debian/0000755000000000000000000000000012221050657007166 5ustar debian/source/0000755000000000000000000000000012221050657010466 5ustar debian/source/format0000644000000000000000000000001412221050657011674 0ustar 3.0 (quilt) debian/control0000644000000000000000000000247312221255114010572 0ustar # DO NOT EDIT! This file is autogenerated by debian/rules:override_dh_clean. # Use debian/control.in instead. Source: r-cran-maldiquantforeign Section: gnu-r Priority: optional Maintainer: The Debichem Group Uploaders: Filippo Rusconi Build-Depends: debhelper (>= 9), r-base-dev (>= 3.0.0), r-cran-base64enc, r-cran-digest, r-cran-downloader, r-cran-maldiquant (>= 1.8), r-cran-readbrukerflexdata (>= 1.7), r-cran-readmzxmldata (>= 2.7), r-cran-xml Standards-Version: 3.9.4 Homepage: http://cran.r-project.org/web/packages/MALDIquantForeign/index.html Vcs-Git: git://anonscm.debian.org/debichem/packages/r-cran-maldiquantforeign.git Vcs-Browser: http://anonscm.debian.org/git/debichem/packages/r-cran-maldiquantforeign.git Package: r-cran-maldiquantforeign Architecture: any Depends: ${misc:Depends}, ${R:Depends}, r-cran-base64enc, r-cran-digest, r-cran-downloader, r-cran-maldiquant (>= 1.8), r-cran-readbrukerflexdata (>= 1.7), r-cran-readmzxmldata (>= 2.7), r-cran-xml Description: GNU R package providing import/export routines for MALDIquant The MALDIquantForeign package reads (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5) and writes (tab, csv, msd, mzML) different file formats of mass spectrometry data into/from MALDIquant objects. debian/compat0000644000000000000000000000000212221050657010364 0ustar 9 debian/control.in0000644000000000000000000000232712221050657011202 0ustar Source: r-cran-maldiquantforeign Section: gnu-r Priority: optional Maintainer: The Debichem Group Uploaders: Filippo Rusconi Build-Depends: debhelper (>= 9), r-base-dev (@R_DEPENDS_VERSION@), r-cran-base64enc, r-cran-digest, r-cran-downloader, r-cran-maldiquant (>= 1.8), r-cran-readbrukerflexdata (>= 1.7), r-cran-readmzxmldata (>= 2.7), r-cran-xml Standards-Version: 3.9.4 Homepage: http://cran.r-project.org/web/packages/MALDIquantForeign/index.html Vcs-Git: git://anonscm.debian.org/debichem/packages/r-cran-maldiquantforeign.git Vcs-Browser: http://anonscm.debian.org/git/debichem/packages/r-cran-maldiquantforeign.git Package: r-cran-maldiquantforeign Architecture: any Depends: ${misc:Depends}, ${R:Depends}, r-cran-base64enc, r-cran-digest, r-cran-downloader, r-cran-maldiquant (>= 1.8), r-cran-readbrukerflexdata (>= 1.7), r-cran-readmzxmldata (>= 2.7), r-cran-xml Description: GNU R package providing import/export routines for MALDIquant The MALDIquantForeign package reads (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5) and writes (tab, csv, msd, mzML) different file formats of mass spectrometry data into/from MALDIquant objects. debian/copyright0000644000000000000000000000364312221050657011127 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: MALDIquantForeign Upstream-Contact: Sebastian Gibb Source: http://cran.r-project.org/web/packages/MALDIquantForeign/index.html Files: * Copyright: 2012-2013 Sebastian Gibb License: GPL-3 This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. Files: debian/* Copyright: 2013 Sebastian Gibb License: GPL-3 This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. debian/rules0000755000000000000000000000266212221050657010254 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules file for the Debian/GNU Linux r-cran-readbrukerflexdata package # Copyright 2013 by Sebastian Gibb # Uncomment this to turn on verbose mode. export DH_VERBOSE=1 PACKAGE := $(shell dpkg-parsechangelog | sed -n 's/^Source: *//p') CRANVERSION ?= $(shell uscan --no-conf --dehs | sed -n 's/.*\([0-9.]\+\)<\/upstream-version>.*/\1/p') RVERSION := $(shell grep "Depends: R" DESCRIPTION | sed 's/^Depends:.* R *(\([><= 0-9.]\+\)).*/\1/') RLIB := usr/lib/R/site-library %: dh $@ override_dh_clean: dh_clean ## autogenerate debian/control echo "# DO NOT EDIT! This file is autogenerated by debian/rules:override_dh_clean." > debian/control echo "# Use debian/control.in instead.\n" >> debian/control sed "s/@R_DEPENDS_VERSION@/${RVERSION}/" debian/control.in >> debian/control override_dh_installchangelogs: dh_installchangelogs NEWS override_dh_auto_install: ## create target directory dh_installdirs ${RLIB} ## use debian/${PACKAGE}.substvars to support debian/control ${R:Depends} echo "R:Depends=r-base-core (${RVERSION})" >> debian/${PACKAGE}.substvars ## install r package MAKEFLAGS="CFLAGS+=${CFLAGS} CPPFLAGS+=${CPPFLAGS} LDFLAGS+=${LDFLAGS}" R CMD INSTALL --library=${CURDIR}/debian/${PACKAGE}/${RLIB} --clean . get-orig-source: ## download newest ${PACKAGE} from CRAN uscan --no-conf --force-download --no-symlink --destdir ../tarballs debian/watch0000644000000000000000000000012412221050657010214 0ustar version=3 http://cran.r-project.org/src/contrib/MALDIquantForeign_([\d\.]*).tar.gz debian/changelog0000644000000000000000000000030312221050657011034 0ustar r-cran-maldiquantforeign (0.5.1-1) unstable; urgency=low * Initial release. (Closes: #723984) -- The Debichem Group Fri, 20 Sep 2013 22:04:39 +0200