debian/0000755000000000000000000000000012247130665007174 5ustar debian/control0000644000000000000000000000231112247127540010572 0ustar Source: r-bioc-altcdfenvs Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biostrings, r-bioc-affy, r-bioc-hypergraph, r-bioc-makecdfenv Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-altcdfenvs/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-altcdfenvs/trunk/ Homepage: http://bioconductor.org/packages/release/bioc/html/altcdfenvs.html Package: r-bioc-altcdfenvs Architecture: all Depends: ${R:Depends}, ${misc:Depends}, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biostrings, r-bioc-affy, r-bioc-hypergraph, r-bioc-makecdfenv Description: BioConductor alternative CDF environments This BioConductor module provides alternative CDF environments (aka probeset mappings) which are Convenience data structures and functions to handle cdfenvs. debian/rules0000755000000000000000000000011512221645510010241 0ustar #!/usr/bin/make -f debRreposname=bioc include /usr/share/R/debian/r-cran.mk debian/watch0000644000000000000000000000025412221645510010216 0ustar version=3 opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \ http://www.bioconductor.org/packages/release/bioc/html/altcdfenvs.html .*/altcdfenvs_([\d\.]+)\.tar\.gz debian/upstream0000644000000000000000000000063412221645510010752 0ustar Reference: Author: Laurent Gautier and Morten Mooller and Lennart Friis-Hansen and Steen Knudsen Title: Alternative mapping of probes to genes for Affymetrix chips Journal: BMC Bioinformatics Year: 2004 Number: 5 Pages: 111 DOI: doi:10.1186/1471-2105-5-111 PMID: 15310390 URL: http://www.biomedcentral.com/1471-2105/5/111/ eprint: http://www.biomedcentral.com/content/pdf/1471-2105-5-111.pdf debian/copyright0000644000000000000000000001231212230174127011117 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: altcdfenvs Upstream-Contact: Laurent Gautier Source: http://www.bioconductor.org/packages/release/bioc/html/altcdfenvs.html Files: * Copyright: © 2006-2013 Laurent Gautier License: Artistic-2.0 Files: debian/* Copyright: 2013 Andreas Tille License: Artistic-2.0 License: Artistic-2.0 The "Artistic License" . 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THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE. debian/source/0000755000000000000000000000000012221645510010464 5ustar debian/source/format0000644000000000000000000000001412221645510011672 0ustar 3.0 (quilt) debian/README.test0000644000000000000000000000044112221645510011021 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(altcdfenvs)’ in order to confirm its integrity. debian/changelog0000644000000000000000000000024112247130665011043 0ustar r-bioc-altcdfenvs (2.24.0-1) unstable; urgency=low * Initial release (closes: #731162) -- Andreas Tille Fri, 23 Aug 2013 09:23:02 +0200 debian/compat0000644000000000000000000000000212221645510010362 0ustar 9 debian/docs0000644000000000000000000000002312214301143010023 0ustar debian/README.test