debian/0000755000000000000000000000000011704070416007166 5ustar debian/patches/0000755000000000000000000000000011704070416010615 5ustar debian/source/0000755000000000000000000000000011704070416010466 5ustar debian/source/format0000644000000000000000000000001411701076661011701 0ustar 3.0 (quilt) debian/librg-reprof-bundle-perl.install0000644000000000000000000000006411704050666015364 0ustar usr/share/perl5 usr/share/reprof usr/share/man/man3 debian/control0000644000000000000000000000322711703256440010577 0ustar Source: reprof Section: science Priority: extra Maintainer: Debian Med Packaging Team Uploaders: Peter Hoenigschmid , Laszlo Kajan Build-Depends: debhelper (>= 7.0.50~), autotools-dev Standards-Version: 3.9.2 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/reprof/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/reprof/trunk/ DM-Upload-Allowed: yes Homepage: http://rostlab.org/ Package: reprof Architecture: all Depends: ${perl:Depends}, ${misc:Depends}, librg-reprof-bundle-perl Recommends: pp-popularity-contest Description: protein secondary structure and accessibility predictor 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the 'reprof' command. It is only a command line interface to the functionality provided by the modules in librg-reprof-bundle-perl. Package: librg-reprof-bundle-perl Section: perl Architecture: all Depends: ${perl:Depends}, ${misc:Depends}, libai-fann-perl Description: protein secondary structure and accessibility predictor 'reprof' is an improved implementation of 'prof', a popular protein secondary structure and accessibility predictor. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . This package provides the perl modules implementing 'reprof' along with the necessary data files. debian/copyright0000644000000000000000000000261511701112476011125 0ustar This work was packaged for Debian by: Peter Hoenigschmid on Fri, 16 Dec 2011 16:44:22 +0100 It was downloaded from: ftp://rostlab.org/reprof/ Upstream Authors: Peter Hoenigschmid Burkhard Rost Copyright: Copyright (C) 2011 Peter Hoenigschmid, Technical University of Munich, Germany Copyright (C) 2011 Burkhard Rost, Technical University of Munich, Germany License: This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . On Debian systems, the complete text of the GNU General Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'. The Debian packaging is: Copyright (C) 2011 Peter Hoenigschmid and is licensed under the GPL version 3, see "/usr/share/common-licenses/GPL-3". debian/changelog0000644000000000000000000000044011704067707011047 0ustar reprof (1.0.1-1) unstable; urgency=low * New upstream release -- Laszlo Kajan Fri, 13 Jan 2012 16:43:02 +0100 reprof (1.0.0-1) unstable; urgency=low * Initial release (Closes: #655336) -- Laszlo Kajan Fri, 16 Dec 2011 16:44:22 +0100 debian/reprof.install0000644000000000000000000000011111701325276012050 0ustar usr/bin/reprof usr/share/man/man1/reprof.1 usr/share/doc/reprof/examples debian/watch0000644000000000000000000000012011703263646010220 0ustar version=3 ftp://rostlab.org/reprof/reprof-([0-9.]*)\.tar\.gz debian uupdate debian/rules0000755000000000000000000000024111703263646010253 0ustar #!/usr/bin/make -f # -*- makefile -*- # Uncomment this to turn on verbose mode. export DH_VERBOSE=1 %: dh $@ override_dh_compress: dh_compress -Xexample.Q debian/compat0000644000000000000000000000000211701076662010372 0ustar 7