debian/0000755000000000000000000000000012135637351007174 5ustar debian/watch0000644000000000000000000000010711135417117010216 0ustar version=3 http://cran.r-project.org/src/contrib/msm_([-\d.]*)\.tar\.gz debian/compat0000644000000000000000000000000211734100200010350 0ustar 8 debian/links0000644000000000000000000000007711155162761010242 0ustar usr/lib/R/site-library/msm/NEWS usr/share/doc/r-cran-msm/NEWS debian/docs0000644000000000000000000000002311734100200010020 0ustar debian/README.test debian/changelog0000644000000000000000000000506012135637254011051 0ustar r-cran-msm (1.1.4-1) unstable; urgency=low * Upgraded to current upstream version 1.1.4 * debian/control: Set Build-Depends: to current R version * debian/control: Set Standards-Version: to current version * (Re-)building with R 3.0.0 -- Dirk Eddelbuettel Tue, 23 Apr 2013 21:08:44 -0500 r-cran-msm (1.1-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) - Fixed Vcs fields * debian/rules: - Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk * debhelper compat level 8 (control+compat) * debian/README.Debian is now README.test, deleted other redundant information which seems to be irrelevant for the user * debian/docs: Install README.test * debian/upstream: obtained citation data from inst/CITATION * debian/copyright: Rewritten to match DEP5 and verified using cme fix dpkg-copyright -- Andreas Tille Mon, 26 Mar 2012 16:37:46 +0200 r-cran-msm (1.0-1) unstable; urgency=low * New upstream version * Standards-Version: 3.9.1 * debian/rules: use $(package) variable * debian/source/format: 3.0 (quilt) -- Andreas Tille Wed, 01 Dec 2010 09:41:05 +0100 r-cran-msm (0.9.7-1) unstable; urgency=low * New upstream version -- Andreas Tille Thu, 20 May 2010 15:36:53 +0200 r-cran-msm (0.9.6-1) unstable; urgency=low * New upstream version * Incremented Standards-Version to reflect conformance with Policy 3.8.4 (debian/control, no changes needed). * Depend on a version equal or superior than the R version used to build the package, by adding a R:Depends substvar (debian/control, debian/rules). -- Andreas Tille Tue, 09 Mar 2010 22:27:37 +0100 r-cran-msm (0.9.5-1) unstable; urgency=low * New upstream version -- Andreas Tille Tue, 01 Dec 2009 19:16:01 +0100 r-cran-msm (0.9.4-1) unstable; urgency=low * New upstream version -- Andreas Tille Tue, 24 Nov 2009 09:46:24 +0100 r-cran-msm (0.9.3-1) unstable; urgency=low * New upstream version * Fixed cut-n-pasto in debian/copyright (package name) * Standards-Version: 3.8.3 (no changes needed) * Change section to gnu-r -- Andreas Tille Fri, 28 Aug 2009 08:50:50 +0200 r-cran-msm (0.8.2-1) unstable; urgency=low * Initial release (Closes: #512405). -- Andreas Tille Wed, 15 Apr 2009 15:10:36 +0200 debian/rules0000755000000000000000000000047011734154170010252 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules file for the Debian/GNU Linux r-cran-msm package # Copyright 2009 by Andreas Tille include /usr/share/R/debian/r-cran.mk clean:: rm -f src/msm.so install/$(package):: chmod 644 debian/$(package)/usr/lib/R/site-library/msm/NEWS debian/source/0000755000000000000000000000000012135637013010467 5ustar debian/source/format0000644000000000000000000000001411475406462011705 0ustar 3.0 (quilt) debian/README.test0000644000000000000000000000034111734100200011006 0ustar R msm for Debian ---------------- This package can be tested by loading it into R with the command ‘library(msm)’ in order to confirm its integrity. -- Andreas Tille Fri, 16 Jan 2009 20:43:13 +0100 debian/copyright0000644000000000000000000000230611734152700011122 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: msm Upstream-Contact: Christopher Jackson Source: http://cran.r-project.org/web/packages/msm/ Files: * Copyright: 2008-2012 Christopher Jackson License: GPL-2+ Files: debian/* Copyright: 2009-2012 Andreas Tille License: GPL-2+ License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. . Comment: On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL'. debian/control0000644000000000000000000000211712135637205010576 0ustar Source: r-cran-msm Section: gnu-r Priority: optional Maintainer: Debian Science Team Uploaders: Andreas Tille DM-Upload-Allowed: yes Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 3.0.0), r-cran-mvtnorm, r-cran-survival Standards-Version: 3.9.4 Homepage: http://cran.r-project.org/web/packages/msm/ Vcs-Browser: http://svn.debian.org/wsvn/debian-science/packages/R/r-cran-msm/trunk/ Vcs-Svn: svn://svn.debian.org/debian-science/packages/R/r-cran-msm/trunk/ Package: r-cran-msm Architecture: any Depends: ${shlibs:Depends}, ${R:Depends}, r-cran-mvtnorm, r-cran-survival Description: GNU R Multi-state Markov and hidden Markov models in continuous time Functions for fitting general continuous-time Markov and hidden Markov multi-state models to longitudinal data. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates. A variety of observation schemes are supported, including processes observed at arbitrary times, completely-observed processes, and censored states. debian/upstream0000644000000000000000000000037111734151745010762 0ustar Reference: Author: Christopher H. Jackson Title: "Multi-State Models for Panel Data: The msm Package for R" Journal: Journal of Statistical Software Year: 2011 Volume: 38 Number: 8 Pages: 1--29 URL: http://www.jstatsoft.org/v38/i08/