bibtex/0000755000176200001440000000000014364431402011530 5ustar liggesusersbibtex/NAMESPACE0000644000176200001440000000051614364425721012760 0ustar liggesusers# Generated by roxygen2: do not edit by hand export(do_read_bib) export(read.bib) export(write.bib) importFrom(tools,deparseLatex) importFrom(tools,latexToUtf8) importFrom(tools,parseLatex) importFrom(utils,bibentry) importFrom(utils,citation) importFrom(utils,installed.packages) importFrom(utils,person) importFrom(utils,toBibtex) bibtex/README.md0000644000176200001440000000344714313223326013015 0ustar liggesusers# bibtex [![CRAN](https://www.r-pkg.org/badges/version/bibtex)](https://CRAN.R-project.org/package=bibtex) [![R-CMD-check](https://github.com/ropensci/bibtex/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/bibtex/actions/workflows/R-CMD-check.yaml) [![Coverage](https://codecov.io/github/ropensci/bibtex/coverage.svg?branch=master)](https://codecov.io/gh/ropensci/bibtex/branch/master) [![Downloads](https://cranlogs.r-pkg.org/badges/bibtex)](https://cran.r-project.org/package=bibtex) [![Total Downloads](https://cranlogs.r-pkg.org/badges/grand-total/bibtex?color=blue)](https://cran.r-project.org/package=bibtex) ## Installation You can install bibtex from [CRAN](https://cran.r-project.org) with: ```r install.packages("bibtex") ``` You can install bibtex from GitHub with: ```r if(!requireNamespace("remotes", quietly = TRUE)) { install.packages("remotes") } remotes::install_github("ropensci/bibtex") ``` ### Acknowledgements Without the work of [Romain François](https://github.com/romainfrancois), `bibtex` likely wouldn't exist. Romain was the principal developer of `bibtex` up until 2020 when he was unable to continue supporting the package due to time commitments. His work will continue on thanks in part to his willingness to donate it to rOpenSci. ### Meta - Please [report any issues, bugs or feature requests](https://github.com/ropensci/bibtex/issues). - License: GPL (>= 2) - Get citation information for `bibtex` in R with `citation("bibtex")` - Please note that this package is released with a [Contributor Code of Conduct](https://ropensci.org/code-of-conduct/). By contributing to this project, you agree to abide by its terms. [![ropensci](https://ropensci.org//public_images/github_footer.png)](https://ropensci.org/) bibtex/man/0000755000176200001440000000000014313223106012275 5ustar liggesusersbibtex/man/read.bib.Rd0000644000176200001440000000313314313223106014232 0ustar liggesusers% Generated by roxygen2: do not edit by hand % Please edit documentation in R/bibtex.R \name{read.bib} \alias{read.bib} \title{bibtex parser} \usage{ read.bib( file = findBibFile(package), package = "bibtex", encoding = "unknown", header, footer ) } \arguments{ \item{file}{bib file to parse. By default, the file \file{REFERENCES.bib} in the root directory of the package given by the \code{package} argument is used.} \item{package}{package from which we want to read the bibliography. Only used if \code{file} is unspecified. Core R packages (base, datasets, graphics, grDevices, methods, stats, stats4, tools and utils) are treated specially: this package contains bibtex entries for these packages.} \item{encoding}{encoding} \item{header}{DEPRECATED.} \item{footer}{DEPRECATED} } \value{ An object of class \code{"bibentry"}, similar to those obtained by the \code{\link[utils]{bibentry}} function. } \description{ Parser for bibliography databases written in the bib format. } \examples{ ## this package has a REFERENCES.bib file bib <- read.bib(package = "bibtex") ## bibtex collects bibtex entries for R base packages base.bib <- read.bib(package = "base") \dontshow{ bib <- read.bib(package = "base") bib <- read.bib(package = "datasets") bib <- read.bib(package = "graphics") bib <- read.bib(package = "grDevices") bib <- read.bib(package = "methods") bib <- read.bib(package = "stats") bib <- read.bib(package = "stats4") bib <- read.bib(package = "tools") bib <- read.bib(package = "utils") } } \references{ Nelson H. F. Beebe. bibparse 1.04. 1999. \url{http://www.math.utah.edu/~beebe/} } bibtex/man/do_read_bib.Rd0000644000176200001440000000127414313223106015001 0ustar liggesusers% Generated by roxygen2: do not edit by hand % Please edit documentation in R/bibtex.R \name{do_read_bib} \alias{do_read_bib} \title{convenience wrapper around .External call} \usage{ do_read_bib(file, encoding = "unknown", srcfile) } \arguments{ \item{file}{file name} \item{encoding}{encoding} \item{srcfile}{Deprecated} } \description{ This is a convenience function for packages that do need to call the internal functionality of \code{\link{read.bib}} but does different processing. This is a simple wrapper around the \code{.External} code used by \code{\link{read.bib}} } \details{ The parser is greatly inspired from the \samp{bibparse} library. } \seealso{ \code{\link[utils]{bibentry}} } bibtex/man/write.bib.Rd0000644000176200001440000000242214313223106014451 0ustar liggesusers% Generated by roxygen2: do not edit by hand % Please edit documentation in R/bibtex.R \name{write.bib} \alias{write.bib} \title{Generate a Bibtex File from Package Citations} \usage{ write.bib(entry, file = "Rpackages.bib", append = FALSE, verbose = TRUE) } \arguments{ \item{entry}{a \code{\link{bibentry}} object or a character vector of package names. If \code{NULL}, then the list of all installed packages is used.} \item{file}{output Bibtex file.} \item{append}{logical. If \code{TRUE} content is appended to the file.} \item{verbose}{a logical to toggle verbosity.} } \value{ the list of Bibtex objects -- invisibly. } \description{ Generates a Bibtex file from a list of packages or all the installed packages. It is useful for adding relevant citations in Sweave documents. } \examples{ write.bib(c("bibtex", "utils", "tools"), file = "references") bibs <- read.bib("references.bib") write.bib(bibs, "references2.bib") md5 <- tools::md5sum(c("references.bib", "references2.bib")) md5[1] == md5[2] \dontshow{ unlink(c("references.bib", "references2.bib")) } } \references{ \emph{[R] Creating bibtex file of all installed packages?} Achim Zeileis. R-help mailing list. } \author{ Renaud Gaujoux, based on the function \code{Rpackages.bib} from Achim Zeileis (see \emph{References}). } bibtex/man/bibtex-package.Rd0000644000176200001440000000274714313223106015444 0ustar liggesusers% Generated by roxygen2: do not edit by hand % Please edit documentation in R/bibtex-package.R \docType{package} \name{bibtex-package} \alias{bibtex} \alias{bibtex-package} \title{bibtex: Bibtex Parser} \description{ Utility to parse a bibtex file. } \seealso{ Useful links: \itemize{ \item \url{https://github.com/ropensci/bibtex} \item \url{https://docs.ropensci.org/bibtex/} \item Report bugs at \url{https://github.com/ropensci/bibtex/issues} } } \author{ \strong{Maintainer}: James Joseph Balamuta \email{balamut2@illinois.edu} (\href{https://orcid.org/0000-0003-2826-8458}{ORCID}) [contributor] Authors: \itemize{ \item Romain Francois \email{romain@purrple.cat} (\href{https://orcid.org/0000-0002-2444-4226}{ORCID}) (principal developer of bibtex R package) [copyright holder] \item Diego Hernangómez \email{diego.hernangomezherrero@gmail.com} (\href{https://orcid.org/0000-0001-8457-4658}{ORCID}) } Other contributors: \itemize{ \item Scott Chamberlain \email{myrmecocystus@gmail.com} (\href{https://orcid.org/0000-0003-1444-9135}{ORCID}) [contributor] \item Kurt Hornik \email{Kurt.Hornik@R-project.org} (\href{https://orcid.org/0000-0003-4198-9911}{ORCID}) [contributor] \item Brian Ripley \email{ripley@stats.ox.ac.uk} (compilation fixes) [contributor] \item Michael Koohafkan \email{michael.koohafkan@gmail.com} [contributor] \item Mathew W. McLean \email{mathew.w.mclean@gmail.com} (\href{https://orcid.org/0000-0002-7891-9645}{ORCID}) [contributor] } } \keyword{internal} bibtex/DESCRIPTION0000644000176200001440000000524014364431402013237 0ustar liggesusersPackage: bibtex Version: 0.5.1 Title: Bibtex Parser Authors@R: c( person(given = "Romain", family = "Francois", role = c("aut", "cph"), email = "romain@purrple.cat", comment = c(ORCID = "0000-0002-2444-4226", "principal developer of bibtex R package")), person(given = c("James", "Joseph"), family = "Balamuta", role = c("ctb", "cre"), email = "balamut2@illinois.edu", comment = c(ORCID = "0000-0003-2826-8458")), person(given = "Diego", family = "Hernangómez", role = c("aut"), email = "diego.hernangomezherrero@gmail.com", comment = c(ORCID = "0000-0001-8457-4658")), person(given = "Scott", family = "Chamberlain", role = c("ctb"), email = "myrmecocystus@gmail.com", comment = c(ORCID = "0000-0003-1444-9135")), person(given = "Kurt", family = "Hornik", role = "ctb", email = "Kurt.Hornik@R-project.org", comment = c(ORCID = "0000-0003-4198-9911")), person(given = "Brian", family = "Ripley", role = "ctb", email = "ripley@stats.ox.ac.uk", comment = "compilation fixes"), person(given = "Michael", family = "Koohafkan", role = "ctb", email = "michael.koohafkan@gmail.com"), person(given = c("Mathew", "W."), family = "McLean", role = "ctb", email = "mathew.w.mclean@gmail.com", comment = c(ORCID = "0000-0002-7891-9645") ) ) Description: Utility to parse a bibtex file. BugReports: https://github.com/ropensci/bibtex/issues URL: https://github.com/ropensci/bibtex, https://docs.ropensci.org/bibtex/ License: GPL (>= 2) Depends: R (>= 3.0.2) Imports: backports (>= 1.4.0), utils Suggests: testthat (>= 3.0.0) LazyLoad: yes Encoding: UTF-8 RoxygenNote: 7.2.3 Config/testthat/edition: 3 NeedsCompilation: no Packaged: 2023-01-26 07:29:30 UTC; ronin Author: Romain Francois [aut, cph] (, principal developer of bibtex R package), James Joseph Balamuta [ctb, cre] (), Diego Hernangómez [aut] (), Scott Chamberlain [ctb] (), Kurt Hornik [ctb] (), Brian Ripley [ctb] (compilation fixes), Michael Koohafkan [ctb], Mathew W. McLean [ctb] () Maintainer: James Joseph Balamuta Repository: CRAN Date/Publication: 2023-01-26 08:00:02 UTC bibtex/tests/0000755000176200001440000000000014313223106012664 5ustar liggesusersbibtex/tests/testthat/0000755000176200001440000000000014364431402014532 5ustar liggesusersbibtex/tests/testthat/test-preamble.R0000644000176200001440000000056514313223106017421 0ustar liggesuserstest_that("Preamble from file", { file <- system.file("bib/xampl_preamble.bib", package = "bibtex") out <- read.bib(file) class(out) <- c("citation", "bibentry") expect_snapshot_output(out) }) test_that("Preamble via params", { file <- system.file("bib/xampl_single.bib", package = "bibtex") out <- read.bib(file) expect_snapshot_output(toBibtex(out)) }) bibtex/tests/testthat/test-full_xampl.R0000644000176200001440000000054314313223106017771 0ustar liggesuserstest_that("Full xampl on string", { file <- system.file("bib/xampl_mod.bib", package = "bibtex") out <- read.bib(file) expect_snapshot(names(out)) expect_snapshot_output(out) }) test_that("Full xampl on bibtex", { file <- system.file("bib/xampl_mod.bib", package = "bibtex") out <- read.bib(file) expect_snapshot_output(toBibtex(out)) }) bibtex/tests/testthat/test-bibtex.R0000644000176200001440000000205514313223106017103 0ustar liggesuserstest_that("arrange.single.author does not add extra trailing space in given names (#7)", { given <- bibtex:::ArrangeSingleAuthor("Jean-Claude {Van Damme}")$given expect_false(grepl("[[:space:]]$", given)) }) test_that("read.bib Ignores entry but does not stop with invalid author/editor (#12)", { f <- file.path(system.file("bib", "badFormat.bib", package = "bibtex")) bib <- read.bib(f) expect_true(length(bib) == 1L) }) test_that("read.bib can use ? in key (#9)", { tmp <- tempfile(fileext = ".bib") entry <- "@Misc{key?,\n author = \"Smith, Bob\",\n title = \"The Title\",\n year = 2012, \n}" writeLines(entry, tmp) out <- read.bib(tmp) expect_equal(names(out), "key?") }) test_that("make.bib.entry can generate year from date (#15)", { tmp <- tempfile(fileext = ".bib") entry <- "@Article{newspaper, author = {Author Smith}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, }" writeLines(entry, tmp) out <- read.bib(tmp) expect_equal(out$year, "2016") }) bibtex/tests/testthat/test-examples.R0000644000176200001440000000370314313223106017445 0ustar liggesuserstest_that("Write", { tmp <- file.path(tempdir(), "references") suppressWarnings(write.bib(c("bibtex", "utils", "tools"), file = tmp)) #> Results written to file 'references.bib' expect_error(read.bib(tmp)) #> Results written to file 'references.bib' bibs <- read.bib(paste0(tmp, ".bib")) tmp2 <- tempfile(fileext = ".bib") write.bib(bibs, tmp2) md5 <- tools::md5sum(c(paste0(tmp, ".bib"), tmp2)) md5 <- unname(md5) expect_equal(md5[1], md5[2]) }) test_that("Read bibtex", { ## this package has a REFERENCES.bib file bib <- read.bib(package = "bibtex") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read base", { bib <- read.bib(package = "base") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read datasets", { bib <- read.bib(package = "datasets") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read graphics", { bib <- read.bib(package = "graphics") skip_on_os("windows") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read grDevices", { bib <- read.bib(package = "grDevices") skip_on_os("windows") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read methods", { bib <- read.bib(package = "methods") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read stats", { bib <- read.bib(package = "stats") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read stats4", { bib <- read.bib(package = "stats4") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read tools", { bib <- read.bib(package = "tools") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) test_that("Read utils", { bib <- read.bib(package = "utils") expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) bibtex/tests/testthat/test-write.R0000644000176200001440000000244514313223106016763 0ustar liggesuserstest_that("Test errors", { tmp <- tempfile(fileext = ".bib") expect_error(write.bib(NULL, file = tmp)) expect_message( write.bib(as.character(NULL), file = tmp), "Empty package list: nothing to be done" ) }) test_that("Test package citation", { skip_if_not_installed("testthat") skip_if_not_installed("devtools") tmp <- tempfile(fileext = ".bib") write.bib(c("testthat", "devtools"), file = tmp) l <- read.bib(tmp) expect_gte(length(l), 2) }) test_that("Test append", { f <- citation("base")[1] f$key <- "base" tmp <- tempfile(fileext = ".bib") write.bib(f, file = tmp) l <- read.bib(tmp) expect_length(l, 1) # Add one citation mock <- bibentry("Misc", title = "Mock citation", author = "Mock author", key = "mock" ) write.bib(mock, file = tmp, append = TRUE) l2 <- read.bib(tmp) expect_length(l2, 2) # Overwrite expect_silent(write.bib(mock, file = tmp, append = FALSE, verbose = FALSE)) l3 <- read.bib(tmp) expect_length(l3, 1) expect_equal(l3$title, mock$title) expect_equal(l3$author, mock$author) expect_equal(l3$key, mock$key) }) test_that("NULL vector", { file <- tempfile(fileext = ".bib") expect_message( write.bib(as.character(NULL), file = file), "Empty package list: nothing to be done." ) }) bibtex/tests/testthat/test-read.R0000644000176200001440000000116114313223106016536 0ustar liggesuserstest_that("Read errors 1", { x <- 1 expect_error(read.bib(x)) }) test_that("Not find bib on package", { expect_error(findBibFile("mockpackage")) }) test_that("Test entry with non standard fields", { tmp <- tempfile(fileext = ".bib") entry <- '@Article{newspaper, author = {Van Damme, Jean-Claude}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, hyphen-field = "This one", under_field = "This one", double:field = "This one", }' writeLines(entry, tmp) bib <- read.bib(tmp) expect_snapshot_output(bib) expect_snapshot_output(toBibtex(bib)) }) bibtex/tests/testthat/test-do_read_bib.R0000644000176200001440000000167414313223106020045 0ustar liggesuserstest_that("Do read bib", { file <- system.file("bib/xampl_single.bib", package = "bibtex") # Mock RefManageR behaviour encoding <- "UTF-8" srcfile <- switch(encoding, unknown = srcfile(file), srcfile(file, encoding = encoding) ) f <- do_read_bib(file, encoding = "UTF-8", srcfile = srcfile) expect_snapshot_output(f[[1]]) }) test_that("Do read bib with non standard entries", { tmp <- tempfile(fileext = ".bib") entry <- "@Website{newspaper, author = {Van Damme, Jean-Claude}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, }" writeLines(entry, tmp) out <- do_read_bib(tmp, encoding = "UTF-8", srcfile = tmp) expect_snapshot_output(out[[1]]) }) test_that("do read with several entries", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- do_read_bib(bib, encoding = "UTF-8", srcfile = bib) expect_snapshot_output(lapply(out, print)) }) bibtex/tests/testthat/test-previous-issues.R0000644000176200001440000000652514313223106021021 0ustar liggesuserstest_that("Error message for invalid .bib files to read.bib #3", { bib <- system.file("bib/badFormat.bib", package = "bibtex") message <- expect_message(read.bib(bib)) expect_snapshot_output(message$message) }) test_that("arrange.authors when family names have white space #6", { issuefile <- system.file("bib/issue6.bib", package = "bibtex") out <- read.bib(issuefile) aut <- out["newspaper"]$author expect_s3_class(aut, "person", exact = TRUE) expect_identical(aut, person(given = "Jean-Claude", family = "Van Damme")) }) # Rewriting test already included # Housekeeping and for keep track on the same file test_that("(new) Extra trailing space in ... #7", { issuefile <- system.file("bib/issue7.bib", package = "bibtex") out <- read.bib(issuefile) aut <- out["newspaper"]$author expect_s3_class(aut, "person", exact = TRUE) expect_identical(aut, person(given = "Jean-Claude", family = "Van Damme")) cat(aut$family) }) test_that("read.bib can use ? in key #9", { issuefile <- system.file("bib/issue9.bib", package = "bibtex") out <- read.bib(issuefile) expect_snapshot_output(toBibtex(out)) # Write tmp2 <- file.path(tempdir(), "issue9.bib") expect_message(write.bib(out, tmp2, append = FALSE, verbose = TRUE)) expect_snapshot_file(tmp2) # Re-read out2 <- read.bib(tmp2) expect_identical(out2$key, "key?") expect_identical(names(out2), "key?") }) test_that("read.bib Ignores entry but does not stop with invalid author/editor #12", { f <- file.path(system.file("bib", "badFormat.bib", package = "bibtex")) bib <- read.bib(f) expect_true(length(bib) == 1L) }) test_that("make.bib.entry can generate year from date #15", { issuefile <- system.file("bib/issue15.bib", package = "bibtex") out <- read.bib(issuefile) expect_equal(out$year, "2016") expect_snapshot_output(toBibtex(out)) }) test_that("windows and encoding #17", { issuefile <- system.file("bib/issue17.bib", package = "bibtex") out <- read.bib(issuefile) auths <- out$author expect_s3_class(auths, "person", exact = TRUE) expect_identical(auths[[1]]$family, "Hermès International S.A.") expect_identical(auths[[2]]$family, "Katzfuß") }) test_that("List of author names joined by AND cannot be parsed #18", { issuefile <- system.file("bib/issue18.bib", package = "bibtex") out <- read.bib(issuefile) auths <- out$author expect_length(auths, 5) expect_snapshot_output(auths$given) expect_snapshot_output(auths$family) expect_snapshot_output(toBibtex(out)) }) test_that("caught segfault read.bib() - macOS 10.14.6 #23", { issuefile <- system.file("bib/issue23.bib", package = "bibtex") out <- read.bib(issuefile) expect_snapshot_output(toBibtex(out)) }) test_that("Parse single entry from string #35", { # This test is about not reading from a file, but from a string my_ref <- " @book{McElreath_2020, edition={2}, title={Statistical Rethinking: A Bayesian Course with Examples in R and Stan}, ISBN={978-0-429-02960-8}, url={https://www.taylorfrancis.com/books/9780429642319}, DOI={10.1201/9780429029608}, publisher={Chapman and Hall/CRC}, author={McElreath, Richard}, year={2020}, month={Mar} }" # Need to check by writing first tmp1 <- tempfile(fileext = ".bib") writeLines(my_ref, tmp1) # And reading from the temp file out <- read.bib(tmp1) expect_snapshot_output(toBibtex(out)) }) bibtex/tests/testthat/test-standard-entries.R0000644000176200001440000000644614313223106021105 0ustar liggesusers# https://ctan.javinator9889.com/biblio/bibtex/base/btxdoc.pdf test_that("Test article-full", { bib <- system.file("bib/xampl_message.bib", package = "bibtex") s <- expect_message(read.bib(bib)) exp_mes <- "ignoring entry 'conference-full' (line 43) because :\n\t'bibtype' has to be one of Article, Book, Booklet, InBook, InCollection, InProceedings, Manual, MastersThesis, Misc, PhdThesis, Proceedings, TechReport, Unpublished\n\n" expect_equal(s$message, exp_mes) out <- read.bib(bib) expect_length(out, 3) entry <- out["article-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test book-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) expect_length(out, 13) entry <- out["book-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test booklet-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["booklet-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test conference-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) expect_warning(out["conference-full"]) entry <- suppressWarnings(out["conference-full"]) expect_length(entry, 0) }) test_that("Test inbook-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["inbook-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test incollection-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["incollection-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test inproceedings-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["inproceedings-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test manual-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["manual-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test mastersthesis-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["mastersthesis-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test misc-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["misc-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test phdthesis-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["phdthesis-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test proceedings-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["proceedings-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test techreport-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["techreport-full"] expect_snapshot_output(toBibtex(entry)) }) test_that("Test unpublished-full", { bib <- system.file("bib/xampl_standard.bib", package = "bibtex") out <- read.bib(bib) entry <- out["unpublished-full"] expect_snapshot_output(toBibtex(entry)) }) bibtex/tests/testthat/_snaps/0000755000176200001440000000000014313223106016007 5ustar liggesusersbibtex/tests/testthat/_snaps/authors.md0000644000176200001440000000271414313223106020022 0ustar liggesusers# Smith, Jr., John and Mary {Tyler Moore} structure(list(list(given = "John", family = c("Smith", "Jr." ), role = NULL, email = NULL, comment = NULL), list(given = "Mary", family = "Tyler Moore", role = NULL, email = NULL, comment = NULL)), class = "person") # Smith, Jr., John and {MATLAB, Inc.} structure(list(list(given = "John", family = c("Smith", "Jr." ), role = NULL, email = NULL, comment = NULL), list(given = NULL, family = "MATLAB, Inc.", role = NULL, email = NULL, comment = NULL)), class = "person") # Smith, John Paul and {MATLAB, Inc.} structure(list(list(given = c("John", "Paul"), family = "Smith", role = NULL, email = NULL, comment = NULL), list(given = NULL, family = "MATLAB, Inc.", role = NULL, email = NULL, comment = NULL)), class = "person") # {de Gama}, Vasco structure(list(list(given = "Vasco", family = c("de", "Gama"), role = NULL, email = NULL, comment = NULL)), class = "person") # Mark von Bommel structure(list(list(given = "Mark", family = c("von", "Bommel" ), role = NULL, email = NULL, comment = NULL)), class = "person") # de la Soul, Posdnous structure(list(list(given = "Posdnous", family = c("de la", "Soul" ), role = NULL, email = NULL, comment = NULL)), class = "person") # des White, Jr., Walter structure(list(list(given = "Walter", family = c("des", "White", "Jr."), role = NULL, email = NULL, comment = NULL)), class = "person") bibtex/tests/testthat/_snaps/do_read_bib.md0000644000176200001440000006616714313223106020562 0ustar liggesusers# Do read bib author "L[eslie] A. Aamport" title "The Gnats and Gnus Document Preparation System" journal "\\mbox{G-Animal's} Journal" year "1986" volume "41" number "7" pages "73+" month "jul" note "This is a full ARTICLE entry" attr(,"entry") [1] "ARTICLE" attr(,"key") [1] "article-full" # Do read bib with non standard entries author title date "Van Damme, Jean-Claude" "Article title" "2016-12-21" journal "Newspaper name" attr(,"entry") [1] "Website" attr(,"key") [1] "newspaper" # do read with several entries author "L[eslie] A. Aamport" title "The Gnats and Gnus Document Preparation System" journal "\\mbox{G-Animal's} Journal" year "1986" volume "41" number "7" pages "73+" month "jul" note "This is a full ARTICLE entry" attr(,"entry") [1] "ARTICLE" attr(,"key") [1] "article-full" author title "Donald E. Knuth" "Seminumerical Algorithms" volume series "2" "The Art of Computer Programming" publisher address "Addison-Wesley" "Reading, Massachusetts" edition month "Second" "10~jan" year note "{\\noopsort{1973c}}1981" "This is a full BOOK entry" attr(,"entry") [1] "BOOK" attr(,"key") [1] "book-full" author title "Jill C. Knvth" "The Programming of Computer Art" howpublished address "Vernier Art Center" "Stanford, California" month year "feb" "1988" note "This is a full BOOKLET entry" attr(,"entry") [1] "BOOKLET" attr(,"key") [1] "booklet-full" author title "Donald E. Knuth" "Fundamental Algorithms" volume series "1" "The Art of Computer Programming" publisher address "Addison-Wesley" "Reading, Massachusetts" edition month "Second" "10~jan" year type "{\\noopsort{1973b}}1973" "Section" chapter pages "1.2" "10--119" note "This is a full INBOOK entry" attr(,"entry") [1] "INBOOK" attr(,"key") [1] "inbook-full" author "Daniel D. Lincoll" title "Semigroups of Recurrences" editor "David J. Lipcoll and D. H. Lawrie and A. H. Sameh" booktitle "High Speed Computer and Algorithm Organization" number "23" series "Fast Computers" chapter "3" type "Part" pages "179--183" publisher "Academic Press" address "New York" edition "Third" month "sep" year "1977" note "This is a full INCOLLECTION entry" attr(,"entry") [1] "INCOLLECTION" attr(,"key") [1] "incollection-full" author "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis" title "On Notions of Information Transfer in {VLSI} Circuits" editor "Wizard V. Oz and Mihalis Yannakakis" booktitle "Proc. Fifteenth Annual ACM" number "17" series "All ACM Conferences" pages "133--139" month "mar" year "1983" address "Boston" organization "ACM" publisher "Academic Press" note "This is a full INPROCEDINGS entry" attr(,"entry") [1] "INPROCEEDINGS" attr(,"key") [1] "inproceedings-full" author title "Larry Manmaker" "The Definitive Computer Manual" organization address "Chips-R-Us" "Silicon Valley" edition month "Silver" "apr-may" year note "1986" "This is a full MANUAL entry" attr(,"entry") [1] "MANUAL" attr(,"key") [1] "manual-full" author title "{\\'{E}}douard Masterly" "Mastering Thesis Writing" school type "Stanford University" "Master's project" address month "English Department" "jun-aug" year note "1988" "This is a full MASTERSTHESIS entry" attr(,"entry") [1] "MASTERSTHESIS" attr(,"key") [1] "mastersthesis-full" author "Joe-Bob Missilany" title "Handing out random pamphlets in airports" howpublished "Handed out at O'Hare" month "oct" year "1984" note "This is a full MISC entry" attr(,"entry") [1] "MISC" attr(,"key") [1] "misc-full" author "F. Phidias Phony-Baloney" title "Fighting Fire with Fire: Festooning {F}rench Phrases" school "Fanstord University" type "{PhD} Dissertation" address "Department of French" month "jun-aug" year "1988" note "This is a full PHDTHESIS entry" attr(,"entry") [1] "PHDTHESIS" attr(,"key") [1] "phdthesis-full" editor title "Wizard V. Oz and Mihalis Yannakakis" "Proc. Fifteenth AnnualSTOC" number series "17" "All ACM Conferences" month year "mar" "1983" address organization "Boston" "ACM" publisher note "Academic Press" "This is a full PROCEEDINGS entry" attr(,"entry") [1] "PROCEEDINGS" attr(,"key") [1] "proceedings-full" author "Tom T{\\'{e}}rrific" title "An {$O(n \\log n / \\! \\log\\log n)$} Sorting Algorithm" institution "Fanstord University" type "Wishful Research Result" number "7" address "Computer Science Department, Fanstord, California" month "oct" year "1988" note "This is a full TECHREPORT entry" attr(,"entry") [1] "TECHREPORT" attr(,"key") [1] "techreport-full" author "Ulrich {\\\"{U}}nderwood and Ned {\\~N}et and Paul {\\={P}}ot" title "Lower Bounds for Wishful Research Results" month "nov, dec" year "1988" note "Talk at Fanstord University (this is a full UNPUBLISHED entry)" attr(,"entry") [1] "UNPUBLISHED" attr(,"key") [1] "unpublished-full" [[1]] author "L[eslie] A. Aamport" title "The Gnats and Gnus Document Preparation System" journal "\\mbox{G-Animal's} Journal" year "1986" volume "41" number "7" pages "73+" month "jul" note "This is a full ARTICLE entry" attr(,"entry") [1] "ARTICLE" attr(,"key") [1] "article-full" [[2]] author title "Donald E. Knuth" "Seminumerical Algorithms" volume series "2" "The Art of Computer Programming" publisher address "Addison-Wesley" "Reading, Massachusetts" edition month "Second" "10~jan" year note "{\\noopsort{1973c}}1981" "This is a full BOOK entry" attr(,"entry") [1] "BOOK" attr(,"key") [1] "book-full" [[3]] author title "Jill C. Knvth" "The Programming of Computer Art" howpublished address "Vernier Art Center" "Stanford, California" month year "feb" "1988" note "This is a full BOOKLET entry" attr(,"entry") [1] "BOOKLET" attr(,"key") [1] "booklet-full" [[4]] author title "Donald E. Knuth" "Fundamental Algorithms" volume series "1" "The Art of Computer Programming" publisher address "Addison-Wesley" "Reading, Massachusetts" edition month "Second" "10~jan" year type "{\\noopsort{1973b}}1973" "Section" chapter pages "1.2" "10--119" note "This is a full INBOOK entry" attr(,"entry") [1] "INBOOK" attr(,"key") [1] "inbook-full" [[5]] author "Daniel D. Lincoll" title "Semigroups of Recurrences" editor "David J. Lipcoll and D. H. Lawrie and A. H. Sameh" booktitle "High Speed Computer and Algorithm Organization" number "23" series "Fast Computers" chapter "3" type "Part" pages "179--183" publisher "Academic Press" address "New York" edition "Third" month "sep" year "1977" note "This is a full INCOLLECTION entry" attr(,"entry") [1] "INCOLLECTION" attr(,"key") [1] "incollection-full" [[6]] author "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis" title "On Notions of Information Transfer in {VLSI} Circuits" editor "Wizard V. Oz and Mihalis Yannakakis" booktitle "Proc. Fifteenth Annual ACM" number "17" series "All ACM Conferences" pages "133--139" month "mar" year "1983" address "Boston" organization "ACM" publisher "Academic Press" note "This is a full INPROCEDINGS entry" attr(,"entry") [1] "INPROCEEDINGS" attr(,"key") [1] "inproceedings-full" [[7]] author title "Larry Manmaker" "The Definitive Computer Manual" organization address "Chips-R-Us" "Silicon Valley" edition month "Silver" "apr-may" year note "1986" "This is a full MANUAL entry" attr(,"entry") [1] "MANUAL" attr(,"key") [1] "manual-full" [[8]] author title "{\\'{E}}douard Masterly" "Mastering Thesis Writing" school type "Stanford University" "Master's project" address month "English Department" "jun-aug" year note "1988" "This is a full MASTERSTHESIS entry" attr(,"entry") [1] "MASTERSTHESIS" attr(,"key") [1] "mastersthesis-full" [[9]] author "Joe-Bob Missilany" title "Handing out random pamphlets in airports" howpublished "Handed out at O'Hare" month "oct" year "1984" note "This is a full MISC entry" attr(,"entry") [1] "MISC" attr(,"key") [1] "misc-full" [[10]] author "F. Phidias Phony-Baloney" title "Fighting Fire with Fire: Festooning {F}rench Phrases" school "Fanstord University" type "{PhD} Dissertation" address "Department of French" month "jun-aug" year "1988" note "This is a full PHDTHESIS entry" attr(,"entry") [1] "PHDTHESIS" attr(,"key") [1] "phdthesis-full" [[11]] editor title "Wizard V. Oz and Mihalis Yannakakis" "Proc. Fifteenth AnnualSTOC" number series "17" "All ACM Conferences" month year "mar" "1983" address organization "Boston" "ACM" publisher note "Academic Press" "This is a full PROCEEDINGS entry" attr(,"entry") [1] "PROCEEDINGS" attr(,"key") [1] "proceedings-full" [[12]] author "Tom T{\\'{e}}rrific" title "An {$O(n \\log n / \\! \\log\\log n)$} Sorting Algorithm" institution "Fanstord University" type "Wishful Research Result" number "7" address "Computer Science Department, Fanstord, California" month "oct" year "1988" note "This is a full TECHREPORT entry" attr(,"entry") [1] "TECHREPORT" attr(,"key") [1] "techreport-full" [[13]] author "Ulrich {\\\"{U}}nderwood and Ned {\\~N}et and Paul {\\={P}}ot" title "Lower Bounds for Wishful Research Results" month "nov, dec" year "1988" note "Talk at Fanstord University (this is a full UNPUBLISHED entry)" attr(,"entry") [1] "UNPUBLISHED" attr(,"key") [1] "unpublished-full" bibtex/tests/testthat/_snaps/previous-issues/0000755000176200001440000000000014364431402021202 5ustar liggesusersbibtex/tests/testthat/_snaps/previous-issues/issue9.bib0000644000176200001440000000011614313223106023071 0ustar liggesusers@Misc{key?, author = {Bob Smith}, title = {The Title}, year = {2012}, } bibtex/tests/testthat/_snaps/previous-issues.md0000644000176200001440000000441314313223106021520 0ustar liggesusers# Error message for invalid .bib files to read.bib #3 [1] "ignoring entry 'brown:1963' (line 6) because :\n\tA bibentry of bibtype 'Book' has to specify the field: title\n\n" # read.bib can use ? in key #9 @Misc{key?, author = {Bob Smith}, title = {The Title}, year = {2012}, } # make.bib.entry can generate year from date #15 @Article{newspaper, author = {Author Smith}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, year = {2016}, } # List of author names joined by AND cannot be parsed #18 [[1]] [1] "Yang-Yu" [[2]] [1] "Jose" "C." [[3]] [1] "Tomoshiro" [[4]] [1] "Mauro" [[5]] [1] "Yaniv" --- [[1]] [1] "Liu" [[2]] [1] "Nacher" [[3]] [1] "Ochiai" [[4]] [1] "Martino" [[5]] [1] "Altshuler" --- @Article{10.1371/journal.pone.0109458, author = {Yang-Yu Liu and Jose C. Nacher and Tomoshiro Ochiai and Mauro Martino and Yaniv Altshuler}, journal = {PLOS ONE}, publisher = {Public Library of Science}, title = {Prospect Theory for Online Financial Trading}, year = {2014}, month = {10}, volume = {9}, url = {https://doi.org/10.1371/journal.pone.0109458}, pages = {1-7}, number = {10}, doi = {10.1371/journal.pone.0109458}, } # caught segfault read.bib() - macOS 10.14.6 #23 @Article{Hawking1966, author = {Stephen William Hawking and Hermann Bondi}, title = {The occurrence of singularities in cosmology}, journal = {Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences}, volume = {294}, number = {1439}, pages = {511-521}, year = {1966}, doi = {10.1098/rspa.1966.0221}, } # Parse single entry from string #35 @Book{McElreath_2020, edition = {2}, title = {Statistical Rethinking: A Bayesian Course with Examples in R and Stan}, isbn = {978-0-429-02960-8}, url = {https://www.taylorfrancis.com/books/9780429642319}, doi = {10.1201/9780429029608}, publisher = {Chapman and Hall/CRC}, author = {Richard McElreath}, year = {2020}, month = {Mar}, } bibtex/tests/testthat/_snaps/preamble.md0000644000176200001440000000144414313223106020123 0ustar liggesusers# Preamble from file Aamport LA (1986). "The Gnats and Gnus Document Preparation System." _\mbox{G-Animal's} Journal_. A BibTeX entry for LaTeX users is @Article{article-minimal, author = {L[eslie] A. Aamport}, maintainer = {Xavier Albert}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = {1986}, } # Preamble via params @Article{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = {1986}, volume = {41}, number = {7}, pages = {73+}, month = {jul}, note = {This is a full ARTICLE entry}, } bibtex/tests/testthat/_snaps/examples.md0000644000176200001440000034274514313223106020166 0ustar liggesusers# Read bibtex R Development Core Team (2009). _R: A Language and Environment for Statistical Computing_. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, . --- @Manual{R, title = {R: A Language and Environment for Statistical Computing}, author = {{R Development Core Team}}, organization = {R Foundation for Statistical Computing}, address = {Vienna, Austria}, year = {2009}, note = {{ISBN} 3-900051-07-0}, url = {http://www.R-project.org}, } # Read base Chambers JM (1998). _Programming with Data_. Springer, New York. ISBN 0-387-98503-4, . Becker RA, Chambers JM, Wilks AR (1988). _The New S Language_. Chapman \& Hall, London. Chambers JM, Hastie TJ (1992). _Statistical Models in S_. Chapman \& Hall, London. ISBN 9780412830402. Dongarra JJ, Bunch JR, Moder CB, Stewart GW (1978). _LINPACK users guide_. SIAM, Philadelphia. Abramowitz M, Stegun IA (1972). _Handbook of Mathematical Functions_. Dover Publications, New York. E. A, ten others (1999). _LAPACK Users Guide_, Third edition. . Smith BT, Boyle JM, Dongarra JJ, Garbow BS, Ikebe Y, Klema V, Moler CB (1976). _Matrix Eigensystems Routines - EISPACK Guide_. Springer-Verlag. Lang DT (2001). _An Extensible Conversion Mechanism for .C() calls_. . Wilkinson JH (1965). _The Algebraic Eigenvalue Problem_. Clarendon Press, Oxford. Kernighan BW, Ritchie DM (1988). _The C Programming Language_, Second Edition edition. Prentice Hall. for Standardization IO (2004, 1988, 1997, ...). _ISO 8601. Data elements and interchange formats - Information interchange - Representation of dates and times_. . R Development Core Team (2009). _Writing R extensions_. R Foundation for Statistical Computing, Vienna, Austria. . R Development Core Team (2009). _R installation and Administration_. R Foundation for Statistical Computing, Vienna, Austria. . Lang DT (2001). "In Search of C/C++ \& FORTRAN Routines." _R News_, *1*(3), 20-23. . Goldberg D (1991). "What Every Computer Scientist Should Know about Floating-Point Arithmetic." _ACM Computing Surveys_, *23*(1). . Chambers JM, Cleveland WS, Kleiner B, Tukey P (1983). _Graphical Methods for Data Analysis_. Wadsworth. Searle SR (1982). _Matrix Algebra Useful for Statistics_. John Wiley and Sons. Venables WN, Ripley BD (2002). _Modern Applied Statistics with S. Fourth Edition_. Springer, New York. ISBN 0-387-95457-0, . Jenkins, Traub (1972). "TOMS Algorithm 419." _Comm. ACM_, 97-99. Ripley BD (1987). _Stochastic Simulation_. Wiley. Loukides Mea (2002). _Unix Power Tools_. O Reilly. Sedgewick R (1986). "A new upper bound for Shell sort." _J. Algorithms_, 159-173. Singleton RC (1969). "An efficient algorithm for sorting with minimal storage: Algorithm 347." _Communications of the ACM_, 185-187. Cody WJ (1988). "MACHAR: A subroutine to dynamically determine machine parameters." _Transactions on Mathematical Software_, 303-311. Kuhn M (????). "ASCII and Unicode quotation marks." . Huffman M (2003). "Operating Systems, Unix Shell (bash) / Windows Console (CMD.EXE)." . (2009). "Collating Sequence." . Davis M, Whistler K (2008). "Unicode Collation Algorithm." . Ahrens JH, Dieter U (1973). "Extensions of Forsythes method for random sampling from the normal distribution." _Mathematics of Computation_, 927-937. Box GEP, Muller ME (1958). "A note on the generation of normal random deviates." _Annals of Mathematical Statistics_, 610-611. De Matteis A, Pagnutti S (1993). "Long-range Correlation Analysis of the Wichmann-Hill Random Number Generator." _Statist. Comput._, 67-70. Kinderman AJ, Ramage JG (1976). "Computer generation of normal random variables." _Journal of the American Statistical Association_, 893-896. Knuth DE (1997). _The Art of Computer Programming_, volume 2, Third edition edition. Addison-Wesley Professional. . Knuth DE (1997). _The Art of Computer Programming_, volume 2, Third edition, ninth printing edition. Addison-Wesley Professional. . Marsaglia G (1997). "A random number generator for C." Discussion paper, posting on sci.stat.math usenet group. Marsaglia G, Zaman A (1994). "Some portable very-long-period random number generators." _Computers in Physics_, 117-121. Matsumoto M, Nishimura T (1998). "Mersenne Twister: A 623-dimensionally equidistributed uniform pseudo-random number generator." _ACM Transactions on Modeling and Computer Simulation_, 3-30. . Reeds J, Hubert S, Abrahams M (1982-4). "C implementation of SuperDuper, University of California at Berkeley." Personal communication from Jim Reeds to Ross Ihaka. Wichmann BA, Hill ID (1982). "Algorithm AS 183: An Efficient and Portable Pseudo-random Number Generator." _Applied Statistics_, 188-190. Remarks: 34, 198 and 35, 89. (????). "ANSI/IEEE 754 Floating-Point Standard." . --- @Book{R:Chambers:1998, author = {John M. Chambers}, title = {Programming with Data}, publisher = {Springer}, year = {1998}, address = {New York}, note = {ISBN 0-387-98503-4}, url = {http://cm.bell-labs.com/cm/ms/departments/sia/Sbook/}, publisherurl = {http://www.springeronline.com/sgw/cda/frontpage/0,11855,4-40109-22-2008951-0,00.html}, abstract = {This Green Book describes version 4 of S, a major revision of S designed by John Chambers to improve its usefulness at every stage of the programming process.}, } @Book{R:Becker+Chambers+Wilks:1988, author = {Richard A. Becker and John M. Chambers and Allan R. Wilks}, title = {The New {S} Language}, publisher = {Chapman \& Hall}, year = {1988}, address = {London}, abstract = {This book is often called the {Blue Book}, and introduced what is now known as S version 3, or S3.}, } @Book{R:Chambers+Hastie:1992, author = {John M. Chambers and Trevor J. Hastie}, title = {Statistical Models in {S}}, publisher = {Chapman \& Hall}, year = {1992}, address = {London}, note = {ISBN 9780412830402}, publisherurl = {http://www.crcpress.com/shopping_cart/products/product_detail.asp?sku=C3040&parent_id=&pc=}, abstract = {This is also called the {White Book}. It described software for statistical modeling in S and introduced the S3 version of classes and methods.}, } @Book{linpack, author = {J. J. Dongarra and J. R. Bunch and C. B. Moder and G. W. Stewart}, title = {LINPACK users guide}, publisher = {SIAM}, address = {Philadelphia}, year = {1978}, } @Book{handbook+math+functions, author = {M. Abramowitz and I. A Stegun}, year = {1972}, title = {Handbook of Mathematical Functions}, address = {New York}, publisher = {Dover Publications}, } @Manual{lapack, author = {Anderson. E. and {ten others}}, year = {1999}, title = {{LAPACK} Users Guide}, url = {http://www.netlib.org/lapack/lug/lapack_lug.html}, publisher = {SIAM}, edition = {Third}, } @Book{eigen, author = {B. T Smith and J. M. Boyle and J. J. Dongarra and B. S. Garbow and Y. Ikebe and V. Klema and C. B. Moler}, year = {1976}, publisher = {Springer-Verlag}, title = {Matrix Eigensystems Routines -- {EISPACK} Guide}, } @Manual{cobjectconversion, author = {Duncan Temple Lang}, year = {2001}, url = {http://developer.R-project.org/CObjectConversion.pdf}, title = {An Extensible Conversion Mechanism for {.C()} calls}, } @Book{algebraicEigen, author = {J. H. Wilkinson}, year = {1965}, publisher = {Clarendon Press}, address = {Oxford}, title = {The Algebraic Eigenvalue Problem}, } @Book{C, author = {B. W. Kernighan and D. M. Ritchie}, year = {1988}, title = {The C Programming Language}, edition = {Second Edition}, publisher = {Prentice Hall}, } @Manual{dateformats, author = {International Organization {for Standardization}}, title = {ISO 8601. Data elements and interchange formats -- Information interchange -- Representation of dates and times}, year = {2004, 1988, 1997, ...}, url = {http://www.qsl.net/g1smd/isopdf.htm}, } @Manual{R:writingRExtensions, author = {{R Development Core Team}}, organization = {R Foundation for Statistical Computing}, address = {Vienna, Austria}, year = {2009}, title = {Writing R extensions}, url = {http://cran.r-project.org/doc/manuals/R-exts.html}, } @Manual{R:installadmin, author = {{R Development Core Team}}, organization = {R Foundation for Statistical Computing}, address = {Vienna, Austria}, year = {2009}, title = {R installation and Administration}, url = {http://cran.r-project.org/doc/manuals/R-admin.html}, } @Article{Rnews:Lang:2001a, author = {Duncan Temple Lang}, title = {In Search of {C/C++} \& {FORTRAN} Routines}, journal = {R News}, year = {2001}, volume = {1}, number = {3}, pages = {20--23}, month = {September}, url = {http://CRAN.R-project.org/doc/Rnews/}, pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2001-3.pdf}, } @Article{floatingpoint, author = {D. Goldberg}, year = {1991}, title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic}, journal = {ACM Computing Surveys}, volume = {23}, number = {1}, url = {http://www.validlab.com/goldberg/}, pdf = {http://www.validlab.com/goldberg/paper.pdf}, } @Book{graphicalmethods, author = {J. M. Chambers and W. S. Cleveland and B. Kleiner and P.A. Tukey}, title = {Graphical Methods for Data Analysis}, publisher = {Wadsworth}, year = {1983}, } @Book{matrixAlgebra, author = {Shayle R. Searle}, title = {Matrix Algebra Useful for Statistics}, publisher = {John Wiley and Sons}, year = {1982}, } @Book{MASS, author = {William N. Venables and Brian D. Ripley}, title = {Modern Applied Statistics with {S}. Fourth Edition}, publisher = {Springer}, year = {2002}, address = {New York}, note = {ISBN 0-387-95457-0}, url = {http://www.stats.ox.ac.uk/pub/MASS4/}, publisherurl = {http://www.springeronline.com/sgw/cda/frontpage/0,11855,4-40109-22-1542120-0,00.html}, abstract = {A highly recommended book on how to do statistical data analysis using R or S-Plus. In the first chapters it gives an introduction to the S language. Then it covers a wide range of statistical methodology, including linear and generalized linear models, non-linear and smooth regression, tree-based methods, random and mixed effects, exploratory multivariate analysis, classification, survival analysis, time series analysis, spatial statistics, and optimization. The on-line complements available at the books homepage provide updates of the book, as well as further details of technical material. }, orderinfo = {http://www.r-project.org/doc/bib/springer.txt}, } @Article{toms+algorithm, author = {{Jenkins} and {Traub}}, year = {1972}, title = {{TOMS} Algorithm 419}, journal = {Comm. ACM}, edition = {15}, pages = {97--99}, } @Book{StockasticSimulation, author = {B. D. Ripley}, title = {Stochastic Simulation}, publisher = {Wiley}, year = {1987}, } @Book{unixpower, author = {M. et al Loukides}, year = {2002}, title = {Unix Power Tools}, publisher = {O Reilly}, } @Article{shellsort, author = {R. Sedgewick}, title = {A new upper bound for Shell sort}, journal = {J. Algorithms}, edition = {7}, pages = {159--173}, year = {1986}, } @Article{sort+minimal+storage, author = {R. C. Singleton}, title = {An efficient algorithm for sorting with minimal storage: Algorithm 347}, journal = {Communications of the ACM}, edition = {12}, pages = {185--187}, year = {1969}, } @Article{machar, author = {W. J. Cody}, title = {{MACHAR}: A subroutine to dynamically determine machine parameters}, edition = {14}, number = {4}, pages = {303--311}, year = {1988}, journal = {Transactions on Mathematical Software}, } @Misc{ascii+unicode, author = {Markus Kuhn}, title = {ASCII and Unicode quotation marks}, url = {http://www.cl.cam.ac.uk/~mgk25/ucs/quotes.html}, } @Misc{bash+cmd, author = {Mike Huffman}, title = {Operating Systems, Unix Shell (bash) / Windows Console (CMD.EXE)}, url = {http://www.mhuffman.com/notes/dos/bash_cmd.htm}, year = {2003}, } @Misc{wikipedia:collating+sequence, title = {Collating Sequence}, year = {2009}, url = {http://en.wikipedia.org/wiki/Collating_sequence}, } @Misc{unicode+collation+algorithm, title = {Unicode Collation Algorithm}, url = {http://unicode.org/reports/tr10/}, author = {Mark Davis and Ken Whistler}, year = {2008}, } @Article{random:ahrens+dieter, title = {Extensions of Forsythes method for random sampling from the normal distribution}, author = {J. H. Ahrens and U. Dieter}, year = {1973}, journal = {Mathematics of Computation}, edition = {27}, pages = {927--937}, } @Article{random:box+muller, title = {A note on the generation of normal random deviates}, author = {G. E. P. Box and M. E. Muller}, year = {1958}, journal = {Annals of Mathematical Statistics}, edition = {29}, pages = {610--611}, } @Article{random:matteis+pagnutti, title = {Long-range Correlation Analysis of the Wichmann-Hill Random Number Generator}, year = {1993}, author = {A. {De Matteis} and S. Pagnutti}, journal = {Statist. Comput.}, edition = {3}, pages = {67--70}, } @Article{random:kinderman+ramage, title = {Computer generation of normal random variables}, author = {A. J. Kinderman and J. G. Ramage}, year = {1976}, journal = {Journal of the American Statistical Association}, edition = {71}, pages = {893--896}, } @Book{knuth:1997, title = {The Art of Computer Programming}, author = {D. E. Knuth}, year = {1997}, volume = {2}, edition = {Third edition}, url = {http://www-cs-faculty.stanford.edu/~knuth/taocp.html}, publisher = {Addison-Wesley Professional}, } @Book{knuth:2002, title = {The Art of Computer Programming}, author = {D. E. Knuth}, year = {1997}, volume = {2}, edition = {Third edition, ninth printing}, url = {http://Sunburn.Stanford.EDU/~knuth/news02.html}, publisher = {Addison-Wesley Professional}, } @Misc{random:marsaglia:1997, title = {A random number generator for C}, author = {G Marsaglia}, year = {1997}, note = {Discussion paper, posting on {sci.stat.math} usenet group}, } @Article{random:marsaglia+zaman:1998, title = {Some portable very-long-period random number generators}, author = {G. Marsaglia and A. Zaman}, year = {1994}, journal = {Computers in Physics}, edition = {8}, pages = {117--121}, } @Article{random:matsumoto+nishimura:1998, author = {M. Matsumoto and T. Nishimura}, title = {Mersenne Twister: A 623-dimensionally equidistributed uniform pseudo-random number generator}, journal = {ACM Transactions on Modeling and Computer Simulation}, edition = {8}, pages = {3--30}, url = {http://www.math.keio.ac.jp/~matumoto/emt.html}, year = {1998}, } @Misc{random:superduper, author = {J. Reeds and S. Hubert and M. Abrahams}, title = {C implementation of SuperDuper, University of California at Berkeley}, year = {1982--4}, note = {Personal communication from Jim Reeds to Ross Ihaka}, institution = {University of California at Berkeley}, } @Article{random:whichmann+hill:1982, title = {Algorithm {AS} 183: An Efficient and Portable Pseudo-random Number Generator}, journal = {Applied Statistics}, author = {B. A. Wichmann and I. D. Hill}, edition = {31}, pages = {188--190}, note = {Remarks: 34, 198 and 35, 89}, year = {1982}, } @Misc{ansi754, title = {{ANSI/IEEE} 754 Floating-Point Standard}, url = {http://grouper.ieee.org/groups/754/}, } # Read datasets Smith GA, G. S (1983). "Clocking g: relating intelligence and measures of timed performance." _Intelligence_, 353-368. Brown RG (1963). _Smoothing, Forecasting and Prediction of Discrete Time Series_. Prentice-Hall. Chambers JM, Cleveland WS, Kleiner B, Tukey PA (1983). _Graphical Methods for Data Analysis_. Wadsworth, Belmont, CA. Anscombe FJ (1973). "Graphs in statistical analysis." _American Statistician_, 17-21. Boore DM, Joyner W (1982). "The empirical prediction of ground motion." _Bull. Seism. Soc. Am._, S269-S268. Bolt BA, Abrahamson NA (1982). "New attenuation relations for peak and expected accelerations of strong ground motion." _Bull. Seism. Soc. Am._, 2307-2321. A. BB, Abrahamson NA (1983). "Reply to W. B. Joyner & D. M. Boore's." _Bull. Seism. Soc. Am._, 1481-1483. Comments on: New attenuation relations for peak and expected accelerations for peak and expected accelerations of strong ground motion. Brillinger DR, Preisler HK (1984). "An exploratory analysis of the Joyner-Boore attenuation data." _Bull. Seism. Soc. Am._, 1441-1449. Brillinger DR, Preisler HK (1984). "Further analysis of the Joyner-Boore attenuation data." Manuscript. Box GEP, Jenkins GM (1976). _Time Series Analysis, Forecasting and Control_. Holden-Day, San Francisco. Brockwell PJ, Davis RA (1991). _Time Series: Theory and Methods_, Second edition edition. Springer Verlag, New York. McNeil DR (1977). _Interactive Data Analysis_. Wiley, New York. Cleveland WS (1993). _Visualizing Data_. Summit Press, New Jersey. Garson J (1900). "The metric system of identification of criminals, as used in in Great Britain and Ireland." _The Journal of the Anthropological Institute of Great Britain and Ireland_, 177-227. MacDonell W (1902). "On criminal anthropometry and the identification of criminals." _Biometrika_, 177-227. Student (1908). "The probable error of a mean." _Biometrika_, 1-25. Härdle W (1991). _Smoothing Techniques with Implementation in S_. Springer, New York. Azzalini A, Bowman AW (1990). "A look at some data on the Old Faithful geyser." _Applied Statistics_, 357-365. Snee RD (1974). "Graphical display of two-way contingency tables." _The American Statistician_, 9-12. Friendly M (1992a). "Graphical methods for categorical data." _SAS User Group International Conference Proceedings_, 190-200. . Friendly M (1992b). "Mosaic displays for loglinear models." _Proceedings of the Statistical Graphics Section_, 61-68. . Friendly M (2000). _Visualizing Categorical Data_. SAS Institute. ISBN 1-58025-660-0. Sterling A (1977). Unpublished BS Thesis. Belsley D. A. KE, Welsch RE (1980). _Regression Diagnostics_. Wiley, New York. Campbell MJ, Walker AM (1977). "A Survey of statistical work on the Mackenzie River series of annual Canadian lynx trappings for the years 1821-1934 and a new analysis." _Journal of the Royal Statistical Society_, 411-431. Balke NS (1993). "Detecting level shifts in time series." _Journal of Business and Economic Statistics_, 81-92. Cobb GW (1978). "The problem of the Nile: conditional solution to a change-point problem." _Biometrika_, 243-51. Scheffé H (1959). _The Analysis of Variance_. Wiley, New York. Dodge Y (1996). "The guinea pig of multiple regression." _Lecture Notes in Statistics_. In: Robust Statistics, Data Analysis, and Computer Intensive Methods; In Honor of Peter Huber's 60th Birthday. Atkinson AC (1985). _Plots, Transformations and Regression_. Oxford University Press. Bickel PJ, Hammel EA, O'Connell JW (1975). "Sex bias in graduate admissions: Data from Berkeley." _Science_, 398-403. Harvey AC, Durbin J (1986). "The effects of seat belt legislation on British road casualties: A case study in structural time series modelling." _Journal of the Royal Statistical Society_, 187-227. Tukey JW (1977). _Exploratory Data Analysis_. Addison-Wesley. McNeil DR (1977). _Interactive Data Analysis_. Wiley. Makridakis S, Wheelwright SC, Hyndman RJ (1998). _Forecasting: Methods and Applications_. Wiley. --- @Article{smith+stanley:1983, author = {G. A. Smith and Stanley G.}, year = {1983}, title = {Clocking g: relating intelligence and measures of timed performance}, journal = {Intelligence}, edition = {7}, pages = {353--368}, } @Book{brown:1963, author = {R. G. Brown}, title = {Smoothing, Forecasting and Prediction of Discrete Time Series}, year = {1963}, publisher = {Prentice-Hall}, } @Book{chambers+cleveland+kleiner+tukey:1983, author = {J. M. Chambers and W. S. Cleveland and B. Kleiner and P. A. Tukey}, year = {1983}, title = {Graphical Methods for Data Analysis}, address = {Belmont, CA}, publisher = {Wadsworth}, } @Article{anscombe:1973, author = {Francis J. Anscombe}, year = {1973}, journal = {American Statistician}, edition = {27}, pages = {17--21}, title = {Graphs in statistical analysis}, } @Article{boore+joyner:1982, author = {D. M. Boore and W.B. Joyner}, year = {1982}, title = {The empirical prediction of ground motion}, journal = {Bull. Seism. Soc. Am.}, edition = {72}, pages = {S269--S268}, } @Article{bolt+abrahamson:1982, author = {B. A. Bolt and N. A. Abrahamson}, year = {1982}, title = {New attenuation relations for peak and expected accelerations of strong ground motion}, journal = {Bull. Seism. Soc. Am.}, edition = {72}, pages = {2307--2321}, } @Article{bolt+abrahamson:1983, year = {1983}, title = {Reply to W. B. Joyner & D. M. Boore's}, note = {Comments on: New attenuation relations for peak and expected accelerations for peak and expected accelerations of strong ground motion}, journal = {Bull. Seism. Soc. Am.}, edition = {73}, pages = {1481--1483}, author = {Bolt B. A. and N. A. Abrahamson}, } @Article{brillinger+preisler:1984, author = {D. R. Brillinger and H. K. Preisler}, year = {1984}, title = {An exploratory analysis of the Joyner-Boore attenuation data}, journal = {Bull. Seism. Soc. Am.}, edition = {74}, pages = {1441--1449}, } @Misc{brillinger+preisler:1984-2, author = {D. R. Brillinger and H. K. Preisler}, year = {1984}, title = {Further analysis of the Joyner-Boore attenuation data}, note = {Manuscript}, } @Book{box+jenkins:1976, author = {G. E. P. Box and G. M. Jenkins}, year = {1976}, title = {Time Series Analysis, Forecasting and Control}, publisher = {Holden-Day}, address = {San Francisco}, } @Book{brockwell+davis:1991, author = {P. J. Brockwell and R. A. Davis}, year = {1991}, title = {Time Series: Theory and Methods}, edition = {Second edition}, publisher = {Springer Verlag}, address = {New York}, } @Book{mcneil:1977, author = {D. R. McNeil}, title = {Interactive Data Analysis}, year = {1977}, publisher = {Wiley}, address = {New York}, } @Book{cleveland:1993, author = {W. S. Cleveland}, title = {Visualizing Data}, year = {1993}, publisher = {Summit Press}, address = {New Jersey}, } @Article{garson:1900, title = {The metric system of identification of criminals, as used in in Great Britain and Ireland}, author = {J.G. Garson}, year = {1900}, journal = {The Journal of the Anthropological Institute of Great Britain and Ireland}, edition = {30}, number = {2}, pages = {177--227}, } @Article{macdonell:1902, author = {W.R. MacDonell}, year = {1902}, title = {On criminal anthropometry and the identification of criminals}, journal = {Biometrika}, edition = {1}, number = {2}, pages = {177--227}, } @Article{student:1908, author = {{Student}}, year = {1908}, title = {The probable error of a mean}, journal = {Biometrika}, edition = {6}, pages = {1--25}, } @Book{haerdle:1991, author = {W. Härdle}, year = {1991}, title = {Smoothing Techniques with Implementation in S}, publisher = {Springer}, address = {New York}, } @Article{azzalini+bowman:1990, author = {A. Azzalini and A. W. Bowman}, year = {1990}, title = {A look at some data on the Old Faithful geyser}, journal = {Applied Statistics}, edition = {39}, pages = {357--365}, } @Article{snee:1974, author = {R. D. Snee}, year = {1974}, title = {Graphical display of two-way contingency tables}, journal = {The American Statistician}, edition = {28}, pages = {9--12}, } @Article{friendly:1992a, author = {M. Friendly}, year = {1992a}, title = {Graphical methods for categorical data}, journal = {SAS User Group International Conference Proceedings}, edition = {17}, pages = {190--200}, url = {http://www.math.yorku.ca/SCS/sugi/sugi17-paper.html}, } @Article{friendly:1992b, author = {M. Friendly}, year = {1992b}, title = {Mosaic displays for loglinear models}, journal = {Proceedings of the Statistical Graphics Section}, institution = {American Statistical Association}, pages = {61--68}, url = {http://www.math.yorku.ca/SCS/Papers/asa92.html}, } @Book{friendly:2000, author = {M. Friendly}, year = {2000}, title = {Visualizing Categorical Data}, publisher = {SAS Institute}, isbn = {1-58025-660-0}, } @Misc{sterling:1977, author = {Arnie Sterling}, year = {1977}, note = {Unpublished BS Thesis}, institution = {Massachusetts Institute of Technology}, } @Book{belsley+kuh+welsch:1980, author = {Kuh. E. {Belsley D. A.} and R. E. Welsch}, year = {1980}, title = {Regression Diagnostics}, address = {New York}, publisher = {Wiley}, } @Article{campbell+Walker:1977, author = {M. J. Campbell and A. M. Walker}, year = {1977}, title = {A Survey of statistical work on the Mackenzie River series of annual Canadian lynx trappings for the years 1821--1934 and a new analysis}, journal = {Journal of the Royal Statistical Society}, series = {A}, edition = {140}, pages = {411--431}, } @Article{balke:1983, author = {N. S. Balke}, year = {1993}, title = {Detecting level shifts in time series}, journal = {Journal of Business and Economic Statistics}, edition = {11}, pages = {81--92}, } @Article{cobb:1978, author = {G. W. Cobb}, year = {1978}, title = {The problem of the Nile: conditional solution to a change-point problem}, journal = {Biometrika}, edition = {65}, pages = {243--51}, } @Book{scheffe:1959, author = {Henry Scheffé}, year = {1959}, title = {The Analysis of Variance}, publisher = {Wiley}, address = {New York}, } @Article{dodge:1996, author = {Y. Dodge}, year = {1996}, title = {The guinea pig of multiple regression}, note = {In: Robust Statistics, Data Analysis, and Computer Intensive Methods; In Honor of Peter Huber's 60th Birthday}, journal = {Lecture Notes in Statistics}, edition = {109}, publisher = {Springer-Verlag}, address = {New York}, } @Book{atkinson:1985, author = {A. C. Atkinson}, year = {1985}, title = {Plots, Transformations and Regression}, publisher = {Oxford University Press}, } @Article{bickel+hammel+oconnell:1975, author = {P. J. Bickel and E. A. Hammel and J. W. O'Connell}, year = {1975}, title = {Sex bias in graduate admissions: Data from Berkeley}, journal = {Science}, edition = {187}, pages = {398--403}, } @Article{harvey+Durbin:1986, author = {A. C. Harvey and J. Durbin}, year = {1986}, title = {The effects of seat belt legislation on British road casualties: A case study in structural time series modelling}, journal = {Journal of the Royal Statistical Society}, series = {B}, edition = {149}, pages = {187--227}, } @Book{tukey:1977, author = {J. W. Tukey}, year = {1977}, title = {Exploratory Data Analysis}, publisher = {Addison-Wesley}, } @Book{mcneil:1977, author = {D. R. McNeil}, year = {1977}, title = {Interactive Data Analysis}, publisher = {Wiley}, } @Book{makridakis+wheelwright+hyndma:1998, author = {S. Makridakis and S. C. Wheelwright and R. J. Hyndman}, year = {1998}, title = {Forecasting: Methods and Applications}, publisher = {Wiley}, } # Read graphics Murrell P (2005). _R Graphics_. Chapman & Hall/CRC Press. Cohen A (1980). "On the graphical display of the significant components in a two-way contingency table." _Communications in Statistics-Theory and Methods_, 1025-1041. Friendly M (1982). "Graphical methods for categorical data." _SAS User Group International Conference Proceedings_, 190-200. . Meyer D, Zeileis A, Hornik K (2005). "The strucplot framework: Visualizing multi-way contingency tables with vcd." Department of Statistics and Mathematics, Wirtschaftsuniversität, Wien. Report 22, Research Report Series, . Chambers JM, Cleveland WS, Kleiner B, Tukey PA (1983). _Graphical Methods for Data Analysis_. Wadsworth & Brooks/Cole. Hofmann H, Theus M (2005). "Interactive graphics for visualizing conditional distributions." Unpublished Manuscript. Cleveland WS (1993). _Visualizing Data_. Summit Press, New Jersey. Cleveland WS (1985). _The Elements of Graphing Data_. Wadsworth, Monterey, CA. Cleveland WS (1993). _Visualizing Data_. Summit Press, New Jersey: Hobart. Friendly M (1994). "A fourfold display for 2 by 2 by k tables." York University, Psychology Department. Technical Report 217, . Murrell PR (1999). "Layouts: A mechanism for arranging plots on a page." _Journal of Computational and Graphical Statistics_, 121-134. Hartigan J, Kleiner B (1984). "A mosaic of television ratings." _The American Statistician_, 32-35. Emerson JW (1998). "Mosaic displays in S-PLUS: A general implementation and a case study." _Statistical Computing and Graphics Newsletter (ASA)_, 17-23. Friendly M (1994). "Mosaic displays for multi-way contingency tables." _Journal of the American Statistical Association_, 190-200. Friendly M (????). "The home page of Michael Friendly." . Cleveland WS (1985). _The elements of graphing data_. Wadsworth, Monterey, CA, USA. Freeny AE, Landwehr JM (1990). "Displays for data from large designed experiments." _Computer Science and Statistics: Proc. 22nd Symp. Interface_, 117-126. Chambers JM, Hastie TJ (1992). _Statistical Models in S_. Wadsworth & Brooks/Cole. Hummel J (1996). "Linked bar charts: Analysing categorical data graphically." _Computational Statistics_, 23-33. Schilling MF, Watkins AE (1994). "A suggestion for sunflower plots." _The American Statistician_, 303-305. Blanc C, Schlick C (1995). "X-splines : A Spline Model Designed for the End User." In _Proceedings of SIGGRAPH 95_, 377-386. . Murrell P (1998). _Investigations in Graphical Statistics_. Ph.D. thesis, The University of Auckland. --- @Book{murrell:2005, author = {P. Murrell}, year = {2005}, title = {R Graphics}, publisher = {Chapman & Hall/CRC Press}, } @Article{cohen:1980, author = {A. Cohen}, year = {1980}, title = {On the graphical display of the significant components in a two-way contingency table}, journal = {Communications in Statistics---Theory and Methods}, edition = {A9}, pages = {1025--1041}, } @Article{friendly:1992, title = {Graphical methods for categorical data}, journal = {SAS User Group International Conference Proceedings}, edition = {17}, pages = {190--200}, url = {http://www.math.yorku.ca/SCS/sugi/sugi17-paper.html}, year = {1982}, author = {M. Friendly}, } @TechReport{meyer+zeileis+hornik:2005, author = {D. Meyer and A. Zeileis and K. Hornik}, year = {2005}, title = {The strucplot framework: Visualizing multi-way contingency tables with vcd}, note = {Report 22, Research Report Series}, institution = {Department of Statistics and Mathematics, Wirtschaftsuniversität, Wien}, url = {http://epub.wu-wien.ac.at/dyn/openURL?id=oai:epub.wu-wien.ac.at:epub-wu-01_8a1}, } @Book{chambers+cleveland+kleiner+tukey:1983, author = {J. M. Chambers and W. S. Cleveland and B. Kleiner and P. A. Tukey}, year = {1983}, title = {Graphical Methods for Data Analysis}, publisher = {Wadsworth & Brooks/Cole}, } @Misc{hofmann+theus:2005, author = {H. Hofmann and M. Theus}, year = {2005}, title = {Interactive graphics for visualizing conditional distributions}, note = {Unpublished Manuscript}, } @Book{cleveland:1993, author = {W. S. Cleveland}, year = {1993}, title = {Visualizing Data}, address = {New Jersey}, publisher = {Summit Press}, } @Book{cleveland:1985, author = {W. S. Cleveland}, year = {1985}, title = {The Elements of Graphing Data}, address = {Monterey, CA}, publisher = {Wadsworth}, } @Book{cleveland:1993, author = {W. S. Cleveland}, year = {1993}, title = {Visualizing Data}, address = {New Jersey: Hobart}, publisher = {Summit Press}, } @TechReport{friendly:1994, author = {M. Friendly}, year = {1994}, title = {A fourfold display for 2 by 2 by k tables}, note = {Technical Report 217}, institution = {York University, Psychology Department}, url = {http://www.math.yorku.ca/SCS/Papers/4fold/4fold.ps.gz}, } @Article{murrell:1999, author = {P. R. Murrell}, year = {1999}, title = {Layouts: A mechanism for arranging plots on a page}, journal = {Journal of Computational and Graphical Statistics}, edition = {8}, pages = {121-134}, } @Article{hartigan+kleiner:1984, author = {J.A. Hartigan and B. Kleiner}, year = {1984}, title = {A mosaic of television ratings}, journal = {The American Statistician}, edition = {38}, pages = {32--35}, } @Article{emerson:1998, author = {J. W. Emerson}, year = {1998}, title = {Mosaic displays in S-PLUS: A general implementation and a case study}, journal = {Statistical Computing and Graphics Newsletter (ASA)}, edition = {9}, number = {1}, pages = {17--23}, } @Article{friendly:1994, author = {M. Friendly}, year = {1994}, title = {Mosaic displays for multi-way contingency tables}, journal = {Journal of the American Statistical Association}, edition = {89}, pages = {190--200}, } @Misc{friendly, author = {M. Friendly}, url = {http://www.math.yorku.ca/SCS/friendly.html}, title = {The home page of Michael Friendly}, } @Book{cleveland:1985, author = {W. S. Cleveland}, year = {1985}, title = {The elements of graphing data}, address = {Monterey, CA, USA}, publisher = {Wadsworth}, } @Article{freeny+landwehr:1990, author = {A. E. Freeny and J. M. Landwehr}, year = {1990}, title = {Displays for data from large designed experiments}, journal = {Computer Science and Statistics: Proc.{ }22nd Symp.{ }Interface}, pages = {117--126}, publisher = {Springer Verlag}, } @Book{chambers+hastie:1992, author = {J. M. Chambers and T. J. Hastie}, year = {1992}, title = {Statistical Models in S}, publisher = {Wadsworth & Brooks/Cole}, } @Article{hummel:1996, author = {J. Hummel}, year = {1996}, title = {Linked bar charts: Analysing categorical data graphically}, journal = {Computational Statistics}, edition = {11}, pages = {23--33}, } @Article{schilling+watkins:1994, author = {M. F. Schilling and A. E. Watkins}, year = {1994}, title = {A suggestion for sunflower plots}, journal = {The American Statistician}, edition = {48}, pages = {303--305}, } @InProceedings{blanc+schlick:1995, author = {C. Blanc and C. Schlick}, year = {1995}, title = {X-splines : A Spline Model Designed for the End User}, booktitle = {Proceedings of SIGGRAPH 95}, pages = {377--386}, url = {http://dept-info.labri.fr/~schlick/DOC/sig1.html}, } @PhdThesis{murrell:1988, author = {Paul Murrell}, title = {Investigations in Graphical Statistics}, school = {The University of Auckland}, year = {1998}, } # Read grDevices Tukey JW (1977). _Exploratory Data Analysis_. Addison Wesley. McGill R, Tukey JW, Larsen WA (1978). "Variations of box plots." _The American Statistician_, 12-16. Velleman PF, Hoaglin DC (1981). _Applications, Basics and Computing of Exploratory Data Analysis_. Duxbury Press. Emerson JD, Strenio J (1983). "Understanding Robust and Exploratory Data Analysis." In D. C. Hoaglin FM, Tukey JW (eds.), chapter Boxplots and batch comparison. Wiley. Chambers JM, Cleveland WS, Kleiner B, Tukey PA (1983). _Graphical Methods for Data Analysis_. Wadsworth & Brooks/Cole. Eddy WF (1977). "A new convex hull algorithm for planar sets." _ACM Transactions on Mathematical Software_, 398-403. Eddy WF (1977). "Algorithm 523. CONVEX, A new convex hull algorithm for planar sets[Z]." _ACM Transactions on Mathematical Software_, 411-412. Lindbloom BJ (2001-2009). "Bruce Lindbloom website." . Ihaka R (2003). "Colour for Presentation Graphics." In _Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003)_. Technische Universität Wien, Vienna, Austria. . The Free Software Foundation (????). "The plotutils package." . Freedman D, Diaconis P (1981). "On the histogram as a density estimator: L_2 theory." _Zeitschrift für Wahrscheinlichkeitstheorie und verwandte Gebiete_, 453-476. Scott DW (1979). "On optimal and data-based histograms." _Biometrika_, 605-610. Scott DW (1992). _Multivariate Density Estimation. Theory, Practice, and Visualization_. Wiley. Sturges HA (1926). "The choice of a class interval." _Journal of the American Statistical Association_, 65-66. Knuth DE (1984). _The TeXbook_. Addison-Wesley, Reading, MA. Lamport L (1994). _LATEX: A Document Preparation System_. Addison-Wesley, Reading, MA. Goossens M, Mittelbach F, Samarin A (1994). _The LATEX Companion._. Addison-Wesley, Reading, MA. Murrell P, Ihaka R (2000). "An approach to providing mathematical annotation in plots." _Journal of Computational and Graphical Statistics_, 582-599. --- @Book{tukey:1977, author = {J. W. Tukey}, year = {1977}, title = {Exploratory Data Analysis}, publisher = {Addison Wesley}, } @Article{mcgill+tukey+larsen:1978, author = {R. McGill and J. W. Tukey and W. A. Larsen}, year = {1978}, title = {Variations of box plots}, journal = {The American Statistician}, edition = {32}, pages = {12--16}, } @Book{velleman+hoaglin:1981, author = {P. F. Velleman and D. C. Hoaglin}, year = {1981}, title = {Applications, Basics and Computing of Exploratory Data Analysis}, publisher = {Duxbury Press}, } @InBook{emerson+strenio:1983, author = {J. D Emerson and J. Strenio}, year = {1983}, chapter = {Boxplots and batch comparison}, editor = {F. Mosteller {D. C. Hoaglin} and J. W. Tukey}, publisher = {Wiley}, title = {Understanding Robust and Exploratory Data Analysis}, } @Book{chambers+cleveland+kleiner+tukey:1983, author = {J. M. Chambers and W. S. Cleveland and B. Kleiner and P. A. Tukey}, year = {1983}, title = {Graphical Methods for Data Analysis}, publisher = {Wadsworth & Brooks/Cole}, } @Article{eddy:1977a, author = {W. F. Eddy}, year = {1977}, title = {A new convex hull algorithm for planar sets}, journal = {ACM Transactions on Mathematical Software}, edition = {3}, pages = {398--403}, } @Article{eddy:1977b, author = {W. F. Eddy}, year = {1977}, title = {Algorithm 523. CONVEX, A new convex hull algorithm for planar sets[Z]}, journal = {ACM Transactions on Mathematical Software}, edition = {3}, pages = {411--412}, } @Misc{conversion, url = {http://www.brucelindbloom.com/}, author = {Bruce Justin Lindbloom}, year = {2001--2009}, title = {Bruce Lindbloom website}, } @InProceedings{ihaka:2003, author = {R. Ihaka}, year = {2003}, title = {Colour for Presentation Graphics}, booktitle = {Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003)}, organization = {Technische Universität Wien, Vienna, Austria}, url = {http://www.ci.tuwien.ac.at/Conferences/DSC-2003}, } @Misc{plotutils, author = {{The Free Software Foundation}}, url = {http://www.gnu.org/software/plotutils/plotutils.html}, title = {The plotutils package}, } @Article{freedman+diaconis:1981, author = {D. Freedman and P. Diaconis}, year = {1981}, title = {On the histogram as a density estimator: L_2 theory}, journal = {Zeitschrift für Wahrscheinlichkeitstheorie und verwandte Gebiete}, edition = {57}, pages = {453--476}, } @Article{scott:1979, author = {D. W. Scott}, year = {1979}, title = {On optimal and data-based histograms}, journal = {Biometrika}, edition = {66}, pages = {605--610}, } @Book{scott:1992, author = {D. W. Scott}, year = {1992}, title = {Multivariate Density Estimation. Theory, Practice, and Visualization}, publisher = {Wiley}, } @Article{sturges:1926, author = {H. A. Sturges}, year = {1926}, title = {The choice of a class interval}, journal = {Journal of the American Statistical Association}, edition = {21}, pages = {65--66}, } @Book{knuth:1984, author = {D. E. Knuth}, year = {1984}, title = {The TeXbook}, address = {Reading, MA}, publisher = {Addison-Wesley}, } @Book{lamport:1994, author = {L. Lamport}, year = {1994}, title = {{LATEX}: A Document Preparation System}, address = {Reading, MA}, publisher = {Addison-Wesley}, } @Book{goossens+mittelbach+Samarin:1994, author = {M. Goossens and F. Mittelbach and A. Samarin}, year = {1994}, title = {The {LATEX} Companion.}, address = {Reading, MA}, publisher = {Addison-Wesley}, } @Article{murrell+ihaka:2000, author = {P. Murrell and R. Ihaka}, year = {2000}, title = {An approach to providing mathematical annotation in plots}, journal = {Journal of Computational and Graphical Statistics}, edition = {9}, pages = {582--599}, } # Read methods Chambers JM (2008). _Software for Data Analysis: Programming with R_. Springer. Chambers JM (1998). _Programming with Data_. Springer. Chambers JM (2009). "Developments in Class Inheritance and Method Selection." . --- @Book{chambers:2008, author = {John M. Chambers}, year = {2008}, title = {Software for Data Analysis: Programming with R}, publisher = {Springer}, } @Book{chambers:1998, author = {John M. Chambers}, year = {1998}, title = {Programming with Data}, publisher = {Springer}, } @Misc{chambers:2009, author = {John M. Chambers}, year = {2009}, title = {Developments in Class Inheritance and Method Selection}, url = {http://stat.stanford.edu/~jmc4/classInheritance.pdf}, } # Read stats Sakamoto Y, Ishiguro M, G. K (1986). _Akaike Information Criterion Statistics_. Reidel Publishing Company. Chambers JM, Freeny A, Heiberger RM (1992). "Statistical Models in S." In Chambers JM, Hastie TJ (eds.), chapter Analysis of variance; designed experiments. Wadsworth & Brooks/Cole. Hastie TJ, Pregibon D (1992). "Statistical Models in S." In Chambers JM, Hastie TJ (eds.), chapter Generalized linear models. Wadsworth & Brooks/Cole. Chambers JM (1992). "Statistical Models in S." In Chambers JM, Hastie TJ (eds.), chapter Linear models. Wadsworth & Brooks/Cole. Bates DM, Chambers JM (1992). "Statistical Models in S." In Chambers JM, Hastie TJ (eds.), chapter Nonlinear models. Wadsworth & Brooks/Cole. Chambers JM, Hastie TJ (1992). "Statistical Models in S." In Chambers JM, Hastie TJ (eds.), chapter Statistical models. Wadsworth & Brooks/Cole. Chambers JM (1992). "Statistical Models in S." In Chambers JM, Hastie TJ (eds.), chapter Data for models. Wadsworth & Brooks/Cole. Cleveland WS, Grosse E, Shyu WM (1992). "Statistical Models in S." In Chambers JM, Hastie TJ (eds.), chapter Local regression. Wadsworth & Brooks/Cole. Hand DJ, Taylor CC (1987). _Multivariate Analysis of Variance and Repeated Measures_. Chapman and Hall. Bauer DF (1972). "Constructing confidence sets using rank statistics." _Journal of the American Statistical Association_, 687-690. Hajek J, Sidak Z, Sen PK (1999). _Theory of Rank Tests_. Academic Press, San Diego, London. Brockwell PJ, Davis RA (1996). _Introduction to Time Series and Forecasting_. Springer, New York. Gardner G, Harvey AC, Phillips GDA (1980). "Algorithm AS154. An algorithm for exact maximum likelihood estimation of autoregressive-moving average models by means of Kalman filtering." _Applied Statistics_, 311-322. Harvey AC (1993). _Time Series Models_, 2nd Edition edition. Harvester Wheatsheaf. Harvey AC, McKenzie CR (1982). "Algorithm AS182. An algorithm for finite sample prediction from ARIMA processes." _Applied Statistics_, 180-187. Jones RH (1980). "Maximum likelihood fitting of ARMA models to time series with missing observations." _Technometrics_, 389-395. Durbin J, Koopman SJ (2001). _Time Series Analysis by State Space Methods_. Oxford University Press. Gardner G, Harvey AC, Phillips GDA (1980). "Algorithm AS154. An algorithm for exact maximum likelihood estimation of autoregressive-moving average models by means of Kalman filtering." _Applied Statistics_, 311-322. Brockwell PJ, Davis RA (1991). _Time Series: Theory and Methods_, Second Edition edition. Springer. Luetkepohl H (1991). _Introduction to Multiple Time Series Analysis_. Springer Verlag, New York. Percival DP, Walden AT (1998). _Spectral Analysis for Physical Applications_. Cambridge University Press. Whittle P (1963). "On the fitting of multivariate autoregressions and the approximate canonical factorization of a spectral density matrix." _Biometrika_, 129-134. Scott DW (1992). _Multivariate Density Estimation. Theory, Practice, and Visualization_. Wiley. Sheather SJ, Jones MC (1991). "A reliable data-based bandwidth selection method for kernel density estimation." _Journal of the Royal Statistical Society_, 683-690. Silverman BW (1986). _Density Estimation_. Chapman and Hall, London. Bartlett MS (1937). "Properties of sufficiency and statistical tests." _Proceedings of the Royal Society of London_, 268-282. Abramowitz M, Stegun IA (1972). _Handbook of Mathematical Functions_. Dover, New York. Johnson NL, Kotz S, Balakrishnan N (1995). _Continuous Univariate Distributions_. Wiley, New York. Clopper CJ, Pearson ES (1934). "The use of confidence or fiducial limits illustrated in the case of the binomial." _Biometrika_, 404-413. Conover WJ (1971). _Practical nonparametric statistics_. John Wiley & Sons, New York. Hollander M, Wolfe DA (1973). _Nonparametric Statistical Methods_. John Wiley & Sons, New York. Gabriel KR (1971). "The biplot graphical display of matrices with applications to principal component analysis." _Biometrika_, 453-467. Gabriel KR, Odoroff CL (1990). "Biplots in biomedical research." _Statistics in Medicine_, 469-485. Gower J, Hand DJ (1996). _Biplots_. Chapman & Hall. Diaconis P, F. M (1989). "Methods for studying coincidences." _Journal of the American Statistical Association_, 853-861. Box GEP, Pierce DA (1970). "Distribution of residual correlations in autoregressive-integrated moving average time series models." _Journal of the American Statistical Association_, 1509-1526. Ljung GM, Box GEP (1978). "On a measure of lack of fit in time series models." _Biometrika_, 297-303. H. H (1936). "Relations between two sets of variables." _Biometrika_, 321-327. Seber GAF (1984). _Multivariate Observations_. Wiley, New York. Hope ACA (1968). "A simplified Monte Carlo significance test procedure." _Journal of the Royal Statistical Society_, 582-598. Patefield WM (1981). "Algorithm AS159. An efficient method of generating r x c tables with given row and column totals." _Applied Statistics_, 91-97. Cailliez F (1983). "The analytical solution of the additive constant problem." _Psychometrika_, 343-349. Cox TF, Cox MAA (1994). _Multidimensional Scaling_. Chapman and Hall. Gower JC (1966). "Some distance properties of latent root and vector methods used in multivariate analysis." _Biometrika_, 325-328. Mardia KV, Kent JT, Bibby JM (1979). _Multivariate Analysis_. Academic Press, London. Torgerson WS (1958). _Theory and Methods of Scaling_. Wiley, New York. Lange K (2001). _Numerical Analysis for Statisticians_. Springer. Brillinger DR (1981). _Time Series: Data Analysis and Theory_, Second Edition edition. Holden-Day, San Francisco. Sneath P, Sokal R (1973). _Numerical Taxonomy: The Principles and Practice of Numerical Classification_. Freeman, San Francisco. Best DJ, Roberts DE (1975). "Algorithm AS 89: The Upper Tail Probabilities of Spearman's rho." _Applied Statistics_, 377-379. Kendall M, Stuart A (1983). _The Advanced Theory of Statistics_, volume 3. Griffin. Griewank A, Corliss GF (1991). "Automatic Differentiation of Algorithms: Theory, Implementation, and Application." _SIAM proceedings_. Borg I, Groenen P (1997). _Modern Multidimensional Scaling. Theory and Applications_. Springer. Heiberger RM (1989). _Computation for the Analysis of Designed Experiments_. Wiley. Bartlett MS (1937). "The statistical conception of mental factors." _British Journal of Psychology_, 97-104. Bartlett MS (1938). "Methods of estimating mental factors." _Nature_, 609-610. Jöreskog KG (1963). _Statistical Estimation in Factor Analysis_. Almqvist and Wicksell. Lawley DN, Maxwell AE (1971). _Factor Analysis as a Statistical Method_, Second edition edition. Butterworths. Thomson GH (1951). _The Factorial Analysis of Human Ability_. London University Press. P. M, Nelder JA (1989). _Generalized Linear Models_. Chapman and Hall, London. Dobson AJ (1983). _An Introduction to Statistical Modelling_. Chapman and Hall, London. Dobson AJ (1990). _An Introduction to Generalized Linear Models_. Chapman and Hall, London. Cox DR, Snell EJ (1981). _Applied Statistics; Principles and Examples_. Chapman and Hall, London. Singleton RC (1979). "Mixed Radix Fast Fourier Transforms." In eds IDSPC (ed.), _Programs for Digital Signal Processing_. IEEE Press. Agresti A (1990). _Categorical data analysis_. Wiley, New York. Agresti A (2002). _Categorical data analysis_, Second edition. Wiley, New York. Fisher RA (1935). "The logic of inductive inference." _Journal of the Royal Statistical Society_, 39-54. Fisher RA (1962). "Confidence limits for a cross-product ratio." _Australian Journal of Statistics_, 41. Fisher RA (1970). _Statistical Methods for Research Workers_. Oliver & Boyd. Mehta CR, Patel NR (1986). "Algorithm 643. FEXACT: A Fortran subroutine for Fisher's exact test on unordered r*c contingency tables." _ACM Transactions on Mathematical Software_, 154-161. Clarkson DB, Fan Y, Joe H (1993). "A Remark on Algorithm 643: FEXACT: An Algorithm for Performing Fisher's Exact Test in r x c Contingency Tables." _ACM Transactions on Mathematical Software_, 484-488. Conover WJ, Johnson ME, Johnson MM (1981). "A comparative study of tests for homogeneity of variances, with applications to the outer continental shelf bidding data." _Technometrics_, 351-361. Shea BL (1988). "Algorithm AS 239, Chi-squared and incomplete Gamma integral." _Applied Statistics (JRSS C)_, 466-473. Davison AC, Snell EJ (1991). "Statistical Theory and Modelling. In Honour of Sir David Cox, FRS." In Hinkley DV, Reid N, Snell EJ (eds.), chapter Residuals and diagnostics. Chapman & Hall. Everitt B (1974). _Cluster Analysis_. Heinemann Educ. Books., London. Hartigan JA (1975). _Clustering Algorithms_. Wiley, New York. Sneath PHA, Sokal RR (1973). _Numerical Taxonomy_. Freeman, San Francisco. Anderberg MR (1973). _Cluster Analysis for Applications_. Academic Press, New York. Gordon AD (1999). _Classification_, Second Edition edition. Chapman and Hall / CRC, London. Murtagh F (1985). "Multidimensional Clustering Algorithms." In _COMPSTAT Lectures 4_. McQuitty L (1966). "Similarity Analysis by Reciprocal Pairs for Discrete and Continuous Data." _Educational and Psychological Measurement_, 825-831. Holt CC (1957). "Forecasting seasonals and trends by exponentially weighted moving averages." Carnigie Institute. ONR Research Memorandum. Winters PR (1960). "Forecasting sales by exponentially weighted moving averages." _Management Science_, 324-342. Johnson NL, Kotz S, Kemp AW (1992). _Univariate Discrete Distributions_, Second Edition edition. Wiley, New York. Belsley DA, Kuh E, Welsch RE (1980). _Regression Diagnostics_. Wiley, New York. Cook RD, Weisberg S (1982). _Residuals and Influence in Regression_. Chapman and Hall, London. Williams DA (1987). "Generalized linear model diagnostics using the deviance and single case deletions." _Applied Statistics_, 181-191. Fox J (1997). _Applied Regression, Linear Models, and Related Methods_. Sage. Fox J (2002). _An R and S-Plus Companion to Applied Regression_. Sage Publ. . Piessens R, deDoncker-Kapenga E, Uberhuber C, Kahaner D (1983). _Quadpack: a Subroutine Package for Automatic Integration_. Springer Verlag. Tukey JW (1977). _Exploratory Data Analysis_. Addison-Wesley, Reading. Barlow RE, Bartholomew DJ, Bremner JM, Brunk HD (1972). _Statistical inference under order restrictions_. Wiley, London. Robertson T, Wright FT, Dykstra RL (1988). _Order Restricted Statistical Inference_. Wiley, New York. Bloomfield P (1976). _Fourier Analysis of Time Series: An Introduction_. Wiley. Brockwell P, Davis R (1991). _Time Series: Theory and Methods_, Second edition edition. Springer. Forgy EW (1965). "Cluster analysis of multivariate data: efficiency vs interpretability of classifications." _Biometrics_. Hartigan JA, Wong MA (1979). "A K-means clustering algorithm." _Applied Statistics_, 100-108. Lloyd SP (1957). "Least squares quantization in PCM." Bell Laboratories. Lloyd SP (1982). "Least squares quantization in PCM." _IEEE Transactions on Information Theory_, 128-137. MacQueen J (1967). "Some methods for classification and analysis of multivariate observations." In Neyman LMLC&J (ed.), _Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability_, 1 edition, 281-297. University of California Press, Berkeley, CA. Birnbaum ZW, Tingey FH (1951). "One-sided confidence contours for probability distribution functions." _The Annals of Mathematical Statistics_, *4*, 592-596. Durbin J (1973). _Distribution theory for tests based on the sample distribution function_. SIAM. Marsaglia G, Tsang WW, Wang J (2003). "Evaluating Kolmogorov's distribution." _Journal of Statistical Software_. . Wilkinson GN, Rogers CE (1973). "Symbolic descriptions of factorial models for analysis of variance." _Applied Statistics_, 392-9. Harville D (1974). "Bayesian inference for variance components using only error contrasts." _Biometrika_, 383-385. Haberman SJ (1972). "Log-linear fit for contingency tables-Algorithm AS51." _Applied Statistics_, 218-225. Cleveland WS (1979). "Robust locally weighted regression and smoothing scatterplots." _Journal of the American Statistical Association_, 829-836. Cleveland WS (1981). "LOWESS: A program for smoothing scatterplots by robust locally weighted regression." _The American Statistician_, 54. Krzanowski WJ (1988). _Principles of Multivariate Analysis. A User's Perspective._. Oxford University Press. Krzanowski WJ, Marriott FHC (1994). _Multivariate Analysis. Part I: Distributions, Ordination and Inference_. Edward Arnold. Anderson TW (1958). _An Introduction to Multivariate Statistical Analysis_. Wiley. Anderson TW (1994). _An Introduction to Multivariate Statistical Analysis_. Wiley. Mielke Jr. PW (1967). "Note on some squared rank tests with existing ties." _Technometrics_, 312-314. Dennis JE, Schnabel RB (1983). _Numerical Methods for Unconstrained Optimization and Nonlinear Equations_. Prentice-Hall, Englewood Cliffs, NJ. Schnabel RB, Koontz JE, Weiss BE (1985). "A modular system of algorithms for unconstrained minimization." _ACM Trans. Math. Software_, 419-440. Bates DM, Watts DG (1988). _Nonlinear Regression Analysis and Its Applications_. Wiley. Welch BL (1951). "On the comparison of several mean values: an alternative approach." _Biometrika_, 330-336. Brent R (1973). _Algorithms for Minimization without Derivatives_. Prentice-Hall, Englewood Cliffs N.J. Belisle CJP (1992). "Convergence theorems for a class of simulated annealing algorithms on Rd." _Journal of Applied Probability_, 885-895. Byrd RH, Lu P, Nocedal J, Zhu C (1995). "A limited memory algorithm for bound constrained optimization." _SIAM J. Scientific Computing_, 1190-1208. Fletcher R, Reeves CM (1964). "Function minimization by conjugate gradients." _Computer Journal_, 148-154. Nash JC (1990). _Compact Numerical Methods for Computers. Linear Algebra and Function Minimisation._. Adam Hilger. Nelder JA, Mead R (1965). "A simplex algorithm for function minimization." _Computer Journal_, 308-313. Nocedal J, Wright SJ (1999). _Numerical Optimization_. Springer. Benjamini Y, Hochberg Y (1995). "Controlling the false discovery rate: a practical and powerful approach to multiple testing." _Journal of the Royal Statistical Society_, 289-300. Benjamini Y, Yekutieli D (2001). "The control of the false discovery rate in multiple testing under dependency." _Annals of Statistics_, 1165-1188. Holm S (1979). "A simple sequentially rejective multiple test procedure." _Scandinavian Journal of Statistics_, 65-70. Hommel G (1988). "A stagewise rejective multiple test procedure based on a modified Bonferroni test." _Biometrika_, 383-386. Hochberg Y (1988). "A sharper Bonferroni procedure for multiple tests of significance." _Biometrika_, 800-803. Shaffer JP (1995). "Multiple hypothesis testing." _Annual Review of Psychology_, 561-576. Sarkar S (1998). "Some probability inequalities for ordered MTP2 random variables: a proof of Simes conjecture." _Annals of Statistics_, 494-504. Sarkar S, Chang CK (1997). "Simes' method for multiple hypothesis testing with positively dependent test statistics." _Journal of the American Statistical Association_, 1601-1608. Wright SP (1992). "Adjusted P-values for simultaneous inference." _Biometrics_, 1005-1013. Holt CC (1957). "Forecasting seasonals and trends by exponentially weighted moving averages." Carnigie Institute 52. ONR Research Memorandum. Cook RD, Weisberg S (1982). _Residuals and Influence in Regression_. Chapman and Hall, London. Firth D (1991). "Statistical Theory and Modelling. In Honour of Sir David Cox, FRS." In Hinkley DV, Reid N, Snell EJ (eds.), chapter Generalized Linear Models, 55-82. Chapman and Hall, London. Hinkley DV (1975). "On power transformations to symmetry." _Biometrika_, 101-111. Kennedy Jr. WJ, Gentle JE (1980). _Statistical Computing_. Marcel Dekker. Blom G (1958). _Statistical Estimates and Transformed Beta Variables_. Wiley. Friedman JH, Stuetzle W (1981). "Projection pursuit regression." _Journal of the American Statistical Association_, 817-823. Friedman JH (1984). "SMART User's Guide." Laboratory for Computational Statistics, Stanford University. Technical Report No. 1. Friedman JH (1984). "A variable span scatterplot smoother." Laboratory for Computational Statistics, Stanford University. Technical Report No. 5. Banerjee A, Dolado JJ, Galbraith JW, Hendry DF (1993). _Cointegration, Error Correction, and the Econometric Analysis of Non-Stationary Data_. Oxford University Press, Oxford. Perron P (1988). "Trends and random walks in macroeconomic time series." _Journal of Economic Dynamics and Control_, 297-332. Wilson EB (1927). "Probable inference, the law of succession, and statistical inference." _Journal of the American Statistical Association_, 209-212. Newcombe RG (1998). "Two-Sided Confidence Intervals for the Single Proportion: Comparison of Seven Methods." _Statistics in Medicine_, 857-872. Newcombe RG (1998). "Interval Estimation for the Difference Between Independent Proportions: Comparison of Eleven Methods." _Statistics in Medicine_, 873-890. Quade D (1979). "Using weighted rankings in the analysis of complete blocks with additive block effects." _Journal of the American Statistical Association_, 680-683. Hyndman RJ, Fan Y (1996). "Sample quantiles in statistical packages." _American Statistician_, 361-365. Härdle W, Steiger W (1995). "[Algorithm AS 296] Optimal median smoothing." _Applied Statistics_, 258-264. Friedman JH, Stuetzle W (1982). "Smoothing of Scatterplots." Dep. Statistics, Stanford U. Report, Project Orion 003. Maechler M (2003). "Fast Running Medians: Finite Sample and Asymptotic Optimality." working paper available from the author. Royston P (1982). "An extension of Shapiro and Wilk's W test for normality to large samples." _Applied Statistics_, 115-124. Royston P (1982). "Algorithm AS 181: The W test for Normality." _Applied Statistics_, 176-180. Royston P (1995). "Remark AS R94: A remark on Algorithm AS 181: The W test for normality." _Applied Statistics_, 547-551. Velleman PF, Hoaglin DC (1981). _ABC of EDA (Applications, Basics, and Computing of Exploratory Data Analysis)_. Duxbury. Green PJ, Silverman BW (1994). _Nonparametric Regression and Generalized Linear Models: A Roughness Penalty Approach_. Chapman and Hall. Hastie TJ, Tibshirani RJ (1990). _Generalized Additive Models_. Chapman and Hall. Thompson D (1990). "Time series analysis of Holocene climate data." _Phil. Trans. Roy. Soc. A_, 601-616. Bloomfield P (1976). _Fourier Analysis of Time Series: An Introduction_. Wiley. Forsythe GE, Malcolm MA, Moler CB (1977). _Computer Methods for Mathematical Computations_. Prentice Hall. Fritsch FN, Carlson RE (1980). "Monotone piecewise cubic interpolation." _SIAM Journal on Numerical Analysis_, 238-246. Ratkowsky DA (1983). _Nonlinear Regression Modeling_. Dekker. Cleveland RB, Cleveland WS, McRae J, Terpenning I (1990). "STL: A Seasonal-Trend Decomposition Procedure Based on Loess." _Journal of Official Statistics_, 3-73. Harvey AC (1989). _Forecasting, Structural Time Series Models and the Kalman Filter_. Cambridge University Press. Miller RG (1981). _Simultaneous Statistical Inference_. Springer. Yandell BS (1997). _Practical Data Analysis for Designed Experiments_. Chapman & Hall. Copenhaver MD, Holland BS (1988). "Multiple comparisons of simple effects in the two-way analysis of variance with fixed effects." _Journal of Statistical Computation and Simulation_, 1-15. Hendrickson AE, White PO (1964). "Promax: a quick method for rotation to orthogonal oblique structure." _British Journal of Statistical Psychology_, 65-70. Horst P (1965). _Factor Analysis of Data Matrices_. Holt, Rinehart and Winston. Kaiser HF (1958). "The varimax criterion for analytic rotation in factor analysis." _Psychometrika_, 187-200. --- @Book{sakamoto+ishiguro+kitagawa:1986, author = {Y. Sakamoto and M. Ishiguro and Kitagawa G.}, year = {1986}, title = {Akaike Information Criterion Statistics}, publisher = {Reidel Publishing Company}, } @InBook{chambers+freeny+heiberger:1992, author = {J. M. Chambers and A. Freeny and R. M. Heiberger}, title = {Statistical Models in S}, chapter = {Analysis of variance; designed experiments}, editor = {J. M. Chambers and T. J. Hastie}, year = {1992}, publisher = {Wadsworth & Brooks/Cole}, } @InBook{hastie+pregibon:1992, author = {T. J. Hastie and D. Pregibon}, title = {Statistical Models in S}, editor = {J. M. Chambers and T. J. Hastie}, year = {1992}, publisher = {Wadsworth & Brooks/Cole}, chapter = {Generalized linear models}, } @InBook{chambers:1992:chap4, author = {J. M. Chambers}, chapter = {Linear models}, editor = {J. M. Chambers and T. J. Hastie}, year = {1992}, publisher = {Wadsworth & Brooks/Cole}, title = {Statistical Models in S}, } @InBook{bates+chambers:1992, author = {D. M. Bates and J. M. Chambers}, year = {1992}, title = {Statistical Models in S}, chapter = {Nonlinear models}, editor = {J. M. Chambers and T. J. Hastie}, publisher = {Wadsworth & Brooks/Cole}, } @InBook{chambers+hastie:1992, author = {J. M. Chambers and T. J. Hastie}, year = {1992}, title = {Statistical Models in S}, chapter = {Statistical models}, editor = {J. M. Chambers and T. J. Hastie}, publisher = {Wadsworth & Brooks/Cole}, } @InBook{chambers:1992, author = {J. M. Chambers}, year = {1992}, title = {Statistical Models in S}, chapter = {Data for models}, editor = {J. M. Chambers and T. J. Hastie}, publisher = {Wadsworth & Brooks/Cole}, } @InBook{chambers:1992, author = {W. S. Cleveland and E. Grosse and W. M. Shyu}, year = {1992}, title = {Statistical Models in S}, chapter = {Local regression}, editor = {J. M. Chambers and T. J. Hastie}, publisher = {Wadsworth & Brooks/Cole}, } @Book{hand+taylor:1987, author = {D. J. Hand and C. C. Taylor}, title = {Multivariate Analysis of Variance and Repeated Measures}, year = {1987}, publisher = {Chapman and Hall}, } @Article{bauer:1972, author = {David F. Bauer}, year = {1972}, title = {Constructing confidence sets using rank statistics}, journal = {Journal of the American Statistical Association}, edition = {67}, pages = {687--690}, } @Book{hajek+sidak+sen:1999, author = {Jaroslav Hajek and Zbynek Sidak and Pranab K. Sen}, year = {1999}, title = {Theory of Rank Tests}, address = {San Diego, London}, publisher = {Academic Press}, } @Book{brockwell+davis:1996, author = {P. J. Brockwell and R. A. Davis}, year = {1996}, title = {Introduction to Time Series and Forecasting}, publisher = {Springer}, address = {New York}, } @Article{gardner+harvey+phillips:1980, author = {G. Gardner and A. C. Harvey and G. D. A. Phillips}, year = {1980}, title = {Algorithm AS154. An algorithm for exact maximum likelihood estimation of autoregressive-moving average models by means of Kalman filtering}, journal = {Applied Statistics}, edition = {29}, pages = {311--322}, } @Book{harvey:1993, author = {A. C. Harvey}, year = {1993}, title = {Time Series Models}, edition = {2nd Edition}, publisher = {Harvester Wheatsheaf}, } @Article{harvey+mckenzie:1982, author = {A. C. Harvey and C. R. McKenzie}, year = {1982}, title = {Algorithm AS182. An algorithm for finite sample prediction from ARIMA processes}, journal = {Applied Statistics}, edition = {31}, pages = {180--187}, } @Article{jones:1980, author = {R. H. Jones}, year = {1980}, title = {Maximum likelihood fitting of ARMA models to time series with missing observations}, journal = {Technometrics}, edition = {20}, pages = {389--395}, } @Book{durbin+koopman:2001, author = {J. Durbin and S. J. Koopman}, year = {2001}, title = {Time Series Analysis by State Space Methods}, publisher = {Oxford University Press}, } @Article{gardener+harvey+phillips:1980, author = {G Gardner and A. C. Harvey and G. D. A. Phillips}, year = {1980}, title = {Algorithm AS154. An algorithm for exact maximum likelihood estimation of autoregressive-moving average models by means of Kalman filtering.}, journal = {Applied Statistics}, edition = {29}, pages = {311--322}, } @Book{brockwell+davis:1991, author = {P. J. Brockwell and R. A. Davis}, year = {1991}, title = {Time Series: Theory and Methods}, edition = {Second Edition}, publisher = {Springer}, } @Book{Luetkepohl:1991, author = {H. Luetkepohl}, year = {1991}, title = {Introduction to Multiple Time Series Analysis}, publisher = {Springer Verlag}, address = {New York}, } @Book{percival+walden:1998, author = {D. P. Percival and A. T. Walden}, year = {1998}, title = {Spectral Analysis for Physical Applications}, publisher = {Cambridge University Press}, } @Article{whittle:1963, author = {P. Whittle}, year = {1963}, title = {On the fitting of multivariate autoregressions and the approximate canonical factorization of a spectral density matrix}, journal = {Biometrika}, edition = {40}, pages = {129--134}, } @Book{scott:1992, author = {D. W. Scott}, year = {1992}, title = {Multivariate Density Estimation. Theory, Practice, and Visualization}, publisher = {Wiley}, } @Article{sheather+jones:1991, author = {S. J. Sheather and M. C. Jones}, year = {1991}, title = {A reliable data-based bandwidth selection method for kernel density estimation}, journal = {Journal of the Royal Statistical Society}, series = {B}, edition = {53}, pages = {683--690}, } @Book{silverman:1986, author = {B. W. Silverman}, year = {1986}, title = {Density Estimation}, address = {London}, publisher = {Chapman and Hall}, } @Article{bartlett:1937, author = {M. S. Bartlett}, year = {1937}, title = {Properties of sufficiency and statistical tests}, journal = {Proceedings of the Royal Society of London}, series = {A}, edition = {160}, pages = {268--282}, } @Book{abramowitz+stegun:1972, author = {M. Abramowitz and I. A. Stegun}, year = {1972}, title = {Handbook of Mathematical Functions}, address = {New York}, publisher = {Dover}, } @Book{johnson+balakrishnan:1995, author = {N. L. Johnson and S. Kotz and N. Balakrishnan}, year = {1995}, title = {Continuous Univariate Distributions}, publisher = {Wiley}, address = {New York}, } @Article{clopper+pearson:1934, author = {C. J. Clopper and E. S. Pearson}, year = {1934}, title = {The use of confidence or fiducial limits illustrated in the case of the binomial}, journal = {Biometrika}, edition = {26}, pages = {404--413}, } @Book{conover:1971, author = {William J. Conover}, year = {1971}, title = {Practical nonparametric statistics}, address = {New York}, publisher = {John Wiley & Sons}, } @Book{hollander+wolfe:1973, author = {Myles Hollander and Douglas A. Wolfe}, year = {1973}, title = {Nonparametric Statistical Methods}, address = {New York}, publisher = {John Wiley & Sons}, } @Article{gabriel:1971, author = {K. R. Gabriel}, year = {1971}, title = {The biplot graphical display of matrices with applications to principal component analysis}, journal = {Biometrika}, edition = {58}, pages = {453--467}, } @Article{gabriel+odoroff:1990, author = {K. R. Gabriel and C. L. Odoroff}, year = {1990}, title = {Biplots in biomedical research}, journal = {Statistics in Medicine}, edition = {9}, pages = {469--485}, } @Book{gower+hand:1996, author = {J.C. Gower and D. J. Hand}, year = {1996}, title = {Biplots}, publisher = {Chapman & Hall}, } @Article{diaconis+mosteller:1989, author = {P. Diaconis and Mosteller F.}, year = {1989}, title = {Methods for studying coincidences}, journal = {Journal of the American Statistical Association}, edition = {84}, pages = {853-861}, } @Article{box+pierce:1970, author = {G. E. P. Box and D. A. Pierce}, year = {1970}, title = {Distribution of residual correlations in autoregressive-integrated moving average time series models}, journal = {Journal of the American Statistical Association}, edition = {65}, pages = {1509--1526}, } @Article{ljung+boc:1978, author = {G. M. Ljung and G. E. P. Box}, year = {1978}, title = {On a measure of lack of fit in time series models}, journal = {Biometrika}, edition = {65}, pages = {297--303}, } @Article{hotelling:1936, author = {Hotelling H.}, year = {1936}, title = {Relations between two sets of variables}, journal = {Biometrika}, edition = {28}, pages = {321--327}, } @Book{seber:1984, author = {G. A. F. Seber}, year = {1984}, title = {Multivariate Observations}, address = {New York}, publisher = {Wiley}, } @Article{hope:1968, author = {A. C. A. Hope}, year = {1968}, title = {A simplified Monte Carlo significance test procedure}, journal = {Journal of the Royal Statistical Society}, series = {B}, edition = {30}, pages = {582--598}, } @Article{patefield:1981, author = {W. M. Patefield}, year = {1981}, title = {Algorithm AS159. An efficient method of generating r x c tables with given row and column totals}, journal = {Applied Statistics}, edition = {30}, pages = {91--97}, } @Article{cailliez:1983, author = {F. Cailliez}, year = {1983}, title = {The analytical solution of the additive constant problem}, journal = {Psychometrika}, edition = {48}, pages = {343--349}, } @Book{cox+cox:1994, author = {T. F. Cox and M. A. A. Cox}, year = {1994}, title = {Multidimensional Scaling}, publisher = {Chapman and Hall}, } @Article{gower:1966, author = {J. C. Gower}, year = {1966}, title = {Some distance properties of latent root and vector methods used in multivariate analysis}, journal = {Biometrika}, edition = {53}, pages = {325--328}, } @Book{mardia+kent+bibby:1979, author = {K. V. Mardia and J. T. Kent and J. M. Bibby}, year = {1979}, address = {London}, publisher = {Academic Press}, title = {Multivariate Analysis}, } @Book{torgerson:1958, author = {W. S. Torgerson}, year = {1958}, title = {Theory and Methods of Scaling}, address = {New York}, publisher = {Wiley}, } @Book{lange:2001, author = {K. Lange}, title = {Numerical Analysis for Statisticians}, publisher = {Springer}, year = {2001}, } @Book{brillinger:1981, author = {D. R. Brillinger}, year = {1981}, title = {Time Series: Data Analysis and Theory}, edition = {Second Edition}, address = {San Francisco}, publisher = {Holden-Day}, } @Book{sneath+sokal:1973, author = {P.H.A. Sneath and R.R. Sokal}, year = {1973}, title = {Numerical Taxonomy: The Principles and Practice of Numerical Classification}, publisher = {Freeman}, address = {San Francisco}, } @Article{best+roberts:1975, author = {D. J. Best and D. E. Roberts}, year = {1975}, title = {Algorithm AS 89: The Upper Tail Probabilities of Spearman's \eqn{\rho}{rho}}, journal = {Applied Statistics}, edition = {24}, pages = {377--379}, } @Book{kendall+stuart:1983, author = {M. Kendall and A. Stuart}, year = {1983}, title = {The Advanced Theory of Statistics}, volume = {3}, publisher = {Griffin}, pages = {410--414}, } @Article{griewank+corliss:1991, author = {A. Griewank and G. F. Corliss}, year = {1991}, title = {Automatic Differentiation of Algorithms: Theory, Implementation, and Application}, journal = {SIAM proceedings}, address = {Philadelphia}, } @Book{borg+groenen:1997, author = {I. Borg and P. Groenen}, year = {1997}, title = {Modern Multidimensional Scaling. Theory and Applications}, publisher = {Springer}, } @Book{heiberger:1989, author = {R. M. Heiberger}, year = {1989}, title = {Computation for the Analysis of Designed Experiments}, publisher = {Wiley}, } @Article{bartlett:1937, author = {M. S. Bartlett}, year = {1937}, title = {The statistical conception of mental factors}, journal = {British Journal of Psychology}, edition = {28}, pages = {97--104}, } @Article{bartlett:1938, author = {M. S. Bartlett}, year = {1938}, title = {Methods of estimating mental factors.}, journal = {Nature}, edition = {141}, pages = {609--610}, } @Book{joreskog:1963, author = {K. G. Jöreskog}, year = {1963}, title = {Statistical Estimation in Factor Analysis}, publisher = {Almqvist and Wicksell}, } @Book{lawley+maxwell:1971, author = {D. N. Lawley and A. E. Maxwell}, year = {1971}, title = {Factor Analysis as a Statistical Method}, edition = {Second edition}, publisher = {Butterworths}, } @Book{thomson:1951, author = {G. H. Thomson}, year = {1951}, title = {The Factorial Analysis of Human Ability}, publisher = {London University Press}, } @Book{mccullagh+nelder:1989, author = {McCullagh P. and J. A. Nelder}, year = {1989}, title = {Generalized Linear Models}, address = {London}, publisher = {Chapman and Hall}, } @Book{dobson:1983, author = {A. J. Dobson}, year = {1983}, title = {An Introduction to Statistical Modelling}, address = {London}, publisher = {Chapman and Hall}, } @Book{dobson:1990, author = {A. J. Dobson}, year = {1990}, title = {An Introduction to Generalized Linear Models}, address = {London}, publisher = {Chapman and Hall}, } @Book{cox+snell:1981, author = {D. R. Cox and E. J. Snell}, year = {1981}, title = {Applied Statistics; Principles and Examples}, address = {London}, publisher = {Chapman and Hall}, } @InProceedings{singleton:1979, author = {R. C. Singleton}, year = {1979}, title = {Mixed Radix Fast Fourier Transforms}, booktitle = {Programs for Digital Signal Processing}, editor = {IEEE Digital Signal Processing Committee eds}, organization = {IEEE Press}, } @Book{agresti:1990, author = {A. Agresti}, year = {1990}, title = {Categorical data analysis}, address = {New York}, publisher = {Wiley}, } @Book{agresti:2002, author = {A. Agresti}, year = {2002}, title = {Categorical data analysis}, address = {New York}, edition = {Second}, publisher = {Wiley}, } @Article{fisher:1935, author = {R. A. Fisher}, year = {1935}, title = {The logic of inductive inference}, journal = {Journal of the Royal Statistical Society}, series = {A}, edition = {98}, pages = {39--54}, } @Article{fisher:1962, author = {R. A. Fisher}, year = {1962}, title = {Confidence limits for a cross-product ratio}, journal = {Australian Journal of Statistics}, edition = {4}, pages = {41}, } @Book{fisher:1970, author = {R. A. Fisher}, year = {1970}, title = {Statistical Methods for Research Workers}, publisher = {Oliver & Boyd}, } @Article{mehta+patel:1986, author = {C. R. Mehta and N. R. Patel}, year = {1986}, title = {Algorithm 643. FEXACT: A Fortran subroutine for Fisher's exact test on unordered {r*c} contingency tables}, journal = {ACM Transactions on Mathematical Software}, edition = {12}, pages = {154--161}, } @Article{clarckson+fan+joe:1993, author = {D. B Clarkson and Y. Fan and H. Joe}, year = {1993}, title = {A Remark on Algorithm 643: FEXACT: An Algorithm for Performing Fisher's Exact Test in {r x c} Contingency Tables}, journal = {ACM Transactions on Mathematical Software}, edition = {19}, pages = {484--488}, } @Article{conover+johnson+johnson:1981, author = {William J. Conover and Mark E. Johnson and Myrle M. Johnson}, year = {1981}, title = {A comparative study of tests for homogeneity of variances, with applications to the outer continental shelf bidding data}, journal = {Technometrics}, edition = {23}, pages = {351--361}, } @Article{shea:1988, author = {B. L. Shea}, year = {1988}, title = {Algorithm AS 239, Chi-squared and incomplete Gamma integral}, journal = {Applied Statistics (JRSS C)}, edition = {37}, pages = {466--473}, } @InBook{davison+snell:1991, author = {A. C. Davison and E. J. Snell}, year = {1991}, chapter = {Residuals and diagnostics.}, title = {Statistical Theory and Modelling. In Honour of Sir David Cox, FRS}, editor = {D. V. Hinkley and N. Reid and E. J. Snell}, publisher = {Chapman & Hall}, } @Book{everitt:1974, author = {B. Everitt}, year = {1974}, title = {Cluster Analysis}, address = {London}, publisher = {Heinemann Educ. Books.}, } @Book{hartigan:1975, author = {J. A. Hartigan}, year = {1975}, title = {Clustering Algorithms}, address = {New York}, publisher = {Wiley}, } @Book{sneath+sokal:1973, author = {P. H. A. Sneath and R. R. Sokal}, year = {1973}, title = {Numerical Taxonomy}, address = {San Francisco}, publisher = {Freeman}, } @Book{anderberg:1973, author = {M. R. Anderberg}, year = {1973}, title = {Cluster Analysis for Applications}, publisher = {Academic Press}, address = {New York}, } @Book{gordon:1999, author = {A. D. Gordon}, year = {1999}, title = {Classification}, edition = {Second Edition}, address = {London}, publisher = {Chapman and Hall / CRC}, } @InProceedings{murtagh:1985, author = {F. Murtagh}, year = {1985}, title = {Multidimensional Clustering Algorithms}, booktitle = {COMPSTAT Lectures 4}, address = {Wuerzburg}, publisher = {Physica-Verlag}, } @Article{mcquitty:1966, author = {L.L. McQuitty}, year = {1966}, title = {Similarity Analysis by Reciprocal Pairs for Discrete and Continuous Data}, journal = {Educational and Psychological Measurement}, edition = {26}, pages = {825--831}, } @TechReport{holt:1957, author = {C. C. Holt}, year = {1957}, title = {Forecasting seasonals and trends by exponentially weighted moving averages}, note = {ONR Research Memorandum}, institution = {Carnigie Institute}, edition = {52}, } @Article{winters:1960, author = {P. R. Winters}, year = {1960}, title = {Forecasting sales by exponentially weighted moving averages}, journal = {Management Science}, edition = {6}, pages = {324--342}, } @Book{johnson+kotz+kemp:1992, author = {N. L. Johnson and S. Kotz and A. W. Kemp}, year = {1992}, title = {Univariate Discrete Distributions}, edition = {Second Edition}, address = {New York}, publisher = {Wiley}, } @Book{belsley+kuh+welsch:1980, author = {D. A. Belsley and E. Kuh and R. E. Welsch}, year = {1980}, title = {Regression Diagnostics}, address = {New York}, publisher = {Wiley}, } @Book{cook+weisberg:1982, author = {R. D. Cook and S. Weisberg}, year = {1982}, title = {Residuals and Influence in Regression}, address = {London}, publisher = {Chapman and Hall}, } @Article{williams:1987, author = {D. A. Williams}, year = {1987}, title = {Generalized linear model diagnostics using the deviance and single case deletions}, journal = {Applied Statistics}, edition = {36}, pages = {181--191}, } @Book{fox:1997, author = {J. Fox}, year = {1997}, title = {Applied Regression, Linear Models, and Related Methods}, publisher = {Sage}, } @Book{fox:2002, author = {J. Fox}, year = {2002}, title = {An R and S-Plus Companion to Applied Regression}, publisher = {Sage Publ.}, url = {http://www.socsci.mcmaster.ca/jfox/Books/Companion/}, } @Book{piessens+dedoncker-kapenga+uberhuber+kahaner:1983, author = {R. Piessens and E. deDoncker-Kapenga and C. Uberhuber and D. Kahaner}, year = {1983}, title = {Quadpack: a Subroutine Package for Automatic Integration}, publisher = {Springer Verlag}, } @Book{tukey:1977, author = {J. W. Tukey}, year = {1977}, title = {Exploratory Data Analysis}, address = {Reading}, publisher = {Addison-Wesley}, } @Book{barlow+bartholomew+bremner+brunk:1972, author = {R. E. Barlow and D. J. Bartholomew and J. M. Bremner and H. D. Brunk}, year = {1972}, title = {Statistical inference under order restrictions}, publisher = {Wiley}, address = {London}, } @Book{robertson+wright+dykstra:1988, author = {T. Robertson and F. T. Wright and R. L. Dykstra}, year = {1988}, title = {Order Restricted Statistical Inference}, publisher = {Wiley}, address = {New York}, } @Book{bloomfield:1976, author = {P. Bloomfield}, year = {1976}, title = {Fourier Analysis of Time Series: An Introduction}, publisher = {Wiley}, } @Book{brockwell+davis:1991, author = {P.J. Brockwell and R.A. Davis}, year = {1991}, title = {Time Series: Theory and Methods}, edition = {Second edition}, publisher = {Springer}, } @Article{forgy:1965, author = {E. W. Forgy}, year = {1965}, title = {Cluster analysis of multivariate data: efficiency vs interpretability of classifications}, journal = {Biometrics}, edition = {21}, publisher = {768--769}, } @Article{hartigan+wong:1979, author = {J. A. Hartigan and M. A. Wong}, year = {1979}, title = {A K-means clustering algorithm}, journal = {Applied Statistics}, edition = {28}, pages = {100--108}, } @TechReport{lloyd:1957, author = {S. P. Lloyd}, title = {Least squares quantization in PCM}, year = {1957}, institution = {Bell Laboratories}, } @Article{lloyd:1982, author = {S. P. Lloyd}, title = {Least squares quantization in PCM}, year = {1982}, journal = {IEEE Transactions on Information Theory}, edition = {28}, pages = {128--137}, } @InProceedings{macqueen:1967, author = {J. MacQueen}, year = {1967}, title = {Some methods for classification and analysis of multivariate observations}, booktitle = {Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability}, editor = {L. M. Le Cam & J. Neyman}, edition = {1}, pages = {281--297}, address = {Berkeley, CA}, organization = {University of California Press}, } @Article{birnbaum+tingey:1951, author = {Z. W. Birnbaum and Fred H. Tingey}, year = {1951}, title = {One-sided confidence contours for probability distribution functions}, journal = {The Annals of Mathematical Statistics}, edition = {22}, volume = {4}, pages = {592--596}, } @Book{durbin:1973, author = {J. Durbin}, year = {1973}, title = {Distribution theory for tests based on the sample distribution function}, publisher = {SIAM}, } @Article{marsaglia+tsang+wang:2003, author = {George Marsaglia and Wai Wan Tsang and Jingbo Wang}, year = {2003}, title = {Evaluating Kolmogorov's distribution}, journal = {Journal of Statistical Software}, edition = {8}, number = {18}, url = {http://www.jstatsoft.org/v08/i18/}, } @Article{wilkinson+rogers:1973, author = {G. N. Wilkinson and C. E. Rogers}, year = {1973}, title = {Symbolic descriptions of factorial models for analysis of variance}, journal = {Applied Statistics}, edition = {22}, pages = {392--9}, } @Article{harville:1974, author = {D.A. Harville}, year = {1974}, title = {Bayesian inference for variance components using only error contrasts}, journal = {Biometrika}, edition = {61}, pages = {383--385}, } @Article{haberman:1972, author = {S. J. Haberman}, year = {1972}, title = {Log-linear fit for contingency tables---Algorithm AS51}, journal = {Applied Statistics}, edition = {21}, pages = {218--225}, } @Article{cleveland:1979, author = {W. S. Cleveland}, year = {1979}, title = {Robust locally weighted regression and smoothing scatterplots}, journal = {Journal of the American Statistical Association}, edition = {74}, pages = {829--836}, } @Article{cleveland:1981, author = {W. S. Cleveland}, year = {1981}, title = {LOWESS: A program for smoothing scatterplots by robust locally weighted regression}, journal = {The American Statistician}, edition = {35}, pages = {54}, } @Book{krzanowski:1988, author = {W. J. Krzanowski}, year = {1988}, title = {Principles of Multivariate Analysis. A User's Perspective.}, publisher = {Oxford University Press}, } @Book{krzanowski+marriott:1994, author = {W. J. Krzanowski and F. H. C. Marriott}, year = {1994}, title = {Multivariate Analysis. Part I: Distributions, Ordination and Inference}, publisher = {Edward Arnold}, } @Book{anderson:1958, author = {T. W. Anderson}, year = {1958}, title = {An Introduction to Multivariate Statistical Analysis}, publisher = {Wiley}, } @Book{anderson:1994, author = {T. W. Anderson}, year = {1994}, title = {An Introduction to Multivariate Statistical Analysis}, publisher = {Wiley}, } @Article{mielke:1967, author = {Paul W. {Mielke Jr.}}, year = {1967}, title = {Note on some squared rank tests with existing ties}, journal = {Technometrics}, edition = {9}, number = {2}, pages = {312--314}, } @Book{dennis+schnabel:1983, author = {J. E. Dennis and R. B. Schnabel}, year = {1983}, title = {Numerical Methods for Unconstrained Optimization and Nonlinear Equations}, publisher = {Prentice-Hall}, address = {Englewood Cliffs, NJ}, } @Article{schnabel+koontz+weiss:1985, author = {R. B. Schnabel and J. E. Koontz and B. E. Weiss}, year = {1985}, title = {A modular system of algorithms for unconstrained minimization}, journal = {ACM Trans. Math. Software}, edition = {11}, pages = {419--440}, } @Book{bates+watts:1988, author = {D. M. Bates and D. G. Watts}, year = {1988}, title = {Nonlinear Regression Analysis and Its Applications}, publisher = {Wiley}, } @Article{welch:1951, author = {B. L. Welch}, year = {1951}, title = {On the comparison of several mean values: an alternative approach}, journal = {Biometrika}, edition = {38}, pages = {330--336}, } @Book{brent:1973, author = {R. Brent}, year = {1973}, title = {Algorithms for Minimization without Derivatives}, address = {Englewood Cliffs N.J.}, publisher = {Prentice-Hall}, } @Article{belisle:1992, author = {C. J. P. Belisle}, year = {1992}, title = {Convergence theorems for a class of simulated annealing algorithms on \eqn{R^d}{Rd}}, journal = {Journal of Applied Probability}, edition = {29}, pages = {885--895}, } @Article{byrd+nocedal+zhu:1995, author = {R. H. Byrd and P. Lu and J. Nocedal and C. Zhu}, year = {1995}, title = {A limited memory algorithm for bound constrained optimization}, journal = {SIAM J. Scientific Computing}, edition = {16}, pages = {1190--1208}, } @Article{fletcher+reeves:1964, author = {R. Fletcher and C. M. Reeves}, year = {1964}, title = {Function minimization by conjugate gradients}, journal = {Computer Journal}, edition = {7}, pages = {148--154}, } @Book{nash:1990, author = {J. C. Nash}, year = {1990}, title = {Compact Numerical Methods for Computers. Linear Algebra and Function Minimisation.}, publisher = {Adam Hilger}, } @Article{nelder+mead:1965, author = {J. A. Nelder and R. Mead}, year = {1965}, title = {A simplex algorithm for function minimization}, journal = {Computer Journal}, edition = {7}, pages = {308--313}, } @Book{nocedal+wright:1999, author = {J. Nocedal and S. J. Wright}, year = {1999}, title = {Numerical Optimization}, publisher = {Springer}, } @Article{benjamini+hochberg:1995, author = {Y. Benjamini and Y. Hochberg}, year = {1995}, title = {Controlling the false discovery rate: a practical and powerful approach to multiple testing}, journal = {Journal of the Royal Statistical Society}, series = {B}, edition = {57}, pages = {289--300}, } @Article{benjamini+yekutieli:2001, author = {Y. Benjamini and D. Yekutieli}, year = {2001}, title = {The control of the false discovery rate in multiple testing under dependency}, journal = {Annals of Statistics}, edition = {29}, pages = {1165--1188}, } @Article{holm:1979, author = {S. Holm}, year = {1979}, title = {A simple sequentially rejective multiple test procedure}, journal = {Scandinavian Journal of Statistics}, edition = {6}, pages = {65--70}, } @Article{hommel:1988, author = {G. Hommel}, year = {1988}, title = {A stagewise rejective multiple test procedure based on a modified Bonferroni test}, journal = {Biometrika}, edition = {75}, pages = {383--386}, } @Article{hochberg:1988, author = {Y. Hochberg}, year = {1988}, title = {A sharper Bonferroni procedure for multiple tests of significance}, journal = {Biometrika}, edition = {75}, pages = {800--803}, } @Article{schaffer:1995, author = {J. P. Shaffer}, year = {1995}, title = {Multiple hypothesis testing}, journal = {Annual Review of Psychology}, edition = {46}, pages = {561--576}, } @Article{sarkar:1998, author = {S. Sarkar}, year = {1998}, title = {Some probability inequalities for ordered MTP2 random variables: a proof of Simes conjecture}, journal = {Annals of Statistics}, edition = {26}, pages = {494--504}, } @Article{sarkar+chang:1997, author = {S. Sarkar and C. K. Chang}, year = {1997}, title = {Simes' method for multiple hypothesis testing with positively dependent test statistics}, journal = {Journal of the American Statistical Association}, edition = {92}, pages = {1601--1608}, } @Article{wright:1992, author = {S. P. Wright}, year = {1992}, title = {Adjusted P-values for simultaneous inference}, journal = {Biometrics}, edition = {48}, pages = {1005--1013}, } @TechReport{holt:1957, author = {C. C. Holt}, year = {1957}, title = {Forecasting seasonals and trends by exponentially weighted moving averages}, note = {ONR Research Memorandum}, institution = {Carnigie Institute 52}, } @Book{cook+weisberg:1982, author = {R. D. Cook and S. Weisberg}, year = {1982}, title = {Residuals and Influence in Regression}, address = {London}, publisher = {Chapman and Hall}, } @InBook{firth:1991, author = {D. Firth}, year = {1991}, chapter = {Generalized Linear Models}, editor = {D. V. Hinkley and N. Reid and E. J. Snell}, title = {Statistical Theory and Modelling. In Honour of Sir David Cox, FRS.}, address = {London}, publisher = {Chapman and Hall}, pages = {55-82}, } @Article{hinkley:1975, author = {D. V. Hinkley}, year = {1975}, title = {On power transformations to symmetry}, journal = {Biometrika}, edition = {62}, pages = {101--111}, } @Book{kennedy+gentle:1980, author = {W. J. {Kennedy Jr.} and J. E. Gentle}, year = {1980}, title = {Statistical Computing}, publisher = {Marcel Dekker}, } @Book{blom:1958, author = {G. Blom}, year = {1958}, title = {Statistical Estimates and Transformed Beta Variables}, publisher = {Wiley}, } @Article{friedman+stuetzle:1981, author = {J. H. Friedman and W. Stuetzle}, year = {1981}, title = {Projection pursuit regression}, journal = {Journal of the American Statistical Association}, edition = {76}, pages = {817--823}, } @TechReport{friedman:1984, author = {J. H. Friedman}, year = {1984}, title = {SMART User's Guide}, institution = {Laboratory for Computational Statistics, Stanford University}, note = {Technical Report No. 1}, } @TechReport{friedman:1984, author = {J. H. Friedman}, year = {1984}, title = {A variable span scatterplot smoother}, institution = {Laboratory for Computational Statistics, Stanford University}, note = {Technical Report No. 5}, } @Book{banerjee+dolado+galbraith+hendry:1993, author = {A. Banerjee and J. J. Dolado and J. W. Galbraith and D. F. Hendry}, year = {1993}, title = {Cointegration, Error Correction, and the Econometric Analysis of Non-Stationary Data}, publisher = {Oxford University Press}, address = {Oxford}, } @Article{perron:1988, author = {P. Perron}, year = {1988}, title = {Trends and random walks in macroeconomic time series}, journal = {Journal of Economic Dynamics and Control}, edition = {12}, pages = {297--332}, } @Article{wilson:1927, author = {E. B. Wilson}, year = {1927}, title = {Probable inference, the law of succession, and statistical inference}, journal = {Journal of the American Statistical Association}, edition = {22}, pages = {209--212}, } @Article{newcombe:1988a, author = {R. G. Newcombe}, year = {1998}, title = {Two-Sided Confidence Intervals for the Single Proportion: Comparison of Seven Methods}, journal = {Statistics in Medicine}, edition = {17}, pages = {857--872}, } @Article{newcombe:1988b, author = {R. G. Newcombe}, year = {1998}, title = {Interval Estimation for the Difference Between Independent Proportions: Comparison of Eleven Methods}, journal = {Statistics in Medicine}, edition = {17}, pages = {873--890}, } @Article{quade:1979, author = {D. Quade}, year = {1979}, title = {Using weighted rankings in the analysis of complete blocks with additive block effects}, journal = {Journal of the American Statistical Association}, edition = {74}, pages = {680--683}, } @Article{hyndman+fan:1996, author = {R. J. Hyndman and Y. Fan}, year = {1996}, title = {Sample quantiles in statistical packages}, journal = {American Statistician}, edition = {50}, pages = {361--365}, } @Article{haerdle:1995, author = {W. Härdle and W. Steiger}, year = {1995}, title = {[Algorithm AS 296] Optimal median smoothing}, journal = {Applied Statistics}, edition = {44}, pages = {258--264}, } @TechReport{friedman+stuetzle:1982, author = {Jerome H. Friedman and Werner Stuetzle}, year = {1982}, title = {Smoothing of Scatterplots}, institution = {Dep. Statistics, Stanford U.}, note = {Report, Project Orion 003}, } @Misc{maechler:2003, author = {Martin Maechler}, year = {2003}, title = {Fast Running Medians: Finite Sample and Asymptotic Optimality}, note = {working paper available from the author}, } @Article{royston:1982a, author = {Patrick Royston}, year = {1982}, title = {An extension of Shapiro and Wilk's \eqn{W} test for normality to large samples}, journal = {Applied Statistics}, edition = {31}, pages = {115--124}, } @Article{royston:1982b, author = {Patrick Royston}, year = {1982}, title = {Algorithm AS 181: The \eqn{W} test for Normality}, journal = {Applied Statistics}, edition = {31}, pages = {176--180}, } @Article{royston:1995, author = {Patrick Royston}, year = {1995}, title = {Remark AS R94: A remark on Algorithm AS 181: The \eqn{W} test for normality}, journal = {Applied Statistics}, edition = {44}, pages = {547--551}, } @Book{velleman+hoaglin:1981, author = {P. F. Velleman and D. C. Hoaglin}, year = {1981}, title = {ABC of EDA (Applications, Basics, and Computing of Exploratory Data Analysis)}, publisher = {Duxbury}, } @Book{green+silverman:1994, author = {P. J. Green and B. W. Silverman}, year = {1994}, title = {Nonparametric Regression and Generalized Linear Models: A Roughness Penalty Approach}, publisher = {Chapman and Hall}, } @Book{hastie+tibshirani:1990, author = {T. J. Hastie and R. J. Tibshirani}, year = {1990}, title = {Generalized Additive Models}, publisher = {Chapman and Hall}, } @Article{thompson:1990, author = {D.J. Thompson}, year = {1990}, title = {Time series analysis of Holocene climate data}, journal = {Phil. Trans. Roy. Soc. A}, edition = {330}, pages = {601--616}, } @Book{bloomfield:1976, author = {P. Bloomfield}, year = {1976}, title = {Fourier Analysis of Time Series: An Introduction}, publisher = {Wiley}, } @Book{forsythe+malcolm+moler:1977, author = {G. E. Forsythe and M. A. Malcolm and C. B. Moler}, year = {1977}, title = {Computer Methods for Mathematical Computations}, publisher = {Prentice Hall}, } @Article{fritsch+carlson:1980, author = {F. N. Fritsch and R. E. Carlson}, year = {1980}, title = {Monotone piecewise cubic interpolation}, journal = {SIAM Journal on Numerical Analysis}, edition = {17}, pages = {238--246}, } @Book{ratkowsky:1983, author = {David A. Ratkowsky}, year = {1983}, title = {Nonlinear Regression Modeling}, publisher = {Dekker}, } @Article{cleveland+cleveland+mcrae+terpenning:1990, author = {R. B. Cleveland and W. S. Cleveland and J.E. McRae and I. Terpenning}, year = {1990}, title = {STL: A Seasonal-Trend Decomposition Procedure Based on Loess}, journal = {Journal of Official Statistics}, edition = {6}, pages = {3--73}, } @Book{harvey:1989, author = {A. C. Harvey}, year = {1989}, title = {Forecasting, Structural Time Series Models and the Kalman Filter}, publisher = {Cambridge University Press}, } @Book{miller:1981, author = {R. G. Miller}, year = {1981}, title = {Simultaneous Statistical Inference}, publisher = {Springer}, } @Book{yandell:1997, author = {B. S. Yandell}, year = {1997}, title = {Practical Data Analysis for Designed Experiments}, publisher = {Chapman & Hall}, } @Article{copenhaver+holland:1988, author = {Margaret Diponzio Copenhaver and Burt S. Holland}, year = {1988}, title = {Multiple comparisons of simple effects in the two-way analysis of variance with fixed effects}, journal = {Journal of Statistical Computation and Simulation}, edition = {30}, pages = {1--15}, } @Article{hendrickson+white:1964, author = {A. E. Hendrickson and P. O. White}, year = {1964}, title = {Promax: a quick method for rotation to orthogonal oblique structure}, journal = {British Journal of Statistical Psychology}, edition = {17}, pages = {65--70}, } @Book{horst:1965, author = {P. Horst}, year = {1965}, title = {Factor Analysis of Data Matrices}, publisher = {Holt, Rinehart and Winston}, } @Article{kaiser:1958, author = {H. F. Kaiser}, year = {1958}, title = {The varimax criterion for analytic rotation in factor analysis}, journal = {Psychometrika}, edition = {23}, pages = {187--200}, } # Read stats4 Schwarz G (1978). "Estimating the Dimension of a Model." _Annals of Statistics_, 461-464. --- @Article{schwarz:1978, author = {G. Schwarz}, year = {1978}, title = {Estimating the Dimension of a Model}, journal = {Annals of Statistics}, edition = {6}, pages = {461--464}, } # Read tools Murdoch D (2009). "Parsing Rd files." . --- @Misc{murdoch:2009, author = {Duncan Murdoch}, title = {Parsing Rd files}, year = {2009}, url = {http://developer.r-project.org/parseRd.pdf}, } # Read utils Nijenhuis A, Wilf H (1978). _Combinatorial Algorithms for Computers and Calculators_. Academic Press, New York. Robbins KA, Robbins S (1995). _Practical UNIX Programming_, 1st edition. Prentice Hall PTR. ISBN 0134437063. Leisch F (2008). _Sweave User Manual_. . --- @Book{nijenhuis+wilf:1978, author = {A. Nijenhuis and H.S. Wilf}, year = {1978}, title = {Combinatorial Algorithms for Computers and Calculators}, publisher = {Academic Press}, address = {New York}, } @Book{robbins+robbins:1995, author = {Kay A. Robbins and Steven Robbins}, edition = {1st}, howpublished = {Hardcover}, isbn = {0134437063}, keywords = {programming, unix}, month = {November}, publisher = {Prentice Hall PTR}, title = {Practical UNIX Programming}, year = {1995}, } @Manual{leisch:2008, author = {Friedrich Leisch}, title = {Sweave User Manual}, year = {2008}, url = {http://www.stat.uni-muenchen.de/~leisch/Sweave}, } bibtex/tests/testthat/_snaps/multiline.md0000644000176200001440000000241114313223106020331 0ustar liggesusers# Multiline from file @Article{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System. Multiline entry}, journal = {\mbox{G-Animal's} Journal}, year = {1986}, volume = {41}, number = {7}, pages = {73+}, month = {jul}, note = {This is a full ARTICLE entry}, abstract = {This is a multiline with a concat string}, } # Multiline string @TechReport{Golub:1976:RDLb, author = {G. H. Golub and Virginia Klema and G. W. {Stewart III}}, title = {Rank Degeneracy and Least Squares Problems}, type = {Report}, number = {TR-751}, institution = {Department of Computer Science, University of Maryland}, pages = {????}, month = {????}, year = {1976}, bibdate = {Thu May 29 16:12:45 2014}, bibsource = {http://www.math.utah.edu/pub/bibnet/authors/g/golub-gene-h.bib; http://www.math.utah.edu/pub/bibnet/authors/s/stewart-gilbert-w.bib}, acknowledgement = {ack-nhfb}, gwsnumber = {N6}, xxnote = {Check: is this the same as Golub:1976:RDLa? If so, which report number is correct??}, } bibtex/tests/testthat/_snaps/standard-entries.md0000644000176200001440000001210514313223106021577 0ustar liggesusers# Test article-full @Article{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = {1986}, volume = {41}, number = {7}, pages = {73+}, month = {jul}, note = {This is a full ARTICLE entry}, } # Test book-full @Book{book-full, author = {Donald E. Knuth}, title = {Seminumerical Algorithms}, volume = {2}, series = {The Art of Computer Programming}, publisher = {Addison-Wesley}, address = {Reading, Massachusetts}, edition = {Second}, month = {10~jan}, year = {{\noopsort{1973c}}1981}, note = {This is a full BOOK entry}, } # Test booklet-full @Booklet{booklet-full, author = {Jill C. Knvth}, title = {The Programming of Computer Art}, howpublished = {Vernier Art Center}, address = {Stanford, California}, month = {feb}, year = {1988}, note = {This is a full BOOKLET entry}, } # Test inbook-full @InBook{inbook-full, author = {Donald E. Knuth}, title = {Fundamental Algorithms}, volume = {1}, series = {The Art of Computer Programming}, publisher = {Addison-Wesley}, address = {Reading, Massachusetts}, edition = {Second}, month = {10~jan}, year = {{\noopsort{1973b}}1973}, type = {Section}, chapter = {1.2}, pages = {10--119}, note = {This is a full INBOOK entry}, } # Test incollection-full @InCollection{incollection-full, author = {Daniel D. Lincoll}, title = {Semigroups of Recurrences}, editor = {David J. Lipcoll and D. H. Lawrie and A. H. Sameh}, booktitle = {High Speed Computer and Algorithm Organization}, number = {23}, series = {Fast Computers}, chapter = {3}, type = {Part}, pages = {179--183}, publisher = {Academic Press}, address = {New York}, edition = {Third}, month = {sep}, year = {1977}, note = {This is a full INCOLLECTION entry}, } # Test inproceedings-full @InProceedings{inproceedings-full, author = {Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis}, title = {On Notions of Information Transfer in {VLSI} Circuits}, editor = {Wizard V. Oz and Mihalis Yannakakis}, booktitle = {Proc. Fifteenth Annual ACM}, number = {17}, series = {All ACM Conferences}, pages = {133--139}, month = {mar}, year = {1983}, address = {Boston}, organization = {ACM}, publisher = {Academic Press}, note = {This is a full INPROCEDINGS entry}, } # Test manual-full @Manual{manual-full, author = {Larry Manmaker}, title = {The Definitive Computer Manual}, organization = {Chips-R-Us}, address = {Silicon Valley}, edition = {Silver}, month = {apr-may}, year = {1986}, note = {This is a full MANUAL entry}, } # Test mastersthesis-full @MastersThesis{mastersthesis-full, author = {Édouard Masterly}, title = {Mastering Thesis Writing}, school = {Stanford University}, type = {Master's project}, address = {English Department}, month = {jun-aug}, year = {1988}, note = {This is a full MASTERSTHESIS entry}, } # Test misc-full @Misc{misc-full, author = {Joe-Bob Missilany}, title = {Handing out random pamphlets in airports}, howpublished = {Handed out at O'Hare}, month = {oct}, year = {1984}, note = {This is a full MISC entry}, } # Test phdthesis-full @PhdThesis{phdthesis-full, author = {F. Phidias Phony-Baloney}, title = {Fighting Fire with Fire: Festooning {F}rench Phrases}, school = {Fanstord University}, type = {{PhD} Dissertation}, address = {Department of French}, month = {jun-aug}, year = {1988}, note = {This is a full PHDTHESIS entry}, } # Test proceedings-full @Proceedings{proceedings-full, editor = {Wizard V. Oz and Mihalis Yannakakis}, title = {Proc. Fifteenth AnnualSTOC}, number = {17}, series = {All ACM Conferences}, month = {mar}, year = {1983}, address = {Boston}, organization = {ACM}, publisher = {Academic Press}, note = {This is a full PROCEEDINGS entry}, } # Test techreport-full @TechReport{techreport-full, author = {Tom Térrific}, title = {An {$O(n \log n / \! \log\log n)$} Sorting Algorithm}, institution = {Fanstord University}, type = {Wishful Research Result}, number = {7}, address = {Computer Science Department, Fanstord, California}, month = {oct}, year = {1988}, note = {This is a full TECHREPORT entry}, } # Test unpublished-full @Unpublished{unpublished-full, author = {Ulrich Ünderwood and Ned Ñet and Paul \=Pot}, title = {Lower Bounds for Wishful Research Results}, month = {nov, dec}, year = {1988}, note = {Talk at Fanstord University (this is a full UNPUBLISHED entry)}, } bibtex/tests/testthat/_snaps/full_xampl.md0000644000176200001440000004102314313223106020474 0ustar liggesusers# Full xampl on string Code names(out) Output [1] "article-minimal" "article-full" "inbook-minimal" [4] "inbook-full" "inbook-crossref" "book-minimal" [7] "book-full" "book-crossref" "whole-set" [10] "booklet-minimal" "booklet-full" "incollection-minimal" [13] "incollection-full" "incollection-crossref" "whole-collection" [16] "manual-minimal" "manual-full" "mastersthesis-minimal" [19] "mastersthesis-full" "misc-minimal" "misc-full" [22] "inproceedings-minimal" "inproceedings-full" "inproceedings-crossref" [25] "proceedings-minimal" "proceedings-full" "whole-proceedings" [28] "phdthesis-minimal" "phdthesis-full" "techreport-minimal" [31] "techreport-full" "unpublished-minimal" "unpublished-full" [34] "random-note-crossref" --- Aamport LA (1986). "The Gnats and Gnus Document Preparation System." _\mbox{G-Animal's} Journal_. Aamport LA (1986). "The Gnats and Gnus Document Preparation System." _\mbox{G-Animal's} Journal_, *41*(7), 73+. This is a full ARTICLE entry. Knuth DE (\noopsort{1973b}1973). "Fundamental Algorithms." In chapter 1.2. Addison-Wesley. Knuth DE (\noopsort{1973b}1973). "Fundamental Algorithms." In volume 1 series The Art of Computer Programming, chapter 1.2, Second edition, 10-119. Addison-Wesley, Reading, Massachusetts. This is a full INBOOK entry. Knuth DE (\noopsort{1973b}1973). "Fundamental Algorithms." In volume 1 series The Art of Computer Programming, chapter 1.2, Second edition. Addison-Wesley. This is a cross-referencing INBOOK entry. Knuth DE (\noopsort{1973c}1981). _Seminumerical Algorithms_. Addison-Wesley. Knuth DE (\noopsort{1973c}1981). _Seminumerical Algorithms_, volume 2 series The Art of Computer Programming, Second edition. Addison-Wesley, Reading, Massachusetts. This is a full BOOK entry. Knuth DE (\noopsort{1973c}1981). _Seminumerical Algorithms_, volume 2 series The Art of Computer Programming, Second edition. Addison-Wesley. This is a cross-referencing BOOK entry. Knuth DE (\noopsort{1973a}\switchargs{-90}{1968}). _The Art of Computer Programming_, series Four volumes. Addison-Wesley. Seven volumes planned (this is a cross-referenced set of BOOKs). bibtype Booklet not implemented bibtype Booklet not implemented Lincoll DD (1977). "Semigroups of Recurrences." In _High Speed Computer and Algorithm Organization_. Academic Press. Lincoll DD (1977). "Semigroups of Recurrences." In Lipcoll DJ, Lawrie DH, Sameh AH (eds.), _High Speed Computer and Algorithm Organization_, number 23 series Fast Computers, Third edition, 179-183. Academic Press, New York. This is a full INCOLLECTION entry. Lincoll DD (1977). "Semigroups of Recurrences." In Lipcoll DJ, Lawrie DH, Sameh AH (eds.), _High Speed Computer and Algorithm Organization_, number 23 series Fast Computers, Third edition, 179-183. Academic Press, New York. This is a cross-referencing INCOLLECTION entry. Lipcoll DJ, Lawrie DH, Sameh AH (eds.) (1977). _High Speed Computer and Algorithm Organization_, number 23 series Fast Computers, Third edition. Academic Press, New York. This is a cross-referenced BOOK (collection) entry. (????). _The Definitive Computer Manual_. Manmaker L (1986). _The Definitive Computer Manual_, Silver edition. Chips-R-Us, Silicon Valley. This is a full MANUAL entry. Masterly É (1988). _Mastering Thesis Writing_. Master's thesis, Stanford University. Masterly É (1988). _Mastering Thesis Writing_. Master's project, Stanford University, English Department. This is a full MASTERSTHESIS entry. (????). This is a minimal MISC entry. Missilany J (1984). "Handing out random pamphlets in airports." Handed out at O'Hare. This is a full MISC entry. Oaho AV, Ullman JD, Yannakakis M (1983). "On Notions of Information Transfer in VLSI Circuits." In _Proc. Fifteenth Annual ACM Symposium on the Theory of Computing_. Oaho AV, Ullman JD, Yannakakis M (1983). "On Notions of Information Transfer in VLSI Circuits." In Oz WV, Yannakakis M (eds.), _Proc. Fifteenth Annual ACM Symposium on the Theory of Computing_, number 17 series All ACM Conferences, 133-139. The OX Association for Computing Machinery, Boston. This is a full INPROCEDINGS entry. Oaho AV, Ullman JD, Yannakakis M (1983). "On Notions of Information Transfer in VLSI Circuits." In _Proc. Fifteenth Annual ACM Symposium on the Theory of Computing_, 133-139. The OX Association for Computing Machinery, Boston. This is a cross-referencing INPROCEEDINGS entry. Anonymous (ed.) (1983). _Proc. Fifteenth Annual Symposium on the Theory of Computing_. Oz WV, Yannakakis M (eds.) (1983). _Proc. Fifteenth Annual Symposium on the Theory of Computing_, number 17 series All ACM Conferences. The OX Association for Computing Machinery, Boston. This is a full PROCEEDINGS entry. Anonymous (ed.) (1983). _Proc. Fifteenth Annual Symposium on the Theory of Computing_. The OX Association for Computing Machinery, Boston. This is a cross-referenced PROCEEDINGS. Phony-Baloney FP (1988). _Fighting Fire with Fire: Festooning French Phrases_. Ph.D. thesis, Fanstord University. Phony-Baloney FP (1988). _Fighting Fire with Fire: Festooning French Phrases_. PhD Dissertation, Fanstord University, Department of French. This is a full PHDTHESIS entry. Terrific T (1988). "An $O(n \logn / \! \log\logn)$ Sorting Algorithm." Fanstord University. Térrific T (1988). "An $O(n \logn / \! \log\logn)$ Sorting Algorithm." Wishful Research Result 7, Fanstord University, Computer Science Department, Fanstord, California. This is a full TECHREPORT entry. Ünderwood U, Ñet N, \=Pot P (????). "Lower Bounds for Wishful Research Results." Talk at Fanstord University (this is a minimal UNPUBLISHED entry). Ünderwood U, Ñet N, \=Pot P (1988). "Lower Bounds for Wishful Research Results." Talk at Fanstord University (this is a full UNPUBLISHED entry). (????). Volume~2 is listed under Knuth book-full. # Full xampl on bibtex @Article{article-minimal, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = {1986}, } @Article{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = {1986}, volume = {41}, number = {7}, pages = {73+}, month = {jul}, note = {This is a full ARTICLE entry}, } @InBook{inbook-minimal, author = {Donald E. Knuth}, title = {Fundamental Algorithms}, publisher = {Addison-Wesley}, year = {{\noopsort{1973b}}1973}, chapter = {1.2}, } @InBook{inbook-full, author = {Donald E. Knuth}, title = {Fundamental Algorithms}, volume = {1}, series = {The Art of Computer Programming}, publisher = {Addison-Wesley}, address = {Reading, Massachusetts}, edition = {Second}, month = {10~jan}, year = {{\noopsort{1973b}}1973}, type = {Section}, chapter = {1.2}, pages = {10--119}, note = {This is a full INBOOK entry}, } @InBook{inbook-crossref, crossref = {whole-set}, title = {Fundamental Algorithms}, volume = {1}, series = {The Art of Computer Programming}, edition = {Second}, year = {{\noopsort{1973b}}1973}, type = {Section}, chapter = {1.2}, note = {This is a cross-referencing INBOOK entry}, } @Book{book-minimal, author = {Donald E. Knuth}, title = {Seminumerical Algorithms}, publisher = {Addison-Wesley}, year = {{\noopsort{1973c}}1981}, } @Book{book-full, author = {Donald E. Knuth}, title = {Seminumerical Algorithms}, volume = {2}, series = {The Art of Computer Programming}, publisher = {Addison-Wesley}, address = {Reading, Massachusetts}, edition = {Second}, month = {10~jan}, year = {{\noopsort{1973c}}1981}, note = {This is a full BOOK entry}, } @Book{book-crossref, crossref = {whole-set}, title = {Seminumerical Algorithms}, volume = {2}, series = {The Art of Computer Programming}, edition = {Second}, year = {{\noopsort{1973c}}1981}, note = {This is a cross-referencing BOOK entry}, } @Book{whole-set, author = {Donald E. Knuth}, publisher = {Addison-Wesley}, title = {The Art of Computer Programming}, series = {Four volumes}, year = {{\noopsort{1973a}}{\switchargs{--90}{1968}}}, note = {Seven volumes planned (this is a cross-referenced set of BOOKs)}, } @Booklet{booklet-minimal, key = {Kn{\printfirst{v}{1987}}}, title = {The Programming of Computer Art}, } @Booklet{booklet-full, author = {Jill C. Knvth}, title = {The Programming of Computer Art}, howpublished = {Vernier Art Center}, address = {Stanford, California}, month = {feb}, year = {1988}, note = {This is a full BOOKLET entry}, } @InCollection{incollection-minimal, author = {Daniel D. Lincoll}, title = {Semigroups of Recurrences}, booktitle = {High Speed Computer and Algorithm Organization}, publisher = {Academic Press}, year = {1977}, } @InCollection{incollection-full, author = {Daniel D. Lincoll}, title = {Semigroups of Recurrences}, editor = {David J. Lipcoll and D. H. Lawrie and A. H. Sameh}, booktitle = {High Speed Computer and Algorithm Organization}, number = {23}, series = {Fast Computers}, chapter = {3}, type = {Part}, pages = {179--183}, publisher = {Academic Press}, address = {New York}, edition = {Third}, month = {sep}, year = {1977}, note = {This is a full INCOLLECTION entry}, } @InCollection{incollection-crossref, crossref = {whole-collection}, author = {Daniel D. Lincoll}, title = {Semigroups of Recurrences}, pages = {179--183}, note = {This is a cross-referencing INCOLLECTION entry}, } @Book{whole-collection, editor = {David J. Lipcoll and D. H. Lawrie and A. H. Sameh}, title = {High Speed Computer and Algorithm Organization}, booktitle = {High Speed Computer and Algorithm Organization}, number = {23}, series = {Fast Computers}, publisher = {Academic Press}, address = {New York}, edition = {Third}, month = {sep}, year = {1977}, note = {This is a cross-referenced BOOK (collection) entry}, } @Manual{manual-minimal, key = {Manmaker}, title = {The Definitive Computer Manual}, } @Manual{manual-full, author = {Larry Manmaker}, title = {The Definitive Computer Manual}, organization = {Chips-R-Us}, address = {Silicon Valley}, edition = {Silver}, month = {apr-may}, year = {1986}, note = {This is a full MANUAL entry}, } @MastersThesis{mastersthesis-minimal, author = {Édouard Masterly}, title = {Mastering Thesis Writing}, school = {Stanford University}, year = {1988}, } @MastersThesis{mastersthesis-full, author = {Édouard Masterly}, title = {Mastering Thesis Writing}, school = {Stanford University}, type = {Master's project}, address = {English Department}, month = {jun-aug}, year = {1988}, note = {This is a full MASTERSTHESIS entry}, } @Misc{misc-minimal, key = {Missilany}, note = {This is a minimal MISC entry}, } @Misc{misc-full, author = {Joe-Bob Missilany}, title = {Handing out random pamphlets in airports}, howpublished = {Handed out at O'Hare}, month = {oct}, year = {1984}, note = {This is a full MISC entry}, } @InProceedings{inproceedings-minimal, author = {Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis}, title = {On Notions of Information Transfer in {VLSI} Circuits}, booktitle = {Proc. Fifteenth Annual ACM Symposium on the Theory of Computing}, year = {1983}, } @InProceedings{inproceedings-full, author = {Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis}, title = {On Notions of Information Transfer in {VLSI} Circuits}, editor = {Wizard V. Oz and Mihalis Yannakakis}, booktitle = {Proc. Fifteenth Annual ACM Symposium on the Theory of Computing}, number = {17}, series = {All ACM Conferences}, pages = {133--139}, month = {mar}, year = {1983}, address = {Boston}, organization = {The OX Association for Computing Machinery}, publisher = {Academic Press}, note = {This is a full INPROCEDINGS entry}, } @InProceedings{inproceedings-crossref, crossref = {whole-proceedings}, author = {Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis}, title = {On Notions of Information Transfer in {VLSI} Circuits}, pages = {133--139}, note = {This is a cross-referencing INPROCEEDINGS entry}, } @Proceedings{proceedings-minimal, key = {OX{\singleletter{stoc}}}, title = {Proc. Fifteenth Annual Symposium on the Theory of Computing}, year = {1983}, } @Proceedings{proceedings-full, editor = {Wizard V. Oz and Mihalis Yannakakis}, title = {Proc. Fifteenth Annual Symposium on the Theory of Computing}, number = {17}, series = {All ACM Conferences}, month = {mar}, year = {1983}, address = {Boston}, organization = {The OX Association for Computing Machinery}, publisher = {Academic Press}, note = {This is a full PROCEEDINGS entry}, } @Proceedings{whole-proceedings, key = {OX{\singleletter{stoc}}}, organization = {The OX Association for Computing Machinery}, title = {Proc. Fifteenth Annual Symposium on the Theory of Computing}, address = {Boston}, year = {1983}, booktitle = {Proc. Fifteenth Annual ACM Symposium on the Theory of Computing}, note = {This is a cross-referenced PROCEEDINGS}, } @PhdThesis{phdthesis-minimal, author = {F. Phidias Phony-Baloney}, title = {Fighting Fire with Fire: Festooning {F}rench Phrases}, school = {Fanstord University}, year = {1988}, } @PhdThesis{phdthesis-full, author = {F. Phidias Phony-Baloney}, title = {Fighting Fire with Fire: Festooning {F}rench Phrases}, school = {Fanstord University}, type = {{PhD} Dissertation}, address = {Department of French}, month = {jun-aug}, year = {1988}, note = {This is a full PHDTHESIS entry}, } @TechReport{techreport-minimal, author = {Tom Terrific}, title = {An {$O(n \log n / \! \log\log n)$} Sorting Algorithm}, institution = {Fanstord University}, year = {1988}, } @TechReport{techreport-full, author = {Tom Térrific}, title = {An {$O(n \log n / \! \log\log n)$} Sorting Algorithm}, institution = {Fanstord University}, type = {Wishful Research Result}, number = {7}, address = {Computer Science Department, Fanstord, California}, month = {oct}, year = {1988}, note = {This is a full TECHREPORT entry}, } @Unpublished{unpublished-minimal, author = {Ulrich Ünderwood and Ned Ñet and Paul \=Pot}, title = {Lower Bounds for Wishful Research Results}, note = {Talk at Fanstord University (this is a minimal UNPUBLISHED entry)}, } @Unpublished{unpublished-full, author = {Ulrich Ünderwood and Ned Ñet and Paul \=Pot}, title = {Lower Bounds for Wishful Research Results}, month = {nov, dec}, year = {1988}, note = {Talk at Fanstord University (this is a full UNPUBLISHED entry)}, } @Misc{random-note-crossref, key = {Volume-2}, note = {Volume~2 is listed under Knuth \cite{book-full}}, } bibtex/tests/testthat/_snaps/utils.md0000644000176200001440000000153514313223106017475 0ustar liggesusers# parse strings structure(list(name_string = c("STOC-key", "ACM", "STOC"), value = c("OX{\\singleletter{stoc}}", "The OX Association for Computing Machinery", "The OX Association for Computing Machinery Symposium on the Theory of Computing" )), row.names = c(NA, 3L), class = "data.frame") # parse single entry structure(c(author = "Nijenhuis, A. and Wilf, H.S.", year = "1978", title = "Combinatorial Algorithms for Computers and Calculators", publisher = "Academic Press", address = "New York"), entry = "book", key = "nijenhuis+wilf:1978") # replace and concat [1] "CIA means Central Intelligence Agency" --- [1] "Central Intelligence Agency can be abbreviated as CIA, and FBI stands for Federal Bureau of Investigation" --- [1] "\"Central Intelligence Agency\"" --- [1] "\"CIA\"" --- [1] "{CIA}" bibtex/tests/testthat/_snaps/read.md0000644000176200001440000000060414313223106017244 0ustar liggesusers# Test entry with non standard fields Van Damme J (2016). "Article title." _Newspaper name_. --- @Article{newspaper, author = {Jean-Claude {Van Damme}}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, hyphen-field = {This one}, under_field = {This one}, double:field = {This one}, year = {2016}, } bibtex/tests/testthat/test-utils.R0000644000176200001440000000407214313223106016767 0ustar liggesuserstest_that("parse strings", { map_string <- data.frame( entry = c("@STRING", "@STRING", "@STRING") ) stringlines <- c( "@STRING{STOC-key = \"OX{\\singleletter{stoc}}\"}", "@STRING{ACM = \"The OX Association for Computing Machinery\"}", "@STRING{STOC = ACM # \" Symposium on the Theory of Computing\"}" ) expect_snapshot_output( dput( parse_strings(map_string, stringlines) ) ) }) test_that("parse single entry", { lines <- readLines(system.file("bib", "utils.bib", package = "bibtex")) parsed <- parse_single_entry( init = 2, end = 8, lines = lines, map_string_end = NULL ) expect_snapshot_output(dput(parsed)) }) test_that("replace and concat", { x <- "\"CIA means \" # CIA" string <- c("CIA", "FBI") value <- c("Central Intelligence Agency", "Federal Bureau of Investigation") # Replace and concat expect_snapshot_output( replace_string_and_concat(x, string, value) ) x_alt <- "CIA # \" can be abbreviated as CIA, and FBI stands for \" # FBI" expect_snapshot_output( replace_string_and_concat(x_alt, string, value) ) # Full replacement x2 <- "CIA" expect_snapshot_output( replace_string_and_concat(x2, string, value) ) # No replacement x3 <- "\"CIA\"" expect_snapshot_output( replace_string_and_concat(x3, string, value) ) # Protected x4 <- "{CIA}" expect_snapshot_output( replace_string_and_concat(x4, string, value) ) }) test_that("Check balanced braces", { error <- paste0( "@misc{murdoch:2010, author = {Duncan Murdoch}", "title = {I {am} unbalanced", "year = 2010", "url = {http://developer.r-project.org/parseRd.pdf}}" ) err <- expect_message(expect_error(check_balanced_braces(error, 3))) expect_equal( err$message, "Error: Unbalanced braces on entry (line 3). Invalid .bib file\n" ) ok <- paste0( "@misc{murdoch:2010, author = {Duncan Murdoch}", "title = {I {am} balanced}", "year = 2010", "url = {http://developer.r-project.org/parseRd.pdf}}" ) expect_silent(check_balanced_braces(ok, 3)) }) bibtex/tests/testthat/test-deprecated.R0000644000176200001440000000134514313223106017727 0ustar liggesuserstest_that("srcfile deprecation message", { f <- file.path(system.file("bib", "xampl_mod.bib", package = "bibtex")) m <- expect_message(do_read_bib(file = f, srcfile = f)) expect_equal(m$message, "'srcfile' argument is deprecated.\n") }) test_that("header deprecation message", { f <- file.path(system.file("bib", "xampl_single.bib", package = "bibtex")) m <- expect_message(read.bib(file = f, header = "test")) expect_equal(m$message, "'header' argument is deprecated.\n") }) test_that("footer deprecation message", { f <- file.path(system.file("bib", "xampl_single.bib", package = "bibtex")) m <- expect_message(read.bib(file = f, footer = "test")) expect_equal(m$message, "'footer' argument is deprecated.\n") }) bibtex/tests/testthat/test-multiline.R0000644000176200001440000000053114313223106017625 0ustar liggesuserstest_that("Multiline from file", { file <- system.file("bib/xampl_multiline.bib", package = "bibtex") out <- read.bib(file) expect_snapshot_output(toBibtex(out)) }) test_that("Multiline string", { file <- system.file("bib/multiline_string.bib", package = "bibtex") out <- read.bib(file) expect_snapshot_output(toBibtex(out)) }) bibtex/tests/testthat/test-fatal-errors.R0000644000176200001440000000053714313223106020232 0ustar liggesuserstest_that("Unbalanced braces", { file <- system.file("bib/unbalanced_braces.bib", package = "bibtex") expect_error(read.bib(file), "Invalid bib file") }) test_that("Unable to recover after encountering two consecutive TOKEN_LBRACE { 42", { file <- system.file("bib/unable_recover_42.bib", package = "bibtex") expect_error(read.bib(file)) }) bibtex/tests/testthat/test-authors.R0000644000176200001440000000333014313223106017310 0ustar liggesuserstest_that("Smith, Jr., John", { authors <- "Smith, Jr., John" parsed <- bibtex:::ArrangeAuthors(authors) expect_equal(length(parsed$family), 2L) }) test_that("Smith, Jr., John and Mary {Tyler Moore}", { authors <- "Smith, Jr., John and Mary {Tyler Moore}" parsed <- bibtex:::ArrangeAuthors(authors) expect_match(parsed[[2]]$family, "Tyler Moore") expect_snapshot_output(dput(parsed)) }) test_that("Smith, Jr., John and {MATLAB, Inc.}", { authors <- "Smith, Jr., John and {MATLAB, Inc.}" parsed <- bibtex:::ArrangeAuthors(authors) expect_match(parsed[[2]]$family, "MATLAB, Inc.") expect_equal(length(unlist(parsed$family[1])), 2L) expect_snapshot_output(dput(parsed)) }) test_that("Smith, John Paul and {MATLAB, Inc.}", { authors <- "Smith, John Paul and {MATLAB, Inc.}" parsed <- bibtex:::ArrangeAuthors(authors) expect_equal(length(unlist(parsed$given[1])), 2L) expect_snapshot_output(dput(parsed)) }) test_that("{de Gama}, Vasco", { authors <- "{de Gama}, Vasco" parsed <- bibtex:::ArrangeSingleAuthor(authors) expect_equal(length(parsed$family), 2L) expect_snapshot_output(dput(parsed)) }) test_that("Mark von Bommel", { authors <- "Mark von Bommel" parsed <- bibtex:::ArrangeSingleAuthor(authors) expect_equal(length(parsed$family), 2L) expect_snapshot_output(dput(parsed)) }) test_that("de la Soul, Posdnous", { authors <- "de la Soul, Posdnous" parsed <- bibtex:::ArrangeSingleAuthor(authors) expect_equal(length(parsed$family), 2L) expect_snapshot_output(dput(parsed)) }) test_that("des White, Jr., Walter", { authors <- "des White, Jr., Walter" parsed <- bibtex:::ArrangeSingleAuthor(authors) expect_equal(length(parsed$family), 3L) expect_snapshot_output(dput(parsed)) }) bibtex/tests/testthat.R0000644000176200001440000000007014313223106014644 0ustar liggesuserslibrary(testthat) library(bibtex) test_check("bibtex") bibtex/R/0000755000176200001440000000000014364425721011740 5ustar liggesusersbibtex/R/utils.R0000644000176200001440000002516314313223106013215 0ustar liggesusers# Helper functions for do_read_bib() #' Parse (at)string keys #' #' Returns a data.frame with all the string keys and their value to be used on #' the `bib` file. #' #' @param map_string data frame with at least one column. Used as index, the #' only condition is that it must have one row per string. #' #' @param stringlines A vector of characters with the same length that #' map_string (in terms of number of rows), containing the text of each #' string. #' #' @details #' Both inputs are generated on [do_read_bib()]. This function parses the #' (at) string sequentially, i.e. if the first string is used for concatenation #' in the second string it should work. #' #' #' @examples #' #' map_string <- data.frame( #' entry = c("@STRING", "@STRING", "@STRING") #' ) #' #' #' stringlines <- c( #' "@STRING{STOC-key = \"OX{\\singleletter{stoc}}\"}", #' "@STRING{ACM = \"The OX Association for Computing Machinery\"}", #' "@STRING{STOC = ACM # \" Symposium on the Theory of Computing\"}" #' ) #' #' #' parse_strings(map_string, stringlines) #' @noRd parse_strings <- function(map_string, stringlines) { # This needs to be done in a loop, since strings can depend also # on values of previous strings parsed_string <- NULL for (i in seq_along(stringlines)) { row <- map_string[i, ] singleline <- stringlines[i] map_braces <- check_balanced_braces(singleline, row$init) # Extract string between first and last brace first_bracket_position <- map_braces$pos[1] last_bracket_position <- min(map_braces[map_braces$cum_flag == 0, ]$pos) singleline <- trimws(substr( singleline, first_bracket_position, last_bracket_position )) # Remove also the braces singleline <- trimws(gsub("^\\{|\\}$", "", singleline)) # Split on name/value splitted <- unlist(strsplit(singleline, "=")) finalrow <- data.frame( name_string = trimws(splitted[1]), value = trimws(splitted[-1]) ) # As character to avoid compatibility issues with older R versions finalrow$name_string <- as.character(finalrow$name_string) finalrow$value <- as.character(finalrow$value) parsed_string <- rbind(parsed_string, finalrow) } # Need to replace and concat values on loop # Iterate over map_parsed and concat init <- parsed_string[1, ] # Trim leading and trailing commas init$value <- trimws(init$value, "both") init$value <- trimws(init$value, "both", whitespace = "\"") # If only one string return if (nrow(parsed_string) == 1) { return(init) } for (j in seq(2, nrow(parsed_string))) { # Search if need to replace and concat row <- parsed_string[j, ] value <- replace_string_and_concat( row$value, init$name_string, init$value ) row$value <- trimws(value, "both", "\"") init <- rbind(init, row) } return(init) } #' Parse a single entry #' #' #' Parses a character string to an R object, that would be used to create #' a [bibentry()] object on a later stage. #' #' @return A named character object with two attributes: entry with the #' BibTeX entry type and key with the assigned key on the file. #' #' @param init Number of line where the entry begins #' @param end Number of line where the entry ends #' @param lines The content of the .bib file to be parsed, `init` and `end` #' are used to select the corresponding lines #' @param map_string_end The output of [parse_strings()] or `NULL`. #' #' #' @examples #' #' lines <- readLines(system.file("bib", "utils.bib", package = "bibtex")) #' parse_single_entry( #' init = 2, #' end = 8, #' lines = lines, #' map_string_end = NULL #' ) #' @noRd parse_single_entry <- function(init, end, lines, map_string_end) { entry_lines <- lines[seq(init, end)] # Skipping empty lines entry_lines <- entry_lines[entry_lines != ""] # Guess lines outside of the entry guess_eoentry <- max(grep("\\}$", entry_lines)) entry_lines <- entry_lines[seq(1, guess_eoentry)] # Collapse to single line entry_collapsed <- paste0(entry_lines, collapse = "\n") # Check balanced braces map_braces <- check_balanced_braces(entry_collapsed, init) # Extract string from beginning to first balanced brace lastbrace <- min(map_braces[map_braces$cum_flag == 0, ]$pos) # This would remove the last brace, it is what we want cleaned_entry <- trimws(substr(entry_collapsed, 1, lastbrace - 1)) # Identify fields # Safest pattern I found: # ,singleword= # E.g: # ...}, author={...} # ...",\ntitle =" # etc. # As field entry could have -, _ or : need to replace when identifying the # fields. This improve the regex matching pattern cleaned_entry_sub <- gsub("(?<=[[:alnum:]])_|(?<=[[:alnum:]])-|(?<=[[:alnum:]]):", "x", cleaned_entry, perl = TRUE ) # Protect commas on brackets to avoid error on splitting protected <- gsub(",(?![^\\}]*(\\{|$))", "|", cleaned_entry_sub, perl = TRUE ) posfields <- unlist(gregexpr(",\\s*\\w+\\s*=", protected)) # Add init and last pos posfields <- sort(unique(c(1, posfields, nchar(cleaned_entry)))) formatted_bib <- lapply(seq_len(length(posfields) - 1), function(x) { str <- substr(cleaned_entry, posfields[x], posfields[x + 1]) # Cleanup leading and trailing comma and blanks str <- trimws(gsub("^,|,$", "", str)) }) formatted_bib <- unlist(formatted_bib) # Each field is now on a single line # # Extract type of entry and key # String to first comma entry_key <- formatted_bib[1] entry_key <- gsub("@", "", unlist(strsplit(entry_key, "\\{"))) entry_name <- trimws(entry_key[1]) key_name <- trimws(entry_key[2]) # Now treat fields fields <- formatted_bib[-1] treat_fields <- vapply(seq_along(fields), function(x) { string <- fields[x] equalsign <- grep("=", strsplit(string, "")[[1]]) field_name <- trimws(substr(string, 1, equalsign - 1)) field_value <- trimws(substr(string, equalsign + 1, nchar(string))) c(field_name, field_value) }, FUN.VALUE = character(2) ) field_names <- trimws(treat_fields[1, ]) field_value <- trimws(treat_fields[2, ]) # Try hard to replace with string values field_value <- lapply(field_value, replace_string_and_concat, string_names = map_string_end$name_string, string_values = map_string_end$value ) field_value <- unlist(field_value) # Lead/trailing curly braces ¿? field_value <- gsub("^\\{|\\}$", "", field_value) # Lead/trailing quotes field_value <- gsub("^\"|\"$", "", field_value) # Build final object attr(field_value, "entry") <- trimws(entry_name) names(field_value) <- trimws(field_names) attr(field_value, "key") <- key_name attr(field_value, "srcref") <- seq(init, end) return(field_value) } #' Replaces a word with a (at)string value and concatenate #' #' Helper function #' #' #' @noRd #' #' @param x values to evaluate #' @param string_names Names of the strings detected on the .bib file #' @param string_values Values of the string #' #' @return A string with the specified treatment #' #' @examples #' x <- "\"CIA means \" # CIA" #' string <- c("CIA", "FBI") #' value <- c("Central Intelligence Agency", "Federal Bureau of Investigation") #' #' # Replace and concat #' replace_string_and_concat(x, string, value) #' x_alt <- "CIA # \" can be abbreviated as CIA, and FBI stands for \" # FBI" #' #' replace_string_and_concat(x_alt, string, value) #' #' #' # Full replacement #' x2 <- "CIA" #' replace_string_and_concat(x2, string, value) #' #' # No replacement #' x3 <- "\"CIA\"" #' replace_string_and_concat(x3, string, value) #' #' # Protected #' x4 <- "{CIA}" #' replace_string_and_concat(x3, string, value) replace_string_and_concat <- function(x, string_names, string_values) { # As characters instead of factors string_names <- as.character(string_names) string_values <- as.character(string_values) # If has braces then return the same value if (grepl("\\{|\\}", x)) { return(x) } # If has a concat try to replace # Use lower for avoid caps mismatching if (tolower(x) %in% tolower(string_names)) { # Case of full replacement index <- match(tolower(x), tolower(string_names)) return(paste0("\"", string_values[index], "\"")) } else if (grepl(" # ", x)) { # Hardest case, replace and concat parts <- unlist(strsplit(x, " # ")) parts <- lapply(parts, function(y) { if (tolower(y) %in% tolower(string_names)) { index2 <- match(tolower(y), tolower(string_names)) string_values[index2] } else { y } }) # Flatten and clean newval <- paste(trimws(parts, "both", "\""), collapse = "") return(trimws(newval)) } else { return(x) } } #' Error catching #' #' Evaluates if braces \{ are balanced or not and returns an error instead. #' #' @param x The string or entry to be evaluated #' @param line The number of line of the string/entry evaluated. This is used #' for generating an informative error only. #' #' @examples #' if (FALSE) { #' # Dont run, throws an error #' error <- paste0( #' "@misc{murdoch:2010, author = {Duncan Murdoch}", #' "title = {I {am} unbalanced", #' "year = 2010", #' "url = {http://developer.r-project.org/parseRd.pdf}}" #' ) #' #' check_balanced_braces(error, 3) #' } #' #' #' ok <- paste0( #' "@misc{murdoch:2010, author = {Duncan Murdoch}", #' "title = {I {am} balanced}", #' "year = 2010", #' "url = {http://developer.r-project.org/parseRd.pdf}}" #' ) #' #' check_balanced_braces(ok, 3) #' @noRd check_balanced_braces <- function(x, line) { # Check if braces are balanced ---- # Split the line into chars, extract the position of # braces (left and right) and manipulate to_chars <- unlist(strsplit(x, "")) # Create table with brace map pos_leftbrace <- grep("\\{", to_chars) pos_rightbrace <- grep("\\}", to_chars) map_braces <- data.frame( brace = c( rep("{", length(pos_leftbrace)), rep("}", length(pos_rightbrace)) ), pos = c(pos_leftbrace, pos_rightbrace) ) map_braces <- map_braces[order(map_braces$pos), ] # Asign index to each brace: left = 1 and right = -1 # Then cumsum. This reveals the structure: e.g: # @aa{x, a=1, b={s{S}}, f="x{x}x"} # This is translated as # { { { } } { } } # 1 1 1 -1 -1 1 -1 -1 # 1 2 3 2 1 2 1 0 map_braces$flag <- ifelse(map_braces$brace == "{", 1, -1) map_braces$cum_flag <- cumsum(map_braces$flag) # If there is no 0 the braces are unbalanced: Throw an error if (!(0 %in% map_braces$cum_flag)) { message( "Error: Unbalanced braces on entry (line ", line, "). Invalid .bib file" ) # Trigger an error for tryCatch(es) stop() } return(map_braces) } bibtex/R/zzz.R0000644000176200001440000000013714313223106012704 0ustar liggesusers.onLoad <- function(libname, pkgname) { backports::import(pkgname, "trimws") invisible() } bibtex/R/bibtex-package.R0000644000176200001440000000031214313223106014710 0ustar liggesusers#' @keywords internal "_PACKAGE" # The following block is used by usethis to automatically manage # roxygen namespace tags. Modify with care! ## usethis namespace: start ## usethis namespace: end NULL bibtex/R/bibtex.R0000644000176200001440000003475514364425721013356 0ustar liggesusersUnlistSplitClean <- function(s) { unlist(strsplit(gsub("[{}]", "", trimws(s)), " ")) } #' @importFrom tools deparseLatex latexToUtf8 parseLatex cleanupLatex <- function(x) { if (!length(x)) { return(x) } if (any(grepl("mkbib", x))) { x <- gsub("mkbibquote", "dQuote", x) x <- gsub("mkbibemph", "emph", x) x <- gsub("mkbibbold", "bold", x) } x <- gsub("\\\\hyphen", "-", x) latex <- try(parseLatex(x), silent = TRUE) if (inherits(latex, "try-error")) { x } else { x <- deparseLatex(latexToUtf8(latex), dropBraces = TRUE) if (grepl("\\\\[[:punct:]]", x)) { x <- gsub("\\\\'I", "\u00cd", x) x <- gsub("\\\\'i", "\u00ed", x) x <- gsub('\\\\"I', "\u00cf", x) x <- gsub('\\\\"i', "\u00ef", x) x <- gsub("\\\\\\^I", "\u00ce", x) x <- gsub("\\\\\\^i", "\u00ee", x) x <- gsub("\\\\`I", "\u00cc", x) x <- gsub("\\\\`i", "\u00ec", x) Encoding(x) <- "UTF-8" } x } } ArrangeAuthors <- function(x) { rx <- "(?i)[[:space:]]+and[[:space:]]+" x <- gsub("[[:space:]]{2,}", " ", x, useBytes = TRUE) authors <- lapply(strsplit(x, rx, perl = TRUE)[[1]], ArrangeSingleAuthor) do.call("c", authors) } ArrangeSingleAuthor <- function(y) { if (grepl("[\\]", y)) { tmp <- try(parseLatex(y), TRUE) if (!inherits(tmp, "try-error")) { y <- deparseLatex(latexToUtf8(tmp)) } } parts <- unlist(strsplit(y, ", ?(?![^{}]*})", perl = TRUE)) len.parts <- length(parts) if (len.parts == 1L) { # parts <- "{Barnes} {and} {Noble,} {Inc.}" if (grepl("[^{][[:print:]][}]$", parts)) { s <- unlist(strsplit(parts, "")) i <- length(s) - 1L paren <- 1 while (paren > 0 && i > 0) { if (s[i] == "{") { paren <- paren - 1L } else if (s[i] == "}") { paren <- paren + 1L } i <- i - 1L } last <- paste0(s[(i + 2):(length(s) - 1)], collapse = "") first <- NULL if (i > 0) { first <- paste0(s[seq_len(i - 1)], collapse = "") } person(UnlistSplitClean(first), cleanupLatex(last)) # Mathew {McLean IX} } else { vonrx <- "(^|[[:space:]])([[:lower:]+[:space:]?]+)[[:space:]]" m <- regexec(vonrx, parts) von <- unlist(regmatches(parts, m))[3L] if (!is.na(von)) { name <- unlist(strsplit(parts, vonrx)) if (length(name) == 1L) { # von Bommel person(family = c(cleanupLatex(von), cleanupLatex(name))) } else { # Mark von Bommel person(given = UnlistSplitClean(name[1L]), family = c(cleanupLatex(von), cleanupLatex(name[2L]))) } } else { # George Bernard Shaw name <- UnlistSplitClean(parts) len.name <- length(name) if (len.name <= 1L) { person(family = name) } else { person(given = name[seq_len(len.name - 1L)], family = name[len.name]) } } } } else if (len.parts == 2L) { if (grepl("^[{]", parts[1L])) { # e.g. {de Gama}, Vasco person(UnlistSplitClean(parts[2L]), UnlistSplitClean(parts[1L])) } else { vonrx <- "^([[:lower:]+[:space:]?]+)[[:space:]]" m <- regexec(vonrx, parts[1L]) von <- unlist(regmatches(parts[1L], m))[2] if (is.na(von)) { # e.g. Smith, John Paul person(UnlistSplitClean(parts[2L]), cleanupLatex(parts[1L])) } else { # e.g. de la Soul, John person(UnlistSplitClean(parts[2L]), c(cleanupLatex(von), cleanupLatex(sub(vonrx, "", parts[1L])))) } } } else if (len.parts == 3L) { vonrx <- "^([[:lower:]+[:space:]?]+)[[:space:]]" m <- regexec(vonrx, parts[1L]) von <- unlist(regmatches(parts[1L], m))[2] if (is.na(von)) { # e.g. White, Jr., Walter person(UnlistSplitClean(parts[3L]), c(cleanupLatex(parts[1L]), cleanupLatex(parts[2L]))) } else { # e.g. des White, Jr., Walter person( UnlistSplitClean(parts[3L]), c(cleanupLatex(von), cleanupLatex(sub(vonrx, "", parts[1L])), cleanupLatex(parts[2L])) ) } } else { stop("Invalid author/editor format.") } } #' @importFrom utils bibentry person citation installed.packages toBibtex make.bib.entry <- function(x) { type <- attr(x, "entry") key <- attr(x, "key") y <- as.list(x) names(y) <- tolower(names(y)) err.fun <- function(e) { message(sprintf( "ignoring entry '%s' (line %d) because :\n\t%s\n", key, attr(x, "srcref")[1], conditionMessage(e) )) NULL } if ("author" %in% names(y)) { y[["author"]] <- tryCatch(ArrangeAuthors(y[["author"]]), error = err.fun) if (is.null(y[["author"]])) { return() } } if ("editor" %in% names(y)) { y[["editor"]] <- tryCatch(ArrangeAuthors(y[["editor"]]), error = err.fun) if (is.null(y[["editor"]])) { return() } } # if there is a date entryn try to extract the year (#15) fields <- names(y) if ("date" %in% fields && !"year" %in% fields) { y$year <- format(as.Date(y$date), "%Y") } tryCatch(bibentry(bibtype = type, key = key, other = y), error = err.fun) } make.citation.list <- function(x) { rval <- list() for (i in seq_along(x)) { if (!is.null(x[[i]])) { rval <- c(rval, x[[i]]) } } class(rval) <- c("bibentry") rval } findBibFile <- function(package) { if (package %in% c( "base", "datasets", "graphics", "grDevices", "methods", "stats", "stats4", "tools", "utils" ) ) { system.file("bib", sprintf("%s.bib", package), package = "bibtex") } else { reference_locations <- c("REFERENCES.bib", "inst/REFERENCES.bib") for (file_path in reference_locations) { attempt <- system.file(file_path, package = package) if (nzchar(attempt)) { return(attempt) } } stop(sprintf("no bibtex database for package '%s'", package)) } } #' convenience wrapper around .External call #' #' This is a convenience function for packages that do need to call the internal #' functionality of \code{\link{read.bib}} but does different processing. This is #' a simple wrapper around the \code{.External} code used by \code{\link{read.bib}} #' #' The parser is greatly inspired from the \samp{bibparse} library. #' #' @seealso \code{\link[utils]{bibentry}} #' #' @param file file name #' @param encoding encoding #' @param srcfile Deprecated #' @export do_read_bib <- function(file, encoding = "unknown", srcfile) { if (!missing("srcfile")) { message("'srcfile' argument is deprecated.") } # Assess the extension of the file if (!file.exists(file)) stop("Error: unable to open file to read") # Read all as UTF-8 lines <- readLines(file, encoding = encoding, warn = FALSE) # Aux trimlines <- trimws(lines) # Map bib file # Init and end of citation init <- grep("^@", trimlines) # Identify type of entry entry <- unlist(lapply(trimlines[init], function(x) { unlist(strsplit(x, "\\{"))[1] })) # Map fo document map_bib <- data.frame( entry = trimws(entry), entry_lower = trimws(tolower(entry)), init = init, # The end of each entry is at most the # previous line of the next entry end = c(init[-1] - 1, length(lines)) ) # Extract map string map_string <- map_bib[map_bib$entry_lower == "@string", ] if (nrow(map_string) > 0) { # This is needed for multiline strings stringlines <- lapply(seq_len(nrow(map_string)), function(x) { init <- map_string$init[x] end <- map_string$end[x] string_line <- lines[seq(init, end)] # Guess lines outside of the entry guess_eostring <- max(grep("\\}$", string_line)) string_line <- string_line[seq(1, guess_eostring)] # Collapse to single line string_line <- paste0(string_line, collapse = "\n") string_line }) stringlines <- unlist(stringlines) map_string_end <- tryCatch(parse_strings(map_string, stringlines), warning = function(e) { NULL }, error = function(e) { stop("Error when parsing strings of ", file, call. = FALSE ) } ) } else { map_string_end <- NULL } # Select entries only, i.e. exclude preamble, comment and string map_entries <- map_bib[!map_bib$entry_lower %in% c( "@preamble", "@string", "@comment" ), ] # Parse single entry end <- lapply(seq_len(nrow(map_entries)), function(x) { parse_single_entry( map_entries$init[x], map_entries$end[x], lines, map_string_end ) }) return(end) } #' bibtex parser #' #' Parser for bibliography databases written in the bib format. #' #' @param file bib file to parse. By default, the file #' \file{REFERENCES.bib} in the root directory of the package given by #' the \code{package} argument is used. #' @param package package from which we want to read the bibliography. #' Only used if \code{file} is unspecified. #' Core R packages (base, datasets, graphics, grDevices, methods, #' stats, stats4, tools and utils) are treated specially: this package #' contains bibtex entries for these packages. #' @param encoding encoding #' @param header DEPRECATED. #' @param footer DEPRECATED #' #' @return An object of class \code{"bibentry"}, similar to those obtained by the #' \code{\link[utils]{bibentry}} function. #' #' @references Nelson H. F. Beebe. bibparse 1.04. 1999. \url{http://www.math.utah.edu/~beebe/} #' #' @examples #' ## this package has a REFERENCES.bib file #' bib <- read.bib(package = "bibtex") #' #' ## bibtex collects bibtex entries for R base packages #' base.bib <- read.bib(package = "base") #' #' \dontshow{ #' bib <- read.bib(package = "base") #' bib <- read.bib(package = "datasets") #' bib <- read.bib(package = "graphics") #' bib <- read.bib(package = "grDevices") #' bib <- read.bib(package = "methods") #' bib <- read.bib(package = "stats") #' bib <- read.bib(package = "stats4") #' bib <- read.bib(package = "tools") #' bib <- read.bib(package = "utils") #' } #' @export read.bib <- function(file = findBibFile(package), package = "bibtex", encoding = "unknown", header, footer) { if (!missing("header")) { message("'header' argument is deprecated.") } if (!missing("footer")) { message("'footer' argument is deprecated.") } if (!is.character(file)) { stop("'read.bib' only supports reading from files, 'file' should be a character vector of length one") } out <- tryCatch(do_read_bib( file = file, encoding = encoding ), error = function(e) { stop("Invalid bib file", call. = FALSE) }, warning = function(w) { if (any(grepl("syntax error, unexpected [$]end", w))) { NULL } } ) # keys <- lapply(out, function(x) attr(x, 'key')) at <- attributes(out) if ((typeof(out) != "integer") || (getRversion() < "3.0.0")) { out <- lapply(out, make.bib.entry) } else { out <- list() } preamble <- at[["preamble"]] out <- make.citation.list(out) attr(out, "strings") <- at[["strings"]] names(out) <- unlist(out$key) out } #' Generate a Bibtex File from Package Citations #' #' Generates a Bibtex file from a list of packages or all the installed packages. #' It is useful for adding relevant citations in Sweave documents. #' #' @param entry a \code{\link{bibentry}} object or a character vector of package #' names. If \code{NULL}, then the list of all installed packages is used. #' @param file output Bibtex file. #' @param verbose a logical to toggle verbosity. #' @param append logical. If \code{TRUE} content is appended to the file. #' #' @return the list of Bibtex objects -- invisibly. #' @author #' Renaud Gaujoux, based on the function \code{Rpackages.bib} #' from Achim Zeileis (see \emph{References}). #' #' @references #' \emph{[R] Creating bibtex file of all installed packages?} #' Achim Zeileis. R-help mailing list. #' #' @export #' @examples #' #' write.bib(c("bibtex", "utils", "tools"), file = "references") #' bibs <- read.bib("references.bib") #' write.bib(bibs, "references2.bib") #' md5 <- tools::md5sum(c("references.bib", "references2.bib")) #' md5[1] == md5[2] #' #' \dontshow{ #' unlink(c("references.bib", "references2.bib")) #' } write.bib <- function(entry, file = "Rpackages.bib", append = FALSE, verbose = TRUE) { bibs <- if (inherits(entry, "bibentry")) { entry } else if (is.character(entry)) { if (length(entry) == 0) { if (verbose) message("Empty package list: nothing to be done.") return(invisible()) } pkgs <- entry if (is.null(pkgs)) { ## use all installed packages pkgs <- unique(installed.packages()[, 1]) } bibs <- sapply(pkgs, function(x) try(citation(x)), simplify = FALSE) # bibs <- lapply(pkgs, function(x) try(toBibtex(citation(x)))) n.installed <- length(bibs) ## omit failed citation calls ok <- sapply(bibs, inherits, "bibentry") pkgs <- pkgs[ok] bibs <- bibs[ok] n.converted <- sum(ok) ## add bibtex keys to each entry pkgs <- lapply(seq_along(pkgs), function(i) { if (length(bibs[[i]]) > 1) { paste(pkgs[i], 1:length(bibs[[i]]), sep = "") } else { pkgs[i] } }) pkgs <- do.call("c", pkgs) bibs <- do.call("c", bibs) # formatting function for bibtex keys: # names with special characters must be enclosed in {}, others not. as.bibkey <- function(x) { i <- grep("[.]", x) if (length(i) > 0) { x[i] <- paste("{", x[i], "}", sep = "") } x } bibs <- mapply(function(b, k) { b$key <- k b }, bibs, pkgs, SIMPLIFY = FALSE) bibs <- do.call("c", bibs) if (verbose) message("Converted ", n.converted, " of ", n.installed, " package citations to BibTeX") bibs } else { stop("Invalid argument 'entry': expected a bibentry object or a character vector of package names.") } if (length(bibs) == 0) { if (verbose) message("Empty bibentry list: nothing to be done.") return(invisible()) } ## write everything to a single .bib file if (is.null(file)) { file <- stdout() } else if (is.character(file)) { if (!grepl("\\.bib$", file)) { # add .bib extension if necessary file <- paste(file, ".bib", sep = "") } } fh <- file(file, open = if (append) "a+" else "w+") on.exit(if (isOpen(fh)) close(fh)) if (verbose) message("Writing ", length(bibs), " Bibtex entries ... ", appendLF = FALSE) writeLines(toBibtex(bibs), fh) # writeLines(do.call("c", lapply(bibs, as.character)), fh) if (verbose) message("OK\nResults written to file '", file, "'") ## return Bibtex items invisibly invisible(bibs) } bibtex/NEWS.md0000644000176200001440000000322214364425721012634 0ustar liggesusers# bibtex 0.5.1 ## Bug fix - Replaced `as.personList(authors)` with `do.call(c, authors)` as requested by CRAN ([PR #52](https://github.com/ropensci/bibtex/pull/52)). # bibtex 0.5.0 ## New Features - The underlying parsing logic of bibtex files has been completely rewritten (huge thank you to [Diego Hernangómez (@dieghernan)](https://github.com/dieghernan), [PR #47](https://github.com/ropensci/bibtex/pull/47)) ## Unit Tests - Unit tests are now using testthat version 3 ([Diego Hernangómez (@dieghernan)](https://github.com/dieghernan), [PR #46](https://github.com/ropensci/bibtex/pull/46)). # bibtex 0.4.3 ## Bug fixes - Applied CRAN stabilization patches. ([#31](https://github.com/ropensci/bibtex/pull/31), thanks Prof. Brian Ripley!) - Removed dependency on `stringr`. ([#25](https://github.com/ropensci/bibtex/pull/25), thanks [@mllg](https://github.com/mllg)) - `ArrangeAuthors()` is now case insensitive when searching for and in an AND-joined list. ([#22](https://github.com/ropensci/bibtex/pull/22), thanks [@katrinleinweber](https://github.com/katrinleinweber)) - `findBibFile()` now looks at `inst/REFERENCES.bib` in addition to `REFERENCES.bib`. ([#19](https://github.com/ropensci/bibtex/pull/19), thanks [@ms609](https://github.com/ms609)) ## Documentation - Refreshed README content. ([#29](https://github.com/ropensci/bibtex/pull/29)). - Updated Package Maintainer and contributors. ([#30](https://github.com/ropensci/bibtex/pull/30)) ## Deployment - Switched CI from TravisCI to GitHub Actions. ([#29](https://github.com/ropensci/bibtex/pull/29)) - Added a `pkgdown` site for the package. ([#29](https://github.com/ropensci/bibtex/pull/29)) bibtex/MD50000644000176200001440000000750514364431402012047 0ustar liggesusers14c351c2d691b63a3dc2f3ef6cbf3d3d *DESCRIPTION f3c0d5cbbbdb112fbff27be23c986ca5 *NAMESPACE b0f7fa84554f65859ce678e74dec883a *NEWS.md e0ef681901465d24f47f9139cb2c086a *R/bibtex-package.R 66c7c16c9fa51716c2c842b96d12bc38 *R/bibtex.R eb20cdf65f02f0e9d08b2fcca7bcffbe *R/utils.R c99d74c687b5659314cf3e92682873ed *R/zzz.R aa04100a827441e8fa690d2e440d6b75 *README.md 7b54654c42cc549f21f78c9d795b67f8 *inst/NEWS.Rd 8bcba1916c0c788f5572368d076ecb31 *inst/REFERENCES.bib 328b89785aa42b2f1ba6bae713b6bd88 *inst/bib/badFormat.bib 417941fa83a4ee9cad2e452f3ba86cb7 *inst/bib/base.bib d4b57184262492f10a216a71e660677f *inst/bib/datasets.bib 9c4262a1ee733dfd8d534a344c8002a7 *inst/bib/grDevices.bib 838fb244de8d6987d9bc9f2f2888a2be *inst/bib/graphics.bib 5c5ec016b908e2790ca318275440c4ef *inst/bib/issue15.bib 8d49131f7ff9d3e1147fd6c03ba500a1 *inst/bib/issue17.bib 8c601c229168d11a1f056fa4a92fd89c *inst/bib/issue18.bib 4188de63bde34a2c6ad8ab7799806f64 *inst/bib/issue23.bib 1963067533d6d6393844127b1cf2de52 *inst/bib/issue6.bib 6d909f5a80402723f8262cca438b4e11 *inst/bib/issue7.bib 8a7583d10eaf406a5278bc1ea669f911 *inst/bib/issue9.bib c5a048b261add22e9c8432ffa846f9d4 *inst/bib/methods.bib 8f93c0d04ed39e60ab92e7afce4b9428 *inst/bib/multiline_string.bib 8b28eb6dcd7a7bb9b15e1efdd8420f76 *inst/bib/stats.bib f8f68566461d5c0c0b3d78be4fc2a380 *inst/bib/stats4.bib 69499be43c7085715449ffd5f29e5434 *inst/bib/tools.bib a555a911d9ecd4f0e32a26ab2737c449 *inst/bib/unable_recover_42.bib fb074753bb0f0698634ff6f83de003c0 *inst/bib/unbalanced_braces.bib 7d79aef1c884aabd303c89df2671c017 *inst/bib/utils.bib c59b14d524310765a97261056f2928c9 *inst/bib/xampl_message.bib 318906ff3bffab52f1f404ec2c090ba1 *inst/bib/xampl_mod.bib c6d7be56c65e8a2f1e6744e3cdae3ebc *inst/bib/xampl_multiline.bib b9e6b3f5eb9cdb79b821d1d0259c455f *inst/bib/xampl_preamble.bib 2f5b841952861ce865f65f4373c2bf90 *inst/bib/xampl_single.bib e5b3d7a46eb614a664802749da36d32e *inst/bib/xampl_standard.bib 3a250fb93084c9dd945f047f2e71e881 *man/bibtex-package.Rd dcce7b1bac8cff8a1f417dc71998853f *man/do_read_bib.Rd 54eb2fb4534746ec375b6bb379a13999 *man/read.bib.Rd 74252134e06cc747b89e9e7eb72dd721 *man/write.bib.Rd 97db9ba93237f409bcbb2a17c79d86ba *tests/testthat.R 8271c27e7e09ce595ce76433ae4167db *tests/testthat/_snaps/authors.md 3915d4269c935280cddacfc7f3dbca0f *tests/testthat/_snaps/do_read_bib.md dd24adf7c80cf8cb77890bf11179688d *tests/testthat/_snaps/examples.md 7a44e7d14d3cec148880bc111af17c50 *tests/testthat/_snaps/full_xampl.md 9549ec7d56dbf66fe94bdfcb19be5333 *tests/testthat/_snaps/multiline.md a49294441373a1b765ee4a569fb2a0b6 *tests/testthat/_snaps/preamble.md d078c6877d734fd8c7090025f59cccdc *tests/testthat/_snaps/previous-issues.md 9711c12d4f76a13f54ccbfcddffad980 *tests/testthat/_snaps/previous-issues/issue9.bib 041839d45ab4139c1d59614b4da40208 *tests/testthat/_snaps/read.md dddbe11d203cb6b1bf1b20e821d34b0e *tests/testthat/_snaps/standard-entries.md 53f790020293b5a2a7493524fa1597b1 *tests/testthat/_snaps/utils.md 097b73c48f0b817a64b90c0e8ccd8f2d *tests/testthat/test-authors.R d1006c729e77a86fbcb16b8b633b6eb7 *tests/testthat/test-bibtex.R f8e22d4fd4fd3020c7e0462a898df516 *tests/testthat/test-deprecated.R 499ba91a2f361ed0e3c03f745074767f *tests/testthat/test-do_read_bib.R b605beb750ebb2125dd419bff99a23fc *tests/testthat/test-examples.R 5b53bc1ba96776fdd44c3a5762464d0e *tests/testthat/test-fatal-errors.R 2ecfaab3186c18b1c1d134d2f3efec10 *tests/testthat/test-full_xampl.R d7e0e6cf847ef0aa03fbcb14ac2b60f5 *tests/testthat/test-multiline.R bbf388eea3da6db43cccedcfccb72972 *tests/testthat/test-preamble.R e889ee2a4282a5efb2d31805527bfa26 *tests/testthat/test-previous-issues.R ffb9907814cee0093543e6d93eaf1545 *tests/testthat/test-read.R 554c27d52378b6e0ddb3a34c1eae5b55 *tests/testthat/test-standard-entries.R 286aa32c51d8e623ec8437ffcb345ccf *tests/testthat/test-utils.R dc744016a4312042109a0c2780a56756 *tests/testthat/test-write.R bibtex/inst/0000755000176200001440000000000014313223106012477 5ustar liggesusersbibtex/inst/REFERENCES.bib0000644000176200001440000000046214313223106014600 0ustar liggesusers@Manual{R, title = {R: A Language and Environment for Statistical Computing}, author = {{R Development Core Team}}, organization = {R Foundation for Statistical Computing}, address = {Vienna, Austria}, year = {2009}, note = {{ISBN} 3-900051-07-0}, url = {http://www.R-project.org}, } bibtex/inst/NEWS.Rd0000644000176200001440000000171714313223106013550 0ustar liggesusers\name{NEWS} \title{News for Package \pkg{bibtex}} \newcommand{\cpkg}{\href{http://CRAN.R-project.org/package=#1}{\pkg{#1}}} \section{Changes in version 0.4.0 (2014-12-31)}{ \itemize{ \item Removed the function \code{yy_fatal_error} which even though it was never actually called, triggered some R CMD check nuisance \item Removed useless dependency on Rcpp which bibtex no longer uses \item Added cite by key functionality to \code{read.bib}, pull request by Michael Koohafkan } } \section{Changes in version 0.3-5 (2013-02-04)}{ \itemize{ \item Fix for bib files with no content. } } \section{Changes in version 0.3-1 (2011-12-11)}{ \itemize{ \item New function \code{write.bib} contributed by Renaud Gaujoux. \item Missing \code{\%} in error reporting in read.bib. Fix provided by Renaud Gaujoux. } } \section{Changes in version 0.3-0 (2011-11-17)}{ \itemize{ \item Fixed long standing bug re backslahes. } } bibtex/inst/bib/0000755000176200001440000000000014313223106013233 5ustar liggesusersbibtex/inst/bib/base.bib0000644000176200001440000002727314313223106014636 0ustar liggesusers@String{Rnews = "http://CRAN.R-project.org/doc/Rnews/" } @String{Rnews2001-1 = rnews # "Rnews_2001-1.pdf"} @String{Rnews2001-2 = rnews # "Rnews_2001-2.pdf"} @String{Rnews2001-3 = rnews # "Rnews_2001-3.pdf"} @String{Rnews2002-1 = rnews # "Rnews_2002-1.pdf"} @String{Rnews2002-2 = rnews # "Rnews_2002-2.pdf"} @String{Rnews2002-3 = rnews # "Rnews_2002-3.pdf"} @String{Rnews2003-1 = rnews # "Rnews_2003-1.pdf"} @String{Rnews2003-2 = rnews # "Rnews_2003-2.pdf"} @String{Rnews2003-3 = rnews # "Rnews_2003-3.pdf"} @String{Rnews2004-1 = rnews # "Rnews_2004-1.pdf"} @String{Rnews2004-2 = rnews # "Rnews_2004-2.pdf"} @String{Rnews2005-1 = rnews # "Rnews_2005-1.pdf"} @String{Rnews2005-2 = rnews # "Rnews_2005-2.pdf"} @String{Rnews2006-1 = rnews # "Rnews_2006-1.pdf"} @String{Rnews2006-2 = rnews # "Rnews_2006-2.pdf"} @String{Rnews2006-3 = rnews # "Rnews_2006-3.pdf"} @String{Rnews2006-4 = rnews # "Rnews_2006-4.pdf"} @String{Rnews2006-5 = rnews # "Rnews_2006-5.pdf"} @String{Rnews2007-1 = rnews # "Rnews_2007-1.pdf"} @String{Rnews2007-2 = rnews # "Rnews_2007-2.pdf"} @String{Rnews2007-3 = rnews # "Rnews_2007-3.pdf"} @String{Rnews2008-1 = rnews # "Rnews_2008-1.pdf"} @String{Rnews2008-2 = rnews # "Rnews_2008-2.pdf"} @String{CRAN = "http://cran.r-project.org/" } @String{manuals = CRAN # "doc/manuals/" } @String{RCoreTeam = "{R Development Core Team}" } @String{RFoundation = "R Foundation for Statistical Computing" } @book{R:Chambers:1998, author = {John M. Chambers}, title = {Programming with Data}, publisher = {Springer}, year = 1998, address = {New York}, note = {ISBN 0-387-98503-4}, url = {http://cm.bell-labs.com/cm/ms/departments/sia/Sbook/}, publisherurl = {http://www.springeronline.com/sgw/cda/frontpage/0,11855,4-40109-22-2008951-0,00.html}, abstract = {This Green Book describes version 4 of S, a major revision of S designed by John Chambers to improve its usefulness at every stage of the programming process.}, } @book{R:Becker+Chambers+Wilks:1988, author = {Richard A. Becker and John M. Chambers and Allan R. Wilks}, title = {The New {S} Language}, publisher = {Chapman \& Hall}, year = 1988, address = {London}, abstract = {This book is often called the {Blue Book}, and introduced what is now known as S version 3, or S3.} } @book{R:Chambers+Hastie:1992, author = {John M. Chambers and Trevor J. Hastie}, title = {Statistical Models in {S}}, publisher = {Chapman \& Hall}, year = 1992, address = {London}, note = {ISBN 9780412830402}, publisherurl = {http://www.crcpress.com/shopping_cart/products/product_detail.asp?sku=C3040&parent_id=&pc=}, abstract = {This is also called the {White Book}. It described software for statistical modeling in S and introduced the S3 version of classes and methods.}, } @book{linpack, author = "J. J. Dongarra and J. R. Bunch and C. B. Moder and G. W. Stewart", title = "LINPACK users guide", publisher = "SIAM", address = "Philadelphia", year = 1978 } @book{handbook+math+functions, author = "Abramowitz, M. and Stegun, I. A", year = 1972, title = "Handbook of Mathematical Functions", address = "New York", publisher = "Dover Publications" } @manual{lapack, author = "Anderson. E. and ten others", year = 1999, title = {{LAPACK} Users Guide}, url = "http://www.netlib.org/lapack/lug/lapack_lug.html", publisher = "SIAM", edition = "Third" } @book{eigen, author = "Smith, B. T and Boyle, J. M. and Dongarra, J. J. and Garbow, B. S. and Ikebe, Y. and Klema, V., and Moler, C. B.", year = 1976, publisher = "Springer-Verlag", title = "Matrix Eigensystems Routines -- {EISPACK} Guide" } @manual{cobjectconversion, author = "Duncan Temple Lang", year = 2001, url = "http://developer.R-project.org/CObjectConversion.pdf", title= "An Extensible Conversion Mechanism for {.C()} calls" } @book{algebraicEigen, author = "Wilkinson, J. H.", year = 1965, publisher = "Clarendon Press", address = "Oxford", title = "The Algebraic Eigenvalue Problem" } @book{C, author = "Kernighan, B. W. and Ritchie, D. M.", year = 1988, title = "The C Programming Language", edition = "Second Edition", publisher = "Prentice Hall" } @manual{dateformats, author = "International Organization for Standardization", title = "ISO 8601. Data elements and interchange formats -- Information interchange -- Representation of dates and times", year = "2004, 1988, 1997, ...", url = "http://www.qsl.net/g1smd/isopdf.htm" } @manual{R:writingRExtensions, author = RCoreTeam, organization = RFoundation, address = {Vienna, Austria}, year = {2009}, title = "Writing R extensions", url = manuals # "R-exts.html" } @manual{R:installadmin, author = RCoreTeam, organization = RFoundation, address = {Vienna, Austria}, year = {2009}, title = "R installation and Administration", url = manuals # "R-admin.html" } @Article{Rnews:Lang:2001a, author = {Duncan Temple Lang}, title = {In Search of {C/C++} \& {FORTRAN} Routines}, journal = {R News}, year = 2001, volume = 1, number = 3, pages = {20--23}, month = {September}, url = Rnews, pdf = Rnews2001-3 } @Article{floatingpoint, author = "D. Goldberg", year = 1991, title = "What Every Computer Scientist Should Know about Floating-Point Arithmetic", journal = "ACM Computing Surveys", volume = 23, number = 1, url = "http://www.validlab.com/goldberg/", pdf = "http://www.validlab.com/goldberg/paper.pdf" } @book{graphicalmethods, author = "Chambers, J. M. and Cleveland, W. S. and Kleiner, B. and Tukey, P.A.", title = "Graphical Methods for Data Analysis", publisher = "Wadsworth", year = 1983 } @book{matrixAlgebra, author = "Shayle R. Searle", title = "Matrix Algebra Useful for Statistics", publisher = "John Wiley and Sons", year = 1982 } @book{MASS, author = {William N. Venables and Brian D. Ripley}, title = {Modern Applied Statistics with {S}. Fourth Edition}, publisher = {Springer}, year = 2002, address = {New York}, note = {ISBN 0-387-95457-0}, url = {http://www.stats.ox.ac.uk/pub/MASS4/}, publisherurl = {http://www.springeronline.com/sgw/cda/frontpage/0,11855,4-40109-22-1542120-0,00.html}, abstract = {A highly recommended book on how to do statistical data analysis using R or S-Plus. In the first chapters it gives an introduction to the S language. Then it covers a wide range of statistical methodology, including linear and generalized linear models, non-linear and smooth regression, tree-based methods, random and mixed effects, exploratory multivariate analysis, classification, survival analysis, time series analysis, spatial statistics, and optimization. The on-line complements available at the books homepage provide updates of the book, as well as further details of technical material. }, orderinfo = {http://www.r-project.org/doc/bib/springer.txt} } @article{toms+algorithm, author = "Jenkins and Traub", year = 1972, title = "{TOMS} Algorithm 419", journal = "Comm. ACM", edition = 15, pages = "97--99" } @book{StockasticSimulation, author = "Ripley, B. D.", title = "Stochastic Simulation", publisher = "Wiley", year = 1987 } @book{unixpower, author = "Loukides, M. et al", year = 2002, title = "Unix Power Tools", publisher = "O Reilly" } @article{shellsort, author = "Sedgewick, R.", title = "A new upper bound for Shell sort", journal = "J. Algorithms", edition = 7, pages = "159--173", year = 1986 } @article{sort+minimal+storage, author = "Singleton, R. C.", title = "An efficient algorithm for sorting with minimal storage: Algorithm 347", journal = "Communications of the ACM", edition = 12, pages = "185--187", year = 1969 } @article{machar, author = "Cody, W. J.", title = "{MACHAR}: A subroutine to dynamically determine machine parameters", edition = 14, number = 4, pages = "303--311", year = "1988", journal = "Transactions on Mathematical Software" } @misc{ascii+unicode, author = "Markus Kuhn", title = "ASCII and Unicode quotation marks", url = "http://www.cl.cam.ac.uk/~mgk25/ucs/quotes.html" } @misc{bash+cmd, author = "Mike Huffman", title = "Operating Systems, Unix Shell (bash) / Windows Console (CMD.EXE)", url = "http://www.mhuffman.com/notes/dos/bash_cmd.htm", year = 2003 } @misc{wikipedia:collating+sequence, title = "Collating Sequence", year = 2009, url = "http://en.wikipedia.org/wiki/Collating_sequence" } @misc{unicode+collation+algorithm, title = "Unicode Collation Algorithm", url = "http://unicode.org/reports/tr10/", author = "Mark Davis and Ken Whistler", year = 2008 } @article{random:ahrens+dieter, title = "Extensions of Forsythes method for random sampling from the normal distribution", author = "Ahrens, J. H. and Dieter, U.", year = "1973", journal = "Mathematics of Computation", edition = "27", pages = "927--937" } @article{random:box+muller, title = "A note on the generation of normal random deviates", author = "Box, G. E. P. and Muller, M. E.", year = "1958", journal = "Annals of Mathematical Statistics", edition = "29", pages = "610--611" } @article{random:matteis+pagnutti, title = "Long-range Correlation Analysis of the Wichmann-Hill Random Number Generator", year = 1993, author = "De Matteis, A. and Pagnutti, S.", journal = "Statist. Comput.", edition = 3, pages = "67--70" } @article{random:kinderman+ramage, title = "Computer generation of normal random variables", author = "Kinderman, A. J. and Ramage, J. G.", year = 1976, journal = "Journal of the American Statistical Association", edition = 71, pages = "893--896" } @book{knuth:1997, title = "The Art of Computer Programming", author = "Knuth, D. E.", year = 1997, volume = 2, edition = "Third edition", url = "http://www-cs-faculty.stanford.edu/~knuth/taocp.html", publisher = "Addison-Wesley Professional" } @book{knuth:2002, title = "The Art of Computer Programming", author = "Knuth, D. E.", year = 1997, volume = 2, edition = "Third edition, ninth printing", url = "http://Sunburn.Stanford.EDU/~knuth/news02.html", publisher = "Addison-Wesley Professional" } @misc{random:marsaglia:1997, title = "A random number generator for C", author = "Marsaglia, G", year = "1997", note = "Discussion paper, posting on {sci.stat.math} usenet group" } @article{random:marsaglia+zaman:1998, title = "Some portable very-long-period random number generators", author = "Marsaglia, G. and Zaman, A.", year = 1994, journal = "Computers in Physics", edition = 8, pages = "117--121" } @article{random:matsumoto+nishimura:1998, author = "Matsumoto, M. and Nishimura, T.", title = "Mersenne Twister: A 623-dimensionally equidistributed uniform pseudo-random number generator", journal = "ACM Transactions on Modeling and Computer Simulation", edition = 8, pages = "3--30", url = "http://www.math.keio.ac.jp/~matumoto/emt.html", year = 1998 } @misc{random:superduper, author = "Reeds, J. and Hubert, S. and Abrahams, M.", title = "C implementation of SuperDuper, University of California at Berkeley", year = "1982--4", note = "Personal communication from Jim Reeds to Ross Ihaka", institution = "University of California at Berkeley" } @article{random:whichmann+hill:1982, title = "Algorithm {AS} 183: An Efficient and Portable Pseudo-random Number Generator", journal = "Applied Statistics", author = "Wichmann, B. A. and Hill, I. D.", edition = 31, pages = "188--190", note = "Remarks: 34, 198 and 35, 89", year = 1982 } @misc{ansi754, title = "{ANSI/IEEE} 754 Floating-Point Standard", url = "http://grouper.ieee.org/groups/754/" } bibtex/inst/bib/unbalanced_braces.bib0000644000176200001440000000047314313223106017330 0ustar liggesusers@misc{murdoch:2009, author = "Duncan Murdoch", title = "Parsing Rd files", year = 2009, url = "http://developer.r-project.org/parseRd.pdf" } @misc{murdoch:2010, author = "Duncan Murdoch", title = {"Parsing {Rd} files unbalanced", year = 2010, url = "http://developer.r-project.org/parseRd.pdf" } bibtex/inst/bib/xampl_message.bib0000644000176200001440000000321714313223106016541 0ustar liggesusers% Copyright (C) 1988, 2010 Oren Patashnik. % Unlimited copying and redistribution of this file are permitted if it % is unmodified. Modifications (and their redistribution) are also % permitted, as long as the resulting file is renamed. % Source: https://tug.org/texmf-docs/bibtex/xampl.bib @ARTICLE{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = 1986, volume = 41, number = 7, pages = "73+", month = jul, note = "This is a full ARTICLE entry", } @BOOK{book-full, author = "Donald E. Knuth", title = "Seminumerical Algorithms", volume = 2, series = "The Art of Computer Programming", publisher = "Addison-Wesley", address = "Reading, Massachusetts", edition = "Second", month = "10~" # jan, year = "{\noopsort{1973c}}1981", note = "This is a full BOOK entry", } @BOOKLET{booklet-full, author = "Jill C. Knvth", title = "The Programming of Computer Art", howpublished = "Vernier Art Center", address = "Stanford, California", month = feb, year = 1988, note = "This is a full BOOKLET entry", } @CONFERENCE{conference-full, author = "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis", title = "On Notions of Information Transfer in {VLSI} Circuits", editor = "Wizard V. Oz and Mihalis Yannakakis", booktitle = "Proc. Fifteenth Annual ACM", number = 17, series = "All ACM Conferences", pages = "133--139", month = mar, year = 1983, address = "Boston", organization = ACM, publisher = "Academic Press", note = "This is a full CONFERENCE entry", } bibtex/inst/bib/tools.bib0000644000176200001440000000022714313223106015052 0ustar liggesusers @misc{murdoch:2009, author = "Duncan Murdoch", title = "Parsing Rd files", year = 2009, url = "http://developer.r-project.org/parseRd.pdf" } bibtex/inst/bib/issue15.bib0000644000176200001440000000020014313223106015177 0ustar liggesusers@Article{newspaper, author = {Author Smith}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, } bibtex/inst/bib/methods.bib0000644000176200001440000000074714313223106015364 0ustar liggesusers @book{chambers:2008, author = "Chambers, John M.", year = 2008, title = "Software for Data Analysis: Programming with R", publisher = "Springer" } @book{chambers:1998, author = "Chambers, John M.", year = 1998, title = "Programming with Data", publisher = "Springer" } @misc{chambers:2009, author = "Chambers, John M.", year = 2009, title = "Developments in Class Inheritance and Method Selection", url = "http://stat.stanford.edu/~jmc4/classInheritance.pdf" } bibtex/inst/bib/grDevices.bib0000644000176200001440000000756514313223106015641 0ustar liggesusersencoding = "utf-8" @String{ JASA = "Journal of the American Statistical Association" } @book{tukey:1977, author = "Tukey, J. W.", year = 1977, title = "Exploratory Data Analysis", publisher = "Addison Wesley" } @article{mcgill+tukey+larsen:1978, author = "McGill, R. and Tukey, J. W. and Larsen, W. A.", year = 1978, title = "Variations of box plots", journal = "The American Statistician", edition = 32, pages = "12--16" } @book{velleman+hoaglin:1981, author = "Velleman, P. F. and Hoaglin, D. C.", year = 1981, title = "Applications, Basics and Computing of Exploratory Data Analysis", publisher = "Duxbury Press" } @inbook{emerson+strenio:1983, author = "Emerson, J. D and Strenio, J.", year = 1983, chapter = "Boxplots and batch comparison", editor = "D. C. Hoaglin, F. Mosteller and J. W. Tukey", publisher = "Wiley", title = "Understanding Robust and Exploratory Data Analysis", } @book{chambers+cleveland+kleiner+tukey:1983, author = "Chambers, J. M. and Cleveland, W. S. and Kleiner, B. and Tukey, P. A.", year = 1983, title = "Graphical Methods for Data Analysis", publisher = "Wadsworth & Brooks/Cole" } @article{eddy:1977a, author = "Eddy, W. F.", year = 1977, title = "A new convex hull algorithm for planar sets", journal = "ACM Transactions on Mathematical Software", edition = 3, pages = "398--403" } @article{eddy:1977b, author = "Eddy, W. F.", year = 1977, title = "Algorithm 523. CONVEX, A new convex hull algorithm for planar sets[Z]", journal = "ACM Transactions on Mathematical Software", edition = 3, pages = "411--412" } @misc{conversion, url = "http://www.brucelindbloom.com/", author = "Bruce Justin Lindbloom", year = "2001--2009", title = "Bruce Lindbloom website" } @misc{whitepoints, url = "http://www.efg2.com/Lab/Graphics/Colors/Chromaticity.htm", author = "", title = "efg's Chromaticity Diagrams Lab Report", year = 2005 } @inproceedings{ihaka:2003, author = "Ihaka, R.", year = 2003, title = "Colour for Presentation Graphics", booktitle = "Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003)", organization = "Technische Universität Wien, Vienna, Austria", url = "http://www.ci.tuwien.ac.at/Conferences/DSC-2003" } @misc{plotutils, author = "{The Free Software Foundation}", url = "http://www.gnu.org/software/plotutils/plotutils.html", title = "The plotutils package" } @article{freedman+diaconis:1981, author = "Freedman, D. and Diaconis, P.", year = 1981, title = "On the histogram as a density estimator: L_2 theory", journal = "Zeitschrift für Wahrscheinlichkeitstheorie und verwandte Gebiete", edition = "57", pages = "453--476" } @article{scott:1979, author = "Scott, D. W.", year = 1979, title = "On optimal and data-based histograms", journal = "Biometrika", edition = 66, pages = "605--610" } @book{scott:1992, author = "Scott, D. W.", year = 1992, title = "Multivariate Density Estimation. Theory, Practice, and Visualization", publisher = "Wiley" } @article{sturges:1926, author = "Sturges, H. A.", year = 1926, title = "The choice of a class interval", journal = JASA, edition = 21, pages = "65--66" } @book{knuth:1984, author = "Knuth, D. E.", year = 1984, title = "The TeXbook", address = "Reading, MA", publisher = "Addison-Wesley" } @book{lamport:1994, author = "Lamport, L.", year = 1994, title = "{LATEX}: A Document Preparation System", address = "Reading, MA", publisher = "Addison-Wesley" } @book{goossens+mittelbach+Samarin:1994, author = "Goossens, M. and Mittelbach, F. and Samarin, A.", year = 1994, title = "The {LATEX} Companion.", address = "Reading, MA", publisher = "Addison-Wesley" } @article{murrell+ihaka:2000, author = "Murrell, P. and Ihaka, R.", year = 2000, title = "An approach to providing mathematical annotation in plots", journal = "Journal of Computational and Graphical Statistics", edition = 9, pages = "582--599" } bibtex/inst/bib/utils.bib0000644000176200001440000000122614313223106015052 0ustar liggesusers @book{nijenhuis+wilf:1978, author = "Nijenhuis, A. and Wilf, H.S.", year = 1978, title = "Combinatorial Algorithms for Computers and Calculators", publisher = "Academic Press", address = "New York" } @book{robbins+robbins:1995, author = {Robbins, Kay A. and Robbins, Steven }, edition = {1st}, howpublished = {Hardcover}, isbn = {0134437063}, keywords = {programming, unix}, month = {November}, publisher = {Prentice Hall PTR}, title = {Practical UNIX Programming}, year = {1995} } @manual{leisch:2008, author = "Friedrich Leisch", title = "Sweave User Manual", year = 2008, url = "http://www.stat.uni-muenchen.de/~leisch/Sweave" } bibtex/inst/bib/xampl_single.bib0000644000176200001440000000043614313223106016376 0ustar liggesusers@ARTICLE{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = 1986, volume = 41, number = 7, pages = "73+", month = jul, note = "This is a full ARTICLE entry", } bibtex/inst/bib/issue9.bib0000644000176200001440000000013614313223106015132 0ustar liggesusers@Misc{key?, author = "Smith, Bob", title = "The Title", year = 2012 } bibtex/inst/bib/graphics.bib0000644000176200001440000001135114313223106015512 0ustar liggesusers@String{ JASA = "Journal of the American Statistical Association" } @book{murrell:2005, author = "Murrell, P.", year = 2005, title = "R Graphics", publisher = "Chapman & Hall/CRC Press" } @article{cohen:1980, author = "Cohen, A.", year = 1980, title = "On the graphical display of the significant components in a two-way contingency table", journal = "Communications in Statistics---Theory and Methods", edition = "A9", pages = "1025--1041" } @article{friendly:1992, title = "Graphical methods for categorical data", journal = "SAS User Group International Conference Proceedings", edition = 17, pages = "190--200", url = "http://www.math.yorku.ca/SCS/sugi/sugi17-paper.html", year = 1982, author = "Friendly, M." } @techreport{meyer+zeileis+hornik:2005, author = "Meyer, D. and Zeileis, A. and Hornik, K.", year = 2005, title = "The strucplot framework: Visualizing multi-way contingency tables with vcd", note = "Report 22, Research Report Series", institution = "Department of Statistics and Mathematics, Wirtschaftsuniversität, Wien", url = "http://epub.wu-wien.ac.at/dyn/openURL?id=oai:epub.wu-wien.ac.at:epub-wu-01_8a1" } @book{chambers+cleveland+kleiner+tukey:1983, author = "Chambers, J. M. and Cleveland, W. S. and Kleiner, B. and Tukey, P. A.", year = 1983, title = "Graphical Methods for Data Analysis", publisher = "Wadsworth & Brooks/Cole" } @misc{hofmann+theus:2005, author = "Hofmann, H. and Theus, M.", year = 2005, title = "Interactive graphics for visualizing conditional distributions", note = "Unpublished Manuscript" } @book{cleveland:1993, author = "Cleveland, W. S.", year = 1993, title = "Visualizing Data", address = "New Jersey", publisher = "Summit Press" } @book{cleveland:1985, author = "Cleveland, W. S.", year = 1985, title = "The Elements of Graphing Data", address = "Monterey, CA", publisher = "Wadsworth" } @book{cleveland:1993, author = "Cleveland, W. S.", year = 1993, title = "Visualizing Data", address = "New Jersey: Hobart", publisher = "Summit Press" } @techreport{friendly:1994, author = "Friendly, M.", year = 1994, title = "A fourfold display for 2 by 2 by k tables", note = "Technical Report 217", institution = "York University, Psychology Department", url = "http://www.math.yorku.ca/SCS/Papers/4fold/4fold.ps.gz" } @article{murrell:1999, author = "Murrell, P. R.", year = 1999, title = "Layouts: A mechanism for arranging plots on a page", journal = "Journal of Computational and Graphical Statistics", edition = 8, pages = "121-134" } @article{hartigan+kleiner:1984, author = "Hartigan, J.A. and Kleiner, B.", year = 1984, title = "A mosaic of television ratings", journal = "The American Statistician", edition = 38, pages = "32--35" } @article{emerson:1998, author = "Emerson, J. W.", year = 1998, title = "Mosaic displays in S-PLUS: A general implementation and a case study", journal = "Statistical Computing and Graphics Newsletter (ASA)", edition = "9", number = 1, pages = "17--23" } @article{friendly:1994, author = "Friendly, M.", year = 1994, title = "Mosaic displays for multi-way contingency tables", journal = JASA, edition = 89, pages = "190--200" } @misc{friendly, author = "Friendly, M.", url = "http://www.math.yorku.ca/SCS/friendly.html", title = "The home page of Michael Friendly" } @book{cleveland:1985, author = "Cleveland, W. S.", year = 1985, title = "The elements of graphing data", address = "Monterey, CA, USA", publisher = "Wadsworth" } @article{freeny+landwehr:1990, author = "Freeny, A. E. and Landwehr, J. M.", year = 1990, title = "Displays for data from large designed experiments", journal = "Computer Science and Statistics: Proc.{ }22nd Symp.{ }Interface", pages = "117--126", publisher = "Springer Verlag" } @book{chambers+hastie:1992, author = "Chambers, J. M. and Hastie, T. J.", year = 1992, title = "Statistical Models in S", publisher = "Wadsworth & Brooks/Cole" } @article{hummel:1996, author = "Hummel, J.", year = 1996, title = "Linked bar charts: Analysing categorical data graphically", journal = "Computational Statistics", edition = 11, pages = "23--33" } @article{schilling+watkins:1994, author = "Schilling, M. F. and Watkins, A. E.", year = 1994, title = "A suggestion for sunflower plots", journal = "The American Statistician", edition = 48, pages = "303--305" } @inproceedings{blanc+schlick:1995, author = "Blanc, C. and Schlick, C.", year = 1995, title = "X-splines : A Spline Model Designed for the End User", booktitle = "Proceedings of SIGGRAPH 95", pages = "377--386", url = "http://dept-info.labri.fr/~schlick/DOC/sig1.html" } @phdthesis{murrell:1988, author = {Paul Murrell}, title = {Investigations in Graphical Statistics}, school = {The University of Auckland}, year = {1998} } bibtex/inst/bib/xampl_mod.bib0000644000176200001440000002362514313223106015701 0ustar liggesusers% Copyright (C) 1988, 2010 Oren Patashnik. % Unlimited copying and redistribution of this file are permitted if it % is unmodified. Modifications (and their redistribution) are also % permitted, as long as the resulting file is renamed. @preamble{ "\newcommand{\noopsort}[1]{} " # "\newcommand{\printfirst}[2]{#1} " # "\newcommand{\singleletter}[1]{#1} " # "\newcommand{\switchargs}[2]{#2#1} " } @ARTICLE{article-minimal, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = 1986, } @ARTICLE{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = 1986, volume = 41, number = 7, pages = "73+", month = jul, note = "This is a full ARTICLE entry", } The KEY field is here to override the KEY field in the journal being cross referenced (so is the NOTE field, in addition to its imparting information). @COMMENT{article-crossref, crossref = {WHOLE-JOURNAL}, key = "", author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, pages = "73+", note = "This is a cross-referencing ARTICLE entry", } @ARTICLE{whole-journal, key = "GAJ", journal = {\mbox{G-Animal's} Journal}, year = 1986, volume = 41, number = 7, month = jul, note = {The entire issue is devoted to gnats and gnus (this entry is a cross-referenced ARTICLE (journal))}, } @INBOOK{inbook-minimal, author = "Donald E. Knuth", title = "Fundamental Algorithms", publisher = "Addison-Wesley", year = "{\noopsort{1973b}}1973", chapter = "1.2", } @INBOOK{inbook-full, author = "Donald E. Knuth", title = "Fundamental Algorithms", volume = 1, series = "The Art of Computer Programming", publisher = "Addison-Wesley", address = "Reading, Massachusetts", edition = "Second", month = "10~" # jan, year = "{\noopsort{1973b}}1973", type = "Section", chapter = "1.2", pages = "10--119", note = "This is a full INBOOK entry", } @INBOOK{inbook-crossref, crossref = "whole-set", title = "Fundamental Algorithms", volume = 1, series = "The Art of Computer Programming", edition = "Second", year = "{\noopsort{1973b}}1973", type = "Section", chapter = "1.2", note = "This is a cross-referencing INBOOK entry", } @BOOK{book-minimal, author = "Donald E. Knuth", title = "Seminumerical Algorithms", publisher = "Addison-Wesley", year = "{\noopsort{1973c}}1981", } @BOOK{book-full, author = "Donald E. Knuth", title = "Seminumerical Algorithms", volume = 2, series = "The Art of Computer Programming", publisher = "Addison-Wesley", address = "Reading, Massachusetts", edition = "Second", month = "10~" # jan, year = "{\noopsort{1973c}}1981", note = "This is a full BOOK entry", } @BOOK{book-crossref, crossref = "whole-set", title = "Seminumerical Algorithms", volume = 2, series = "The Art of Computer Programming", edition = "Second", year = "{\noopsort{1973c}}1981", note = "This is a cross-referencing BOOK entry", } @BOOK{whole-set, author = "Donald E. Knuth", publisher = "Addison-Wesley", title = "The Art of Computer Programming", series = "Four volumes", year = "{\noopsort{1973a}}{\switchargs{--90}{1968}}", note = "Seven volumes planned (this is a cross-referenced set of BOOKs)", } @BOOKLET{booklet-minimal, key = "Kn{\printfirst{v}{1987}}", title = "The Programming of Computer Art", } @BOOKLET{booklet-full, author = "Jill C. Knvth", title = "The Programming of Computer Art", howpublished = "Vernier Art Center", address = "Stanford, California", month = feb, year = 1988, note = "This is a full BOOKLET entry", } @INCOLLECTION{incollection-minimal, author = "Daniel D. Lincoll", title = "Semigroups of Recurrences", booktitle = "High Speed Computer and Algorithm Organization", publisher = "Academic Press", year = 1977, } @INCOLLECTION{incollection-full, author = "Daniel D. Lincoll", title = "Semigroups of Recurrences", editor = "David J. Lipcoll and D. H. Lawrie and A. H. Sameh", booktitle = "High Speed Computer and Algorithm Organization", number = 23, series = "Fast Computers", chapter = 3, type = "Part", pages = "179--183", publisher = "Academic Press", address = "New York", edition = "Third", month = sep, year = 1977, note = "This is a full INCOLLECTION entry", } @INCOLLECTION{incollection-crossref, crossref = "whole-collection", author = "Daniel D. Lincoll", title = "Semigroups of Recurrences", pages = "179--183", note = "This is a cross-referencing INCOLLECTION entry", } @BOOK{whole-collection, editor = "David J. Lipcoll and D. H. Lawrie and A. H. Sameh", title = "High Speed Computer and Algorithm Organization", booktitle = "High Speed Computer and Algorithm Organization", number = 23, series = "Fast Computers", publisher = "Academic Press", address = "New York", edition = "Third", month = sep, year = 1977, note = "This is a cross-referenced BOOK (collection) entry", } @MANUAL{manual-minimal, key = "Manmaker", title = "The Definitive Computer Manual", } @MANUAL{manual-full, author = "Larry Manmaker", title = "The Definitive Computer Manual", organization = "Chips-R-Us", address = "Silicon Valley", edition = "Silver", month = apr # "-" # may, year = 1986, note = "This is a full MANUAL entry", } @MASTERSTHESIS{mastersthesis-minimal, author = "{\'{E}}douard Masterly", title = "Mastering Thesis Writing", school = "Stanford University", year = 1988, } @MASTERSTHESIS{mastersthesis-full, author = "{\'{E}}douard Masterly", title = "Mastering Thesis Writing", school = "Stanford University", type = "Master's project", address = "English Department", month = jun # "-" # aug, year = 1988, note = "This is a full MASTERSTHESIS entry", } @MISC{misc-minimal, key = "Missilany", note = "This is a minimal MISC entry", } @MISC{misc-full, author = "Joe-Bob Missilany", title = "Handing out random pamphlets in airports", howpublished = "Handed out at O'Hare", month = oct, year = 1984, note = "This is a full MISC entry", } @STRING{STOC-key = "OX{\singleletter{stoc}}"} @STRING{ACM = "The OX Association for Computing Machinery"} @STRING{STOC = " Symposium on the Theory of Computing"} @INPROCEEDINGS{inproceedings-minimal, author = "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis", title = "On Notions of Information Transfer in {VLSI} Circuits", booktitle = "Proc. Fifteenth Annual ACM" # STOC, year = 1983, } @INPROCEEDINGS{inproceedings-full, author = "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis", title = "On Notions of Information Transfer in {VLSI} Circuits", editor = "Wizard V. Oz and Mihalis Yannakakis", booktitle = "Proc. Fifteenth Annual ACM" # STOC, number = 17, series = "All ACM Conferences", pages = "133--139", month = mar, year = 1983, address = "Boston", organization = ACM, publisher = "Academic Press", note = "This is a full INPROCEDINGS entry", } @INPROCEEDINGS{inproceedings-crossref, crossref = "whole-proceedings", author = "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis", title = "On Notions of Information Transfer in {VLSI} Circuits", organization = "", pages = "133--139", note = "This is a cross-referencing INPROCEEDINGS entry", } @PROCEEDINGS{proceedings-minimal, key = STOC-key, title = "Proc. Fifteenth Annual" # STOC, year = 1983, } @PROCEEDINGS{proceedings-full, editor = "Wizard V. Oz and Mihalis Yannakakis", title = "Proc. Fifteenth Annual" # STOC, number = 17, series = "All ACM Conferences", month = mar, year = 1983, address = "Boston", organization = ACM, publisher = "Academic Press", note = "This is a full PROCEEDINGS entry", } @PROCEEDINGS{whole-proceedings, key = STOC-key, organization = ACM, title = "Proc. Fifteenth Annual" # STOC, address = "Boston", year = 1983, booktitle = "Proc. Fifteenth Annual ACM" # STOC, note = "This is a cross-referenced PROCEEDINGS", } @PHDTHESIS{phdthesis-minimal, author = "F. Phidias Phony-Baloney", title = "Fighting Fire with Fire: Festooning {F}rench Phrases", school = "Fanstord University", year = 1988, } @PHDTHESIS{phdthesis-full, author = "F. Phidias Phony-Baloney", title = "Fighting Fire with Fire: Festooning {F}rench Phrases", school = "Fanstord University", type = "{PhD} Dissertation", address = "Department of French", month = jun # "-" # aug, year = 1988, note = "This is a full PHDTHESIS entry", } @TECHREPORT{techreport-minimal, author = "Tom Terrific", title = "An {$O(n \log n / \! \log\log n)$} Sorting Algorithm", institution = "Fanstord University", year = 1988, } @TECHREPORT{techreport-full, author = "Tom T{\'{e}}rrific", title = "An {$O(n \log n / \! \log\log n)$} Sorting Algorithm", institution = "Fanstord University", type = "Wishful Research Result", number = "7", address = "Computer Science Department, Fanstord, California", month = oct, year = 1988, note = "This is a full TECHREPORT entry", } @UNPUBLISHED{unpublished-minimal, author = "Ulrich {\"{U}}nderwood and Ned {\~N}et and Paul {\={P}}ot", title = "Lower Bounds for Wishful Research Results", note = "Talk at Fanstord University (this is a minimal UNPUBLISHED entry)", } @UNPUBLISHED{unpublished-full, author = "Ulrich {\"{U}}nderwood and Ned {\~N}et and Paul {\={P}}ot", title = "Lower Bounds for Wishful Research Results", month = nov # ", " # dec, year = 1988, note = "Talk at Fanstord University (this is a full UNPUBLISHED entry)", } @MISC{random-note-crossref, key = {Volume-2}, note = "Volume~2 is listed under Knuth \cite{book-full}" } bibtex/inst/bib/xampl_preamble.bib0000644000176200001440000000102714313223106016701 0ustar liggesusers% Copyright (C) 1988, 2010 Oren Patashnik. % Unlimited copying and redistribution of this file are permitted if it % is unmodified. Modifications (and their redistribution) are also % permitted, as long as the resulting file is renamed. @String {maintainer = "Xavier Albert"} @preamble { "Maintained by " # maintainer } @ARTICLE{article-minimal, author = {L[eslie] A. Aamport}, maintainer = maintainer, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = 1986, } bibtex/inst/bib/datasets.bib0000644000176200001440000001663014313223106015527 0ustar liggesusersencoding = "utf-8" @String{ BSSA = "Bull. Seism. Soc. Am." } @String{ JRSS = "Journal of the Royal Statistical Society" } @article{smith+stanley:1983, author = "Smith, G. A. and Stanley G.", year = "1983", title = "Clocking g: relating intelligence and measures of timed performance", journal= "Intelligence", edition = 7, pages = "353--368" } @book{brown:1963, author = "Brown, R. G.", title = "Smoothing, Forecasting and Prediction of Discrete Time Series", year = 1963, publisher = "Prentice-Hall" } @book{chambers+cleveland+kleiner+tukey:1983, author = "Chambers, J. M. and Cleveland, W. S. and Kleiner, B. and Tukey, P. A.", year = 1983, title = "Graphical Methods for Data Analysis", address = "Belmont, CA", publisher = "Wadsworth" } @article{anscombe:1973, author = "Anscombe, Francis J.", year = 1973, journal = "American Statistician", edition = 27, pages = "17--21", title = "Graphs in statistical analysis" } @article{boore+joyner:1982, author = "Boore, D. M. and Joyner, W.B.", year = 1982, title = "The empirical prediction of ground motion", journal = BSSA, edition = 72, pages = "S269--S268" } @article{bolt+abrahamson:1982, author = "Bolt, B. A. and Abrahamson, N. A.", year = 1982, title = "New attenuation relations for peak and expected accelerations of strong ground motion", journal = BSSA, edition = 72, pages = "2307--2321" } @article{bolt+abrahamson:1983, year = 1983, title = "Reply to W. B. Joyner & D. M. Boore's", note = "Comments on: New attenuation relations for peak and expected accelerations for peak and expected accelerations of strong ground motion", journal = BSSA, edition = 73, pages = "1481--1483", author = "Bolt B. A. and Abrahamson, N. A." } @article{brillinger+preisler:1984, author = "Brillinger, D. R. and Preisler, H. K.", year = "1984", title = "An exploratory analysis of the Joyner-Boore attenuation data", journal = BSSA, edition = 74, pages = "1441--1449" } @misc{brillinger+preisler:1984-2, author = "Brillinger, D. R. and Preisler, H. K.", year = "1984", title = "Further analysis of the Joyner-Boore attenuation data", note = "Manuscript" } @book{box+jenkins:1976, author = "G. E. P. Box and G. M. Jenkins", year = "1976", title = "Time Series Analysis, Forecasting and Control", publisher = "Holden-Day", address = "San Francisco" } @book{brockwell+davis:1991, author="P. J. Brockwell and R. A. Davis", year = 1991, title = "Time Series: Theory and Methods", edition = "Second edition", publisher = "Springer Verlag", address = "New York" } @book{mcneil:1977, author = "McNeil, D. R.", title = "Interactive Data Analysis", year = 1977, publisher = "Wiley", address = "New York" } @book{cleveland:1993, author = "Cleveland, W. S.", title = "Visualizing Data", year = 1993, publisher = "Summit Press", address = "New Jersey" } @article{garson:1900, title = "The metric system of identification of criminals, as used in in Great Britain and Ireland", author = "Garson, J.G.", year = 1900, journal = "The Journal of the Anthropological Institute of Great Britain and Ireland", edition = 30, number = 2, pages = "177--227" } @article{macdonell:1902, author = "MacDonell, W.R.", year = 1902, title = "On criminal anthropometry and the identification of criminals", journal = "Biometrika", edition = 1, number = 2, pages = "177--227" } @article{student:1908, author = "Student", year = 1908, title = "The probable error of a mean", journal = "Biometrika", edition = 6, pages = "1--25" } @book{haerdle:1991, author = "H{\"a}rdle, W.", year = 1991, title = "Smoothing Techniques with Implementation in S", publisher = "Springer", address = "New York" } @article{azzalini+bowman:1990, author = "Azzalini, A. and Bowman, A. W.", year = 1990, title = "A look at some data on the Old Faithful geyser", journal = "Applied Statistics", edition = 39, pages = "357--365" } @article{snee:1974, author = "Snee, R. D.", year = 1974, title = "Graphical display of two-way contingency tables", journal = "The American Statistician", edition = 28, pages = "9--12" } @article{friendly:1992a, author = "Friendly, M.", year = "1992a", title = "Graphical methods for categorical data", journal = "SAS User Group International Conference Proceedings", edition = 17, pages = "190--200", url = "http://www.math.yorku.ca/SCS/sugi/sugi17-paper.html" } @article{friendly:1992b, author = "Friendly, M.", year = "1992b", title = "Mosaic displays for loglinear models", journal = "Proceedings of the Statistical Graphics Section", institution = "American Statistical Association", pages = "61--68", url = "http://www.math.yorku.ca/SCS/Papers/asa92.html" } @book{friendly:2000, author = "Friendly, M.", year = 2000, title = "Visualizing Categorical Data", publisher = "SAS Institute", ISBN = "1-58025-660-0" } @misc{sterling:1977, author = "Sterling, Arnie", year = 1977, note = "Unpublished BS Thesis", institution = "Massachusetts Institute of Technology" } @book{belsley+kuh+welsch:1980, author = "Belsley, D. A., Kuh. E. and Welsch, R. E.", year = 1980, title = "Regression Diagnostics", address = "New York", publisher = "Wiley" } @article{campbell+Walker:1977, author = "Campbell, M. J. and A. M. Walker", year = 1977, title = "A Survey of statistical work on the Mackenzie River series of annual Canadian lynx trappings for the years 1821--1934 and a new analysis", journal = JRSS, series = "A", edition = 140, pages = "411--431" } @article{balke:1983, author = "Balke, N. S.", year = 1993, title = "Detecting level shifts in time series", journal = "Journal of Business and Economic Statistics", edition = 11, pages = "81--92" } @article{cobb:1978, author = "Cobb, G. W.", year = 1978, title = "The problem of the Nile: conditional solution to a change-point problem", journal = "Biometrika", edition = 65, pages = "243--51" } @book{scheffe:1959, author = "Scheff{\'e}, Henry", year = 1959, title = "The Analysis of Variance", publisher = "Wiley", address = "New York" } @article{dodge:1996, author = "Dodge, Y.", year = 1996, title = "The guinea pig of multiple regression", note = "In: Robust Statistics, Data Analysis, and Computer Intensive Methods; In Honor of Peter Huber's 60th Birthday", journal = "Lecture Notes in Statistics", edition = 109, publisher = "Springer-Verlag", address = "New York" } @book{atkinson:1985, author = "Atkinson, A. C.", year = 1985, title = "Plots, Transformations and Regression", publisher = "Oxford University Press" } @article{bickel+hammel+oconnell:1975, author = "Bickel, P. J. and Hammel, E. A. and O'Connell, J. W.", year = 1975, title = "Sex bias in graduate admissions: Data from Berkeley", journal = "Science", edition = 187, pages = "398--403" } @article{harvey+Durbin:1986, author = "Harvey, A. C. and Durbin, J.", year = 1986, title = "The effects of seat belt legislation on British road casualties: A case study in structural time series modelling", journal = JRSS, series = "B", edition = 149, pages = "187--227" } @book{tukey:1977, author = "Tukey, J. W.", year = 1977, title = "Exploratory Data Analysis", publisher = "Addison-Wesley" } @book{mcneil:1977, author = "McNeil, D. R.", year = 1977, title = "Interactive Data Analysis", publisher = "Wiley" } @book{makridakis+wheelwright+hyndma:1998, author = "Makridakis, S. and Wheelwright, S. C. and Hyndman, R. J.", year = 1998, title = "Forecasting: Methods and Applications", publisher = "Wiley" } bibtex/inst/bib/xampl_standard.bib0000644000176200001440000001116014313223106016711 0ustar liggesusers% Copyright (C) 1988, 2010 Oren Patashnik. % Unlimited copying and redistribution of this file are permitted if it % is unmodified. Modifications (and their redistribution) are also % permitted, as long as the resulting file is renamed. % Source: https://tug.org/texmf-docs/bibtex/xampl.bib @ARTICLE{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System}, journal = {\mbox{G-Animal's} Journal}, year = 1986, volume = 41, number = 7, pages = "73+", month = jul, note = "This is a full ARTICLE entry", } @BOOK{book-full, author = "Donald E. Knuth", title = "Seminumerical Algorithms", volume = 2, series = "The Art of Computer Programming", publisher = "Addison-Wesley", address = "Reading, Massachusetts", edition = "Second", month = "10~" # jan, year = "{\noopsort{1973c}}1981", note = "This is a full BOOK entry", } @BOOKLET{booklet-full, author = "Jill C. Knvth", title = "The Programming of Computer Art", howpublished = "Vernier Art Center", address = "Stanford, California", month = feb, year = 1988, note = "This is a full BOOKLET entry", } @INBOOK{inbook-full, author = "Donald E. Knuth", title = "Fundamental Algorithms", volume = 1, series = "The Art of Computer Programming", publisher = "Addison-Wesley", address = "Reading, Massachusetts", edition = "Second", month = "10~" # jan, year = "{\noopsort{1973b}}1973", type = "Section", chapter = "1.2", pages = "10--119", note = "This is a full INBOOK entry", } @INCOLLECTION{incollection-full, author = "Daniel D. Lincoll", title = "Semigroups of Recurrences", editor = "David J. Lipcoll and D. H. Lawrie and A. H. Sameh", booktitle = "High Speed Computer and Algorithm Organization", number = 23, series = "Fast Computers", chapter = 3, type = "Part", pages = "179--183", publisher = "Academic Press", address = "New York", edition = "Third", month = sep, year = 1977, note = "This is a full INCOLLECTION entry", } @INPROCEEDINGS{inproceedings-full, author = "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis", title = "On Notions of Information Transfer in {VLSI} Circuits", editor = "Wizard V. Oz and Mihalis Yannakakis", booktitle = "Proc. Fifteenth Annual ACM", number = 17, series = "All ACM Conferences", pages = "133--139", month = mar, year = 1983, address = "Boston", organization = ACM, publisher = "Academic Press", note = "This is a full INPROCEDINGS entry", } @MANUAL{manual-full, author = "Larry Manmaker", title = "The Definitive Computer Manual", organization = "Chips-R-Us", address = "Silicon Valley", edition = "Silver", month = apr # "-" # may, year = 1986, note = "This is a full MANUAL entry", } @MASTERSTHESIS{mastersthesis-full, author = "{\'{E}}douard Masterly", title = "Mastering Thesis Writing", school = "Stanford University", type = "Master's project", address = "English Department", month = jun # "-" # aug, year = 1988, note = "This is a full MASTERSTHESIS entry", } @MISC{misc-full, author = "Joe-Bob Missilany", title = "Handing out random pamphlets in airports", howpublished = "Handed out at O'Hare", month = oct, year = 1984, note = "This is a full MISC entry", } @PHDTHESIS{phdthesis-full, author = "F. Phidias Phony-Baloney", title = "Fighting Fire with Fire: Festooning {F}rench Phrases", school = "Fanstord University", type = "{PhD} Dissertation", address = "Department of French", month = jun # "-" # aug, year = 1988, note = "This is a full PHDTHESIS entry", } @PROCEEDINGS{proceedings-full, editor = "Wizard V. Oz and Mihalis Yannakakis", title = "Proc. Fifteenth Annual" # STOC, number = 17, series = "All ACM Conferences", month = mar, year = 1983, address = "Boston", organization = ACM, publisher = "Academic Press", note = "This is a full PROCEEDINGS entry", } @TECHREPORT{techreport-full, author = "Tom T{\'{e}}rrific", title = "An {$O(n \log n / \! \log\log n)$} Sorting Algorithm", institution = "Fanstord University", type = "Wishful Research Result", number = "7", address = "Computer Science Department, Fanstord, California", month = oct, year = 1988, note = "This is a full TECHREPORT entry", } @UNPUBLISHED{unpublished-full, author = "Ulrich {\"{U}}nderwood and Ned {\~N}et and Paul {\={P}}ot", title = "Lower Bounds for Wishful Research Results", month = nov # ", " # dec, year = 1988, note = "Talk at Fanstord University (this is a full UNPUBLISHED entry)", } bibtex/inst/bib/stats.bib0000644000176200001440000010623514313223106015056 0ustar liggesusers@String{ JASA = "Journal of the American Statistical Association" } @String{ JSSR = "Journal of the Royal Statistical Society" } @String{ JSS = "Journal of Statistical Software" } @book{sakamoto+ishiguro+kitagawa:1986, author = "Sakamoto, Y. and Ishiguro, M. and Kitagawa G.", year = 1986, title = "Akaike Information Criterion Statistics", publisher = "Reidel Publishing Company" } @inbook{chambers+freeny+heiberger:1992, author = "Chambers, J. M. and Freeny, A. and Heiberger, R. M.", title = "Statistical Models in S", chapter = "Analysis of variance; designed experiments", editor = "J. M. Chambers and T. J. Hastie", year = 1992, publisher = "Wadsworth & Brooks/Cole" } @inbook{hastie+pregibon:1992, author = "Hastie, T. J. and Pregibon, D.", title = "Statistical Models in S", editor = "J. M. Chambers and T. J. Hastie", year = 1992, publisher = "Wadsworth & Brooks/Cole", chapter = "Generalized linear models" } @inbook{chambers:1992:chap4, author = "Chambers, J. M.", chapter = "Linear models", editor = "J. M. Chambers and T. J. Hastie", year = 1992, publisher = "Wadsworth & Brooks/Cole", title= "Statistical Models in S" } @inbook{bates+chambers:1992, author = "Bates, D. M. and Chambers, J. M.", year = 1992, title = "Statistical Models in S", chapter = "Nonlinear models", editor = "J. M. Chambers and T. J. Hastie", publisher = "Wadsworth & Brooks/Cole" } @inbook{chambers+hastie:1992, author = "Chambers, J. M. and Hastie, T. J.", year = 1992, title = "Statistical Models in S", chapter = "Statistical models", editor = "J. M. Chambers and T. J. Hastie", publisher = "Wadsworth & Brooks/Cole" } @inbook{chambers:1992, author = "Chambers, J. M.", year = 1992, title = "Statistical Models in S", chapter = "Data for models", editor = "J. M. Chambers and T. J. Hastie", publisher = "Wadsworth & Brooks/Cole" } @inbook{chambers:1992, author = "Cleveland, W. S. and Grosse, E. and Shyu, W. M.", year = 1992, title = "Statistical Models in S", chapter = "Local regression", editor = "J. M. Chambers and T. J. Hastie", publisher = "Wadsworth & Brooks/Cole" } @book{hand+taylor:1987, author = "Hand, D. J. and Taylor, C. C.", title = "Multivariate Analysis of Variance and Repeated Measures", year = 1987, publisher = "Chapman and Hall" } @article{bauer:1972, author = "Bauer, David F.", year = 1972, title = "Constructing confidence sets using rank statistics", journal = JASA, edition = 67, pages = "687--690" } @book{hajek+sidak+sen:1999, author = "Hajek, Jaroslav and Sidak, Zbynek and Sen, Pranab K.", year = 1999, title = "Theory of Rank Tests", address = "San Diego, London", publisher = "Academic Press" } @book{brockwell+davis:1996, author = "Brockwell, P. J. and Davis, R. A.", year = 1996, title = "Introduction to Time Series and Forecasting", publisher = "Springer", address = "New York" } @article{gardner+harvey+phillips:1980, author = "Gardner, G. and Harvey, A. C. and Phillips, G. D. A.", year = 1980, title = "Algorithm AS154. An algorithm for exact maximum likelihood estimation of autoregressive-moving average models by means of Kalman filtering", journal = "Applied Statistics", edition = 29, pages = "311--322" } @book{harvey:1993, author = "Harvey, A. C.", year = 1993, title = "Time Series Models", edition = "2nd Edition", publisher = "Harvester Wheatsheaf" } @article{harvey+mckenzie:1982, author = "Harvey, A. C. and McKenzie, C. R.", year = 1982, title = "Algorithm AS182. An algorithm for finite sample prediction from ARIMA processes", journal = "Applied Statistics", edition = 31, pages = "180--187" } @article{jones:1980, author = "Jones, R. H.", year = 1980, title = "Maximum likelihood fitting of ARMA models to time series with missing observations", journal = "Technometrics", edition = 20, pages = "389--395" } @book{durbin+koopman:2001, author = "Durbin, J. and Koopman, S. J.", year = 2001, title = "Time Series Analysis by State Space Methods", publisher = "Oxford University Press" } @article{gardener+harvey+phillips:1980, author = "Gardner, G and Harvey, A. C. and Phillips, G. D. A.", year = 1980, title = "Algorithm AS154. An algorithm for exact maximum likelihood estimation of autoregressive-moving average models by means of Kalman filtering.", journal = "Applied Statistics", edition = 29, pages = "311--322" } @book{brockwell+davis:1991, author = "Brockwell, P. J. and Davis, R. A.", year = 1991, title = "Time Series: Theory and Methods", edition = "Second Edition", publisher = "Springer" } @book{Luetkepohl:1991, author = "Luetkepohl, H.", year = 1991, title = "Introduction to Multiple Time Series Analysis", publisher = "Springer Verlag", address = "New York" } @book{percival+walden:1998, author = "Percival, D. P. and Walden, A. T.", year = 1998, title = "Spectral Analysis for Physical Applications", publisher = "Cambridge University Press" } @article{whittle:1963, author = "Whittle, P.", year = 1963, title = "On the fitting of multivariate autoregressions and the approximate canonical factorization of a spectral density matrix", journal = "Biometrika", edition = 40, pages = "129--134" } @book{scott:1992, author = "Scott, D. W.", year = 1992, title = "Multivariate Density Estimation. Theory, Practice, and Visualization", publisher = "Wiley" } @article{sheather+jones:1991, author = "Sheather, S. J. and Jones, M. C.", year = 1991, title = "A reliable data-based bandwidth selection method for kernel density estimation", journal = JSSR, series = "B", edition = 53, pages = "683--690" } @book{silverman:1986, author = "Silverman, B. W.", year = 1986, title = "Density Estimation", address = "London", publisher = "Chapman and Hall" } @article{bartlett:1937, author = "Bartlett, M. S.", year = 1937, title = "Properties of sufficiency and statistical tests", journal = "Proceedings of the Royal Society of London", series = "A", edition = 160, pages = "268--282" } @book{abramowitz+stegun:1972, author = "Abramowitz, M. and Stegun, I. A.", year = 1972, title = "Handbook of Mathematical Functions", address = "New York", publisher = "Dover" } @book{johnson+balakrishnan:1995, author = "Johnson, N. L. and Kotz, S. and Balakrishnan, N.", year = 1995, title = "Continuous Univariate Distributions", publisher = "Wiley", address = "New York" } @article{clopper+pearson:1934, author = "Clopper, C. J. and Pearson, E. S.", year = 1934, title = "The use of confidence or fiducial limits illustrated in the case of the binomial", journal = "Biometrika", edition = 26, pages = "404--413" } @book{conover:1971, author = "William J. Conover", year = 1971, title = "Practical nonparametric statistics", address = "New York", publisher = "John Wiley & Sons", } @book{hollander+wolfe:1973, author = "Myles Hollander and Douglas A. Wolfe", year = 1973, title = "Nonparametric Statistical Methods", address = "New York", publisher = "John Wiley & Sons" } @article{gabriel:1971, author = "Gabriel, K. R.", year = 1971, title = "The biplot graphical display of matrices with applications to principal component analysis", journal = "Biometrika", edition = 58, pages = "453--467" } @article{gabriel+odoroff:1990, author = "Gabriel, K. R. and Odoroff, C. L.", year = 1990, title = "Biplots in biomedical research", journal = "Statistics in Medicine", edition = 9, pages = "469--485" } @book{gower+hand:1996, author = "J.C. Gower and D. J. Hand", year = 1996, title = "Biplots", publisher = "Chapman & Hall" } @article{diaconis+mosteller:1989, author = "Diaconis, P. and Mosteller F.", year = 1989, title = "Methods for studying coincidences", journal = JASA, edition = 84, pages = "853-861" } @article{box+pierce:1970, author = "Box, G. E. P. and Pierce, D. A.", year = 1970, title = "Distribution of residual correlations in autoregressive-integrated moving average time series models", journal = JASA, edition = 65, pages = "1509--1526" } @article{ljung+boc:1978, author = "Ljung, G. M. and Box, G. E. P.", year = 1978, title = "On a measure of lack of fit in time series models", journal = "Biometrika", edition = 65, pages = "297--303" } @article{hotelling:1936, author = "Hotelling H.", year = 1936, title = "Relations between two sets of variables", journal = "Biometrika", edition = 28, pages = "321--327" } @book{seber:1984, author = "Seber, G. A. F.", year = 1984, title = "Multivariate Observations", address = "New York", publisher = "Wiley" } @article{hope:1968, author = "Hope, A. C. A.", year = 1968, title = "A simplified Monte Carlo significance test procedure", journal = JSSR, series = "B", edition = 30, pages = "582--598" } @article{patefield:1981, author = "Patefield, W. M.", year = 1981, title = "Algorithm AS159. An efficient method of generating r x c tables with given row and column totals", journal = "Applied Statistics", edition = 30, pages = "91--97" } @article{cailliez:1983, author = "Cailliez, F.", year = 1983, title = "The analytical solution of the additive constant problem", journal = "Psychometrika", edition = 48, pages = "343--349" } @book{cox+cox:1994, author = "Cox, T. F. and Cox, M. A. A.", year = 1994, title = "Multidimensional Scaling", publisher = "Chapman and Hall" } @article{gower:1966, author = "Gower, J. C.", year = 1966, title = "Some distance properties of latent root and vector methods used in multivariate analysis", journal = "Biometrika", edition = 53, pages = "325--328" } @book{mardia+kent+bibby:1979, author = "Mardia, K. V. and Kent, J. T. and Bibby, J. M.", year = 1979, address = "London", publisher = "Academic Press", title = "Multivariate Analysis" } @book{torgerson:1958, author = "Torgerson, W. S.", year = 1958, title = "Theory and Methods of Scaling", address = "New York", publisher = "Wiley" } @book{lange:2001, author = "K. Lange", title = "Numerical Analysis for Statisticians", publisher = "Springer", year = 2001 } @book{brillinger:1981, author = "Brillinger, D. R.", year = 1981, title = "Time Series: Data Analysis and Theory", edition = "Second Edition", address = "San Francisco", publisher = "Holden-Day" } @book{sneath+sokal:1973, author = "Sneath, P.H.A. and Sokal, R.R.", year = 1973, title = "Numerical Taxonomy: The Principles and Practice of Numerical Classification", publisher = "Freeman", address = "San Francisco" } @article{best+roberts:1975, author = "D. J. Best and D. E. Roberts", year = 1975, title = "Algorithm AS 89: The Upper Tail Probabilities of Spearman's \eqn{\rho}{rho}", journal = "Applied Statistics", edition = 24, pages = "377--379" } @book{kendall+stuart:1983, author = "M. Kendall and A. Stuart", year = 1983, title = "The Advanced Theory of Statistics", volume = 3, publisher = "Griffin", pages = "410--414" } @article{griewank+corliss:1991, author = "Griewank, A. and Corliss, G. F.", year = 1991, title = "Automatic Differentiation of Algorithms: Theory, Implementation, and Application", journal = "SIAM proceedings", address = "Philadelphia" } @book{borg+groenen:1997, author = "Borg, I. and Groenen, P.", year = 1997, title = "Modern Multidimensional Scaling. Theory and Applications", publisher = "Springer" } @book{heiberger:1989, author = "Heiberger, R. M.", year = 1989, title = "Computation for the Analysis of Designed Experiments", publisher = "Wiley" } @article{bartlett:1937, author = "Bartlett, M. S.", year = 1937, title = "The statistical conception of mental factors", journal = "British Journal of Psychology", edition = 28, pages = "97--104" } @article{bartlett:1938, author = "Bartlett, M. S.", year = 1938, title = "Methods of estimating mental factors.", journal = "Nature", edition = 141, pages = "609--610" } @book{joreskog:1963, author = "J{\"o}reskog, K. G.", year = 1963, title = "Statistical Estimation in Factor Analysis", publisher = "Almqvist and Wicksell" } @book{lawley+maxwell:1971, author = "Lawley, D. N. and Maxwell, A. E.", year = 1971, title = "Factor Analysis as a Statistical Method", edition = "Second edition", publisher = "Butterworths" } @book{thomson:1951, author = "Thomson, G. H.", year = 1951, title = "The Factorial Analysis of Human Ability", publisher = "London University Press" } @book{mccullagh+nelder:1989, author = "McCullagh P. and Nelder, J. A.", year = 1989, title = "Generalized Linear Models", address ="London", publisher = "Chapman and Hall" } @book{dobson:1983, author= "Dobson, A. J.", year = 1983, title = "An Introduction to Statistical Modelling", address = "London", publisher = "Chapman and Hall" } @book{dobson:1990, author = "Dobson, A. J.", year = 1990, title = "An Introduction to Generalized Linear Models", address = "London", publisher = "Chapman and Hall" } @book{cox+snell:1981, author = "Cox, D. R. and Snell, E. J.", year = 1981, title = "Applied Statistics; Principles and Examples", address = "London", publisher = "Chapman and Hall" } @inproceedings{singleton:1979, author = "Singleton, R. C.", year = 1979, title = "Mixed Radix Fast Fourier Transforms", booktitle = "Programs for Digital Signal Processing", editor = "IEEE Digital Signal Processing Committee eds", organization = "IEEE Press" } @book{agresti:1990, author = "Agresti, A.", year = 1990, title = "Categorical data analysis", address = "New York", publisher = "Wiley" } @book{agresti:2002, author = "Agresti, A.", year = 2002, title = "Categorical data analysis", address = "New York", edition = "Second", publisher = "Wiley" } @article{fisher:1935, author= "Fisher, R. A.", year = 1935, title = "The logic of inductive inference", journal = JSSR, series = "A", edition = 98, pages = "39--54" } @article{fisher:1962, author = "Fisher, R. A.", year = 1962, title= "Confidence limits for a cross-product ratio", journal = "Australian Journal of Statistics", edition = 4, pages = 41 } @book{fisher:1970, author = "Fisher, R. A.", year = 1970, title = "Statistical Methods for Research Workers", publisher = "Oliver & Boyd" } @article{mehta+patel:1986, author = "Mehta, C. R. and Patel, N. R.", year = 1986, title = "Algorithm 643. FEXACT: A Fortran subroutine for Fisher's exact test on unordered {r*c} contingency tables", journal = "ACM Transactions on Mathematical Software", edition = 12, pages = "154--161" } @article{clarckson+fan+joe:1993, author = "Clarkson, D. B and Fan, Y. and Joe, H.", year = 1993, title = "A Remark on Algorithm 643: FEXACT: An Algorithm for Performing Fisher's Exact Test in {r x c} Contingency Tables", journal = "ACM Transactions on Mathematical Software", edition = 19, pages = "484--488" } @article{conover+johnson+johnson:1981, author = "William J. Conover and Mark E. Johnson and Myrle M. Johnson", year = 1981, title = "A comparative study of tests for homogeneity of variances, with applications to the outer continental shelf bidding data", journal = "Technometrics", edition = 23, pages = "351--361" } @article{shea:1988, author = "Shea, B. L.", year = 1988, title = "Algorithm AS 239, Chi-squared and incomplete Gamma integral", journal = "Applied Statistics (JRSS C)", edition = 37, pages = "466--473" } @inbook{davison+snell:1991, author = "Davison, A. C. and Snell, E. J.", year = 1991, chapter = "Residuals and diagnostics.", title = "Statistical Theory and Modelling. In Honour of Sir David Cox, FRS", editor = "Hinkley, D. V. and Reid, N. and Snell, E. J.", publisher = "Chapman & Hall" } @book{everitt:1974, author = "Everitt, B.", year = 1974, title = "Cluster Analysis", address = "London", publisher = "Heinemann Educ. Books." } @book{hartigan:1975, author = "Hartigan, J. A.", year = 1975, title = "Clustering Algorithms", address = "New York", publisher = "Wiley" } @book{sneath+sokal:1973, author = "Sneath, P. H. A. and R. R. Sokal", year = 1973, title = "Numerical Taxonomy", address = "San Francisco", publisher = "Freeman" } @book{anderberg:1973, author = "Anderberg, M. R.", year = 1973, title = "Cluster Analysis for Applications", publisher = "Academic Press", address = "New York" } @book{gordon:1999, author = "Gordon, A. D.", year = 1999, title = "Classification", edition = "Second Edition", address = "London", publisher = "Chapman and Hall / CRC" } @inproceedings{murtagh:1985, author = "Murtagh, F.", year = 1985, title = "Multidimensional Clustering Algorithms", booktitle = "COMPSTAT Lectures 4", address = "Wuerzburg", publisher = "Physica-Verlag" } @article{mcquitty:1966, author = "McQuitty, L.L.", year = 1966, title = "Similarity Analysis by Reciprocal Pairs for Discrete and Continuous Data", journal = "Educational and Psychological Measurement", edition = 26, pages = "825--831" } @techreport{holt:1957, author = "C. C. Holt", year = 1957, title = "Forecasting seasonals and trends by exponentially weighted moving averages", note = "ONR Research Memorandum", institution = "Carnigie Institute", edition = 52 } @article{winters:1960, author = "P. R. Winters", year = 1960, title = "Forecasting sales by exponentially weighted moving averages", journal = "Management Science", edition = 6, pages = "324--342" } @book{johnson+kotz+kemp:1992, author = "Johnson, N. L. and Kotz, S. and Kemp, A. W.", year = 1992, title = "Univariate Discrete Distributions", edition = "Second Edition", address = "New York", publisher = "Wiley" } @book{belsley+kuh+welsch:1980, author = "Belsley, D. A. and Kuh, E. and Welsch, R. E.", year = 1980, title = "Regression Diagnostics", address = "New York", publisher = "Wiley" } @book{cook+weisberg:1982, author = "Cook, R. D. and Weisberg, S.", year = 1982, title = "Residuals and Influence in Regression", address = "London", publisher = "Chapman and Hall" } @article{williams:1987, author = "Williams, D. A.", year = 1987, title = "Generalized linear model diagnostics using the deviance and single case deletions", journal = "Applied Statistics", edition = 36, pages = "181--191" } @book{fox:1997, author = "Fox, J.", year = 1997, title = "Applied Regression, Linear Models, and Related Methods", publisher = "Sage" } @book{fox:2002, author = "Fox, J.", year = 2002, title = "An R and S-Plus Companion to Applied Regression", publisher = "Sage Publ.", url = "http://www.socsci.mcmaster.ca/jfox/Books/Companion/" } @book{piessens+dedoncker-kapenga+uberhuber+kahaner:1983, author = "Piessens, R. and deDoncker-Kapenga, E. and Uberhuber, C. and Kahaner, D.", year = 1983, title = "Quadpack: a Subroutine Package for Automatic Integration", publisher = "Springer Verlag" } @book{tukey:1977, author = "Tukey, J. W.", year = 1977, title = "Exploratory Data Analysis", address = "Reading", publisher = "Addison-Wesley" } @book{barlow+bartholomew+bremner+brunk:1972, author = "Barlow, R. E. and Bartholomew, D. J. and Bremner, J. M. and Brunk, H. D.", year = 1972, title = "Statistical inference under order restrictions", publisher = "Wiley", address = "London" } @book{robertson+wright+dykstra:1988, author = "Robertson, T. and Wright,F. T. and Dykstra, R. L.", year = 1988, title = "Order Restricted Statistical Inference", publisher = "Wiley", address = "New York" } @book{bloomfield:1976, author = "Bloomfield, P.", year = 1976, title = "Fourier Analysis of Time Series: An Introduction", publisher = "Wiley" } @book{brockwell+davis:1991, author = "Brockwell, P.J. and Davis, R.A.", year = 1991, title = "Time Series: Theory and Methods", edition = "Second edition", publisher = "Springer" } @article{forgy:1965, author = "Forgy, E. W.", year = 1965, title = "Cluster analysis of multivariate data: efficiency vs interpretability of classifications", journal = "Biometrics", edition = 21, publisher = "768--769" } @article{hartigan+wong:1979, author = "Hartigan, J. A. and Wong, M. A.", year = 1979, title = "A K-means clustering algorithm", journal = "Applied Statistics", edition = 28, pages = "100--108" } @techreport{lloyd:1957, author = "Lloyd, S. P.", title = "Least squares quantization in PCM", year = 1957, institution = "Bell Laboratories" } @article{lloyd:1982, author = "Lloyd, S. P.", title = "Least squares quantization in PCM", year = 1982, journal = "IEEE Transactions on Information Theory", edition = 28, pages = "128--137" } @inproceedings{macqueen:1967, author = "MacQueen, J.", year = 1967, title = "Some methods for classification and analysis of multivariate observations", booktitle = "Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability", editor = "L. M. Le Cam & J. Neyman", edition = "1", pages = "281--297", address = "Berkeley, CA", organization = "University of California Press" } @article{birnbaum+tingey:1951, author = "Birnbaum, Z. W. and Tingey, Fred H.", year = 1951, title = "One-sided confidence contours for probability distribution functions", journal = "The Annals of Mathematical Statistics", edition = "22", volume = 4, pages = "592--596" } @book{durbin:1973, author = "Durbin, J.", year = 1973, title = "Distribution theory for tests based on the sample distribution function", publisher = "SIAM" } @article{marsaglia+tsang+wang:2003, author = "Marsaglia, George and Tsang, Wai Wan and Wang, Jingbo", year = 2003, title = "Evaluating Kolmogorov's distribution", journal = JSS, edition = 8, number = 18, url = "http://www.jstatsoft.org/v08/i18/" } @article{wilkinson+rogers:1973, author = "Wilkinson, G. N. and Rogers, C. E.", year = 1973, title = "Symbolic descriptions of factorial models for analysis of variance", journal = "Applied Statistics", edition = 22, pages = "392--9" } @article{harville:1974, author = "Harville, D.A.", year = 1974, title = "Bayesian inference for variance components using only error contrasts", journal = "Biometrika", edition = 61, pages = "383--385" } @article{haberman:1972, author = "Haberman, S. J.", year = 1972, title = "Log-linear fit for contingency tables---Algorithm AS51", journal = "Applied Statistics", edition = 21, pages = "218--225" } @article{cleveland:1979, author = "Cleveland, W. S.", year = 1979, title = "Robust locally weighted regression and smoothing scatterplots", journal = JASA, edition = 74, pages = "829--836" } @article{cleveland:1981, author = "Cleveland, W. S.", year = 1981, title = "LOWESS: A program for smoothing scatterplots by robust locally weighted regression", journal = "The American Statistician", edition = 35, pages = "54" } @book{krzanowski:1988, author = "Krzanowski, W. J.", year = 1988, title = "Principles of Multivariate Analysis. A User's Perspective.", publisher = "Oxford University Press" } @book{krzanowski+marriott:1994, author = "Krzanowski, W. J. and Marriott, F. H. C.", year = 1994, title = "Multivariate Analysis. Part I: Distributions, Ordination and Inference", publisher = "Edward Arnold" } @book{anderson:1958, author = "Anderson, T. W.", year = 1958, title = "An Introduction to Multivariate Statistical Analysis", publisher = "Wiley" } @book{anderson:1994, author = "Anderson, T. W.", year = 1994, title = "An Introduction to Multivariate Statistical Analysis", publisher = "Wiley" } @article{mielke:1967, author = "Mielke, Jr., Paul W.", year = 1967, title = "Note on some squared rank tests with existing ties", journal = "Technometrics", edition = 9, number = 2, pages = "312--314" } @book{dennis+schnabel:1983, author = "Dennis, J. E. and Schnabel, R. B.", year = 1983, title = "Numerical Methods for Unconstrained Optimization and Nonlinear Equations", publisher = "Prentice-Hall", address = "Englewood Cliffs, NJ" } @article{schnabel+koontz+weiss:1985, author = "Schnabel, R. B. and Koontz, J. E. and Weiss, B. E.", year = 1985, title = "A modular system of algorithms for unconstrained minimization", journal = "ACM Trans. Math. Software", edition = 11, pages= "419--440" } @book{bates+watts:1988, author = "Bates, D. M. and Watts, D. G.", year = 1988, title = "Nonlinear Regression Analysis and Its Applications", publisher = "Wiley" } @article{welch:1951, author = "Welch, B. L.", year = 1951, title = "On the comparison of several mean values: an alternative approach", journal = Biometrika, edition = 38, pages = "330--336" } @book{brent:1973, author = "Brent, R.", year = 1973, title = "Algorithms for Minimization without Derivatives", address = "Englewood Cliffs N.J.", publisher = "Prentice-Hall" } @article{belisle:1992, author = "Belisle, C. J. P.", year = 1992, title = "Convergence theorems for a class of simulated annealing algorithms on \eqn{R^d}{Rd}", journal = "Journal of Applied Probability", edition = 29, pages = "885--895" } @article{byrd+nocedal+zhu:1995, author = "Byrd, R. H. and Lu, P. and Nocedal, J. and Zhu, C.", year = 1995, title = "A limited memory algorithm for bound constrained optimization", journal = "SIAM J. Scientific Computing", edition = 16, pages = "1190--1208" } @article{fletcher+reeves:1964, author = "Fletcher, R. and Reeves, C. M.", year = 1964, title = "Function minimization by conjugate gradients", journal = "Computer Journal", edition = 7, pages = "148--154" } @book{nash:1990, author = "Nash, J. C.", year = 1990, title = "Compact Numerical Methods for Computers. Linear Algebra and Function Minimisation.", publisher = "Adam Hilger" } @article{nelder+mead:1965, author = "Nelder, J. A. and Mead, R.", year = 1965, title = "A simplex algorithm for function minimization", journal = "Computer Journal", edition = 7, pages = "308--313" } @book{nocedal+wright:1999, author = "Nocedal, J. and Wright, S. J.", year = 1999, title = "Numerical Optimization", publisher = "Springer" } @article{benjamini+hochberg:1995, author = "Benjamini, Y. and Hochberg, Y.", year = 1995, title = "Controlling the false discovery rate: a practical and powerful approach to multiple testing", journal = JSSR, series = "B", edition = 57, pages = "289--300" } @article{benjamini+yekutieli:2001, author = "Benjamini, Y. and Yekutieli, D.", year = 2001, title = "The control of the false discovery rate in multiple testing under dependency", journal= "Annals of Statistics", edition = 29, pages = "1165--1188" } @article{holm:1979, author = "Holm, S.", year = 1979, title = "A simple sequentially rejective multiple test procedure", journal = "Scandinavian Journal of Statistics", edition = 6, pages = "65--70" } @article{hommel:1988, author = "Hommel, G.", year = 1988, title = "A stagewise rejective multiple test procedure based on a modified Bonferroni test", journal = "Biometrika", edition = 75, pages = "383--386" } @article{hochberg:1988, author = "Hochberg, Y.", year = 1988, title = "A sharper Bonferroni procedure for multiple tests of significance", journal = "Biometrika", edition = 75, pages = "800--803" } @article{schaffer:1995, author = "Shaffer, J. P.", year = 1995, title = "Multiple hypothesis testing", journal = "Annual Review of Psychology", edition = 46, pages = "561--576" } @article{sarkar:1998, author = "Sarkar, S.", year = 1998, title = "Some probability inequalities for ordered MTP2 random variables: a proof of Simes conjecture", journal = "Annals of Statistics", edition = 26, pages = "494--504" } @article{sarkar+chang:1997, author = "Sarkar, S. and Chang, C. K.", year = 1997, title = "Simes' method for multiple hypothesis testing with positively dependent test statistics", journal = JASA, edition = 92, pages = "1601--1608" } @article{wright:1992, author = "Wright, S. P.", year = 1992, title = "Adjusted P-values for simultaneous inference", journal = "Biometrics", edition = 48, pages = "1005--1013" } @techreport{holt:1957, author = "Holt, C. C.", year = 1957, title = "Forecasting seasonals and trends by exponentially weighted moving averages", note = "ONR Research Memorandum", institution = "Carnigie Institute 52" } @book{cook+weisberg:1982, author = "Cook, R. D. and Weisberg, S.", year = 1982, title = "Residuals and Influence in Regression", address = "London", publisher = "Chapman and Hall" } @inbook{firth:1991, author = "Firth, D.", year = 1991, chapter = "Generalized Linear Models", editor = "Hinkley, D. V. and Reid, N. and Snell, E. J.", title = "Statistical Theory and Modelling. In Honour of Sir David Cox, FRS.", address = "London", publisher = "Chapman and Hall", pages = "55-82" } @article{hinkley:1975, author = "Hinkley, D. V.", year = 1975, title = "On power transformations to symmetry", journal = "Biometrika", edition = 62, pages = "101--111" } @book{kennedy+gentle:1980, author = "Kennedy, Jr., W. J. and Gentle, J. E.", year = 1980, title = "Statistical Computing", publisher = "Marcel Dekker" } @book{blom:1958, author = "Blom, G.", year = 1958, title = "Statistical Estimates and Transformed Beta Variables", publisher = "Wiley" } @article{friedman+stuetzle:1981, author = "Friedman, J. H. and Stuetzle, W.", year = 1981, title = "Projection pursuit regression", journal = JASA, edition = 76, pages = "817--823" } @techreport{friedman:1984, author = "Friedman, J. H.", year = 1984, title = "SMART User's Guide", institution = "Laboratory for Computational Statistics, Stanford University", note = "Technical Report No. 1" } @techreport{friedman:1984, author = "Friedman, J. H.", year = 1984, title = "A variable span scatterplot smoother", institution = "Laboratory for Computational Statistics, Stanford University", note = "Technical Report No. 5" } @book{banerjee+dolado+galbraith+hendry:1993, author = "Banerjee, A. and Dolado, J. J. and Galbraith, J. W. and Hendry, D. F.", year = 1993, title = "Cointegration, Error Correction, and the Econometric Analysis of Non-Stationary Data", publisher = "Oxford University Press", address = "Oxford" } @article{perron:1988, author = "Perron, P.", year = 1988, title = "Trends and random walks in macroeconomic time series", journal = "Journal of Economic Dynamics and Control", edition = 12, pages = "297--332" } @article{wilson:1927, author = "Wilson, E. B.", year = 1927, title = "Probable inference, the law of succession, and statistical inference", journal = JASA, edition = 22, pages = "209--212" } @article{newcombe:1988a, author = "Newcombe, R. G.", year = 1998, title = "Two-Sided Confidence Intervals for the Single Proportion: Comparison of Seven Methods", journal = "Statistics in Medicine", edition = 17, pages = "857--872" } @article{newcombe:1988b, author = "Newcombe, R. G.", year = 1998, title = "Interval Estimation for the Difference Between Independent Proportions: Comparison of Eleven Methods", journal = "Statistics in Medicine", edition = 17, pages = "873--890" } @article{quade:1979, author = "Quade, D.", year = 1979, title = "Using weighted rankings in the analysis of complete blocks with additive block effects", journal = JASA, edition = 74, pages = "680--683" } @article{hyndman+fan:1996, author = "Hyndman, R. J. and Fan, Y.", year = 1996, title = "Sample quantiles in statistical packages", journal= "American Statistician", edition = 50, pages = "361--365" } @article{haerdle:1995, author = "H{\"a}rdle, W. and Steiger, W.", year = 1995, title = "[Algorithm AS 296] Optimal median smoothing", journal = "Applied Statistics", edition = 44, pages = "258--264" } @techreport{friedman+stuetzle:1982, author = "Friedman, Jerome H. and Stuetzle, Werner", year = 1982, title = "Smoothing of Scatterplots", institution = "Dep. Statistics, Stanford U.", note = "Report, Project Orion 003" } @misc{maechler:2003, author = "Maechler, Martin", year = 2003, title = "Fast Running Medians: Finite Sample and Asymptotic Optimality", note = "working paper available from the author" } @article{royston:1982a, author = "Royston, Patrick", year = 1982, title = "An extension of Shapiro and Wilk's \eqn{W} test for normality to large samples", journal = "Applied Statistics", edition = 31, pages = "115--124" } @article{royston:1982b, author = "Royston, Patrick", year= 1982, title = "Algorithm AS 181: The \eqn{W} test for Normality", journal = "Applied Statistics", edition = 31, pages = "176--180" } @article{royston:1995, author = "Royston, Patrick", year = 1995, title = "Remark AS R94: A remark on Algorithm AS 181: The \eqn{W} test for normality", journal = "Applied Statistics", edition = 44, pages = "547--551" } @book{velleman+hoaglin:1981, author = "Velleman, P. F. and Hoaglin, D. C.", year = 1981, title = "ABC of EDA (Applications, Basics, and Computing of Exploratory Data Analysis)", publisher = "Duxbury" } @book{green+silverman:1994, author = "Green, P. J. and Silverman, B. W.", year = 1994, title = "Nonparametric Regression and Generalized Linear Models: A Roughness Penalty Approach", publisher = "Chapman and Hall" } @book{hastie+tibshirani:1990, author = "Hastie, T. J. and Tibshirani, R. J.", year = 1990, title = "Generalized Additive Models", publisher = "Chapman and Hall" } @article{thompson:1990, author = "Thompson, D.J.", year = 1990, title = "Time series analysis of Holocene climate data", journal = "Phil. Trans. Roy. Soc. A", edition = 330, pages = "601--616" } @book{bloomfield:1976, author = "Bloomfield, P.", year = 1976, title = "Fourier Analysis of Time Series: An Introduction", publisher = "Wiley" } @book{forsythe+malcolm+moler:1977, author = "Forsythe, G. E. and Malcolm, M. A. and Moler, C. B.", year= 1977, title = "Computer Methods for Mathematical Computations", publisher = "Prentice Hall" } @article{fritsch+carlson:1980, author = "Fritsch, F. N. and Carlson, R. E.", year = 1980, title = "Monotone piecewise cubic interpolation", journal = "SIAM Journal on Numerical Analysis", edition = 17, pages = "238--246" } @book{ratkowsky:1983, author = "Ratkowsky, David A.", year = 1983, title = "Nonlinear Regression Modeling", publisher = "Dekker" } @article{cleveland+cleveland+mcrae+terpenning:1990, author = "Cleveland, R. B. and Cleveland, W. S. and McRae, J.E. and Terpenning, I.", year = 1990, title = "STL: A Seasonal-Trend Decomposition Procedure Based on Loess", journal = "Journal of Official Statistics", edition = 6, pages = "3--73" } @book{harvey:1989, author = "Harvey, A. C.", year = 1989, title = "Forecasting, Structural Time Series Models and the Kalman Filter", publisher = "Cambridge University Press" } @book{miller:1981, author = "Miller, R. G.", year = 1981, title = "Simultaneous Statistical Inference", publisher = "Springer" } @book{yandell:1997, author = "Yandell, B. S.", year = 1997, title = "Practical Data Analysis for Designed Experiments", publisher = "Chapman & Hall" } @article{copenhaver+holland:1988, author = "Copenhaver, Margaret Diponzio and Holland, Burt S.", year = 1988, title = "Multiple comparisons of simple effects in the two-way analysis of variance with fixed effects", journal = "Journal of Statistical Computation and Simulation", edition = 30, pages = "1--15" } @article{hendrickson+white:1964, author = "Hendrickson, A. E. and White, P. O.", year = 1964, title = "Promax: a quick method for rotation to orthogonal oblique structure", journal = "British Journal of Statistical Psychology", edition = 17, pages = "65--70" } @book{horst:1965, author = "Horst, P.", year = 1965, title = "Factor Analysis of Data Matrices", publisher = "Holt, Rinehart and Winston" } @article{kaiser:1958, author = "Kaiser, H. F.", year = 1958, title = "The varimax criterion for analytic rotation in factor analysis", journal = "Psychometrika", edition = 23, pages = "187--200" } bibtex/inst/bib/issue18.bib0000644000176200001440000000065714313223106015222 0ustar liggesusers@Article{10.1371/journal.pone.0109458, author = {Liu, Yang-Yu AND Nacher, Jose C. AND Ochiai, Tomoshiro AND Martino, Mauro AND Altshuler, Yaniv}, journal = {PLOS ONE}, publisher = {Public Library of Science}, title = {Prospect Theory for Online Financial Trading}, year = {2014}, month = {10}, volume = {9}, url = {https://doi.org/10.1371/journal.pone.0109458}, pages = {1-7}, number = {10}, doi = {10.1371/journal.pone.0109458} } bibtex/inst/bib/xampl_multiline.bib0000644000176200001440000000060314313223106017113 0ustar liggesusers @ARTICLE{article-full, author = {L[eslie] A. Aamport}, title = {The Gnats and Gnus Document Preparation System. Multiline entry}, journal = {\mbox{G-Animal's} Journal}, year = 1986, volume = 41, number = 7, pages = "73+", month = jul, note = "This is a full ARTICLE entry", abstract = "This is a multiline with a concat string" } bibtex/inst/bib/issue17.bib0000644000176200001440000000030314313223106015205 0ustar liggesusers@Article{newspaper, author = {{Herm{\`e}s International S.A.} and Katzfu{\ss}, Matthias}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name} } bibtex/inst/bib/issue6.bib0000644000176200001440000000023414313223106015126 0ustar liggesusers@Article{newspaper, author = {Van Damme, Jean-Claude}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, year = {2016}, } bibtex/inst/bib/multiline_string.bib0000644000176200001440000000154414313223106017305 0ustar liggesusers@String{inst-CS-U-MARYLAND = "Department of Computer Science, University of Maryland"} @TechReport{Golub:1976:RDLb, author = "G. H. Golub and Virginia Klema and G. W. {Stewart III}", title = "Rank Degeneracy and Least Squares Problems", type = "Report", number = "TR-751", institution = inst-CS-U-MARYLAND, pages = "????", month = "????", year = "1976", bibdate = "Thu May 29 16:12:45 2014", bibsource = "http://www.math.utah.edu/pub/bibnet/authors/g/golub-gene-h.bib; http://www.math.utah.edu/pub/bibnet/authors/s/stewart-gilbert-w.bib", acknowledgement = ack-nhfb, GWSnumber = "N6", xxnote = "Check: is this the same as Golub:1976:RDLa? If so, which report number is correct??", } bibtex/inst/bib/unable_recover_42.bib0000644000176200001440000000031314313223106017206 0ustar liggesusers@String{{BAZ = "Foo Bar Baz" } @misc{murdoch:2009, author = "Duncan Murdoch", title = "Parsing Rd files", year = 2009, institution = BAZ, url = "http://developer.r-project.org/parseRd.pdf" } bibtex/inst/bib/issue7.bib0000644000176200001440000000023514313223106015130 0ustar liggesusers@Article{newspaper, author = {Jean-Claude {Van Damme}}, title = {Article title}, date = {2016-12-21}, journal = {Newspaper name}, year = {2016}, } bibtex/inst/bib/badFormat.bib0000644000176200001440000000124414313223106015611 0ustar liggesusersencoding = "utf-8" @String{ BSSA = "Bull. Seism. Soc. Am." } @String{ JRSS = "Journal of the Royal Statistical Society" } @book{brown:1963, author = "Brown, R. G.", year = 1963, publisher = "Prentice-Hall" } @article{smith+stanley:1983, author = "Smith, G. A. and Stanley G.", year = "1983", title = "Clocking g: relating intelligence and measures of timed performance", journal= "Intelligence", edition = 7, pages = "353--368" } @book{chambers+cleveland+kleiner+tukey:1983, author = "Chambers, J. M., Cleveland, W. S., Kleiner, B., Tukey, P. A.", year = 1983, title = "Graphical Methods for Data Analysis", address = "Belmont, CA", publisher = "Wadsworth" }bibtex/inst/bib/issue23.bib0000644000176200001440000000054314313223106015210 0ustar liggesusers@article{Hawking1966, author = {Hawking, Stephen William and Bondi, Hermann }, title = {The occurrence of singularities in cosmology}, journal = {Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences}, volume = {294}, number = {1439}, pages = {511-521}, year = {1966}, doi = {10.1098/rspa.1966.0221}, } bibtex/inst/bib/stats4.bib0000644000176200001440000000027414313223106015136 0ustar liggesusers @article{schwarz:1978, author = "Schwarz, G.", year = 1978, title = "Estimating the Dimension of a Model", journal = "Annals of Statistics", edition = 6, pages = "461--464" }