spdep/ 0000755 0001762 0000144 00000000000 13152340741 011365 5 ustar ligges users spdep/inst/ 0000755 0001762 0000144 00000000000 13073127420 012341 5 ustar ligges users spdep/inst/CITATION 0000644 0001762 0000144 00000002756 12456023776 013525 0 ustar ligges users citHeader("To cite spdep in publications use:") citEntry(entry = "Article", title = "Comparing Implementations of Estimation Methods for Spatial Econometrics", author = personList(as.person("Roger Bivand"), as.person("Gianfranco Piras")), journal = "Journal of Statistical Software", year = "2015", volume = "63", number = "18", pages = "1--36", url = "http://www.jstatsoft.org/v63/i18/", textVersion = paste("Roger Bivand, Gianfranco Piras (2015).", "Comparing Implementations of Estimation Methods for Spatial Econometrics.", "Journal of Statistical Software, 63(18), 1-36.", "URL http://www.jstatsoft.org/v63/i18/.") ) citEntry(entry = "Article", title = "Computing the Jacobian in Gaussian spatial autoregressive models: An illustrated comparison of available methods", author = personList(as.person("Roger Bivand"), as.person("Jan Hauke"), as.person("Tomasz Kossowski")), journal = "Geographical Analysis", year = "2013", volume = "45", number = "2", pages = "150--179", url = "http://www.jstatsoft.org/v63/i18/", textVersion = paste("Bivand, R. S., Hauke, J., and Kossowski, T. (2013).", "Computing the Jacobian in Gaussian spatial autoregressive models:", "An illustrated comparison of available methods. Geographical", "Analysis, 45(2), 150-179.") ) spdep/inst/README 0000644 0001762 0000144 00000011031 12723257757 013237 0 ustar ligges users Spatial dependence: weighting schemes, statistics and models A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tesselations, for summarising these objects, and for permitting their use in spatial data analysis; a collection of tests for spatial autocorrelation, including global Moran's I, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and spatial Index, and Getis/Ord G, local Moran's I and Getis/Ord G, saddlepoint approximations for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, weighted and unweighted SAR and CAR spatial regression models, and GM SAR error models. This file is intended to clarify ownership and copyright: where possible individual files also carry brief copyright notices. Copyrights ========== Files: src/dnn.c and src/knearneigh.c are based on code taken from: class/class.c by W. N. Venables and B. D. Ripley Copyright (C) 1994-9 Files: src/dfs_comp.c, src/gabriel.c, src/relative.c, R/components.R, R/gabrielneigh.R, R/graph2nb.R, R/nboperations.R, R/relneigh.R, R/soi.R, man/compon.Rd, man/graphneigh.Rd, man/nboperations.Rd are copyright (c) 2001 by Nicholas Lewin-Koh and are subject to the licence at the foot of this file. File: R/lag.spsarlm.R is copyright (c) 1998-2002 by Roger Bivand and Andrew Bernat, and is subject to the licence at the foot of this file. File: R/globalG.R is copyright (c) 2002 by Hisaji ONO and Roger Bivand, and is subject to the licence at the foot of this file. Files: R/mtlocalmoran.R and R/mtmoran.R are copyright (c) 2002 by Roger Bivand and Michael Tiefelsdorf, and are subject to the licence at the foot of this file. File: R/EBI.R is copyright (c) 2003 by Roger Bivand and Marilio Carvalho, and is subject to the licence at the foot of this file. File: R/p.adjustSP.R is copyright (c) 2004 by Roger Bivand and Danlin Yu, and is subject to the licence at the foot of this file. File: R/autocov.R is copyright (c) 2005 by Carsten F. Dormann and Roger Bivand, and is subject to the licence at the foot of this file. File: R/kpgm_new.R is copyright (c) 2005 by Luc Anselin and Roger Bivand, and is subject to the licence at the foot of this file. File: R/SpatialFiltering.R is copyright (c) 2005 by Yongwan Chun, Michael Tiefelsdorf and Roger Bivand, and is subject to the licence at the foot of this file. Files: data/afcon.rda, data/columbus.rda, data/oldcon.rda, data/nc.sids.rda are derived by permission from SpaceStat data files prepared by Luc Anselin; they were downloaded from: http://www.spacestat.com/data.htm#data under the following conditions: "All data sets are provided as is, and no warranties, expressed or implied are made as to the correctness and fitness for a purpose. Proper citation of the source of the data in published work would be appreciated." File: data/eire.rda is derived from data sets made available by Michael Tiefelsdorf based on sources named in man/eire.Rd, and downloaded from: http://geog-www.sbs.ohio-state.edu/faculty/tiefelsdorf/GeoStat.htm File: data/auckland.rda is derived from data sets included with INFOMAP in Bailey T, Gatrell A (1995) Interactive Spatial Data Analysis, Harlow: Longman, and is used with permission of the authors. File: data/NY_data.rda is derived from data sets for Waller, L. and C. Gotway (2004) Applied Spatial Statistics for Public Health Data, New York: John Wiley and Sons, and is used with permission of the authors. Other files in the data directory are derived from sources given on their help pages. All other files are copyright (c) 1998-2005 Roger S. Bivand and are subject to the licence at the foot of this file. Licence ======= This is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA. The file COPYING in the R top-level directory is a copy of the "GNU General Public License". Roger.Bivand@nhh.no spdep/inst/ChangeLog 0000644 0001762 0000144 00000304364 13152260144 014124 0 ustar ligges users 2017-09-01 13:27 rsbivand * ChangeLog, inst/ChangeLog: tidy 2017-09-01 13:26 rsbivand * R/localG.R: add returned attribute to localG 2017-09-01 13:23 rsbivand * ChangeLog, inst/ChangeLog: tidy 2017-09-01 13:22 rsbivand * R/localG.R, man/localmoran.exact.Rd: add returned attribute to localG 2017-09-01 10:03 rsbivand * R/localG.R, man/localG.Rd: add returned attribute to localG 2017-08-30 19:51 rsbivand * R/localmoran.R, man/localmoran.Rd: add Sokal et al. 1998 to localmoran 2017-08-22 19:50 rsbivand * man/localG.Rd: tidy 2017-08-22 19:47 rsbivand * man/localmoran.exact.Rd, man/predict.sarlm.Rd: tidy 2017-08-18 17:24 rsbivand * DESCRIPTION, R/moran.exact.R, R/mtmoran.R: array/vector warnings 2017-07-05 08:29 rsbivand * DESCRIPTION, R/spBreg.R: spBreg_lag priors bugfix 2017-04-13 11:38 rsbivand * ChangeLog, inst/ChangeLog: tidy 2017-04-13 11:37 rsbivand * src/dnn.c: zero distance issue fix 2017-04-12 13:38 rsbivand * src/dnn.c: gcdist returned -nan for zero distance 2017-04-11 13:47 rsbivand * DESCRIPTION, R/kpgm_new.R, man/GMerrorsar.Rd: return GMerrorsar vcov 2017-04-11 12:47 rsbivand * DESCRIPTION, man/boston.Rd, man/lextrB.Rd, src/ml_sse.c, vignettes/nb_igraph.Rmd: unprotected SEXP; igraph arpack error 2017-02-23 11:41 rsbivand * ChangeLog, inst/ChangeLog: tidy 2017-02-23 11:37 rsbivand * DESCRIPTION, NAMESPACE: condition R 3.3 imports(, except=()) dependency 2017-02-20 13:22 rsbivand * ChangeLog, DESCRIPTION, inst/ChangeLog: tidy 2017-02-18 19:01 rsbivand * NAMESPACE: impacts for lagmess 2017-02-18 18:38 rsbivand * NAMESPACE: impacts for lagmess 2017-02-18 18:38 rsbivand * NAMESPACE, R/impacts.R, R/mess.R, man/impacts.sarlm.Rd, man/lagmess.Rd: impacts for lagmess 2017-02-16 17:44 rsbivand * DESCRIPTION, NAMESPACE, R/mess.R, man/lagmess.Rd: add expm to MESS 2017-02-15 13:14 rsbivand * ChangeLog, inst/ChangeLog: tidy 2017-02-15 13:13 rsbivand * ChangeLog, DESCRIPTION, R/nb2mat.R, man/invIrM.Rd: powerWeights bug fixed 2017-01-08 19:59 rsbivand * ChangeLog, inst/ChangeLog: tidy 2016-12-20 14:54 rsbivand * man/bhicv.Rd: tidy 2016-12-09 07:53 rsbivand * DESCRIPTION, src/dnn.c: gcdists bug fixed 2016-09-21 07:56 rsbivand * man/COL.OLD.Rd: tidy 2016-09-21 07:50 rsbivand * ChangeLog, inst/ChangeLog: tidy 2016-09-21 07:49 rsbivand * ChangeLog, inst/ChangeLog: tidy 2016-09-21 07:48 rsbivand * man/baltimore.Rd, man/columbus.Rd, man/nc.sids.Rd, man/read.gal.Rd, man/read.gwt2nb.Rd: tidy 2016-09-21 07:10 rsbivand * ChangeLog, inst/ChangeLog: tidy 2016-09-21 07:09 rsbivand * DESCRIPTION, R/error.spsarlm.R, man/errorsarlm.Rd: drop bug fix in lmSLX 2016-08-23 15:29 rsbivand * man/COL.OLD.Rd, man/baltimore.Rd, man/columbus.Rd, man/nc.sids.Rd, man/read.gal.Rd, man/read.gwt2nb.Rd: asu links to chicago 2016-08-23 12:52 rsbivand * DESCRIPTION, R/knearneigh.R, R/nb2blocknb.R: nb2blocknb and knearneigh fixes 2016-07-29 19:44 rsbivand * ChangeLog, inst/ChangeLog: tidy 2016-07-29 19:42 rsbivand * DESCRIPTION: tidy 2016-06-21 11:43 rsbivand * R/lm.LMtests.R: tidy 2016-06-20 11:27 rsbivand * DESCRIPTION, NAMESPACE, R/jacobian.R, R/lag.spsarlm.R, R/spBreg.R, data/elect80.rda, man/impacts.sarlm.Rd, man/lagsarlm.Rd: adding Bayesian lag model 2016-06-17 19:14 rsbivand * R/error.spsarlm.R, R/sarlm.R: add impacts and predict methods for SLX 2016-06-17 10:12 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R, R/impacts.R, man/errorsarlm.Rd, man/impacts.sarlm.Rd, man/predict.sarlm.Rd: add impacts and predict methods for SLX 2016-05-31 16:27 rsbivand * ChangeLog, inst/ChangeLog: tidy 2016-05-31 16:25 rsbivand * man/graphneigh.Rd, vignettes/nb.Rnw: remove questioned C code 2016-05-31 10:07 rsbivand * R/soi.R, src/init.c, src/spdep.h: remove questioned C code 2016-05-31 09:59 rsbivand * DESCRIPTION, R/knearneigh.R, R/soi.R, inst/README, man/graphneigh.Rd, src/soigraph.c: remove questioned C code 2016-04-12 09:22 rsbivand * ChangeLog, inst/ChangeLog: tidy 2016-04-12 09:13 rsbivand * DESCRIPTION, R/listw2sn.R, man/tri2nb.Rd: bug fix in sn2listw affecting tri2nb 2016-04-04 17:01 rsbivand * src/soigraph.c: add verbatim copyright to soigraph.c 2016-03-18 07:52 rsbivand * R/error.spsarlm.R, man/errorsarlm.Rd: SLX/SDEM impacts 2016-03-17 13:26 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R: SLX/SDEM impacts 2016-03-14 13:09 rsbivand * man/predict.sarlm.Rd: add weights in Hausman 2016-03-14 12:39 rsbivand * man/MCMCsamp.Rd: add weights in Hausman 2016-03-14 10:43 rsbivand * R/error.spsarlm.R: add weights in Hausman 2016-03-13 21:07 rsbivand * DESCRIPTION, R/error.hessian.R, R/error.spsarlm.R, R/mcmcsamp.R, R/spautolm.R, man/errorsarlm.Rd: add weights to errorsarlm 2016-02-22 10:14 rsbivand * DESCRIPTION, R/EBI.R, man/EBImoran.mc.Rd: change mean subtraction default in EBI 2016-02-11 19:48 rsbivand * R/impacts.R: add null check to tp in print.summary.lagImpact 2016-02-08 16:05 rsbivand * R/jacobian.R: tidy 2016-02-07 20:20 rsbivand * DESCRIPTION, NAMESPACE, R/impacts.R, man/impacts.sarlm.Rd: spBreg_lag working 2016-02-03 17:29 rsbivand * DESCRIPTION, R/jacobian.R, man/boston.Rd: tidy 2016-01-01 18:52 rsbivand * DESCRIPTION, R/sarlm.R, man/invIrM.Rd, man/predict.sarlm.Rd: Martin Gubri end of year edits 2015-12-22 09:54 rsbivand * DESCRIPTION: tidy 2015-12-21 17:35 rsbivand * ChangeLog, inst/ChangeLog, man/boston.Rd: tidy 2015-12-10 12:30 rsbivand * ChangeLog, man/localmoran.Rd, man/localmoran.sad.Rd, man/nb2blocknb.Rd: Morans I archaeology 2015-10-21 13:24 rsbivand * R/summary.spsarlm.R, man/lm.morantest.exact.Rd: tidy 2015-10-05 20:36 rsbivand * man/localmoran.sad.Rd: use Omega= argument in localmoran.sad 2015-09-17 13:21 rsbivand * R/sarlm.R: fix in predict.sarlm() 2015-09-15 10:14 rsbivand * DESCRIPTION: tidy 2015-09-13 17:00 rsbivand * DESCRIPTION, R/nb2mat.R, R/sarlm.R, man/invIrM.Rd, man/predict.sarlm.Rd: adding preliminary GSoC 2015 results 2015-09-05 14:55 rsbivand * DESCRIPTION, R/impacts.R: add sac to listw impacts 2015-08-26 22:18 gpiras * DESCRIPTION: fix description file 2015-06-28 21:40 rsbivand * DESCRIPTION, NAMESPACE: CRAN _R_CHECK_CODE_USAGE_WITH_ONLY_BASE_ATTACHED_=true NAMESPACE tidy 2015-05-21 07:32 rsbivand * R/error.spsarlm.R: fix index error in create_WX 2015-05-07 15:56 rsbivand * R/mcmcsamp.R: model.reponse as.is issue 2015-05-06 19:07 rsbivand * R/lm.morantest.R, R/moran.exact.R, R/mtlocalmoran.R, R/mtmoran.R: Moran's I to Moran I 2015-05-06 18:12 rsbivand * DESCRIPTION, R/geary.R, R/moran.R, man/dnearneigh.Rd, man/eire.Rd, man/house.Rd, man/knearneigh.Rd, man/lm.morantest.exact.Rd, man/lm.morantest.sad.Rd, man/localmoran.exact.Rd, man/localmoran.sad.Rd: further +ellps= corrections 2015-03-25 20:59 rsbivand * R/lag.spsarlm.R, R/sacsarlm.R: fix spam bug in sacsarlm 2015-03-24 08:40 rsbivand * DESCRIPTION, R/EBI.R, man/EBImoran.mc.Rd: EBI subtract mean 2015-03-17 13:12 rsbivand * man/eigenw.Rd: arpack bounds issue 2015-03-17 10:33 rsbivand * man/lextrB.Rd, vignettes/nb_igraph.Rmd: arpack bounds issue 2015-03-16 21:23 rsbivand * DESCRIPTION, R/lextrW.R: fix for no-neighbour lextrW 2015-03-16 07:43 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-03-16 07:42 rsbivand * DESCRIPTION, R/lextrB.R, R/lextrW.R: condition on R version for .lm.fit() 2015-03-15 13:34 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-03-13 10:12 rsbivand * R/lag.spsarlm.R, R/sacsarlm.R: alleviate tol.solve issue in *sarlm 2015-03-13 10:11 rsbivand * R/localmoran.exact.R, R/moran.exact.R: fix localmoran.exact two.sided 2015-03-12 15:29 rsbivand * R/lag.spsarlm.R, R/sacsarlm.R: adding divert to fdHess for lag and sac 2015-03-12 11:59 rsbivand * R/error.spsarlm.R, R/jacobian_setup.R, vignettes/CO69.Rnw: alleviate tol.solve issue in errorsarlm 2015-03-08 18:53 rsbivand * NAMESPACE, R/lextrB.R, R/lextrW.R, man/lextrB.Rd, src/eminmaxC.c, src/init.c, src/spdep.h: S style extreme eigenvalues 2015-03-06 12:32 rsbivand * R/lextrB.R, R/lextrW.R, data/oldcol.rda, man/COL.OLD.Rd, man/lextrB.Rd, man/lm.morantest.Rd, src/eminmaxC.c: disambiguate AREA in oldcol 2015-03-02 18:35 rsbivand * man/lextrB.Rd: adding extreme eigs for W 2015-03-01 19:51 rsbivand * DESCRIPTION, NAMESPACE, R/lextrB.R, R/lextrW.R, src/eminmaxC.c, src/init.c, src/spdep.h: adding extreme eigs for W 2015-02-17 21:06 rsbivand * NAMESPACE, R/lextrB.R, man/lextrB.Rd: checks on input weights 2015-02-17 10:22 rsbivand * R/lextrB.R: max mustBeB 2015-02-16 21:33 rsbivand * DESCRIPTION, NAMESPACE, R/lextrB.R, man/lextrB.Rd, src/eminmaxC.c, src/init.c, src/spdep.h: adding extreme eigenvalue code 2015-02-04 09:12 rsbivand * DESCRIPTION, NAMESPACE, man/COL.OLD.Rd, man/NY_data.Rd, man/baltimore.Rd, man/boston.Rd, man/columbus.Rd, man/eire.Rd, man/nc.sids.Rd, man/read.gal.Rd, man/read.gwt2nb.Rd, man/wheat.Rd: fix dead URLs 2015-01-27 13:11 rsbivand * vignettes/nb_igraph.Rmd: tidy 2015-01-27 09:00 rsbivand * R/autocov.R, man/autocov_dist.Rd: update autocov_dist to Bardos et al. (2015) 2015-01-25 19:31 rsbivand * R/utils.R: tidy 2015-01-25 18:14 rsbivand * vignettes/nb_igraph.Rmd: tidy 2015-01-20 10:39 rsbivand * man/graphneigh.Rd: gabrielneigh issue 2015-01-18 17:42 rsbivand * DESCRIPTION, vignettes/nb_igraph.Rmd: tidy 2015-01-18 14:21 rsbivand * DESCRIPTION, vignettes/nb_igraph.Rmd: Matrix all.equal problem 2015-01-16 14:20 rsbivand * inst/ChangeLog: tidy 2015-01-16 14:19 rsbivand * ChangeLog: tidy 2015-01-16 14:04 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-01-15 21:05 rsbivand * DESCRIPTION, R/AAA.R, R/spChkOption.R, R/utils.R, inst/CITATION, man/GMerrorsar.Rd, man/do_ldet.Rd, man/errorsarlm.Rd, man/gstsls.Rd, man/impacts.sarlm.Rd, man/lagsarlm.Rd, man/sacsarlm.Rd, man/set.spChkOption.Rd, man/stsls.Rd: add JSS 2015 reference 2015-01-07 11:41 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-01-07 11:39 rsbivand * DESCRIPTION, R/jacobian.R, man/errorsarlm.Rd: tidy 2015-01-07 09:55 rsbivand * man/eigenw.Rd, vignettes/nb_igraph.Rmd: shield igraph::arpack 2015-01-07 09:30 rsbivand * R/moran.R, man/moran.mc.Rd: moran.mc adjust.n= 2015-01-06 17:02 rsbivand * DESCRIPTION, R/jacobian.R, R/jacobian_setup.R, R/utils.R, man/errorsarlm.Rd, src/dnn.c, src/insiders.c, src/nbdists.c: spam update issues 2015-01-05 21:22 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-01-05 21:21 rsbivand * ChangeLog, DESCRIPTION: tidy 2015-01-05 21:19 rsbivand * man/errorsarlm.Rd: tidy 2015-01-05 13:20 rsbivand * man/errorsarlm.Rd, vignettes/nb_igraph.Rmd: try in Matrix_J donttest 2015-01-05 09:41 rsbivand * vignettes/nb_igraph.Rmd: tidy 2014-12-28 18:59 rsbivand * vignettes/nb_igraph.Rmd: igraph usage 2014-12-28 18:28 rsbivand * vignettes/nb_igraph.Rmd: igraph usage 2014-12-28 13:25 rsbivand * vignettes/nb_igraph.Rmd: igraph usage 2014-12-26 20:04 rsbivand * vignettes/nb_igraph.Rmd: igraph usage 2014-12-23 22:22 rsbivand * vignettes/nb_igraph.Rmd: igraph usage 2014-12-22 23:14 rsbivand * vignettes/nb_igraph.Rmd: igraph usage 2014-12-22 22:54 rsbivand * man/aple.mc.Rd, man/set.mcOption.Rd, man/skater.Rd, man/trW.Rd: fixed detectCores in examples 2014-12-22 17:32 rsbivand * R/globalG.R, man/globalG.test.Rd, vignettes/nb_igraph.Rmd: igraph vignette start 2014-12-19 21:17 rsbivand * R/eigenw.R, vignettes/nb_igraph.Rmd: igraph vignette start 2014-12-19 15:09 rsbivand * vignettes/nb_igraph.Rmd: tidy 2014-12-18 21:55 rsbivand * R/listw2sn.R, R/nb2mat.R, vignettes/nb_igraph.Rmd: igraph vignette start 2014-12-18 13:51 rsbivand * vignettes/nb_igraph.Rmd: igraph vignette start 2014-12-18 13:48 rsbivand * DESCRIPTION, R/jacobian.R, R/listw2Matrix.R, R/nb2mat.R, man/as_dgRMatrix_listw.Rd, vignettes/nb_igraph.Rmd: igraph vignette start 2014-12-16 20:37 rsbivand * vignettes/nb_igraph.Rmd: igraph vignette start 2014-12-16 20:35 rsbivand * DESCRIPTION, vignettes/nb_igraph.Rmd: igraph vignette start 2014-12-15 09:32 rsbivand * man/nblag.Rd: start introducing igraph 2014-12-12 23:18 rsbivand * DESCRIPTION, R/listw2Matrix.R, man/compon.Rd, man/eigenw.Rd: start introducing igraph 2014-12-09 16:45 rsbivand * R/listw2Matrix.R, man/as_dgRMatrix_listw.Rd, man/trW.Rd: coerce to CsparseMatrix 2014-12-08 13:13 rsbivand * DESCRIPTION, NAMESPACE, R/ME.R, R/aple.R, R/error.spsarlm.R, R/jacobian.R, R/kpgm_new.R, R/lee.test.R, R/listw2Matrix.R, R/mcmcsamp.R, R/mess.R, R/nb2listw.R, R/sarlm.R, R/spautolm.R, man/as_dgRMatrix_listw.Rd, man/eigenw.Rd, man/errorsarlm.Rd, man/gstsls.Rd, man/house.Rd, man/impacts.sarlm.Rd, man/invIrM.Rd, man/lagsarlm.Rd, man/mat2listw.Rd, man/sacsarlm.Rd, man/trW.Rd: coerce to CsparseMatrix 2014-12-02 23:01 rsbivand * R/edit.nb.R, R/nb2blocknb.R, R/spautolm.R, man/boston.Rd, man/edit.nb.Rd, man/house.Rd, man/impacts.sarlm.Rd, man/spautolm.Rd: dontrun tidy 2014-12-02 12:34 rsbivand * ChangeLog, inst/ChangeLog: tidt 2014-12-02 12:32 rsbivand * DESCRIPTION, R/globalG.R, R/read.gal.R, src/card.c, src/nbdists.c, vignettes/sids.Rnw: read.gal() not assigning 0 to nb object 2014-11-27 10:38 rsbivand * man/spautolm.Rd: spautolm docs 2014-11-21 08:43 rsbivand * DESCRIPTION, R/globalG.R, man/globalG.test.Rd: globalG two.sided 2014-11-06 13:43 rsbivand * DESCRIPTION, R/jacobian.R, R/knearneigh.R, R/listw2sn.R, R/nb2listw.R: formula and requireNamespace 2014-11-06 12:28 rsbivand * DESCRIPTION, R/SpatialFiltering.R, R/aple.mc.R, R/error.spsarlm.R, R/impacts.R, R/jacobian.R, R/knearneigh.R, R/kpgm_new.R, R/lag.spsarlm.R, R/listw2sn.R, R/mess.R, R/nb2listw.R, R/nbcosts.R, R/prunecost.R, R/s2sls.R, R/sacsarlm.R: formula and requireNamespace 2014-09-17 19:31 rsbivand * ChangeLog, inst/ChangeLog: tidy 2014-08-31 21:34 rsbivand * R/tri2nb.R: allow other bounds in dnn 2014-08-31 14:57 rsbivand * DESCRIPTION, R/dnearneigh.R, man/dnearneigh.Rd, man/summary.nb.Rd, src/dnn.c: allow other bounds in dnn 2014-07-30 15:14 rsbivand * R/bptest.sarlm.R, src/soigraph.c: Debian copyright issue 2014-07-18 12:23 rsbivand * DESCRIPTION, NAMESPACE, man/do_ldet.Rd, man/nb2listw.Rd: exporting can.be.simmed and jacobianSetup 2014-06-05 19:08 rsbivand * ChangeLog, inst/ChangeLog: tidy 2014-06-05 18:59 rsbivand * DESCRIPTION, man/nb2listw.Rd: tidy 2014-05-15 10:39 rsbivand * R/impacts.R, man/impacts.sarlm.Rd: slacken row-standardised condition on listw impacts 2014-04-19 16:54 rsbivand * DESCRIPTION, NAMESPACE, R/lee.R, R/lee.mc.R, R/lee.test.R, R/lee_internal.R, man/lee.Rd, man/lee.mc.Rd, man/lee.test.Rd: adding Lee test 2014-04-03 18:25 rsbivand * ChangeLog, DESCRIPTION, NAMESPACE, R/error.spsarlm.R, R/lag.spsarlm.R, R/sacsarlm.R, man/errorsarlm.Rd: exposing create_WX 2014-03-21 12:49 rsbivand * DESCRIPTION, R/dnearneigh.R, man/dnearneigh.Rd: logic bug in dnearneighbour 2014-03-19 07:56 rsbivand * DESCRIPTION, man/errorsarlm.Rd, man/lagsarlm.Rd, man/sacsarlm.Rd: sarlm help pages links 2014-03-05 09:26 rsbivand * DESCRIPTION, R/impacts.R, man/impacts.sarlm.Rd: fix holes in listw route to impacts 2014-03-04 14:41 rsbivand * DESCRIPTION, R/impacts.R, R/nb2mat.R: fix holes in listw route to impacts 2014-01-31 14:08 rsbivand * ChangeLog, inst/ChangeLog: tidy 2014-01-31 14:07 rsbivand * man/EBImoran.mc.Rd, man/bptest.sarlm.Rd, man/eire.Rd: now UTF-8 2014-01-31 12:34 rsbivand * ChangeLog, inst/ChangeLog: tidy 2014-01-31 12:33 rsbivand * DESCRIPTION, NAMESPACE, man/EBImoran.mc.Rd, man/bptest.sarlm.Rd, man/eire.Rd: all to UTF-8 2014-01-31 09:40 rsbivand * ChangeLog, inst/ChangeLog: tidy 2014-01-31 09:39 rsbivand * man/boston.Rd: decription of Boston tracts 2014-01-31 09:30 rsbivand * ChangeLog, inst/ChangeLog: tidy 2014-01-31 09:28 rsbivand * man/boston.Rd: decription of Boston tracts 2014-01-30 20:16 rsbivand * inst/ChangeLog: tidy 2014-01-30 20:15 rsbivand * ChangeLog: tidy 2014-01-30 20:12 rsbivand * DESCRIPTION, inst/etc/shapes/boston_tracts.dbf, inst/etc/shapes/boston_tracts.prj, inst/etc/shapes/boston_tracts.shp, inst/etc/shapes/boston_tracts.shx, man/boston.Rd: adding boston tract polygons 2014-01-17 12:48 rsbivand * DESCRIPTION, R/knearneigh.R, man/knearneigh.Rd: duplicate points in knearneigh 2014-01-13 10:38 rsbivand * data/wheat.rda, data/wheat.txt, inst/etc/shapes/wheat.dbf, man/wheat.Rd: bug in wheat data 2013-12-04 21:33 rsbivand * DESCRIPTION, R/nb2blocknb.R, man/nb2blocknb.Rd: NULL nb in nb2blocknb 2013-11-05 10:43 rsbivand * DESCRIPTION, R/spautolm.R: fix non-fdHess se in spautolm 2013-10-29 18:13 rsbivand * DESCRIPTION: socket cluster for skater 2013-10-29 18:10 rsbivand * ChangeLog, inst/ChangeLog: socket cluster for skater 2013-10-29 18:09 rsbivand * DESCRIPTION, R/nbcosts.R, R/prunecost.R: socket cluster for skater 2013-10-27 10:21 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-10-27 10:19 rsbivand * NAMESPACE, man/impacts.sarlm.Rd: adding intImpacts to namespace 2013-10-22 06:13 rsbivand * DESCRIPTION, R/error.spsarlm.R, man/errorsarlm.Rd: fix lmSLX bug 2013-10-20 07:41 rsbivand * R/nbcosts.R, R/prunecost.R, man/nbcosts.Rd, man/skater.Rd: mc options 2013-10-18 16:30 rsbivand * R/impacts.R, man/trW.Rd: mc options 2013-10-18 06:43 rsbivand * R/spChkOption.R, man/set.mcOption.Rd: mc options 2013-10-17 21:22 rsbivand * NAMESPACE, R/EBI.R, R/ME.R, R/aple.mc.R, R/geary.R, R/moran.R, R/sp.mantel.R, R/spChkOption.R, man/set.mcOption.Rd: mc options 2013-10-17 20:21 rsbivand * DESCRIPTION, R/aple.mc.R, R/spChkOption.R, man/aple.Rd, man/aple.mc.Rd, man/set.mcOption.Rd: mc options 2013-10-17 12:10 rsbivand * R/AAA.R, R/spChkOption.R, man/set.mcOption.Rd: mc options 2013-10-01 18:32 rsbivand * R/error.spsarlm.R: series approximation issue 2013-10-01 11:01 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/nb2mat.R, man/invIrM.Rd: series approximation issue 2013-09-20 16:40 rsbivand * man/set.mcOption.Rd: progress on parallel integration 2013-09-20 10:43 rsbivand * DESCRIPTION, NAMESPACE, R/AAA.R, R/aple.mc.R, R/spChkOption.R, man/aple.mc.Rd, man/set.spChkOption.Rd: progress on parallel integration 2013-09-17 08:13 rsbivand * R/nbcosts.R, R/prunecost.R: crossplatform skater functions 2013-09-16 08:40 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-09-16 08:39 rsbivand * man/droplinks.Rd, man/errorsarlm.Rd: tidy 2013-09-16 08:26 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-09-13 09:04 rsbivand * R/knearneigh.R: fix RANN zero-distance bug 2013-09-04 13:44 rsbivand * R/error.spsarlm.R, man/errorsarlm.Rd: adding SLX as lmSLX 2013-09-04 13:03 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R, man/errorsarlm.Rd: adding SLX as lmSLX 2013-09-02 08:40 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-09-02 08:39 rsbivand * R/AAA.R, R/nbcosts.R, R/prunecost.R: block windows mc.cores > 1 (temp fix) 2013-09-02 08:07 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-09-02 08:06 rsbivand * DESCRIPTION, R/AAA.R, R/nbcosts.R, R/prunecost.R: block windows mc.cores > 1 (temp fix) 2013-09-01 18:30 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-08-29 13:02 rsbivand * DESCRIPTION, NAMESPACE, R/autocov.R, R/dnearneigh.R, R/edit.nb.R, R/impacts.R, R/knearneigh.R, R/nbdists.R, R/poly2nb.R, R/summary.nb.R, man/edit.nb.Rd, man/poly2nb.Rd, man/trW.Rd, vignettes/nb.Rnw: remove ::: 2013-08-28 13:43 rsbivand * DESCRIPTION, NAMESPACE, R/aple.mc.R, R/spautolm.R, man/moran.plot.Rd: tidy 2013-08-28 11:33 rsbivand * .Rbuildignore, DESCRIPTION, man/getisord.Rd, man/lm.morantest.Rd, man/moran.mc.Rd: tidy 2013-08-21 10:49 rsbivand * DESCRIPTION, R/nbcosts.R, R/prunecost.R, data/wheat.txt, man/wheat.Rd: wheat bug, prunecost/nbcosts 2013-08-07 13:19 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-08-07 13:16 rsbivand * DESCRIPTION: tidy 2013-07-26 20:34 rsbivand * DESCRIPTION, NAMESPACE, R/jacobian.R, R/tri2nb.R, man/NY_data.Rd, man/auckland.Rd, man/columbus.Rd, man/eire.Rd, man/lm.morantest.exact.Rd, man/lm.morantest.sad.Rd, man/localmoran.exact.Rd, man/localmoran.sad.Rd, man/mstree.Rd, man/nb2lines.Rd, man/nc.sids.Rd, man/skater.Rd, man/wheat.Rd, vignettes/CO69.Rnw: reduce Depends 2013-07-22 07:14 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-07-22 07:13 rsbivand * DESCRIPTION, R/knearneigh.R, man/knearneigh.Rd: RANN nn -> nn2 2013-07-02 19:04 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-07-02 19:03 rsbivand * inst/LICENCE, inst/README: tidy 2013-07-02 18:31 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-07-02 18:30 rsbivand * DESCRIPTION, inst/doc/CO69.Rnw, inst/doc/CO69.pdf, inst/doc/SpatialFiltering.Rnw, inst/doc/SpatialFiltering.pdf, inst/doc/nb.Rnw, inst/doc/nb.pdf, inst/doc/sids.Rnw, inst/doc/sids.pdf, vignettes, vignettes/CO69.Rnw, vignettes/CO69.pdf, vignettes/SpatialFiltering.Rnw, vignettes/SpatialFiltering.pdf, vignettes/nb.Rnw, vignettes/nb.pdf, vignettes/sids.Rnw, vignettes/sids.pdf: move to vignettes 2013-06-25 17:30 rsbivand * inst/doc/SpatialFiltering.Rnw, inst/doc/SpatialFiltering.pdf, inst/doc/nb.Rnw, inst/doc/nb.pdf: adding footnote 2013-06-24 11:57 rsbivand * DESCRIPTION, R/plot.nb.R, inst/doc/SpatialFiltering.Rnw: plot.nb 2013-06-21 13:44 rsbivand * DESCRIPTION, inst/doc/SpatialFiltering.Rnw, inst/doc/backstore/nyME_res.RData: backstoring ME results 2013-06-21 12:08 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-06-21 12:07 rsbivand * man/impacts.sarlm.Rd, man/lagmess.Rd, man/lm.morantest.exact.Rd, man/localmoran.exact.Rd, man/spautolm.Rd, man/tolerance.nb.Rd, man/trW.Rd: changing over-long help page lines 2013-06-20 17:07 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-06-20 17:02 rsbivand * DESCRIPTION, inst/doc/SpatialFiltering.Rnw, inst/doc/SpatialFiltering.pdf, inst/doc/nb.Rnw, inst/doc/nb.pdf: SpatialFiltering vignette 2013-06-20 11:41 rsbivand * DESCRIPTION, R/mcmcsamp.R, inst/doc/nb.Rnw, inst/etc/shapes/NY8_utm18.dbf, inst/etc/shapes/NY8_utm18.prj, inst/etc/shapes/NY8_utm18.shp, inst/etc/shapes/NY8_utm18.shx, inst/etc/weights/NY_nb.gal, man/MCMCsamp.Rd: nb vignette beginning 2013-03-30 13:23 rsbivand * LICENCE, src/dnn.c, src/ml_sse.c, src/polypoly.c, src/skater.c: remove clang warnings 2013-03-14 16:36 rsbivand * inst/doc/CO69.Rnw, inst/doc/sids.Rnw: keep.source=FALSE in vignettes 2013-02-11 07:39 rsbivand * DESCRIPTION, R/error.spsarlm.R, src/ml_sse.c, src/spdep.h: tidy 2013-01-11 11:13 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-01-11 11:11 rsbivand * DESCRIPTION, R/error.hessian.R, R/error.spsarlm.R, R/impacts.R, R/lag.hessian.R, R/lag.spsarlm.R, R/moran.exact.R, R/spautolm.R, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: no real and Hessian variants 2012-12-21 09:25 rsbivand * ChangeLog, inst/ChangeLog: tidy 2012-12-21 09:24 rsbivand * R/impacts.R, R/poly2nb.R: clusterExport environment 2012-12-20 12:42 rsbivand * ChangeLog, inst/ChangeLog: pre_eig documentation 2012-12-20 12:40 rsbivand * R/sacsarlm.R, man/errorsarlm.Rd, man/lagsarlm.Rd, man/sacsarlm.Rd, man/spautolm.Rd: pre_eig documentation 2012-12-11 11:46 rsbivand * DESCRIPTION, NAMESPACE, R/eigenw.R, R/error.spsarlm.R, R/jacobian.R, R/jacobian_setup.R, R/lag.spsarlm.R, R/sacsarlm.R, R/spautolm.R, man/do_ldet.Rd, man/eigenw.Rd: adding direct eigenvalues to fitting functions 2012-12-08 17:53 rsbivand * man/aple.Rd, man/aple.mc.Rd, man/aple.plot.Rd: changing to published APLE reference 2012-11-18 19:51 rsbivand * DESCRIPTION, R/error.hessian.R, R/lag.hessian.R, R/spautolm.R: Hessian optim > optimHess 2012-11-09 10:12 rsbivand * ChangeLog, inst/ChangeLog: tidy 2012-11-09 10:11 rsbivand * DESCRIPTION, NAMESPACE, R/mcmcsamp.R, man/MCMCsamp.Rd, man/lagsarlm.Rd: replace MCMCpack with LearnBayes 2012-11-08 20:28 rsbivand * ChangeLog, inst/ChangeLog: tidy 2012-11-08 20:26 rsbivand * NAMESPACE, R/error.hessian.R, R/error.spsarlm.R, R/lag.hessian.R, R/lag.spsarlm.R, R/mcmcsamp.R, R/sacsarlm.R, man/MCMCsamp.Rd, man/errorsarlm.Rd: adding MCMCsamp method for sarlm 2012-11-08 17:16 rsbivand * R/mcmcsamp.R, R/spautolm.R, man/MCMCsamp.Rd, man/spautolm.Rd: adding MCMCsamp method for spautolm 2012-11-08 11:05 rsbivand * man/spautolm.Rd: add fdHess lambda.se to spautolm 2012-11-08 10:49 rsbivand * R/spautolm.R: add fdHess lambda.se to spautolm 2012-11-07 20:29 rsbivand * DESCRIPTION, NAMESPACE, R/jacobian_setup.R, R/lag.spsarlm.R, R/mcmcsamp.R, R/sacsarlm.R, R/spautolm.R, man/GMerrorsar.Rd, man/sacsarlm.Rd, man/spautolm.Rd: code simplification for Jacobian 2012-11-07 07:04 rsbivand * R/error.spsarlm.R, R/jacobian.R, R/jacobian_setup.R, R/mcmcsamp.R, R/sp.correlogram.R, man/sp.correlogram.Rd: code simplification for Jacobian 2012-10-18 18:58 rsbivand * R/jacobian.R: eq7 moments 2012-10-04 03:00 rsbivand * DESCRIPTION, R/cyclical.R, R/jacobian.R, R/weights-utils.R, man/do_ldet.Rd: adding cyclical computation 2012-10-03 10:06 rsbivand * R/weights-utils.R: find cyclical weights 2012-10-03 09:59 rsbivand * R/weights-utils.R: find cyclical weights 2012-10-03 09:54 rsbivand * R/weights-utils.R: find cyclical weights 2012-09-25 09:09 rsbivand * ChangeLog, DESCRIPTION, inst/ChangeLog: tidy 2012-09-23 14:51 rsbivand * NAMESPACE, R/jacobian.R, man/do_ldet.Rd: add LU pre-permute ldet 2012-09-22 19:12 rsbivand * R/jacobian.R, man/do_ldet.Rd: add LU pre-permute ldet 2012-09-22 18:51 rsbivand * DESCRIPTION, NAMESPACE, R/jacobian.R, man/do_ldet.Rd: add LU pre-permute ldet 2012-09-12 20:21 rsbivand * DESCRIPTION, R/jacobian.R: m+1 in Rmrho 2012-08-31 12:15 rsbivand * ChangeLog, inst/ChangeLog: tidy 2012-08-31 12:14 rsbivand * ChangeLog, inst/ChangeLog: tidy 2012-08-31 12:13 rsbivand * DESCRIPTION, R/ME.R, man/ME.Rd: remove EISPACK, enforce symmetry in ME 2012-08-27 19:11 rsbivand * man/errorsarlm.Rd, man/lagsarlm.Rd: further SE classic additions, error model 2012-08-27 18:54 rsbivand * R/error.spsarlm.R: further SE classic additions, error model 2012-08-27 18:52 rsbivand * R/error.hessian.R, R/error.spsarlm.R, R/lag.hessian.R, R/lag.spsarlm.R: further SE classic additions, error model 2012-08-27 14:58 rsbivand * R/jacobian.R, R/lag.spsarlm.R, man/do_ldet.Rd: further SE classic additions 2012-08-27 07:24 rsbivand * DESCRIPTION, NAMESPACE, R/jacobian.R, R/lag.spsarlm.R, man/do_ldet.Rd, man/lagsarlm.Rd: SE_* do_ldet methods to emulate SE toolbox 2012-08-15 09:00 rsbivand * R/spautolm.R, R/subset.nb.R: NROW bug in spautolm 2012-07-11 14:58 rsbivand * DESCRIPTION, R/s2sls.R, R/spautolm.R: correct White HC in stsls 2012-05-23 20:11 rsbivand * man/impacts.sarlm.Rd: revised impacts help page 2012-05-21 10:46 rsbivand * R/read.gwt2nb.R: integer in read.dat2listw 2012-05-18 11:59 rsbivand * DESCRIPTION, R/sacsarlm.R, man/sacsarlm.Rd: limit sacsar fdHess to nlme 2012-05-17 07:46 rsbivand * R/skater.R, man/skater.Rd: skater updated 2012-05-11 17:59 rsbivand * R/summary.spsarlm.R: adding adj.se to summary.sarlm 2012-05-11 17:52 rsbivand * R/summary.spsarlm.R: adding adj.se to summary.sarlm 2012-05-11 17:40 rsbivand * DESCRIPTION, R/summary.spsarlm.R, man/summary.sarlm.Rd: adding adj.se to summary.sarlm 2012-05-06 15:06 rsbivand * ChangeLog, inst/ChangeLog: tidy 2012-05-06 15:04 rsbivand * DESCRIPTION, R/aple.mc.R, R/impacts.R, R/poly2nb.R, man/aple.mc.Rd, man/set.spChkOption.Rd: shift to parallel 2012-05-02 11:23 rsbivand * man/nb2lines.Rd, man/nb2listw.Rd: minmax in nb2listw help page 2012-04-09 15:13 rsbivand * R/summary.nb.R: clearer messages in listw summary 2012-04-07 13:20 rsbivand * R/localmoran.R: add rownames to localmoran 2012-04-05 10:59 rsbivand * R/moran.R: warnings in moran.test 2012-03-31 08:34 rsbivand * NAMESPACE, R/lm.LMtests.R, R/sarlm.R, man/lm.LMtests.Rd, man/predict.sarlm.Rd: summary for LM tests, as.data.frame for sarlm predictions 2012-03-21 19:23 rsbivand * DESCRIPTION, R/sarlm.R: added non-W intercept handling to predict.sarlm 2012-03-17 19:34 rsbivand * ChangeLog, inst/ChangeLog: tidy 2012-03-17 19:30 rsbivand * ChangeLog, R/error.spsarlm.R, R/sarlm.R, man/predict.sarlm.Rd: add emixed to predict 2012-03-16 07:08 rsbivand * R/impacts.R, R/sarlm.R, man/predict.sarlm.Rd: return samples from impacts; use samples in predict 2012-03-15 06:55 rsbivand * DESCRIPTION, R/sarlm.R: alias fix in predict.sarlm 2012-02-24 20:53 rsbivand * DESCRIPTION, R/bptest.sarlm.R, man/bptest.sarlm.Rd: df bug in bptest 2011-12-05 12:51 rsbivand * man/impacts.sarlm.Rd: remove limitation on impacts help page 2011-11-26 11:52 rsbivand * ChangeLog, inst/ChangeLog: add sd to MC tr 2011-11-26 11:51 rsbivand * ChangeLog, DESCRIPTION, R/impacts.R, man/do_ldet.Rd, man/trW.Rd: add sd to MC tr 2011-11-20 17:02 rsbivand * R/jacobian.R: returning number of corrections used in truncated moments 2011-11-19 09:51 rsbivand * DESCRIPTION, R/impacts.R, man/trW.Rd: relax symmetry assertion in moments tr 2011-11-14 21:15 rsbivand * DESCRIPTION, R/AAA.R, R/EBI.R, R/ME.R, R/SpatialFiltering.R, R/aple.mc.R, R/autocov.R, R/diffnb.R, R/eigenw.R, R/error.spsarlm.R, R/geary.R, R/globalG.R, R/impacts.R, R/jc.R, R/kpgm_new.R, R/lag.spsarlm.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/localmoran.exact.R, R/mess.R, R/moran.R, R/moran.exact.R, R/moran.exact.alt.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/poly2nb.R, R/s2sls.R, R/sacsarlm.R, R/sarlm.R, R/sp.correlogram.R, R/sp.mantel.R, R/spChkOption.R, R/spautolm.R, R/subset.nb.R, R/summary.nb.R, R/summary.spsarlm.R, R/utils.R, R/weights-utils.R: complete partial argument matches 2011-11-14 10:32 rsbivand * ChangeLog, inst/ChangeLog: tidy 2011-11-10 14:45 rsbivand * R/jacobian.R: MC adjustments 2011-11-10 12:58 rsbivand * DESCRIPTION, R/jacobian.R: MC adjustments 2011-11-08 09:34 rsbivand * DESCRIPTION, R/jacobian.R: asy moments 2011-10-07 18:28 rsbivand * DESCRIPTION, R/read.gwt2nb.R: no-neighbours in nb2INLA 2011-10-06 16:01 rsbivand * man/do_ldet.Rd: tidy 2011-09-16 08:33 rsbivand * ChangeLog, inst/ChangeLog: tidy 2011-09-16 08:30 rsbivand * DESCRIPTION, R/AAA.R, man/LR.sarlm.Rd, man/anova.sarlm.Rd, man/edit.nb.Rd, man/graphneigh.Rd, man/joincount.multi.Rd, man/joincount.test.Rd, man/lag.listw.Rd, man/lm.LMtests.Rd, man/lm.morantest.sad.Rd, man/localmoran.sad.Rd, man/plot.nb.Rd, man/predict.sarlm.Rd, man/residuals.sarlm.Rd, man/sp.correlogram.Rd, man/sp.mantel.mc.Rd, man/subset.listw.Rd, man/subset.nb.Rd, man/summary.nb.Rd, man/trW.Rd: help file S3 cleanup 2011-07-18 19:11 rsbivand * R/kpgm_new.R: pass zero.policy in GMerrorsar non-legacy branch 2011-07-17 12:18 rsbivand * DESCRIPTION, R/EBI.R, R/aple.R, R/autocov.R, R/geary.R, R/globalG.R, R/localG.R, R/localmoran.R, R/moran.plot.R, R/sp.correlogram.R, R/sp.mantel.R, man/aple.Rd, man/aple.mc.Rd, man/aple.plot.Rd, man/moran.plot.Rd: enforce vector input for tests 2011-07-03 18:20 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R, R/lag.spsarlm.R, R/sarlm.R, man/residuals.sarlm.Rd: first sketch of sarlm vcov 2011-06-29 08:03 rsbivand * ChangeLog, inst/ChangeLog: tidy 2011-06-29 08:01 rsbivand * DESCRIPTION: tidy 2011-06-29 07:45 rsbivand * ChangeLog, inst/ChangeLog: tidy 2011-06-29 07:44 rsbivand * ChangeLog, R/sarlm.R, inst/ChangeLog: tidy 2011-06-17 12:30 rsbivand * R/summary.spsarlm.R: adding LM test to SD summary 2011-06-16 10:47 rsbivand * R/aple.mc.R, R/bptest.sarlm.R, R/error.spsarlm.R, R/lag.spsarlm.R, R/sacsarlm.R, R/sarlm.R, R/summary.spsarlm.R, man/bptest.sarlm.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/localmoran.exact.Rd, man/localmoran.sad.Rd, man/sacsarlm.Rd: continuing object bloat reduction 2011-06-15 19:54 rsbivand * DESCRIPTION, R/anova.sarlm.R, R/error.spsarlm.R, R/lag.spsarlm.R, R/sacsarlm.R, R/sarlm.R, R/spautolm.R, R/summary.spsarlm.R: incomplete slimming environments 2011-06-12 19:11 rsbivand * R/aple.R: aple tidy 2011-06-09 15:45 rsbivand * ChangeLog, inst/ChangeLog: tidy 2011-06-09 15:42 rsbivand * DESCRIPTION, R/impacts.R, R/kpgm_new.R, R/s2sls.R, man/stsls.Rd: SEAI modifications 2011-06-01 05:28 rsbivand * man/rotation.Rd: change rotation example output 2011-06-01 05:14 rsbivand * R/nbcosts.R, R/prunecost.R, R/skater.R, man/nbcosts.Rd, man/prunecost.Rd, man/skater.Rd, man/ssw.Rd: update to skater from Elias T. Krainski 2011-05-30 08:07 rsbivand * NAMESPACE, R/impacts.R, R/kpgm_new.R, man/gstsls.Rd, man/impacts.sarlm.Rd: impacts method for gmsar/SARAR 2011-05-28 15:17 rsbivand * R/kpgm_new.R, man/GMerrorsar.Rd, man/gstsls.Rd: scaleU in GMerrorsar and gstsls 2011-05-27 21:55 rsbivand * DESCRIPTION, R/nb2listw.R, man/nb2listw.Rd: examining minmax in nb2listw 2011-05-19 21:55 rsbivand * ChangeLog, inst/ChangeLog: integer overflow in poly2nb C code 2011-05-19 21:52 rsbivand * DESCRIPTION, src/polypoly.c: integer overflow in poly2nb C code 2011-05-05 18:00 rsbivand * ChangeLog, inst/ChangeLog, inst/doc/CO69.pdf, inst/doc/sids.pdf: tidy 2011-05-05 16:22 rsbivand * R/kpgm_new.R, man/GMerrorsar.Rd: GMerrorsar se lambda 2011-05-04 20:06 rsbivand * R/kpgm_new.R, man/GMerrorsar.Rd: GM lambda standard error incomplete 2011-05-03 20:39 rsbivand * DESCRIPTION, NAMESPACE, R/kpgm_new.R, man/GMerrorsar.Rd, man/gstsls.Rd: GM lambda standard error incomplete 2011-04-16 12:24 rsbivand * R/kpgm_new.R: tidy 2011-04-16 12:16 rsbivand * R/kpgm_new.R: tidy 2011-04-16 11:42 rsbivand * R/kpgm_new.R: Arnold-Wied (2010) moments 2011-04-14 20:16 rsbivand * DESCRIPTION, R/eigenw.R, R/jacobian.R, R/kpgm_new.R, man/GMerrorsar.Rd, man/eigenw.Rd, man/gstsls.Rd: complex eigenvalues 2011-04-13 09:53 rsbivand * inst/doc/CO69.pdf, inst/doc/sids.pdf, man/eigenw.Rd: complex eigenvalues 2011-04-12 15:06 rsbivand * ChangeLog, inst/ChangeLog: fixes for geary.mc and GMerrorsar 2011-04-12 15:05 rsbivand * DESCRIPTION, R/geary.R, R/kpgm_new.R, man/GMerrorsar.Rd, man/card.Rd, man/cell2nb.Rd, man/dnearneigh.Rd, man/geary.mc.Rd, man/graphneigh.Rd, man/knn2nb.Rd, man/nb2INLA.Rd, man/poly2nb.Rd: fixes for geary.mc and GMerrorsar 2011-03-30 18:51 rsbivand * DESCRIPTION, NAMESPACE, R/EBI.R, R/read.gwt2nb.R, man/nb2INLA.Rd: adding INLA nb interface 2011-03-14 09:25 rsbivand * ChangeLog, inst/ChangeLog: compressing PDFs and data 2011-03-14 09:24 rsbivand * data/NY_data.rda, data/afcon.rda, data/auckland.rda, data/baltimore.rda, data/boston.rda, data/columbus.rda, data/eire.rda, data/elect80.rda, data/getisord.rda, data/hopkins.rda, data/house.RData, data/huddersfield.rda, data/nc.sids.rda, data/oldcol.rda, data/used.cars.rda, inst/doc/CO69.pdf, inst/doc/sids.pdf: compressing PDFs and data 2011-03-14 07:50 rsbivand * data/00Index: removing data/00Index 2011-03-13 13:23 rsbivand * ChangeLog, inst/ChangeLog: revise vignettes (thanks to Edzer Pebesma) 2011-03-13 13:22 rsbivand * inst/doc/CO69.Rnw, inst/doc/sids.Rnw: revise vignettes (thanks to Edzer Pebesma) 2011-03-13 12:56 rsbivand * ChangeLog, inst/ChangeLog: hypot for pythag in C code 2011-03-13 12:54 rsbivand * DESCRIPTION, src/dnn.c, src/gabriel.c, src/knn.c, src/nbdists.c, src/polypoly.c, src/relative.c, src/soigraph.c: hypot for pythag in C code 2011-03-06 18:51 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/jacobian.R, R/lag.spsarlm.R, man/do_ldet.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd: adding moments to lag and error 2011-02-24 16:04 rsbivand * R/EBI.R, R/anova.sarlm.R, R/aple.mc.R, R/diffnb.R, R/droplinks.R, R/edit.nb.R, R/error.hessian.R, R/error.spsarlm.R, R/geary.R, R/graph2nb.R, R/impacts.R, R/jacobian.R, R/kpgm_new.R, R/lag.hessian.R, R/lag.spsarlm.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localmoran.exact.R, R/moran.R, R/moran.exact.R, R/moran.exact.alt.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2mat.R, R/nblag.R, R/nboperations.R, R/plot.skater.R, R/poly2nb.R, R/read.gal.R, R/read.gwt2nb.R, R/s2sls.R, R/sacsarlm.R, R/skater.R, R/sp.mantel.R, R/spChkOption.R, R/spautolm.R, R/subset.nb.R, R/summary.nb.R, R/summary.spsarlm.R, R/utils.R, R/weights-utils.R: making length comparisons literal integers 2011-01-24 08:46 rsbivand * man/geary.test.Rd: geary.test standard deviate help page 2010-12-21 16:24 rsbivand * R/sp.correlogram.R: adding Geary C to sp.correlogram 2010-12-21 16:22 rsbivand * DESCRIPTION, R/nbcosts.R, R/sp.correlogram.R, man/sp.correlogram.Rd: adding Geary C to sp.correlogram 2010-12-19 19:32 rsbivand * R/error.spsarlm.R, R/lag.spsarlm.R, R/spautolm.R, R/summary.spsarlm.R: warnings when rho/lambda at limit 2010-12-14 20:29 rsbivand * R/s2sls.R: stsls using QR 2010-11-30 22:02 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/impacts.R, R/sacsarlm.R, R/summary.spsarlm.R, man/errorsarlm.Rd, man/lagsarlm.Rd, man/sacsarlm.Rd: Elhorst 2010 paper trials 2010-11-25 08:13 rsbivand * R/lm.morantest.R: as.double N in lm.morantest 2010-11-24 15:14 rsbivand * R/lm.morantest.R: as.double N in lm.morantest 2010-11-24 14:43 rsbivand * DESCRIPTION, R/sacsarlm.R, src/dnn.c, src/knn.c, src/nbdists.c: CheckUserInterrupt in distance C code 2010-11-18 07:52 rsbivand * .Rbuildignore: add .Rbuildignore 2010-11-17 20:40 rsbivand * R/impacts.R, man/trW.Rd, src/mom_calc.c: moment calculations 2010-11-17 19:07 rsbivand * R/impacts.R, R/spChkOption.R, man/trW.Rd, src/mom_calc.c, src/spdep.h: moment calculations 2010-11-17 13:37 rsbivand * R/aple.mc.R, R/impacts.R: moment calculations 2010-11-16 21:37 rsbivand * R/impacts.R, man/trW.Rd: moment calculations 2010-11-16 12:45 rsbivand * R/impacts.R, src/mom_calc.c: moments calculation 2010-11-15 20:39 rsbivand * R/impacts.R, src/init.c, src/mom_calc.c, src/spdep.h: moment calculations 2010-11-11 11:31 rsbivand * INDEX: tidy 2010-11-10 17:55 rsbivand * ChangeLog, inst/ChangeLog: impacts summary fix; added tolerance.nb 2010-11-10 17:54 rsbivand * R/rotation.R, R/tolerance.nb.R, man/rotation.Rd, man/tolerance.nb.Rd: impacts summary fix; added tolerance.nb 2010-11-10 17:37 rsbivand * DESCRIPTION, NAMESPACE, R/impacts.R, man/mat2listw.Rd: impacts summary fix; added tolerance.nb 2010-11-02 11:20 rsbivand * R/nb2mat.R: added sparseMatrix to mat2listw 2010-10-31 19:57 rsbivand * DESCRIPTION, R/nb2mat.R, R/summary.nb.R, man/mat2listw.Rd: added sparseMatrix to mat2listw 2010-10-30 13:35 rsbivand * R/nb2mat.R, man/mat2listw.Rd: added style argement to mat2listw 2010-10-08 17:45 rsbivand * ChangeLog, inst/ChangeLog: sacsarlm optimizers 2010-10-08 12:18 rsbivand * DESCRIPTION, NAMESPACE, R/kpgm_new.R, man/GMerrorsar.Rd, man/gstsls.Rd, man/similar.listw.Rd: GM argmin image 2010-10-07 19:55 rsbivand * man/sacsarlm.Rd: sacsarlm optimizers 2010-10-07 19:01 rsbivand * R/sacsarlm.R, man/sacsarlm.Rd: sacsarlm optimizers 2010-10-06 18:51 rsbivand * R/impacts.R, R/sacsarlm.R: sacsarlm optimizers 2010-10-04 19:55 rsbivand * R/aple.R, R/aple.mc.R, R/apleplot.R, man/aple.Rd, man/aple.mc.Rd, man/aple.plot.Rd: aple trace option 2010-09-29 08:17 rsbivand * DESCRIPTION: impacts single x fixes 2010-09-29 08:09 rsbivand * R/impacts.R: impacts single x fixes 2010-09-29 07:53 rsbivand * R/impacts.R: impacts single x fixes 2010-09-28 14:22 rsbivand * DESCRIPTION, R/impacts.R: impacts with one variable 2010-09-13 16:22 rsbivand * R/s2sls.R: zero.policy in stsls 2010-09-06 07:54 rsbivand * R/nblag.R: nblag_cumul tidy 2010-09-05 19:13 rsbivand * DESCRIPTION, R/nblag.R: modified nblag_cumul 2010-09-03 07:07 rsbivand * ChangeLog, inst/ChangeLog: tidy 2010-09-03 07:04 rsbivand * DESCRIPTION, R/impacts.R: tidy 2010-09-03 06:47 rsbivand * R/impacts.R: mom_int export to cl 2010-08-31 07:50 rsbivand * R/error.spsarlm.R, R/lag.spsarlm.R, R/sacsarlm.R, R/spautolm.R: tidy 2010-08-28 14:43 rsbivand * ChangeLog, inst/ChangeLog: as.double to storage.mode 2010-08-28 14:42 rsbivand * R/dnearneigh.R, R/gabrielneigh.R, R/knearneigh.R, R/relneigh.R, R/soi.R, R/utils.R: as.double to storage.mode 2010-08-27 19:24 rsbivand * ChangeLog, inst/ChangeLog: adding moments trace 2010-08-27 19:23 rsbivand * DESCRIPTION, NAMESPACE, R/edit.nb.R, R/impacts.R, R/jacobian.R, data/elect80.rda, man/do_ldet.Rd, man/edit.nb.Rd, man/elect80.Rd, man/trW.Rd: adding moments trace 2010-08-17 14:05 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/jacobian.R, R/lag.spsarlm.R, R/spautolm.R, man/do_ldet.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: folding spam_update and Matrix_J into fit functions 2010-08-16 16:29 rsbivand * ChangeLog, inst/ChangeLog: adding spam_update method 2010-08-16 16:27 rsbivand * DESCRIPTION, NAMESPACE, R/jacobian.R, man/do_ldet.Rd: adding spam_update method 2010-08-13 11:34 rsbivand * R/jacobian.R, R/nb2listw.R: spam similarity safemode relaxation 2010-08-13 00:38 rsbivand * R/jacobian.R: spam similarity safemode relaxation 2010-08-13 00:37 rsbivand * R/jacobian.R: adding Matrix_J without updating 2010-08-12 21:31 rsbivand * DESCRIPTION, NAMESPACE, R/jacobian.R, man/do_ldet.Rd: adding Matrix_J without updating 2010-07-31 14:08 rsbivand * ChangeLog, inst/ChangeLog: retrofit polylist in edit.nb() 2010-07-31 14:08 rsbivand * DESCRIPTION, R/edit.nb.R, man/edit.nb.Rd: retrofit polylist in edit.nb() 2010-07-07 21:06 rsbivand * ChangeLog, inst/ChangeLog: adding gstsls 2010-07-07 21:02 rsbivand * man/gstsls.Rd: adding gstsls 2010-07-07 14:22 rsbivand * ChangeLog, inst/ChangeLog: spautolm Nagelkerke fix 2010-07-07 14:21 rsbivand * ChangeLog, inst/ChangeLog: spautolm Nagelkerke fix 2010-07-07 14:20 rsbivand * R/summary.spsarlm.R: spautolm Nagelkerke fix 2010-07-03 20:54 rsbivand * ChangeLog, inst/ChangeLog: adding gstsls 2010-07-03 20:50 rsbivand * INDEX: adding gstsls 2010-07-03 20:49 rsbivand * DESCRIPTION, NAMESPACE, R/kpgm_new.R, man/GMerrorsar.Rd: adding gstsls 2010-06-25 11:29 rsbivand * ChangeLog, inst/ChangeLog: mention large n in ML docs 2010-06-25 11:28 rsbivand * man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: mention large n in ML docs 2010-06-24 16:44 rsbivand * R/plot.nb.R, R/tri2nb.R, man/tri2nb.Rd: duplicate coords protection in tri2nb(). 2010-06-24 12:57 rsbivand * DESCRIPTION, R/autocov.R, R/dnearneigh.R, R/knearneigh.R, R/nbdists.R, R/summary.nb.R: longlat protection in dnearneigh() etc. 2010-06-23 08:54 rsbivand * ChangeLog, inst/ChangeLog: probmap/choynowski clarification 2010-06-23 08:54 rsbivand * DESCRIPTION, R/EBI.R, R/choynowski.R, man/choynowski.Rd: probmap/choynowski clarification 2010-06-22 08:41 rsbivand * ChangeLog, inst/ChangeLog: probmap and choynowski clarification, thanks to Michael Hoehle 2010-06-22 08:40 rsbivand * DESCRIPTION, R/EBI.R, R/choynowski.R, man/choynowski.Rd, man/probmap.Rd: probmap and choynowski clarification, thanks to Michael Hoehle 2010-06-17 12:07 rsbivand * ChangeLog, inst/ChangeLog: trap 2-column sparse neighbour file 2010-06-17 12:07 rsbivand * ChangeLog, inst/ChangeLog: trap 2-column sparse neighbour file 2010-06-17 12:06 rsbivand * DESCRIPTION, R/read.gwt2nb.R, man/read.gwt2nb.Rd: trap 2-column sparse neighbour file 2010-06-04 19:15 rsbivand * ChangeLog, inst/ChangeLog: sphet hooks 2010-06-04 19:14 rsbivand * R/impacts.R: sphet hooks 2010-06-04 16:16 rsbivand * ChangeLog, inst/ChangeLog: sphet hooks 2010-06-04 16:16 rsbivand * DESCRIPTION, R/impacts.R: sphet hooks 2010-06-01 09:29 rsbivand * ChangeLog, inst/ChangeLog: tidy 2010-06-01 09:27 rsbivand * R/kpgm_new.R: tidy 2010-05-30 10:06 rsbivand * ChangeLog, inst/ChangeLog: correct errorsarlm analytical SE 2010-05-30 10:06 rsbivand * DESCRIPTION, R/error.hessian.R, R/error.spsarlm.R, R/lag.spsarlm.R: correct errorsarlm analytical SE 2010-05-29 13:52 rsbivand * ChangeLog, inst/ChangeLog: tidy 2010-05-29 13:52 rsbivand * DESCRIPTION: tidy 2010-05-22 08:47 rsbivand * R/sacsarlm.R: llprof 2010-05-21 16:54 rsbivand * DESCRIPTION, R/sacsarlm.R, man/sacsarlm.Rd: sacsar ll profile 2010-05-19 09:59 rsbivand * INDEX: adding SAC/SARAR ML model 2010-05-19 09:47 rsbivand * ChangeLog, inst/ChangeLog: adding SAC/SARAR ML model 2010-05-19 09:46 rsbivand * DESCRIPTION, NAMESPACE, R/impacts.R, R/jacobian.R, R/sacsarlm.R, R/sarlm.R, R/summary.spsarlm.R, man/do_ldet.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/sacsarlm.Rd, src/lagw.c: adding SAC/SARAR ML model 2010-05-11 17:51 rsbivand * ChangeLog, inst/ChangeLog: Nagelkerke in spautolm summary 2010-05-11 17:50 rsbivand * man/spautolm.Rd: Nagelkerke in spautolm summary 2010-05-11 17:32 rsbivand * R/spautolm.R, man/spautolm.Rd: Nagelkerke in spautolm summary 2010-05-06 10:34 rsbivand * ChangeLog, inst/ChangeLog: poly2nb: use SpatialPolygons instead of polylist by default 2010-05-06 10:32 rsbivand * DESCRIPTION: poly2nb: use SpatialPolygons instead of polylist by default 2010-05-06 10:22 rsbivand * R/poly2nb.R, man/poly2nb.Rd: poly2nb: use SpatialPolygons instead of polylist by default 2010-05-05 08:44 rsbivand * ChangeLog, inst/ChangeLog: pass foundInBox to poly2nb 2010-05-05 08:43 rsbivand * R/poly2nb.R, man/poly2nb.Rd: pass foundInBox to poly2nb 2010-05-03 11:27 rsbivand * R/poly2nb.R, man/poly2nb.Rd, src/init.c, src/polypoly.c, src/spdep.h: more poly2nb speedups 2010-04-30 07:06 rsbivand * man/do_ldet.Rd: examples for do_ldet 2010-04-29 18:54 rsbivand * ChangeLog, inst/ChangeLog: documenting do_ldet 2010-04-29 18:52 rsbivand * man/do_ldet.Rd: documenting do_ldet 2010-04-29 18:52 rsbivand * NAMESPACE: documenting do_ldet 2010-04-29 14:34 rsbivand * R/poly2nb.R, man/poly2nb.Rd, src/polypoly.c: back out of knn for poly2nb 2010-04-28 08:45 rsbivand * R/listw2sn.R: tidy 2010-04-28 08:34 rsbivand * DESCRIPTION, INDEX, R/knearneigh.R, R/poly2nb.R, man/knearneigh.Rd, man/poly2nb.Rd: tidy 2010-04-26 08:34 rsbivand * ChangeLog, R/lag.spsarlm.R, R/poly2nb.R, man/poly2nb.Rd: more poly2nb changes 2010-04-22 02:50 rsbivand * DESCRIPTION, R/poly2nb.R, src/init.c, src/polypoly.c, src/spdep.h: poly2nb speedup 2010-04-21 02:49 rsbivand * DESCRIPTION, NAMESPACE, R/AAA.R, R/aple.mc.R, R/spChkOption.R, man/set.spChkOption.Rd: zeroPolicy problem 2010-04-17 22:18 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R, R/jacobian.R, R/kpgm_new.R, R/lag.spsarlm.R, R/listw2sn.R, R/nb2listw.R, R/spautolm.R, man/impacts.sarlm.Rd, man/lagsarlm.Rd, man/listw2sn.Rd: spam as suggested 2010-04-02 10:20 rsbivand * ChangeLog, inst/ChangeLog: control list documentation 2010-04-02 10:19 rsbivand * DESCRIPTION, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: control list documentation 2010-04-01 14:50 rsbivand * R/impacts.R: impacts conflict 2010-04-01 14:05 rsbivand * R/moran.plot.R: moran.plot zero.policy issue 2010-03-24 13:40 rsbivand * R/impacts.R: fix cluster bloat 2010-03-24 11:58 rsbivand * DESCRIPTION, R/impacts.R, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: avoiding cluster bloat 2010-03-22 12:08 rsbivand * INDEX: tidy 2010-03-22 11:10 rsbivand * ChangeLog, inst/ChangeLog: spautolm rewritten to use shared code 2010-03-22 11:09 rsbivand * R/spautolm.R, inst/doc/sids.Rnw, man/spautolm.Rd: spautolm rewritten to use shared code 2010-03-22 10:32 rsbivand * ChangeLog, inst/ChangeLog: spautolm rewritten to use shared code 2010-03-22 10:31 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/jacobian.R, R/lag.spsarlm.R, R/spautolm.R, inst/doc/sids.Rnw, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: spautolm rewritten to use shared code 2010-03-19 20:58 rsbivand * ChangeLog, inst/ChangeLog: adding some cluster awareness 2010-03-19 20:57 rsbivand * R/impacts.R: adding some cluster awareness 2010-03-19 20:13 rsbivand * ChangeLog, inst/ChangeLog: adding some cluster awareness 2010-03-19 20:12 rsbivand * DESCRIPTION, NAMESPACE, R/EBI.R, R/aple.mc.R, R/geary.R, R/impacts.R, R/moran.R, R/sp.mantel.R, R/spChkOption.R, man/EBImoran.mc.Rd, man/aple.mc.Rd, man/geary.mc.Rd, man/localmoran.exact.Rd, man/moran.mc.Rd, man/set.spChkOption.Rd, man/sp.mantel.mc.Rd: adding some cluster awareness 2010-03-18 19:21 rsbivand * ChangeLog, inst/ChangeLog: modularising ML code, adding Jacobian methods 2010-03-18 19:20 rsbivand * DESCRIPTION, R/error.hessian.R, R/error.spsarlm.R, R/jacobian.R, R/lag.hessian.R, R/lag.spsarlm.R, man/boston.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/used.cars.Rd, src/init.c: modularising ML code, adding Jacobian methods 2010-03-17 21:00 rsbivand * DESCRIPTION, R/error.hessian.R, R/error.spsarlm.R, R/impacts.R, R/lag.hessian.R, R/lag.spsarlm.R, man/lagsarlm.Rd, src/card.c, src/dfs_ncomp.c, src/dnn.c, src/gabriel.c, src/gearyw.c, src/gsymtest.c, src/init.c, src/insiders.c, src/jc.c, src/knn.c, src/lagw.c, src/listw2Matrix.c, src/listw2sn.c, src/ml_sse.c, src/nbdists.c, src/polypoly.c, src/relative.c, src/skater.c, src/soigraph.c, src/spdep.h, src/symtest.c: sse C code; impacts cluster 2010-03-16 13:46 rsbivand * ChangeLog, inst/ChangeLog: timing and other changes to lag, error and impact calculations 2010-03-16 13:46 rsbivand * ChangeLog, inst/ChangeLog: timing and other changes to lag, error and impact calculations 2010-03-16 13:36 rsbivand * R/AAA.R, R/error.hessian.R, R/error.spsarlm.R, R/impacts.R, R/lag.hessian.R, R/lag.spsarlm.R, R/nb2mat.R, R/summary.spsarlm.R, data/elect80.rda, man/elect80.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/stsls.Rd, src/Makevars, src/ml_sse.c: timing and other changes to lag, error and impact calculations 2010-03-13 11:16 rsbivand * ChangeLog, inst/ChangeLog: tidy stsls 2010-03-13 11:15 rsbivand * R/s2sls., R/s2sls.R, man/stsls.Rd: tidy stsls 2010-03-12 22:12 gpiras * man/stsls.Rd: add stsls help including the new argument W2X 2010-03-12 22:11 gpiras * man/stsls.Rd: remove stsls help 2010-03-12 22:07 gpiras * R/s2sls.: Add the argument W2X to stsls 2010-03-12 22:05 gpiras * R/s2sls.R: remove stsls 2010-03-12 15:31 rsbivand * DESCRIPTION, R/AAA.R, R/EBI.R, R/ME.R, R/SpatialFiltering.R, R/autocov.R, R/diffnb.R, R/eigenw.R, R/error.spsarlm.R, R/geary.R, R/globalG.R, R/impacts.R, R/jc.R, R/kpgm_new.R, R/lag.spsarlm.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/localmoran.exact.R, R/mess.R, R/moran.R, R/moran.exact.R, R/moran.exact.alt.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/s2sls.R, R/sarlm.R, R/sp.correlogram.R, R/sp.mantel.R, R/spChkOption.R, R/spautolm.R, R/subset.nb.R, R/summary.nb.R, R/utils.R, R/weights-utils.R, man/EBImoran.mc.Rd, man/EBlocal.Rd, man/GMerrorsar.Rd, man/ME.Rd, man/SpatialFiltering.Rd, man/autocov_dist.Rd, man/diffnb.Rd, man/eigenw.Rd, man/errorsarlm.Rd, man/geary.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/globalG.test.Rd, man/joincount.test.Rd, man/lag.listw.Rd, man/lagmess.Rd, man/lagsarlm.Rd, man/lm.LMtests.Rd, man/lm.morantest.Rd, man/lm.morantest.exact.Rd, man/lm.morantest.sad.Rd, man/localG.Rd, man/localmoran.Rd, man/localmoran.exact.Rd, man/localmoran.sad.Rd, man/moran.Rd, man/moran.mc.Rd, man/moran.plot.Rd, man/moran.test.Rd, man/nb2listw.Rd, man/nb2mat.Rd, man/predict.sarlm.Rd, man/set.spChkOption.Rd, man/sp.correlogram.Rd, man/sp.mantel.mc.Rd, man/spautolm.Rd, man/spweights.constants.Rd, man/stsls.Rd, man/subset.listw.Rd, man/summary.nb.Rd, man/testnb.Rd: moving verbose/quiet and zero.policy to global options 2010-02-24 18:29 rsbivand * ChangeLog, inst/ChangeLog: errorsarlm resvar bugfix 2010-02-24 18:29 rsbivand * DESCRIPTION, R/error.spsarlm.R: errorsarlm resvar bugfix 2010-02-03 13:49 rsbivand * ChangeLog, inst/ChangeLog: adding MESS function 2010-02-03 13:47 rsbivand * DESCRIPTION, INDEX, NAMESPACE, R/mess.R, R/summary.spsarlm.R, man/lagmess.Rd: adding MESS function 2010-01-28 12:24 rsbivand * DESCRIPTION, R/globalG.R, man/globalG.test.Rd, man/skater.Rd, man/ssw.Rd: global G warning not error for non-binary weights 2009-12-15 17:16 rsbivand * ChangeLog, inst/ChangeLog: convert impacts to method, provide sarlm and stsls methods 2009-12-15 17:16 rsbivand * R/impacts.R: convert impacts to method, provide sarlm and stsls methods 2009-12-15 08:40 rsbivand * ChangeLog, inst/ChangeLog: adding Hausman test for GMerrorsar 2009-12-15 08:39 rsbivand * NAMESPACE, R/kpgm_new.R, R/summary.spsarlm.R, man/GMerrorsar.Rd, man/LR.sarlm.Rd, man/errorsarlm.Rd, man/summary.sarlm.Rd: adding Hausman test for GMerrorsar 2009-12-14 20:01 rsbivand * ChangeLog, inst/ChangeLog: convert impacts to method, provide sarlm and stsls methods 2009-12-14 19:59 rsbivand * DESCRIPTION, NAMESPACE, R/impacts.R, R/s2sls.R, man/impacts.sarlm.Rd, man/lagsarlm.Rd: convert impacts to method, provide sarlm and stsls methods 2009-12-12 09:51 rsbivand * ChangeLog, inst/ChangeLog: updating stsls 2009-12-12 09:50 rsbivand * DESCRIPTION, NAMESPACE, R/s2sls.R, man/stsls.Rd: updating stsls 2009-11-26 14:32 rsbivand * ChangeLog, inst/ChangeLog: NAMESPACE cleaning 2009-11-26 14:31 rsbivand * ChangeLog, DESCRIPTION, NAMESPACE, inst/ChangeLog: NAMESPACE cleaning 2009-11-26 08:07 rsbivand * ChangeLog, inst/ChangeLog: nb2WB no neighbours fix 2009-11-26 08:07 rsbivand * man/nb2lines.Rd: nb2WB no neighbours fix 2009-11-26 07:43 rsbivand * ChangeLog, inst/ChangeLog: nb2WB no neighbours fix 2009-11-26 07:42 rsbivand * DESCRIPTION, R/nb2listw.R: nb2WB no neighbours fix 2009-11-03 22:35 rsbivand * ChangeLog, inst/ChangeLog: replacing tripack with deldir 2009-11-03 22:35 rsbivand * DESCRIPTION, R/nblag.R, R/tri2nb.R, man/tri2nb.Rd: replacing tripack with deldir 2009-11-03 21:18 rsbivand * ChangeLog, inst/ChangeLog: errorsarlm no-intercept problem 2009-11-03 21:17 rsbivand * DESCRIPTION, R/error.spsarlm.R: errorsarlm no-intercept problem 2009-11-01 10:05 rsbivand * inst/ChangeLog: fix for writing GWT; impact Q components 2009-11-01 10:04 rsbivand * ChangeLog: fix for writing GWT; impact Q components 2009-11-01 10:01 rsbivand * DESCRIPTION, R/impacts.R, R/read.gwt2nb.R, man/impacts.sarlm.Rd, man/invIrM.Rd, man/joincount.multi.Rd, man/nb2blocknb.Rd, man/read.gwt2nb.Rd: fix for writing GWT; impact Q components 2009-10-19 17:22 rsbivand * ChangeLog, inst/ChangeLog: tidy 2009-10-19 17:21 rsbivand * R/error.hessian.R, R/summary.spsarlm.R: tidy 2009-10-17 19:38 rsbivand * ChangeLog, inst/ChangeLog: move errorsarlm/Matrix to Cholesky 2009-10-17 19:37 rsbivand * R/error.hessian.R, R/error.spsarlm.R: move errorsarlm/Matrix to Cholesky 2009-10-16 15:42 rsbivand * ChangeLog, inst/ChangeLog: make Hausman test optional in summary.sarlm 2009-10-16 15:40 rsbivand * DESCRIPTION, R/nb2mat.R, R/summary.spsarlm.R, man/summary.sarlm.Rd: make Hausman test optional in summary.sarlm 2009-10-12 19:22 rsbivand * ChangeLog, inst/ChangeLog: reduce check time use by thinning examples 2009-10-12 19:21 rsbivand * DESCRIPTION, inst/doc/CO69.Rnw, inst/doc/backstore/boot_res.RData: reduce check time use by thinning examples 2009-10-12 18:57 rsbivand * ChangeLog, inst/ChangeLog: reduce check time use by thinning examples 2009-10-12 18:55 rsbivand * DESCRIPTION, inst/doc/CO69.Rnw, inst/doc/backstore, inst/doc/backstore/boot_res.RData, man/ME.Rd, man/aple.mc.Rd, man/aple.plot.Rd, man/impacts.sarlm.Rd, man/joincount.multi.Rd, man/spautolm.Rd: reduce check time use by thinning examples 2009-10-12 11:08 rsbivand * ChangeLog, inst/ChangeLog: bug fix in trW for MC method 2009-10-12 11:02 rsbivand * DESCRIPTION, R/impacts.R, man/trW.Rd: bug fix in trW for MC method 2009-10-06 19:19 rsbivand * INDEX, man/GMerrorsar.Rd: tidy 2009-09-25 12:55 rsbivand * ChangeLog, inst/ChangeLog: lambda standard error for large data sets 2009-09-25 12:55 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/lag.spsarlm.R, man/errorsarlm.Rd, man/lagsarlm.Rd: lambda standard error for large data sets 2009-09-25 12:43 rsbivand * ChangeLog, inst/ChangeLog: lambda standard error for large data sets 2009-09-25 12:42 rsbivand * ChangeLog, inst/ChangeLog: lambda standard error for large data sets 2009-09-25 12:42 rsbivand * R/error.hessian.R: lambda standard error for large data sets 2009-09-24 19:21 rsbivand * ChangeLog, inst/ChangeLog: lambda standard error for large data sets 2009-09-24 19:20 rsbivand * man/impacts.sarlm.Rd: lambda standard error for large data sets 2009-09-24 19:09 rsbivand * ChangeLog, inst/ChangeLog: lambda standard error for large data sets 2009-09-24 19:04 rsbivand * R/error.spsarlm.R, R/lag.spsarlm.R, R/spautolm.R, R/summary.spsarlm.R, man/errorsarlm.Rd, man/lagsarlm.Rd: lambda standard error for large data sets 2009-09-24 14:54 rsbivand * DESCRIPTION, R/error.spsarlm.R, man/errorsarlm.Rd, man/invIrM.Rd: lambda standard error for large data sets 2009-09-24 08:46 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R, R/nb2mat.R, R/summary.spsarlm.R, man/LR.sarlm.Rd, man/errorsarlm.Rd, man/invIrM.Rd: spatial Hausman for large data sets 2009-09-23 07:32 rsbivand * ChangeLog, inst/ChangeLog: added spatial Hausman test for error model 2009-09-23 07:31 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R, R/summary.spsarlm.R, man/LR.sarlm.Rd, man/summary.sarlm.Rd: added spatial Hausman test for error model 2009-09-22 16:56 rsbivand * ChangeLog, inst/ChangeLog: fix no intercept bug 2009-09-22 16:55 rsbivand * R/impacts.R: fix no intercept bug 2009-09-22 09:18 rsbivand * man/lagsarlm.Rd: mixed approximate/asymptotic Hessian 2009-09-22 08:38 rsbivand * DESCRIPTION, R/impacts.R, R/lag.hessian.R, R/lag.spsarlm.R, man/impacts.sarlm.Rd, man/lagsarlm.Rd: mixed approximate/asymptotic Hessian 2009-09-20 18:35 rsbivand * ChangeLog, inst/ChangeLog: mixed approximate/asymptotic Hessian 2009-09-20 18:34 rsbivand * DESCRIPTION, R/lag.spsarlm.R, R/summary.spsarlm.R, man/summary.sarlm.Rd: mixed approximate/asymptotic Hessian 2009-09-19 19:49 rsbivand * ChangeLog, inst/ChangeLog: add house data set 2009-09-19 19:48 rsbivand * man/impacts.sarlm.Rd, man/lagsarlm.Rd: add house data set 2009-09-19 19:18 rsbivand * ChangeLog, inst/ChangeLog: add house data set 2009-09-19 19:16 rsbivand * data/house.RData, man/house.Rd: add house data set 2009-09-19 18:45 rsbivand * ChangeLog, inst/ChangeLog: mixed approximate/asymptotic Hessian 2009-09-19 18:44 rsbivand * man/lagsarlm.Rd: mixed approximate/asymptotic Hessian 2009-09-19 16:17 rsbivand * ChangeLog, inst/ChangeLog: mixed approximate/asymptotic Hessian 2009-09-19 16:15 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/lag.hessian.R, R/lag.spsarlm.R, R/summary.spsarlm.R, man/as_dgRMatrix_listw.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/summary.sarlm.Rd: mixed approximate/asymptotic Hessian 2009-09-14 14:06 rsbivand * R/summary.spsarlm.R: impacts for lag and mixed spatial regressions 2009-09-14 13:31 rsbivand * R/summary.spsarlm.R: impacts for lag and mixed spatial regressions 2009-09-14 13:10 rsbivand * R/summary.spsarlm.R: impacts for lag and mixed spatial regressions 2009-09-14 12:32 rsbivand * R/lag.spsarlm.R, R/summary.spsarlm.R, man/lagsarlm.Rd: impacts for lag and mixed spatial regressions 2009-09-14 08:26 rsbivand * ChangeLog, inst/ChangeLog: impacts for lag and mixed spatial regressions 2009-09-14 08:24 rsbivand * DESCRIPTION, R/lag.spsarlm.R, R/summary.spsarlm.R, man/impacts.sarlm.Rd, man/lagsarlm.Rd: impacts for lag and mixed spatial regressions 2009-09-13 19:42 rsbivand * R/error.spsarlm.R, R/kpgm_new.R, R/lag.hessian.R, R/lag.spsarlm.R, R/spautolm.R, man/as_dgRMatrix_listw.Rd, man/impacts.sarlm.Rd: impacts for lag and mixed spatial regressions 2009-09-13 17:42 rsbivand * R/impacts.R, R/lag.hessian.R, R/lag.spsarlm.R, man/impacts.sarlm.Rd, man/lagsarlm.Rd: impacts for lag and mixed spatial regressions 2009-09-12 21:15 rsbivand * DESCRIPTION, R/impacts.R, R/lag.hessian.R, R/lag.spsarlm.R, man/impacts.sarlm.Rd, man/lagsarlm.Rd: impacts for lag and mixed spatial regressions 2009-09-12 11:54 rsbivand * ChangeLog, inst/ChangeLog: impacts for lag and mixed spatial regressions 2009-09-12 11:52 rsbivand * NAMESPACE, R/impacts.R, R/lag.spsarlm.R, man/impacts.sarlm.Rd, man/trW.Rd: impacts for lag and mixed spatial regressions 2009-09-11 19:45 rsbivand * DESCRIPTION, NAMESPACE, R/impacts.R, R/lag.spsarlm.R: impacts for lag and mixed spatial regressions 2009-09-06 10:04 rsbivand * ChangeLog, inst/ChangeLog: fix bugs in residuals.spautolm for non-NULL na.act 2009-09-06 10:02 rsbivand * ChangeLog, R/error.spsarlm.R, R/lag.spsarlm.R, R/spautolm.R, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: fix bugs in residuals.spautolm for non-NULL na.act 2009-08-17 13:26 rsbivand * DESCRIPTION, inst/doc/00Index.dcf, inst/doc/CO69.Rnw, inst/doc/sids.Rnw, inst/etc/misc/geary_eire.txt, inst/etc/misc/raw_grass_borders.RData, inst/etc/misc/unstand_sn.txt, man/lm.morantest.sad.Rd, man/localmoran.sad.Rd: adding Cliff & Ord 1969 vignette 2009-08-09 17:47 rsbivand * inst/ChangeLog: speedup for make.sym.nb when all observations have neighbours 2009-08-09 17:47 rsbivand * ChangeLog: speedup for make.sym.nb when all observations have neighbours 2009-08-09 14:39 rsbivand * DESCRIPTION, NAMESPACE, R/weights-utils.R, man/testnb.Rd: speedup for make.sym.nb when all observations have neighbours 2009-06-29 12:32 rsbivand * ChangeLog, inst/ChangeLog: aple similarity check override 2009-06-29 12:30 rsbivand * ChangeLog, R/aple.R: aple similarity check override 2009-06-29 12:26 rsbivand * R/aple.R, R/aple.mc.R, R/apleplot.R, man/aple.Rd, man/aple.mc.Rd, man/aple.plot.Rd, man/moran.test.Rd: Geary reversal 2009-06-09 16:36 rsbivand * R/geary.R: Geary's C standard deviate 2009-06-09 16:26 rsbivand * R/geary.R, man/geary.test.Rd: Geary's C standard deviate 2009-06-09 14:41 rsbivand * DESCRIPTION, R/geary.R, man/geary.test.Rd: Geary's C standard deviate 2009-04-27 19:28 rsbivand * R/sarlm.R: predict sarlm details 2009-02-27 12:10 rsbivand * R/moran.exact.R, R/mtmoran.R: first zero eiegenvalue in lm.morantest.* 2009-01-21 12:24 rsbivand * ChangeLog, inst/ChangeLog: gabriel/relative memory overruns; new parser help file changes 2009-01-21 10:31 rsbivand * ChangeLog, DESCRIPTION, R/gabrielneigh.R, R/relneigh.R, inst/ChangeLog, man/GMerrorsar.Rd, man/bhicv.Rd, man/eigenw.Rd, man/errorsarlm.Rd, man/graphneigh.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/lm.LMtests.Rd, man/nblag.Rd, man/spautolm.Rd, src/gabriel.c, src/relative.c: gabriel/relative memory overruns; new parser help file changes 2009-01-02 19:08 rsbivand * ChangeLog, R/utils.R, man/lag.listw.Rd, src/lagw.c: fix NAs in lag.listw 2008-11-25 20:29 rsbivand * DESCRIPTION, R/localmoran.exact.R, R/moran.exact.R, man/lm.morantest.exact.Rd, man/localmoran.exact.Rd: substitute Normal for exact for out of domain II 2008-11-23 02:02 rsbivand * DESCRIPTION, R/moran.exact.R, R/spautolm.R, R/weights-utils.R: SMA revisions 2008-11-19 22:54 rsbivand * DESCRIPTION, R/kpgm_new.R, man/GMerrorsar.Rd: GM revisions 2008-11-10 20:02 rsbivand * R/prunecost.R: fix drop bug in ssw 2008-11-10 18:21 rsbivand * DESCRIPTION: fix drop bug in ssw 2008-11-10 18:18 rsbivand * R/prunecost.R: fix drop bug in ssw 2008-10-25 15:34 rsbivand * ChangeLog, inst/ChangeLog: changelog 2008-10-24 11:16 rsbivand * DESCRIPTION, NAMESPACE, R/apleplot.R, man/aple.plot.Rd: local aple 2008-10-12 14:13 rsbivand * ChangeLog, inst/ChangeLog: changelog 2008-10-12 14:12 rsbivand * ChangeLog, DESCRIPTION, INDEX, NAMESPACE, R/apleplot.R, inst/ChangeLog, man/aple.Rd, man/aple.plot.Rd: adding aple 2008-10-11 12:19 rsbivand * R/aple.R, R/aple.mc.R, data/wheat.txt, inst/etc/shapes/wheat.dbf, inst/etc/shapes/wheat.shp, inst/etc/shapes/wheat.shx, man/aple.Rd, man/aple.mc.Rd, man/wheat.Rd: adding aple 2008-10-11 12:17 rsbivand * ChangeLog, DESCRIPTION, INDEX, NAMESPACE, inst/ChangeLog: adding aple 2008-10-03 06:20 rsbivand * man/aggregate.nb.Rd: aggregate.nb, edit.nb 2008-10-02 21:17 rsbivand * ChangeLog, inst/ChangeLog: merging SKATER regionalisation functions 2008-10-02 21:16 rsbivand * ChangeLog, inst/ChangeLog: merging SKATER regionalisation functions 2008-10-02 21:14 rsbivand * R/mstree.R, R/nbcosts.R, R/plot.mst.R, R/plot.skater.R, R/prunecost.R, R/prunemst.R, R/skater.R, inst/etc/shapes/bhicv.dbf, inst/etc/shapes/bhicv.shp, inst/etc/shapes/bhicv.shx, man/bhicv.Rd, man/mstree.Rd, man/nbcosts.Rd, man/plot.mst.Rd, man/plot.skater.Rd, man/prunecost.Rd, man/prunemst.Rd, man/skater.Rd, man/ssw.Rd, src/skater.c: merging SKATER regionalisation functions 2008-10-02 21:09 rsbivand * ChangeLog, DESCRIPTION, NAMESPACE, R/edit.nb.R, R/plot.nb.R, R/weights-utils.R, inst/ChangeLog, man/plot.nb.Rd: aggregate.nb, edit.nb 2008-09-18 12:21 rsbivand * DESCRIPTION, inst/doc/sids.Rnw: vignette 2008-09-18 07:18 rsbivand * DESCRIPTION, R/nb2mat.R, inst/doc/sids.Rnw: vignette (FIXME), double mat2listw 2008-08-14 12:55 rsbivand * inst/doc/sids.Rnw, man/spautolm.Rd: mdata in spautolm help file 2008-06-27 09:56 rsbivand * ChangeLog, inst/ChangeLog: truncation point in exact Moran 2008-06-27 09:40 rsbivand * DESCRIPTION, R/localmoran.exact.R, R/moran.exact.R, R/moran.exact.alt.R, man/lm.morantest.exact.Rd, man/localmoran.exact.Rd: truncation point in exact Moran 2008-06-19 04:08 rsbivand * man/SpatialFiltering.Rd: link 2008-06-03 13:56 rsbivand * DESCRIPTION, R/EBI.R, R/droplinks.R, R/edit.nb.R, R/localmoran.exact.R, R/moran.exact.alt.R, R/mtlocalmoran.R, R/nb2listw.R, R/p.adjustSP.R, R/read.gal.R, R/subset.nb.R: changed class test to inherits for nb 2008-05-25 21:09 rsbivand * R/nb2listw.R: tidy spam similar 2008-05-24 19:56 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/kpgm_new.R, R/lag.spsarlm.R, R/listw2Matrix.R, R/listw2sn.R, R/nb2listw.R, R/spautolm.R: listw2U and similar.listw in Matrix and spam 2008-05-24 09:06 rsbivand * R/listw2Matrix.R: first notes on listw2U in Matrix 2008-05-14 20:24 rsbivand * inst/ChangeLog: removed try() on Matrix logdet; arg to localmoran 2008-05-14 20:24 rsbivand * ChangeLog: removed try() on Matrix logdet; arg to localmoran 2008-05-14 20:21 rsbivand * svn2cl.xsl: removed try() on Matrix logdet; arg to localmoran 2008-05-14 20:20 rsbivand * inst/ChangeLog: removed try() on Matrix logdet; arg to localmoran 2008-05-14 20:19 rsbivand * inst/ChangeLog: removed try() on Matrix logdet; arg to localmoran 2008-05-14 20:18 rsbivand * ChangeLog, Changelog, DESCRIPTION, R/localmoran.R, man/localmoran.Rd, oChangelog: removed try() on Matrix logdet; arg to localmoran 2008-04-27 16:57 rsbivand * DESCRIPTION, R/spautolm.R, man/spautolm.Rd: 2008-04-26 20:46 rsbivand * Changelog, DESCRIPTION, INDEX, LICENCE, NAMESPACE, data, inst, src: 2008-04-26 20:45 rsbivand * man/COL.OLD.Rd, man/EBImoran.mc.Rd, man/EBest.Rd, man/EBlocal.Rd, man/GMerrorsar.Rd, man/LR.sarlm.Rd, man/ME.Rd, man/NY_data.Rd, man/SpatialFiltering.Rd, man/afcon.Rd, man/airdist.Rd, man/anova.sarlm.Rd, man/as_dgRMatrix_listw.Rd, man/auckland.Rd, man/autocov_dist.Rd, man/baltimore.Rd, man/boston.Rd, man/bptest.sarlm.Rd, man/card.Rd, man/cell2nb.Rd, man/choynowski.Rd, man/columbus.Rd, man/compon.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/droplinks.Rd, man/edit.nb.Rd, man/eigenw.Rd, man/eire.Rd, man/errorsarlm.Rd, man/geary.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/getisord.Rd, man/globalG.test.Rd, man/graphneigh.Rd, man/hopkins.Rd, man/huddersfield.Rd, man/include.self.Rd, man/invIrM.Rd, man/joincount.mc.Rd, man/joincount.multi.Rd, man/joincount.test.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/lag.listw.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/lm.LMtests.Rd, man/lm.morantest.Rd, man/lm.morantest.exact.Rd, man/lm.morantest.sad.Rd, man/localG.Rd, man/localmoran.Rd, man/localmoran.exact.Rd, man/localmoran.sad.Rd, man/mat2listw.Rd, man/moran.Rd, man/moran.mc.Rd, man/moran.plot.Rd, man/moran.test.Rd, man/nb2WB.Rd, man/nb2blocknb.Rd, man/nb2lines.Rd, man/nb2listw.Rd, man/nb2mat.Rd, man/nbdists.Rd, man/nblag.Rd, man/nboperations.Rd, man/nc.sids.Rd, man/p.adjustSP.Rd, man/plot.nb.Rd, man/poly2nb.Rd, man/predict.sarlm.Rd, man/probmap.Rd, man/read.gal.Rd, man/read.gwt2nb.Rd, man/residuals.sarlm.Rd, man/set.spChkOption.Rd, man/similar.listw.Rd, man/sp.correlogram.Rd, man/sp.mantel.mc.Rd, man/spautolm.Rd, man/spdep.Rd, man/spweights.constants.Rd, man/stsls.Rd, man/subset.listw.Rd, man/subset.nb.Rd, man/summary.nb.Rd, man/summary.sarlm.Rd, man/testnb.Rd, man/tri2nb.Rd, man/used.cars.Rd, man/write.nb.gal.Rd: 2008-04-26 19:50 rsbivand * R/AAA.R, R/EBI.R, R/LR.spsarlm.R, R/ME.R, R/SpatialFiltering.R, R/airdist.R, R/anova.sarlm.R, R/autocov.R, R/bptest.sarlm.R, R/card.R, R/cellneighbours.R, R/choynowski.R, R/components.R, R/diffnb.R, R/dnearneigh.R, R/droplinks.R, R/edit.nb.R, R/eigenw.R, R/error.spsarlm.R, R/gabrielneigh.R, R/geary.R, R/globalG.R, R/graph2nb.R, R/jc.R, R/knearneigh.R, R/knn2nb.R, R/kpgm_new.R, R/lag.spsarlm.R, R/listw2Matrix.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/localmoran.exact.R, R/moran.R, R/moran.exact.R, R/moran.exact.alt.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2blocknb.R, R/nb2lines.R, R/nb2listw.R, R/nb2mat.R, R/nbdists.R, R/nblag.R, R/nboperations.R, R/p.adjustSP.R, R/plot.nb.R, R/poly2nb.R, R/read.gal.R, R/read.gwt2nb.R, R/relneigh.R, R/s2sls.R, R/sarlm.R, R/soi.R, R/sp.correlogram.R, R/sp.mantel.R, R/spChkOption.R, R/spautolm.R, R/subset.nb.R, R/summary.nb.R, R/summary.spsarlm.R, R/tri2nb.R, R/utils.R, R/weights-utils.R: 2007-06-25 10:38 stefan7th * ., R, man: Email in Readme changed 2008-04-22 09:17 rsbivand * man/: errorsarlm.Rd, globalG.test.Rd, lagsarlm.Rd: final tidy 2008-03-25 13:21 rsbivand * ChangeLog, R/lag.spsarlm.R, inst/ChangeLog, man/lagsarlm.Rd: Matrix 2008-03-25 12:28 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/kpgm_new.R, R/lag.spsarlm.R, R/spautolm.R, man/GMerrorsar.Rd, man/as_dgRMatrix_listw.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/similar.listw.Rd, man/spautolm.Rd: Matrix 2008-03-25 10:41 rsbivand * R/spautolm.R, man/spautolm.Rd: Matrix 2008-03-23 01:42 rsbivand * R/spautolm.R, man/spautolm.Rd: Matrix 2008-03-18 16:19 rsbivand * DESCRIPTION, R/ME.R, R/error.spsarlm.R, R/kpgm_new.R, R/lag.spsarlm.R, R/spautolm.R, man/GMerrorsar.Rd, man/as_dgRMatrix_listw.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/nc.sids.Rd, man/spautolm.Rd: Matrix 2008-03-15 14:15 rsbivand * DESCRIPTION, NAMESPACE, R/error.spsarlm.R, R/kpgm_new.R, R/lag.spsarlm.R, R/listw2Matrix.R, R/spautolm.R, man/as_dgRMatrix_listw.Rd: Matrix patch 2008-03-14 16:31 rsbivand * ChangeLog, DESCRIPTION, R/listw2Matrix.R, man/as_dgRMatrix_listw.Rd: Matrix 2008-03-13 14:11 rsbivand * ChangeLog, DESCRIPTION, R/error.spsarlm.R, R/kpgm_new.R, R/lag.spsarlm.R, R/listw2Matrix.R, R/spautolm.R, inst/ChangeLog, man/as_dgRMatrix_listw.Rd: Matrix coercion 2008-02-18 16:57 rsbivand * DESCRIPTION: release 2008-02-16 17:32 rsbivand * ChangeLog, R/kpgm_new.R, R/nb2listw.R, R/weights-utils.R, inst/ChangeLog, man/GMerrorsar.Rd, man/testnb.Rd, src/gsymtest.c: big symmetric fuzz 2008-02-09 13:41 rsbivand * DESCRIPTION, man/geary.mc.Rd, man/geary.test.Rd, man/globalG.test.Rd, man/joincount.multi.Rd, man/joincount.test.Rd, man/moran.test.Rd, man/spweights.constants.Rd: adjust n 2008-02-09 10:58 rsbivand * R/jc.R: n adjust 2008-02-09 10:51 rsbivand * R/: geary.R, globalG.R, jc.R, moran.R, utils.R: test warnings fix 2008-02-08 00:42 rsbivand * R/: EBI.R, geary.R, globalG.R, jc.R, lm.LMtests.R, lm.morantest.R, moran.R, moran.exact.R, mtmoran.R, sp.mantel.R: test warnings fix 2008-01-15 19:12 rsbivand * DESCRIPTION, R/mtmoran.R, man/lm.morantest.sad.Rd, man/localmoran.exact.Rd, man/localmoran.sad.Rd: power 2008-01-15 13:18 rsbivand * R/moran.exact.R, R/moran.exact.alt.R, R/mtlocalmoran.R, R/mtmoran.R, man/lm.morantest.exact.Rd: power 2008-01-11 21:37 rsbivand * ChangeLog, R/localmoran.exact.R, R/moran.exact.R, R/moran.exact.alt.R, R/mtlocalmoran.R, R/mtmoran.R, inst/ChangeLog: exact 2008-01-09 08:43 rsbivand * DESCRIPTION, R/moran.exact.R, R/poly2nb.R: more exact 2008-01-05 15:46 rsbivand * R/: AAA.R, ME.R, error.spsarlm.R, lag.spsarlm.R, spautolm.R: spam 2007-12-29 16:43 rsbivand * DESCRIPTION, NAMESPACE, R/AAA.R, R/zzz.R: spam 2007-12-28 17:48 rsbivand * DESCRIPTION, INDEX, NAMESPACE, R/anova.sarlm.R, R/error.spsarlm.R, R/kpgm_new.R, R/lag.spsarlm.R, R/listw2cs.R, R/listw2sn.R, R/spautolm.R, man/asMatrixCsrListw.Rd, man/as_dgRMatrix_listw.Rd, man/boston.Rd, man/eigenw.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/similar.listw.Rd, man/spautolm.Rd, ChangeLog, inst/ChangeLog: spam transition 2007-12-12 09:43 rsbivand * R/kpgm_new.R, man/GMerrorsar.Rd: vv 2007-12-11 17:11 rsbivand * R/spautolm.R, man/spautolm.Rd: llprof 2007-12-09 21:14 rsbivand * R/moran.exact.R, R/mtmoran.R, man/localmoran.exact.Rd: exact 2007-12-06 09:36 rsbivand * R/moran.exact.R, R/mtmoran.R, man/joincount.test.Rd, man/lm.morantest.exact.Rd, man/moran.exact.Rd, NAMESPACE: add exact 2007-11-30 19:34 rsbivand * R/localmoran.exact.R, R/moran.exact.R, R/moran.exact.alt.R, man/compon.Rd, man/graphneigh.Rd, man/moran.exact.Rd, man/nboperations.Rd: exact moran 2007-11-27 20:21 rsbivand * R/: moran.exact.alt.R, mtlocalmoran.R: add exact 2007-11-27 17:45 rsbivand * R/mtmoran.R, man/lm.morantest.sad.Rd: add exact 2007-11-27 17:19 rsbivand * R/: kpgm_new.R, mtmoran.R: add exact 2007-11-27 16:10 rsbivand * ChangeLog, DESCRIPTION, NAMESPACE, R/localmoran.exact.R, R/moran.exact.R, R/moran.exact.alt.R, R/mtlocalmoran.R, R/mtmoran.R, inst/ChangeLog, man/lm.morantest.sad.Rd, man/localmoran.exact.Rd, man/localmoran.sad.Rd, man/moran.exact.Rd: adding Moran exact 2007-11-01 10:45 rsbivand * ChangeLog, DESCRIPTION, R/SpatialFiltering.R, R/geary.R, R/moran.R, R/mtlocalmoran.R, R/mtmoran.R, R/sp.mantel.R, inst/ChangeLog, man/SpatialFiltering.Rd, man/bptest.sarlm.Rd, man/diffnb.Rd, man/geary.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/globalG.test.Rd, man/joincount.test.Rd, man/lag.listw.Rd, man/moran.Rd, man/moran.mc.Rd, man/moran.test.Rd, man/plot.nb.Rd, man/sp.mantel.mc.Rd, man/spweights.constants.Rd: OSX issue 2007-10-09 10:32 rsbivand * DESCRIPTION, R/lm.LMtests.R, R/lm.morantest.R, R/spautolm.R, man/COL.OLD.Rd, man/afcon.Rd, man/auckland.Rd, man/boston.Rd, man/columbus.Rd, man/eire.Rd, man/getisord.Rd, man/lm.LMtests.Rd, man/lm.morantest.Rd, man/nc.sids.Rd, man/spautolm.Rd, man/used.cars.Rd: non_function 2007-07-25 10:50 rsbivand * DESCRIPTION, R/utils.R: lag.listw warning 2007-06-13 10:36 rsbivand * R/globalG.R: globalG 2007-06-12 15:38 rsbivand * R/nb2mat.R, man/spautolm.Rd: inherit in nb2mat 2007-06-11 10:05 rsbivand * DESCRIPTION: encoding 2007-06-10 22:35 rsbivand * DESCRIPTION, R/EBI.R, R/anova.sarlm.R, R/geary.R, R/jc.R, R/moran.R, R/nb2lines.R, R/sp.mantel.R, man/nb2lines.Rd, man/sp.mantel.mc.Rd, ChangeLog, inst/ChangeLog: SMA, moran.mc, nb.comp 2007-06-03 21:28 rsbivand * R/weights-utils.R: n.comp.nb and make.sym.nb fix 2007-05-16 09:23 rsbivand * DESCRIPTION, R/spautolm.R, man/spautolm.Rd: SMA 2007-05-15 09:42 rsbivand * R/ME.R, man/GMerrorsar.Rd, man/ME.Rd, man/SpatialFiltering.Rd, man/autocov_dist.Rd, man/errorsarlm.Rd, man/geary.mc.Rd, man/globalG.test.Rd, man/invIrM.Rd, man/joincount.mc.Rd, man/joincount.multi.Rd, man/joincount.test.Rd, man/lm.morantest.Rd, man/lm.morantest.sad.Rd, man/localmoran.Rd, man/localmoran.sad.Rd, man/moran.mc.Rd, man/moran.test.Rd, man/nb2blocknb.Rd, man/p.adjustSP.Rd, man/plot.nb.Rd, man/poly2nb.Rd, man/predict.sarlm.Rd, man/sp.correlogram.Rd, man/spautolm.Rd, man/stsls.Rd, man/summary.nb.Rd: line breaks 2007-03-26 22:37 rsbivand * R/SpatialFiltering.R: to 4.2 2007-03-26 15:43 rsbivand * DESCRIPTION, R/SpatialFiltering.R, R/nb2listw.R: to 4.2 2007-03-22 10:29 rsbivand * DESCRIPTION, INDEX, man/bptest.sarlm.Rd: status Matrix 2007-03-21 22:09 rsbivand * R/nb2mat.R, man/invIrM.Rd: status Matrix 2007-03-21 20:09 rsbivand * R/kpgm_new.R: status Matrix 2007-03-21 19:46 rsbivand * DESCRIPTION, R/error.spsarlm.R, R/lag.spsarlm.R, R/spautolm.R: status Matrix 2007-03-21 19:16 rsbivand * R/error.spsarlm.R, R/lag.spsarlm.R, R/spautolm.R, man/asMatrixCsrListw.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: status Matrix 2007-03-21 18:20 rsbivand * DESCRIPTION, NAMESPACE, R/ME.R, R/error.spsarlm.R, R/lag.spsarlm.R, R/listw2cs.R, R/spautolm.R, man/listw2sn.Rd, man/similar.listw.Rd: status Matrix 2007-03-21 12:47 rsbivand * DESCRIPTION, R/kpgm_new.R, R/spautolm.R, man/asMatrixCsrListw.Rd, man/boston.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/spautolm.Rd: status Matrix 2007-02-12 18:46 rsbivand * inst/etc/weights/: columbus.gal, ncCC89.gal, ncCR85.gal: missing GAL files 2007-02-12 14:03 rsb * inst/etc/misc/: nc_xtra.dbf, nyadjwts.dbf, nydata.dbf: tidy 2007-02-12 13:56 rsb * DESCRIPTION, NAMESPACE, R/autocov.R, R/dnearneigh.R, R/error.spsarlm.R, R/knearneigh.R, R/nbdists.R, R/nblag.R, R/poly2nb.R, R/sarlm.R, R/summary.nb.R, data/oldcol.rda, inst/CHANGES, man/COL.OLD.Rd, man/EBImoran.mc.Rd, man/EBest.Rd, man/EBlocal.Rd, man/GMerrorsar.Rd, man/LR.sarlm.Rd, man/ME.Rd, man/NY_data.Rd, man/SpatialFiltering.Rd, man/afcon.Rd, man/anova.sarlm.Rd, man/as_dgRMatrix_listw.Rd, man/auckland.Rd, man/autocov_dist.Rd, man/bptest.sarlm.Rd, man/card.Rd, man/choynowski.Rd, man/columbus.Rd, man/compon.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/eire.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/globalG.test.Rd, man/graphneigh.Rd, man/include.self.Rd, man/joincount.test.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/listw2sn.Rd, man/lm.morantest.Rd, man/lm.morantest.sad.Rd, man/localG.Rd, man/localmoran.Rd, man/localmoran.sad.Rd, man/mat2listw.Rd, man/moran.Rd, man/moran.mc.Rd, man/moran.plot.Rd, man/moran.test.Rd, man/nb2WB.Rd, man/nb2lines.Rd, man/nb2listw.Rd, man/nb2mat.Rd, man/nbdists.Rd, man/nblag.Rd, man/nboperations.Rd, man/nc.sids.Rd, man/p.adjustSP.Rd, man/plot.nb.Rd, man/poly2nb.Rd, man/probmap.Rd, man/read.gwt2nb.Rd, man/residuals.sarlm.Rd, man/sp.correlogram.Rd, man/sp.mantel.mc.Rd, man/spautolm.Rd, man/subset.listw.Rd, man/subset.nb.Rd, man/summary.nb.Rd, man/testnb.Rd, man/tri2nb.Rd, man/used.cars.Rd, man/write.nb.gal.Rd, inst/etc/shapes/auckland.dbf, inst/etc/shapes/auckland.shp, inst/etc/shapes/auckland.shx, inst/etc/shapes/columbus.dbf, inst/etc/shapes/columbus.shp, inst/etc/shapes/columbus.shx, inst/etc/shapes/eire.dbf, inst/etc/shapes/eire.shp, inst/etc/shapes/eire.shx, inst/etc/shapes/sids.dbf, inst/etc/shapes/sids.shp, inst/etc/shapes/sids.shx: tidy 2007-02-07 22:07 rsb * man/similar.listw.Rd: status for export; Matrix 2007-02-07 21:58 rsb * R/listw2Matrix.R, man/as_dgRMatrix_listw.Rd, man/nb2WB.Rd, src/listw2Matrix.c: status for export; Matrix 2007-02-07 20:35 rsb * DESCRIPTION, INDEX, NAMESPACE, R/airdist.R, R/card.R, R/cellneighbours.R, R/diffnb.R, R/dnearneigh.R, R/droplinks.R, R/edit.nb.R, R/error.spsarlm.R, R/gabrielneigh.R, R/geary.R, R/graph2nb.R, R/jc.R, R/knearneigh.R, R/knn2nb.R, R/lag.spsarlm.R, R/listw2cs.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/mtlocalmoran.R, R/nb2blocknb.R, R/nb2listw.R, R/nb2mat.R, R/nbdists.R, R/nblag.R, R/nboperations.R, R/poly2nb.R, R/read.gal.R, R/read.gwt2nb.R, R/relneigh.R, R/soi.R, R/spautolm.R, R/subset.nb.R, R/summary.spsarlm.R, R/tri2nb.R, R/utils.R, R/weights-utils.R, inst/CHANGES, man/EBImoran.mc.Rd, man/errorsarlm.Rd, man/joincount.multi.Rd, man/joincount.test.Rd, man/lagsarlm.Rd, man/lm.LMtests.Rd, man/localmoran.sad.Rd, man/spautolm.Rd, man/spweights.constants.Rd: status for export; Matrix 2006-03-10 13:55 rsb * R/ME.R, R/s2sls.R, data/huddersfield.rda, man/ME.Rd, man/huddersfield.Rd, man/stsls.Rd: at 3-22 2006-03-10 13:49 rsb * DESCRIPTION, NAMESPACE, R/EBI.R, R/lm.LMtests.R, inst/CHANGES, man/EBest.Rd, man/GMerrorsar.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/lm.LMtests.Rd, man/predict.sarlm.Rd, man/spautolm.Rd: at 3-22 2006-03-01 09:49 rsb * DESCRIPTION, INDEX, R/SpatialFiltering.R, R/error.spsarlm.R, R/jc.R, R/lag.spsarlm.R, R/sarlm.R, R/sp.correlogram.R, R/spautolm.R, data/auckland.rda, data/columbus.rda, data/eire.rda, data/nc.sids.rda, data/oldcol.rda, inst/CHANGES, man/SpatialFiltering.Rd, man/autocov_dist.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/lm.morantest.Rd, man/read.gal.Rd, man/sp.correlogram.Rd, man/spautolm.Rd: current 2005-12-14 21:39 rsb * NAMESPACE, R/SpatialFiltering.R, R/error.spsarlm.R, R/kpgm_new.R, R/spautolm.R: SpatialFiltering 2005-12-14 13:20 rsb * man/SpatialFiltering.Rd: SpatialFiltering 2005-12-14 12:53 rsb * DESCRIPTION, LICENCE, NAMESPACE, R/SpatialFiltering.R, inst/LICENCE, man/SpatialFiltering.Rd, inst/CHANGES: SpatialFiltering 2005-12-13 09:35 rsb * DESCRIPTION, LICENCE, inst/LICENCE: new functions 2005-12-13 09:23 rsb * R/autocov.R, R/choynowski.R, R/kpgm_new.R, R/nb2blocknb.R, R/nb2lines.R, R/p.adjustSP.R, R/spautolm.R, data/NY_data.rda, data/hopkins.rda, man/GMerrorsar.Rd, man/NY_data.Rd, man/asMatrixCsrListw.Rd, man/autocov_dist.Rd, man/choynowski.Rd, man/hopkins.Rd, man/joincount.multi.Rd, man/nb2blocknb.Rd, man/nb2lines.Rd, man/p.adjustSP.Rd, man/spautolm.Rd, src/gearyw.c, src/gsymtest.c, src/insiders.c, src/polypoly.c: new functions 2005-12-13 09:10 rsb * DESCRIPTION, NAMESPACE, R/bptest.sarlm.R, R/lm.morantest.R, R/mtmoran.R, R/poly2nb.R, man/bptest.sarlm.Rd, man/poly2nb.Rd: new functions 2005-11-29 15:50 rsb * DESCRIPTION, INDEX, NAMESPACE, R/anova.sarlm.R, R/diffnb.R, R/droplinks.R, R/error.spsarlm.R, R/gabrielneigh.R, R/jc.R, R/lag.spsarlm.R, R/listw2cs.R, R/lm.LMtests.R, R/lm.morantest.R, R/moran.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/plot.nb.R, R/poly2nb.R, R/read.gal.R, R/read.gwt2nb.R, R/relneigh.R, R/subset.nb.R, R/summary.spsarlm.R, R/tri2nb.R, R/utils.R, R/zzz.R, inst/doc/sids.Rnw, man/EBImoran.mc.Rd, man/bptest.sarlm.Rd, man/eire.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/moran.mc.Rd, man/nb2listw.Rd, man/plot.nb.Rd, man/tri2nb.Rd: Kohren Sahlis etc 2005-01-20 19:57 rsb * DESCRIPTION, INDEX, LICENCE, NAMESPACE, R/EBI.R, R/cellneighbours.R, R/diffnb.R, R/dnearneigh.R, R/droplinks.R, R/error.spsarlm.R, R/geary.R, R/graph2nb.R, R/jc.R, R/knearneigh.R, R/knn2nb.R, R/lag.spsarlm.R, R/listw2cs.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localmoran.R, R/moran.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/nblag.R, R/nboperations.R, R/plot.nb.R, R/poly2nb.R, R/read.gal.R, R/read.gwt2nb.R, R/sp.correlogram.R, R/sp.mantel.R, R/spwdet.R, R/subset.nb.R, R/weights-utils.R, data/eire.rda, data/used.cars.rda, inst/LICENCE, inst/doc/sids.Rnw, man/boston.Rd, man/errorsarlm.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/lm.morantest.Rd, man/lm.morantest.sad.Rd, man/localmoran.sad.Rd, man/testnb.Rd, man/used.cars.Rd: sp out 2005-01-20 19:18 rsb * src/: spAllocate.c, spBuild.c, spConfig.h, spDefs.h, spFactor.c, spMatrix.h, spUtils.c, spwdet.c: sp out 2004-11-01 18:51 rsb * DESCRIPTION, R/dnearneigh.R, R/listw2sn.R, R/read.gal.R, R/summary.nb.R, inst/doc/sids.Rnw, man/read.gal.Rd: pre lancs 2004-08-17 11:26 rsb * DESCRIPTION, R/knearneigh.R, R/summary.nb.R, R/utils.R, data/nc.sids.rda, inst/doc/sids.Rnw, man/EBImoran.mc.Rd, man/LR.sarlm.Rd, man/moran.mc.Rd, man/nc.sids.Rd: roundup 2004-05-19 08:11 rsb * DESCRIPTION, INDEX, NAMESPACE, R/error.spsarlm.R, R/lag.spsarlm.R, R/listw2sn.R, R/localmoran.R, R/poly2nb.R, R/read.gwt2nb.R, R/sarlm.R, R/summary.spsarlm.R, R/tri2nb.R, R/zzz.R, data/auckland.rda, data/columbus.rda, data/eire.rda, data/oldcol.rda, inst/doc/sids.Rnw, inst/etc/weights/wmat.dat, man/EBest.Rd, man/EBlocal.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/eire.Rd, man/graphneigh.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/lag.listw.Rd, man/localmoran.Rd, man/localmoran.sad.Rd, man/nblag.Rd, man/nboperations.Rd, man/nc.sids.Rd, man/poly2nb.Rd, man/probmap.Rd, man/read.gwt2nb.Rd, man/tri2nb.Rd: changes to 2-17 2004-03-27 21:05 rsb * DESCRIPTION, INDEX, NAMESPACE, R/EBI.R, R/anova.sarlm.R, R/edit.nb.R, R/error.spsarlm.R, R/geary.R, R/globalG.R, R/jc.R, R/lag.spsarlm.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localmoran.R, R/moran.R, R/mtlocalmoran.R, R/mtmoran.R, R/poly2nb.R, R/read.gal.R, R/read.gwt2nb.R, R/sarlm.R, R/sp.mantel.R, R/spwdet.R, R/subset.nb.R, R/summary.nb.R, R/summary.spsarlm.R, R/utils.R, R/weights-utils.R, data/auckland.rda, data/columbus.rda, data/eire.rda, data/nc.sids.rda, data/oldcol.rda, data/used.cars.rda, inst/doc/00Index.dcf, inst/doc/sids.Rnw, man/COL.OLD.Rd, man/EBImoran.mc.Rd, man/EBest.Rd, man/EBlocal.Rd, man/LR.sarlm.Rd, man/auckland.Rd, man/columbus.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/edit.nb.Rd, man/eigenw.Rd, man/eire.Rd, man/errorsarlm.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/globalG.test.Rd, man/graphneigh.Rd, man/joincount.mc.Rd, man/joincount.test.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/lag.listw.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/lm.morantest.Rd, man/lm.morantest.sad.Rd, man/localmoran.Rd, man/localmoran.sad.Rd, man/moran.Rd, man/moran.mc.Rd, man/moran.test.Rd, man/nblag.Rd, man/nboperations.Rd, man/nc.sids.Rd, man/poly2nb.Rd, man/probmap.Rd, man/read.gal.Rd, man/read.gwt2nb.Rd, man/residuals.sarlm.Rd, man/sp.mantel.mc.Rd, man/spweights.constants.Rd, man/subset.listw.Rd, man/summary.sarlm.Rd, man/tri2nb.Rd, man/used.cars.Rd, src/jc.c, src/lagw.c, src/listw2sn.c, R/bptest.sarlm.R, man/bptest.sarlm.Rd: after AAG 2003-09-12 18:28 rsb * man/: joincount.mc.Rd, joincount.test.Rd: 2.4 fixes 2003-09-12 18:24 rsb * DESCRIPTION, INDEX, NAMESPACE, R/diffnb.R, R/dnearneigh.R, R/graph2nb.R, R/knn2nb.R, R/listw2sn.R, R/nb2mat.R, R/poly2nb.R, R/read.gal.R, R/sp.correlogram.R, R/summary.nb.R, R/summary.spsarlm.R, R/tri2nb.R, data/nc.sids.rda, inst/doc/00Index.dcf, inst/doc/sids.Rnw, inst/doc/spdep.Rnw, inst/doc/spdep.pdf, man/EBImoran.mc.Rd, man/dnearneigh.Rd, man/errorsarlm.Rd, man/geary.Rd, man/joincount.Rd, man/knearneigh.Rd, man/lagsarlm.Rd, man/lm.LMtests.Rd, man/mat2listw.Rd, man/nc.sids.Rd, man/poly2nb.Rd, man/sp.correlogram.Rd, src/dnn.c: 2.4 fixes 2003-08-27 10:01 rsb * DESCRIPTION, INDEX, R/LR.spsarlm.R, R/geary.R, R/jc.R, R/lm.morantest.R, R/moran.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/plot.nb.R, R/poly2nb.R, R/utils.R, R/weights-utils.R, R/zzz.R, inst/doc/spdep.Rnw, inst/doc/spdep.pdf, man/EBest.Rd, man/EBlocal.Rd, man/Map2poly.Rd, man/columbus.Rd, man/diffnb.Rd, man/eire.Rd, man/graphneigh.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/moran.plot.Rd, man/nblag.Rd, man/nboperations.Rd, man/nc.sids.Rd, man/plotpolys.Rd, man/poly2nb.Rd, man/probmap.Rd, man/read.gwt2nb.Rd, man/spdep.Rd, man/tri2nb.Rd, NAMESPACE: pre 2-2 2003-08-07 22:22 rsb * man/: Map2poly.Rd, anova.sarlm.Rd, baltimore.Rd, read.gwt2nb.Rd, sp.mantel.mc.Rd: at 0.1-13 2003-08-07 22:18 rsb * inst/doc/00Index.dcf, inst/doc/spdep.Rnw, inst/doc/spdep.pdf, inst/etc/weights/baltk4.GWT, inst/etc/weights/us48.txt, inst/etc/weights/us48_q.GAL, inst/etc/weights/us48_rk.GAL, data/baltimore.rda: at 0.1-13 2003-08-07 22:15 rsb * R/: anova.sarlm.R, sp.mantel.R: at 0.1-13 2003-08-07 22:11 rsb * DESCRIPTION, INDEX, R/EBI.R, R/LR.spsarlm.R, R/card.R, R/diffnb.R, R/dnearneigh.R, R/edit.nb.R, R/eigenw.R, R/error.spsarlm.R, R/geary.R, R/globalG.R, R/jc.R, R/knearneigh.R, R/lag.spsarlm.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/moran.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nbdists.R, R/plot.nb.R, R/poly2nb.R, R/read.gal.R, R/sp.correlogram.R, R/summary.nb.R, R/summary.spsarlm.R, R/utils.R, R/weights-utils.R, R/zzz.R, data/00Index, data/BH.rda, data/eire.rda, data/nc.sids.rda, man/BH.Rd, man/COL.OLD.Rd, man/EBImoran.mc.Rd, man/EBest.Rd, man/EBlocal.Rd, man/LR.sarlm.Rd, man/afcon.Rd, man/columbus.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/eire.Rd, man/geary.test.Rd, man/joincount.test.Rd, man/knearneigh.Rd, man/listw2sn.Rd, man/lm.LMtests.Rd, man/moran.test.Rd, man/nb2listw.Rd, man/nbdists.Rd, man/nc.sids.Rd, man/plot.nb.Rd, man/plotpolys.Rd, man/poly2nb.Rd, man/probmap.Rd, man/read.gal.Rd, man/sp.correlogram.Rd, man/spweights.constants.Rd, man/summary.nb.Rd, man/write.nb.gal.Rd, src/dnn.c, src/knn.c, src/nbdists.c: at 0.1-13 2003-04-26 16:19 rsb * R/LR.spsarlm.R, R/graph2nb.R, R/nb2listw.R, R/nboperations.R, R/read.gal.R, R/weights-utils.R, man/EBest.Rd, man/EBlocal.Rd, man/probmap.Rd: EB and inherits 2003-04-23 23:03 rsb * DESCRIPTION, INDEX, LICENCE, R/EBI.R, R/dnearneigh.R, R/eigenw.R, R/error.spsarlm.R, R/geary.R, R/globalG.R, R/jc.R, R/knearneigh.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/moran.R, R/moran.plot.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/poly2nb.R, R/sarlm.R, R/spChkOption.R, R/utils.R, data/00Index, data/auckland.rda, inst/LICENCE, man/EBImoran.mc.Rd, man/EBest.Rd, man/EBlocal.Rd, man/auckland.Rd, man/moran.test.Rd, man/nc.sids.Rd, man/plotpolys.Rd, man/poly2nb.Rd, man/probmap.Rd, man/set.spChkOption.Rd: EB and inherits 2003-01-21 20:32 rsb * R/EBI.R, R/geary.R, R/globalG.R, R/jc.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/moran.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/sp.correlogram.R, R/spChkOption.R, R/utils.R, R/zzz.R, data/nc.sids.rda, data/oldcol.rda, data/used.cars.rda, man/BH.Rd, man/EBImoran.mc.Rd, man/afcon.Rd, man/eire.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/globalG.test.Rd, man/joincount.mc.Rd, man/joincount.test.Rd, man/lm.LMtests.Rd, man/lm.morantest.Rd, man/lm.morantest.sad.Rd, man/localG.Rd, man/localmoran.Rd, man/localmoran.sad.Rd, man/moran.mc.Rd, man/moran.plot.Rd, man/moran.test.Rd, man/nc.sids.Rd, man/set.spChkOption.Rd, man/sp.correlogram.Rd, man/used.cars.Rd: spChk 2003-01-20 20:33 rsb * INDEX, R/EBI.R, R/jc.R, data/00Index, man/BH.Rd, man/EBImoran.mc.Rd, man/joincount.mc.Rd, src/jc.c: jc-update 2003-01-20 12:25 rsb * DESCRIPTION, LICENCE, R/eigenw.R, R/error.spsarlm.R, R/lag.spsarlm.R, R/nb2mat.R, inst/LICENCE, man/localmoran.Rd, R/EBI.R, data/BH.rda, man/BH.Rd, man/EBImoran.mc.Rd: EBI 2002-08-20 09:12 rsb * DESCRIPTION, INDEX, LICENCE, R/geary.R, R/globalG.R, R/jc.R, R/moran.R, R/sarlm.R, R/sp.correlogram.R, R/subset.nb.R, data/boston.rda, inst/LICENCE, man/boston.Rd, man/geary.Rd, man/geary.mc.Rd, man/globalG.test.Rd, man/joincount.mc.Rd, man/moran.mc.Rd, man/predict.sarlm.Rd, man/sp.correlogram.Rd, src/lagw.c, src/spFactor.c, src/spMatrix.h: formats without l 2002-08-06 13:35 rsb * DESCRIPTION, INDEX, R/error.spsarlm.R, R/geary.R, R/jc.R, R/lag.spsarlm.R, R/lm.morantest.R, R/localmoran.R, R/moran.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/sarlm.R, R/spwdet.R, R/summary.spsarlm.R, R/utils.R, data/00Index, man/errorsarlm.Rd, man/invIrM.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/localmoran.sad.Rd, man/nc.sids.Rd, man/predict.sarlm.Rd, man/residuals.sarlm.Rd, src/spAllocate.c, src/spConfig.h, src/spDefs.h, src/spwdet.c: predict 2002-04-15 18:35 rsb * INDEX, LICENCE, R/diffnb.R, R/geary.R, R/jc.R, R/moran.R, R/nboperations.R, R/utils.R, data/00Index, data/eire.rda, data/nc.sids.rda, inst/LICENCE, man/boston.Rd, man/joincount.test.Rd, man/nc.sids.Rd, man/spweights.constants.Rd: added sids 2002-04-13 16:12 rsb * DESCRIPTION, R/lm.LMtests.R, R/lm.morantest.R, R/mtlocalmoran.R, R/mtmoran.R, R/spwdet.R, data/afcon.rda, data/boston.rda, data/columbus.rda, data/eire.rda, data/getisord.rda, data/oldcol.rda, data/used.cars.rda, man/boston.Rd: before SB 2002-03-19 22:50 rsb * man/listw2sn.Rd: release 2002-03-19 22:27 rsb * R/LR.spsarlm.R, R/airdist.R, R/card.R, R/cellneighbours.R, R/components.R, R/diffnb.R, R/dnearneigh.R, R/droplinks.R, R/edit.nb.R, R/eigenw.R, R/error.spsarlm.R, R/gabrielneigh.R, R/geary.R, R/graph2nb.R, R/jc.R, R/knearneigh.R, R/knn2nb.R, R/lag.spsarlm.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/moran.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/nbdists.R, R/nblag.R, R/nboperations.R, R/plot.nb.R, R/poly2nb.R, R/read.gal.R, R/relneigh.R, R/soi.R, R/spwdet.R, R/subset.nb.R, R/summary.nb.R, R/summary.spsarlm.R, R/tri2nb.R, R/utils.R, R/weights-utils.R, R/zzz.R, src/card.c, src/dfs_ncomp.c, src/lagw.c, src/listw2sn.c, src/nbdists.c, src/relative.c, src/soigraph.c, src/spwdet.c, src/symtest.c, LICENCE, inst/LICENCE: release 2002-03-19 13:05 rsb * DESCRIPTION, R/error.spsarlm.R, R/lag.spsarlm.R, R/spwdet.R, man/errorsarlm.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, src/spAllocate.c, src/spBuild.c, src/spConfig.h, src/spDefs.h, src/spFactor.c, src/spMatrix.h, src/spUtils.c, src/spwdet.c: nearer release 2002-03-17 00:02 rsb * R/card.R, R/cellneighbours.R, R/components.R, R/dnearneigh.R, R/edit.nb.R, R/error.spsarlm.R, R/gabrielneigh.R, R/geary.R, R/knearneigh.R, R/lag.spsarlm.R, R/listw2sn.R, R/lm.LMtests.R, R/localmoran.R, R/moran.R, R/nbdists.R, R/relneigh.R, R/soi.R, R/summary.nb.R, R/utils.R, R/weights-utils.R, man/afcon.Rd, man/cell2nb.Rd, man/columbus.Rd, man/compon.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/errorsarlm.Rd, man/getisord.Rd, man/invIrM.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/lag.listw.Rd, man/lagsarlm.Rd, man/localG.Rd, man/nblag.Rd, man/plot.nb.Rd, man/poly2nb.Rd, man/subset.nb.Rd, man/testnb.Rd, man/tri2nb.Rd, man/used.cars.Rd: release 2002-03-15 23:35 rsb * DESCRIPTION, INDEX, R/LR.spsarlm.R, R/airdist.R, R/card.R, R/cellneighbours.R, R/components.R, R/diffnb.R, R/dnearneigh.R, R/droplinks.R, R/edit.nb.R, R/eigenw.R, R/error.spsarlm.R, R/gabrielneigh.R, R/geary.R, R/graph2nb.R, R/jc.R, R/knearneigh.R, R/knn2nb.R, R/lag.spsarlm.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/moran.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/nbdists.R, R/nblag.R, R/nboperations.R, R/plot.nb.R, R/poly2nb.R, R/read.gal.R, R/relneigh.R, R/soi.R, R/subset.nb.R, R/summary.nb.R, R/summary.spsarlm.R, R/tri2nb.R, R/utils.R, R/weights-utils.R, R/zzz.R, data/00Index, data/afcon.rda, data/columbus.rda, data/eire.rda, data/getisord.rda, data/oldcol.rda, data/used.cars.rda, man/COL.OLD.Rd, man/LR.sarlm.Rd, man/afcon.Rd, man/airdist.Rd, man/card.Rd, man/cell2nb.Rd, man/columbus.Rd, man/compon.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/droplinks.Rd, man/edit.nb.Rd, man/eigenw.Rd, man/eire.Rd, man/errorsarlm.Rd, man/geary.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/getisord.Rd, man/graphneigh.Rd, man/include.self.Rd, man/invIrM.Rd, man/joincount.Rd, man/joincount.mc.Rd, man/joincount.test.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/lag.listw.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/lm.LMtests.Rd, man/lm.morantest.Rd, man/lm.morantest.sad.Rd, man/localG.Rd, man/localmoran.Rd, man/localmoran.sad.Rd, man/moran.Rd, man/moran.mc.Rd, man/moran.plot.Rd, man/moran.test.Rd, man/nb2listw.Rd, man/nb2mat.Rd, man/nbdists.Rd, man/nblag.Rd, man/nboperations.Rd, man/plot.nb.Rd, man/plotpolys.Rd, man/poly2nb.Rd, man/read.gal.Rd, man/spweights.constants.Rd, man/subset.nb.Rd, man/summary.nb.Rd, man/summary.sarlm.Rd, man/testnb.Rd, man/tri2nb.Rd, man/used.cars.Rd, man/write.nb.gal.Rd, src/card.c, src/dfs_ncomp.c, src/dnn.c, src/gabriel.c, src/knn.c, src/lagw.c, src/listw2sn.c, src/nbdists.c, src/relative.c, src/soigraph.c, src/symtest.c: Imported sources 2002-03-15 23:35 rsb * DESCRIPTION, INDEX, R/LR.spsarlm.R, R/airdist.R, R/card.R, R/cellneighbours.R, R/components.R, R/diffnb.R, R/dnearneigh.R, R/droplinks.R, R/edit.nb.R, R/eigenw.R, R/error.spsarlm.R, R/gabrielneigh.R, R/geary.R, R/graph2nb.R, R/jc.R, R/knearneigh.R, R/knn2nb.R, R/lag.spsarlm.R, R/listw2sn.R, R/lm.LMtests.R, R/lm.morantest.R, R/localG.R, R/localmoran.R, R/moran.R, R/moran.plot.R, R/mtlocalmoran.R, R/mtmoran.R, R/nb2listw.R, R/nb2mat.R, R/nbdists.R, R/nblag.R, R/nboperations.R, R/plot.nb.R, R/poly2nb.R, R/read.gal.R, R/relneigh.R, R/soi.R, R/subset.nb.R, R/summary.nb.R, R/summary.spsarlm.R, R/tri2nb.R, R/utils.R, R/weights-utils.R, R/zzz.R, data/00Index, data/afcon.rda, data/columbus.rda, data/eire.rda, data/getisord.rda, data/oldcol.rda, data/used.cars.rda, man/COL.OLD.Rd, man/LR.sarlm.Rd, man/afcon.Rd, man/airdist.Rd, man/card.Rd, man/cell2nb.Rd, man/columbus.Rd, man/compon.Rd, man/diffnb.Rd, man/dnearneigh.Rd, man/droplinks.Rd, man/edit.nb.Rd, man/eigenw.Rd, man/eire.Rd, man/errorsarlm.Rd, man/geary.Rd, man/geary.mc.Rd, man/geary.test.Rd, man/getisord.Rd, man/graphneigh.Rd, man/include.self.Rd, man/invIrM.Rd, man/joincount.Rd, man/joincount.mc.Rd, man/joincount.test.Rd, man/knearneigh.Rd, man/knn2nb.Rd, man/lag.listw.Rd, man/lagsarlm.Rd, man/listw2sn.Rd, man/lm.LMtests.Rd, man/lm.morantest.Rd, man/lm.morantest.sad.Rd, man/localG.Rd, man/localmoran.Rd, man/localmoran.sad.Rd, man/moran.Rd, man/moran.mc.Rd, man/moran.plot.Rd, man/moran.test.Rd, man/nb2listw.Rd, man/nb2mat.Rd, man/nbdists.Rd, man/nblag.Rd, man/nboperations.Rd, man/plot.nb.Rd, man/plotpolys.Rd, man/poly2nb.Rd, man/read.gal.Rd, man/spweights.constants.Rd, man/subset.nb.Rd, man/summary.nb.Rd, man/summary.sarlm.Rd, man/testnb.Rd, man/tri2nb.Rd, man/used.cars.Rd, man/write.nb.gal.Rd, src/card.c, src/dfs_ncomp.c, src/dnn.c, src/gabriel.c, src/knn.c, src/lagw.c, src/listw2sn.c, src/nbdists.c, src/relative.c, src/soigraph.c, src/symtest.c: Initial revision spdep/inst/doc/ 0000755 0001762 0000144 00000000000 13152260232 013103 5 ustar ligges users spdep/inst/doc/sids.R 0000644 0001762 0000144 00000043140 13152260232 014172 0 ustar ligges users ### R code from vignette source 'sids.Rnw' ### Encoding: UTF-8 ################################################### ### code chunk number 1: sids.Rnw:31-36 ################################################### owidth <- getOption("width") options("width"=70) ow <- getOption("warn") options("warn"=-1) .PngNo <- 0 ################################################### ### code chunk number 2: afig (eval = FALSE) ################################################### ## .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") ## pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") ## opar <- par(mar=c(3,3,1,1)+0.1) ################################################### ### code chunk number 3: afigl (eval = FALSE) ################################################### ## .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") ## pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") ################################################### ### code chunk number 4: bfigl (eval = FALSE) ################################################### ## .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") ## pdf(file=file, width = 6.5, height = 5, pointsize = 12, bg = "white") ################################################### ### code chunk number 5: zfig (eval = FALSE) ################################################### ## par(opar) ## dev.null <- dev.off() ## cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 6: zfigl (eval = FALSE) ################################################### ## dev.null <- dev.off() ## cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 7: sids.Rnw:77-78 ################################################### library(spdep) ################################################### ### code chunk number 8: sids.Rnw:95-101 ################################################### library(sp) library(maptools) library(spdep) nc_file <- system.file("etc/shapes/sids.shp", package="spdep")[1] llCRS <- CRS("+proj=longlat +datum=NAD27") nc <- readShapeSpatial(nc_file, ID="FIPSNO", proj4string=llCRS) ################################################### ### code chunk number 9: plotNC1 (eval = FALSE) ################################################### ## plot(nc, axes=TRUE) ## text(coordinates(nc), label=nc$FIPSNO, cex=0.5) ################################################### ### code chunk number 10: sids.Rnw:123-126 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") opar <- par(mar=c(3,3,1,1)+0.1) plot(nc, axes=TRUE) text(coordinates(nc), label=nc$FIPSNO, cex=0.5) par(opar) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 11: sids.Rnw:139-141 ################################################### names(nc) summary(nc) ################################################### ### code chunk number 12: sids.Rnw:151-157 ################################################### gal_file <- system.file("etc/weights/ncCR85.gal", package="spdep")[1] ncCR85 <- read.gal(gal_file, region.id=nc$FIPSNO) ncCR85 gal_file <- system.file("etc/weights/ncCC89.gal", package="spdep")[1] ncCC89 <- read.gal(gal_file, region.id=nc$FIPSNO) ncCC89 ################################################### ### code chunk number 13: plot-CC89.nb (eval = FALSE) ################################################### ## plot(nc, border="grey") ## plot(ncCC89, coordinates(nc), add=TRUE, col="blue") ################################################### ### code chunk number 14: sids.Rnw:170-173 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") opar <- par(mar=c(3,3,1,1)+0.1) plot(nc, border="grey") plot(ncCC89, coordinates(nc), add=TRUE, col="blue") par(opar) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 15: sids.Rnw:193-197 ################################################### ncCC89 r.id <- attr(ncCC89, "region.id") ncCC89[[match("37001", r.id)]] r.id[ncCC89[[match("37001", r.id)]]] ################################################### ### code chunk number 16: sids.Rnw:207-208 ################################################### as.character(nc$NAME)[card(ncCC89) == 0] ################################################### ### code chunk number 17: sids.Rnw:243-249 ################################################### ch <- choynowski(nc$SID74, nc$BIR74) nc$ch_pmap_low <- ifelse(ch$type, ch$pmap, NA) nc$ch_pmap_high <- ifelse(!ch$type, ch$pmap, NA) prbs <- c(0,.001,.01,.05,.1,1) nc$high = cut(nc$ch_pmap_high, prbs) nc$low = cut(nc$ch_pmap_low,prbs ) ################################################### ### code chunk number 18: sids.Rnw:251-252 (eval = FALSE) ################################################### ## spplot(nc, c("low", "high"), col.regions=grey.colors(5)) ################################################### ### code chunk number 19: sids.Rnw:258-261 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") print(spplot(nc, c("low", "high"), col.regions=grey.colors(5))) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 20: sids.Rnw:285-289 ################################################### pmap <- probmap(nc$SID74, nc$BIR74) nc$pmap <- pmap$pmap brks <- c(0,0.001,0.01,0.025,0.05,0.95,0.975,0.99,0.999,1) library(RColorBrewer) ################################################### ### code chunk number 21: sids.Rnw:291-292 (eval = FALSE) ################################################### ## spplot(nc, "pmap", at=brks, col.regions=rev(brewer.pal(9, "RdBu"))) ################################################### ### code chunk number 22: sids.Rnw:298-301 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") print(spplot(nc, "pmap", at=brks, col.regions=rev(brewer.pal(9, "RdBu")))) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 23: poishist (eval = FALSE) ################################################### ## hist(nc$pmap, main="") ################################################### ### code chunk number 24: sids.Rnw:328-331 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") opar <- par(mar=c(3,3,1,1)+0.1) hist(nc$pmap, main="") par(opar) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 25: sids.Rnw:346-349 ################################################### res <- glm(SID74 ~ offset(log(BIR74)), data=nc, family="quasipoisson") nc$stdres <- rstandard(res) brks <- c(-4, -3, -2, -1.5, -1, -0.5, 0.5, 1, 1.5, 2, 3, 4) ################################################### ### code chunk number 26: sids.Rnw:351-352 (eval = FALSE) ################################################### ## spplot(nc, "stdres", at=brks, col.regions=rev(brewer.pal(11, "RdBu"))) ################################################### ### code chunk number 27: sids.Rnw:370-373 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") print(spplot(nc, "stdres", at=brks, col.regions=rev(brewer.pal(11, "RdBu")))) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 28: sids.Rnw:402-408 ################################################### global_rate <- sum(nc$SID74)/sum(nc$BIR74) nc$Expected <- global_rate * nc$BIR74 res <- EBlocal(nc$SID74, nc$Expected, ncCC89, zero.policy=TRUE) nc$EB_loc <- res$est brks <- c(0, 0.25, 0.5, 0.75, 1, 2, 3, 4, 5) spl <- list("sp.text", loc=coordinates(nc)[card(ncCC89) == 0,], txt=rep("*", 2), cex=1.2) ################################################### ### code chunk number 29: sids.Rnw:410-411 (eval = FALSE) ################################################### ## spplot(nc, "EB_loc", at=brks, col.regions=rev(brewer.pal(8, "RdBu")), sp.layout=spl) ################################################### ### code chunk number 30: sids.Rnw:423-426 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") print(spplot(nc, "EB_loc", at=brks, col.regions=rev(brewer.pal(8, "RdBu")), sp.layout=spl)) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 31: sids.Rnw:438-440 ################################################### set.seed(1) EBImoran.mc(nc$SID74, nc$BIR74, nb2listw(ncCC89, style="B", zero.policy=TRUE), nsim=999, zero.policy=TRUE) ################################################### ### code chunk number 32: sids.Rnw:454-456 ################################################### nc$both <- factor(paste(nc$L_id, nc$M_id, sep=":")) nboth <- length(table(unclass(nc$both))) ################################################### ### code chunk number 33: sids.Rnw:458-459 (eval = FALSE) ################################################### ## spplot(nc, "both", col.regions=sample(rainbow(nboth))) ################################################### ### code chunk number 34: sids.Rnw:465-468 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") print(spplot(nc, "both", col.regions=sample(rainbow(nboth)))) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 35: sids.Rnw:478-480 ################################################### nc$ft.SID74 <- sqrt(1000)*(sqrt(nc$SID74/nc$BIR74) + sqrt((nc$SID74+1)/nc$BIR74)) stem(round(nc$ft.SID74, 1), scale=2) ################################################### ### code chunk number 36: sids.Rnw:497-499 ################################################### mBIR74 <- tapply(nc$BIR74, nc$both, sum) mSID74 <- tapply(nc$SID74, nc$both, sum) ################################################### ### code chunk number 37: sids.Rnw:511-515 ################################################### mFT <- sqrt(1000)*(sqrt(mSID74/mBIR74) + sqrt((mSID74+1)/mBIR74)) mFT1 <- t(matrix(mFT, 4, 4, byrow=TRUE)) med <- medpolish(mFT1, na.rm=TRUE, trace.iter=FALSE) med ################################################### ### code chunk number 38: sids.Rnw:527-531 ################################################### mL_id <- model.matrix(~ as.factor(nc$L_id) -1) mM_id <- model.matrix(~ as.factor(nc$M_id) -1) nc$pred <- c(med$overall + mL_id %*% med$row + mM_id %*% med$col) nc$mp_resid <- nc$ft.SID74 - nc$pred ################################################### ### code chunk number 39: medpolfig (eval = FALSE) ################################################### ## cI_ft <- pretty(nc$ft.SID74, n=9) ## pal_ft <- colorRampPalette(brewer.pal(6, "YlOrBr"))(length(cI_ft)-1) ## p1 <- spplot(nc, c("ft.SID74"), col.regions=pal_ft, at=cI_ft, col="grey30", main="FT transformed SIDS rate") ## p2 <- spplot(nc, c("pred"), col.regions=pal_ft, at=cI_ft, col="grey30", main="Median-polish fit") ## atn <- pretty(nc$mp_resid[nc$mp_resid < 0]) ## atp <- pretty(nc$mp_resid[nc$mp_resid >= 0]) ## pal <- c(rev(brewer.pal(length(atn-1), "YlOrRd")), brewer.pal(length(atp[-1]), "YlGnBu")[-1]) ## p3 <- spplot(nc, "mp_resid", at=c(atn, atp[-1]), col.regions=pal, col="grey30", main="Median-polish residuals") ## plot(p1, split=c(1,1,1,3), more=TRUE) ## plot(p2, split=c(1,2,1,3), more=TRUE) ## plot(p3, split=c(1,3,1,3), more=FALSE) ################################################### ### code chunk number 40: sids.Rnw:550-553 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 5, pointsize = 12, bg = "white") cI_ft <- pretty(nc$ft.SID74, n=9) pal_ft <- colorRampPalette(brewer.pal(6, "YlOrBr"))(length(cI_ft)-1) p1 <- spplot(nc, c("ft.SID74"), col.regions=pal_ft, at=cI_ft, col="grey30", main="FT transformed SIDS rate") p2 <- spplot(nc, c("pred"), col.regions=pal_ft, at=cI_ft, col="grey30", main="Median-polish fit") atn <- pretty(nc$mp_resid[nc$mp_resid < 0]) atp <- pretty(nc$mp_resid[nc$mp_resid >= 0]) pal <- c(rev(brewer.pal(length(atn-1), "YlOrRd")), brewer.pal(length(atp[-1]), "YlGnBu")[-1]) p3 <- spplot(nc, "mp_resid", at=c(atn, atp[-1]), col.regions=pal, col="grey30", main="Median-polish residuals") plot(p1, split=c(1,1,1,3), more=TRUE) plot(p2, split=c(1,2,1,3), more=TRUE) plot(p3, split=c(1,3,1,3), more=FALSE) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 41: sids.Rnw:579-587 ################################################### sids.nhbr30.dist <- nbdists(ncCC89, cbind(nc$east, nc$north)) sids.nhbr <- listw2sn(nb2listw(ncCC89, glist=sids.nhbr30.dist, style="B", zero.policy=TRUE)) dij <- sids.nhbr[,3] n <- nc$BIR74 el1 <- min(dij)/dij el2 <- sqrt(n[sids.nhbr$to]/n[sids.nhbr$from]) sids.nhbr$weights <- el1*el2 sids.nhbr.listw <- sn2listw(sids.nhbr) ################################################### ### code chunk number 42: sids.Rnw:594-595 ################################################### nc$ft.NWBIR74 <- sqrt(1000)*(sqrt(nc$NWBIR74/nc$BIR74) + sqrt((nc$NWBIR74+1)/nc$BIR74)) ################################################### ### code chunk number 43: sids.Rnw:602-609 ################################################### lm_nc <- lm(ft.SID74 ~ 1, data=nc) outl <- which.max(rstandard(lm_nc)) as.character(nc$names[outl]) W <- listw2mat(sids.nhbr.listw) W.4 <- W[-outl, -outl] sids.nhbr.listw.4 <- mat2listw(W.4) nc2 <- nc[!(1:length(nc$CNTY_ID) %in% outl),] ################################################### ### code chunk number 44: sids.Rnw:616-618 ################################################### ecarIaw <- spautolm(ft.SID74 ~ 1, data=nc2, listw=sids.nhbr.listw.4, weights=BIR74, family="CAR") summary(ecarIaw) ################################################### ### code chunk number 45: sids.Rnw:625-627 ################################################### ecarIIaw <- spautolm(ft.SID74 ~ both - 1, data=nc2, listw=sids.nhbr.listw.4, weights=BIR74, family="CAR") summary(ecarIIaw) ################################################### ### code chunk number 46: sids.Rnw:634-636 ################################################### ecarIVaw <- spautolm(ft.SID74 ~ ft.NWBIR74, data=nc2, listw=sids.nhbr.listw.4, weights=BIR74, family="CAR") summary(ecarIVaw) ################################################### ### code chunk number 47: sids.Rnw:641-642 ################################################### nc2$fitIV <- fitted.values(ecarIVaw) ################################################### ### code chunk number 48: sids.Rnw:644-645 (eval = FALSE) ################################################### ## spplot(nc2, "fitIV", cuts=12, col.regions=grey.colors(13, 0.9, 0.3)) ################################################### ### code chunk number 49: sids.Rnw:651-654 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") print(spplot(nc2, "fitIV", cuts=12, col.regions=grey.colors(13, 0.9, 0.3))) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 50: sids.Rnw:662-663 ################################################### ecarIawll <- spautolm(ft.SID74 ~ 1, data=nc2, listw=sids.nhbr.listw.4, weights=BIR74, family="CAR", llprof=seq(-0.1, 0.9020532358, length.out=100)) ################################################### ### code chunk number 51: ll_prof (eval = FALSE) ################################################### ## plot(ll ~ lambda, ecarIawll$llprof, type="l") ################################################### ### code chunk number 52: sids.Rnw:672-675 ################################################### .PngNo <- .PngNo + 1; file <- paste("Fig-bitmap-", .PngNo, ".pdf", sep="") pdf(file=file, width = 6.5, height = 3.5, pointsize = 12, bg = "white") opar <- par(mar=c(3,3,1,1)+0.1) plot(ll ~ lambda, ecarIawll$llprof, type="l") par(opar) dev.null <- dev.off() cat("\\includegraphics[width=0.95\\textwidth]{", file, "}\n\n", sep="") ################################################### ### code chunk number 53: sids.Rnw:683-685 ################################################### options("width"=owidth) options("warn"=ow) spdep/inst/doc/nb_igraph.html 0000644 0001762 0000144 00000215453 13152260204 015733 0 ustar ligges users
Since the spdep package was created, spatial weights objects have been constructed as lists with three components and a few attributes, in old-style class listw
objects. The first component of a listw
object is an nb
object, a list of n
integer vectors, with at least a character vector region.id
attribute with n
unique values (like the row.names
of a data.frame
object); n
is the number of spatial entities. Component i
of this list contains the integer identifiers of the neighbours of i
as a sorted vector with no duplication and values in 1:n
; if i
has no neighbours, the component is a vector of length 1
with value 0L
. The nb
object may contain an attribute indicating whether it is symmetric or not, that is whether i
is a neighbour of j
implies that j
is a neighbour of i
. Some neighbour definitions are symmetric by construction, such as contiguities or distance thresholds, others are asymmetric, such as k
-nearest neighbours. The nb
object redundantly stores both i
-j
and j
-i
links.
The second component of a listw
object is a list of n
numeric vectors, each of the same length as the corresponding non-zero vectors in the nb
object. These give the values of the spatial weights for each i
-j
neighbour pair. It is often the case that while the neighbours are symmetric by construction, the weights are not, as for example when weights are row-standardised by dividing each row of input weights by the count of neighbours or cardinality of the neighbour set of i
. In the nb2listw
function, it is also possible to pass through general weights, such as inverse distances, shares of boundary lengths and so on.
The third component of a listw
object records the style
of the weights as a character code, with "B"
for binary weights taking values zero or one (only one is recorded), "W"
for row-standardised weights, and so on. In order to subset listw
objects, knowledge of the style
may be necessary
It is obvious that this is similar to the way in which sparse matrices are stored, either by row - like the listw
object, or by column. The key insight is that storing zero values is unnecessary, as we only need to store the row and column locations of non-zero values. Early on, a Netlib library was used to provide limited support in spdep for sparse matrices, followed by functionality in SparseM, spam, and Matrix.
Since Matrix is a recommended package, its functionality has increasingly been used over time, and it has become one of two packages on which spdep depends. This is reported on loading:
library(spdep)
## Loading required package: sp
## Loading required package: Matrix
The legacy Columbus OH data set has 49 spatial entities, polygons, defined as the boundaries of policing districts in the city. spdep suggests maptools for portability, but in regular applications, rgdal should be used, because it handles coordinate reference systems more gracefully. We see that the shapefile-based entity IDs are zero-based:
library(maptools)
## Checking rgeos availability: TRUE
columbus <- readShapePoly(system.file("etc/shapes/columbus.shp", package="spdep")[1])
## Warning: use rgdal::readOGR or sf::st_read
row.names(columbus)[1:10]
## [1] "0" "1" "2" "3" "4" "5" "6" "7" "8" "9"
Contiguous neighbours are often used for polygonal spatial entities, here with the poly2nb function defaulting to the queen criterion - entities are neighbours if they share a boundary point. We see that the entity IDs are copied across to the nb
object:
nb_q <- poly2nb(columbus)
nb_q
## Neighbour list object:
## Number of regions: 49
## Number of nonzero links: 236
## Percentage nonzero weights: 9.829238
## Average number of links: 4.816327
attr(nb_q, "region.id")[1:10]
## [1] "0" "1" "2" "3" "4" "5" "6" "7" "8" "9"
is.symmetric.nb(nb_q)
## [1] TRUE
In order to make the object more complicated, let us drop the neighbour links for the 21st entity (noting that the print method reports the ID of the entity with no neighbours, not its number in 1:n
), and plot the resulting map of neighbours:
col2 <- droplinks(nb_q, 21)
nb_q[[21]]
## [1] 24 30 34
col2[[21]]
## [1] 0
col2
## Neighbour list object:
## Number of regions: 49
## Number of nonzero links: 230
## Percentage nonzero weights: 9.579342
## Average number of links: 4.693878
## 1 region with no links:
## 20
is.symmetric.nb(col2)
## [1] TRUE
coords <- coordinates(columbus)
plot(nb_q, coords, col="grey")
plot(col2, coords, add=TRUE)
At present only listw
objects can be coerced to objects of classes defined in Matrix. Because the style
is lost on coercion, it may not be possible to reconstruct spatial weights as the sparse matrix representation does not preserve it. We will start with symmetric binary weights, first creating a spatial weights object, and signalling that one entity has no neighbours with the zero.policy
argument (default false). The matrix and graph representations of no-neighbour entities are not obvious.
nb_B <- nb2listw(col2, style="B", zero.policy=TRUE)
nb_B$style
## [1] "B"
spdep provides coercion methods from listw
to the "symmetricMatrix"
, "RsparseMatrix"
and "CsparseMatrix"
classes defined in Matrix. The "RsparseMatrix"
is the representation that is most similar to listw
, as it is row-based, but it is used less frequently in operations on sparse matrices. The entity IDs are passed using sparse matrix row and column names at present. Here we believe that our listw
object can be represented as a symmetric matrix, storing only a triangle rather than both i
-j
and j
-i
weights. The coercion method does check whether symmetry is present before proceeding:
B <- as(nb_B, "symmetricMatrix")
all(B == t(B))
## [1] TRUE
str(B)
## Formal class 'dsTMatrix' [package "Matrix"] with 7 slots
## ..@ i : int [1:115] 0 0 1 1 2 2 3 3 4 4 ...
## ..@ j : int [1:115] 1 2 2 3 3 4 4 7 5 7 ...
## ..@ Dim : int [1:2] 49 49
## ..@ Dimnames:List of 2
## .. ..$ : chr [1:49] "0" "1" "2" "3" ...
## .. ..$ : chr [1:49] "0" "1" "2" "3" ...
## ..@ x : num [1:115] 1 1 1 1 1 1 1 1 1 1 ...
## ..@ uplo : chr "U"
## ..@ factors : list()
rownames(B)[1:10]
## [1] "0" "1" "2" "3" "4" "5" "6" "7" "8" "9"
Let us now try to retreive the list of neighbours from the symmetric sparse matrix. At present, we have to coerce from one Matrix internal representation to another in order to get to the "dgCMatrix"
format used inside mat2listw
, so we coerce to "dgTMatrix"
from "dsTMatrix"
. The style is not retreived automatically, but is set to "M"
to indicate conversion from a matrix. The neighbour links are retreived correctly, as are the IDs:
nb_B1 <- mat2listw(as(B, "dgTMatrix"))
## Warning in sn2listw(df): 20 is not an origin
nb_B1$style
## [1] "M"
all.equal(nb_B1$neighbours, col2, check.attributes=FALSE)
## [1] TRUE
all.equal(attr(nb_B1$neighbours, "region.id"), attr(nb_B$neighbours, "region.id"))
## [1] TRUE
An initial reason for implementing support for sparse weights matrices in spdep was to permit the calculation of the log determinant term in spatial regressions for larger data sets. Using the eigenvalue approach with for example eigenw
is limited by the need to operate on dense matrices in memory to solve the eigenproblem:
rho <- 0.1
sum(log(1 - rho * eigenw(nb_B)))
## [1] -1.44787
When n
is large, this may become impractical and/or time-consuming, but does permit the rapid calculation of values of the log determinant for differing values of the spatial coefficient \( \rho \). The Matrix package provides many determinant
methods, here for a "dsCMatrix"
resulting from subtracting a "dsCMatrix"
, the product of a scalar and a "dsTMatrix"
, from a "ddiMatrix"
. The value of the log determinant follows, calling a sparse Cholesky decomposition internally for suitable input matrices.
n <- nrow(B)
I <- Diagonal(n)
class(I - rho * B)
## [1] "dsCMatrix"
## attr(,"package")
## [1] "Matrix"
c(determinant(I - rho * B, logarithm=TRUE)$modulus)
## [1] -1.44787
The computation of a sparse Cholesky decomposition for each value of the spatial coefficient \( \rho \) may be avoided by updating a pre-computed object; this approach provides fast and accurate log determinants for larger (but not very large) data sets:
nW <- -B
nChol <- Cholesky(nW, Imult=8)
n * log(rho) + (2 * c(determinant(update(nChol, nW, 1/rho))$modulus))
## [1] -1.44787
The use of row-standardisation leads to asymmetry even if the underlying neighbours are symmetric, unless all entities have matching numbers of neighbours (for example a regular grid on a torus):
nb_W <- nb2listw(col2, style="W", zero.policy=TRUE)
W <- as(nb_W, "CsparseMatrix")
str(W)
## Formal class 'dgCMatrix' [package "Matrix"] with 6 slots
## ..@ i : int [1:230] 1 2 0 2 3 0 1 3 4 1 ...
## ..@ p : int [1:50] 0 2 5 9 13 21 23 27 33 41 ...
## ..@ Dim : int [1:2] 49 49
## ..@ Dimnames:List of 2
## .. ..$ : chr [1:49] "0" "1" "2" "3" ...
## .. ..$ : chr [1:49] "0" "1" "2" "3" ...
## ..@ x : num [1:230] 0.333 0.25 0.5 0.25 0.25 ...
## ..@ factors : list()
all(W == t(W))
## [1] FALSE
The lag
method for listw
objects is often used to create spatially lagged values, and returns the same values as the vector given by the product of the sparse general matrix and an input numeric vector. Note that by setting zero.policy
to TRUE
, the spatial lag of entity 21, which has no neighbours, is zero by construction:
set.seed(1)
x <- runif(n)
r1 <- as.numeric(W %*% x)
r2 <- lag(nb_W, x, zero.policy=TRUE)
all.equal(r1, r2, check.attributes=FALSE)
## [1] TRUE
plot(x, r1, ylim=c(0,1))
c(x[21], r1[21])
## [1] 0.9347052 0.0000000
Calculating the log determinant for asymmetric weights (here with symmetric neighbours and symmetry induced by non-constant numbers of neighbours) may be carried out using eigenvalues as before, but the result may be a complex vector (here it is not, as discussed below). The appropriate determinant
method for "dgCMatrix"
objects uses an LU decomposition internally:
rho <- 0.5
sum(log(1 - rho * eigenw(nb_W)))
## [1] -1.594376
class(I - rho * W)
## [1] "dgCMatrix"
## attr(,"package")
## [1] "Matrix"
c(determinant(I - rho * W, logarithm=TRUE)$modulus)
## [1] -1.594376
We can show the internal workings of the method as:
LU <- lu(I - rho * W)
sum(log(abs(diag(slot(LU, "U")))))
## [1] -1.594376
The nb2listw
function stores components that can be employed to transform the asymmetric weights matrix to symmetry by similarity, permitting the same log determinant to be computed using less costly numerical methods. The "W"
style used the cardinalities of neighbour sets (row sums) to introduce row standardisation, and they are stored as an attribute:
d <- attr(nb_W$weights, "comp")$d
all.equal(d, card(col2))
## [1] TRUE
If we first restore the row-standarised matrix to its binary form (which must be symmetric), we can pre- and post-multiply by the square roots of the inverted neighbour counts, yielding a symmetric matrix with the appropriate properties:
dW <- Diagonal(n, d) %*% W
all(dW == t(dW))
## [1] TRUE
isd <- Diagonal(n, 1/sqrt(d))
isd[21,21]
## [1] Inf
Ws <- as(isd %*% dW %*% isd, "symmetricMatrix")
rowSums(Ws)[21]
## 20
## 0
class(Ws)
## [1] "dsCMatrix"
## attr(,"package")
## [1] "Matrix"
c(determinant(I - rho * Ws, logarithm=TRUE)$modulus)
## [1] -1.594376
As can be seen, the division by the square root of zero for entity 21 is not a problem as the row of dW
is zero. The transformation by similarity permits the use of numerical methods for sparse symmetric matrices (and equivalently for eigenvalues and dense matrices). Note that this transformation is not available for intrinsically asymmetric neighbours, or for intrinsically asymmetric general weights.
arpack
in igraph for finding some eigenvaluesIn spatial regression, the domain of the spatial coefficient is given by the inverse of the maximum and minimum eigenvalues. When n
is moderate, we have the eigenvalues anyway, so the interval for line search is available without extra effort. When n
is somewhat larger, use may be made of the arpack
function in igraph. The function is not stable and requires manual tuning, so its use is commented out here:
1/range(eigenw(nb_B))
## [1] -0.3212551 0.1638329
library(igraph)
##
## Attaching package: 'igraph'
## The following objects are masked from 'package:stats':
##
## decompose, spectrum
## The following object is masked from 'package:base':
##
## union
#f2 <- function(x, extra=NULL) {as.vector(B %*% x)}
#1/arpack(f2, sym=TRUE, options=list(n=n, nev=1, ncv=8, which="LA", maxiter=200))$values
#1/arpack(f2, sym=TRUE, options=list(n=n, nev=1, ncv=8, which="SA", maxiter=200))$values
# At line 409 of file dsaupd.f: Fortran runtime error: Actual string
# length is shorter than the declared one for dummy argument 'which' (0/2)
#1/arpack(f2, sym=TRUE, options=list(n=n, nev=2, ncv=8, which="BE", maxiter=200))$values
# "BE" gives: At line 558 of file dsaup2.f: Fortran runtime error:
# Index '9' of dimension 1 of array 'bounds' above upper bound of 8
In this case, the results are trivial with small n
and a symmetric sparse matrix. It can be challenging to find the maxiter=
cutoff for larger n
; the which="BE"
argument takes both ends here.
1/range(eigenw(nb_W))
## [1] -1.544645 1.000000
f2 <- function(x, extra=NULL) {as.vector(W %*% x)}
#1/arpack(f2, sym=FALSE, options=list(n=n, nev=1, ncv=8, which="LR", maxiter=200))$values
#1/arpack(f2, sym=FALSE, options=list(n=n, nev=1, ncv=8, which="SR", maxiter=200))$values
# At line 409 of file dsaupd.f: Fortran runtime error: Actual string
# length is shorter than the declared one for dummy argument 'which' (0/2)
For asymmetric matrices, we need to go to each end separately, so finding the domain bounds can be hard. Using row-standardisation has the nice feature of setting the upper bound to unity, and there are graph methods for finding out whether the lower bound is -1
.
First we'll see how to get from sparse matrices to graphs. The mode of a symmetric matrix is "undirected"
by definition:
class(B)
## [1] "dsTMatrix"
## attr(,"package")
## [1] "Matrix"
object.size(B)
## 9040 bytes
library(igraph)
g1 <- graph.adjacency(B, mode="undirected")
class(g1)
## [1] "igraph"
object.size(g1)
## 8664 bytes
We can also convert this graph pack to the same matrix, but note that get.adjacency
chooses a particular class of sparse matrix to be returned, so that the conversion process typically leads many matrices to fewer graph types, and back to fewer matrix types:
B1 <- get.adjacency(g1)
class(B1)
## [1] "dgCMatrix"
## attr(,"package")
## [1] "Matrix"
object.size(B1)
## 9944 bytes
all.equal(B, as(as(B1, "dgTMatrix"), "symmetricMatrix"))
## [1] TRUE
A simple example of using igraph to do the same as an existing spdep function is Nicholas Lewin-Koh's n.comp.nb
from the early days of the package. It is useful to know whether an nb
object is divided up into separate subgraphs, and which entities are members of which such subgraph.
res <- n.comp.nb(col2)
table(res$comp.id)
##
## 1 2 3
## 42 1 6
The same result can be obtained using the clusters
function in igraph:
c1 <- clusters(g1)
c1$no == res$nc
## [1] TRUE
all.equal(c1$membership, res$comp.id)
## [1] "names for target but not for current"
all.equal(c1$csize, c(table(res$comp.id)), check.attributes=FALSE)
## [1] TRUE
The same holds for the row-standardised variant:
W <- as(nb2listw(col2, style="W", zero.policy=TRUE), "CsparseMatrix")
g1W <- graph.adjacency(W, mode="directed", weighted="W")
c1W <- clusters(g1W)
all.equal(c1W$membership, res$comp.id)
## [1] "names for target but not for current"
Finding shortest paths between spatial entities across a given graph is a way to express closeness. If the graph is connected, that is that it is possible to traverse the graph edges from any node to any other, the longest shortest path is then a useful measure. In igraph, the is.connected
function tells us tells us that our graph is not connected, as we know from the figure above. The diameter measure is then the diameter of the largest component subgraph. Note that this generates an n
x n
matrix:
is.connected(g1)
## [1] FALSE
dg1 <- diameter(g1)
dg1
## [1] 7
sp_mat <- shortest.paths(g1)
str(sp_mat)
## num [1:49, 1:49] 0 1 1 2 2 3 4 3 3 4 ...
## - attr(*, "dimnames")=List of 2
## ..$ : chr [1:49] "0" "1" "2" "3" ...
## ..$ : chr [1:49] "0" "1" "2" "3" ...
If we do the same in spdep, using nblag
to a maximum number of lag orders - the diameter, but which is unknown in advance (the largest lag order for which the number of links is greater than zero), we run into the problem of how to represent missing neighbour information.
nbl10 <- nblag(col2, maxlag=10)
vals <- sapply(nbl10, function(x) sum(card(x)))
zero <- which(vals == 0)
zero[1]-1
## [1] 7
If we insert zero into the weights matrix where there is no connection using zero.policy=TRUE
, we generate a zero shortest path. If we are to create a matrix that matches the one produced by shortest.paths
, we need to set all these non-structural zeros to infinity (the length of the path between unconnected nodes), and re-instate structural zeros on the diagonal:
lmat <- lapply(nbl10[1:(zero[1]-1)], nb2mat, style="B", zero.policy=TRUE)
mat <- matrix(0, n, n)
for (i in seq(along=lmat)) mat = mat + i*lmat[[i]]
mat[mat==0] <- Inf
diag(mat) <- 0
all.equal(mat, sp_mat, check.attributes=FALSE)
## [1] TRUE
Another area in which a graph representation might prove useful is in trying to establish the domain of the spatial coefficient when spatial weights are row-standardised. In that case by construction we know that the maximum eigenvalue is 1. If there are multiple blocks, that is graph components, where the numbers of nodes per block are greater than 1, then each will have a maximum eigenvalue of 1. The remaining problems are the numbers of zero eigenvalues (at least the singleton graph components), and whether any non-singleton component fulfills the condition termed by Smirnov and Anselin (2009) a cyclical matrix, for which the minimum eigenvalue is -1. The term cyclical appears to be used in many different ways, and it is not clear that its use here after Smirnov and Anselin (2009, pp. 2984-2985) indicates which meaning should be used to find the relevant graph function. The definition used here is that a block matrix (subgraph) is cyclical if: “for every location, every pair of its neighbours are not connected.” That is, if w[i,j] and w[i,k] are greater than zero, w[j,k] must be zero to meet the condition.
The internal function find_q1_q2 returns the number of non-singleton components, and the number of these that meet this condition. It does this for each block/subgraph by testing the condition until it meets w[j,k] > 0, at which point it breaks. Smirnov and Anselin (2009) state that rook neighbours on a regular grid meet the condition:
nb_r <- cell2nb(7, 7, type="rook")
nb_rW <- nb2listw(nb_r, style="W")
spdep:::find_q1_q2(nb_rW)
## [1] 1 1
One block/graph component is found, and this one meets the cyclical matrix condition, as also shown by the domain:
1/range(Re(eigenw(similar.listw(nb_rW))))
## [1] -1 1
This does not apply to the spatial weights we have been using above, with two non-singleton components, neither meeting the cyclical matrix condition:
spdep:::find_q1_q2(nb_W)
## [1] 2 0
1/range(Re(eigenw(similar.listw(nb_W))))
## [1] -1.544645 1.000000
By construction, all two-node connected graph components also meet the condition, as the eigenvalues sum to zero, and the maximum is unity, so the minimum must be -1.
spdep/inst/doc/backstore/ 0000755 0001762 0000144 00000000000 12161056000 015053 5 ustar ligges users spdep/inst/doc/backstore/boot_res.RData 0000644 0001762 0000144 00000002236 11716033162 017620 0 ustar ligges users m{LSw/--