debian/0000755000000000000000000000000012146365167007201 5ustar debian/watch0000644000000000000000000000025711744005771010231 0ustar version=3 opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \ http://www.bioconductor.org/packages/release/bioc/html/HilbertVis.html \ .*/HilbertVis_([\d\.]+)\.tar\.gz debian/rules0000755000000000000000000000011511733174217010251 0ustar #!/usr/bin/make -f debRreposname=bioc include /usr/share/R/debian/r-cran.mk debian/copyright0000644000000000000000000000240012135746771011132 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: HilbertVis Upstream-Contact: Simon Anders Source: http://www.bioconductor.org/packages/release/bioc/src/contrib/HilbertVis_1.18.0.tar.gz Files: * Copyright: 2009-2012 Simon Anders ; European Bioinformatics Institute (EBI) License: GPL3+ Files: debian/* Copyright: 2009 Steffen Moeller , 2009-2012 Andreas Tille License: GPL3+ License: GPL3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On a Debian system, the GNU GPL license is distributed in the file ‘/usr/share/common-licenses/GPL’. debian/upstream0000644000000000000000000000132611736663042010763 0ustar Archive: Bioconductor Contact: Simon Anders Gallery: http://www.ebi.ac.uk/huber-srv/hilbert/gallery.html Homepage: http://www.ebi.ac.uk/huber-srv/hilbert Name: HilbertVis Reference: Title: Visualization of genomic data with the Hilbert curve Author: Simon Anders volume: 25 number: 10 pages: 1231-1235 Year: 2009 Journal: Bioinformatics DOI: 10.1093/bioinformatics/btp152 PMID: 19297348 URL: http://bioinformatics.oxfordjournals.org/content/25/10/1231.abstract eprint: http://bioinformatics.oxfordjournals.org/content/25/10/1231.full.pdf+html Watch: | version=3 http://www.bioconductor.org/packages/release/bioc/html/HilbertVis.html \ ../src/contrib/HilbertVis_([\d\.]+)\.tar\.gz debian/docs0000644000000000000000000000002311733176667010055 0ustar debian/README.test debian/source/0000755000000000000000000000000012135751331010467 5ustar debian/source/format0000644000000000000000000000001411470450022011667 0ustar 3.0 (quilt) debian/README.test0000644000000000000000000000044111733175340011027 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(HilbertVis)’ in order to confirm its integrity. debian/compat0000644000000000000000000000000212135747517010400 0ustar 9 debian/control0000644000000000000000000000251012135751015010567 0ustar Source: r-bioc-hilbertvis Maintainer: Debian-Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Section: math Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev (>= 2.14.2~20120222), r-cran-lattice Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-hilbertvis/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hilbertvis/trunk/ Homepage: http://www.ebi.ac.uk/huber-srv/hilbert Package: r-bioc-hilbertvis Architecture: any Depends: ${shlibs:Depends}, ${R:Depends}, r-cran-lattice Description: GNU R package to visualise long vector data This tool allows one to display very long data vectors in a space-efficient manner, by organising it along a 2D Hilbert curve. The user can then visually judge the large scale structure and distribution of features simultaenously with the rough shape and intensity of individual features. . In bioinformatics, a typical use case is ChIP-Chip and ChIP-Seq, or basically all the kinds of genomic data, that are conventionally displayed as quantitative track ("wiggle data") in genome browsers such as those provided by Ensembl or UCSC. debian/changelog0000644000000000000000000000460712146365167011062 0ustar r-bioc-hilbertvis (1.18.0-1build1) saucy; urgency=low * Rebuild against R 3.0.0. -- Colin Watson Mon, 20 May 2013 10:18:47 +0100 r-bioc-hilbertvis (1.18.0-1) unstable; urgency=low * Team upload. * New upstream release. * Normalised debian/control with cme. * Use Debhelper 9. * Normalised VCS URLs following Lintians standard. * Conforms to Policy 3.9.4. -- Charles Plessy Wed, 24 Apr 2013 21:37:36 +0900 r-bioc-hilbertvis (1.14.0-1) unstable; urgency=low [ Charles Plessy ] * Track stable version (debian/watch). * Corrected VCS URLs (debian/control). [ Andreas Tille ] * New upstream version * debian/watch: Make sure source will be really downloaded -- Andreas Tille Thu, 19 Apr 2012 14:42:44 +0200 r-bioc-hilbertvis (1.13.1-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) * Debhelper 8 (control+compat) * debian/rules: - Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk - Code is trivial enough to remove licensing comment * debian/copyright: Rewritten to match DEP5 and verified using cme fix dpkg-copyright * debian/upstream: Used citation("HilbertVis") to get citation information * mv debian/README.Debian debian/README.test because it is about testing (and install via debian/docs) -- Andreas Tille Fri, 23 Mar 2012 22:18:23 +0100 r-bioc-hilbertvis (1.9.0-1) unstable; urgency=low * New upstream version * debian/copyright: Fix download location * Added watch file * Debhelper 7 * debian/control: - Standards-Version: 3.9.1 (no changes needed) - Depends: ${R:Depends} * debian/rules: - Create substvars file - Fix cut-n-pasto in header information * Source format 3.0 (quilt) * Added README.Debian how this package can be tested -- Andreas Tille Tue, 16 Nov 2010 09:58:10 +0100 r-bioc-hilbertvis (1.5.0-2) unstable; urgency=low * Fixing missing dependency on lattice. (Closes: #557031) -- Steffen Moeller Thu, 19 Nov 2009 12:29:05 +0100 r-bioc-hilbertvis (1.5.0-1) unstable; urgency=low * Initial release (Closes: #555921). -- Steffen Moeller Thu, 12 Nov 2009 15:15:08 +0100