debian/0000755000000000000000000000000012231441612007162 5ustar debian/control0000644000000000000000000000225512231422275010575 0ustar Source: r-cran-dosefinding Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-cran-lattice, r-cran-mvtnorm Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-dosefinding/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-dosefinding/trunk/ Homepage: http://cran.r-project.org/web/packages/DoseFinding Package: r-cran-dosefinding Architecture: any Depends: ${shlibs:Depends}, ${R:Depends}, r-cran-lattice, r-cran-mvtnorm Description: Planning and Analyzing Dose Finding experiments The DoseFinding GNU R package provides functions for the design and analysis of dose-finding experiments (with focus on pharmaceutical Phase II clinical trials). It provides functions for: multiple contrast tests, fitting non-linear dose-response models (using Bayesian and non-Bayesian estimation), calculating optimal designs and an implementation of the MCPMod methodology. debian/README.source0000644000000000000000000000264212231435007011346 0ustar Explanation for binary files inside source package according to http://lists.debian.org/debian-devel/2013/09/msg00332.html The source packages contains some binary RData files which are documented inside the according manpages Files: data/IBScovars.rda Documentation: man/IBScovars.Rd Irritable Bowel Syndrome Dose Response data with covariates Published in: Biesheuvel, E. and Hothorn, L. A. (2002). Many-to-one comparisons in stratified designs, Biometrical Journal, 44, 101--116 Files: data/biom.rda Documentation: man/biom.Rd Biometrics Dose Response data Published in: Bretz, F., Pinheiro, J. C., and Branson, M. (2005), Combining multiple comparisons and modeling techniques in dose-response studies, Biometrics, 61, 738--748 Files: data/glycobrom.rda Documentation: man/glycobrom.Rd Glycopyrronium Bromide dose-response data Published in: http://clinicaltrials.gov/ct2/show/results/NCT00501852 Files: data/migraine.rda Documentation: man/migraine.Rd Migraine Dose Response data Published in: http://clinicaltrials.gov/ct2/show/results/NCT00712725 Files: data/neurodeg.rda Documentation: man/neurodeg.Rd Neurodegenerative disease simulated longitudinal dose-finding data set Published in: Pinheiro, J. C., Bornkamp, B., Glimm, E. and Bretz, F. (2013). Multiple comparisons and modelling for dose-finding using general parametric models -- Andreas Tille Tue, 22 Oct 2013 09:03:24 +0200 debian/rules0000755000000000000000000000007212231421420010234 0ustar #!/usr/bin/make -f include /usr/share/R/debian/r-cran.mk debian/watch0000644000000000000000000000011712231421467010220 0ustar version=3 http://cran.r-project.org/src/contrib/DoseFinding_([-\d.]*)\.tar\.gz debian/upstream0000644000000000000000000000062612231424314010751 0ustar Reference: Author: Jose C. Pinheiro and Björn Bornkamp and Frank Bretz Title: Design and Analysis of Dose-Finding Studies Combining Multiple Comparisons and Modeling Procedures Journal: Journal of Biopharmaceutical Statistics Year: 2006 Volume: 16 Number: 5 Pages: 639-656 DOI: 10.1080/10543400600860428 PMID: 17037263 URL: http://www.tandfonline.com/doi/abs/10.1080/10543400600860428 debian/copyright0000644000000000000000000000220312231421751011114 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: DoseFinding Upstream-Contact: Bjoern Bornkamp Source: http://cran.r-project.org/src/contrib/ Files: * Copyright: 2010-2013 Bjoern Bornkamp , Jose Pinheiro, Frank Bretz License: GPL3+ Files: debian/* Copyright: 2013 Andreas Tille License: GPL3+ License: GPL3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the complete text of the GNU Public License can be found in `/usr/share/common-licenses/GPL-3'. debian/source/0000755000000000000000000000000012214301143010455 5ustar debian/source/format0000644000000000000000000000001412214301143011663 0ustar 3.0 (quilt) debian/README.test0000644000000000000000000000044212231420601011013 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(DoseFinding)’ in order to confirm its integrity. debian/changelog0000644000000000000000000000024112231441612011031 0ustar r-cran-dosefinding (0.9-9-1) unstable; urgency=low * Initial release (closes: #727090) -- Andreas Tille Tue, 22 Oct 2013 09:03:24 +0200 debian/compat0000644000000000000000000000000212214301143010353 0ustar 9 debian/docs0000644000000000000000000000002312214301143010023 0ustar debian/README.test