debian/0000755000000000000000000000000012144656126007175 5ustar debian/control0000644000000000000000000000312112144656026010574 0ustar Source: r-cran-epi Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev Standards-Version: 3.9.4 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-epi/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-epi/trunk/ Homepage: http://staff.pubhealth.ku.dk/~bxc/Epi/ Package: r-cran-epi Architecture: any Depends: ${shlibs:Depends}, ${R:Depends} Description: GNU R epidemiological analysis Functions for demographic and epidemiological analysis in the Lexis diagram, i.e. register and cohort follow-up data, including interval censored data and representation of multistate data. Also some useful functions for tabulation and plotting. Contains some epidemiological datasets. . The Epi package is mainly focused on "classical" chronic disease epidemiology. The package has grown out of the course Statistical Practice in Epidemiology using R (see http://www.pubhealth.ku.dk/~bxc/SPE). . There is A short introduction to R for Epidemiology available at http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf Beware that the pages 38-120 of this is merely the manual pages for the Epi package. . Epi is not the only R-package for epidemiological analysis, a package with more affinity to infectious disease epidemiology is the epitools package which is also evailable in Debian. . Epi is used in the Department of Biostatistics of the University of Copenhagen. debian/links0000644000000000000000000000007111247717502010235 0ustar usr/share/doc/r-cran-epi usr/lib/R/site-library/Epi/doc debian/rules0000755000000000000000000000127211734066414010256 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules file for the Debian/GNU Linux r-cran-epi package # Copyright 2008 by Andreas Tille include /usr/share/R/debian/r-cran.mk DEB_COMPRESS_EXCLUDE_ALL := .pdf install/$(package):: mv debian/$(package)/usr/lib/R/site-library/Epi/doc/* debian/$(package)/usr/share/doc/$(package) rmdir debian/$(package)/usr/lib/R/site-library/Epi/doc # install examples and unset executable flag (which is the reason why no debian/examples # is used which is executed past install/$(package) target cp -a Examples/* debian/$(package)/usr/share/doc/$(package)/examples chmod 644 debian/$(package)/usr/share/doc/$(package)/examples/*.R debian/watch0000644000000000000000000000010711247717502010223 0ustar version=3 http://cran.r-project.org/src/contrib/Epi_([-\d.]*)\.tar\.gz debian/upstream0000644000000000000000000000042511752430536010760 0ustar Reference: Title: "Lexis: An R Class for Epidemiological Studies with Long-Term Follow-Up" Author: Martyn Plummer and Bendix Carstensen Journal: Journal of Statistical Software Year: 2011 Volume: 38 Number: 5 Pages: 1--12 URL: http://www.jstatsoft.org/v38/i05/ debian/copyright0000644000000000000000000000221711734067046011133 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: Epi Upstream-Contact: Bendix Carstensen Source: http://cran.r-project.org/src/contrib/ Files: * Copyright: 2008-2012 Bendix Carstensen, Martyn Plummer, Esa Laara, Michael Hills et. al. License: GPL2+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the complete text of the GNU Public License can be found in `/usr/share/common-licenses/GPL'. Files: debian/* Copyright: 2008-2012 Andreas Tille License: GPL2+ Same as r-cran-epitools itelf debian/source/0000755000000000000000000000000012144654606010476 5ustar debian/source/format0000644000000000000000000000001411301174376011677 0ustar 3.0 (quilt) debian/README.test0000644000000000000000000000043211402157636011030 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(Epi)’ in order to confirm its integrity. debian/changelog0000644000000000000000000000574112144656126011056 0ustar r-cran-epi (1.1.49-1) unstable; urgency=low * New upstream version * debian/upstream: separate authors by ' and ' * debian/control: - Standards-Version: 3.9.4 (no changes needed) - DM-Upload-Allowed removed - debhelper 9 (also debian/compat) - normalised using `cme fix dpkg-control` - drop versioned Build-Depends from r-base-dev because the version in latest stable is sufficient -- Andreas Tille Wed, 15 May 2013 11:48:13 +0200 r-cran-epi (1.1.33-1) unstable; urgency=low * New upstream version * debian/upstream: Add References * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) * debian/rules: - Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk * debian/README.Debian is rather README.test * debian/docs: Install README.test * debian/copyright: Enhances DEP5 compatibility and verified using cme fix dpkg-copyright -- Andreas Tille Mon, 26 Mar 2012 15:04:33 +0200 r-cran-epi (1.1.24-1) unstable; urgency=low * New upstream version -- Andreas Tille Tue, 25 Oct 2011 16:49:43 +0200 r-cran-epi (1.1.20-1) unstable; urgency=low * New upstream version * Standards-Version: 3.9.2 (no changes needed) * Fixed Vcs fields * Debhelper 8 (control+compat) -- Andreas Tille Tue, 05 Jul 2011 14:31:41 +0200 r-cran-epi (1.1.17-1) unstable; urgency=low * New upstream version * Standards-Version: 3.9.1 (no changes needed) -- Andreas Tille Wed, 24 Nov 2010 12:13:57 +0100 r-cran-epi (1.1.15-1) unstable; urgency=low * New upstream version -- Andreas Tille Fri, 25 Jun 2010 13:23:17 +0200 r-cran-epi (1.1.14-1) unstable; urgency=low * New upstream version * Added README.Debian to explain how package can be verified -- Andreas Tille Fri, 04 Jun 2010 13:08:00 +0200 r-cran-epi (1.1.12-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.8.4 (no changes needed) - Changed Architecture from all to any because this version ships a binary library * debian/{control,rules}: Depends: ${R:Depends} * Source format 3.0 (quilt) -- Andreas Tille Tue, 18 May 2010 14:28:05 +0200 r-cran-epi (1.1.10-1) unstable; urgency=low * New upstream version -- Andreas Tille Thu, 21 Jan 2010 11:34:41 +0100 r-cran-epi (1.1.9-1) unstable; urgency=low * New upstream version -- Andreas Tille Tue, 01 Dec 2009 19:02:42 +0100 r-cran-epi (1.1.7-1) unstable; urgency=low * New upstream version * Standards-Version: 3.8.3 (no changes needed) -- Andreas Tille Tue, 06 Oct 2009 14:11:37 +0200 r-cran-epi (1.0.12-1) unstable; urgency=low * Initial release (closes: #515641). -- Andreas Tille Tue, 17 Feb 2009 17:28:26 +0100 debian/compat0000644000000000000000000000000212144655074010374 0ustar 9 debian/dirs0000644000000000000000000000004311247717502010055 0ustar usr/share/doc/r-cran-epi/examples debian/docs0000644000000000000000000000002311733175776010055 0ustar debian/README.test