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PWMEnrich/build/ 0000755 0001751 0001751 00000000000 14614351234 014470 5 ustar 00biocbuild biocbuild PWMEnrich/build/vignette.rds 0000644 0001751 0001751 00000000357 14614351234 017034 0 ustar 00biocbuild biocbuild uP
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PWMEnrich/DESCRIPTION 0000644 0001751 0001751 00000002717 14614351235 015107 0 ustar 00biocbuild biocbuild Package: PWMEnrich
Type: Package
Title: PWM enrichment analysis
Version: 4.40.0
Date: 2015-09-25
Author: Robert Stojnic, Diego Diez
Maintainer: Diego Diez
LazyLoad: yes
Description: A toolkit of high-level functions for DNA motif scanning
and enrichment analysis built upon Biostrings. The main
functionality is PWM enrichment analysis of already known PWMs
(e.g. from databases such as MotifDb), but the package also
implements high-level functions for PWM scanning and
visualisation. The package does not perform "de novo" motif
discovery, but is instead focused on using motifs that are
either experimentally derived or computationally constructed by
other tools.
License: LGPL (>= 2)
Depends: R (>= 3.5.0), methods, BiocGenerics, Biostrings
Imports: grid, seqLogo, gdata, evd, S4Vectors
Suggests: MotifDb, BSgenome, BSgenome.Dmelanogaster.UCSC.dm3,
PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel,
PWMEnrich.Hsapiens.background, PWMEnrich.Mmusculus.background,
BiocStyle, knitr
biocViews: MotifAnnotation, SequenceMatching, Software
VignetteBuilder: knitr
RoxygenNote: 7.1.1
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/PWMEnrich
git_branch: RELEASE_3_19
git_last_commit: fc31a1e
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-04-30
NeedsCompilation: no
Packaged: 2024-05-01 05:26:53 UTC; biocbuild
PWMEnrich/inst/ 0000755 0001751 0001751 00000000000 14614351234 014346 5 ustar 00biocbuild biocbuild PWMEnrich/inst/doc/ 0000755 0001751 0001751 00000000000 14614351234 015113 5 ustar 00biocbuild biocbuild PWMEnrich/inst/doc/PWMEnrich.pdf 0000644 0001751 0001751 00005521216 14614351234 017416 0 ustar 00biocbuild biocbuild %PDF-1.5
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