debian/0000755000000000000000000000000012265472537007203 5ustar debian/source/0000755000000000000000000000000012265472537010503 5ustar debian/source/format0000644000000000000000000000001412265472537011711 0ustar 3.0 (quilt) debian/control0000644000000000000000000000174112265472537010611 0ustar Source: r-cran-maldiquant Section: gnu-r Priority: optional Maintainer: The Debichem Group Uploaders: Filippo Rusconi Build-Depends: debhelper (>= 9), cdbs, r-base-dev (>= 3.0.0) Standards-Version: 3.9.5 Homepage: http://cran.r-project.org/web/packages/MALDIquant/index.html Vcs-Git: git://anonscm.debian.org/debichem/packages/r-cran-maldiquant.git Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debichem/packages/r-cran-maldiquant.git Package: r-cran-maldiquant Architecture: any Depends: ${misc:Depends}, ${shlibs:Depends}, ${R:Depends} Description: GNU R package for quantitative analysis of mass spectrometry data MALDIquant provides a complete analysis pipeline for MALDI-TOF and other mass spectrometry data. Distinctive features include baseline subtraction using the SNIP algorithm, peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions. debian/compat0000644000000000000000000000000212265472537010401 0ustar 9 debian/upstream0000644000000000000000000000112012265472537010760 0ustar Name: MALDIquant Homepage: http://strimmerlab.org/software/maldiquant/ Reference: Author: Gibb, Sebastian and Strimmer, Korbinian DOI: 10.1093/bioinformatics/bts447 Eprint: http://bioinformatics.oxfordjournals.org/content/28/17/2270.full.pdf+html Journal: Bioinformatics Number: 17 Pages: 2270-2271 PMID: 22796955 Title: MALDIquant: a versatile R package for the analysis of mass spectrometry data URL: http://bioinformatics.oxfordjournals.org/content/28/17/2270.abstract Volume: 28 Year: 2012 Repository: http://cran.r-project.org/web/packages/MALDIquant/index.html debian/copyright0000644000000000000000000000363512265472537011145 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: MALDIquant Upstream-Contact: Sebastian Gibb Source: http://cran.r-project.org/web/packages/MALDIquant/index.html Files: * Copyright: 2011, 2012 Sebastian Gibb License: GPL-3 This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. Files: debian/* Copyright: 2012 Sebastian Gibb License: GPL-3 This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. debian/rules0000755000000000000000000000103112265472537010256 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules file for the Debian/GNU Linux r-cran-maldiquant package # Copyright 2014 by Sebastian Gibb include /usr/share/R/debian/r-cran.mk DEB_INSTALL_DOCS_ALL := DEB_INSTALL_CHANGELOGS_ALL := NEWS ## set custom build flags to harden MALDIquant.so lib makeFlagsCall := MAKEFLAGS="CFLAGS+=${CFLAGS} CPPFLAGS+=${CPPFLAGS} LDFLAGS+=${LDFLAGS}" get-orig-source: ## download newest version from CRAN uscan --no-conf --force-download --no-symlink --destdir ../tarballs debian/watch0000644000000000000000000000011512265472537010231 0ustar version=3 http://cran.r-project.org/src/contrib/MALDIquant_([\d\.]*).tar.gz debian/changelog0000644000000000000000000000406012265472537011055 0ustar r-cran-maldiquant (1.9-1) unstable; urgency=low * New upstream release. * Replace own build script by a cdbs based one: - debian/control.in: removed. - debian/control: add cdbs to Build-Depends. - debian/rules: use cdbs based build script. * debian/rules: set custom makeFlags to harden MALDIquant.so. * debian/control: set Standards-Version to 3.9.5. * Upload by Filippo Rusconi -- The Debichem Group Tue, 14 Jan 2014 19:54:17 +0100 r-cran-maldiquant (1.8-1) unstable; urgency=low * New upstream release. * Remove debian/lintian-overrides, hardening-no-fortify-functions is not needed anymore. * debian/control.in: use canonical URI in Vcs-* fields. * Upload by Filippo Rusconi . -- The Debichem Group Sun, 08 Sep 2013 18:00:16 +0200 r-cran-maldiquant (1.7-1) unstable; urgency=low * New upstream release. * debian/lintian-overrides: add hardening-no-fortify-functions. * debian/{compat,control.in}: set debhelper (>=9). * debian/rules: - Remove useless LICENSE removing statement. - Add CFLAGS and CPPFLAGS. - Remove own LDFLAGS definition (is set automatically by debhelper >= 9). * Uploaded by Filippo Rusconi . -- The Debichem Group Thu, 30 May 2013 07:43:31 +0200 r-cran-maldiquant (1.6-1) unstable; urgency=low * New upstream release. -- The Debichem Group Sat, 02 Mar 2013 11:36:28 +0100 r-cran-maldiquant (1.5-1) unstable; urgency=low * New upstream release. * Uploaded by Filippo Rusconi . -- Filippo Rusconi Mon, 10 Dec 2012 17:01:20 +0100 r-cran-maldiquant (1.4-1) unstable; urgency=low * Initial release by Sebastian Gibb (Closes: #693919). * Uploaded by Filippo Rusconi . -- The Debichem Group Sun, 18 Nov 2012 21:55:27 +0100