debian/0000755000000000000000000000000012166544004007170 5ustar debian/source/0000755000000000000000000000000012166544004010470 5ustar debian/source/format0000644000000000000000000000001412166544004011676 0ustar 3.0 (quilt) debian/control0000644000000000000000000000174012166544260010601 0ustar # DO NOT EDIT! This file is autogenerated by debian/rules:override_dh_clean. # Use debian/control.in instead. Source: r-cran-readmzxmldata Section: gnu-r Priority: optional Maintainer: The Debichem Group Uploaders: Filippo Rusconi Build-Depends: debhelper (>= 9), r-base-dev (>= 2.15.0), r-cran-base64enc, r-cran-digest, r-cran-xml Standards-Version: 3.9.4 Homepage: http://cran.r-project.org/web/packages/readMzXmlData/index.html Vcs-Git: git://anonscm.debian.org/debichem/packages/r-cran-readmzxmldata.git Vcs-Browser: http://anonscm.debian.org/git/debichem/packages/r-cran-readmzxmldata.git Package: r-cran-readmzxmldata Architecture: any Suggests: r-cran-maldiquant Depends: r-cran-base64enc, r-cran-digest, r-cran-xml, ${misc:Depends}, ${R:Depends} Description: GNU R package to read mass spectrometry data in mzXML format The readMzXmlData package contains functions for reading mass spectrometry data in mzXML format. debian/compat0000644000000000000000000000000212166544004010366 0ustar 9 debian/lintian-overrides0000644000000000000000000000005312166544004012547 0ustar extended-description-is-probably-too-short debian/control.in0000644000000000000000000000157312166544004011206 0ustar Source: r-cran-readmzxmldata Section: gnu-r Priority: optional Maintainer: The Debichem Group Uploaders: Filippo Rusconi Build-Depends: debhelper (>= 9), r-base-dev (@R_DEPENDS_VERSION@), r-cran-base64enc, r-cran-digest, r-cran-xml Standards-Version: 3.9.4 Homepage: http://cran.r-project.org/web/packages/readMzXmlData/index.html Vcs-Git: git://anonscm.debian.org/debichem/packages/r-cran-readmzxmldata.git Vcs-Browser: http://anonscm.debian.org/git/debichem/packages/r-cran-readmzxmldata.git Package: r-cran-readmzxmldata Architecture: any Suggests: r-cran-maldiquant Depends: r-cran-base64enc, r-cran-digest, r-cran-xml, ${misc:Depends}, ${R:Depends} Description: GNU R package to read mass spectrometry data in mzXML format The readMzXmlData package contains functions for reading mass spectrometry data in mzXML format. debian/copyright0000644000000000000000000000364012166544004011126 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: readBrukerFlexData Upstream-Contact: Sebastian Gibb Source: http://cran.r-project.org/web/packages/readMzXmlData/index.html Files: * Copyright: 2011-2013 Sebastian Gibb License: GPL-3 This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. Files: debian/* Copyright: 2013 Sebastian Gibb License: GPL-3 This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. debian/rules0000755000000000000000000000264612166544004010260 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules file for the Debian/GNU Linux r-cran-readbrukerflexdata package # Copyright 2013 by Sebastian Gibb # Uncomment this to turn on verbose mode. export DH_VERBOSE=1 PACKAGE := $(shell dpkg-parsechangelog | sed -n 's/^Source: *//p') CRANVERSION ?= $(shell uscan --no-conf --dehs | sed -n 's/.*\([0-9.]\+\)<\/upstream-version>.*/\1/p') RVERSION := $(shell grep "Depends: R" DESCRIPTION | sed 's/.*(\([><= 0-9.]\+\)).*/\1/') RLIB := usr/lib/R/site-library %: dh $@ override_dh_clean: dh_clean ## autogenerate debian/control echo "# DO NOT EDIT! This file is autogenerated by debian/rules:override_dh_clean." > debian/control echo "# Use debian/control.in instead.\n" >> debian/control sed "s/@R_DEPENDS_VERSION@/${RVERSION}/" debian/control.in >> debian/control override_dh_installchangelogs: dh_installchangelogs NEWS override_dh_auto_install: ## create target directory dh_installdirs ${RLIB} ## use debian/${PACKAGE}.substvars to support debian/control ${R:Depends} echo "R:Depends=r-base-core (${RVERSION})" >> debian/${PACKAGE}.substvars ## install r package MAKEFLAGS="CFLAGS+=${CFLAGS} CPPFLAGS+=${CPPFLAGS} LDFLAGS+=${LDFLAGS}" R CMD INSTALL --library=${CURDIR}/debian/${PACKAGE}/${RLIB} --clean . get-orig-source: ## download newest ${PACKAGE} from CRAN uscan --no-conf --force-download --no-symlink --destdir ../tarballs debian/watch0000644000000000000000000000012012166544004010212 0ustar version=3 http://cran.r-project.org/src/contrib/readMzXmlData_([\d\.]*).tar.gz debian/changelog0000644000000000000000000000057512166544004011051 0ustar r-cran-readmzxmldata (2.7-1) unstable; urgency=low [ The Debichem Group ] * Initial release of the Debian packaging by Sebastian Gibb . (Closes: #714884) [ Filippo Rusconi ] * Fixes to the Vcs fields of d/control to comply with the canonical style. * Upload. -- Filippo Rusconi Mon, 08 Jul 2013 16:06:12 +0200