debian/0000755000000000000000000000000012146232122007161 5ustar debian/README.test0000644000000000000000000000044311652516731011034 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(DiagnosisMed)’ in order to confirm its integrity. debian/source/0000755000000000000000000000000012145433076010473 5ustar debian/source/format0000644000000000000000000000001411523304662011676 0ustar 3.0 (quilt) debian/copyright0000644000000000000000000000231312145433063011121 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: DiagnosisMed Upstream-Contact: Pedro Brasil Source: http://cran.r-project.org/src/contrib/Archive/DiagnosisMed/ Files: * Copyright: 2009 Pedro Brasil License: GPL-2+ Files: debian/* Copyright: 2008 Andreas Tille 2009 Charles Plessy License: GPL-2+ License: GPL-2+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the complete text of the GNU Public License version 2 can be found in `/usr/share/common-licenses/GPL-2'. debian/rules0000755000000000000000000000032312145433207010245 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules file for the Debian/GNU Linux r-cran-diagnosismed package # Copyright 2008 by Andreas Tille include /usr/share/R/debian/r-cran.mk debian/patches/0000755000000000000000000000000012146231341010612 5ustar debian/patches/namespace.patch0000644000000000000000000000051012146231341013563 0ustar Description: Add NAMESPACE R 3.0.0 requires a NAMESPACE file in the top-level, this upstream package currently does not have one. The simple default export is fine. Reviewed-By: Dirk Eddelbuettel Last-Update: <2013-04-14> --- /dev/null +++ r-cran-rocr/NAMESPACE @@ -0,0 +1 @@ +exportPattern("^[[:alpha:]]+") debian/patches/series0000644000000000000000000000002012146231273012023 0ustar namespace.patch debian/watch0000644000000000000000000000014612145432220010213 0ustar version=3 http://cran.r-project.org/src/contrib/Archive/DiagnosisMed/DiagnosisMed_([-\d.]+)\.tar\.gz debian/changelog0000644000000000000000000000313012146232122011030 0ustar r-cran-diagnosismed (0.2.3-3) unstable; urgency=low * debian/watch: DiagnosisMed was removed from CRAN and is only available in the archive * debian/control: - Standards-Version: 3.9.4 (no changes needed) - DM-Upload-Allowed removed - debhelper 9 (also debian/compat) - normalised formating * debian/copyright: DEP5 * debian/rules: Remove unneeded code to obtain R:Depends variable * debian/patches/namespace.patch: Take over the patch written by Dirk Eddelbuettel for r-cran-rocr because DiagnosisMed comes without this file that is required since R 3.0.0 -- Andreas Tille Fri, 17 May 2013 15:46:08 +0200 r-cran-diagnosismed (0.2.3-2) unstable; urgency=low * Improve long description Closes: #635540 * Standards-Version: 3.9.2 (no changes needed) * Fixed Vcs fields * debian/rules: Added missing '~' * Source format 3.0 (quilt) * Added README.test * Debhelper 8 (control+compat) -- Andreas Tille Fri, 28 Oct 2011 13:56:36 +0200 r-cran-diagnosismed (0.2.3-1) unstable; urgency=low * New upstream version * Incremented Standards-Version to reflect conformance with Policy 3.8.4 (debian/control, no changes needed). * Depend on a version equal or superior than the R version used to build the package, by adding a R:Depends substvar (debian/control, debian/rules). -- Andreas Tille Tue, 16 Mar 2010 10:18:44 +0100 r-cran-diagnosismed (0.2.2.2-1) unstable; urgency=low * Initial release (closes: #557202). -- Andreas Tille Thu, 19 Nov 2009 15:38:39 +0100 debian/compat0000644000000000000000000000000212145432422010363 0ustar 9 debian/control0000644000000000000000000000310312145432671010573 0ustar Source: r-cran-diagnosismed Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev Build-Depends-Indep: r-cran-epicalc, r-cran-epitools, r-cran-teachingdemos, r-cran-amore Standards-Version: 3.9.4 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-diagnosismed/trunk Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-diagnosismed/trunk/ Homepage: http://cran.r-project.org/web/packages/DiagnosisMed Package: r-cran-diagnosismed Architecture: all Depends: ${shlibs:Depends}, ${misc:Depends}, ${R:Depends}, r-cran-epicalc, r-cran-epitools, r-cran-teachingdemos, r-cran-amore Suggests: r-cran-surveillance, r-cran-epi, r-cran-epibasix, r-cran-epir Description: medical diagnostic test accuracy analysis toolkit DiagnosisMed is a GNU R package to analyze the accuracy of data from diagnostic tests evaluating health conditions. It was designed to be used by health professionals. This package helps estimating sensitivity and specificity from categorical and continuous test results including some evaluations of indeterminate results, or compare different categorical tests, and estimate reasonable cut-offs of tests and display it in a way commonly used by health professionals. No graphical interface is available yet.