. */ #undef HAVE_STRCASECMP /* Define to 1 if you have the `strchr' function. */ #undef HAVE_STRCHR /* Define to 1 if you have the header file. */ #undef HAVE_STRINGS_H /* Define to 1 if you have the header file. */ #undef HAVE_STRING_H /* Define to 1 if you have the `strstr' function. */ #undef HAVE_STRSTR /* Define to 1 if you have the header file. */ #undef HAVE_SYS_STAT_H /* Define to 1 if you have the header file. */ #undef HAVE_SYS_TYPES_H /* Define to 1 if you have the header file. */ #undef HAVE_UNISTD_H /* Define to 1 if the system has the type `_Bool'. */ #undef HAVE__BOOL /* Name of package */ #undef PACKAGE /* Define to the address where bug reports for this package should be sent. */ #undef PACKAGE_BUGREPORT /* Define to the full name of this package. */ #undef PACKAGE_NAME /* Define to the full name and version of this package. */ #undef PACKAGE_STRING /* Define to the one symbol short name of this package. */ #undef PACKAGE_TARNAME /* Define to the home page for this package. */ #undef PACKAGE_URL /* Define to the version of this package. */ #undef PACKAGE_VERSION /* If using the C implementation of alloca, define if you know the direction of stack growth for your system; otherwise it will be automatically deduced at runtime. STACK_DIRECTION > 0 => grows toward higher addresses STACK_DIRECTION < 0 => grows toward lower addresses STACK_DIRECTION = 0 => direction of growth unknown */ #undef STACK_DIRECTION /* Define to 1 if you have the ANSI C header files. */ #undef STDC_HEADERS /* Version number of package */ #undef VERSION /* Define to rpl_malloc if the replacement function should be used. */ #undef malloc /* Define to rpl_realloc if the replacement function should be used. */ #undef realloc /* Define to `unsigned int' if does not define. */ #undef size_t tRNAscan-SE-2.0/tRNAscan-SE.src0000755000543100007160000020774413546744026015355 0ustar pchanlowelab#! @PERL@ # # -------------------------------------------------------------------- # tRNAscan-SE: a program for improved detection of transfer RNA # genes in genomic sequence # # Version 2.0.5 # # Copyright (C) 2019 Patricia Chan and Todd Lowe # # School of Engineering, University of California, Santa Cruz # lowe@soe.ucsc.edu # http://lowelab.ucsc.edu/ # -------------------------------------------------------------------- # # Usage: # tRNAscan-SE [options] # use strict; use lib "@libdir@/tRNAscan-SE"; use Getopt::Long; use tRNAscanSE::Configuration; use tRNAscanSE::tRNA; use tRNAscanSE::SprinzlPos; use tRNAscanSE::ArraytRNA; use tRNAscanSE::Utils; use tRNAscanSE::GeneticCode; use tRNAscanSE::Options; use tRNAscanSE::Eufind; use tRNAscanSE::Tscan; use tRNAscanSE::CM; use tRNAscanSE::LogFile; use tRNAscanSE::Stats; use tRNAscanSE::Sequence; use tRNAscanSE::FpScanResultFile; use tRNAscanSE::ScanResult; use tRNAscanSE::IntResultFile; use tRNAscanSE::MultiResultFile; use tRNAscanSE::SS; our $version = "2.0.5"; our $release_date = "October 2019"; our $program_id = "tRNAscan-SE-".$version; # modified by 'make' our $default_conf = "@bindir@/tRNAscan-SE.conf"; # Signal handling $SIG{'TERM'} = 'error_handler'; $SIG{'QUIT'} = 'error_handler'; $SIG{'INT'} = 'error_handler'; # Global variables our @fp_start_time; our $opts = tRNAscanSE::Options->new; our $global_constants = tRNAscanSE::Configuration->new(); our $log = tRNAscanSE::LogFile->new("default"); our $sprinzl = tRNAscanSE::SprinzlPos->new; our $fp_tRNAs = tRNAscanSE::ArraytRNA->new; our $sp_tRNAs = tRNAscanSE::ArraytRNA->new; our $fp_result_file = tRNAscanSE::FpScanResultFile->new(""); our $sp_int_results = tRNAscanSE::IntResultFile->new; our $iso_int_results = tRNAscanSE::MultiResultFile->new; our $gc = tRNAscanSE::GeneticCode->new; our $stats = tRNAscan::Stats->new; our $seq_file = tRNAscanSE::Sequence->new; our $eufind = tRNAscanSE::Eufind->new; our $tscan = tRNAscanSE::Tscan->new; our $cm = tRNAscanSE::CM->new; $global_constants->config_file($default_conf); our %global_vars = (global_constants => $global_constants, log_file => $log, options => $opts, sprinzl => $sprinzl, fp_tRNAs => $fp_tRNAs, sp_tRNAs => $sp_tRNAs, fp_result_file => $fp_result_file, sp_int_results => $sp_int_results, iso_int_results => $iso_int_results, sequence => $seq_file, gc => $gc, stats => $stats ); # set user-selectable options &set_options(); # set location of binaries & data files, # plus, check to make sure they are there $cm->set_file_paths(\%global_vars); $cm->check_lib_files($opts); $cm->set_bin($global_constants->get("bin_dir")); $cm->set_infernal_bin($global_constants->get("infernal_dir")); $eufind->set_bin($global_constants->get("bin_dir")); $tscan->set_bin($global_constants->get("bin_dir")); # initialize variables $gc->read_transl_table($opts); if ($opts->save_stats()) { $stats->file_name($opts->stats_file()); } # Start processing &initialize_process(); # prescan with either tRNAscan/eufind or both if ($opts->tscan_mode() || $opts->eufind_mode() || $opts->infernal_fp()) { &first_pass_prescan(); } # Check to see if no sequences were read from input file(s) if (($stats->numscanned() == 0) && ($opts->eufind_mode() || $opts->tscan_mode() || $opts->infernal_fp())) { if ($opts->seq_key() ne '\S*') { die "\nNo FASTA sequences matching \'".$opts->raw_seq_key()."\' key found\n\n"; } elsif ($opts->multiple_files()) { die "\nFATAL: No sequences in FASTA format found in ", join(', ',@ARGV),"\n\n"; } else { die "\nFATAL: No sequences in FASTA format found in file ".$opts->fasta_file()."\n\n"; } } # Run Cove or Infernal on candidate tRNAs picked in first pass, # or by itself on seqs if no first pass searches elsif ($opts->cove_mode() || $opts->infernal_mode()) { $sp_int_results->file_name($opts->secondpass_int_result_file()); $iso_int_results->file_name($opts->isotype_int_result_file()); &run_cm_scan(); } $stats->end_sp_timer(); if ($opts->save_stats()) { $stats->open_file(); $stats->save_final_stats($opts, $gc, $fp_result_file->get_hit_count(), $cm->tab_results()); $stats->close_file(); } $log->finish_process(); &cleanup(); # clean up temp files exit(0); # END main sub initialize_process { # print program info header, credits, & selected run options if (!$opts->quiet_mode()) { print STDERR "\ntRNAscan-SE v.$version ($release_date) -", " scan sequences for transfer RNAs\n"; &display_credits(); $opts->display_run_options($cm, $tscan, $eufind, $global_constants, *STDERR); } $stats->start_fp_timer(); # save starting time # if statistics are being saved, write run options in stats file if ($opts->save_stats()) { my $host = `hostname`; chomp($host); $stats->open_file(); $stats->write_line("\ntRNAscan-SE v.$version ($release_date) scan results (on host $host)\nStarted: ".`date`); $opts->display_run_options($cm, $tscan, $eufind, $global_constants, $stats->FILE_H()); $stats->close_file(); } } # Running tRNAscan and/or EufindtRNA sub first_pass_prescan { if ($opts->infernal_fp()) { $log->status("Phase I: Searching for tRNAs with HMM-enabled Infernal"); } else { $log->status("Phase I: Searching for tRNAs with tRNAscan and/or EufindtRNA"); } # open seq file to search $seq_file->open_file($opts->fasta_file(), "read"); # Main loop for reading seqs & scanning with tRNAscan and/or EufindtRNA my $targ_seq_id = 0; # Don't look for a specific Seq number my $start_index = 1; my $sequence_scanned = 0; my $printed_header = 0; my $eufind_output; my @hit_list = (); my $tmp_raw = $global_constants->get("tmp_raw"); my $tmp_fa = $global_constants->get("tmp_fa"); my $tmp_fa_file = tRNAscanSE::Sequence->new; my $missing_fa_file = tRNAscanSE::Sequence->new; while ($seq_file->read_fasta($opts, $targ_seq_id)) { if ($opts->cove_mode() || $opts->infernal_mode()) { $log->broadcast("Scanned seqs: ".$stats->numscanned()." (at ".$seq_file->seq_name().")"); } $stats->increment_numscanned(); $stats->increment_first_pass_base_ct($seq_file->seq_length()); do { # Write one input sequence / seq buffer to tmp_fa file $tmp_fa_file->open_file($tmp_fa, "write"); $tmp_fa_file->set_seq_info($seq_file->seq_name(), $seq_file->seq_description(), $seq_file->seq_length(), $seq_file->sequence()); $tmp_fa_file->write_fasta(); $tmp_fa_file->close_file(); if ($opts->infernal_fp()) { $cm->first_pass_scan(\%global_vars, $start_index, $seq_file->seq_name()); } else { # Run tRNAscan on $tmp_fa file & write results to $tmp_raw output file if ($opts->tscan_mode()) { $tscan->run_tRNAscan($tmp_fa, $tmp_raw, $start_index, $global_constants->get("lib_dir"), $seq_file->seq_name()); if ($opts->save_verbose()) { $tscan->append_verbfile($opts->verb_file(), $tmp_fa, $seq_file->seq_name()); } $tscan->process_tRNAscan_hits(\%global_vars, $seq_file->seq_name()); } # Run eufindtRNA program & save results in memory in $Eufind_output array if ($opts->eufind_mode()) { $eufind_output = $eufind->run_eufind($tmp_fa, $start_index, $opts->max_int_len(), $seq_file->seq_name()); if ($eufind_output ne "") { $eufind->process_Eufind_hits(\%global_vars, $eufind_output); $eufind_output = ""; } } } $sequence_scanned = 1; # Flag indicating current sequence has been scanned # Check to see if all of sequence was read in last buffer-sized chunck if ($seq_file->seq_buf_overrun()) { $start_index = $seq_file->buffer_end_index() + 1; if ($seq_file->read_more_fasta($opts)) { $sequence_scanned = 0; } } } until ($sequence_scanned); if ($fp_tRNAs->get_count() > 0) { $stats->increment_seqs_hit(); # save results in ACeDB format now if not using Cove analysis if ($opts->ace_output() && (!$opts->CM_mode())) { &save_Acedb_from_firstpass($opts->output_codon(), $gc->one_let_trans_map(), $fp_tRNAs, $opts->out_file()); } else { # save all hits for this seq my $fpass_trna_base_ct = $stats->fpass_trna_base_ct(); if (!$opts->CM_mode()) { if (!($opts->brief_output() || $printed_header)) { &open_for_append(\*TABOUT, $opts->out_file()); &print_results_header(\*TABOUT, $opts, 0, 8, 8, 1); close (TABOUT); $printed_header = 1; } } $fp_result_file->save_firstpass_output($opts, $fp_tRNAs, \$fpass_trna_base_ct, $seq_file->seq_length(), $seq_file->seq_id()); $stats->fpass_trna_base_ct($fpass_trna_base_ct); } # clear hit array $fp_tRNAs->clear(); } elsif ($opts->save_missed()) { # save sequence that had no tRNA hits if -M param set # NOTE: only writes last frame of seq buffer if seq length > max_seq_buffer $missing_fa_file->open_file($opts->missed_seq_file(), "append"); $missing_fa_file->set_seq_info($seq_file->seq_name(), $seq_file->seq_description(), $seq_file->seq_length(), $seq_file->sequence()); $missing_fa_file->write_fasta(); $missing_fa_file->close_file(); } $seq_file->reset_buffer_ct(); $start_index = 1; } # while (read_fasta()) - still more seqs to scan $seq_file->close_file(); # remove temporary files system("rm -f $tmp_raw $tmp_fa"); $seq_file->release_memory(); # release memory $log->broadcast("\n".$stats->numscanned()." seqs scanned, ".$stats->seqs_hit()." seqs had at ". "least one hit.\n".$stats->trnatotal()." total tRNAs predicted in first pass scans"); if ((!$opts->CM_mode()) && ($stats->trnatotal() == 0) && (!$opts->quiet_mode())) { $log->status("No tRNAs found."); } $stats->end_fp_timer(); # save time first-pass scans are done if ($opts->save_stats()) { $stats->open_file(); $stats->save_firstpass_stats(); $stats->close_file(); } } # Run Cove or Infernal sub run_cm_scan { $stats->start_sp_timer(); if ($opts->tscan_mode() || $opts->eufind_mode() || $opts->infernal_fp()) { $log->status("Phase II: ".$opts->second_pass_label()." verification of candidate ". "tRNAs detected with first-pass scan"); } else { $log->status("Running ".$opts->second_pass_label()." analysis"); if (!$opts->use_prev_ts_run()) { $fp_result_file->prep_for_secpass_only($opts, $stats, $seq_file); } } # Name of tRNA sequence currently in memory my $prev_seq_name = ''; # flag indicates if seqid and seqlen are saved in firstpass result file my $seqinfo_flag = 0; my $curseq_trnact = 0; my $prescan_trna = tRNAscanSE::tRNA->new; my $tRNAs_found = 0; my $index = -1; $seq_file->open_file($opts->fasta_file(), "read"); $fp_result_file->index_results(\$seqinfo_flag); my @fp_result_file_indexes = $fp_result_file->get_indexes(); $fp_result_file->open_file(); for (my $seq_ct = 0; $seq_ct < scalar(@fp_result_file_indexes); $seq_ct++) { $sp_int_results->file_name($opts->secondpass_int_result_file()); $global_vars{sp_int_results} = $sp_int_results; $sp_int_results->open_file("write"); $sp_tRNAs->clear(); $log->broadcast("Scanning ".$fp_result_file_indexes[$seq_ct]->[1]); if ($opts->cove_mode()) { $fp_result_file->reset_current_seq(); $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_trna); while ($prescan_trna->seqname() ne "") { # Retrieve tRNA sequence and write to tmp_trnaseq_file if (!&prepare_tRNA_to_scan($seq_file, $prescan_trna)) { next; } $tRNAs_found = $cm->analyze_with_cove(\%global_vars, $prescan_trna, \$curseq_trnact); if (!$cm->CM_check_for_introns()) { $stats->increment_total_secpass_ct($tRNAs_found); } $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $prescan_trna); } } else { # Retrieve tRNA sequences and write to tmp_trnaseq_file if (!&prepare_multi_tRNAs_to_scan($seqinfo_flag, $seq_file, $seq_ct)) { next; } if ($opts->mito_mode()) { $tRNAs_found = $cm->analyze_mito(\%global_vars, $seqinfo_flag, $seq_ct, $fp_result_file_indexes[$seq_ct]->[1], \$curseq_trnact); } elsif($opts->alternate_mode()) { $tRNAs_found = $cm->analyze_alternate(\%global_vars, $seqinfo_flag, $seq_ct, $fp_result_file_indexes[$seq_ct]->[1], \$curseq_trnact); } elsif ($opts->metagenome_mode()) { } elsif ($opts->numt_mode()) { } elsif ($opts->infernal_mode()) { $tRNAs_found = $cm->analyze_with_cmsearch(\%global_vars, $seqinfo_flag, $seq_ct, $fp_result_file_indexes[$seq_ct]->[1], \$curseq_trnact); } $stats->increment_total_secpass_ct($tRNAs_found); } $sp_int_results->close_file(); if (($curseq_trnact > 0) and $cm->CM_check_for_introns()) { if (&prepare_intron_scan($seq_file)) { $cm->scan_noncanonical_introns(\%global_vars, $fp_result_file_indexes[$seq_ct]->[1]); } } if ($curseq_trnact > 0) { if ($opts->euk_mode() or $opts->bact_mode() or $opts->arch_mode()) { $cm->truncated_tRNA_search(\%global_vars, $fp_result_file_indexes[$seq_ct]->[1]); if (!$opts->no_isotype()) { $cm->isotype_cmsearch(\%global_vars); } } &output_tRNA(\%global_vars, $cm, $cm->tab_results(), $cm->get_hmm_score(), $program_id); } if (($sp_int_results->get_count() > 0) and $cm->CM_check_for_split_halves()) { my @sp_indexes = $sp_int_results->get_indexes(); if ($sp_int_results->open_file("read")) { for (my $i = 0; $i < scalar(@sp_indexes); $i++) { my $cm_tRNA = tRNAscanSE::tRNA->new; $sp_int_results->get_tRNA($sp_indexes[$i]->[0], $cm_tRNA); $sp_tRNAs->put($cm_tRNA); } $sp_int_results->close_file(); $cm->scan_split_tRNAs(\%global_vars); } } if ($opts->bed_file() ne "") { if ($curseq_trnact > 0) { &write_bed(\%global_vars); } } $sp_int_results->clear_index(); $curseq_trnact = 0; } $fp_result_file->close_file(); $seq_file->close_file(); if (($stats->total_secpass_ct() == 0) && (!$opts->quiet_mode())) { print STDERR "No tRNAs found.\n\n"; } } # Extracts tRNA sequences with given coordinates, and writes to $tmp_ sub prepare_multi_tRNAs_to_scan { my ($seqinfo_flag, $seq_file, $seq_ct) = @_; system("rm -f ".$global_constants->get("tmp_trnaseq_file")); my $trna_file = tRNAscanSE::Sequence->new; $trna_file->open_file($global_constants->get("tmp_trnaseq_file"), "write"); my $flanking = 0; my $trna = tRNAscanSE::tRNA->new; $fp_result_file->reset_current_seq(); $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $trna); if ($fp_result_file->open_flanking("write")) { $flanking = 1; } while ($trna->seqname() ne "") { $seq_file->get_tRNA_sequence(\%global_vars, $trna); $stats->increment_secpass_base_ct($trna->len()); $trna_file->set_seq_info($trna->seqname().".t".&pad_num($trna->id(), 6), $seq_file->seq_description(), length($trna->seq()), $trna->seq()); $trna_file->write_fasta(); if ($flanking) { $fp_result_file->write_tRNA_flanking($trna); } $seq_file->release_memory(); $fp_result_file->get_next_tRNA_candidate($opts, $seqinfo_flag, $seq_ct, $trna); } $trna_file->close_file(); $fp_result_file->close_flanking(); return 1; } # Extracts tRNA sequence with given coordinates, and writes to $tmp_ sub prepare_tRNA_to_scan { my ($seq_file, $trna) = @_; $seq_file->get_tRNA_sequence(\%global_vars, $trna); $stats->increment_secpass_base_ct($trna->len()); &write_tRNA($global_constants->get("tmp_trnaseq_file"), $seq_file->seq_name(), $seq_file->seq_description(), $trna->seq(), 1); $seq_file->release_memory(); return 1; } # Extracts tRNA sequences with given coordinates, and writes to $tmp_ sub prepare_intron_scan { my ($seq_file) = @_; my $ret_value = 1; system("rm -f ".$global_constants->get("tmp_trnaseq_file")); my $trna_file = tRNAscanSE::Sequence->new; my $cm_tRNA = undef; $trna_file->open_file($global_constants->get("tmp_trnaseq_file"), "write"); my $trna = tRNAscanSE::tRNA->new; my $padded_seq = ""; $sp_tRNAs->clear(); my @sp_indexes = $sp_int_results->get_indexes(); if ($sp_int_results->open_file("read")) { for (my $i = 0; $i < scalar(@sp_indexes); $i++) { $cm_tRNA = tRNAscanSE::tRNA->new; $sp_int_results->get_tRNA($sp_indexes[$i]->[0], $cm_tRNA); my $orig_seq = $cm_tRNA->seq(); $seq_file->get_tRNA_sequence(\%global_vars, $cm_tRNA); if (uc($orig_seq) ne uc($cm_tRNA->seq())) { $ret_value = 0; $log->error("tRNA sequence does not match for intron scan: ".$cm_tRNA->tRNAscan_id()." ".$cm_tRNA->seqname().":".$cm_tRNA->start()."-".$cm_tRNA->end()); } $padded_seq = $cm_tRNA->upstream().$cm_tRNA->seq().$cm_tRNA->downstream(); $trna_file->set_seq_info($cm_tRNA->seqname().".trna".&pad_num($cm_tRNA->id(), 6), $cm_tRNA->tRNAscan_id(), length($padded_seq), $padded_seq); $trna_file->write_fasta(); $sp_tRNAs->put($cm_tRNA); $seq_file->release_memory(); } $sp_int_results->close_file(); } $trna_file->close_file(); return $ret_value; } # clean up temp files sub cleanup { system("rm -f ".$global_constants->get("temp_dir")."/tscan$$".'*'); system("rm -f ".$opts->fafile().".pid"); } sub error_handler { print "\nAborting tRNAscan-SE\n\n"; my $ppid = $$; my $psout = `ps -ef`; my @ps_lines = split(/\n/,$psout); foreach my $line (0..$#ps_lines) { if ($ps_lines[$line] =~/^\s+\S+\s+(\d+)\s+($ppid)\s/) { print STDERR "Killing process $1:\n",$ps_lines[$line],"\n"; my $killct = kill 'KILL', $1; print STDERR "$killct jobs received the kill signal\n"; } } &cleanup(); exit(1); } sub display_credits { print STDERR "Copyright (C) 2019 Patricia Chan and Todd Lowe\n", " University of California Santa Cruz\n", "Freely distributed under the GNU General Public License (GPLv3)\n\n"; } sub print_usage { print STDERR "\nUsage: tRNAscan-SE [-options] \n\n"; print STDERR " Scan a sequence file for tRNAs \n", " -- default: use Infernal & tRNA covariance models\n", " with eukaryotic sequences \n", " (use -B, -A, -M, -O or -G to scan other types of sequences)\n\n", "Basic Options\n", " -E : search for eukaryotic tRNAs (default)\n", " -B : search for bacterial tRNAs\n", " -A : search for archaeal tRNAs\n", " -M : search for mitochondrial tRNAs\n", " options: mammal, vert\n", " -O : search for other organellar tRNAs\n", " -G : use general tRNA model (cytoslic tRNAs from all 3 domains included)\n", " -L : search using the legacy method (tRNAscan, EufindtRNA, and COVE)\n", " use with -E, -B, -A, -O, or -G\n", " -I : search using Infernal (default)\n", " use with -E, -B, -A, -O, or -G\n", # " -T : search for tRNAs in metagenome\n", # " -N : search for tRNAs in nuclear mitochondrial DNA regions (NUMTs)\n", " -o : save final results in \n", " -f : save tRNA secondary structures to \n", " -m : save statistics summary for run in \n", " (speed, # tRNAs found in each part of search, etc)\n", " -H : show both primary and secondary structure components to\n", " covariance model bit scores\n", " -q : quiet mode (credits & run option selections suppressed)\n\n", " -h : print full list (long) of available options\n\n"; } sub print_all_options { print "\nUsage: tRNAscan-SE [-options] \n\n"; print " Scan a sequence file for tRNAs \n", " -- default: use Infernal & tRNA covariance models\n", " with eukaryotic sequences \n", " (use 'Search Mode Options' below to scan other types of sequences)\n\n", "Search Mode Options:\n\n", " -E : search for eukaryotic tRNAs (default)\n", " -B : search for bacterial tRNAs\n", " -A : search for archaeal tRNAs\n", " -M : search for mitochondrial tRNAs\n", " options: mammal, vert\n", " -O : search for other organellar tRNAs\n", " -G : use general tRNA model (cytoslic tRNAs from all 3 domains included)\n", " --mt : use mito tRNA models for cytosolic/mito detemination\n", " (if not specified, only cytosolic isotype-specific model scan will be performed)\n", # " -T : search for tRNAs in metagenome\n", # " -N : search for tRNAs in nuclear mitochondrial DNA regions (NUMTs)\n", " -I : search using Infernal\n", " default use with -E, -B, -A, or -G; optional for -O\n", " --max : maximum sensitivity mode - search using Infernal without hmm filter (very slow)\n", " -L : search using the legacy method (tRNAscan, EufindtRNA, and COVE)\n", " use with -E, -B, -A or -G\n", " -C --cove : search using COVE analysis only (legacy, extremely slow)\n", " default use with -O\n", " -H --breakdown : show breakdown of primary and secondary structure components to\n", " covariance model bit scores\n", " -D --nopseudo : disable pseudogene checking\n\n", "Output options:\n\n", " -o --output : save final results in \n", " -f --struct : save tRNA secondary structures to \n", " -s --isospecific : save results using isotype-specific models in \n", " -m --stats : save statistics summary for run in \n", " (speed, # tRNAs found in each part of search, etc)\n", " -b --bed : save results in BED file format of \n", " -a --fasta : save predicted tRNA sequences in FASTA file format of \n", " -l --log : save log of program progress in \n", " --detail : display prediction outputs in detailed view\n", " --brief : brief output format (no column headers)\n\n", " -? \# : '#' in place of chooses default name for output files\n", " -p --prefix

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