debian/0000755000000000000000000000000012265251465007176 5ustar debian/control0000644000000000000000000000250712265251453010602 0ustar Source: r-cran-epir Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-cran-survival, r-cran-hmisc Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-epir/trunk Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-epir/trunk/ Homepage: http://cran.r-project.org/web/packages/epiR Package: r-cran-epir Architecture: all Depends: ${shlibs:Depends}, ${R:Depends}, r-cran-survival, r-cran-hmisc Suggests: r-cran-surveillance, r-cran-epi, r-cran-epibasix, r-cran-epitools Description: GNU R Functions for analysing epidemiological data A package for analysing epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations. debian/rules0000755000000000000000000000057112214301151010237 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules file for the Debian/GNU Linux r-cran-epir package # Copyright 2008 by Andreas Tille include /usr/share/R/debian/r-cran.mk # Require a number equal or superior than the R version the package was built with. install/$(package):: chmod a-x debian/$(package)/usr/lib/R/site-library/epiR/DESCRIPTION debian/watch0000644000000000000000000000011012214301151010175 0ustar version=3 http://cran.r-project.org/src/contrib/epiR_([-\d.]+)\.tar\.gz debian/copyright0000644000000000000000000000234412214301151011112 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: EpiR Upstream-Contact: Mark Stevenson Source: http://cran.r-project.org/web/packages/epiR Files: * Copyright: 2009-2012 Mark Stevenson with contributions from Telmo Nunes, Javier Sanchez, and Ron Thornton License: GPL-2+ Files: debian/* Copyright: 2008-2012 Andreas Tille 2009 Charles Plessy License: GPL-2+ License: GPL-2+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the complete text of the GNU Public License version 2 can be found in `/usr/share/common-licenses/GPL-2'. debian/source/0000755000000000000000000000000012214301151010454 5ustar debian/source/format0000644000000000000000000000001412214301151011662 0ustar 3.0 (quilt) debian/README.test0000644000000000000000000000054212214301151011013 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(epiR)’ in order to confirm its integrity. -- Andreas Tille Fri, 30 Jul 2010 23:09:30 +0200 debian/changelog0000644000000000000000000000512212265251465011050 0ustar r-cran-epir (0.9-54-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * canonical Vcs fields -- Andreas Tille Tue, 14 Jan 2014 15:59:03 +0100 r-cran-epir (0.9-48-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.9.4 (no changes needed) - DM-Upload-Allowed removed - debhelper 9 (also debian/compat) - normalised using `cme fix dpkg-control` - drop versioned Build-Depends from r-base-dev because the version in latest stable is sufficient -- Andreas Tille Wed, 15 May 2013 13:33:15 +0200 r-cran-epir (0.9-38-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222), r-cran-survival, r-cran-hmisc - Depends: r-cran-survival, r-cran-hmisc * debian/rules: - Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk * debian/README.Debian is rather README.test * debian/docs: Install README.test * debian/copyright: Enhanced DEP5 compatibility and verified using cme fix dpkg-copyright -- Andreas Tille Mon, 26 Mar 2012 16:09:03 +0200 r-cran-epir (0.9-32-1) unstable; urgency=low * New upstream version * Standards-Version: 3.9.2 (no changes needed) * Debhelper 8 (control+compat) * debian/control: Fixed Vcs fields * debian/rules: Fix permission of DESCRIPTION -- Andreas Tille Wed, 26 Oct 2011 09:05:46 +0200 r-cran-epir (0.9-27-1) unstable; urgency=low * New upstream version -- Andreas Tille Wed, 24 Nov 2010 13:11:39 +0100 r-cran-epir (0.9-26-1) unstable; urgency=low * New upstream version * Standards-Version: 3.9.1 (no changes needed) * Depend on a version equal or superior than the R upstream release that was used to build this package, using a R:Depends substvar (debian/control, debian/rules). * debian/README.Debian: explain how to test this package * Using Dpkg source format version ‘3.0 (quilt)’ (debian/source/format) -- Andreas Tille Fri, 30 Jul 2010 23:09:30 +0200 r-cran-epir (0.9-22-1) unstable; urgency=low + New upstream version * Next try of initial release which hopefully finally Closes: #557199 -- Andreas Tille Sun, 24 Jan 2010 17:58:45 +0100 r-cran-epir (0.9-19-1) unstable; urgency=low * Initial release (closes: #557199). -- Andreas Tille Thu, 19 Nov 2009 15:38:39 +0100 debian/compat0000644000000000000000000000000212214301151010352 0ustar 9 debian/docs0000644000000000000000000000002312214301151010022 0ustar debian/README.test