debian/0000755000000000000000000000000012140062016007156 5ustar debian/compat0000644000000000000000000000000212140061276010363 0ustar 9 debian/README.test0000644000000000000000000000017611602634042011026 0ustar After installing this package, you can test it with the commands in the directory “/usr/share/doc/r-cran-genetics/tests”. debian/copyright0000644000000000000000000000371612140061520011117 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: http://cran.r-project.org/src/contrib/genetics_1.3.8.tar.gz Files: * Copyright: Genetics is copyright 2003-2008 of Gregory Warnes , with contributions from David Duffy , Gregor Gorjanc, Friedrich Leisch, and Michael Man. License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. Comment: On a Debian GNU/Linux system, the GNU General Public License version 2 is included in the file ‘/usr/share/common-licenses/GPL-2’. Files: inst/doc/Rnews.sty Copyright: see the source file. License: Rnews.sty For the copyright see the source file. . Any modified versions of this file must be renamed with new filenames distinct from Rnews.sty. . For distribution of the original source see the terms for copying and modification in the file Rnews.dtx. . This generated file may be distributed as long as the original source files, as listed above, are part of the same distribution. (The sources need not necessarily be in the same archive or directory.) Files: debian/* Copyright: © 2008 Steffen Moeller License: same-as-genetics This package was created by Steffen Moeller , based on work for the r-cran-rodbc package of Dirk Eddelbuettel . debian/changelog0000644000000000000000000000654212140062001011031 0ustar r-cran-genetics (1.3.8-1) unstable; urgency=low * New upstream release. * Normalised VCS URLs following Lintian's standard. * Removed obsolete DM-Upload-Allowed field. * Using Debhelper 9. * Acquire R:Depends directly from r-base-dev. * Normalised VCS URLs following Lintian's standard. * Conforms with Policy 3.9.4. -- Charles Plessy Wed, 01 May 2013 09:37:59 +0900 r-cran-genetics (1.3.6-2) unstable; urgency=low * debian/control: - (Build-)Depend on r-cran-mass, which provides r-cran-vr (LP: #755951). - Corrected VCS URLs. - Using Debhelper 8 (debian/compat) - Incremented Standards-Version to reflect conformance with Policy 3.9.2 (no changes needed). * Formatted debian/copyright to machine-readable DEP-5 format. * Install tests in “/usr/share/doc/r-cran-genetics/tests” (debian/docs), document them (debian/README.test), and remove wrong comment that no tests are available (debian/README.Debian). -- Charles Plessy Wed, 29 Jun 2011 23:25:13 +0900 r-cran-genetics (1.3.6-1) unstable; urgency=low * New upstream version * Built with local variant of cran.mk to avoid inclusion of simple-patchsys for build process in context of source/format 3.0 (quilt). -- Steffen Moeller Sat, 05 Feb 2011 14:51:22 +0100 r-cran-genetics (1.3.5-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.9.1 (no changes needed) - + debian/rules: Require a number equal or superior than the R version the package was built with, using a R:Depends substvar. * debian/source/format: 3.0 (quilt) * debian/rules: No executable flag for PDF files -- Andreas Tille Mon, 24 Jan 2011 17:08:21 +0100 r-cran-genetics (1.3.4-1) unstable; urgency=low [ Charles Plessy ] * Rebuilt for R 2.10.0 (new documentation system). * debian/changelog: - Added a notice in the description that this package is obsolete. - New maintainer: the Debian Med packaging team. - Added myself to the uploaders. - Incremented Standards-Version to reflect conformance with Policy 3.8.3: Changed section to gnu-r. - Removed version in the dependency to r-base-core and r-base-dev. - Allow upload by DM uploaders. * Use Debhelper 7 (debian/control, debian/compat). * Conversion of debian/copyright to experimental machine-readable format. * Added debian/README.Debian to inform that this package is not thoroughly tested. * Added various informations about upstream in debian/upstream-metadata.yaml. [ Andreas Tille ] * Added myself to uploaders -- Andreas Tille Mon, 02 Nov 2009 11:55:48 +0100 r-cran-genetics (1.3.4-0.1) unstable; urgency=low * Non-maintainer upload * New upstream version released more than three months ago * debian/control: Added r-cran-gdata, r-cran-goods, r-cran-vr to Build-Depends to fix FTBFS * debian/control: Removed myself from uploaders as - Steffen never asked me whether I wanted to be included - Steffen never removed me despite repeated requests to do so -- Dirk Eddelbuettel Sat, 29 Nov 2008 12:56:20 -0600 r-cran-genetics (1.3.3-1) unstable; urgency=low * Initial release (closes: #492114). -- Steffen Moeller Wed, 23 Jul 2008 18:27:42 +0200 debian/source/0000755000000000000000000000000012140062016010456 5ustar debian/source/format0000644000000000000000000000001411517327006011676 0ustar 3.0 (quilt) debian/rules0000755000000000000000000000022712140061372010243 0ustar #!/usr/bin/make -f include /usr/share/R/debian/r-cran.mk install/$(package):: chmod 644 debian/$(package)/usr/lib/R/site-library/genetics/doc/*.pdf debian/docs0000644000000000000000000000000611602634042010033 0ustar tests debian/watch0000644000000000000000000000011711041700753010214 0ustar version=3 http://cran.r-project.org/src/contrib/genetics_([-0-9\.]*)\.tar\.gz debian/control0000644000000000000000000000334212140061603010564 0ustar Source: r-cran-genetics Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Section: gnu-r Priority: optional Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-cran-combinat, r-cran-mvtnorm, r-cran-gdata, r-cran-gtools, r-cran-mass Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-genetics/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-genetics/trunk/ Homepage: http://cran.r-project.org/web/packages/genetics Package: r-cran-genetics Architecture: all Depends: ${R:Depends}, ${misc:Depends}, r-recommended, r-cran-gtools, r-cran-gdata, r-cran-combinat, r-cran-mvtnorm, r-cran-mass Description: GNU R package for population genetics Classes and methods for handling genetic data. Includes The package provides a library for the statistics environment R that contains classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, and more. . NOTE: THIS PACKAGE IS NOW OBSOLETE. . The R-Genetics project has developed an set of enhanced genetics packages to replace 'genetics'. Please visit the project homepage at http://rgenetics.org for information.