Luminescence/ 0000755 0001762 0000144 00000000000 14521216670 012670 5 ustar ligges users Luminescence/NAMESPACE 0000644 0001762 0000144 00000020031 14521210044 014070 0 ustar ligges users # Generated by roxygen2: do not edit by hand
S3method("$",RLum.Analysis)
S3method("$",RLum.Data.Curve)
S3method("$",RLum.Results)
S3method("$<-",DRAC.list)
S3method("*",RLum.Data.Curve)
S3method("+",RLum.Data.Curve)
S3method("-",RLum.Data.Curve)
S3method("/",RLum.Data.Curve)
S3method("[",RLum.Analysis)
S3method("[",RLum.Data.Curve)
S3method("[",RLum.Data.Image)
S3method("[",RLum.Data.Spectrum)
S3method("[",RLum.Results)
S3method("[<-",DRAC.list)
S3method("[<-",RLum.Data.Curve)
S3method("[[",RLum.Analysis)
S3method("[[",RLum.Results)
S3method("[[<-",DRAC.list)
S3method(as.data.frame,DRAC.list)
S3method(as.data.frame,RLum.Data.Curve)
S3method(as.data.frame,RLum.Data.Spectrum)
S3method(as.data.frame,Risoe.BINfileData)
S3method(as.list,RLum.Analysis)
S3method(as.list,RLum.Data.Curve)
S3method(as.list,RLum.Data.Image)
S3method(as.list,RLum.Results)
S3method(as.matrix,RLum.Data.Curve)
S3method(as.matrix,RLum.Data.Image)
S3method(as.matrix,RLum.Data.Spectrum)
S3method(dim,RLum.Data.Curve)
S3method(dim,RLum.Data.Spectrum)
S3method(hist,RLum.Analysis)
S3method(hist,RLum.Data.Curve)
S3method(hist,RLum.Data.Image)
S3method(hist,RLum.Results)
S3method(length,RLum.Analysis)
S3method(length,RLum.Data.Curve)
S3method(length,RLum.Results)
S3method(length,Risoe.BINfileData)
S3method(merge,RLum)
S3method(names,RLum.Analysis)
S3method(names,RLum.Data.Curve)
S3method(names,RLum.Data.Image)
S3method(names,RLum.Data.Spectrum)
S3method(names,RLum.Results)
S3method(names,Risoe.BINfileData)
S3method(plot,RLum.Analysis)
S3method(plot,RLum.Data.Curve)
S3method(plot,RLum.Data.Image)
S3method(plot,RLum.Data.Spectrum)
S3method(plot,RLum.Results)
S3method(plot,Risoe.BINfileData)
S3method(plot,list)
S3method(print,DRAC.highlights)
S3method(print,DRAC.list)
S3method(rep,RLum)
S3method(row.names,RLum.Data.Spectrum)
S3method(subset,RLum.Analysis)
S3method(subset,Risoe.BINfileData)
S3method(summary,RLum.Analysis)
S3method(summary,RLum.Data.Curve)
S3method(summary,RLum.Data.Image)
S3method(summary,RLum.Results)
S3method(unlist,RLum.Analysis)
export(Analyse_SAR.OSLdata)
export(CW2pHMi)
export(CW2pLM)
export(CW2pLMi)
export(CW2pPMi)
export(PSL2Risoe.BINfileData)
export(Risoe.BINfileData2RLum.Analysis)
export(Second2Gray)
export(analyse_Al2O3C_CrossTalk)
export(analyse_Al2O3C_ITC)
export(analyse_Al2O3C_Measurement)
export(analyse_FadingMeasurement)
export(analyse_IRSAR.RF)
export(analyse_SAR.CWOSL)
export(analyse_SAR.TL)
export(analyse_baSAR)
export(analyse_pIRIRSequence)
export(analyse_portableOSL)
export(apply_CosmicRayRemoval)
export(apply_EfficiencyCorrection)
export(bin.RLum.Data.Curve)
export(bin.RLum.Data.Spectrum)
export(bin_RLum.Data)
export(calc_AliquotSize)
export(calc_AverageDose)
export(calc_CentralDose)
export(calc_CobbleDoseRate)
export(calc_CommonDose)
export(calc_CosmicDoseRate)
export(calc_FadingCorr)
export(calc_FastRatio)
export(calc_FiniteMixture)
export(calc_FuchsLang2001)
export(calc_HomogeneityTest)
export(calc_Huntley2006)
export(calc_IEU)
export(calc_Kars2008)
export(calc_Lamothe2003)
export(calc_MaxDose)
export(calc_MinDose)
export(calc_OSLLxTxDecomposed)
export(calc_OSLLxTxRatio)
export(calc_SourceDoseRate)
export(calc_Statistics)
export(calc_TLLxTxRatio)
export(calc_ThermalLifetime)
export(calc_WodaFuchs2008)
export(calc_gSGC)
export(calc_gSGC_feldspar)
export(combine_De_Dr)
export(convert_Activity2Concentration)
export(convert_BIN2CSV)
export(convert_Concentration2DoseRate)
export(convert_Daybreak2CSV)
export(convert_PSL2CSV)
export(convert_RLum2Risoe.BINfileData)
export(convert_SG2MG)
export(convert_Wavelength2Energy)
export(convert_XSYG2CSV)
export(extract_IrradiationTimes)
export(extract_ROI)
export(fit_CWCurve)
export(fit_EmissionSpectra)
export(fit_LMCurve)
export(fit_OSLLifeTimes)
export(fit_SurfaceExposure)
export(fit_ThermalQuenching)
export(get_Layout)
export(get_Quote)
export(get_RLum)
export(get_Risoe.BINfileData)
export(get_rightAnswer)
export(github_branches)
export(github_commits)
export(github_issues)
export(install_DevelopmentVersion)
export(is.RLum)
export(is.RLum.Analysis)
export(is.RLum.Data)
export(is.RLum.Data.Curve)
export(is.RLum.Data.Image)
export(is.RLum.Data.Spectrum)
export(is.RLum.Results)
export(length_RLum)
export(merge_RLum)
export(merge_RLum.Analysis)
export(merge_RLum.Data.Curve)
export(merge_RLum.Results)
export(merge_Risoe.BINfileData)
export(names_RLum)
export(plot_AbanicoPlot)
export(plot_DRCSummary)
export(plot_DRTResults)
export(plot_DetPlot)
export(plot_FilterCombinations)
export(plot_GrowthCurve)
export(plot_Histogram)
export(plot_KDE)
export(plot_NRt)
export(plot_OSLAgeSummary)
export(plot_RLum)
export(plot_RLum.Analysis)
export(plot_RLum.Data.Curve)
export(plot_RLum.Data.Image)
export(plot_RLum.Data.Spectrum)
export(plot_RLum.Results)
export(plot_ROI)
export(plot_RadialPlot)
export(plot_Risoe.BINfileData)
export(plot_ViolinPlot)
export(read_BIN2R)
export(read_Daybreak2R)
export(read_PSL2R)
export(read_RF2R)
export(read_SPE2R)
export(read_TIFF2R)
export(read_XSYG2R)
export(replicate_RLum)
export(report_RLum)
export(sTeve)
export(scale_GammaDose)
export(set_RLum)
export(set_Risoe.BINfileData)
export(smooth_RLum)
export(structure_RLum)
export(subset_SingleGrainData)
export(template_DRAC)
export(tune_Data)
export(use_DRAC)
export(verify_SingleGrainData)
export(write_R2BIN)
export(write_R2TIFF)
export(write_RLum2CSV)
exportClasses(RLum)
exportClasses(RLum.Analysis)
exportClasses(RLum.Data)
exportClasses(RLum.Data.Curve)
exportClasses(RLum.Data.Image)
exportClasses(RLum.Data.Spectrum)
exportClasses(RLum.Results)
exportClasses(Risoe.BINfileData)
exportMethods(bin_RLum.Data)
exportMethods(get_RLum)
exportMethods(get_Risoe.BINfileData)
exportMethods(length_RLum)
exportMethods(names_RLum)
exportMethods(replicate_RLum)
exportMethods(set_RLum)
exportMethods(set_Risoe.BINfileData)
exportMethods(show)
exportMethods(smooth_RLum)
exportMethods(structure_RLum)
import(data.table)
import(methods)
import(utils)
importFrom(Rcpp,evalCpp)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,axisTicks)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,gray.colors)
importFrom(grDevices,rgb)
importFrom(grDevices,topo.colors)
importFrom(grDevices,xy.coords)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axTicks)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,close.screen)
importFrom(graphics,contour)
importFrom(graphics,curve)
importFrom(graphics,frame)
importFrom(graphics,grconvertX)
importFrom(graphics,grconvertY)
importFrom(graphics,grid)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,persp)
importFrom(graphics,plot)
importFrom(graphics,plot.default)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rug)
importFrom(graphics,screen)
importFrom(graphics,segments)
importFrom(graphics,split.screen)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(httr,GET)
importFrom(httr,accept_json)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(stats,approx)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,complete.cases)
importFrom(stats,confint)
importFrom(stats,density)
importFrom(stats,dnorm)
importFrom(stats,fitted)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,nls)
importFrom(stats,nls.control)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,qf)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,smooth)
importFrom(stats,smooth.spline)
importFrom(stats,spline)
importFrom(stats,t.test)
importFrom(stats,uniroot)
importFrom(stats,update)
importFrom(stats,var)
importFrom(stats,weighted.mean)
useDynLib(Luminescence, .registration = TRUE)
Luminescence/README.md 0000644 0001762 0000144 00000012633 14521210045 014142 0 ustar ligges users
# Luminescence
The R package `'Luminescence'` by the R-Luminescence Group provides a
collection of various R functions for luminescence dating data analysis.
[](https://www.repostatus.org/#active)
[](https://zenodo.org/badge/latestdoi/23153315)
[](https://cran.r-project.org/package=Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://github.com/R-Lum/Luminescence/actions)
[](https://app.codecov.io/github/R-Lum/Luminescence?branch=master)
## Social media and other resources
Visit our [R-Luminescence homepage](https://r-luminescence.org).
## Installation
#### i. Requirements
- *Windows (32/64bit)*:
[Rtools](https://cran.r-project.org/bin/windows/Rtools/) (provided by
CRAN)
- *macOS*: [Xcode](https://developer.apple.com/) (provided by Apple)
- *Linux*: [gcc](https://gcc.gnu.org) often comes pre-installed in most
distributions.
#### ii. Install the package
Install any development versions using our [RStudio](https://posit.co)
add-in

##### The plain **R** way
To install the stable version from CRAN, simply run the following from
an R console:
``` r
install.packages("Luminescence")
```
To install the latest development builds directly from GitHub, run
``` r
if(!require("devtools"))
install.packages("devtools")
devtools::install_github("R-Lum/Luminescence@")
```
## Contribute
The R luminescence project is based on and evolves from ideas,
contributions and constructive criticism of its users. Help us to
maintain and develop the package, to find bugs and create new functions
as well as a user-friendly design. Try
or write us an
[e-mail](mailto:developers@r-luminescence.org) if anything crosses your
mind or if you want your new self-written function to be to implemented.
You are kindly invited to bring forward the package with us!
## Note
**The package comes without any guarantee!**
Please further note that this version is a development version and may
change day by day. For stable branches please visit the package on [CRAN
Luminescence](https://CRAN.R-project.org/package=Luminescence).
## License
This program is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or any later
version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the [GNU
General Public
License](https://github.com/R-Lum/Luminescence/blob/master/LICENSE) for
more details.
## Funding
- 2011-2013: The initial version of the package was developed in the
framework of the PhD thesis by Sebastian Kreutzer, while he was funded
through the DFG programme “Rekonstruktion der Umweltbedingungen des
Spätpleistozäns in Mittelsachsen anhand von Löss-Paläobodensequenzen”
([GEPRIS id: 46526743](https://gepris.dfg.de/gepris/projekt/46526743))
- 2014-2018: Cooperation and personal exchange between the developers is
gratefully funded by the DFG in the framework of the program
“Scientific Networks”. Project title: “RLum.Network: Ein
Wissenschaftsnetzwerk zur Analyse von Lumineszenzdaten mit R” ([GEPRIS
id: 250974974](https://gepris.dfg.de/gepris/projekt/250974974))
- 05/2014-12/2019: The work of Sebastian Kreutzer as maintainer of the
package was supported by [LabEx LaScArBx (ANR -
n. ANR-10-LABX-52)](https://lascarbx.labex.u-bordeaux.fr/en/).
- 01/2020-04/2022: Sebastian Kreutzer as maintainer of the package has
received funding from the European Union’s Horizon 2020 research and
innovation programme under the Marie Skłodowska-Curie grant agreement
[No 844457 (CREDit)](https://cordis.europa.eu/project/id/844457), and
could continue maintaining the package.
- since 03/2023: Sebastian Kreutzer as maintainer of the package
receives funding from the DFG Heisenberg programme [No
505822867](https://gepris.dfg.de/gepris/projekt/505822867).
- All other authors gratefully received additional funding from various
public funding bodies.
## Related projects
- [RLumModel](https://github.com/R-Lum/RLumModel)
- [RLumShiny](https://github.com/R-Lum/RLumShiny)
- [RLumDocker](https://github.com/R-Lum/RLumDocker)
- [BayLum](https://github.com/crp2a/BayLum)
- [RCarb](https://github.com/R-Lum/RCarb)
- [RLumCarlo](https://github.com/R-Lum/RLumCarlo)
Luminescence/data/ 0000755 0001762 0000144 00000000000 14521207343 013576 5 ustar ligges users Luminescence/data/ExampleData.portableOSL.rda 0000644 0001762 0000144 00000065754 13240265321 020656 0 ustar ligges users 7zXZ i"6 ! X