Luminescence/ 0000755 0001762 0000144 00000000000 13605457601 012673 5 ustar ligges users Luminescence/NAMESPACE 0000644 0001762 0000144 00000017425 13604173242 014116 0 ustar ligges users # Generated by roxygen2: do not edit by hand
S3method("$",RLum.Analysis)
S3method("$",RLum.Data.Curve)
S3method("$",RLum.Results)
S3method("$<-",DRAC.list)
S3method("*",RLum.Data.Curve)
S3method("+",RLum.Data.Curve)
S3method("-",RLum.Data.Curve)
S3method("/",RLum.Data.Curve)
S3method("[",RLum.Analysis)
S3method("[",RLum.Data.Curve)
S3method("[",RLum.Data.Image)
S3method("[",RLum.Data.Spectrum)
S3method("[",RLum.Results)
S3method("[<-",DRAC.list)
S3method("[<-",RLum.Data.Curve)
S3method("[[",RLum.Analysis)
S3method("[[",RLum.Results)
S3method("[[<-",DRAC.list)
S3method(as.data.frame,DRAC.list)
S3method(as.data.frame,RLum.Data.Curve)
S3method(as.data.frame,RLum.Data.Spectrum)
S3method(as.list,RLum.Analysis)
S3method(as.list,RLum.Data.Curve)
S3method(as.list,RLum.Results)
S3method(as.matrix,RLum.Data.Curve)
S3method(as.matrix,RLum.Data.Spectrum)
S3method(dim,RLum.Data.Curve)
S3method(dim,RLum.Data.Spectrum)
S3method(hist,RLum.Analysis)
S3method(hist,RLum.Data.Curve)
S3method(hist,RLum.Data.Image)
S3method(hist,RLum.Results)
S3method(length,RLum.Analysis)
S3method(length,RLum.Data.Curve)
S3method(length,RLum.Results)
S3method(length,Risoe.BINfileData)
S3method(merge,RLum)
S3method(names,RLum.Analysis)
S3method(names,RLum.Data.Curve)
S3method(names,RLum.Data.Image)
S3method(names,RLum.Data.Spectrum)
S3method(names,RLum.Results)
S3method(names,Risoe.BINfileData)
S3method(plot,RLum.Analysis)
S3method(plot,RLum.Data.Curve)
S3method(plot,RLum.Data.Image)
S3method(plot,RLum.Data.Spectrum)
S3method(plot,RLum.Results)
S3method(plot,Risoe.BINfileData)
S3method(plot,list)
S3method(print,DRAC.highlights)
S3method(print,DRAC.list)
S3method(rep,RLum)
S3method(row.names,RLum.Data.Spectrum)
S3method(subset,RLum.Analysis)
S3method(subset,Risoe.BINfileData)
S3method(summary,RLum.Analysis)
S3method(summary,RLum.Data.Curve)
S3method(summary,RLum.Data.Image)
S3method(summary,RLum.Results)
S3method(unlist,RLum.Analysis)
export(Analyse_SAR.OSLdata)
export(CW2pHMi)
export(CW2pLM)
export(CW2pLMi)
export(CW2pPMi)
export(PSL2Risoe.BINfileData)
export(Risoe.BINfileData2RLum.Analysis)
export(Second2Gray)
export(analyse_Al2O3C_CrossTalk)
export(analyse_Al2O3C_ITC)
export(analyse_Al2O3C_Measurement)
export(analyse_FadingMeasurement)
export(analyse_IRSAR.RF)
export(analyse_SAR.CWOSL)
export(analyse_SAR.TL)
export(analyse_baSAR)
export(analyse_pIRIRSequence)
export(analyse_portableOSL)
export(app_RLum)
export(apply_CosmicRayRemoval)
export(apply_EfficiencyCorrection)
export(bin.RLum.Data.Curve)
export(bin.RLum.Data.Spectrum)
export(bin_RLum.Data)
export(calc_AliquotSize)
export(calc_AverageDose)
export(calc_CentralDose)
export(calc_CommonDose)
export(calc_CosmicDoseRate)
export(calc_FadingCorr)
export(calc_FastRatio)
export(calc_FiniteMixture)
export(calc_FuchsLang2001)
export(calc_HomogeneityTest)
export(calc_Huntley2006)
export(calc_IEU)
export(calc_Kars2008)
export(calc_Lamothe2003)
export(calc_MaxDose)
export(calc_MinDose)
export(calc_OSLLxTxRatio)
export(calc_SourceDoseRate)
export(calc_Statistics)
export(calc_TLLxTxRatio)
export(calc_ThermalLifetime)
export(calc_WodaFuchs2008)
export(calc_gSGC)
export(convert_Activity2Concentration)
export(convert_BIN2CSV)
export(convert_Daybreak2CSV)
export(convert_PSL2CSV)
export(convert_RLum2Risoe.BINfileData)
export(convert_Wavelength2Energy)
export(convert_XSYG2CSV)
export(extract_IrradiationTimes)
export(fit_CWCurve)
export(fit_LMCurve)
export(fit_OSLLifeTimes)
export(fit_SurfaceExposure)
export(fit_ThermalQuenching)
export(get_Layout)
export(get_Quote)
export(get_RLum)
export(get_Risoe.BINfileData)
export(get_rightAnswer)
export(github_branches)
export(github_commits)
export(github_issues)
export(install_DevelopmentVersion)
export(is.RLum)
export(is.RLum.Analysis)
export(is.RLum.Data)
export(is.RLum.Data.Curve)
export(is.RLum.Data.Image)
export(is.RLum.Data.Spectrum)
export(is.RLum.Results)
export(length_RLum)
export(merge_RLum)
export(merge_RLum.Analysis)
export(merge_RLum.Data.Curve)
export(merge_RLum.Results)
export(merge_Risoe.BINfileData)
export(names_RLum)
export(plot_AbanicoPlot)
export(plot_DRCSummary)
export(plot_DRTResults)
export(plot_DetPlot)
export(plot_FilterCombinations)
export(plot_GrowthCurve)
export(plot_Histogram)
export(plot_KDE)
export(plot_NRt)
export(plot_RLum)
export(plot_RLum.Analysis)
export(plot_RLum.Data.Curve)
export(plot_RLum.Data.Image)
export(plot_RLum.Data.Spectrum)
export(plot_RLum.Results)
export(plot_RadialPlot)
export(plot_Risoe.BINfileData)
export(plot_ViolinPlot)
export(read_BIN2R)
export(read_Daybreak2R)
export(read_PSL2R)
export(read_SPE2R)
export(read_XSYG2R)
export(replicate_RLum)
export(report_RLum)
export(sTeve)
export(scale_GammaDose)
export(set_RLum)
export(set_Risoe.BINfileData)
export(smooth_RLum)
export(structure_RLum)
export(template_DRAC)
export(tune_Data)
export(use_DRAC)
export(verify_SingleGrainData)
export(write_R2BIN)
export(write_RLum2CSV)
exportClasses(RLum)
exportClasses(RLum.Analysis)
exportClasses(RLum.Data)
exportClasses(RLum.Data.Curve)
exportClasses(RLum.Data.Image)
exportClasses(RLum.Data.Spectrum)
exportClasses(RLum.Results)
exportClasses(Risoe.BINfileData)
exportMethods(bin_RLum.Data)
exportMethods(get_RLum)
exportMethods(get_Risoe.BINfileData)
exportMethods(length_RLum)
exportMethods(names_RLum)
exportMethods(replicate_RLum)
exportMethods(set_RLum)
exportMethods(set_Risoe.BINfileData)
exportMethods(show)
exportMethods(smooth_RLum)
exportMethods(structure_RLum)
import(data.table)
import(magrittr)
import(methods)
import(utils)
importClassesFrom(raster,RasterBrick)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,axisTicks)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,gray.colors)
importFrom(grDevices,rgb)
importFrom(grDevices,topo.colors)
importFrom(grDevices,xy.coords)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axTicks)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,close.screen)
importFrom(graphics,contour)
importFrom(graphics,curve)
importFrom(graphics,frame)
importFrom(graphics,grconvertX)
importFrom(graphics,grconvertY)
importFrom(graphics,grid)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,persp)
importFrom(graphics,plot)
importFrom(graphics,plot.default)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rug)
importFrom(graphics,screen)
importFrom(graphics,segments)
importFrom(graphics,split.screen)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(httr,GET)
importFrom(httr,accept_json)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(raster,brick)
importFrom(raster,contour)
importFrom(raster,nlayers)
importFrom(raster,plot)
importFrom(raster,plotRGB)
importFrom(raster,raster)
importFrom(stats,approx)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,complete.cases)
importFrom(stats,confint)
importFrom(stats,density)
importFrom(stats,dnorm)
importFrom(stats,fitted)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,nls)
importFrom(stats,nls.control)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,qf)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,smooth)
importFrom(stats,smooth.spline)
importFrom(stats,spline)
importFrom(stats,t.test)
importFrom(stats,uniroot)
importFrom(stats,update)
importFrom(stats,var)
importFrom(stats,weighted.mean)
useDynLib(Luminescence, .registration = TRUE)
Luminescence/README.md 0000644 0001762 0000144 00000010557 13604173247 014162 0 ustar ligges users
# Luminesence
The R package ‘Luminescence’ by the R-Luminescence Group provides a
collection of various R functions for luminescence dating data analysis.
[](https://www.repostatus.org/#active)
[](https://cran.r-project.org/package=Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://ci.appveyor.com/project/tzerk/luminescence/branch/master)
[](https://travis-ci.org/R-Lum/Luminescence)
[](https://codecov.io/github/R-Lum/Luminescence?branch=master)
### CRAN check status
| error | fail | warn | note | ok |
| ----: | ---: | ---: | ---: | -: |
| 0 | 0 | 0 | 8 | 5 |
## Social media and other resources
Follow us on
[](https://www.twitter.com/RLuminescence)
or visit our [R-Luminescence homepage](http://www.r-luminescence.org).
## Installation
#### i. Requirements
**Windows (32/64bit)** - ‘Rtools’ (provided by CRAN)
**Mac OS X** - ‘Xcode’ (provided by Apple)
For **Linux** users *gcc* often comes pre-installed in most
distributions. Should *gcc* be not available, however, we kindly refer
to the exhaustive collection of installation guides depending on the
linux distribution.
#### ii. Install the package
Install any development versions using our *RStudio* add-in

##### The plain **R** way
To install the stable version from CRAN, simply run the following from
an R console:
``` r
install.packages("Luminescence")
```
To install the latest development builds directly from GitHub, run
``` r
if(!require("devtools"))
install.packages("devtools")
devtools::install_github("R-Lum/Luminescence@")
```
## Contribute
The R luminescence project is based on and evolves from ideas,
contributions and constructive criticism of its users. Help us to
maintain and develop the package, to find bugs and create new functions
as well as a user-friendly design. Try
or write us an
[e-mail](mailto:developers@r-luminescence.org) if anything crosses your
mind or if you want your new self-written function to be to implemented.
You are kindly invited to bring forward the package with us\!
## Note
**The package comes without any guarantee\!**
Please further note that this version is a development version and may
change day by day. For stable branches please visit the package on [CRAN
‘Luminescence’](https://cran.r-project.org/package=Luminescence).
## License
This program is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or any later
version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the [GNU
General Public
License](https://github.com/R-Lum/Luminescence/blob/master/LICENSE) for
more details.
## Related projects
- [RLumModel](https://github.com/R-Lum/RLumModel)
- [RLumShiny](https://github.com/R-Lum/RLumShiny)
- [BayLum](https://github.com/R-Lum/BayLum)
- [RLumDocker](https://github.com/R-Lum/RLumDocker)
- [RCarb](https://github.com/R-Lum/RCarb)
## R package dependencies

Luminescence/data/ 0000755 0001762 0000144 00000000000 13604167036 013603 5 ustar ligges users Luminescence/data/ExampleData.portableOSL.rda 0000644 0001762 0000144 00000065754 13240265321 020656 0 ustar ligges users 7zXZ i"6 ! X