debian/0000755000000000000000000000000012205400740007160 5ustar debian/README.test0000644000000000000000000000044212205400740011016 0ustar Notes on how this package can be tested. ──────────────────────────────────────── This package can be tested by loading it into R with the command ‘library(fastcluster)’ in order to confirm its integrity. debian/README.Debian0000644000000000000000000000053612205153530011227 0ustar r-cran-fastcluster for Debian ============================= The source code also contains a Python module for fastcluster which is not yet regarded inside the packaging. Feel free to contact us using reportbug (severity wishlist) if you would like to use this module as well. -- Andreas Tille Wed, 21 Aug 2013 16:50:16 +0200 debian/source/0000755000000000000000000000000012144654606010476 5ustar debian/source/format0000644000000000000000000000001411301174376011677 0ustar 3.0 (quilt) debian/docs0000644000000000000000000000002311733175776010055 0ustar debian/README.test debian/copyright0000644000000000000000000000334612205400133011115 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: fastcluster Upstream-Contact: Daniel Müllner Source: http://cran.r-project.org/src/contrib/ Files: * Copyright: 2011-2013 Daniel Müllner License: BSDlike License: BSDlike Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Comment: These files can also be used under GPL-2+ license /usr/share/common-licenses/GPL-2 Files: debian/* Copyright: 2013 Andreas Tille License: BSDlike debian/upstream0000644000000000000000000000047512205373527010765 0ustar Reference: Author: Daniel Müllner Title: "fastcluster: Fast Hierarchical, Agglomerative Clustering Routines for R and Python" Journal: Journal of Statistical Software Year: 2013 Volume: 53 Number: 9 Pages: 1--18 URL: http://www.jstatsoft.org/v53/i09/ eprint: http://www.jstatsoft.org/v53/i09/paper debian/rules0000755000000000000000000000025712205372342010252 0ustar #!/usr/bin/make -f # -*- makefile -*- include /usr/share/R/debian/r-cran.mk install/$(package):: rm -rf debian/$(package)/usr/lib/R/site-library/$(cranName)/LICENSE debian/links0000644000000000000000000000015012205374615010232 0ustar usr/lib/R/site-library/fastcluster/doc/fastcluster.pdf usr/share/doc/r-cran-fastcluster/fastcluster.pdf debian/watch0000644000000000000000000000011712205152403010210 0ustar version=3 http://cran.r-project.org/src/contrib/fastcluster_([-\d.]*)\.tar\.gz debian/changelog0000644000000000000000000000024312205377052011042 0ustar r-cran-fastcluster (1.1.11-1) unstable; urgency=low * Initial release (closes: #720477) -- Andreas Tille Wed, 21 Aug 2013 16:50:16 +0200 debian/compat0000644000000000000000000000000212144655074010374 0ustar 9 debian/control0000644000000000000000000000247112205153404010571 0ustar Source: r-cran-fastcluster Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-fastcluster/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-fastcluster/trunk/ Homepage: http://cran.r-project.org/web/packages/fastcluster/index.html Package: r-cran-fastcluster Architecture: any Depends: ${shlibs:Depends}, ${R:Depends} Description: Fast hierarchical clustering routines for GNU R Fastcluster implements fast hierarchical, agglomerative clustering routines. Part of the functionality is designed as drop-in replacement for existing routines: “linkage” in the SciPy package “scipy.cluster.hierarchy”, “hclust” in R's “stats” package, and the “flashClust” package. It provides the same functionality with the benefit of a much faster implementation. Moreover, there are memory-saving routines for clustering of vector data, which go beyond what the existing packages provide. For information on how to install the Python files, see the file INSTALL in the source distribution.