debian/0000755000000000000000000000000012152416556007175 5ustar debian/control0000644000000000000000000000230612152416520010570 0ustar Source: mgltools-molkit Section: non-free/science Priority: optional Maintainer: Debian Med Packaging Team XS-Autobuild: yes Uploaders: Steffen Moeller , Sargis Dallakyan , Andreas Tille , Thorsten Alteholz Build-Depends: debhelper (>= 8), python-all (>= 2.6), python-numpy, swig Standards-Version: 3.9.4 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/molkit/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mgltools/molkit/trunk/ Homepage: http://mgltools.scripps.edu/ Package: mgltools-molkit Architecture: all Depends: ${misc:Depends}, ${python:Depends}, mgltools-pybabel, mgltools-dejavu, mgltools-bhtree, mgltools-sff, python-numpy Recommends: mgltools-cmolkit Suggests: pdb2pqr Description: Python classes to read and manipulate molecules This package is part of the mgltools set of Python libraries which provide an infrastructure for the analysis of protein structures and their docking of chemical compounds. . It provides a series of functions to calculate properties of protein structures and allows performing local modifications. debian/copyright0000644000000000000000000001641512152154546011135 0ustar This package was debianized by Steffen Moeller on Sun, 20 Jul 2008 10:24:55 +0200. It was downloaded from http://mgltools.scripps.edu Upstream Authors: The main development is performed by the researchers and developers at the Molecular Graphics Laboratory led by Michael F. Sanner with contributions by Ruth Huey Michael F. Sanner Anna Omelchenko William M. Lindstrom Kevin Chan Sophie COON Sowjanya Karnati Garrett M. Morris Sargis Dallakyan Daniel Stoffler External contributors for pdb2pqr which is also available on http://sourceforge.net/projects/pdb2pqr are Jens Erik Nielsen Todd Dolinsky Nathan A. Baker David J. Heisterberg Mike Bradley and the subpackage propka is contributed by HUI LI ANDREW D. ROBERTSON JAN H. JENSEN TODD DOLINSKY which again comprises external contributions fro Michael Holst MALOC is written by Michael Holst pdb2pqr/config/compile is written by Tom Tromey Copyright: The respective authors and the Scripps Research Institute Copyright 1992-2013 Michael Sanner PDB2PQR is Copyrigth (C) Jens Erik Nielsen 2002-2003, UCSD/HHMI and Copyright (c) 2002-2007. Washington University in St. Louis. Dept. of Biochemistry and Molecular Biophysics Center for Computational Biology Washington University in St. Louis MALOC = < Minimal Abstraction Layer for Object-oriented C > is Copyright (C) 1994--2000 Michael Holst pdb2pqr/config/compile is Copyright 1999, 2000 Free Software Foundation, Inc. Written by Tom Tromey . pdb2pqr/config/ltconfig is copyright (C) 1996-1999 Free Software Foundation, Inc. Originally by Gordon Matzigkeit , 1996 pdb2pqr/config/missing is copyright 1996, 1997, 1999, 2000 Free Software Foundation, Inc. Originally by Fran,cois Pinard , 1996. License: All files distributed or redistributed in this package are subject to the here presented license, regardless of the information that is explicitly stated or omitted in the respective files themselves. The original copyright holders have made respective agreements regarding this redistribution. 1. Grant Of Limited License; Software Use Restrictions. The programs received by you will be used only for NON COMMERCIAL purposes. This license is issued to you as an individual. For COMMERCIAL use done with the software please contact Michel F. Sanner for details about commercial usage license agreements. For any question regarding license agreements, please contact Michel Sanner: TSRI, Molecular Biology Department, TCP 26, 10550 North Torrey Pines Road, La Jolla, CA 92037 sanner@scripps.edu tel (858) 784-7742 fax (858) 784-2341 2. COMMERCIAL USAGE is defined as revenues generating activities. These include using this software for consulting activities and selling applications built on top of, or using this software. Scientific research in an academic environment and teaching are considered NON COMMERCIAL. 3. Copying Restrictions. You will not sell or otherwise distribute commercially these programs or derivatives to any other party, whether with or without consideration. 4. Ownership of Software. You will not obtain, and will not attempt to obtain copyright coverage thereon without the express purpose written consent of The Scripps Research Institute and Dr. Sanner. 5. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 6. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. PDB2PQR is distributed under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. Comment by the package maintainer: it should however be noted, that recently upstream has changed their license to a more liberal license. PDB2PQR is currently being packaged for Debian, however there seems an incompatiblity to prevail and thus this separate package continues to be distributed with the mgltools. MALOC and pdb2pqr/config/compile come with the GPL license of version two or higher: This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ee the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA The Debian packaging is Copyright (C) 2007-2008, Steffen Moeller and is licensed under the GPL, see '/usr/share/common-licenses/GPL-2'. In addition to the license above, the Debian project also got the explicit permission from the copyright owner to distribute the software: Date: Mon, 20 May 2013 10:07:13 -0700 From: Michel Sanner To: Thorsten Alteholz Cc: "annao >> Anna Omelchenko" Subject: Re: mgltools license Hello Thorsten Sorry for not following up this earlier. We are delighted to have Debian include the MGLTools in their distribution. So you need us to amend the License text or will this email suffice ? Thanks -- ----------------------------------------------------------------------- o / Michel F. Sanner Ph.D. The Scripps Research Institute o Associate Professor Department of Molecular Biology \ 10550 North Torrey Pines Road o Tel. (858) 784-7742 La Jolla, CA 92037, TPC 26 / Fax. (858) 784-2341 o sanner@scripps.edu http://www.scripps.edu/~sanner ----------------------------------------------------------------------- debian/changelog0000644000000000000000000000744012152416520011043 0ustar mgltools-molkit (1.5.7~rc1~cvs.20130519-1) unstable; urgency=low * New upstream version. * debian/copyright: use GPL-2 instead of GPL as licence for debian/* files * debian/copyright: add permission for debian to distribute mgltools * debian/control: bump standard to 3.9.4 (no changes) * debian/control: remove DM-Upload-Allowed * debian/control: add swig to build dependencies -- Thorsten Alteholz Sun, 19 May 2013 12:00:00 +0200 mgltools-molkit (1.5.6~rc3~cvs.20120206-1) unstable; urgency=low * New upstream version. * debian/control: vcs fields corrected -- Thorsten Alteholz Mon, 06 Feb 2012 18:00:00 +0100 mgltools-molkit (1.5.6~rc2+cvs.20111222-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Thu, 22 Dec 2011 17:10:09 +0100 mgltools-molkit (1.5.6~rc2+cvs.20110926-1) unstable; urgency=low * New upstream version (lp: #651832). -- Steffen Moeller Fri, 17 Jun 2011 01:20:19 +0200 mgltools-molkit (1.5.6~rc1+cvs.20110617-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Fri, 17 Jun 2011 01:20:19 +0200 mgltools-molkit (1.5.6~rc1+cvs.20110615-1) unstable; urgency=low * New upstream version. * lintian overrides for source package now belong to debian/source/lintian-overrides * debian/control: added myself to Uploaders: * debian/copyright: word 'copyright' is needed now * debian/README.Debian: spelling corrected * dep header added to patches -- Thorsten Alteholz Wed, 15 Jun 2011 21:43:38 +0200 mgltools-molkit (1.5.4.cvs.20100912-2) unstable; urgency=low * Debhelper 8 (control+compat) * debian/control: - Build-Depends: python-all (>= 2.6) to enable python-support2 Closes: #616892 * debian/rules: switch to short dh syntax which makes dh_python2 easy * debian/lintian-overrides: Do not warn about outdated autotools files because these are not used in the build process -- Andreas Tille Wed, 04 May 2011 16:08:37 +0200 mgltools-molkit (1.5.4.cvs.20100912-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Sun, 12 Sep 2010 00:20:31 +0200 mgltools-molkit (1.5.4.cvs.20090603-1.1) unstable; urgency=low * Non-maintainer upload. * Build for all supported Python versions, add fix_import_star.patch (closes: #586841) * Add fix_string_exceptions.patch (closes: #585251) * Architecture changed to all -- Piotr Ożarowski Wed, 30 Jun 2010 21:55:04 +0200 mgltools-molkit (1.5.4.cvs.20090603-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Wed, 03 Jun 2009 11:48:21 +0200 mgltools-molkit (1.5.4.cvs.20090528-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Sat, 16 May 2009 00:51:25 +0200 mgltools-molkit (1.5.4.cvs.20090514-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Thu, 14 May 2009 21:46:35 +0200 mgltools-molkit (1.5.4.cvs.20081126-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Wed, 26 Nov 2008 14:43:13 +0100 mgltools-molkit (1.5.2.cvs.20081109-2) unstable; urgency=low * Fix: corrected address of FSF in copyright * Fix: this package is architecture dependent. -- Steffen Moeller Thu, 13 Nov 2008 14:11:10 +0100 mgltools-molkit (1.5.2.cvs.20081109-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Sun, 09 Nov 2008 15:02:33 +0100 mgltools-molkit (1.5.2.cvs.20080731-1) unstable; urgency=low * Initial release, contributes to closing ITP #458811. -- Steffen Moeller Thu, 31 Jul 2008 21:59:59 +0200 debian/compat0000644000000000000000000000000211560262300010357 0ustar 8 debian/watch0000644000000000000000000000012511041154457010217 0ustar version=3 http://mgltools.scripps.edu/downloads/.*mgltools_source_([0-9.]+)\.tar\.gz debian/get-orig-source/0000755000000000000000000000000012152416556012210 5ustar debian/get-orig-source/rc-version0000644000000000000000000000000512146202375014210 0ustar ~rc1 debian/get-orig-source/current-branch0000644000000000000000000000001112146202375015033 0ustar rc-1-5-7 debian/get-orig-source/get-orig-source0000755000000000000000000000555712145665571015172 0ustar #!/bin/bash # # usage: get-orig-source # e.g.: get-orig-source VolumeDIST rc-1-5-6 ~rc1 # package=$1 branch=$2 rcversion=$3 REMOTECVSROOT=:pserver:anonymous@mgl1.scripps.edu:2401/opt/cvs CVS=/usr/bin/cvs MGLTOOLSCVS=../../mgltools-cvs # Expected by svn-buildpackage as 'tarballs' TARDIR=../tarballs PREFIX="mgltools-" if [ "$package" == "AutoDockToolsDIST" ]; then PREFIX="" fi DEBPACKAGE=$PREFIX`echo $package|sed "s/DIST//g"| tr 'A'-'Z' 'a'-'z'` # do some stuff echo "I: get $package (-> $DEBPACKAGE) from branch $branch" loginDone=`grep "$REMOTECVSROOT" ~/.cvspass|wc -l` if [ "$loginDone" == "0" ]; then $CVS -d$REMOTECVSROOT login fi if [ -d "$MGLTOOLSCVS" ]; then echo "I: cvs directory already available" else echo "I: create directory '$MGLTOOLSCVS' to store new CVS checkout" mkdir "$MGLTOOLSCVS" fi if [ -d $MGLTOOLSCVS/$package ]; then echo "I: ... checkout already done" if [ -r "$MGLTOOLSCVS/$package/CVS/Tag" ]; then echo "W: check whether this is the correct tag: `cat $MGLTOOLSCVS/$package/CVS/Tag`" else echo "W: no tag file found. You may be working on the trunk, not on the release branch. Is that what you want?" fi sleep 3 (cd $MGLTOOLSCVS/$package && $CVS -z3 update -d) else echo "I: ... now performing checkout" (cd "$MGLTOOLSCVS" && $CVS -z3 -d$REMOTECVSROOT co -r $branch $package) fi version=`echo $branch|sed "s/rc-//g"|tr '-' '.'` DATE=`date +"%Y%m%d"` if [ -f $MGLTOOLSCVS/build-for-date ]; then DATE=`cat $MGLTOOLSCVS/build-for-date` fi if [ -z ${rcversion} ]; then echo "I: no rc but real release" origFilename=${DEBPACKAGE}_${version}${rcversion}.orig.tar.gz origDirname=${DEBPACKAGE}-${version}${rcversion} else origFilename=${DEBPACKAGE}_${version}${rcversion}~cvs.${DATE}.orig.tar.gz origDirname=${DEBPACKAGE}-${version}${rcversion}~cvs.${DATE} fi echo "I: Filename of origFile: $origFilename" cd "$MGLTOOLSCVS" if [ -d "$TARDIR" ]; then echo "I: directory for orig tarballs already available" else echo "I: creating directory for irog tarballs: '$TARDIR'" mkdir "$TARDIR" fi if [ -f "$TARDIR"/"$origFilename" ]; then echo "I: delete old file '$origFilename' " rm "$TARDIR"/"$origFilename" fi if [ -n "$origDirname" -a -d "$origDirname" ]; then echo "W: Amazingly, temporary directory name '$origDirname' is already existing. Stop this script if this shall not be removed -- within 3 seconds." sleep 3 rm -r "$origDirname" fi echo "I: remove some files in '$package' " cd $package echo "I: ... *.dll " find . -name *.dll -a -type f| xargs -r rm -rf cd .. echo "I: Temporarily renaming and taring $package " echo " --> $MGLTOOLSCVS/$TARDIR/$origFilename" mv "$package" "$origDirname" echo -n "I: Number of files in package: " GZIP=-9 tar --exclude CVS -czvf "$TARDIR/$origFilename" "$origDirname" | wc -l mv "$origDirname" "$package" echo "I: done" debian/get-orig-source/README0000644000000000000000000000066611600144512013063 0ustar This directory contains all scripts/data/whatsoever to automatically build mgltools-packages. Using svn externals, this directory appears in the debian directory of each package. So in case you need to change anything (like the branch to be used), there is only one place to make the modifications. Command in trunk/debian: svn propset svn:externals \ '^/trunk/packages/mgltools/mgltools-external-get-orig-source get-orig-source' . debian/get-orig-source/rc-version.ok0000644000000000000000000000000512145647165014631 0ustar ~rc3 debian/patches/0000755000000000000000000000000012152416556010624 5ustar debian/patches/fix_import_star.patch0000644000000000000000000000175411573460123015060 0ustar Description: Build for all supported Python versions Author: Piotr Ożarowski Last-Update: 2010-06-30 Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/ligand_topology.py =================================================================== --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/ligand_topology.py +++ mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/ligand_topology.py @@ -384,11 +384,10 @@ class get_ligand_topology: # # Reformat the lists of lists of lists of ... that we get from the ring detection # - from types import * - if type(item) is ListType: + if isinstance(item, (list, tuple)): real_list=[] for sub_item in item: - if not type(sub_item) is ListType: + if not isinstance(sub_item, (list, tuple)): real_list.append(sub_item) else: self.get_items(sub_item) debian/patches/series0000644000000000000000000000006211413155474012035 0ustar fix_string_exceptions.patch fix_import_star.patch debian/patches/fix_string_exceptions.patch0000644000000000000000000001057411573460123016264 0ustar Description: use 'raise exception()' instead of simple 'raise' Author: Piotr Ożarowski Last-Update: 2010-06-30 Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/NEWligand_topology.py =================================================================== --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/NEWligand_topology.py +++ mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/NEWligand_topology.py @@ -405,7 +405,7 @@ class get_ligand_topology: self.biglist.append(real_list) return else: - raise 'this should not happen' + raise Exception('this should not happen') # # ----- Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/inputgen_pKa.py =================================================================== --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/inputgen_pKa.py +++ mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/inputgen_pKa.py @@ -136,7 +136,9 @@ class inputGen: # # Not a known type # - raise 'unknown type',type + # TODO: Exception() is used here instead of TypeError for backwards compatibility, fix it once sure that no TypeError is fine + #raise TypeError('unknown type',type) + raise Exception('unknown type',type) return def getText_sub(self): @@ -165,7 +167,7 @@ class inputGen: text += " nlev 4\n" else: - raise 'unknown method' + raise Exception('unknown method') # text += " mol 1\n" text += " lpbe\n" @@ -214,7 +216,7 @@ class inputGen: # # Eh? # - raise 'type not set' + raise Exception('type not set') # # ------ Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/ligand_topology.py =================================================================== --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/ligand_topology.py +++ mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/ligand_topology.py @@ -399,7 +399,7 @@ class get_ligand_topology: self.biglist.append(real_list) return else: - raise 'this should not happen' + raise Exception('this should not happen') # # ----- Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/ligandclean/ligff.py =================================================================== --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/ligandclean/ligff.py +++ mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/ligandclean/ligff.py @@ -354,7 +354,7 @@ class ligand_charge_handler(MOL2MOLECULE if BondiiRadiiDict.has_key(ele): radius = BondiiRadiiDict[ele] else: - raise 'radius not known for',ele + raise Exception('radius not known for',ele) # # Store the radii and charges # Index: mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/pka.py =================================================================== --- mgltools-molkit-1.5.4.cvs.20090603.orig/MolKit/pdb2pqr/pdb2pka/pka.py +++ mgltools-molkit-1.5.4.cvs.20090603/MolKit/pdb2pqr/pdb2pka/pka.py @@ -867,7 +867,7 @@ class pKaRoutines: if abs(totphi)<0.01 or abs(totcrg)<0.01: print 'total abs phi',totphi print 'total abs crg',totcrg - raise 'Something is rotten' + raise Exception('Something is rotten') print print return energy @@ -1071,7 +1071,7 @@ class pKaRoutines: # if get_neutral_state: if not neutral_state: - raise "no neutral state for",residue.resSeq + raise Exception("no neutral state for",residue.resSeq) return neutral_state # # Make sure that the charges add up to integers by adding extra atoms @@ -1129,7 +1129,7 @@ class pKaRoutines: if added is None and sum>0.001: print sum print atomnames - raise 'Could not find integer charge state' + raise Exception('Could not find integer charge state') return atomnames # debian/README.Debian0000644000000000000000000000330711560262300011225 0ustar autodocktools and other modules of MGLtools for Debian ====================================================== This package aims at providing the complete infrastructure for ligand screening with Debian Linux. It is part of the MGL (Molecular Graphics Labs at Scripps) Python tools set for the computational and visual interaction of protein structures and their ligands. The Debian community shall thank Sargis Dallakyan for his help in easing the compatibility with Debian by accepting our patches and providing more himself. Also, the leader of the Molecular Graphics Labs, Prof. Michael Sanner, is thanked for his support. Please be continuously reminded that that closer a software gets towards identifying or further describing functional compounds in medicine, the harder it is to get access to free (as in beer) solutions. And it certainly does not get much closer than with the AutoDockToolkit. To have the AutoDockToolkit with Debian is special and good for the world as it spawns the development of new drugs. We will need to wait a bit longer for a DFSG compatible license, though. If you are a regular user of this package, your feedback to us packagers would much appreciated. The packaging is organised via the Debian-Med alioth project that has its own portal on http://debian-med.alioth.debian.org. This MolKit package has a few issues with the pdb2pqr conversion tool that it ships with it. That tool however is currently being packaged for Debian independently from this effort and the expectation is that the sources for this package will be simplified respectively once that this other package hits the mirrors. -- Steffen Moeller Sun, 20 Jul 2008 00:33:11 +0200 debian/README.source0000644000000000000000000000155211040465741011352 0ustar Any package of the MGLtools suite ================================= The URL presented in debian/watch guides to a tar file as the source distribution of the MGLtools set. That tar file has a subdirectory MGLPACKS that comprises many tar files itself, each representing a distinguished Python module. For the packaging of the AutoDockTool kit, the maintainers have decided to package each module individually, to foster the collaboration between similar applications. The maintainers of the Debian package may decide to release interim version from the upstream CVS source repository, instead of waiting for an official release by the upstream developers. For further details on how to prepare the source for the packaging, please refer to http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/BUILD?op=file&rev=0&sc=0 -- Steffen Moeller debian/rules0000755000000000000000000000144211600425310010237 0ustar #!/usr/bin/make -f # -*- makefile -*- # debian/rules for mgltools-molkit # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 BRANCH=`cat debian/get-orig-source/current-branch` RCVERSION=`cat debian/get-orig-source/rc-version` SRC=MolKitDIST PYVERS := $(shell pyversions -vs) %: dh $@ --with python2 ## No need for this, outdated files are not used in build process ## --with autotools-dev override_dh_clean: dh_clean find . -name CVS -a -type d| xargs -r rm -r rm -rf build build-stamp find . -name .cvsignore | xargs -r rm override_dh_install: dh_install # this file is not needed and gives a lintian warning, so go away find debian -name inputgen_pKa.py -a -type f| xargs -r rm -r get-orig-source: ./debian/get-orig-source/get-orig-source $(SRC) $(BRANCH) $(RCVERSION) debian/mgltools-molkit.lintian-overrides0000644000000000000000000000016511573460123015707 0ustar # the license is in debian/copyright but upstream wants to have it there as well mgltools-molkit: extra-license-file debian/source/0000755000000000000000000000000012152416556010475 5ustar debian/source/format0000644000000000000000000000001411443176034011677 0ustar 3.0 (quilt) debian/source/lintian-overrides0000644000000000000000000000031511573460123014050 0ustar # These outdated autotools files are not used in the build process # - so there is no need to warn about them mgltools-molkit source: ancient-autotools-helper-file mgltools-molkit source: ancient-libtool