debian/0000755000000000000000000000000012205636134007170 5ustar debian/README.test0000644000000000000000000000043512205626170011027 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(affyio)’ in order to confirm its integrity. debian/source/0000755000000000000000000000000011743744040010472 5ustar debian/source/format0000644000000000000000000000001411743742137011705 0ustar 3.0 (quilt) debian/copyright0000644000000000000000000000105512205633340011120 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: affyio Upstream-Contact: Benjamin Milo Bolstad Source: http://www.bioconductor.org/packages/2.12/bioc/html/affyio.html Files: * Copyright: © 2006-2013 Benjamin Milo Bolstad License: LGPL-2.1+ Files: debian/* Copyright: 2013 Andreas Tille License: LGPL-2.1+ License: LGPL-2.1+ On Debian GNU/Linux system you can find the complete text of the LGPL license in '/usr/share/common-licenses/LGPL-2.1'. debian/rules0000755000000000000000000000025012205634105010241 0ustar #!/usr/bin/make -f debRreposname=bioc include /usr/share/R/debian/r-cran.mk install/$(package):: rm -rf debian/$(package)/usr/lib/R/site-library/$(cranName)/LICENSE debian/patches/0000755000000000000000000000000012205632660010617 5ustar debian/patches/series0000644000000000000000000000003712205630701012026 0ustar use_debian_packaged_zlib.patch debian/patches/use_debian_packaged_zlib.patch0000644000000000000000000000142012205632660016572 0ustar Author: Andreas Tille LastChanged: Fri, 23 Aug 2013 12:11:49 +0200 Description: If the systems includes zlib natively there is no point in requiring the import of zlibbioc --- a/NAMESPACE +++ b/NAMESPACE @@ -1,4 +1,3 @@ exportPattern("^[^\\.]") useDynLib("affyio") -import(zlibbioc) --- a/DESCRIPTION +++ b/DESCRIPTION @@ -4,7 +4,6 @@ Title: Tools for parsing Affymetrix data Author: Benjamin Milo Bolstad Maintainer: Benjamin Milo Bolstad Depends: R (>= 2.6.0), methods -Imports: zlibbioc Description: Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats. License: LGPL (>= 2) biocViews: Microarray, DataImport, Infrastructure debian/watch0000644000000000000000000000024412205627270010222 0ustar version=3 opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \ http://www.bioconductor.org/packages/release/bioc/html/affyio.html .*/affyio_([\d\.]+)\.tar\.gz debian/changelog0000644000000000000000000000023512205636134011042 0ustar r-bioc-affyio (1.28.0-1) unstable; urgency=low * Initial release (closes: #720546) -- Andreas Tille Fri, 23 Aug 2013 12:11:49 +0200 debian/compat0000644000000000000000000000000212205374244010367 0ustar 9 debian/control0000644000000000000000000000163712205632534010602 0ustar Source: r-bioc-affyio Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, zlib1g-dev, r-base-dev Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-affyio/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-affyio/trunk/ Homepage: http://bioconductor.org/packages/2.12/bioc/html/affyio.html Package: r-bioc-affyio Architecture: any Depends: ${R:Depends}, ${shlibs:Depends}, ${misc:Depends} Description: BioConductor tools for parsing Affymetrix data files This BioConductor package provides routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.